BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (329 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 ... 568 e-161 UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 ... 469 e-131 UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 T... 349 9e-95 UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 T... 311 2e-83 UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 T... 311 3e-83 UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 265 2e-69 UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 264 3e-69 UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 ... 264 4e-69 UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 ... 263 6e-69 UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 ... 258 2e-67 UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 ... 257 3e-67 UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390... 256 5e-67 UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Ta... 254 4e-66 UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Ta... 253 9e-66 UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 T... 250 4e-65 UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 T... 248 2e-64 UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 T... 247 4e-64 UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 T... 246 9e-64 UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 ... 245 1e-63 UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 T... 245 1e-63 UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Ta... 245 2e-63 UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Ta... 242 2e-62 UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 T... 241 2e-62 UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Ta... 240 4e-62 UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Ta... 237 6e-61 UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 T... 233 1e-59 UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subuni... 232 2e-59 UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 T... 229 8e-59 UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Ta... 229 9e-59 UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 T... 229 1e-58 UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33... 228 3e-58 UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 T... 227 5e-58 UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Ta... 226 6e-58 UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Ta... 226 9e-58 UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 ... 226 1e-57 UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 T... 225 2e-57 UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 T... 219 8e-56 UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 T... 219 1e-55 UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 T... 218 2e-55 UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdema... 218 2e-55 UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Ta... 218 2e-55 UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 T... 218 2e-55 UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 T... 215 1e-54 UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=... 215 2e-54 UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha... 212 1e-53 UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 T... 211 2e-53 UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 211 4e-53 UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 209 1e-52 UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 T... 207 3e-52 UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Ta... 206 1e-51 UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20... 203 5e-51 UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Ta... 203 8e-51 UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Ta... 202 9e-51 UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimo... 198 2e-49 UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 T... 198 2e-49 UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 T... 198 2e-49 UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Ta... 196 7e-49 UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain... 196 1e-48 UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Ta... 195 2e-48 UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP al... 190 6e-47 UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 T... 189 2e-46 UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 T... 188 2e-46 UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Ta... 186 8e-46 UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 T... 186 1e-45 UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacte... 179 8e-44 UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Ta... 179 1e-43 UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Ta... 179 2e-43 UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Ta... 178 3e-43 UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragm... 177 3e-43 UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Ta... 177 6e-43 UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 176 8e-43 UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Ta... 176 1e-42 UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=... 175 2e-42 UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragm... 174 5e-42 UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax... 172 2e-41 UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas... 170 5e-41 UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 ... 170 7e-41 UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Ta... 168 3e-40 UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 T... 166 1e-39 UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 T... 161 2e-38 UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 160 6e-38 UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Frag... 160 6e-38 UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 T... 157 4e-37 UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 157 6e-37 UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Ta... 155 2e-36 UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 T... 147 4e-34 UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 T... 147 6e-34 UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Ta... 147 7e-34 UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 T... 145 2e-33 UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Ta... 143 7e-33 UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis... 139 2e-31 UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 137 4e-31 UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=... 136 1e-30 UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Ta... 131 4e-29 UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 130 7e-29 UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 130 8e-29 UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Ta... 129 1e-28 UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Ta... 126 9e-28 UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chlor... 126 1e-27 UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalp... 125 2e-27 UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Ta... 125 2e-27 UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycopla... 124 3e-27 UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Ta... 123 8e-27 UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=... 122 2e-26 UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 T... 120 5e-26 UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermob... 114 3e-24 UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Ta... 114 4e-24 UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragmen... 114 5e-24 UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Ta... 110 7e-23 UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Ta... 109 1e-22 UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=... 107 5e-22 UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Ta... 107 5e-22 UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha... 107 6e-22 UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Ta... 107 6e-22 UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 ... 105 2e-21 UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Ta... 105 3e-21 UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas Re... 102 1e-20 UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimo... 100 7e-20 UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlo... 100 8e-20 UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=... 100 1e-19 UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 T... 100 1e-19 UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Ta... 98 5e-19 UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 96 2e-18 UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Ta... 96 3e-18 UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomo... 94 6e-18 UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=F... 93 1e-17 UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 92 2e-17 UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitoc... 91 4e-17 UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria lit... 90 1e-16 UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Ta... 88 5e-16 UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 87 1e-15 UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella ... 86 1e-15 UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Ta... 85 4e-15 UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Ta... 82 3e-14 UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta... 82 3e-14 UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Ta... 81 5e-14 UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogoni... 81 5e-14 UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Ta... 80 1e-13 UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subu... 79 3e-13 UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa fi... 77 6e-13 UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hy... 76 2e-12 UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox cart... 75 3e-12 UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomon... 75 4e-12 UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Ta... 73 1e-11 UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD... 69 2e-10 UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosir... 69 3e-10 UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 ... 68 5e-10 UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain... 67 6e-10 UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliel... 64 1e-08 UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alph... 63 2e-08 UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia... 62 3e-08 UniRef50_Q7M1B7 RNA polymerase chain n=1 Tax=Escherichia coli Re... 60 1e-07 UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candida... 60 1e-07 UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putativ... 60 1e-07 UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiropl... 57 1e-06 UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative ... 56 1e-06 UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, puta... 52 2e-05 UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,trunc... 52 2e-05 UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative... 49 2e-04 UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovo... 47 7e-04 UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomast... 47 0.001 UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1... 46 0.002 UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax... 45 0.004 UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Ta... 45 0.005 UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 T... 44 0.011 UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain... 43 0.015 UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobactera... 43 0.016 UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Plancto... 42 0.023 UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putativ... 42 0.024 UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 ... 42 0.039 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 42 0.044 UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 ... 41 0.047 >UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 Tax=cellular organisms RepID=RPOA_SHEPC Length = 329 Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust. Identities = 290/329 (88%), Positives = 310/329 (94%), Gaps = 1/329 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQV+ST AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS+KEGVQEDILEILLNLKGLAV ++GKDE +LTL+KSG GPV AADITHDGD Sbjct: 61 IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 V IV P HVICHLT N ISMRI+V+RGRGYVPAS R +E+D+RPIGRLLVDA +SPV Sbjct: 121 VTIVNPDHVICHLTGNN-DISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 RIAYNVEAARVEQRTDLDKLVI+M TNGTIDPEEAIRR+ATILAEQL+AFV+LRDV +P Sbjct: 180 ARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E+KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL Sbjct: 240 ELKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 TEIKDVLASRGLSLGMRLENWPPAS+AD+ Sbjct: 300 TEIKDVLASRGLSLGMRLENWPPASLADD 328 >UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 Tax=Bacteria RepID=RPOA_MARAV Length = 334 Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust. Identities = 239/326 (73%), Positives = 276/326 (84%), Gaps = 1/326 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQ SV E L PR +D+++ S+T AKVTLEPLERGFGHTLG+ALRRILLSSMPGCAVTE + Sbjct: 1 MQRSVHELLTPRTIDVKESSATRAKVTLEPLERGFGHTLGSALRRILLSSMPGCAVTEAQ 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS EGVQED++EILLNLKG+AV++ G+D+ LTL+K G G VTA DI D D Sbjct: 61 IDGVLHEYSAIEGVQEDVIEILLNLKGVAVKMNGRDDAELTLSKKGPGVVTAGDIKLDHD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEI P+HVICHL+ EN ++MR++V RGRGY PA R E++ R IGRL +DA +SPV Sbjct: 121 VEIANPEHVICHLS-ENGEVNMRLRVARGRGYEPADQRGLDEDETRAIGRLQLDATFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 R+AY VE+ARVEQRTDLDKLVI++ETNGTIDPEEAIRRAATIL +QL FVD ++P Sbjct: 180 RRVAYAVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLAVFVDFDHEKEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E EE+ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKSL Sbjct: 240 ERVEEEEEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASI 326 TEIKDVLASRGLSLGMRL+NWPPAS+ Sbjct: 300 TEIKDVLASRGLSLGMRLDNWPPASL 325 >UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Acidithiobacillus RepID=B5EM99_ACIF5 Length = 339 Score = 349 bits (895), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 239/324 (73%), Gaps = 5/324 (1%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 V E L+P+ VD+E +S+ A++ L PLERGFGHTLG+ LRR+LLSS+ G AVTEVEI+GV Sbjct: 4 VGELLRPQGVDVEVISARRARLALGPLERGFGHTLGSGLRRVLLSSLKGAAVTEVEIEGV 63 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHEYS+ EGVQED+++ILLNLK LAVR G+ + ++TL K G G +T ADI + +E+ Sbjct: 64 LHEYSSIEGVQEDVVDILLNLKMLAVRAHGRGDAVVTLRKRGPGQMTGADIVSEHGIEVA 123 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ VI LT + + +R+++ GRGY A+TR S E+ IG + +DA +SPV R++ Sbjct: 124 NPEQVIATLT-RDVELVLRLRIDEGRGYDAAATRRQSH--EKRIGVMALDASFSPVLRVS 180 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE--AFVDLRDVRQPEV 242 Y VE ARVEQRTDLD+L++++ETNG +DP A++ AA I QL A + R++ + Sbjct: 181 YLVENARVEQRTDLDRLILDVETNGVVDPVWAVQEAARIFRSQLGVLAGAETREIPEASQ 240 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + P+L+RPVDDLELTVRSANCLKAE I YIGDLVQ++E ELLK PNLG+KSL E Sbjct: 241 VQVSQSLTPLLIRPVDDLELTVRSANCLKAEDIFYIGDLVQKSEQELLKAPNLGRKSLNE 300 Query: 303 IKDVLASRGLSLGMRLENWPPASI 326 IK+VL + GL+LGMRL++WPP ++ Sbjct: 301 IKEVLVAHGLTLGMRLDSWPPENL 324 >UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 Tax=Proteobacteria RepID=RPOA_ROSDO Length = 338 Score = 311 bits (796), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 156/327 (47%), Positives = 232/327 (70%), Gaps = 8/327 (2%) Query: 6 TEFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 E +KP+ +D++ + + A VT EPLERGFG T+GNALRR+L+SS+ G A+T V+ID Sbjct: 7 AELIKPQQLDVKPGNDPARQATVTAEPLERGFGLTMGNALRRVLMSSLQGAAITSVQIDN 66 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+S+ GV+ED+ +I+LNLKG+++R++ + L+++ G G VTA DI+ +EI Sbjct: 67 VLHEFSSVAGVREDVTDIILNLKGVSIRMEVEGPKRLSISAKGPGVVTAGDISESAGIEI 126 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + HVICHL D+ A + M + V +G+GYV A ++ ++ PIG + +DA YSPV+++ Sbjct: 127 LNRDHVICHL-DDGADVYMELTVNQGKGYVSAE---KNKPEDAPIGLIPIDAIYSPVKKV 182 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 +Y+V+ R Q D DKL +++ET+G++ P++A+ AA IL +QL FV+ + Sbjct: 183 SYDVQPTREGQVLDYDKLTMKVETDGSLTPDDAVAFAARILQDQLGIFVNFEEPESASRA 242 Query: 244 EEKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 +E EF+P+LL+ VDDLEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL Sbjct: 243 DEDDGLEFNPLLLKKVDDLELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN 302 Query: 302 EIKDVLASRGLSLGMRLENWPPASIAD 328 EIK+VL+ GL LGM +E+WPP +I D Sbjct: 303 EIKEVLSGMGLHLGMDVEDWPPDNIED 329 >UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EW63_9PROT Length = 325 Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 158/321 (49%), Positives = 227/321 (70%), Gaps = 10/321 (3%) Query: 7 EFLKPRLVDIEQ-VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 + + PR + IE+ V AK+ EPLERG+G T+GN+LRR+LLSS+PG AVT V +DGV Sbjct: 2 QLINPRHISIEEKVPGRAAKIVFEPLERGYGTTIGNSLRRMLLSSLPGAAVTSVLMDGVA 61 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HEY + +GV+ED+++I+L+LK L +R++G + ++L G VTAADI + ++ Sbjct: 62 HEYDSIKGVREDVMDIILSLKELDLRMEGDEAATISLEIKGSAIVTAADIKCPAGLSVLN 121 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ ++ HL D +A + + V++GRGY PA+ R E DER +G LLVDA YSP+ R++ Sbjct: 122 PELILAHLND-DAHLKIEAVVEKGRGYEPATDR---EVDERAVGSLLVDASYSPIRRVST 177 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD---VRQPEV 242 VEAARV QRT+ DKL++E+ETNG++ PEEA+ AA IL QL FVD + V +PE Sbjct: 178 RVEAARVGQRTNYDKLIMEIETNGSLSPEEALNSAAKILEAQLAVFVDFENVSIVSEPEG 237 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 ++ D +L++P++ L+L+VRS NCLK++ + +GDLVQR+E E+L+TPN G+KSL E Sbjct: 238 PDDT--LDNLLIQPIEHLDLSVRSMNCLKSDDVFRVGDLVQRSEQEMLRTPNFGRKSLNE 295 Query: 303 IKDVLASRGLSLGMRLENWPP 323 IK+VL + GL LGM L NWPP Sbjct: 296 IKEVLENMGLELGMDLPNWPP 316 >UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPG1_9BACT Length = 335 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/318 (44%), Positives = 213/318 (66%), Gaps = 8/318 (2%) Query: 7 EFLKPRLVD-IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E +KPR ++ + +V+ + + EP E+GFG T+GNALRR+LL+++ G AV V+IDGV Sbjct: 8 EIIKPRKIEAVGEVTDRYGEYVAEPYEKGFGITIGNALRRVLLATIEGTAVVGVKIDGVS 67 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 +E++T EGV ED+++IL+N+K L +++ + + + K+G GPVTA DIT D VEI+ Sbjct: 68 NEFATLEGVYEDVVDILMNIKMLDLKLHTHETRRVYIKKTGEGPVTAGDITGDTMVEILT 127 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P IC +TD N ++M VQRG GYVPA E+D I L VDA ++P++++ Y Sbjct: 128 PDQHICTITDPNKELNMEFVVQRGIGYVPAE---ELEKDYDEIDMLSVDAVFTPIKKVNY 184 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQPE 241 +V+ ARV Q TD D+L +E+ET+G+I+PE+AI AA I+ +Q+ F++ +V+Q E Sbjct: 185 HVDNARVGQSTDYDRLTLEVETDGSINPEDAIGFAAKIIKDQMNLFINFDEPVVEVKQDE 244 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + + + +L + +++LEL+VR+ NCLK I + +L +T+ E+LKT N G+KSL Sbjct: 245 EENQNDQLLDLLDKSIEELELSVRAYNCLKNANIKTLAELCMKTDAEMLKTKNFGRKSLE 304 Query: 302 EIKDVLASRGLSLGMRLE 319 EIK VL GLSLGM LE Sbjct: 305 EIKKVLQELGLSLGMDLE 322 >UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RPOA_DESAD Length = 346 Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 142/318 (44%), Positives = 211/318 (66%), Gaps = 7/318 (2%) Query: 7 EFLKP-RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E +KP +LV + + + K EPLERGFG T+GN+LRR+LLSSM G A V+I+GV Sbjct: 17 ELVKPEQLVRDPKSNELYGKFICEPLERGFGTTIGNSLRRVLLSSMQGAAAVAVKIEGVQ 76 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE++T EGV ED+ EI+LN+K + + + LTL + G VTAADI + +V+++ Sbjct: 77 HEFTTIEGVMEDVTEIVLNIKQIRFAMTTDEPQFLTLRVNKQGVVTAADIQENQNVKVLN 136 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ +I L+ E + M +++ G+GYVPA +H E IG +++D+ +SP+ ++AY Sbjct: 137 PEQIIATLS-EKMDMEMTFEIRMGKGYVPAD--MH-EGLVNEIGHIILDSSFSPIRKVAY 192 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV--RQPEVK 243 +VE ARV Q T+ DKL+IE+ T+G++ PE+AI +A IL +QL F++ ++ Q E K Sbjct: 193 SVEQARVGQMTNYDKLIIEVFTDGSVTPEDAIAYSAKILKDQLSVFINFDEMGSEQEESK 252 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 E + +P L + +D+LEL+VR+ NCLKA I +G+LVQRTE +LKT N G+KSL EI Sbjct: 253 ESDLDLNPNLFKSIDELELSVRATNCLKAANIRIVGELVQRTEQTMLKTKNFGRKSLDEI 312 Query: 304 KDVLASRGLSLGMRLENW 321 + VL S L GM LE++ Sbjct: 313 RRVLDSMELKFGMVLEDF 330 >UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 Tax=Proteobacteria RepID=RPOA_EHRRW Length = 374 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 132/309 (42%), Positives = 205/309 (66%), Gaps = 7/309 (2%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 A + +EPLE GF TLGNALRR+++SS+ G AV VEI+ VLHE+++ GV+ED+ +ILL Sbjct: 57 ADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYGVEIENVLHEFTSISGVREDVTDILL 116 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 N+ + +++ G D +L+L G V + I D I+ +IC L D++ +++ Sbjct: 117 NISMIRLKLSGMDNKVLSLKVKGPCEVRSGMIADTPDCTILNKDLLICTL-DQDVDFNIK 175 Query: 144 IKVQRGRGYVPASTRIHSEE---DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 + V G+GYVPA R + ++ P+ + +A YSP+++ ++ VE++R+ Q TD D+ Sbjct: 176 MYVNSGKGYVPAVKRKSINKFGLNDVPVNFIATNALYSPIKKASFRVESSRIGQFTDYDR 235 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE---FDPILLRPV 257 L++ +ET+ +I P+EA+ AA IL +Q + F++ + +P K + + +D LLR V Sbjct: 236 LIMSVETDHSILPDEAVALAARILQDQFQQFINFDETDEPHQKVDTKDVLPYDSNLLRKV 295 Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 D+LEL+VRS NCLK + I YIGDLVQ+TE ++L+TPN G+KSL EI ++LAS L LGM+ Sbjct: 296 DELELSVRSYNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINELLASMNLHLGMK 355 Query: 318 LENWPPASI 326 + NWPP SI Sbjct: 356 IANWPPESI 364 >UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 Tax=Bacteria RepID=B5YG22_THEYD Length = 343 Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 216/327 (66%), Gaps = 19/327 (5%) Query: 7 EFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 EF P+ V+ +Q ++ T+ K+ +EPLERG+G TLGN+LRR+LLSS+ G AV + I+ Sbjct: 6 EFQMPKKVEFDQESLTDTYGKLVIEPLERGYGITLGNSLRRVLLSSLDGVAVYAIRINDA 65 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 LHE+S+ +GV+EDIL+I+LN+K L + Q D+ I T+ G VTA I DG E Sbjct: 66 LHEFSSIKGVKEDILDIILNVKKLRFKYYAQDSDKKIATIKIKGPADVTAESIQTDGTYE 125 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 ++ IC L D++A + M + +++GRGYVP+ ++DE P+ + VDA +SPV++ Sbjct: 126 VLNKSQYICSL-DQDAQMEMVLYIRKGRGYVPSEA---IKDDELPVDAITVDAIFSPVKK 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--DVRQP 240 + + VE RV + TD D+L++E+ T+G+I PE AI A++IL + E + + +++ Sbjct: 182 VNFRVEKTRVGELTDYDRLILEIWTDGSITPERAISDASSILIKHFEYLIFFKEAELQNK 241 Query: 241 EVKEEKP------EFDPI---LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 E+ E P FD + +L+P++DLEL+VR+ NCLK+ I+ I +LVQRTE EL+K Sbjct: 242 EIHETVPNPEEDLNFDLLNENILKPIEDLELSVRAYNCLKSAGINTIAELVQRTEGELMK 301 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRL 318 T N G++SL EIK+VL + GL LGMR+ Sbjct: 302 TKNFGRRSLEEIKEVLTNMGLKLGMRI 328 >UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 Tax=Bacteria RepID=RPOA_ORITB Length = 342 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/326 (43%), Positives = 216/326 (66%), Gaps = 9/326 (2%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTL--EPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +KP V E V + T+ EPLERG G TLGN+LRR+LLSS+ G A+T ++I G Sbjct: 10 SSLIKPTKVQYEAVDNNPNIKTMVVEPLERGLGLTLGNSLRRVLLSSLRGAAITSIKIPG 69 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAA--DITHDGDV 121 V HE S GV+ED+ +I+LN++ + V++ + L L +G VTA +T DV Sbjct: 70 VEHELSPVSGVKEDLTDIILNIRDVIVKMDSVQKCNLRLEVTGPAVVTAGMITVTDKQDV 129 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ PQHVIC+L+ + ++ M + ++G+GYVP S +H+ + PIG + +DA ++PV Sbjct: 130 TILNPQHVICNLS-KGFNLEMDLICEQGKGYVPTSC-LHNSDS--PIGAIHLDALFNPVR 185 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 R++Y VE + V Q T+ DKL+I +ETNG ++P+ A+ AA IL +QL+ F++ ++V + + Sbjct: 186 RVSYKVENSMVGQMTNYDKLIITVETNGVVNPDAALGLAARILLDQLQVFINFQEVEEEK 245 Query: 242 VKEEKPE-FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 ++ + + +P+LL+ V +LEL+VRS NCLK E I Y+GDLV RTE ++LKT N G+KSL Sbjct: 246 PEKLELQTINPVLLKKVYELELSVRSQNCLKNENIVYVGDLVARTETQMLKTANFGRKSL 305 Query: 301 TEIKDVLASRGLSLGMRLENWPPASI 326 E+K VLA+ L GM+ WPP ++ Sbjct: 306 NELKKVLANFNLEFGMKDIGWPPDNL 331 >UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 Tax=Bacteria RepID=RPOA_ANATD Length = 324 Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/313 (46%), Positives = 204/313 (65%), Gaps = 10/313 (3%) Query: 7 EFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 EF KP + E++S + + + +EPLERG+G T+GNALRR LLSS+PG AVT V+IDGV Sbjct: 3 EFQKPT-IRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDGV 61 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHE+ST GV ED+ EI+LNLKGLA+++ ++ + G V A DI D D+EI Sbjct: 62 LHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKVMYIEAQGECEVKAKDIKADADIEIC 121 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P H I L +++A + M I V +G+GYV A +++ +PIG + VD+ Y+PV ++ Sbjct: 122 NPDHHIATL-NQDARLFMEITVNQGKGYVLAE---RNKQPNQPIGVIPVDSIYTPVVKVN 177 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR---QPE 241 Y VE RV Q TD DKL +E+ TNGTI P+EA+ AA IL E F DL ++ + Sbjct: 178 YKVENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFNLFTDLSNIPTKIETV 237 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 VK+E P+ + +L +++LEL+VRS NCLK I+ + DLV +TE E++K NLGKKSL Sbjct: 238 VKQEPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSLE 297 Query: 302 EIKDVLASRGLSL 314 E+ L S GLSL Sbjct: 298 EVIQKLHSLGLSL 310 >UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390 Tax=Bacteria RepID=C9R8G2_AMMDK Length = 319 Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 147/310 (47%), Positives = 202/310 (65%), Gaps = 10/310 (3%) Query: 10 KPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 KPR+ VD + + + +EPL RG+G TLGNALRR+LLSS+PG AVT V+I+GVLHE+ Sbjct: 6 KPRVSVDSLAPTGDYGRFVIEPLVRGYGITLGNALRRVLLSSIPGAAVTMVKIEGVLHEF 65 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 ST GV+ED++EI+LNL+GL +R+ +E IL + +G V A DI D DVEI+ P H Sbjct: 66 STLPGVREDVVEIILNLRGLKIRMHTDEERILRIEAAGEREVRARDIIADADVEILNPDH 125 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I L E + M + V+RGRGYVPA + H + IG + VDA +SPV+++ Y VE Sbjct: 126 YIASLAPE-GRLFMEMTVRRGRGYVPADRQRH----DHVIGAIPVDADFSPVKKVNYRVE 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQPEVKE 244 A V Q D D+L++E+ TNG + PEEA+ AA IL E + L + + V++ Sbjct: 181 NAWVGQNADYDRLILEVWTNGCVRPEEAVSLAARILCEHFQLLTGLSTSTGHLEKIMVEK 240 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 E+ + +L P+++L+L+VRS NCLK I+ I DL QRTE E++K NLGKKSL E+K Sbjct: 241 EEDNKNRLLEMPIEELDLSVRSYNCLKRAGINTILDLTQRTEEEMMKVRNLGKKSLEEVK 300 Query: 305 DVLASRGLSL 314 LA GLSL Sbjct: 301 QKLAELGLSL 310 >UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Tax=Bacteria RepID=RPOA_DESAH Length = 340 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/323 (43%), Positives = 213/323 (65%), Gaps = 11/323 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E + P V + +ST+ K EPLE+G+G T+GN+LRRI+LSS+ G A+ V+ LH Sbjct: 13 EIIMPEKVAV-TTTSTYGKFVCEPLEKGYGITIGNSLRRIILSSLYGAAIVSVKFSEALH 71 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAAD-ITHDGDVEIVK 125 EYS V+ED+ EI++NLK + +++ + ILT+N G VTAAD I+ DG VEI+ Sbjct: 72 EYSVVSDVREDVSEIIMNLKEVKLKLDDPGDKILTINVKGEKFVTAADIISGDGRVEILN 131 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ I ++ + + M + V+ G+GY A++ +++ E P+G + +D+ +SP++R+ Y Sbjct: 132 PEQHIATVS-KGGELMMTMLVKTGKGYALAAS---NKDPEAPVGTIPIDSVFSPIKRVKY 187 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245 V A+R+ Q+TD DKL +E+ T+G++ PE+++ AA IL EQ+ F++ + +PE+ E+ Sbjct: 188 VVGASRIGQKTDYDKLTMEIWTDGSVTPEDSVAYAAKILKEQMNPFINFDEDIEPELVEK 247 Query: 246 KPE-----FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 + E F+ L R VD+LEL+VRS+NCLK I I LVQ+T+ E+LKT N G+KSL Sbjct: 248 EHEGAAKNFNENLYRSVDELELSVRSSNCLKNAQILKIYQLVQKTDNEMLKTKNFGRKSL 307 Query: 301 TEIKDVLASRGLSLGMRLENWPP 323 EIK+VL S LSLGM LE + P Sbjct: 308 NEIKEVLTSMDLSLGMDLEGFEP 330 >UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Tax=Desulfovibrionales RepID=RPOA_DESMR Length = 347 Score = 253 bits (645), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 142/321 (44%), Positives = 210/321 (65%), Gaps = 10/321 (3%) Query: 6 TEFLKPRLVDIEQVSS-THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 TE +KP ++D + S+ T + EPLERGFG TLGNALRR+LLSS+ G A+ I+GV Sbjct: 16 TELVKPEVLDKDPSSTETFGRFVCEPLERGFGTTLGNALRRVLLSSLQGAAIVAARIEGV 75 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ST GV ED+ EI+LNLK + + + + LTL G V A+ I + +V ++ Sbjct: 76 QHEFSTIPGVIEDVTEIILNLKQVRLAMATDEPQRLTLLAKEKGEVRASAIQGNHNVSVL 135 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 +I L+ E+ + ++V+ G+GYVPA +H E E IG +L+DA +SPV+++A Sbjct: 136 SEDVLIATLS-EDRDFRIDLEVRMGKGYVPAD--MH-EGLESEIGLILLDASFSPVKKVA 191 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y +E ARV Q T+ DKLV+E+ T+G+I PE+AI +A IL +QL F++ D ++ E ++ Sbjct: 192 YTIEQARVGQMTNYDKLVLEVTTDGSIAPEDAISYSAKILKDQLTVFINF-DEKESEAEK 250 Query: 245 EKP----EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 + E +P L + +D+LEL+VR+ NCLK+ I +G+L+Q+TE E+LKT N GKKS Sbjct: 251 NRRRDDIELNPSLFKSIDELELSVRATNCLKSANIQTVGELMQKTEHEMLKTKNFGKKSF 310 Query: 301 TEIKDVLASRGLSLGMRLENW 321 EI+ VL GL GMR+EN+ Sbjct: 311 EEIRRVLEDMGLEFGMRIENF 331 >UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DVZ0_METI4 Length = 337 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/317 (43%), Positives = 205/317 (64%), Gaps = 12/317 (3%) Query: 11 PR-LVDIEQVS-STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 PR +V E VS ST K +EP E G+GHTLGN+LRRILLSS+ G A++ V+I+GV+HE+ Sbjct: 11 PRSIVKDETVSNSTFGKYIIEPFESGYGHTLGNSLRRILLSSLEGAAISSVKIEGVMHEF 70 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 +T EGV ED+++I+LNLK + +++ + + ++ G VTA DI D VEIV P+ Sbjct: 71 TTMEGVVEDVVDIVLNLKKVLIKMPDRQTRVFRVDVFKEGAVTAGDIQVDPGVEIVNPEQ 130 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 +IC L D+ + M ++V+ GRG++ ++++ ++ IG + +D +SPV + Y VE Sbjct: 131 LICTL-DKKQRLLMELEVKVGRGFLLGE---YNKKQDQSIGVIPIDCLFSPVRHVKYTVE 186 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL------RDVRQPEV 242 RV QRTD D+L+ E+ T+G I P+EA+ ++A IL L+ FV + +P + Sbjct: 187 NTRVGQRTDYDRLIFEIWTDGRIGPDEALVQSAAILQHHLDIFVQYGKEPVEFEKPKPPI 246 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 KEE+ IL V+++EL+VR+ANCL I +G L +TE E+LK N GKKSL E Sbjct: 247 KEEENRLRKILNMSVNEIELSVRAANCLNNANITTVGQLAMKTEAEMLKYRNFGKKSLNE 306 Query: 303 IKDVLASRGLSLGMRLE 319 IK+ LAS GLSLGM+ + Sbjct: 307 IKEKLASLGLSLGMKFD 323 >UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 Tax=Bacteria RepID=RPOA_ACIBL Length = 368 Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 202/316 (63%), Gaps = 8/316 (2%) Query: 8 FLKPR--LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 F KP+ D E ++ + +P ERGFG T+GNALRR+LLSS+ G A+T V+I+GVL Sbjct: 6 FQKPKRLAFDSESLTDKYGHFWAQPFERGFGTTIGNALRRVLLSSIEGAAITAVKIEGVL 65 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE+ + GV ED +I+LNLK + R+ G + L G VT+ I D DVEI+ Sbjct: 66 HEFQSIPGVVEDATDIILNLKQIPFRLNGDAPKAIYLRAEQPGIVTSGMIETDADVEILD 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I ++ E + M +++++GRGYV A +++ +G + +D+ +SPV + Y Sbjct: 126 KDVYIATIS-EGGKLDMEMRLKKGRGYVSADKNF---DEDLGLGFIPIDSVHSPVRKCNY 181 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQPEVKE 244 +VEAAR+ Q TD DKL IE+ TNG+++P +A+ AA +L + + F++ ++ ++ Sbjct: 182 SVEAARLGQITDYDKLSIELWTNGSVNPADALGLAAKLLKDHMNIFINFEEEIEASHAED 241 Query: 245 EKPEF-DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 KPE + L R V++LEL+VRS NCLK I IG+LVQ+TE E+LKT N G+KSL EI Sbjct: 242 RKPEIRNENLNRSVEELELSVRSYNCLKNANIQTIGELVQKTEAEMLKTKNFGRKSLNEI 301 Query: 304 KDVLASRGLSLGMRLE 319 K++LAS GLSLGM+++ Sbjct: 302 KEILASMGLSLGMKID 317 >UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Synergistaceae RepID=D1B5U6_THEAS Length = 342 Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 147/320 (45%), Positives = 192/320 (60%), Gaps = 25/320 (7%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +E+V+ +H +V LEPLERG+G TLGNALRR+LLSS+PG + V +DGVLHE+ST GV+ Sbjct: 10 VEEVTPSHGRVVLEPLERGYGTTLGNALRRVLLSSIPGAGIVAVRVDGVLHEFSTIPGVR 69 Query: 76 EDILEILLNLKGLAVRVQ--GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 ED++E+LLNLK + VRV G D +L L G V AADI D DVE V P+ VIC L Sbjct: 70 EDVIELLLNLKHVPVRVSGPGTDVKVLRLEAEGPKVVRAADIQGDADVEFVDPEAVICTL 129 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 DE +SM + ++RG GY P P+ LL+DA +SPV+R+ Y V+ R Sbjct: 130 -DEGHRVSMDLYIERGVGYAPID---RPRPSYLPVDALLIDAIFSPVKRVRYEVQDVRSG 185 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK---------- 243 QRTD D+LV+E+ TNG + +A+ A++IL+ + V Sbjct: 186 QRTDYDRLVLEVWTNGVVSFRDAVAEASSILSGYFRGLSTSLWGQSSAVTAGDEDFFEEK 245 Query: 244 -----EEKP----EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 +E P E D +L RP+ DLEL+VRS NCL IH IGDLV R + ELLK N Sbjct: 246 DEEDLQEVPAVCGEDDSVLSRPIKDLELSVRSENCLLRGGIHRIGDLVSRPKEELLKIRN 305 Query: 295 LGKKSLTEIKDVLASRGLSL 314 LGK SL EI++ L GLSL Sbjct: 306 LGKISLREIEEKLGKFGLSL 325 >UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 Tax=Coriobacteriaceae RepID=C8W7X1_ATOPD Length = 313 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 141/318 (44%), Positives = 199/318 (62%), Gaps = 15/318 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 ++EF++P V ++++ + A+V++EPLERG+G TLGN+LRR+LLSS+ G AV ++IDGV Sbjct: 1 MSEFIRPN-VSVDEIGANVARVSVEPLERGYGDTLGNSLRRVLLSSLEGAAVEAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVR-VQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE++T EGV ED+ +I+LN+KGL R DE +++ G VT AD+ E+ Sbjct: 60 QHEFTTVEGVYEDVTDIVLNVKGLVFRNTNNSDEAEASISVDGPCTVTGADLDVPMGYEL 119 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V P IC L E A +SMR+++ GRGYV +E + PIG + VD+ +SPV R Sbjct: 120 VNPAQHICALA-EGAHLSMRLRIGNGRGYVSGED---NERENDPIGFIHVDSIFSPVRRC 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 A VE RV + TD D+LV+E+ETNG I P EA+ AA I+ + + AF+ L D E + Sbjct: 176 AKAVEPCRVGRHTDYDRLVLEVETNGAISPREAVVEAANIINQHMSAFMGLTDF--DETQ 233 Query: 244 EEKPEF-------DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 EE F D L + V+DL+L+VRS NCLK IH + LV +E +LL N G Sbjct: 234 EEASIFAKADVEDDSELEKQVEDLDLSVRSYNCLKRAGIHSVRQLVDFSENDLLNIRNFG 293 Query: 297 KKSLTEIKDVLASRGLSL 314 KS+ E+K+ L S GLSL Sbjct: 294 VKSIEEVKEKLESMGLSL 311 >UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 Tax=Bacteria RepID=RPOA_SACEN Length = 359 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/323 (44%), Positives = 198/323 (61%), Gaps = 8/323 (2%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 +P L + E V+ T ++ +EPLE GFG+TLGN+LRR LLSS+PG AVT + IDGVLHE++ Sbjct: 6 RPSLAE-EAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVLHEFT 64 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV+ED+ +++LNLK L V + + V + L K G G VTAADI V + P Sbjct: 65 TIPGVKEDVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHNPDLH 124 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I L + + + + V+RGRGYVPA + +++ IGR+ VD+ YSPV ++ Y VEA Sbjct: 125 IATL-NGKGKLEIELVVERGRGYVPA---VQNKQTGAEIGRIPVDSIYSPVLKVTYKVEA 180 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-DVRQPEVKEEKPE 248 RVEQRTD DKL++++ET +I P +A+ A L E +L D E+ E Sbjct: 181 TRVEQRTDFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPAE 240 Query: 249 FDPI--LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 D I P++DL+LTVRS NCLK E IH +G+LV R+E +LL N G KS+ E+K Sbjct: 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300 Query: 307 LASRGLSLGMRLENWPPASIADE 329 L GLSL + P++ A E Sbjct: 301 LVGLGLSLKDSPPGFDPSAAAAE 323 >UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWA6_9BACT Length = 322 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/313 (45%), Positives = 198/313 (63%), Gaps = 9/313 (2%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 P+ + + S+ ++V +EP ERGFG T+GNALRR+LLSS+PG A+T + V HE+S Sbjct: 10 PKGLAVSHSSARSSRVVVEPFERGFGITVGNALRRVLLSSIPGVAITAIRAKNVFHEFSN 69 Query: 71 KEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 GV ED+ +I+LNLK L ++ + E L L G V A+DI G VE++ P HVI Sbjct: 70 IPGVVEDVTDIILNLKSLRMKPLLQGEHWLHLKVKGPRIVKASDIDTVGAVEMMDPDHVI 129 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 L DE + M +K + GRGYVPA HS E +G + +DA ++P+ ++ Y VE+ Sbjct: 130 ATL-DEGGHLDMDLKTEFGRGYVPAD---HSRSTETEVGIIPIDAIFTPINKVNYFVEST 185 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV--DL---RDVRQPEVKEE 245 RV + TD D+L+ E+ET+G+I P EA+ AA IL L+ FV DL D ++ Sbjct: 186 RVGRITDYDRLIFEIETDGSITPGEALSEAAKILRTHLDLFVSSDLHLANDSSPLSLESN 245 Query: 246 KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 + + I+ + V++LEL+VR+ANCLK+ I IG+LV RTE ELL+T N GKKSL EIK+ Sbjct: 246 SSKEETIMDKSVNELELSVRAANCLKSSDIKKIGELVIRTEDELLQTKNFGKKSLDEIKE 305 Query: 306 VLASRGLSLGMRL 318 L + GLSLGM L Sbjct: 306 ALENIGLSLGMDL 318 >UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Tax=Planctomycetales RepID=RPOA_RHOBA Length = 331 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 134/317 (42%), Positives = 199/317 (62%), Gaps = 13/317 (4%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 VD + ++ T+ K + EP ERGFG ++GN++RR+LLSS+ G AVT+++I G HE++T G Sbjct: 18 VDRDSLTQTYGKFSAEPFERGFGASIGNSMRRVLLSSLVGSAVTQIKIRGAQHEFTTIPG 77 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 V ED+ +I+LN+K L V ++T+ ++ G VT AD+ D DVEI+ HVIC L Sbjct: 78 VLEDVTDIVLNVKSLIVNSNTDSTRVITVERNTAGVVTGADVQTDADVEIINKDHVICTL 137 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 TD+ M + V+ GRGYVP++ HS D IG + +DA +SP+ R+ Y VEA RV Sbjct: 138 TDD-VPFMMEMVVETGRGYVPSTE--HSSVDHE-IGIIPIDAVFSPIVRVRYEVEATRVG 193 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV--------KEE 245 Q+T+ D+L +E+ T+GTI+PE A+ AA IL + L FV R++ P + Sbjct: 194 QKTNYDRLNLEIWTDGTINPEMALTEAAKILRKHLNPFVQYREL-GPSIFSAARGGAGSP 252 Query: 246 KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 + + + L + DL L+VR+ NCL++E I + DLVQRTE LL+ N G +L E+++ Sbjct: 253 EAQLEAKLNMTLADLRLSVRANNCLESENIMTVRDLVQRTEDSLLEVRNFGDTTLNEVRE 312 Query: 306 VLASRGLSLGMRLENWP 322 L+ GL LGMR+ N P Sbjct: 313 KLSQYGLHLGMRVPNQP 329 >UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Tax=Coriobacteriaceae RepID=C7MLS1_CRYCD Length = 316 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 136/323 (42%), Positives = 201/323 (62%), Gaps = 22/323 (6%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +TEF++P + E+VS T A+ ++PLERG+G+TLGN +RR+LL+S+ G A T ++IDGV Sbjct: 1 MTEFMRPTIT-TEEVSDTVARFVVDPLERGYGYTLGNTMRRVLLNSLDGAAATAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGP--VTAADITHDGDVE 122 HE++T EGV EDI +I+LN+KGL V +D + T + S GP VT AD+ + Sbjct: 60 QHEFATAEGVIEDITDIVLNVKGLVFSVFAEDAIEATAHVSAEGPCTVTGADLQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P HVI + D + M I++ GRGYV A ++ +E PIG + VD+ +SPV R Sbjct: 120 LVNPDHVIATVAD-GGQLDMTIRIGVGRGYVVAE---RNKRNEDPIGIIHVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR------- 235 A +V RV Q TD DKL++E+ET+G++ P +A+ +AA I+ + + AF+ L Sbjct: 176 CALSVTDTRVGQSTDYDKLILEVETDGSLTPTDAVCQAANIVTQYMGAFLSLNESEEEEE 235 Query: 236 ----DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + PE +E E D + ++DL+L+VRS NCLK IH + LV+ +E +LL Sbjct: 236 GEVPSIFAPEGEETNAELD----KQIEDLDLSVRSYNCLKRAGIHSVRQLVEYSENDLLN 291 Query: 292 TPNLGKKSLTEIKDVLASRGLSL 314 N G KS+ E+KD L S GL+L Sbjct: 292 IRNFGAKSIEEVKDKLISMGLNL 314 >UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 Tax=Firmicutes RepID=RPOA_DESHD Length = 315 Score = 241 bits (615), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 137/312 (43%), Positives = 201/312 (64%), Gaps = 8/312 (2%) Query: 7 EFLKPRLVDIEQVS-STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E KP++ +E+ +++AK +EPLERG+G TLGN+LRRILLSS+PG AVT V+I+GVL Sbjct: 3 EIEKPKIECVERTDDNSYAKFVVEPLERGYGITLGNSLRRILLSSLPGTAVTSVKIEGVL 62 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE+ST GV ED+ +I+LNLK LA++ + +L L G G + A DI D D+EI+ Sbjct: 63 HEFSTVPGVLEDVTDIILNLKSLALKGHTDEPKVLRLEAEGEGVIKAGDIITDADIEILN 122 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P I L D++ + M + +RGRGYV A +++ ++ IG + +D+ ++P+ ++ Y Sbjct: 123 PDLKIATL-DKDGRLFMEMTAERGRGYVSAD---KNKKPDQAIGIIPIDSIFAPIYKVNY 178 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD-VRQPEVKE 244 VE RV TD DKL +E+ +NG+I PEEA AA IL+E L F+ L D + E+ Sbjct: 179 TVEDTRVGMVTDYDKLTLEVWSNGSITPEEATSLAAKILSEHLRLFIGLTDKLNNVEIMV 238 Query: 245 EKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 EK E D IL ++DL+L+VRS NCLK I+ + +L Q+TE +++K NLG+KSL E Sbjct: 239 EKEEEAKDKILEMTIEDLDLSVRSYNCLKRAGINSVEELTQKTEEDMIKVRNLGRKSLEE 298 Query: 303 IKDVLASRGLSL 314 ++ L GL Sbjct: 299 VESKLKELGLGF 310 >UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4J0_GEMAT Length = 357 Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 142/331 (42%), Positives = 197/331 (59%), Gaps = 25/331 (7%) Query: 5 VTEFLKPRLVDI--EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 ++ ++P+LV+ + S A+ L+PLERGFGHTLGNA+RR+LLSS+ G AV ID Sbjct: 6 LSGLVRPQLVEATKREDSPNLAEFRLQPLERGFGHTLGNAMRRLLLSSLRGSAVWAFRID 65 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDV 121 GV+HE+ T GV ED+ +I+ NLK L + + + ++ +L ++KSG G VTAADI G V Sbjct: 66 GVVHEHQTIGGVVEDVHQIIGNLKTLTLALPDEVEQTVLRISKSGPGTVTAADIIATGGV 125 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLL------VDA 175 I+ P H I +T E ++ + V +GRGY+ E D+ P + L +DA Sbjct: 126 RIIDPSHHIFTITGER-DFNIELYVNKGRGYI--------ESDQHPADKNLSVDVVRIDA 176 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 YSPV R+ + V RV QRTD D+L + +ETNGT+ PEEA+ AA + + FV Sbjct: 177 IYSPVRRVNFTVAETRVGQRTDYDRLTLTVETNGTMSPEEAVSYAAALAQTHFQYFVGFG 236 Query: 236 D--VRQPEVKEEKPEFDPI----LLR-PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 QP + D I L R P+DDLEL+VRS N LK I +GDLV++TE + Sbjct: 237 SSASAQPGTAGDGANSDAIRLAELFRTPIDDLELSVRSVNSLKNSNIRSLGDLVRQTEAQ 296 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 319 +L+ N GKKSL EI +L GL+ GMR E Sbjct: 297 ILQVKNFGKKSLQEIAALLEKEGLNFGMRYE 327 >UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Slackia RepID=C7N7V0_SLAHD Length = 316 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 134/319 (42%), Positives = 197/319 (61%), Gaps = 14/319 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + EF++P V E+VS T A+ +EPLERGFG+TLGN +RR+LLSS+ G T ++I+GV Sbjct: 1 MAEFMRPT-VTTEEVSDTDARFVVEPLERGFGYTLGNCMRRVLLSSLDGARATAIQIEGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 HE++T EGV ED+ +I+LN+KGL +D E T++ G VT ADI + Sbjct: 60 QHEFTTAEGVIEDVTDIVLNVKGLVFAALTEDYTEATATISVEGPCTVTGADIQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 ++ P+HVI + D +++M I++ GRGYV A +E+ PIG + VD+ +SPV R Sbjct: 120 LINPEHVIATVAD-GGTLNMSIRIGVGRGYVSAERNKRTED---PIGIIPVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE- 241 V RV QRTD D+L++E+ET+G+I P EA+ RAA I+ + + AF+ L D+ + Sbjct: 176 CTLAVNDTRVGQRTDFDQLLLEVETDGSIAPNEAVCRAANIINQYMGAFLTLADITDEDE 235 Query: 242 ------VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 E E + L + ++DL+L+VRS NCLK IH + LV+ +E +LL N Sbjct: 236 GDIPSIFATEGQESNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEFSENDLLNIRNF 295 Query: 296 GKKSLTEIKDVLASRGLSL 314 G KS+ E+KD L S L+L Sbjct: 296 GAKSIEEVKDKLISMDLNL 314 >UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_SALRD Length = 328 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/320 (42%), Positives = 205/320 (64%), Gaps = 16/320 (5%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 P V +E+VS + + + PLERG+G T+GNALRR+LLSS+ G A+T V+IDGV HE+ST Sbjct: 9 PEGVHVEEVSDSEGQFVMGPLERGYGVTIGNALRRVLLSSLRGLAITAVKIDGVQHEFST 68 Query: 71 KEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH-DGDVEIVKPQHV 129 GV ED+ +++LNLK + + E L LN G G TAADI + +++ P Sbjct: 69 IPGVTEDVADLILNLKEVRFKADEMQEGHLHLNLEGPGNWTAADIDEATAEYDVLNPDQH 128 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDER---PIGRLLVDACYSPVERIAYN 186 + L E+A +++ ++V GRGYVP SEE++R PIG + +D+ ++P++ + Y Sbjct: 129 VATLA-EDAVVNVDLRVGYGRGYVP------SEENKREDDPIGVIAIDSIFTPIKNVNYE 181 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-----RDVRQPE 241 V+ RV Q+ D ++L++++ET+G++ PEEAI + A+IL + + F+ L V + E Sbjct: 182 VKPTRVGQKIDYEELLLDVETDGSLTPEEAITQGASILRDHVSFFIQLEEEPEPVVEEQE 241 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 V EE +L +PVD+L+L+VRS NCLKA I IGDLV+R E E+LK N G+KSL Sbjct: 242 VDEEVKRIRELLAQPVDELDLSVRSHNCLKAANIKTIGDLVRREEDEMLKFRNFGRKSLQ 301 Query: 302 EIKDVLASRGLSLGMRLENW 321 E+ +VL RGL GM +E + Sbjct: 302 ELVEVLDERGLQFGMDVEEY 321 >UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED1 Length = 333 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/336 (42%), Positives = 194/336 (57%), Gaps = 36/336 (10%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +F PR+ E V T+EPL+RGFG+T GN+LRR+LLSS+ G AVT V I+GV H Sbjct: 3 DFQVPRIT-TETVEENRGSFTIEPLDRGFGYTFGNSLRRVLLSSLAGAAVTSVRIEGVAH 61 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 E+ST GV+ED+ +I+LNLKG+ R+ E+ L +G G +TA DI VEI+ Sbjct: 62 EFSTIPGVKEDVTDIVLNLKGIVCRMHSDATEIEAPLVVTGPGDITAKDIDLPSGVEILN 121 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P I L ++ + + + + RGRGY PA ++ ++PIG + +D+ +SPV R+AY Sbjct: 122 PDAHIATL-EKKTKLEVYLTIGRGRGYRPAE---ENKSPDQPIGVIPIDSIFSPVRRVAY 177 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD------LRDVRQ 239 VE ARV Q+TD DKL +++ET+G+IDP A+R AA IL QL F D LRD Sbjct: 178 AVEQARVGQKTDYDKLTLDIETDGSIDPHAALREAAEILISQLAIFTDADRVIELRDTGG 237 Query: 240 PEVKE-------------------EKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYI 278 E +P D IL +++LEL VRS NCLK I + Sbjct: 238 LGALEPGLAGGGVGGVGGHGAGPGGRPANAMDDIL---IEELELGVRSYNCLKRAGIQTV 294 Query: 279 GDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 GDL+ +TE EL PN GKKS+ E+ + L RGL L Sbjct: 295 GDLISKTENELNAIPNFGKKSIDEVIETLEGRGLHL 330 >UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEJ3_ELUMP Length = 329 Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 129/326 (39%), Positives = 198/326 (60%), Gaps = 31/326 (9%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 +D + V+ + ++ EP E G+GHT+GN+LRRILLS + G AVT V + G +HEYST Sbjct: 14 LDEKTVTPFYGRIIAEPYESGYGHTVGNSLRRILLSGLDGSAVTAVRVRGAVHEYSTIPN 73 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 V+ED++ ILLNLK L V+++GK+ + L S G VTA DI VEI+ I +L Sbjct: 74 VKEDVINILLNLKKLRVKLEGKNREYVYLTASKPGKVTAKDIAEVSGVEIINKDLEIANL 133 Query: 134 TDENASISMRIKVQRGRGYVPAS--TRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR 191 ++ + + I++ +G+GYVPA ++I +RP G + VDA +SP+ ++ Y+VE AR Sbjct: 134 -EQGGKLELEIEISQGKGYVPAEDLSKI-----QRPAGFIPVDAIFSPILKVHYDVEPAR 187 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDP 251 V Q+TD D+LVI++ T+GT++P +A+ +AA +L++ L F + EV PE +P Sbjct: 188 VGQKTDYDRLVIQITTDGTLEPAKALHKAAVLLSQSLHIFT----IEGEEVNAAAPETEP 243 Query: 252 -------------------ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 +L + V+ +EL+ RS NCLK+E ++ + DLV +TE +L Sbjct: 244 LSTTGSVSGVSAVNSKVEELLNQSVEFIELSSRSINCLKSEGVNTVKDLVSKTEDDLKMI 303 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRL 318 N G +SL E+K+ LA LSLGM+ Sbjct: 304 KNFGTRSLDEVKERLAEMNLSLGMKF 329 >UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RPOA_RUBXD Length = 313 Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 183/308 (59%), Gaps = 6/308 (1%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + P +E+ H EPL RG GHTLGNALRR++LS +PG AVT++ I+GV HE+ Sbjct: 5 VAPPRFRVEEEDERHGIFVAEPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEF 64 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 ST EGV+ED+++I+LN+K L R++ + + L ++K G G V +DI DVE+V P Sbjct: 65 STIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDA 124 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I L+ E + M + V+RG+GYVPA ++ D PIG + VD+ +SPVE++ Y V Sbjct: 125 YIASLS-EGGHLDMTLTVERGQGYVPAE---QNKSDADPIGVIAVDSLFSPVEKVQYRVS 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 R R DLD L +E+ T+G + P EA+R A+ L + F + + + Sbjct: 181 ETRAGARVDLDALTLEVFTDGRLGPREALREASRKLIDFFGLFAEGYQGAGAAEEPGRSG 240 Query: 249 FDPILL--RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 P++ RP++DLELTVRS NCLK E + IG L TE EL+ NLG KS+ EI+ Sbjct: 241 GRPVITDERPIEDLELTVRSYNCLKREGVDTIGQLATMTEEELMNIRNLGMKSVDEIRSK 300 Query: 307 LASRGLSL 314 L G +L Sbjct: 301 LEEYGYTL 308 >UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Dictyoglomus RepID=B5YDX0_DICT6 Length = 324 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 196/305 (64%), Gaps = 10/305 (3%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 V +E+ S + + +EPLERG+G T+GNALRRILLSS+ G AV V+IDGV HE G Sbjct: 8 VIVEKRSEDYGRFVIEPLERGYGWTIGNALRRILLSSIEGAAVVSVKIDGVRHELEVLPG 67 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 ++E+ILE+L+NLK L V+++ + IL ++ G VTAAD +V+IV P VI L Sbjct: 68 LKEEILEVLMNLKKLVVKIEDNNSHILEIDTRGPKVVTAADFIVPSNVKIVNPDLVIATL 127 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 E+ M ++V++G+GYV A +++ PIG L++D+ +SPV++++Y VE RV Sbjct: 128 V-EDMPFHMEVEVKKGKGYVSAE---ENKDQNYPIGVLVLDSIFSPVKKVSYTVEKTRVG 183 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 +RTDLD+L++E+ TNG+I PEEA R A+ IL E ++ ++ + P +E KPE + Sbjct: 184 RRTDLDRLILEIWTNGSISPEEAFREASRILMEYFR-LLNEKEFQLP-YEEVKPENTYLE 241 Query: 254 LRP----VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 ++DL L+ R+ N L+ IH I DL+ +T EL+K N G+KSL E+++ L Sbjct: 242 EEKKGLTLEDLGLSTRAYNSLRHAGIHTIEDLLSKTREELMKIKNFGQKSLQELEEKLRE 301 Query: 310 RGLSL 314 +GLSL Sbjct: 302 KGLSL 306 >UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33 Tax=Francisella RepID=RPOA1_FRATN Length = 323 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 135/326 (41%), Positives = 202/326 (61%), Gaps = 19/326 (5%) Query: 2 QGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S EF+ P + E + + KV L P+E+G H LGN++RR+LLSS+ G ++ +V I Sbjct: 4 NNSKQEFV-PNIQLKEDLGAFSYKVQLSPVEKGMAHILGNSIRRVLLSSLSGASIIKVNI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ---GKDEVILTLNKSGIGPVTAADITHD 118 VLHEYST E V+ED++EI+ NLK +A+++ + ++ L++NKSG+ V+A D Sbjct: 63 ANVLHEYSTLEDVKEDVVEIVSNLKKVAIKLDTAIDRLDLELSVNKSGV--VSAGDFKTT 120 Query: 119 GDVEIVKPQHVICHLTDENA-SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 VEI+ I LT++ A S++ + V R G + A E ER +G + VDA + Sbjct: 121 QGVEIINKDQPIATLTNQRAFSLTATVSVGRNVGILSA----IPTELER-VGDIAVDADF 175 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 +P++R+A+ V D + L + ++TNGTI+P A+ +A EQ+ FV LR Sbjct: 176 NPIKRVAF-----EVFDNGDSETLEVFVKTNGTIEPLAAVTKALEYFCEQISVFVSLRVP 230 Query: 238 RQPEVKEE--KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + + DPILL+P+DDLELTVRS+NCL+AE I Y+GDLVQ +E +L+K PNL Sbjct: 231 SNGKTGDVLIDSNIDPILLKPIDDLELTVRSSNCLRAENIKYLGDLVQYSESQLMKIPNL 290 Query: 296 GKKSLTEIKDVLASRGLSLGMRLENW 321 GKKSL EIK +L LSLG++++N+ Sbjct: 291 GKKSLNEIKQILIDNNLSLGVQIDNF 316 >UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 Tax=Bacteria RepID=RPOA_DESDG Length = 348 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 201/323 (62%), Gaps = 13/323 (4%) Query: 6 TEFLKPRLVD--IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +E +KP + E + + K EPLERG+G T+GNA+RR+LL+S+ G A V+I G Sbjct: 16 SELVKPDQISRASESADTMYGKFVCEPLERGYGTTIGNAMRRVLLASLQGAAFVAVKISG 75 Query: 64 VLHEYSTKEGVQEDILEILLNLKG--LAVRVQGKDEVILTLNKSGIGPVTAADITHDGDV 121 V HE++T GV ED+ +I+LNLK LA+ + + L +NKS G V A DI + V Sbjct: 76 VQHEFTTIPGVLEDVTDIVLNLKQVRLAMDTEEPQHLELHVNKS--GEVKAGDIKCNQHV 133 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 ++ + LT E+ ++ ++V+ G+GYVPA DE IG + +DA +SPV Sbjct: 134 MVLNADQHLMTLT-EDVELTFELEVRMGKGYVPADMH-EGLSDE--IGLIALDASFSPVR 189 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV---R 238 ++AY VE ARV Q T+ DKL++E+ T+G+I PE+AI +A I+ +Q+ F++ + + Sbjct: 190 KVAYTVEQARVGQMTNYDKLILEVWTDGSISPEDAIAYSAKIIKDQISVFINFDERISEQ 249 Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 + E + + + L + +D+LEL+VR+ NCLK+ I +G+LVQ++E E+LKT N G+K Sbjct: 250 ENEGRSSASDVNENLFKGIDELELSVRATNCLKSANISLVGELVQKSEGEMLKTKNFGRK 309 Query: 299 SLTEIKDVLASRGLSLGMRLENW 321 SL EI+ VL L GM+++ + Sbjct: 310 SLDEIRRVLGEMSLDFGMKVDGF 332 >UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Tax=Chloroflexi RepID=RPOA_HERA2 Length = 331 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 184/297 (61%), Gaps = 9/297 (3%) Query: 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDIL 79 + + + +EPL+ G+GHTLGNALRR+LLSS+PG AV +++IDG+ HE+S +GV+ED Sbjct: 15 AENYGRFKIEPLDPGYGHTLGNALRRVLLSSIPGAAVIKIKIDGIFHEFSPIQGVREDAT 74 Query: 80 EILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 EI+LN+KG+ +R + V + L+K+G G V A+DI +VEIV P H I L +A Sbjct: 75 EIVLNVKGIRLRSYAERPVKMILSKTGPGVVRASDIECPSNVEIVNPDHYIATLDSSDAR 134 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 + M + V+R RGY+PA R D PIG + VDA ++PV ++ Y VE R+ TD D Sbjct: 135 LDMELTVERHRGYLPAENR-----DPVPIGEIPVDAIFTPVHKVNYVVEHTRIGGMTDFD 189 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--DVRQPEVKEEKPEFDP--ILLR 255 +L++E+ T+GT+ P +A+ AA +L + D D Q +V + P I Sbjct: 190 RLLLEIWTDGTVKPGDALSYAAQVLVQYSSIIADFNRFDDEQEQVGDANGLVIPSEIYDM 249 Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 P++DL+L+ R+ NCLK I +G +++ E +LL NLG+KS+ EI++ L R L Sbjct: 250 PIEDLDLSTRTYNCLKRADITKVGQVLEMDEKQLLAVRNLGQKSMDEIREKLIERNL 306 >UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Tax=Aquificaceae RepID=RPOA_HYDS0 Length = 319 Score = 226 bits (576), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 126/316 (39%), Positives = 194/316 (61%), Gaps = 11/316 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 EF+ P + E+ + + +EPLERG+G T+GNALRR+LLSS+ G A+T V+I+GV H Sbjct: 3 EFIFPMKIYWEEKDKNYGRFVVEPLERGYGTTIGNALRRVLLSSIYGSAITAVKIEGVQH 62 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 E+ST EGVQED+L+I+ NLK + ++ D IL L K+ G V A+DI +V I+ Sbjct: 63 EFSTIEGVQEDVLQIIANLKNVRFDLKDSDLEILYLEKNAPGVVLASDIKTPPNVTIINK 122 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDER--PIGRLLVDACYSPVERIA 184 I + N ++ M I+++RG+GYV S+E E+ G +++DA +SP++ A Sbjct: 123 DAYIATINSANTTLKMEIRIERGKGYV------MSDEMEQIGEAGWVVLDADFSPIKVAA 176 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 + VEA RV RTD DKL E+ TNG + P+ AI++A ++ + + ++ P + E Sbjct: 177 FRVEATRVGDRTDYDKLTFELTTNGVVSPDTAIQQAVELIVKHMNMLTNI-SYEVPTLPE 235 Query: 245 EKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 P E L +++L+++ R+ N LK + IG+LVQ TE EL + N+G+K+LTE Sbjct: 236 PMPPDELMEKLTFSIEELDISQRALNSLKRIGVTTIGELVQLTEDELKSSKNIGRKALTE 295 Query: 303 IKDVLASRGLSLGMRL 318 IK+ L + G SLGM + Sbjct: 296 IKEALKNMGFSLGMNI 311 >UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 Tax=Bacteria RepID=B2UL53_AKKM8 Length = 374 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 185/306 (60%), Gaps = 11/306 (3%) Query: 21 STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILE 80 + H EP E G+GHTLGN+LRR+LL S+ G A+T V I G HE+S+ GV ED+ E Sbjct: 35 ANHLTFVAEPFENGYGHTLGNSLRRVLLGSLEGAAITSVRIAGAQHEFSSLPGVVEDVTE 94 Query: 81 ILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 I+LNLK + + GK+ +L+L G VTAADI D ++V P +IC L D++ Sbjct: 95 IVLNLKKVKFKHNGKEPRLLSLRVHKQGVVTAADIADDTVYQVVNPDQIICTL-DQDTMF 153 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 +V+ GRG+ +T ++ + PIG + +D+ +SPV R+ Y+V+ RV Q TD DK Sbjct: 154 ECEFQVRVGRGF---ATGDENKVPDMPIGVIPIDSIFSPVTRVKYSVQNTRVGQMTDYDK 210 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR-----QPEV--KEEKPEFDPIL 253 L++E+ T+G I P +A+ +A+ IL L+ FV+ D + P EE +L Sbjct: 211 LILEVWTDGRIAPADAMLQASAILRHHLDVFVNYDDKQVNFEEAPSAVQDEETARLRKLL 270 Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 V+++EL+VR+ANCL I +G L ++E E+LK N GKKSL EIKD L GLS Sbjct: 271 NMSVNEIELSVRAANCLNNANITTVGQLAMKSESEMLKYRNFGKKSLNEIKDKLLELGLS 330 Query: 314 LGMRLE 319 LG++++ Sbjct: 331 LGVQVD 336 >UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_PELLD Length = 328 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 197/321 (61%), Gaps = 14/321 (4%) Query: 11 PRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 P +++++ + T + + +PLERG+G TLGN +RR+LL+S+PG A+T +++DGV HE+ Sbjct: 8 PAKIEVDEATHTDQYGRFIAQPLERGYGVTLGNMMRRVLLASLPGTAITGIKVDGVFHEF 67 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDGDVEIVKPQ 127 S+ EGV+ED+ EI+LNLK + + K TL+ G TA DI +G+ E++ Sbjct: 68 SSIEGVREDVPEIVLNLKKVRFKSTCKRSCKTTLSIVGPKDFTAGDIVAQEGEFEVLNKD 127 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 I + +E +++++ + + RGRGY PA S D PIG + +DA Y+P+ + + V Sbjct: 128 LYIATV-NEGSTLNIDVYIGRGRGYTPAE---ESRPDSMPIGYIAIDAIYTPIRNVKFAV 183 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQPEVK 243 E RV QRTD +K+V+++ET+G+I P+++I A I+ E + F + + + E K Sbjct: 184 ENTRVGQRTDYEKMVLDVETDGSITPDDSISLAGRIINEHVTFFANFSPTEEEFTEEEYK 243 Query: 244 EEKPEFDP---ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 ++ EF+ +L ++DL+L+VRS NCL+ I IGDLV R E ELL N GKKSL Sbjct: 244 QQDDEFETMRRLLNTKIEDLDLSVRSHNCLRLAEIDTIGDLVSRKEDELLNYKNFGKKSL 303 Query: 301 TEIKDVLASRGLSLGMRLENW 321 TE+K+ L L GM + + Sbjct: 304 TELKEQLEKFELKFGMDITRY 324 >UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Anaerococcus RepID=C7HSB2_9FIRM Length = 317 Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 197/312 (63%), Gaps = 12/312 (3%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++DI++ + + K L PLERG+G T+GN++RR+LLSS+PG +V+++ IDGVLHE+S Sbjct: 8 KIEILDIDE-ETNYGKFVLYPLERGYGTTIGNSMRRMLLSSLPGSSVSKILIDGVLHEFS 66 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV ED+ E++LN+KG+ ++ K+++ L L+ G VTA DI D +++ P H Sbjct: 67 TIPGVVEDVPELILNIKGIDIKKHTKEDITLFLDIEGPKIVTAKDIKTDAQIDVANPDHY 126 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 + + D+ + + + V G+GY A +++D PIG + +D+ ++PV+ + + VE Sbjct: 127 LATVNDK-GRLFIALDVTDGKGYRVAE---QNKKDTDPIGAIAIDSSFTPVKSVNFTVEN 182 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 RV + TD DKL++E+ T+GTI P+EA+ A+IL E + F DL + P EE+ Sbjct: 183 TRVGESTDYDKLILEVWTDGTITPQEALSEGASILMEDIRFFKDLPGQQFPPEDEEEEIE 242 Query: 250 DPI-------LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + L + +++L+L++RS NCLK + +G++++++E EL N GKKSL E Sbjct: 243 EIEEDNNQMELSKTIEELDLSLRSFNCLKRAGYNTVGEIIEKSESELKDIKNFGKKSLEE 302 Query: 303 IKDVLASRGLSL 314 + D + S GLSL Sbjct: 303 VIDKIHSLGLSL 314 >UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Hydrogenothermaceae RepID=C1DX45_SULAA Length = 326 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 198/325 (60%), Gaps = 21/325 (6%) Query: 4 SVTEFLKPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S+ +F+ P + ++ + T K+ +EPLERG+G TLGNALRR+LLSS+P A+T V+I Sbjct: 3 SLLDFVMPSKIYWDESTKTENFGKLYVEPLERGYGITLGNALRRVLLSSLPSGAITAVKI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ---GKDEVILTLNKSGIGPVTAADITHD 118 GV HE++T +GV ED+ EI+LNLK + +++ +D IL + G G V A DI Sbjct: 63 VGVPHEFTTVKGVIEDVSEIILNLKQIRLKIDENIERDFAILEVE--GPGKVFAKDIKAP 120 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178 +EIV P IC L+ EN + M +++RGRGY + ED IG +L+D +S Sbjct: 121 PGIEIVNPDEYICTLS-ENVKLQMEFRIERGRGY----KTVEELEDINEIGWILIDTSFS 175 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD----- 233 P++R + VE RV +TD D+L++E+ET+GTI P+EA+ ++A IL E Sbjct: 176 PIKRCTFFVEPVRVGDKTDYDRLILEIETDGTITPDEALEKSANILIEHFTLLQKPTVRK 235 Query: 234 ---LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 ++ P+ +E K E D + L +D+LE++ R+ N L+ I+ IGDLV+ +E +L Sbjct: 236 AQVIKKTVAPKTEELKIEEDKLSL-AIDELEISSRAINTLRKLGINTIGDLVKLSEDDLK 294 Query: 291 KTPNLGKKSLTEIKDVLASRGLSLG 315 + ++G+KSL EIKD LA GL L Sbjct: 295 EAKSIGRKSLKEIKDALADMGLELA 319 >UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 Tax=Bacteria RepID=RPOA_FLAPJ Length = 330 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 197/328 (60%), Gaps = 14/328 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ F KP V + + K PLE G+G T+GNALRR+LLS++ G A+T + I+G Sbjct: 2 ALFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSIRIEG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADI-THDGD 120 V HE+ST GV ED+ EI+L+LK + + ++ D +T+ SG +TA D + Sbjct: 62 VDHEFSTIPGVVEDVTEIILSLKQVRFKRQIEDIDNESVTIAISGKNQITAGDFQKYISG 121 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 +++ P+ VIC+L D + +M + +++GRGYVPA +++ IG + D+ ++PV Sbjct: 122 FQVLNPELVICNL-DSKVNFNMEMTIEKGRGYVPAE---ENKKQNAAIGTIFTDSIFTPV 177 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----- 235 + + Y +E RVEQ+TD +KLV E++T+G+I+P++A+ AA +L F D R Sbjct: 178 KNVKYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEA 237 Query: 236 -DVRQPE-VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 ++ Q E EE +L + D++L+VR+ NCLKA + +GDLV + +L+K Sbjct: 238 DEIAQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFR 297 Query: 294 NLGKKSLTEIKDVLASRGLSLGMRLENW 321 N GKKSLTE+ +++A + L+ GM L + Sbjct: 298 NFGKKSLTELDELVAIKNLTFGMDLAKY 325 >UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F5_9FIRM Length = 321 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 186/307 (60%), Gaps = 13/307 (4%) Query: 17 EQVSSTH-AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 E V S H K +EPLERGFG TLGNALRR+LLSS+PG AV ++++GV HE+++ GV+ Sbjct: 15 EYVESDHYGKFVVEPLERGFGTTLGNALRRVLLSSLPGAAVYSIKVEGVYHEFTSIPGVE 74 Query: 76 EDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 ED+ ++LN+K L +++ + L + G VTA DI VE++ I HL + Sbjct: 75 EDVTMMILNIKNLIMKIDDDESYTLRIAAKGPMTVTAGDIICPTGVEVLNKDLEIAHL-E 133 Query: 136 ENASISMRIKVQRGRGYVPA-STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQ 194 E A++ M +K + GRGY+ A + + + IG + D+ Y+P++RI+YNVE RV Q Sbjct: 134 EGATLEMELKARNGRGYISADGNKALYQGSSQGIGTVYTDSIYTPIDRISYNVEPTRVGQ 193 Query: 195 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL-------EAFVDLRDVRQPEVKEEKP 247 D+L+ E+ TNG+I P+ ++ + IL + L E+ D+ V + +V E P Sbjct: 194 DAKYDRLIFEIWTNGSITPQMSLALGSKILIDHLDLLTHVNESVADMESVMK-DVNGESP 252 Query: 248 EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 307 + + ++DL+L+VRS NCLK I + +L QR+E E+++ NLGKKSL E+KD + Sbjct: 253 K--NMQSMAIEDLDLSVRSYNCLKRAGIQTVEELTQRSEEEMMRVRNLGKKSLKEVKDKI 310 Query: 308 ASRGLSL 314 GLS Sbjct: 311 YELGLSF 317 >UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Tax=Bacteria RepID=RPOA_LEPBA Length = 325 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 202/318 (63%), Gaps = 12/318 (3%) Query: 8 FLKPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 F +P+ ++ +T + K EP ERG G T+GN+LRR L+SS+ G A++ + I+GV Sbjct: 10 FKRPKKIEFTTDVNTPNYGKFVAEPFERGIGTTIGNSLRRTLMSSIEGAAISAIRIEGVS 69 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDE---VILTLNKSGIGPVTAADITHDGDVE 122 HE+S EGV ED+ I+LNLK + ++ + +D+ ++ L G G AAD+ D +E Sbjct: 70 HEFSYIEGVAEDVTRIILNLKQVRIKYEPEDKEASKVIHLELKGAGYFRAADLAVDSSIE 129 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ P I L +E+A++ M +++QRGRGYVPA + ++D +G + +D+ +SP+++ Sbjct: 130 IMNPDLHIATL-NEDANLIMDLEIQRGRGYVPAEDK---KKDIEVLGTIPIDSIFSPIQK 185 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL---RDVRQ 239 + + V RV QR+D +KL +E+ T+G++ PE+A+ +AA IL + L F++ + + Sbjct: 186 VLFEVSETRVAQRSDYEKLTMEVWTDGSVSPEDAVAQAAKILKDHLTVFINFEEEIEEEE 245 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 E+ E + L + V++LEL+VRS N L++ I +IG+LV+R+E E+ K+ + ++S Sbjct: 246 EELDEADEKLKAALSKHVEELELSVRSTNVLRSLEIDFIGELVKRSEDEMTKSKHFSEQS 305 Query: 300 LTEIKDVLASRGLSLGMR 317 L E+K L+S GLS GMR Sbjct: 306 LLELKAKLSSMGLSFGMR 323 >UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Clostridiales RepID=C7REF5_ANAPD Length = 318 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 194/311 (62%), Gaps = 13/311 (4%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 +++DI++ + K L PLERG+G T+GN++RR+LLSS+PG +V+++ I+GVLHE+ST Sbjct: 10 QILDIDE-EENYGKFALYPLERGYGTTIGNSMRRVLLSSLPGSSVSKILIEGVLHEFSTI 68 Query: 72 EGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 +GV ED+ EI+LN+KGL V ++V L L+ G VTA DI D V+I P H I Sbjct: 69 DGVVEDVPEIVLNIKGLDVTKHVDEDVTLFLDIEGPKIVTAKDIKADSSVDIANPDHYIA 128 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR 191 + +E + + + + V G+GY + ++++ PIG + +D+ ++PVE++ + VE R Sbjct: 129 TV-NEKSRLFIAMDVTDGKGYRVSD---DNKKESDPIGAIAIDSSFTPVEKVNFTVENTR 184 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP--------EVK 243 V + TD DKLV+E+ TNGTI P+EA+ ++IL E F +L + + P E Sbjct: 185 VGESTDYDKLVMEVWTNGTITPQEALAEGSSILIENFSFFNELPNQQFPPEVEEEEIEEV 244 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 EE+ L +++L+L++RS NCLK +GD+++ +E EL N GKKSLTE+ Sbjct: 245 EEEDSLSEDLAMTIEELDLSLRSFNCLKRAGFDRVGDIIKVSESELKTIKNFGKKSLTEV 304 Query: 304 KDVLASRGLSL 314 + L GLSL Sbjct: 305 IEKLDELGLSL 315 >UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFF3_THET1 Length = 367 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/314 (41%), Positives = 187/314 (59%), Gaps = 15/314 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 SV E P+ V+ ++ + + ++ PL G+G T+GNALRR+LLSS+ G A+T V+I+G Sbjct: 21 SVIELTTPK-VECIGIADNYGRFSISPLAPGYGLTIGNALRRVLLSSLEGAAITSVQIEG 79 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE+ GV+ED+ +I+LN+K + VR V L L +G VTAADI DV+I Sbjct: 80 ARHEFMALPGVKEDVTDIILNIKRIRVRSYSDRPVTLRLEATGPKVVTAADIRPHADVDI 139 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V I L E+A++SM++ VQ+GRGYVPA + +D IGR+ VDA YSPV ++ Sbjct: 140 VSLDQPIATLDSEDATLSMQLTVQKGRGYVPAES-----QDFFEIGRIPVDAIYSPVTKV 194 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE---AFVDLRDVRQP 240 Y VE RV QRTD D L+IE+ T+GTI P EA+ +AA+IL Q + A+ + Sbjct: 195 NYVVERTRVGQRTDYDNLIIEIWTDGTIAPGEALSQAASILVGQFQIIAAYANAETSFGI 254 Query: 241 EVKEEK---PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 E+ E PE D R +D+L L+ R+ N LK I +G ++ +T+ +LL N G Sbjct: 255 ELPTETMSVPEVDN---RSIDELGLSARTLNSLKRAHITTVGQVLSKTKDDLLSIRNFGD 311 Query: 298 KSLTEIKDVLASRG 311 KSL E++ L G Sbjct: 312 KSLHELEAKLKEFG 325 >UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZB0_UNCTG Length = 323 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 119/316 (37%), Positives = 198/316 (62%), Gaps = 9/316 (2%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E L+ ++D + + + + P ERG+GHT+GN+LRRILLSS+ G A+T V+I G H Sbjct: 7 EKLRKLILDEKTATKFYGHFSAGPFERGYGHTIGNSLRRILLSSLEGAAITSVKIAGAFH 66 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 E++ +GV+ED+ +I+LNLK + V++ +G +++ L + K+ G VTA DI + VEI+ Sbjct: 67 EFAVLKGVKEDVAQIVLNLKRIKVKLHSEGPEKLYLKVKKA--GTVTAKDIEANASVEIM 124 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ I ++ D ++ M ++ G+GYV A + + G +++D+ +SP+ ++ Sbjct: 125 NPEQEIANI-DNGTTLEMELEASLGKGYVLAE---EMKSNGYSSGTIILDSLFSPIIKVN 180 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y VE RVEQ + DKL+IE+ T+G++ P++A+ R+A IL + L F D + EV Sbjct: 181 YEVENTRVEQTLNYDKLIIEIWTDGSVSPKDALMRSAEILRKILVIFTD-NAFKTEEVSA 239 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 +K E D IL +PV ++++V++ LK+ I + DLV+ E +LL NL K+S EIK Sbjct: 240 DKEEQDGILGKPVSIMDISVKTLKSLKSAGIETVEDLVKIKEEDLLNFNNLSKRSCEEIK 299 Query: 305 DVLASRGLSLGMRLEN 320 + + GLSLGM++E+ Sbjct: 300 NRVKELGLSLGMKIED 315 >UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha n=3 Tax=candidate division TM7 RepID=UPI00016B2694 Length = 294 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 176/295 (59%), Gaps = 12/295 (4%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 P L +IE SST A T+EPL G+G+TLGN+LRR+L+SS+ G AV +I+G HE++ Sbjct: 7 NPALSNIEDYSSTSAAFTVEPLRGGYGNTLGNSLRRVLMSSIHGAAVISFKIEGATHEFT 66 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T G++ED+++I LNLK + +++ D + L L K G G VTA DI DVEI+ P+ V Sbjct: 67 TVPGIKEDVVDISLNLKSVKIKMHTDDPIELRLEKHGAGQVTAGDIQSHADVEIINPEQV 126 Query: 130 ICHLTDENASISMRIKVQRGRGYV----PASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 IC + D +A + + + GRGY+ + TR+HS+ + +DA +SPV R+ Y Sbjct: 127 ICTVDDPSAKAVIDLVIDSGRGYLSIEDSSETRLHSD-------HIALDAVFSPVIRVRY 179 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ-PEVKE 244 VE+ RV Q T+L+KL++ ++T+G+I P +A AA IL Q A V P + + Sbjct: 180 KVESTRVGQETNLEKLIVVIDTDGSITPRDAFEEAAAILVNQYTALAGSTVVESAPALGQ 239 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 E+ E L ++DL+LT R+AN L I + DLV TE +L + G K+ Sbjct: 240 EREEESNELNTSIEDLDLTARTANALINNDIRTVQDLVTLTEQDLRELKGFGSKA 294 >UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Chloroflexus RepID=B8G8K2_CHLAD Length = 337 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/313 (39%), Positives = 179/313 (57%), Gaps = 14/313 (4%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 + PR V + + + + + PL+RG G +LGNALRR+LLSS+PG AVT ++I GV+HE Sbjct: 8 LITPR-VTLLAAAENYGRFAIAPLQRGHGTSLGNALRRVLLSSIPGAAVTRIKITGVIHE 66 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 ++ GV ED +++LN+KG+ +R V L L K G GPV A DI VEIV PQ Sbjct: 67 FTAIPGVVEDGTQLVLNVKGIRLRSYSDRAVALQLVKQGPGPVFAGDIDAPSTVEIVNPQ 126 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 H +C + DE+ ++ M++ V+RGRG A T PIG + VDA +SP+ R+ + V Sbjct: 127 HYLCTIDDEHTTLEMQLTVERGRGVQLADT-----VSGMPIGEIAVDALFSPIPRVNFLV 181 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKP 247 E + T D+L+IE+ T+GTI P +A+ AA IL + V L QPE E++P Sbjct: 182 EEIGGDPLTGYDRLIIEIWTDGTIKPGDALSHAAQILTQYFSRIVSL---NQPEESEQQP 238 Query: 248 EFDP-----ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 P I R +D+L L+ R+ N L+ I IG L++ + L+ NLG K + E Sbjct: 239 TLPPPIPDEIANRTIDELGLSTRTYNSLRRADIQTIGQLLRLDDRGLMSIRNLGAKGIEE 298 Query: 303 IKDVLASRGLSLG 315 I LA+ G G Sbjct: 299 IHQRLAALGYRSG 311 >UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Bacteroidetes RepID=RPOA_CYTH3 Length = 329 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 121/326 (37%), Positives = 198/326 (60%), Gaps = 21/326 (6%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 S+ F P V +E+ H +PLE+G+G T+GNALRRILLSS+ G A+T +++ G Sbjct: 2 SILSFQMPEKVVMEKADDFHGLFEFKPLEKGYGVTIGNALRRILLSSLEGYAITGIKVPG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADIT-H 117 VLHE+ST GV+ED+ EI+LNLK VR + ++++++++ K A DI Sbjct: 62 VLHEFSTIPGVREDVTEIILNLK--QVRFKKISDVNENKIVVSIKKQ--ASFKAGDIAKF 117 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 +I+ P+ +IC++ D N++ + + +++GRGY+PA ++ E+ G + +DA + Sbjct: 118 TSAYQILNPELLICNV-DSNSNFDIELTLEKGRGYLPAE---ENKPAEQIFGYIPIDAIF 173 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD---- 233 +P++ + Y+VE RVEQRTD +KL++E+ T+G+I PE+A++ AA IL + F D Sbjct: 174 TPIKNVKYSVENTRVEQRTDYEKLILEILTDGSIHPEDALKGAANILIKHFMLFSDQTMT 233 Query: 234 LRDVRQPEVKEEKPEF---DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 V+ E + EF +L + DL+L+VR+ NCLKA I +G+L +++ Sbjct: 234 FEAVKAEEEETVDEEFLHMRKLLKTSLADLDLSVRAYNCLKAADIKTLGELATLDISDMM 293 Query: 291 KTPNLGKKSLTEIKDVLASRGLSLGM 316 K N GKKSL E++ ++ + LS GM Sbjct: 294 KFRNFGKKSLNELEQLIIDKNLSFGM 319 >UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KYM7_9FIRM Length = 312 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 191/301 (63%), Gaps = 16/301 (5%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 +A+ + L +G LGN+LRRILLSSMPG AV+EV++D V HE+S+ GV+ED+ EI+ Sbjct: 20 YARFVCDSLAKGEATVLGNSLRRILLSSMPGSAVSEVKLDSVYHEFSSIPGVKEDVSEII 79 Query: 83 LNLKGLAVRVQGKDE--VILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 +NLK LA+R G E V+ ++ G G V A+DI +VEI+ P V+ HL+ ++A I Sbjct: 80 MNLKNLALRYTGSGEEPVMAYVDYMGEGVVKASDIKVSSEVEIMNPDLVLAHLSGKDAKI 139 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 M +KV +G+GY A+TR HS + IG + VDA YSPV+++ NV VE++ + ++ Sbjct: 140 YMEMKVSKGKGYDGANTRDHS---DLAIGVIAVDAIYSPVKKV--NV---FVEEQGNTER 191 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE----VKEEKPEFDPILLRP 256 L++++ T+ T+ PEEA+ AA IL L+ F+ + D E V ++ D L + Sbjct: 192 LILDVTTDRTMMPEEAVSLAARILQTHLQLFMHM-DTSAKEQGAAVANQEAGRDE-LNKS 249 Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 +D+LEL+VRS NCLK I+ + DL +T +L+K N+G+KSL EI + L S GL L Sbjct: 250 IDELELSVRSYNCLKRAGINTVEDLCAKTMDDLMKVRNMGRKSLDEILNKLESMGLFLSS 309 Query: 317 R 317 + Sbjct: 310 K 310 >UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N3_SPHTD Length = 340 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 192/325 (59%), Gaps = 28/325 (8%) Query: 7 EFLKPRLVDIEQVSSTHAKVT-----LEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 E +PR V THA V +EPLE G+G T+GNALRRILL S+PG A+ V I Sbjct: 3 EIARPR------VQQTHAGVNYGRFEIEPLEPGYGITIGNALRRILLRSLPGTAIVRVRI 56 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI----LTLNKSGIGPVTAADITH 117 V HE+ST EGV+ED+ EI+LNLK VR++ E +L G G V A DI Sbjct: 57 ADVWHEFSTIEGVREDVTEIVLNLK--RVRLKALTESFREGRASLYAQGEGVVRAGDIDW 114 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTR-IHSEEDERPIGRLLVDAC 176 GDVE+V P+HVI L +++A + M + + RGRGY PA T+ I++ IG + VDA Sbjct: 115 PGDVEVVNPEHVIATLDNDDARLEMDLVIARGRGYQPAETQEIYT------IGEIPVDAI 168 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 ++P+E++ Y VE RV Q TD D+L+IE+ T+GTI+P +A+ AA IL + D Sbjct: 169 FTPIEKVNYVVEHTRVGQMTDYDRLIIEIITDGTIEPADALSEAAQILVDHARLIADFN- 227 Query: 237 VRQPEVKEEKPEFDPILL--RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 R+P EE+ + P ++ RP+ +L L+ R N L++ I +G ++ + +LL N Sbjct: 228 -REPSEPEEEEDKTPSIVDNRPLAELGLSPRVLNALRSRQIERVGQVLSLPQEQLLSIRN 286 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE 319 G +SL E+++ LA G +L M E Sbjct: 287 FGPRSLQELRERLAEHGYTLAMDAE 311 >UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Tax=Thermus aquaticus RepID=RPOA_THEAQ Length = 314 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/300 (44%), Positives = 176/300 (58%), Gaps = 15/300 (5%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + LEPLERGFG TLGN LRRILLSS+PG AVT V I+ VLHE+ST GV+ED++EI+ Sbjct: 20 YGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEII 79 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGP--VTAADITHDGDVEIVKPQHVICHLTDENASI 140 LNLK L VR TL GP V A D T DVEI+ P I L +E + Sbjct: 80 LNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNPDLHIATL-EEGGKL 138 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 M ++V RG GYVPA H +D I + VDA +SPV R+A+ VE R+ QRTDLDK Sbjct: 139 YMEVRVDRGVGYVPAER--HGIKDR--INAIPVDAIFSPVRRVAFQVEDTRLGQRTDLDK 194 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD--VRQPEV----KEEKPEFDPILL 254 L + + T+G++ P EA+ +A IL E L F + + PEV K E E D L Sbjct: 195 LTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSKGEKRESAEED--LD 252 Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 P+++L L+ R + LK E I + L+ +L P +G++SL EI+ LA +G +L Sbjct: 253 LPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEEIRQALAKKGFTL 312 >UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20 Tax=Francisella RepID=RPOA2_FRAT1 Length = 318 Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/318 (38%), Positives = 186/318 (58%), Gaps = 11/318 (3%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLH 66 L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I DG + Sbjct: 6 LLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKINDGKVT 65 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 E + +I+LN+K L V + +G + +T SG ++ + + Sbjct: 66 SLEDVIPCDETVADIILNVKSLPVTLAEGVETGTITFELSGSEEEIFSEEAKLSEGLAIT 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 + IC + + + KV++G G+ PA +D G L+DA +SPV + Sbjct: 126 EEVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVVFCDF 177 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP-EVKE 244 ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL +D+ ++ + V++ Sbjct: 178 EIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNILDIEEINKGIFVED 237 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 + +PILL+ V++L LT RS+NCLKA I IG+LVQ+TE ELLK PN GKKSLTEIK Sbjct: 238 PTKDINPILLKHVEELNLTARSSNCLKAVNIRLIGELVQKTENELLKAPNFGKKSLTEIK 297 Query: 305 DVLASRGLSLGMRLENWP 322 D L+ GLSLG +ENWP Sbjct: 298 DKLSELGLSLGTLIENWP 315 >UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Tax=Dehalococcoides RepID=RPOA_DEHSC Length = 330 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 177/298 (59%), Gaps = 14/298 (4%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + +EPLE+GFG T+GN+LRRILLS + G A+T V IDG+ HE+ +ED L+ L Sbjct: 18 YGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGIQHEFCALPKAKEDTLDFL 77 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLK + V E IL L SG VTAADI D E+V P+ + L ++A +++ Sbjct: 78 LNLKNIRVESLSGLEGILYLRASGSKVVTAADIEPSNDFEVVNPELYLLTLDSDDAVLNV 137 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 ++V+ GRGY P + + PIG + VDA ++P+ ++ + E V + T L++LV Sbjct: 138 ELEVELGRGYRPPES-----AENTPIGTIPVDAIFTPIRKVNFTTEPMHVGRETSLERLV 192 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV------RQPEVKEEKPEFDPILLRP 256 +E+ T+GT++P A+ R+A IL +Q + V V +P VK PE + P Sbjct: 193 LEVWTDGTVEPATAVSRSADILVKQFASLVSHSKVVAEIEASEP-VKYTIPEEKYNM--P 249 Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 ++ L+L+VR+ NCL+ I +G+++ R ELL N G KSLTE++D L + GLSL Sbjct: 250 IEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRLKTIGLSL 307 >UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Tax=Deinococci RepID=RPOA_DEIGD Length = 331 Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 32/324 (9%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 +V + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED Sbjct: 11 RVEGDYGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKED 70 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 ++ I+LNLK L V+ LTL G G V A+ D EIV P I L E+ Sbjct: 71 VIRIILNLKELVVKFHAPGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-ED 129 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 + M ++V+ G GYVPA H+ +D I + VDA +SPV R+AY+VE RV Q+TD Sbjct: 130 GKLVMEVRVEEGEGYVPADK--HATKDR--INSIPVDAVFSPVRRVAYHVENTRVGQQTD 185 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-------------------- 237 LD+L++ + T+G++ P+EA+ RA IL ++L F ++ V Sbjct: 186 LDRLILRIWTDGSVGPQEALDRAVEILRDELTVFGNVETVSAAAPELPSVYTPAAPIVSG 245 Query: 238 ----RQPEVKEEKPEFDPILLRP---VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 RQPE+ + L P ++ L LT R + LK E I + L ++ +L Sbjct: 246 YDLPRQPELSINPQPYPADLDTPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLK 305 Query: 291 KTPNLGKKSLTEIKDVLASRGLSL 314 K P +G++SL EIK LA GL+L Sbjct: 306 KVPGIGERSLDEIKQQLAQFGLAL 329 >UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNA8_9FIRM Length = 313 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 +D+E+ + K + PL+RG+G TLGN++RR+LL S+PG A+ V+IDGV HE++T +G Sbjct: 14 IDLEK---NYGKFAIMPLDRGYGTTLGNSMRRVLLGSLPGSAIATVKIDGVGHEFTTIKG 70 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 D+ EIL+N+KG+A++ + VIL LN G VTA DI+ + +VEI H I L Sbjct: 71 SIADVPEILINIKGIALKKFNDEPVILELNVKGPKVVTAGDISENQNVEIANKDHYITTL 130 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDER-PIGRLLVDACYSPVERIAYNVEAARV 192 +E I M + V G+GY R+ E I + VD+ +SPV+++ + V RV Sbjct: 131 NEE-GEIRMDLLVLNGKGY-----RVSDLNKEYCDINSIAVDSSFSPVKKVNFIVGNTRV 184 Query: 193 EQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR--QPEVKEEKP-EF 249 Q D DKL IE+ TNGTI P+EA+ A I + L F L D+ +K+ K + Sbjct: 185 GQSIDFDKLEIEVWTNGTITPQEALSTGAGIFIDYLSLFRSLPDINLDNSSIKDGKILDA 244 Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 + +L + V++L+L++RS NCLK + + D++ + +L K N GKKS+ E+ D + Sbjct: 245 NGVLSKSVEELDLSLRSFNCLKRANLDTVKDIISQDIEQLKKIKNFGKKSVEEVVDKIHE 304 Query: 310 RGLSL 314 GL Sbjct: 305 LGLKF 309 >UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 Tax=cellular organisms RepID=RPOA_SYNJB Length = 335 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + K L PLERG G T+GNALRR+LLS++ G AVT V I GV HE+ST GV+ED++EIL Sbjct: 40 YGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVTHEFSTVPGVREDVMEIL 99 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LN+K L +R + + L G G VTA + DVE++ P+H I L E A + M Sbjct: 100 LNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLA-EGAILEM 158 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + RG GY +S+ I L +D+ + PV ++ Y VEAARV Q + D+LV Sbjct: 159 EFMIGRGHGYRAVD---YSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLV 215 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR-PVDDLE 261 +E+ TNG++ P+EA+ +AA IL + F L++V KP+ D + P+++L+ Sbjct: 216 LEIWTNGSLTPQEALSQAARIL---VGLFAPLQEVSFDAPVPPKPDEDNQKNQIPIEELQ 272 Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR-GLSL 314 L+VR+ NCLK I+ + DL+ TE +LL+ N G+KS E+ L +R GL+L Sbjct: 273 LSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKARFGLTL 326 >UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 Tax=Thermotogaceae RepID=RPOA_THEP1 Length = 336 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 34/338 (10%) Query: 5 VTEFLKPRLVDIEQ----VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + EF+ P+ + +E+ +A+ +L PLERG+ T+GNALRR+LLSS+P A+ V Sbjct: 1 MIEFVIPKKLKVEEEREEKDYYYARFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVR 60 Query: 61 I--DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADIT 116 HEY EGV+EDIL+I+LNLK + RV K + + + K G G + A DI Sbjct: 61 FIKPEKYHEYDYIEGVKEDILDIILNLKKVQFRVNVTVKGTIKMEVEKKGPGELVAGDIK 120 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERP-IGRLLVDA 175 +E+ P I L + A + + + G+G+VP S R +ERP +G + +D Sbjct: 121 TPAGIEVANPDLHIATL-NSKADLFFEVYAEVGKGFVPVSER-----EERPDVGWIPIDG 174 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL------- 228 +SPV ++ + E RV +RTD DKL++E+ T +I PEEA+R+AA IL Sbjct: 175 VFSPVIKVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVTEGL 234 Query: 229 ------EAFVDLRDVRQPEV-----KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHY 277 E ++ + + E+ +EE E + R +D+LEL+VRS NCLK I Sbjct: 235 PELKISEEYIITSEEEEAEIPAVDHEEENRENLDVYNRKIDELELSVRSLNCLKRAKIET 294 Query: 278 IGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR-GLSL 314 IGDL+ +TE ELLK N G+KSL E+K+ L + GL L Sbjct: 295 IGDLLSKTEEELLKIKNFGQKSLDEVKEKLKEKFGLEL 332 >UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Blattabacterium RepID=D0JAU5_BLASB Length = 337 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 186/340 (54%), Gaps = 36/340 (10%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ +F+KP + + + S L+PLE G+G TLGNALRR+LL S+ G AVT + I G Sbjct: 2 AILDFVKPDRIAMSEFSDNKGIFHLKPLEPGYGITLGNALRRVLLGSLKGFAVTSIRIKG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD--- 120 V +E+ST EGV ED+ EI+LN K +R++ K SGI T H G Sbjct: 62 VKYEFSTIEGVVEDVTEIVLNFK--KIRLKQKI--------SGIHKETVNASIHHGKQVT 111 Query: 121 ----------VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 I+ VIC+ DE+ + + ++ GRGYVPA + + ++ IG Sbjct: 112 GGYLNKFISGFHILNENLVICN-KDESIPLEISFTIEEGRGYVPAEE--NKKNNDHLIGT 168 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + +D+ Y+P+ + Y +E RV Q+TD + L +E++T+G+I P+ A+ A+ IL + Sbjct: 169 IPIDSIYTPIRNVKYTIENCRVGQKTDFENLSLEIQTDGSICPKSALMEASKILIQYFSI 228 Query: 231 FV--DLRDVRQPEVKEEKPEFDPILLR-------PVDDLELTVRSANCLKAEAIHYIGDL 281 F + +Q E+ ++K ++D LR + D++L+VR+ NCLK+ +I I DL Sbjct: 229 FSHEKIGKKKQEEINKDK-KYDEEFLRMRTLLKSKLSDMDLSVRTKNCLKSASIESIADL 287 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 V +LK N GKKSL E++ + +GL GM + + Sbjct: 288 VSCNRNNMLKMRNFGKKSLDELESKMKEKGLCFGMEISEY 327 >UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain (DNA-dependent RNA polymerase) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CXD4_DEIDV Length = 333 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 34/326 (10%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 +V + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED Sbjct: 11 RVDGNYGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKED 70 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 +++++LNLK L VR LTL G G V A+ D EIV P I L E+ Sbjct: 71 VIQLILNLKELVVRFHTSGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-ED 129 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 + M ++V+ G GYVPA H+ +D I + VDA +SPV R+AY+VE RV Q+TD Sbjct: 130 GKLVMEVRVEEGEGYVPADK--HATKDR--INSIPVDAVFSPVRRVAYHVENTRVGQQTD 185 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF----------VDLRDVRQP------E 241 LD+L++ + T+G+ P++A+ ++ IL ++L F D+ V P Sbjct: 186 LDRLILRVWTDGSTGPQDALDKSVEILRDELTVFGNVEALPALVSDVAPVYTPTPVPAHN 245 Query: 242 VKEEKPEFDPILLRPVD-------------DLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 V + P + L P D L LT R + LK E I + L ++ + Sbjct: 246 VYDLPPTSGSVNLNPGDYPAELDSPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRD 305 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSL 314 L K P +G++SL EIK LA GL+L Sbjct: 306 LKKVPGIGERSLDEIKQQLAQFGLAL 331 >UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Neorickettsia RepID=RPOA_NEOSM Length = 333 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 188/332 (56%), Gaps = 20/332 (6%) Query: 2 QGSVTEFLKPRLVDIEQVSSTH-AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 +GS+ + V Q+ + A+ +EPL GFG T+GNA+RR+LLSS+ G A++ V Sbjct: 7 KGSLVDVFSSPSVVFNQIREGYCAEFIVEPLRVGFGLTIGNAMRRVLLSSLSGFAISAVG 66 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVR-VQGKDEVILTLNKSGIGPVTAADITHDG 119 I G+ HE+S GV+ED ++ LNLK + ++ + G L L+ + G V + I+ Sbjct: 67 IKGLTHEFSCIPGVREDFADLALNLKKVVLKSISGATCGNLHLSVTDGGAVFSNMISPSH 126 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI-GRLLVDACYS 178 D E+V +IC++ E S+ M +KV G GYV + + +DE + G + +DA Y+ Sbjct: 127 DFEVVNGDLLICNVA-EGVSLEMEMKVSSGFGYV---SSVSVRKDEYDLEGAVPIDAIYN 182 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 PV + + V+ DKL++ +ETNG +DP+ A+ A+ IL+ Q F+++ D Sbjct: 183 PVRAVNFTVKPTSAGSFAGHDKLILYVETNGAMDPKTAVLEASKILSTQARCFLNIAD-- 240 Query: 239 QPEVK----------EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 PE + ++ + +L +D L L+ R+ CL E I YI DLV RTE + Sbjct: 241 -PEHRVHGVPCGVSTSDRNDASDLLSARIDRLYLSARARKCLNGENIVYIRDLVSRTEAD 299 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 LLK PN G++SL E+K L S+GLSLGM L++ Sbjct: 300 LLKAPNFGRRSLEEVKKELFSKGLSLGMNLDS 331 >UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) n=2 Tax=Bacteria RepID=B0VI04_9BACT Length = 391 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 179/315 (56%), Gaps = 10/315 (3%) Query: 11 PRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 P VD ++ S T+ K + PLE G+G T+GN LRRILLSS+ G AV V I+G+ HE+ Sbjct: 10 PNEVDYDKASYSRTYGKFEIGPLEPGYGTTIGNTLRRILLSSIQGAAVRFVRIEGLHHEF 69 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 G D ++++L LK L + +EV L L G G +TA+ I V+I+ Sbjct: 70 CPIPGTNSDYIDLILRLKQLVISSSSVEEVPLVLEHKGKGVITASMIQETAYVKIINKDL 129 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 + + D + + + V GRGYV A + + +G + VD+ YSPV ++ ++V Sbjct: 130 YLLEVVD-DIDFRLEMIVGIGRGYVSAD---RQNPEGKAVGFIPVDSIYSPVLKVNFSVS 185 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATIL---AEQLEAF-VDLRDVRQPEVKE 244 RV++R + D+L++E+ TNG ++P A+ AA IL A ++ F ++ + +R E+ Sbjct: 186 HQRVKERMNFDRLIMEIYTNGAVEPSIALFLAAKILKDMAAKISLFEIEPQYIRDIELDP 245 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 E E + IL V ++EL+VR+ANCL I IGDLV +TE E+LK N GKKSL EI Sbjct: 246 ELEEKERILKTSVKEIELSVRAANCLAQAKIETIGDLVSKTEAEMLKFRNFGKKSLEEIV 305 Query: 305 DVLASRGLSLGMRLE 319 L L LGM +E Sbjct: 306 QKLKKYDLHLGMDVE 320 >UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 Tax=Fusobacteriaceae RepID=RPOA_FUSNN Length = 326 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 182/306 (59%), Gaps = 16/306 (5%) Query: 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDIL 79 S+ + +EPL RG+G+TLGNALRR+LLSS+PG A+ + I+GVL E++ +GV+E + Sbjct: 19 SNYKGQFIVEPLYRGYGNTLGNALRRVLLSSIPGAAIKGMRIEGVLSEFTVMDGVKEAVT 78 Query: 80 EILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 EI+LN+K + V+ + E ++L+ G V AADI D +EIV P+ VIC +T + + Sbjct: 79 EIILNVKEIVVKAESSGERRMSLSIKGPKVVKAADIVADIGLEIVNPEQVICTVTTDR-T 137 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 + + V G G+V + ++ + P+ + VDA Y+P+ +++Y ++ + TD D Sbjct: 138 LDIEFIVDTGEGFVVSE---EIDKKDWPVDYIAVDAIYTPIRKVSYEIQDTMFGRMTDFD 194 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF--DPILLRPV 257 KL + +ET+G+I+ +A+ A +L L+ F+++ + + ++++ E +P+ ++ + Sbjct: 195 KLTLNVETDGSIEIRDALSYAVELLKLHLDPFLEIGN-KMENLRDDIEEMIEEPMDIQVI 253 Query: 258 DD---------LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 DD L+LTVRS NCLK I + L + ELLK NLGKKSL EI + + Sbjct: 254 DDKSHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKSLDEILEKMK 313 Query: 309 SRGLSL 314 G L Sbjct: 314 DLGYDL 319 >UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 Tax=Chlamydiales RepID=RPOA_CHLT2 Length = 377 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 176/321 (54%), Gaps = 27/321 (8%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 A+ +PLE+G GHTLG+ALRR LL + A+ + GVLHEY EG+ ED+ I+L Sbjct: 35 ARFVADPLEKGMGHTLGSALRRALLIGLEAPAIVSFSMTGVLHEYMAVEGIIEDVTNIVL 94 Query: 84 NLKGLAV-----------RVQGKDEVILTLNKS------GIGPVTAADITHDGDVEIVKP 126 NLKG + R K ++++ S G VT D+ +G E V P Sbjct: 95 NLKGSLLKKYPLQDCEGGRCSQKLRATISVDASDLAAAGGQKEVTLGDLLQEGTFEAVNP 154 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 +HVI +T + + ++V GRGY P S RI E ER + +++DA +SPV + Y Sbjct: 155 EHVIFTVT-RPMQLEVMLRVAFGRGYSP-SERIVLE--ERGMNEIVLDAAFSPVVLVNYF 210 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL---RDVRQPEVK 243 VE RV Q TD D+LV+++ET+G + P+EA+ A IL++ F + R V + + Sbjct: 211 VEDTRVGQDTDFDRLVLQVETDGRVAPKEAVAFATQILSKHFSVFEKMDEKRIVFEEAIS 270 Query: 244 EEKPEFDPILLRPV---DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 EK D IL + V +++EL+VRS NCL I IG+LV E LL+ N GKKSL Sbjct: 271 VEKENKDDILHKLVLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNFGKKSL 330 Query: 301 TEIKDVLASRGLSLGMRLENW 321 EIK+ L L LGM L + Sbjct: 331 CEIKNKLKEMKLELGMDLSQF 351 >UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Tax=Mollicutes RepID=RPOA_MYCCT Length = 317 Score = 186 bits (473), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 115/317 (36%), Positives = 188/317 (59%), Gaps = 14/317 (4%) Query: 7 EFLKPRLVDI-EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F++P + + E + K ++ PLERGFG TLGNA+RR LL++ PG +V ++I G Sbjct: 3 QFVRPEFILLKEGQDKNYGKFSVSPLERGFGITLGNAIRRTLLAATPGASVYAIKIAGAT 62 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGI-GPVTAADITHDGD 120 HE+++ G+ E++ +I+LN+K L +R+ DEV+ +S I GPV A D+ Sbjct: 63 HEFTSIPGIIENVTKIILNIKQLVLRIDTSIYSDDEVVQLKIRSDIQGPVYAGDLELPAG 122 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI--GRLLVDACYS 178 VE++ +I ++ E + + + + RGY ++E+ I G + +D+ YS Sbjct: 123 VEVLNQDLLIATIS-EGGILDLVLYAKNSRGY----KTFKDNKNEKNIEPGMITIDSNYS 177 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDV 237 P+ ++AY+V++A++ + DL+KL +E+ T+G+I +AI A+ IL LE F+DL R++ Sbjct: 178 PIIKVAYSVDSAKIGRAIDLEKLELEVTTDGSITAIDAISIASKILVAHLEFFIDLNREI 237 Query: 238 RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 EV D L R V++L+ T RS NCLK I+ + +LV + E E+ NLG+ Sbjct: 238 SVLEVIGVNQTDDKELDRTVEELDFTQRSLNCLKRAGINTLRELVTKNEDEIGSIRNLGR 297 Query: 298 KSLTEIKDVLASRGLSL 314 KSL EIKD +AS GL+ Sbjct: 298 KSLKEIKDKVASLGLAF 314 >UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 Tax=Borrelia burgdorferi group RepID=RPOA_BORAP Length = 344 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/326 (35%), Positives = 180/326 (55%), Gaps = 23/326 (7%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--- 63 EFLK Q ++ K T+ P ERGFG T+GN LRR+LLSS+ G A+T + + Sbjct: 17 EFLKS------QDDGSYGKFTIYPFERGFGVTIGNTLRRVLLSSIEGYAITAMRVQSNNK 70 Query: 64 ------VLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSG--IGPVTAAD 114 V E+ GV ED LE++ N+K + +++ +G+ ++ + SG + A+ Sbjct: 71 DSSSKVVSSEFDLIPGVSEDTLEVIANIKNIHLKLREGEQRKTISFSVSGKDTNVLKASH 130 Query: 115 ITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVD 174 DG VE+ VI L+ + ++ ++ GRGYV + E+ + + +D Sbjct: 131 FERDG-VEVFNKDLVIATLS-HDVNLDFEFQINYGRGYVSSEQNSKYLEE---VNVIALD 185 Query: 175 ACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234 + +SP+E+++Y+VE RV QR+D DKLV+E+ T G I ++AI++AA+I+ E L VD Sbjct: 186 SIFSPIEKVSYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLFPLVDF 245 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 D + K E +L ++ L+L+VRS NCL E + +G+L+ + EL K N Sbjct: 246 EDSVSVSFDKSKSESSNLLDMSIEKLDLSVRSLNCLAKENVRTLGELISKNAEELSKARN 305 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLEN 320 GKKSL EI + L S L LGM E+ Sbjct: 306 FGKKSLEEIIEKLGSYQLFLGMSKED 331 >UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA10_9FIRM Length = 318 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 178/313 (56%), Gaps = 11/313 (3%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++ IE+ ++ K EPLE +G LGNALRR+LLSS+PG A+ + IDGV HE++ Sbjct: 4 KYKISTIEE-TTKEGKFLFEPLEYRYGTPLGNALRRVLLSSIPGGAIFSIRIDGVYHEFT 62 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGP--VTAADITHDGDVEIVKPQ 127 +GV+ED+ I+LNLK L + + D + TL GP V A DI V ++ Sbjct: 63 GIKGVKEDVASIILNLKQLILDIDIHDNEVYTLRIDQEGPKTVVAGDIECPTGVTVLNKD 122 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPA--STRIHSEEDERPIGRLLVDACYSPVERIAY 185 IC L+ E SI M ++ + GRG+V + + R++ E + P+G + D+ YSPV+ ++Y Sbjct: 123 LPICTLS-EGGSIHMELQARLGRGFVRSDVNKRMYQNEGQ-PLGIIYTDSLYSPVKNVSY 180 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245 + E + D L +E+ T+ TI P EA+ AA IL + L + + ++E Sbjct: 181 VANPIKSEDGSMYDSLELEITTDETIKPSEALAVAAKILRDHLSILASVDEASLEVKEQE 240 Query: 246 KPEFDPILL----RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + ++ + ++DLEL+VRS NCLK I + +L Q+TE E++ NLGKKSL Sbjct: 241 VEVSEEPVVHTTHKMIEDLELSVRSYNCLKRAGIATVDELTQKTEEEMIHVRNLGKKSLQ 300 Query: 302 EIKDVLASRGLSL 314 E+KD + GLS Sbjct: 301 EVKDKIKELGLSF 313 >UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Tax=Brachyspira RepID=C0QW20_BRAHW Length = 324 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 180/315 (57%), Gaps = 12/315 (3%) Query: 11 PRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 P V E+ ++ T+ K +P ERG+ T+GNALRR+LLSS+PG A+T ++IDGV +E+ Sbjct: 13 PHRVTFEKKDLTPTYGKFIAQPFERGYAVTVGNALRRVLLSSIPGYAITTIKIDGVSNEF 72 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAAD-ITHDGDVEIVKP 126 G++ED + ++++LK + V + D + + K G +TA D + D + ++ P Sbjct: 73 ENVPGMKEDTIVMIMHLKNVVVSLPSHMDTKTIHMKKEGPCVITAGDLVADDTEAQVHNP 132 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 + I + E + M I+++ G YVPA I ED I + +DA YSP+ + YN Sbjct: 133 DYYIATIA-EGYTFEMDIQIEGGYSYVPAEMNIELLED---INAIAIDAIYSPIVSVKYN 188 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK-EE 245 V+ RV QR D KL +E+ET G I P++A+ +AA IL + L+ F+D + + K EE Sbjct: 189 VDPIRVGQRIDYGKLTLEIETKGNIAPDKALSQAAKILRDNLKHFMDPEEANGDDEKIEE 248 Query: 246 KPE---FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 P+ D + + ++++E +VR+AN L A + + + +T+ +LL+ + + E Sbjct: 249 TPKDSVLDSLKGKHIEEVEFSVRTANFLMASDLKTLDKVAVKTDADLLRLIGANEMIIEE 308 Query: 303 IKDVLASRGLSLGMR 317 IK+ LA LGMR Sbjct: 309 IKEKLAEYNAHLGMR 323 >UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Tax=Treponema RepID=RPOA_TREDE Length = 351 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/324 (34%), Positives = 175/324 (54%), Gaps = 19/324 (5%) Query: 8 FLKPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---- 61 F KP+ ++ Q ST + K T P E GFG T+GN LRRILLSS+ G A++ V I Sbjct: 10 FKKPKGLEFAQQESTESYGKFTASPFETGFGTTIGNCLRRILLSSIQGYAISAVLITSHD 69 Query: 62 -DGVLH----EYSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGPVTAADI 115 DGV H E+ V ED LEIL LK + +R+ + E G +T+ D Sbjct: 70 ADGVPHTISSEFENIPNVSEDTLEILNKLKQIRLRLSDESEQGDFHFEFKGPASITSKDF 129 Query: 116 THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDA 175 +G +EI+ + L + A++S ++V GRGYVPA +E+ +G + +DA Sbjct: 130 AVEGQLEILGEPFYVMELM-KGANVSFDVQVDFGRGYVPAEV---NEKYIEIVGTIPMDA 185 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 Y PV +++Y +E RV QR D DKL++E+ T+ T+ PE+ + AA I + F++ Sbjct: 186 IYGPVLKVSYAIEPCRVGQRNDYDKLILEIWTDSTVRPEDVLGEAAKIAKDHFSIFINFN 245 Query: 236 D---VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + + + E E+ +L ++ L+ +VR+ NCL + I +G+L Q++E E+ Sbjct: 246 ENDYLGEDEDDNEEAVIKQLLATSINTLDFSVRAKNCLDSAGIKTLGELAQKSEDEIESM 305 Query: 293 PNLGKKSLTEIKDVLASRGLSLGM 316 N+G+ +L EI LA L LGM Sbjct: 306 RNVGRMTLNEIHAKLAEYNLRLGM 329 >UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Tax=Emiliania huxleyi RepID=RPOA_EMIHU Length = 309 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 171/296 (57%), Gaps = 20/296 (6%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 AK +EPL +G G T+GNALRR LLS++PG A+ I GV HE+S GV+ED LEILL Sbjct: 19 AKFCIEPLSKGQGITIGNALRRTLLSNIPGTAIVGTRISGVDHEFSVIPGVKEDALEILL 78 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK L + + +I LN G VTA DI D+E++ PQ I +TD + + M Sbjct: 79 NLKQLVFKGNLNEPIITRLNIQGPCIVTAGDIDIPTDLELIDPQQYIATITD-FSHLEME 137 Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVI 203 +++G YV + P G L VDA ++P++++ + VE + ++R + ++L+I Sbjct: 138 FILEQGESYVLS----EKTASNNPRGFLAVDAVFTPIKKVNFFVETSSSKERLEKERLII 193 Query: 204 EMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKP-EFDPILLRP------ 256 E+ETNG+I P EA+ A AE+L + L V ++ E P E + I+ Sbjct: 194 EIETNGSILPLEALNLA----AERLSSLFKL--VNSADLTAEFPTEVENIVQVSQTDVTG 247 Query: 257 --VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 +++LEL+VR+ NCLK IH +G+L++ ++ LL+ N G+KS E+ + L R Sbjct: 248 VLIEELELSVRAYNCLKRAQIHTLGELLKYSKENLLEFKNFGQKSANEVCENLHER 303 >UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragment) n=1 Tax=uncultured bacterium RepID=A8DR58_9BACT Length = 219 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 136/198 (68%), Gaps = 8/198 (4%) Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITH 117 ++IDGVLH+YS +G+QED++E+LLNLK LA + ++ V + KS GPV A+D Sbjct: 19 IKIDGVLHDYSALDGLQEDVVEVLLNLKELAFNIASDENTVAINFEKSSPGPVLASDFAD 78 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 ++E+ P VIC++T + + M + QRGRGY A R + +E+ IG L +DA Y Sbjct: 79 QSNIEVFNPNLVICNVT--SGVLKMELTAQRGRGYELAVNR-DVDRNEKSIGVLQLDASY 135 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL--R 235 SPV++++YNVE AR R DLDKLVI++ETNG I PE+AIR ++TIL +QL AFV+L + Sbjct: 136 SPVKKVSYNVEVARFGGRADLDKLVIDLETNGAISPEDAIRISSTILQQQLLAFVNLDSK 195 Query: 236 DVRQPEVKEEKPEFDPIL 253 +++P KEE EFDPIL Sbjct: 196 LLKEPTKKEE--EFDPIL 211 >UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Tax=Acholeplasmataceae RepID=RPOA_AYWBP Length = 330 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 114/322 (35%), Positives = 181/322 (56%), Gaps = 19/322 (5%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +F+KP V+ + K T++PLERG+G T+GNALRR+LLSS+PG A+ V+I GV Sbjct: 5 KFIKPFFVEEIDENPISGKFTIKPLERGYGITVGNALRRVLLSSLPGAAIVNVKIQGVEQ 64 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI---LTLNKSGIGPVTAADITHDGDVEI 123 E++T GV ED++ I+LNLK + V + + L L G +TAA V+I Sbjct: 65 EFTTIPGVYEDVMTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTAASFELPAGVKI 124 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPAS-TRIHSEEDERPIGRLLVDACYSPVER 182 + P H I L+D+ M + +++G GYV A ++H E +G + +D+ ++PV Sbjct: 125 INPDHYITTLSDD-VCFHMTVTIKKGIGYVGAKENKVHI---ENQVGVIAIDSLFTPVVN 180 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE- 241 ++Y VE ++ + D+L IE+ TNG + +EA+ AA+IL + V+L ++P Sbjct: 181 VSYQVE----KKLGNKDELTIEITTNGALLAKEALATAASILVDHFNVLVELS--QKPAH 234 Query: 242 ---VKEEKPE-FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 V E K E + +L ++ L+L+VR N LK I + LV+ +E E++K +LG+ Sbjct: 235 VEFVSESKKEAHNYVLDLEIEQLDLSVRLFNSLKRAGIDTVASLVKLSEKEVVKLKSLGR 294 Query: 298 KSLTEIKDVLASRGLSLGMRLE 319 KS E+KD GL L+ Sbjct: 295 KSFQELKDKFLEYGLEFNDYLK 316 >UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUE9_9FIRM Length = 314 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 193/321 (60%), Gaps = 21/321 (6%) Query: 7 EFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +F KP ++I ++S + EPLERG+G TLGN+LRR++LSS+PG A++ ++I+ + Sbjct: 3 DFTKPN-IEILEISEDKRFGRFVCEPLERGYGSTLGNSLRRMMLSSLPGAAISAIKIENL 61 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI-LTLNKSGIGPVTAADITHDGDVEI 123 + + G+QE E+L NLK +AV + + E + ++++ SG + A D + ++++ Sbjct: 62 SGDKVS--GIQESFPELLTNLKSIAVILPEEVESLEVSVDLSGKSEILAEDFIGESELKL 119 Query: 124 VKP-QHVICHLTDENASISMRIKVQRGRGYV--PASTRIHSEEDERPIGRLLVDACYSPV 180 P +H+ SIS+ I RG+GY A R+ + ++ + I DA Y+PV Sbjct: 120 SNPTEHIATVEAGAQGSISLFI--SRGQGYSGEKAEGRVEAPKEYQDI-----DALYTPV 172 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQ 239 ER+ ++E RV TD D+L +++ TNG++ PE+AI +AA +L + L+ FV L +V Sbjct: 173 ERVNMSIENTRVGNMTDYDRLTLDVYTNGSMSPEDAISKAAQMLFQHLDLFVALSEEVAA 232 Query: 240 PEVKEEKPEFD--PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 E+ +KPE + ++ +D+LEL+VRS NCLK I+ + +L +T +++K NLG+ Sbjct: 233 TELMVDKPEDEKGKVMEMNIDELELSVRSYNCLKRAGINTVSELTSKTPEDMMKVRNLGR 292 Query: 298 KSLTEIKDVLASRGLSLGMRL 318 KSL E+ L R L+LG+ Sbjct: 293 KSLEEVLAKL--RDLNLGLSF 311 >UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Tax=Epsilonproteobacteria RepID=RPOA_ARCB4 Length = 332 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 115/330 (34%), Positives = 186/330 (56%), Gaps = 24/330 (7%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 T FL P V+IE +S AK++ P E GF TL + LRR+LLSS GCA V+I+G Sbjct: 7 TPFL-PTEVEIEAISDNEAKISAYPFEDGFAITLAHPLRRLLLSSSVGCAPIAVKIEGAS 65 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ + G+ ED+ ++NLK + ++ G K++V++ + +G + D+ + +V++V Sbjct: 66 HEFDSLRGMLEDVAIFVINLKNIKFKINGDKEQVVVEYSFNGPRDIKGEDLIN-SEVDVV 124 Query: 125 -KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI---GRLLVDACYSPV 180 K H+ +D N + S + +Q+G GY+P+ ED R I + +DA ++PV Sbjct: 125 SKDAHLATINSDCNLTFS--VILQKGIGYMPS-------EDIRDIVGADYIPIDAFFTPV 175 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF---VDLRDV 237 +++ Y++E VE + +K V ++TNG I P A + A +++ Q+ F DL +V Sbjct: 176 KKVVYDIEKMLVEDNPNYEKAVFRVQTNGQISPVTAFKEAVSVMYSQMSVFNKVFDLSEV 235 Query: 238 RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + EE E +++R +DDL L+ RS N L + Y+G+LV +EVE+ NLGK Sbjct: 236 AVSDSGEEPVELKELVIR-IDDLNLSARSFNSLDRAGLKYLGELVLMSEVEVKNIKNLGK 294 Query: 298 KSLTEIKDVLASRGLSLGMRLENWPPASIA 327 KS EI + L SLG +EN P ++A Sbjct: 295 KSYDEIAEKLE----SLGYPVENTLPENVA 320 >UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=Borrelia RepID=B2S0K5_BORHD Length = 344 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 174/306 (56%), Gaps = 16/306 (5%) Query: 22 THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--------VLHEYSTKEG 73 ++ K + P E+GFG T+GN LRR+LLSS+ G A++ + I V E+ G Sbjct: 27 SYGKFIIYPFEKGFGVTIGNTLRRVLLSSIEGYAISAMRIQSNQGGSLKIVSSEFDLIPG 86 Query: 74 VQEDILEILLNLKGLAVRV-QGKDEVILTLNKSG--IGPVTAADITHDGDVEIVKPQHVI 130 V ED LE++ N+K + +++ +G ++++ +G + A + +G VE+ VI Sbjct: 87 VVEDTLEVIANIKNIHLKLDEGVKSATISVSVNGKDTNVLKAVHLEREG-VEVCNKDLVI 145 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 L+ E A++ +V GRGYV + H+ + + + +D+ +SP+E++ Y+VE Sbjct: 146 ATLSSE-ANLDFEFQVDYGRGYVSSE---HNAKYLEEVNTIALDSIFSPIEKVTYSVEDT 201 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD 250 RV QR+D DKLV+E+ T G I ++AI++AA+I+ E L V+ D V + + Sbjct: 202 RVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLLPLVNFEDKVVHSVDDSEFRDS 261 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 IL ++ L L+VRS NCL E + +G+L+ ++ EL K N GKKSL EI + L+ Sbjct: 262 DILNMNIEKLNLSVRSLNCLTKENVKTLGELISKSAEELSKARNFGKKSLEEIVEKLSVY 321 Query: 311 GLSLGM 316 GL LGM Sbjct: 322 GLFLGM 327 >UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CGQ3_9PLAN Length = 208 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 133/210 (63%), Gaps = 4/210 (1%) Query: 19 VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDI 78 ++ST+ EP ERGFG T+ N+LRRILLSS+ G +VT V+I GV HE++T GV EDI Sbjct: 1 MTSTYGMFVAEPFERGFGATIANSLRRILLSSLEGSSVTRVKIQGVQHEFTTIPGVVEDI 60 Query: 79 LEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENA 138 EI LNLK L V+ L + K G VT AD+ D VE++ VI +TD+ Sbjct: 61 TEICLNLKSLIVKNSSSTSKTLRIEKHERGVVTGADVITDDQVEVINKDLVIATMTDD-V 119 Query: 139 SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDL 198 ++M + ++ GRGY PAS H++ D +G + +DA +SPV R+ Y +E RV QRT+ Sbjct: 120 PLNMELTIENGRGYSPASE--HAQHDSE-VGVIPLDATFSPVVRVRYKIEDTRVGQRTNY 176 Query: 199 DKLVIEMETNGTIDPEEAIRRAATILAEQL 228 DKL++E+ TNGT+ P+ A+ A+ IL + L Sbjct: 177 DKLILEIWTNGTVKPDMALVEASKILRKHL 206 >UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R017_PHYMT Length = 331 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 22/309 (7%) Query: 22 THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEI 81 + + ++ LE +G T+GN LRR+LLSS+PG + VEI GV HE+ST GV ED++ I Sbjct: 21 SFGRFIIQNLEPSYGVTIGNPLRRVLLSSLPGAGIVYVEIKGVDHEFSTIPGVYEDVMSI 80 Query: 82 LLNLKGLAVRVQGKDEVI---LTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENA 138 +LNLK + + V D+ + L +G VTA+ ++I+ P+ I +L ENA Sbjct: 81 VLNLKQVVISVDSIDDDFEQEMELFVTGKQKVTASCFEQVEGIKIINPEQEIANLVSENA 140 Query: 139 SISMRIKVQRGRGYVPA-STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 S+ M + ++RG GYV A +I++++ + G + +D Y+PV +++Y++E ++ D Sbjct: 141 SLKMTVLIKRGIGYVSAEENKIYTKKKK---GLISIDTLYTPVSKVSYDIE----KKLGD 193 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD-------VRQPEVKEEKPEFD 250 ++L IE+ TN + ++A+ A+ IL + +L + + +P K+E P Sbjct: 194 KEELAIEITTNKSTTAKDALTTASKILFDHFSFLANLNEKKDQISFIYKP--KKELPN-K 250 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + LR +D LEL+VR NCLK I + DLV E E+ K +LG+KS E+K+ Sbjct: 251 SLELR-IDQLELSVRLFNCLKKSGIEKVSDLVLLKEEEVFKLKSLGRKSFNELKEKFKQH 309 Query: 311 GLSLGMRLE 319 GL LE Sbjct: 310 GLEFQNDLE 318 >UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas paramecium RepID=D2ISB5_9CRYP Length = 310 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 165/304 (54%), Gaps = 24/304 (7%) Query: 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDIL 79 +S + + T +PL+ G G T+GNALRR+LLS + G A+T + G +HE+S G +ED+L Sbjct: 17 TSYYGRFTFQPLKLGQGLTIGNALRRVLLSDLEGIAITSARVSGSVHEFSEIPGTREDVL 76 Query: 80 EILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 EILLNLK + ++ KD I L G VTA+D V+ V P I + D N Sbjct: 77 EILLNLKKIVLKGSSKDAGIARLKVQGPCIVTASDFELPSFVKAVDPSQYIATICDSNV- 135 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 + + + + GRGY ++ + + L +DA + PV ++ Y +E + + Sbjct: 136 LEIEVSISAGRGY----KLVNRQSLDSGKDSLELDAVFMPVNKVNYTIEEINTDFPIAEE 191 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEA-----FVDLRDV---RQPEVKEEKPEFDP 251 KL +E+ TNG++ PEE++ +AAT+L + L D D ++PEVK Sbjct: 192 KLTLEIWTNGSLTPEESLMQAATVLTDILAPIQRIHLTDEEDFPADKEPEVKN------- 244 Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-R 310 P++DL+L+VR+ NCLK I Y DL+ R++ ELL+ N GKK E+ L + Sbjct: 245 ---LPIEDLKLSVRAYNCLKQINIDYTEDLLTRSQEELLEIKNFGKKCCEEVTQALKNIV 301 Query: 311 GLSL 314 GL+L Sbjct: 302 GLTL 305 >UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S8_9FIRM Length = 321 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 107/296 (36%), Positives = 165/296 (55%), Gaps = 17/296 (5%) Query: 28 LEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKG 87 EPLERGFG T+GN + R LL+S+PG + ++ G + + +G+ EDI I LNLK Sbjct: 30 FEPLERGFGITIGNTICRTLLTSVPGTRIVGFKVSGFDGKATMVDGILEDIYRISLNLKA 89 Query: 88 LAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQ 147 + + G+ L ++K G + AADI VE+V P+ VIC L ++ AS+ M I Sbjct: 90 VQLYNDGEGFQTLHISKKGPATIQAADIICPEAVEVVDPEQVICTL-EKGASLEMEIYAV 148 Query: 148 RGRGYVPA-STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEME 206 G GY + ++ + E + ++DA ++P+ + Y E ARV DK+ I +E Sbjct: 149 TGTGYKSSIENKVSYDFGEDVV---VLDATFTPIRKADYLSEPARVGLDKKYDKVHINVE 205 Query: 207 TNGTIDPEEAIRRAATILAEQLEAFVDLRD--------VRQPEVKEEKPEFDPILLRPVD 258 T+GTI P +AI AA + E L+ + + D V++P+V++ K + ++ Sbjct: 206 TDGTITPLQAITMAAKVCMENLDEVLTVSDLELEESFMVQKPQVEDVK----KVNTMMIE 261 Query: 259 DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 DL+L+VRS NCLK I + +L Q+TE E++ NLGKKSL E+KD + GL Sbjct: 262 DLDLSVRSYNCLKRAGIQTVDELTQKTEDEMMHVKNLGKKSLKEVKDKMYQLGLFF 317 >UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma gallisepticum RepID=RPOA_MYCGA Length = 325 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 183/324 (56%), Gaps = 33/324 (10%) Query: 7 EFLKPRLVDI-EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +FL+ + I E + K ++PLE+GFG TLGNALRR++LS +PG +V ++I G+ Sbjct: 3 QFLRYNINVIKEDNDKNYGKYIVKPLEKGFGITLGNALRRVMLSHLPGSSVFALKIKGIS 62 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGK---DEV----------ILTLNKSGIGPVTA 112 HE+ GV+ED+ +I+LN+K L V + DE ++T+ + G + A Sbjct: 63 HEFGFIPGVKEDVTQIILNIKNLVVWISDNMITDETLSETPIEKWPVMTIRANKAGIIKA 122 Query: 113 ADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLL 172 DI E+ IC L+ E+A +++ I RGRG+ A+ E+ IG L Sbjct: 123 GDIECPLGFEVFNKDLEICTLS-EDAEVAIDIYATRGRGFKTAA------ENRSEIGSLS 175 Query: 173 ---VDACYSPVERIAYNVEAARVEQRTDL--DKLVIEMETNGTIDPEEAIRRAATILAEQ 227 +D+ ++P+ ++ Y+VE E+ +D+ DKL+IE+ TNG I +AI A+ IL++ Sbjct: 176 IIPIDSNFNPIIKVGYHVE----EETSDVITDKLIIEVGTNGLIKSGDAIAIASKILSDH 231 Query: 228 LEAFVDL-RDVRQPEVKEEKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 L+ +D+ + + +V EK E + L P++ L+LTVRS NCLK I + +LV R Sbjct: 232 LKPLIDINKSLHDIQVLNEKNVEEKNKKLSIPIEQLDLTVRSYNCLKRHGIQTVEELVTR 291 Query: 285 TEVELLKTPNLGKKSLTEIKDVLA 308 ++ E+ NLGKKS+ EI L+ Sbjct: 292 SKSEIENIRNLGKKSVREINKKLS 315 >UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 Tax=Campylobacterales RepID=RPOA_CAMJD Length = 337 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 168/309 (54%), Gaps = 10/309 (3%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 P IE +S T AK++ P E G+G TL + LRR+L +S G A T + IDGV HE+ + Sbjct: 11 PTEFTIENISDTVAKISAWPFEIGYGITLAHPLRRLLYTSTVGYAPTAIHIDGVAHEFDS 70 Query: 71 KEGVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 G+ ED+ ++NLK L +++ ++ I+ + G + D+ +D VE+V Sbjct: 71 MRGMLEDVALFIINLKKLRFKIKSDSNKEIVEFSFKGSKEIYGKDLNND-QVEVVNKDAY 129 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 + + +E+A + + V++G GY+P+ D + I +DA ++PV Y++E Sbjct: 130 LATI-NEDAELEFTLIVEKGIGYIPSEEIKEFLNDPKFIA---LDAFFTPVREATYDIEK 185 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF---VDLRDVRQPEVKEEK 246 E D +K+V+ + T+G I P EA + A + +QL F ++R V + + + Sbjct: 186 VLFEDNPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDKITNVRSVIKNQATSNE 245 Query: 247 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 E + LL+ + DL L+ RS NCL+ + YIG+L + EL NLGKKSL EIK++ Sbjct: 246 LE-NTKLLQNITDLNLSARSYNCLEKAGVVYIGELALMSVSELAGLKNLGKKSLDEIKNI 304 Query: 307 LASRGLSLG 315 + + G +G Sbjct: 305 MENIGFPVG 313 >UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 Tax=Ureaplasma RepID=RPOA_UREPA Length = 327 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 177/333 (53%), Gaps = 36/333 (10%) Query: 7 EFLKPRLVDIEQVSS---THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +FLK +L D+ ++S V + PLE GFG TLGNALRRI LSS+PG ++ V+ G Sbjct: 3 KFLKYQL-DVPSINSEDKNRTVVKIAPLEIGFGDTLGNALRRICLSSIPGASMFAVKFGG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI----------------LTLNKSGI 107 HE+ EGV+EDI I+LNLK LA+++ DE+I + +N G Sbjct: 62 YSHEFQPYEGVKEDITHIILNLKNLAIKI---DELIYSEDYFNNLLIDKWPKMKINFKGP 118 Query: 108 GPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERP 167 G +TA DI EIV I +T + + + I + GRG V +T +++ Sbjct: 119 GVITAKDIVCPVGFEIVNQDLYIAEVT-KPIDVEIEIFAKTGRGRVDFNT---NKDFVST 174 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 + + D+ YSPV AYNVE + + + + L I++ TNGTI EAI AA I+ Sbjct: 175 LHIIATDSNYSPVLHYAYNVEMIKDSKSSMSEILTIDIATNGTISGSEAIAIAAKIMQAH 234 Query: 228 LEAFVDLRDV------RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 LE V++ + +EEK + I +DDL+LTVR+ N LK I+ +L Sbjct: 235 LEPIVNIDKTINEMIIMREREEEEKRQNASI---SIDDLDLTVRAYNALKQSGINTTAEL 291 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 ++ T+ +L K NLG+KS+TEI L R L L Sbjct: 292 IELTKSQLEKIKNLGRKSVTEIIQKLTERSLEL 324 >UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Helicobacter RepID=C5F0M8_9HELI Length = 329 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 164/301 (54%), Gaps = 19/301 (6%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 P +++ + + ++T P E G+ TL + LRR+LL S G A + I GV HE+ + Sbjct: 11 PTKIEVRETGNNKVQITAYPFENGYAITLAHPLRRLLLGSSVGFAPIALRISGVAHEFDS 70 Query: 71 KEGVQEDILEILLNLKGLAVRVQ-GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 GV ED+ + ++NLK + R++ D V + +G +T AD++++ VE+V P Sbjct: 71 VRGVVEDVSQFIVNLKAIRFRIKDNSDNVSVDYKFNGSKVITGADLSNEL-VEVVTPD-- 127 Query: 130 ICHLT--DENASISMRIKVQRGRGYVPASTRIHSEE--DERPIGRLLVDACYSPVERIAY 185 HL +E+A+++ I + +G GYVP SEE P G + +DA ++PV Y Sbjct: 128 -IHLATINEDATLAFSIIIYKGIGYVP------SEEIRASVPEGFMPLDAYFTPVTSATY 180 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV--- 242 E +E + +K++ +++T+G +DP A + A +++ +Q+ F ++ PE Sbjct: 181 TTENMLLEDDPNYEKIIFDIQTDGQVDPLTAFKNALSVMHKQMSIFNSELNIEMPETTVS 240 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 +EE+PE +L + +D L + R NCL I Y+G+LV E ++ NLGKKSL E Sbjct: 241 EEERPELK-VLSQTIDSLNFSARCFNCLDRSGIRYLGELVLLNEDQIKNIKNLGKKSLDE 299 Query: 303 I 303 I Sbjct: 300 I 300 >UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Fragment) n=3 Tax=Streptococcus RepID=Q3D5K7_STRAG Length = 212 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 132/212 (62%), Gaps = 7/212 (3%) Query: 106 GIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDE 165 G +TA DI D D+EIV P H + + E S+ + V + RGYVPA +++D+ Sbjct: 1 GPAEITAGDILTDSDIEIVNPDHYLFTIA-EGHSLKATMTVAKNRGYVPAE---GNKKDD 56 Query: 166 RPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILA 225 P+G L VD+ Y+PV+++ Y VE ARV DKL IE+ TNGTI PE+A+ +A +L Sbjct: 57 APVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIMTNGTIIPEDALGLSARVLI 116 Query: 226 EQLEAFVDLRDVRQPE--VKE-EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV 282 E L F DL +V + +KE EK + +L R +++L+L+VRS NCLK I+ + DL Sbjct: 117 EHLNLFTDLTEVAKATEVMKETEKVNDEKVLDRTIEELDLSVRSYNCLKRAGINTVXDLT 176 Query: 283 QRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 ++TE E++K NLG+KSL E+K LA GL L Sbjct: 177 EKTEPEMMKVRNLGRKSLEEVKIKLADLGLGL 208 >UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 Tax=Cyanobacteria RepID=RPOA_SYNS3 Length = 312 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 160/286 (55%), Gaps = 8/286 (2%) Query: 30 PLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLA 89 PLERG TLGN+LRR+L+ ++ G AVT V I GV HEY+T GV+ED+L+ILLN K L Sbjct: 27 PLERGQATTLGNSLRRMLMGNLAGTAVTAVRIAGVNHEYATIPGVREDVLDILLNCKQLT 86 Query: 90 VRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRG 149 V + + I L SG V A D+ V++V + I ++ E S+ + + V+RG Sbjct: 87 VTSRTDELEIGRLIVSGPAVVKAKDLQFSSQVQVVDGERPIATVS-EGHSLELEVHVERG 145 Query: 150 RGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV-EAARVEQRTDLDKLVIEMETN 208 GY P ED I L +DA + PV R+ + E A E + ++L +E+ T+ Sbjct: 146 VGYRPVD---RHNEDTSAIDLLQIDAVFMPVHRVNFTTDETAVAEGGSARERLRMEVVTD 202 Query: 209 GTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSAN 268 G++ P++AI +AA L E + + V +P ++ E I P+++L L+VR+ N Sbjct: 203 GSMTPDDAIAQAANQLIELFQPLATVTMVEEPGIEPEPSAEAQI---PLEELNLSVRAYN 259 Query: 269 CLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 CLK ++ + DL+ + +LL+ N G KS E+ + L G+S+ Sbjct: 260 CLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALERIGISI 305 >UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma penetrans RepID=RPOA_MYCPE Length = 331 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 161/310 (51%), Gaps = 22/310 (7%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + +PLERGFGHTLGN+LRR+LLS++ G ++ ++I V HE+ + +GV+ED+ +I+ Sbjct: 21 YGVFVFKPLERGFGHTLGNSLRRVLLSNIIGHSLFAIKIPNVSHEFQSIKGVKEDLTQII 80 Query: 83 LNLKGLAVRVQ----GKDEV---------ILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 LNLK L V++ G++E L ++ S G + A+DI EI+ Sbjct: 81 LNLKRLVVKIDQEIFGEEEQKETSLEKWPTLKIDFSKGGVLKASDIETPVGFEIINKDMY 140 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I + + M + V+ GRG+ S ++E I + VD+ +SPV ++ Y V Sbjct: 141 IATI-ESGVKFKMELFVKTGRGFTTFS---ENKELINAINVIAVDSNFSPVLKVGYKVSD 196 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL-----EAFVDLRDVRQPEVKE 244 + + D L +E+ TNG + EA+ +A IL E E F + D+R + Sbjct: 197 IKTTKNEINDVLELEVATNGAVSAAEAVAMSAKILLEHYKPIVTELFDNYNDLRIINEEA 256 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 L +D+LEL+VRS NCLK IH I L +T+ E+ K NLGKKS EI Sbjct: 257 TVSSSKSSLAISIDELELSVRSYNCLKRAGIHTITQLTDKTKGEIEKIRNLGKKSFKEII 316 Query: 305 DVLASRGLSL 314 + R L L Sbjct: 317 KKIQDRNLKL 326 >UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Tax=Eukaryota RepID=RPOA_GUITH Length = 318 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 164/298 (55%), Gaps = 14/298 (4%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 ++ ++PL+ G G TLGNALRR LLS + G A+T V I GV HE+ST G++ED+LEILL Sbjct: 21 SRFVIDPLKPGQGTTLGNALRRTLLSELEGLAITAVRIAGVSHEFSTINGIREDVLEILL 80 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK + Q ++ I L G VTA +++++ P+ I + N ++ M Sbjct: 81 NLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKLIDPEQYIATICGNN-TLEME 139 Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVI 203 K++ G GY +E E L VD+ + PV+++ + +E R E ++L++ Sbjct: 140 FKIEVGSGYKIVEKDNSTEHFE----FLQVDSVFMPVKKVNFRIEETRGENNILNEQLIL 195 Query: 204 EMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR-QPEVKEEKPEFDPILLRPVDDLEL 262 ++ TNG+I +EAI AA L + F L+ + + E E E I +++L+L Sbjct: 196 DIWTNGSISAKEAISNAADNL---INLFSPLKTIDGESETDYETNETSHINQILIEELQL 252 Query: 263 TVRSANCLK--AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 +VR+ NCLK IH + DL+ ++ +L++ N G+KS E+ D L R LG+ L Sbjct: 253 SVRAYNCLKRGCAHIHSVADLLDYSQEDLIEIKNFGQKSAEEVIDALQKR---LGINL 307 >UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 Tax=Eukaryota RepID=RPOA_THAPS Length = 313 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 8/291 (2%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + ++ L G G T+GN LRR+LL + G A+T V I GV E+S GV+EDILEIL Sbjct: 22 YGQFLIDSLSSGQGITIGNLLRRVLLGDLQGTAITGVRIAGVKDEFSLIPGVREDILEIL 81 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLKG+ ++ + + L G +TA+ I ++EI+ P H I ++ + + + Sbjct: 82 LNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEIINPNHYIATISSSHI-LEI 140 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 K++ G Y A+ + S++ E I DA + PV+++ + VE ++L+ Sbjct: 141 EFKIESGSKYRLAN-ELFSDKFEDFIE---TDAIFMPVQKVDFKVENVYDNSNNIKERLL 196 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE---FDPILLRPVDD 259 I++ TNG+I PE+AI + ++ ++ + + ++ E +EK DP +++ Sbjct: 197 IDIWTNGSISPEQAIFSGSNLIINLFKSIGEQKINKEKENIKEKNHIKPIDPYTHIAIEE 256 Query: 260 LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 L+L+VR NCLK I+ IGDL+ + +LL+ N G+KS E+ L ++ Sbjct: 257 LQLSVRPYNCLKRAQINTIGDLLDYSPEKLLELKNFGRKSADEVFATLKNK 307 >UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Candidatus Sulcia muelleri RepID=C7LKJ3_SULMS Length = 349 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 184/345 (53%), Gaps = 43/345 (12%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +F K + + ++++ +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV H Sbjct: 5 KFTKKENLRVLKLTNYEGHFKIEPLYPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVDH 64 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKD------------------EVILTLNKSGIG 108 E++T +GV+ED+ EILLNLK + + + + +I+ K Sbjct: 65 EFATIKGVKEDMTEILLNLKKIRFKKKMEMEEEEEEEEEEEEEEGEKFNIIIKNEKE--- 121 Query: 109 PVTAADI-THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERP 167 +TA D+ + EI+ P +I + + +++ I +++G GYVP SEE+E+ Sbjct: 122 EITAGDLGEYIHLFEIINPDLIILN-KKKFIYLNITIVIKKGIGYVP------SEENEKH 174 Query: 168 I---GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATIL 224 I G + +D+ ++P++++ Y +E V + + ++L E++T+GTI+P++A+ +A+ ++ Sbjct: 175 INTNGTISMDSIFTPIKKVKYTIENCSVSKNSTYERLFFEIKTDGTINPKDALIKASNLV 234 Query: 225 AEQLEAFVDLR--------DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH 276 L+ + + ++ + E + IL ++ L+VR+ NCLK I Sbjct: 235 IRHLKLLSNKKISLNYNKKYKKKKQTNENYLKLRNILNSSLERKNLSVRTLNCLKKAKIF 294 Query: 277 YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 GDL++ LGKKSL E+ ++ + GM LE++ Sbjct: 295 TWGDLIKSNPTNF---KYLGKKSLEELDLIMKKLTIYYGMNLEDY 336 >UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Tax=Mycoplasma RepID=RPOA_MYCGE Length = 328 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 157/301 (52%), Gaps = 20/301 (6%) Query: 30 PLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLA 89 PLE GFG T+GNA+RR+LLS +PG +V + I GV E+S EGV ED+ E++LN K L Sbjct: 30 PLESGFGITIGNAMRRVLLSCIPGASVFAIAISGVKQEFSNVEGVLEDVTEMVLNFKQLV 89 Query: 90 VRVQG----KDEVI---------LTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDE 136 VR+ E+I L + G V A D+ E++ + L + Sbjct: 90 VRISDLLFEDGEMIEPPLERWPVLKVTAEKKGAVYAKDLECPAGFEVINKDLYLFSL-QK 148 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRT 196 + +++ + V++GRG+ ++ + + E +G + DA +SPV Y V+ + ++ Sbjct: 149 DMKLTVSVYVKQGRGF---TSFLENRELINSLGIIATDANFSPVLHCGYEVQEVKTSKQK 205 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD-VRQPEVKEEKPEFDPI--L 253 D L ++ TNG I +A AA IL E L V + + ++ + +EK E + Sbjct: 206 LTDHLTFKIATNGAIKAVDAFAMAAKILIEHLNPIVSVNESIKNLTIIQEKAEERKVKSF 265 Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 + +++L+ TVR+ NCLK IH + +L+ ++ ++ + NLGKKS EI + GL Sbjct: 266 AKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLTDIREIRNLGKKSEREIIKKVQELGLK 325 Query: 314 L 314 Sbjct: 326 F 326 >UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 Tax=Epsilonproteobacteria RepID=RPOA_HELPJ Length = 344 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 172/322 (53%), Gaps = 20/322 (6%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L P + + + K++L P E G+ TL + +RR+LL S G A ++I+GV HE+ Sbjct: 9 LIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEGVHHEF 68 Query: 69 STKEGVQEDILEILLNLKG---LAVRVQGKDEVI----LTLNKSGIGPVT--AADITHDG 119 + GV ED+ ++NLK +A + G+D + + ++ S GP+ A D+ D Sbjct: 69 DSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGPMELRARDLNSD- 127 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPA-STRIHSEEDERPIGRLLVDACYS 178 +EIV P+ + + +E+A ++ + + +G GYVP+ +TR + P G + +D ++ Sbjct: 128 HIEIVNPEMPLATI-NEDAQLNFSLIIYKGMGYVPSENTR-----ELMPEGYMPLDGSFT 181 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 P++ + Y +E VE + +K++ ++ET+G IDP +A A ++++QL F + R + Sbjct: 182 PIKNVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGE-RPIA 240 Query: 239 QPEVKEEKPEFDPI--LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 E + + D L ++ + L+ R NCL I Y+G+LV +E EL N+G Sbjct: 241 NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMG 300 Query: 297 KKSLTEIKDVLASRGLSLGMRL 318 KKS EI + L G +G L Sbjct: 301 KKSYDEIAEKLNDLGYPVGTEL 322 >UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidioschyzon merolae RepID=RPOA_CYAME Length = 316 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 17/300 (5%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 I +AK L+PL T+GN+LRR+LLS + ++T V I G HE +T +GV+ Sbjct: 19 INHARDIYAKFILQPLSYTQALTMGNSLRRVLLSELESISITAVRIAGASHELATLKGVR 78 Query: 76 EDILEILLNLKGLAVRVQGKDEVILT-LNKSGIGPVTAADITHDGD--VEIVKPQHVICH 132 ED+L+I+LNLK + R Q K + +T L G VTAA + + I+ I Sbjct: 79 EDVLQIMLNLKQIVWRGQLKKQPTITRLKVQGPAIVTAAAFQSEANSSANIIDTCQYIAT 138 Query: 133 LTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARV 192 + D + M ++++ GY A + I L +D + PV+R+ + V+ A V Sbjct: 139 I-DTQDILEMECQLEQSSGYRLA-------KPSEMIDWLPIDGVFMPVKRVNFWVDKALV 190 Query: 193 EQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEK--PEFD 250 ++ L +E+ TNG+I P+EA+ +AA IL L + + K E+ + Sbjct: 191 DKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTL-EWKTSHTKNEQTMAQLS 249 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 +L +++L+L+VR+ NCLK IH + DL+Q T+ ELL N G+KS+ E+ L + Sbjct: 250 NML---IEELDLSVRAYNCLKRAQIHSVADLMQYTQEELLALKNFGQKSVEEVNKALEQK 306 >UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BED9_9CHLO Length = 356 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 33/331 (9%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE+ + + + L P E G G TL N+LRR LLS + G A+ +EI+G LHEYS GVQ Sbjct: 19 IEENKNFYGRFILGPFEVGQGLTLANSLRRTLLSEISGLAIVAMEIEGALHEYSNLPGVQ 78 Query: 76 EDILEILLNLKGLAV--RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 E IL+ILLNLK + + R + V L G G VTA+D+ ++ V P I L Sbjct: 79 ESILDILLNLKQIVLVSRFEMDQPVFGFLKVQGPGIVTASDLKLPSSIQCVDPHQYIATL 138 Query: 134 TDENASISMRIKVQRGRGYV-------------------PASTRIHSEEDERPIGR---- 170 + N +S++ V + + Y+ S + ++ I + Sbjct: 139 S-YNGFLSIKFFVCQKKNYIFLKNASLKKKKIYKLKKNKIQSPILEKKKSNFLINKTSNV 197 Query: 171 LLVDACYSPVERIAYNVEAARVE-QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +D + V ++ Y +E + +++ +E+ TNG++ P +AI AA + Sbjct: 198 VSIDPNFFSVNKVNYLIETCSLFLFEKPKEQIFLEIWTNGSLHPRQAINEAAKRIVNIFS 257 Query: 230 AFVDLRDVRQPEVKEEK------PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQ 283 F + R + +K K F + +L+L++RS CLK IH I +L+Q Sbjct: 258 PFQETRFYKPGRLKSSKLFSLKRENFKKFTSLDIANLDLSLRSYTCLKRANIHTIDNLLQ 317 Query: 284 RTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + ELL N G +SL E+ ++L GL+L Sbjct: 318 YSSEELLLLKNFGTRSLEEVLNILQQIGLNL 348 >UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium globosum RepID=RPOA_CHAGL Length = 334 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 167/326 (51%), Gaps = 49/326 (15%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE+ + + + + PL +G +T+G ALRR LLS + G +T V+I +HEYS+ GVQ Sbjct: 22 IEKSTLHYGRFIISPLWKGQANTIGLALRRTLLSEVEGTCITSVKIKNAIHEYSSLSGVQ 81 Query: 76 EDILEILLNLKG--LAVRVQGKDEVILTLNKSGIGP--VTAADITHDGDVEIVKPQHVIC 131 E + +IL+NLK L+ G E L++ +GP V A+D+ ++IV P I Sbjct: 82 ESVHDILINLKKIILSSSFSGIFEGFLSV----VGPKTVLASDLNLPSFIKIVNPDQYIA 137 Query: 132 HLTDENASISMRIKVQRGRGYV---PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 + ++ + +++I +Q+G+GY P S + G LVD + P+ + Y++ Sbjct: 138 TV-NKPINFNLQIYIQKGKGYSLKNPISIK---------QGFFLVDPVFIPIRSVNYSIH 187 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV--DLRDVRQPEVKEEK 246 + E+ T + L++E+ TNG+I+P+EAI+ A+ L V + + ++ KE++ Sbjct: 188 SFEDEKATK-EFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQLKNQLFKEDE 246 Query: 247 PE----------------------FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 ++ I L D LEL+ R+ N LK I+ I DL++ Sbjct: 247 KNKELNFIETNSNAISDNENSYNLYNQIFL---DQLELSSRAYNSLKKNNINTISDLLKY 303 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASR 310 + +LLK N GKKS ++ + L R Sbjct: 304 SYEDLLKIKNFGKKSADQVIEQLKKR 329 >UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=Pelagophyceae RepID=C6KIM3_9STRA Length = 305 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 164/289 (56%), Gaps = 12/289 (4%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 ++ L+ L +G G T+GN LRR+LL+ + G A+T V I+G+ +E++T GV+ED+LEILL Sbjct: 21 SRFLLKELTQGQGLTIGNTLRRVLLTELEGTAITAVRINGINNEFATIPGVREDVLEILL 80 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK + + ++ G VTAA+I+ + ++ H I + E + + Sbjct: 81 NLKQIKFTGLVTEPFFTHVSVQGPQLVTAANISLPDGLSLLNSNHYIAAVA-EQTNFEIE 139 Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLL-VDACYSPVERIAYNV-EAARVEQRTDLDKL 201 +K++ G GY EE+ G L +D+ ++PV+ + Y + ++ +++++ + L Sbjct: 140 LKIESGTGY-----NFTDEENRICSGDFLSLDSIFTPVKNVNYQIKDSYKIDEKIT-EIL 193 Query: 202 VIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLE 261 +E+ TNG+I P +A+ +AA +L + V + +++ V E+ E + +L +++L+ Sbjct: 194 DLEIITNGSITPNDALNKAALVLQTLFGSLV-IDELQTNPVLPEQTETELDIL--IEELQ 250 Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 L+VR+ NCLK I I DLVQ + EL N G+KS E+ + L R Sbjct: 251 LSVRAYNCLKRVNIKTIADLVQYSVKELKDIKNFGQKSANEVVEKLQDR 299 >UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCH7 Length = 332 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 162/317 (51%), Gaps = 34/317 (10%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +EQV+ ++PLERG G+TLGNALRR +LSS+P CAV V+I+G+ HE++ + V Sbjct: 14 VEQVNEFETSFEIKPLERGLGNTLGNALRRTVLSSIPSCAVFGVKIEGIKHEFTVLDDVI 73 Query: 76 EDILEILLNLKGL------AVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 ED++ IL NLK + +V Q V L + G + A DI ++IV P Sbjct: 74 EDVVTILNNLKRVRFFYNPSVFSQNSIHVASFLGQKA-GQIYARDIESHSGLKIVNPDLY 132 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTR-------IHSEEDERPIGRLLVDACYSPVER 182 I ++ A + + + G+G+V T I E + L VD+ +SPV Sbjct: 133 IADVSKVGA-LKFELFITNGKGFVDFETNKKYVNEVISRLESQIEGSVLAVDSDFSPV-- 189 Query: 183 IAYNVEAARVEQRTDL--DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ- 239 + N +A + + + +KL ++T+G+I ++A+ + A IL L D+ ++ + Sbjct: 190 LNANYQAVEINSASPIIEEKLNFSIKTDGSIFAKDALSQGAKILIAHLNLLADVENLNKF 249 Query: 240 -------PEVKEEKPEFDPI--LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 E+KEE PI +D L+L+VRS N L+ + I D+ + ++ + Sbjct: 250 SADFFGDQEIKEE-----PIRRFSNSIDALDLSVRSLNALRRAQYYKISDIEKLSQDDFE 304 Query: 291 KTPNLGKKSLTEIKDVL 307 NLG+KS+ EI + L Sbjct: 305 NIKNLGRKSVQEIMEKL 321 >UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris RepID=RPOA_CHAVU Length = 358 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 50/318 (15%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + + PL++G +TLG LRR LLS + G +T V+ID + HEY T GV+E I +IL Sbjct: 26 YGRFAIAPLKKGQANTLGITLRRTLLSDLDGICITSVKIDNIKHEYCTLTGVRESIQDIL 85 Query: 83 LNLKGLAVR-VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASIS 141 LNLK + + V K + K G +TA+DI + +EI+ +I HLT E Sbjct: 86 LNLKEIVFKGVCDKTQKGFIFVK-GPKKITASDIQIEPCIEILDSNQIIAHLT-EPIDFK 143 Query: 142 MRIKVQRGRGY-VPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 + + +++ G+ + +T+I + +DA + P+ + Y++ VE+ D Sbjct: 144 VELTIEKSMGFRLQNATQISKDS-------FSIDAIFMPIRNVNYSIHP--VEKAGDWKS 194 Query: 201 --LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK-------EEKPEFDP 251 L++E+ TNG+I P+EA +A+ + + F+ L + +++ EEK EF Sbjct: 195 ELLILEIWTNGSITPKEAFHQASEKI---MNIFLSLSNSSDNQIQEKSTKNFEEKEEF-- 249 Query: 252 ILLRPVD----------------------DLELTVRSANCLKAEAIHYIGDLVQRTEVEL 289 + + +D LEL+ R+ NCLK E I + DL+ ++ +L Sbjct: 250 -IFQNIDGFKQDKETKVQESLGWKKISINQLELSARAYNCLKNEKISTLFDLLNYSQEDL 308 Query: 290 LKTPNLGKKSLTEIKDVL 307 LK N GK+S ++ + L Sbjct: 309 LKIKNFGKRSFEQVVNAL 326 >UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ostreococcus tauri RepID=RPOA_OSTTA Length = 356 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 106/349 (30%), Positives = 172/349 (49%), Gaps = 66/349 (18%) Query: 19 VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDI 78 ++ + +++ P+ G G T+GN LRRILL+ +PG V EI+GV E+ST G++E + Sbjct: 18 LTDCYGRLSFGPVNPGQGLTIGNTLRRILLNDLPGIGVIGAEINGVQSEFSTLPGIRESV 77 Query: 79 LEILLNLKGL--------AVRV-QGKDEVILTLN---KSGIGP--VTAADITHDGDVEIV 124 +EI LNL+ L A +V Q K V LN K P VTA D+ H + E V Sbjct: 78 IEIFLNLRELIFTPTATCAQKVKQTKPFVYAKLNSELKIDNFPYVVTAKDL-HIPEYEFV 136 Query: 125 KPQHVICHLTDENASISMRIK--VQRGRGY--------VPA-----------STRIHSEE 163 P I + A+ + ++ + +GRGY VP ST+ +S+ Sbjct: 137 DPNQQIATILSPTAAENFKLTLLIGQGRGYQSWKKLPGVPQLMDQRFFEQFDSTQTNSKS 196 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 PI DA + P+ ++ + V+ E D + + E+ TNG+I+P +A++ AA + Sbjct: 197 VTFPI-----DAIFMPIRQVNFTVQ----EHSVDGEYIYFEVWTNGSINPFDAVKSAAKV 247 Query: 224 LAEQLEAF--------VDLRDVRQPEV----------KEEKPEFDPILLRPVDDLELTVR 265 + + A V L + + PE E + FD I ++ LEL++R Sbjct: 248 GMKLMTACLTTLQDQQVYLDESKLPETPNFVQVNYNKMESESNFDQIF---IEQLELSLR 304 Query: 266 SANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + NCLK I + DL Q++ +L+K N G+KS E++ L++ G+ L Sbjct: 305 AYNCLKRANILTLADLSQQSFRDLMKLRNFGQKSADEVRAALSTYGIEL 353 >UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Tax=Embryophyta RepID=RPOA_ADICA Length = 345 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 163/319 (51%), Gaps = 35/319 (10%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE + + + P +RG T+G A+RR LL + G ++T GV+HEYST G+Q Sbjct: 22 IESKRLHYGRFLVSPFKRGQASTVGIAMRRALLQEIEGTSITCARFCGVVHEYSTITGLQ 81 Query: 76 EDILEILLNLKGLAVRVQGKDEVI-LTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 E I ++L+NLK + +R K+++ L+ +G VTA D++ VE + I +T Sbjct: 82 ETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQYIATIT 141 Query: 135 DENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE---AAR 191 + S+++ +++++ GY RI + G+ +DA + PV + Y++ + R Sbjct: 142 -QPISLTIELEIEKDCGY-----RIENLAKSGK-GQFPIDAVFMPVRNVNYSIHLFGSGR 194 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--DVRQPEVKEE---- 245 Q L IE+ TNG++ P EA+R+A+ L + L F+ +R DV E E+ Sbjct: 195 ATQEI----LFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDSLDL 250 Query: 246 ------KPEFDP--------ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 +P+F + R +D LEL R+ NCLK I+ I DL+ + +L K Sbjct: 251 TKSPSLQPQFGDTNNLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSREDLSK 310 Query: 292 TPNLGKKSLTEIKDVLASR 310 N G+KS+ ++ + L R Sbjct: 311 LKNFGRKSVDQVSEALWDR 329 >UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula RepID=RPOA_HUPLU Length = 336 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 86/318 (27%), Positives = 161/318 (50%), Gaps = 34/318 (10%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 +++ L PL+ G +T+G +RR LL + G +T + + + HEYST +G+QE + +IL Sbjct: 32 YSRFILSPLKVGQANTIGLVMRRALLGEIKGTCITCAKFENITHEYSTMDGIQESVHDIL 91 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 +N K + ++ + + ++ G VTA DI VE++ P I +T + +++ Sbjct: 92 INSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQHIATIT-KKVKLNI 150 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 +K+++ GY + E G VDA ++P+ + Y++ ++ + +++ Sbjct: 151 ELKIEKDSGYRRQNIV------EYKDGNFTVDAVFTPIRSVNYSIHCFESHDKSIMKEML 204 Query: 203 I-EMETNGTIDPEEAI----RRAATILAEQLEAFVDLRDVRQPEVKE------------- 244 + E+ +NG+I PEEAI R + + L+A + D + ++ E Sbjct: 205 LYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGEDIHESNALHPSVSIVVD 264 Query: 245 ---EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 +K F I ++ LEL+ ++ N LK +H I DL+ ++ +L+K N GKKS+ Sbjct: 265 QMAKKVTFQHIF---IEQLELSPKAYNFLKKINVHTISDLLDYSQDDLMKMKNFGKKSVE 321 Query: 302 EIKDVLASRGLSLGMRLE 319 +I + L R GMRL+ Sbjct: 322 QILEALQKR---FGMRLQ 336 >UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2 Tax=Physcomitrella patens RepID=RPOA_PHYPA Length = 450 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 152/304 (50%), Gaps = 23/304 (7%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + + P G +T+G ++++ LL + G AV+ V EY+ +GV+E ++IL Sbjct: 141 YGRFAVSPFRSGQANTVGVSMQKALLGEVEGAAVSCATFKNVKSEYAAMKGVEETPMDIL 200 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 +NLK L +R + ++ G GPVTA DI +E+ P I +LT E S+ + Sbjct: 201 VNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQHIAYLTKE-VSLDI 259 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + V++G GY H++ + GR +D+ + PV Y+V + E + L Sbjct: 260 ELDVEKGCGYRMGD---HTKSGD---GRFYIDSVFMPVRNANYSVHSYESEPDVTQEILF 313 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFV--DLRDVRQPEVKEEK----PEFDP----- 251 +E+ TNG+I PEEA+ AA L + F+ ++V K K +F+ Sbjct: 314 LEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHKSFTMSQFNSSAEMS 373 Query: 252 ---ILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 + LR VD L + ++ N LK I+ + DL+ T+ +LL PN G+KS+ +I + Sbjct: 374 AKEVDLRHVYVDQLRIPSKAYNSLKRANINTVSDLLDYTQDDLLSIPNFGRKSVDDILEA 433 Query: 307 LASR 310 L ++ Sbjct: 434 LQAQ 437 >UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalpha subunit) (Transcriptase alpha chain) (RNApolymerase alpha subunit) n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IYV9_MYCAP Length = 336 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 160/309 (51%), Gaps = 21/309 (6%) Query: 26 VTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNL 85 +L+PLERGF +T+ ALRR+LLS++ A+ ++I GV HE+ T G+ ED+ I++NL Sbjct: 26 FSLKPLERGFANTVAVALRRVLLSNITSLALFAIKISGVSHEFQTIPGIVEDVTAIIMNL 85 Query: 86 KGLAVR-----VQGKDEVILTLNKSGIGPVTAADI-THDGDVEIVKPQHVICHLTDENAS 139 + + + V+ + + T+ G VT+ I + VEI+ I ++ + + Sbjct: 86 RKVKFKYNPEFVKDGEIIKATIKAEQPGVVTSKSIEISNPSVEIINKSQEIANI--QKGA 143 Query: 140 ISMRIKVQRGRGYVPASTR--------IHSEEDERPIGRLL---VDACYSPVERIAYNVE 188 + + + ++ GRG++ + + + + E I + L VD+ +SPVE+ +Y V+ Sbjct: 144 LVIELFLRPGRGFISNESNKKFIQNDSLFASKIESNIKKGLFIAVDSNFSPVEKCSYTVK 203 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 ++L+ ++T+GT+D + AI +A IL D+ ++ +EEK Sbjct: 204 ELNTSSNKIEEELLFTIKTDGTVDAKSAINQACKILVAHFMTVGDVDAMKIDVFEEEKIN 263 Query: 249 FDPILLRPVD--DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 D + VD L L+VRS N LK ++ T EL +T NLG+KSL EI++ Sbjct: 264 NDEPIENDVDINQLGLSVRSLNALKRIGKTKASEVAAMTWEELEQTKNLGRKSLDEIQEC 323 Query: 307 LASRGLSLG 315 L G +L Sbjct: 324 LKLNGFTLN 332 >UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Tax=Gammaproteobacteria RepID=A3Y4L0_9VIBR Length = 82 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/62 (93%), Positives = 62/62 (100%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQ+++THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQINTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 ID 62 I+ Sbjct: 61 IE 62 >UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFY9_MYCFE Length = 339 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 165/332 (49%), Gaps = 23/332 (6%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +T+ ++ + +S TL+PLERG G TLG ALRRILLS++ A+ ++I+ V Sbjct: 6 MTKLEYQKVTKLNNSTSNVTAFTLQPLERGMGQTLGVALRRILLSNITSLALFAIKIEDV 65 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQ----GKDEVI-LTLNKSGIGPVTAADI-THD 118 HE+ +G ED+ I++NL+ + + DE+I +TL G VT+ + ++ Sbjct: 66 NHEFQVVDGCVEDVATIIMNLRKVKFQYNPEFVKDDEIIKVTLKADQPGEVTSRLLEVNN 125 Query: 119 GDVEIVKPQHVICHLT-DENASISMRIKVQRGRGYVPA------------STRIHSEEDE 165 +EI+ I HL+ + +++ + ++ GRG++ +TR+ S+ Sbjct: 126 SSIEILNKSLEIAHLSANGKHKLNIELYLRPGRGFISNEENKKLLNNSSITTRMESKIKN 185 Query: 166 RPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILA 225 + D+ +SP+E++ Y VE ++L +T+GT+DP+ A+++A IL Sbjct: 186 GIF--IATDSNFSPIEKVNYTVEELNSSSNKIEERLTFSFQTDGTVDPKSALQQACEILV 243 Query: 226 EQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVD--DLELTVRSANCLKAEAIHYIGDLVQ 283 + ++ +++ EE + VD L L+VRS N LK I + + Sbjct: 244 GHFKLIGNVDEMKVNVFAEESEQTQETNDNDVDINSLNLSVRSLNALKRIGKTKISQVAE 303 Query: 284 RTEVELLKTPNLGKKSLTEIKDVLASRGLSLG 315 + EL + NLG+KSL EI+ L G L Sbjct: 304 MSLEELEQVKNLGRKSLDEIQQRLKEYGYELS 335 >UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima RepID=RPOA_SPIMX Length = 344 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 102/326 (31%), Positives = 162/326 (49%), Gaps = 57/326 (17%) Query: 30 PLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLA 89 PL G TLG A+RR LL S+ G A+ +I G HEYST EG+QE I +ILLNLK + Sbjct: 38 PLLAGQATTLGVAIRRTLLESIQGTAIVAAKIYGAAHEYSTLEGIQESIHDILLNLKQVI 97 Query: 90 VRVQGKDEVILTLNK---SGIGP--VTAADITHDGDVEIVKPQHVICHLTDENASISMRI 144 ++ + I K S IGP VTAADI ++ I P H I +T + + + Sbjct: 98 IKNK-----ICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIATIT-KPIRFQVEL 151 Query: 145 KVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIE 204 + +GRGY+ I D + G VDA ++PV + +++ +Q + L++E Sbjct: 152 IINKGRGYL-----IQDGNDVQD-GYFPVDALFNPVRNVNFSIHNLAEQQ----EALILE 201 Query: 205 METNGTIDPEEAIRRAA-------------------TILAEQ---------LEAFVDLRD 236 + TNG I P +A+R+ + T L Q L+ +L Sbjct: 202 IWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTYMTSLGSQDYNIHIKNSLKEKFELHS 261 Query: 237 VRQPE----VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + + E +K++ E+ P++ LEL+ R CLK I+ I DL++ ++ +LLK Sbjct: 262 IERIEDSHLIKDQFLEYSK---TPIELLELSTRPFKCLKNANIYTINDLLKLSQQDLLKI 318 Query: 293 PNLGKKSLTEIKDVLASR-GLSLGMR 317 N+G S+ +I + L R G++L ++ Sbjct: 319 SNMGPSSVKQIVEALDKRFGINLKLK 344 >UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=Streptococcus criceti RepID=A7DUN8_STRCG Length = 168 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 5/164 (3%) Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LN+KGLAV+ +DE + L+ G VTA D+ D D+EI+ P H + + E S+ Sbjct: 1 LNVKGLAVKSYVEDEKTIELDVQGPAEVTAGDVLTDSDIEIINPDHYLFTIA-EGHSLKA 59 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + V + RGYVPA ++ D P+G L VD+ Y+PV+++ Y VE ARV DKL Sbjct: 60 TMTVAKNRGYVPAE---GNKSDSAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLT 116 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-RQPEVKEE 245 IE+ TNGTI PE+A+ +A +L E L F DL ++ + EV +E Sbjct: 117 IEIMTNGTIIPEDALGLSARVLIEHLNLFTDLTEIAKTTEVMKE 160 >UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z691_SULMW Length = 239 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 130/214 (60%), Gaps = 16/214 (7%) Query: 28 LEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNL-- 85 +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV HE+ST +GV ED+ EI+LNL Sbjct: 26 IEPLFPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVNHEFSTIKGVIEDMTEIILNLKK 85 Query: 86 ---KGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDGDVEIVKPQHVICHLTDENASIS 141 K + + EV + + +TA D+ + +I+ P +I + + S+ Sbjct: 86 VRFKKNKKKENFESEVFNMIISNDKEEITAGDLGKYINKFDILNPDLIILN-KQKLISLD 144 Query: 142 MRIKVQRGRGYVPASTRIHSEEDERPI---GRLLVDACYSPVERIAYNVEAARVEQRTDL 198 + I +++G GYVP SEE++ + G + +D+ ++P++ + Y ++ + + ++ Sbjct: 145 ISIVIKKGIGYVP------SEENKENLIGSGSIPMDSIFTPIKNVKYKIDNCSINKNSNY 198 Query: 199 DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + L++E++T+G+I+P +A+ A+ IL + L+ F+ Sbjct: 199 ESLLLEIKTDGSINPRDALTNASNILIQHLKMFI 232 >UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y960_COPPD Length = 319 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 140/289 (48%), Gaps = 9/289 (3%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 AK+++ L G G TLGNALRR+LL + G V ++G+ HE+ EGV ED L I L Sbjct: 25 AKLSVLNLPEGEGITLGNALRRVLLGQIGGTGVLGFRLEGLDHEFMVPEGVVEDGLTIGL 84 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK + + G +L + G + AADI D DVE+ I ++ + I M Sbjct: 85 NLKKVLFKYYGDGVKVLYIKAKGPAEIKAADIVPDADVEVFNLDQTILTVSTDR-EIYME 143 Query: 144 IKVQRGRGY--VPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKL 201 I + G GY V + +++ + P + +D +SPV R Y+V A V++ + L Sbjct: 144 IYLTNGVGYRTVEDNKKLY----QFPFRTIYLDTSFSPVRRAEYHVTPAIVDEPGTFESL 199 Query: 202 VIEMETNGTIDPEEAIRRAATILAEQLE-AFVDLRDVRQPEVKEEKPEFDPILLRPVDDL 260 + + TN +DP E IR+AA L+E+ V EE+ D L V+ L Sbjct: 200 ELIVYTNLAVDPVEVIRQAANFLSEEFRKVAEAKEAAAGEVVVEEQAISDEKLDASVEML 259 Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 L+ L+ I+ I DLV E P +G L EI++ LA+ Sbjct: 260 NLSRAVLTHLEKANINTIRDLVDVLEHN-ESIPGIGAVRLEEIRNKLAA 307 >UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma pulmonis RepID=RPOA_MYCPU Length = 333 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 166/335 (49%), Gaps = 40/335 (11%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +K + V ++V+ +EPLERGFG T+G ALRR LLSS+ ++I V E+ Sbjct: 7 IKYKEVKTKRVNDYETTFKIEPLERGFGSTIGTALRRTLLSSITSVVPFAIKIKDVDQEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIG-------PVTAADITH--DG 119 T + ED+ I+LN+K + + DE I NK G +T++D+ + Sbjct: 67 DTISDIVEDVQMIMLNVKNIHLVY---DENIFEDNKIYRGVIETKNEKITSSDLKFPENP 123 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI----------- 168 ++EIV I + + M + GRGY+ S ED + + Sbjct: 124 EIEIVNKDLEIATNNGQKPFV-MEVYFHVGRGYI-------SFEDNKKLIEEKVALLNST 175 Query: 169 ---GRLL-VDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATIL 224 G+ L +D+ +SPVE++ V+ ++L IE++T GTID + + +AA IL Sbjct: 176 IKRGKFLAIDSDFSPVEKVKVKVQEINSSSLNIEEELEIEIKTKGTIDTKNILSQAAQIL 235 Query: 225 AEQLEAFVDLRDVRQPEVKEEKPE--FDPILLRPVD--DLELTVRSANCLKAEAIHYIGD 280 L+ D++++ +V E+K + +P + VD L+L+VRS N LK + + D Sbjct: 236 IAHLQVIGDVKNLDAVDVFEQKKQEKVEP-SIHSVDITSLDLSVRSINALKRQGYTKLAD 294 Query: 281 LVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLG 315 ++ TE +L+ NLGKKS+ EI L ++L Sbjct: 295 ILTLTEDDLVAVKNLGKKSVEEIIQKLKEYNVTLN 329 >UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragment) n=5 Tax=Leuconostocaceae RepID=A6Q046_LEULA Length = 190 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 2/163 (1%) Query: 75 QEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 +ED+ +I+LNLK + + + DE L ++ G VTAAD+ DVE++ P I + Sbjct: 6 REDVTQIILNLKKVVLAIDSDDERSLEIDVQGPAEVTAADLQAGADVEVLNPDLHIATVA 65 Query: 135 DENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQ 194 S+ M + +GRGY A E E PIG L VD+ Y+P+ER+ Y+VE RV Sbjct: 66 -AGKSLHMTVTAVKGRGYSSADENKQLRE-EMPIGVLAVDSIYTPIERVNYHVENTRVGA 123 Query: 195 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 R D DKL ++ TNG+I P +A+ A ILAE L F+D+ V Sbjct: 124 RDDYDKLTFDIWTNGSIKPSDALSLGAKILAEHLNLFMDISPV 166 >UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Carsonella ruddii PV RepID=RPOA_CARRP Length = 322 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/316 (24%), Positives = 156/316 (49%), Gaps = 19/316 (6%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 + I+ +S + + +E F +LGN ++R++ + + ++I + E+ G Sbjct: 13 ISIKNISFFRSIIRIETFNNSFCDSLGNFIKRVIFLTTNSYKIIYLKIYKIKSEFYDLPG 72 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 + E+ IL NL + +++ + L + K G +TA DI D ++ I P +I Sbjct: 73 IIENTQTILKNLDNIIIKINNDNVANLIIKKKGPCIITAKDIFSDKNITIFNPNKII--- 129 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEED-ERPIGR---LLVDACYSPVERIAYNVEA 189 A++S I V + + +++E + I + + ++ SP+ I+ N Sbjct: 130 ----ANVSNNIVFYCIMKCVNSLFKNYTDEFFQFKIFKENIIFLNNFKSPI--ISLNYYI 183 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE---AFVDLRDVRQPEVKEEK 246 + L KL ++ETNG+I P + + + + + +F+ + ++ V+++ Sbjct: 184 NKKIFNKKLKKLFFDIETNGSIKPVDCFKNCIFYIKKYFDLIFSFIGFKKYKKINVEKKN 243 Query: 247 P---EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + + L +++L+L++RS NCLK I IGDL++ ++ L+ PNLGKKS EI Sbjct: 244 NLNLKINSVYLNSINNLKLSIRSLNCLKNNNIFLIGDLIKISKNNLINIPNLGKKSYNEI 303 Query: 304 KDVLASRGLSLGMRLE 319 + L + GL+L ++E Sbjct: 304 LNSLKNFGLNLNSKIE 319 >UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Tax=Heterosigma akashiwo RepID=B2XTD4_HETA2 Length = 402 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 19/223 (8%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 D + + + K + L G G T+G+ALRR+LL+ +PG A+ + I + E+S+ GV Sbjct: 10 DQNEYNEQYGKFLINSLHPGQGTTVGSALRRVLLTDLPGLAIVGLRIANINTEFSSLPGV 69 Query: 75 QEDILEILLNLKGLAVRVQ---GKDEVILTLNKSGIGPVTAA--DITHDGDVEIVKPQHV 129 +EDILEI+LN+K + + + K V+ L G G VTAA + D +++I+ P Sbjct: 70 REDILEIILNVKDIVIEGEFNSSKPWVLGRLKLKGPGVVTAALIEFEEDANIQIINPSQY 129 Query: 130 ICHLTDENASISMRIKVQRGRGY--VPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 I + + N+SI M VQ G+ Y V + I D L +DA + PV ++A+ V Sbjct: 130 IATI-EVNSSIEMEFLVQTGKNYRLVESENSITYSTD-----FLQIDAIFMPVTKVAFEV 183 Query: 188 EAAR---VEQRT---DLDKLVIEMETNGTIDPEEAIRRAATIL 224 + + +E + D + L +E+ TNG+I P +A+ +A+IL Sbjct: 184 TSTKTNALENNSSIQDNENLTLEIWTNGSISPIKALVFSASIL 226 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 P+++L L+VR+ N LK IH + DLVQ + +L N GKKSL E+ Sbjct: 342 PIEELILSVRAYNGLKRANIHSVSDLVQYSIKDLKDIKNFGKKSLDEV 389 >UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=Bryophyta RepID=A9CP51_PHYPA Length = 525 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 148/306 (48%), Gaps = 29/306 (9%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--GVLHEYSTKEGVQEDILE 80 +A+ + P +G T+GNALRR LL + G A+T G++HEY +G+QE + + Sbjct: 215 YARFAVSPFRQGQAITVGNALRRALLGEVQGAAITCATFKDMGIVHEYQAVDGIQETVQD 274 Query: 81 ILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 ILLN++ +A+ + ++ G V A DI + + P I +T Sbjct: 275 ILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIALVT-AAIPF 333 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 ++ I+V++ GY RI + + GR +D+ + PV + Y+V + VE T + Sbjct: 334 NVEIEVEKDVGY-----RI-VDPGKSTNGRFYIDSVFMPVVQANYSVHSFEVEDVTR-EI 386 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRP---- 256 L +E+ TNG+I PEEA+ AA L + L ++ + E++ I + Sbjct: 387 LFLEIYTNGSISPEEALIEAARSLIDLLLPLLESEVIEVTNTTEKENGSRNISMLSSFLS 446 Query: 257 ---------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 +D L+L R+ NCLK IH + DL+ T+ +L++ N GKKS+ Sbjct: 447 SSDQITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNFGKKSVE 506 Query: 302 EIKDVL 307 E+ + L Sbjct: 507 EVLEAL 512 >UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma mobile RepID=RPOA_MYCMO Length = 333 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 38/314 (12%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 ++++ ++PLE+G TLG A+RR+LLSS+ A V+I GV HE+ V E Sbjct: 15 KRINDFSTSFIVQPLEKGLATTLGTAIRRVLLSSISSVAPFAVKIKGVEHEFMAINKVTE 74 Query: 77 DILEILLNLKGLAVRVQ------GK-DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 D+ +ILL L+ + + GK ++ L NK G + A D EIV P + Sbjct: 75 DVPQILLRLRDIKIAYNPEIFEDGKIYKLSLKSNKEA-GDIYAKDFILPIGAEIVNPGLL 133 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI-------------GRLL-VDA 175 I N + + + V+ GRGYV EE+++ I G+ + VD+ Sbjct: 134 IATTAAANV-LEIDVFVRAGRGYVDF------EENKKYIDEIKTNLTSSISNGQYIAVDS 186 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 +SP+E+++++ +KL +E+ T GTID + AI +AA IL L D+ Sbjct: 187 NFSPIEKVSFSSSELNTSSVIVQEKLEMEIVTKGTIDAKNAIAQAAKILVAHLNIIGDVN 246 Query: 236 DVRQPEVKE------EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVEL 289 + ++ E E + IL++ +D L++RS N LK + L + +L Sbjct: 247 SLNIKDIFEEGNTEKEHSKTQNILIQSLD---LSIRSFNALKRANYTTVQQLEALSLDDL 303 Query: 290 LKTPNLGKKSLTEI 303 NLG+KS+ EI Sbjct: 304 KNIKNLGEKSINEI 317 >UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Francisella tularensis subsp. holarctica FSC200 RepID=UPI000169A5A9 Length = 224 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 10/226 (4%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHE 67 L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I DG + Sbjct: 7 LHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKINDGKVTS 66 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGPVTAADITHDGDVEIVKP 126 E + +I+LN+K L+V + E +T SG ++ + + Sbjct: 67 LEDVIPCDETVADIILNVKSLSVTLAEDVETGTITFELSGSEEEIFSEEAKLSEGLAITE 126 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 + IC + + + KV++G G+ PA +D G L+DA +SPV + Sbjct: 127 EVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVVFCDFE 178 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL V Sbjct: 179 IKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNIV 224 >UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCSP Length = 353 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 161/313 (51%), Gaps = 24/313 (7%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 E+V+ + +EPL RG+ +T+G LRR LLSS+ A ++I+ V HE+ T G++E Sbjct: 15 EKVNDFNTTFVIEPLARGYANTMGTVLRRTLLSSITSVAPFAIKINNVEHEFQTISGLKE 74 Query: 77 DILEILLNLKGLAVRVQGKDEVILTLNKSGI-------GPVTAADITHDGDVEIVKPQHV 129 D + ++ N++ +R +E+ N + I G + A+DI +EIV Sbjct: 75 DAITLVRNIRN--IRFVYNEEIFEKENLAKISFKTNKEGEIFASDIPEVSGLEIVNKDQY 132 Query: 130 ICHLTDENASISMRIKVQRGRGYV--PASTRIHSEEDER-----PIGRLL-VDACYSPVE 181 I ++ + S+ + +++GRG++ + + S+ R G+ L +D+ +SPV+ Sbjct: 133 IANIA-KGGSLEFDLFLRKGRGFIDFEENKNVISQYGSRLESSIKNGQFLAMDSDFSPVK 191 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD---LRDVR 238 + A + E + ++L I++ET+ T+ +EAI +AA I+ + + L + Sbjct: 192 KCAISFEELNSSSKLIEERLKIKIETDCTVSAKEAIEQAAKIIVAHFQIIGNINALETIE 251 Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E +EK E + P+ L L+VRS N L+ + + +++ ++ EL NLGKK Sbjct: 252 LFEENKEKKEREIKSTTPITKLGLSVRSENALRRAKYNTVEEVLGLSDEELSNIKNLGKK 311 Query: 299 SLTEIKDVLASRG 311 S I+D++ R Sbjct: 312 S---IQDIIEKRN 321 >UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 Tax=Euphyllophyta RepID=RPOA_ARATH Length = 329 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/316 (26%), Positives = 155/316 (49%), Gaps = 43/316 (13%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + L PL +G T+G A+RR LL + G +T + + + H+YS G+QE + EIL Sbjct: 29 YGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGIQESVHEIL 88 Query: 83 LNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 +NL + +R + G ++ + G G +TA DI VEI+ I LT E + Sbjct: 89 MNLNEIVLRSNLYGTRNALICV--QGPGYITARDIILPPAVEIIDNTQHIATLT-EPIDL 145 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA-ARVEQRTDLD 199 + +K++R RGY S ++ + ++R +DA + PVE +++ + ++ ++ Sbjct: 146 CIELKIERNRGY---SLKMSNNFEDRSYP---IDAVFMPVENANHSIHSYGNGNEKQEI- 198 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD-------------------------L 234 L +E+ TNG++ P+EA+ +A+ L F+ L Sbjct: 199 -LFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVTLPFFPFHNRL 257 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 ++R+ + K ++ F I +D LEL R NCLK IH + DL+ ++ +L+K + Sbjct: 258 VNLRKKK-KTKELAFQYIF---IDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIEH 313 Query: 295 LGKKSLTEIKDVLASR 310 + + +I D+L + Sbjct: 314 FHVEDVKKILDILEKK 329 >UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema circumcarinatum RepID=RPOA_ZYGCR Length = 356 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 61/344 (17%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 +I+ + + + PL G T+G A+RR LL + +T + G HEYST +G+ Sbjct: 18 EIQNARLHYGRFAVYPLFPGQAITIGTAIRRALLGEVHSTCITSAYVVGASHEYSTLKGI 77 Query: 75 QEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 +E I +ILLNLK + + + E IL N GI VTA I V++V I Sbjct: 78 RESIHDILLNLKDIVFKSDTLERQEGILLFNGPGI--VTAQHIKLPPVVQVVDNTQYIAR 135 Query: 133 LTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA-AR 191 L + SI + I ++ + +T ++ GR ++DA PV + Y++ + Sbjct: 136 L-EMPTSIEIHITLENTKTCTSLNTMPTTK------GRFILDAALKPVRNMNYSIHSLGE 188 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQPEVKEEKPEFD 250 + R ++ LV+E+ TNG++ P+E I +A+ L + L+ + + R + + +K F Sbjct: 189 GDMRQEM--LVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKVERYFQAKQNIHKKRMFT 246 Query: 251 P------------------ILLRP--------------------------VDDLELTVRS 266 P ++ +P +DDL+++VR+ Sbjct: 247 PTQSENLNMDQIEMIGGNKLIDQPLLPADSHLNSSLSLNIDNLVHLEGISIDDLQISVRA 306 Query: 267 ANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 +NCLK I+ I L+ T+ +L + NLGKKS+ +I V+A R Sbjct: 307 SNCLKKVGIYTIRQLLSYTQQDLFQIKNLGKKSVEQI--VIAIR 348 >UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas RepID=C1KR47_9CHLO Length = 352 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 49/332 (14%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 +A++ L PL G G TLGN RR+LL+ +PG A+T +++ E+ T G++E ++EI Sbjct: 26 YARLVLGPLAPGQGVTLGNTFRRLLLNDLPGVAITAAKLNETRTEFMTLPGIRESVVEIF 85 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGP---------------VTAADITHDGDVEIVKPQ 127 LNL+ + V +V+ I P + A D+ + V P Sbjct: 86 LNLRDI-VFFNTFPDVLAPQGTITISPRPQTDESKSFHTPRVICAGDMQLPEGITCVDPT 144 Query: 128 HVICHLTDENASISMRIKVQR--------------GRGYVPASTRIHSEEDERPIGRLL- 172 I L + + + ++ +++ G G+ P S +I S + E+ + Sbjct: 145 QPIATLMNGDTAFNLTFILEQSTGYRVWKKPTQSYGTGFYP-SPQIESVQIEQVKSGVFQ 203 Query: 173 -VDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA- 230 +D + PV+ + + V E + + + E+ TNG+I P A + A IL E A Sbjct: 204 PIDGNFMPVKNVNFAVH----EVQPHGEYIHFEITTNGSIHPHNAFKHAGAILTEITRAT 259 Query: 231 ------FVDLRDVRQP--EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV 282 V + + P +K F+ I ++ LEL++R+ NCLK I + DL Sbjct: 260 LQDPRPVVGIDEASTPVDTAVAQKAYFENIA---IEQLELSLRAYNCLKRAQILTLADLS 316 Query: 283 QRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + + LL N G+KS E+ L + G+ L Sbjct: 317 RESYSSLLALRNFGQKSAEEVAKALETYGIEL 348 >UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimonas parkeae RepID=C0JX08_9CHLO Length = 351 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 152/321 (47%), Gaps = 44/321 (13%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VLHEYSTKEG 73 +A L P G G T+ N LRR LL+++ G +T V+ + +HEYST G Sbjct: 47 YALFQLGPFSHGQGLTIANGLRRTLLNNIIGFGITSVKFEPKWVDISKEVFIHEYSTIPG 106 Query: 74 VQEDILEILLNLKGLAVRVQG-------KDEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 + E I EI+ NLK + +R + K + +T +K G+ + A I ++I+ Sbjct: 107 IWESIFEIIENLKKIKIRRENSPFEPFEKQVIRITQDKPGV--LRADSIKLPPFLKILNQ 164 Query: 127 QHVICHLTDENASISMRIKVQRGRG-YVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I + N + + I ++ G ++ + IH E C P++ + Y Sbjct: 165 NQPIVSMMSSNLILDIIITIEAQTGNHLCNNQFIHVSE-----------VCL-PIKWVNY 212 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE- 244 ++ + + L E+ T+GTI P+EA+ +AA I + F + ++ EVK Sbjct: 213 VIKTDPLLGSKSPESLFFEISTDGTITPQEALSKAADICIDLYSCFSTAQ--KELEVKSI 270 Query: 245 -----EKPEFDPILLRPV--DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + + I+ V ++L L+VR+ NCLK I+ + DL+ +++ +LL N GK Sbjct: 271 VKEKVTEEVKEEIITNKVTIENLGLSVRAYNCLKRANIYTVTDLLTKSKSDLLAMKNFGK 330 Query: 298 KSLTEIKDVLASRGLSLGMRL 318 KS E+ + L +R LG+ L Sbjct: 331 KSADEVYEALQNR---LGIDL 348 >UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEY4_CHLKE Length = 275 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 122/259 (47%), Gaps = 45/259 (17%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 I+ +A+ L RG T+ NALRR LL +P VT+V IDGV+HE+S+ GVQ Sbjct: 16 IQSQGEMYARFHLGTFFRGQALTVANALRRTLLGELPYLIVTKVHIDGVVHEFSSIPGVQ 75 Query: 76 EDILEILLNLKGLAVRVQGKDEVILT---------LNKSGIGPVTAADITHDGDVEIVKP 126 E +L+ILLNLK L + K I + L G VTAAD+ + V P Sbjct: 76 ESVLDILLNLKRLTFTISNKKFNIFSNSWLKTKVFLKIRGPAKVTAADLKLPPHLACVWP 135 Query: 127 QHVICHLTDENASISMRIKV-------------------------------QRGRGYVPA 155 H I L+ NA ++ +++ ++G+G Sbjct: 136 NHYIATLSS-NAELACVLELAVVHPKQKISIAKNEVGSKNKIFGKVTNDVFEKGKG--TE 192 Query: 156 STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEE 215 S +I ++ E+ +D YSP+ ++ Y + ++ + + + LV+E+ T+G+I+P++ Sbjct: 193 SKKILTDSIEKNKKIFSLDTNYSPIRKVNYVI--YELDSKKNSEYLVLEIVTDGSIEPKQ 250 Query: 216 AIRRAATILAEQLEAFVDL 234 A+R A L + F + Sbjct: 251 ALRFAFKQLTKLFYEFTQI 269 >UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=Fucus vesiculosus RepID=D1GJR1_FUCVE Length = 368 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 166/358 (46%), Gaps = 65/358 (18%) Query: 10 KPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 K + VD++ +++ + LE+ G+T+GN LRR LLS++ G + V G+ +E Sbjct: 6 KCKCVDLDLLNTNEFYGHFVFTALEKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAGINNE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK-DEVIL-TLNKSGIGPVTAADITHDGDVEIVK 125 ++ EGV+ED+ EI+LNLK + + + D+ L G +TA + +V+I+ Sbjct: 66 FALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNVKILN 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P + + ++DE + I + +K++ G+ Y+ A ++ E + + +D+ ++PV ++ + Sbjct: 126 PNNHLLTISDE-SLIEIEVKIEAGKSYILAK----DQKLEGALDFIPIDSNFAPVLKVNW 180 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA-----FVDLRDVRQP 240 + + + + ++L +E+ TNGT+ P +A+ +A T++ L F L + Sbjct: 181 YIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYMLSPISTIEFSCLDTYEKE 240 Query: 241 EV----------------------------------KEEKPEFDPI---------LLRPV 257 E+ K EK D I L++ + Sbjct: 241 EIHDTNHIKSLTYITDPISRDQNKTVLRSNLIKNKSKFEKINLDKINQVSIDEQKLIKNI 300 Query: 258 DDLE--------LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 307 DLE L+ R N L I++I DL+ L+ LG KS+ EIK+ L Sbjct: 301 VDLEYESLKNLGLSNRIINALNKVNINFISDLIHYPSSSLINIVGLGPKSVEEIKNKL 358 >UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 Tax=Embryophyta RepID=RPOA_CALFG Length = 340 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 35/309 (11%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + L PL +G T+G A+R+ LL + G +T + + V HEYST G++E + EIL Sbjct: 29 YGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYSTIVGIEESVHEIL 88 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 +NLK + ++ ++ G VTA DI VEIV I LT E ++ + Sbjct: 89 MNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHIASLT-EPINLCI 147 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 ++++R RGY + + + G +DA PV +++ + + L Sbjct: 148 ELQIERDRGYRMKAPNNYQD------GSYPIDAVSMPVRNANHSIHSYGSGNEKQ-EILF 200 Query: 203 IEMETNGTIDPEEAIRRAATIL---------AEQLEAFVDLRDV-------------RQP 240 +E+ TNG++ P+EA+ A+ L AE+ + ++L D R Sbjct: 201 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNRFTVSPFTLHDRLG 260 Query: 241 EVKEEKPEFDPILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 +++ K E I L+ +D EL R+ NCLK IH + DL+ ++ +L++ + + Sbjct: 261 NIRKNKKE---IALKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHFRIE 317 Query: 299 SLTEIKDVL 307 + +I D+L Sbjct: 318 DIKQILDIL 326 >UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1T9_9BRAD Length = 317 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/70 (62%), Positives = 58/70 (82%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 LL VDDLEL+VRSANCLK + I+++G+LVQ++E E+L+TPN G++SL EIKD+LA+ GL Sbjct: 240 LLERVDDLELSVRSANCLKKDGINHVGELVQKSEDEMLRTPNFGRRSLNEIKDLLAASGL 299 Query: 313 SLGMRLENWP 322 LGM L WP Sbjct: 300 HLGMDLSGWP 309 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 52/74 (70%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 L R +D+LEL+VR++ CLK + + +GD + +E ELL+ PN G+KSL E+K++L GL Sbjct: 157 LYRSIDELELSVRTSLCLKNDDVRLVGDFARNSEAELLRIPNFGRKSLNELKEILGQVGL 216 Query: 313 SLGMRLENWPPASI 326 LG+ L WPP ++ Sbjct: 217 QLGLALPEWPPPNV 230 >UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma synoviae 53 RepID=RPOA_MYCS5 Length = 333 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 152/314 (48%), Gaps = 38/314 (12%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 Q +S + ++ LERGFG+TL ALRRILLS++ G A V I+GV HE++ E V ED Sbjct: 18 QNNSYKKVLKIKGLERGFGNTLAVALRRILLSNITGIAPFCVRIEGVEHEFTALEKVSED 77 Query: 78 ILEILLNLKGLAVR-----VQGKDEVILTLNKSGIGPVTAA--DITHDGDVEIVKPQHVI 130 I+ IL NLK + + V+ + L+LN + +T+ +T+ VE+ I Sbjct: 78 IVTILSNLKKVVLNYDEDYVKDNQIIKLSLNANEDNRITSNHLTVTNAPRVEVQNKDVEI 137 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI----------------GRLLVD 174 L+ + + + ++ GRGYV E++++ I + +D Sbjct: 138 ATLSKPGV-LKLEMFLRAGRGYVDF------EDNKKFIEEKEKELKELSSLSKGAFIAMD 190 Query: 175 ACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234 + +SPV +A+ V ++L +E+ET + PE AI+ A IL + DL Sbjct: 191 SVFSPVVNVAWKVTELNTASLKIEEQLELELETKLGVTPESAIKLACKILVAHFQTIGDL 250 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLE-----LTVRSANCLKAEAIHYIGDLVQRTEVEL 289 D+ E+ + + + L + DD+E L++RS N L I + +L +L Sbjct: 251 TDLDSDEIFQSEKQS---LEKEEDDMEIRLLNLSMRSQNALAKSGIKTLNELASYPIEKL 307 Query: 290 LKTPNLGKKSLTEI 303 + NLG+KS EI Sbjct: 308 KEIKNLGEKSREEI 321 >UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Tax=Oltmannsiellopsis viridis RepID=RPOA_OLTVI Length = 508 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 3/140 (2%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE S +++ L P + G G T+GNA RR LLS + G +T +EIDGV HEYST GV+ Sbjct: 13 IEHNRSFYSRFQLGPFDLGQGLTVGNAFRRTLLSELSGVGITLIEIDGVCHEYSTLPGVR 72 Query: 76 EDILEILLNLKGLAVRVQGKDEV--ILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 E +L+ILLNLK L + V + LN +G G VTA D+ V V P I L Sbjct: 73 ESVLDILLNLKQLVLTSDTTFTVPQVGYLNFTGPGVVTAKDLKLPVSVYCVDPDQPIATL 132 Query: 134 TDENASISMRIKVQRGRGYV 153 + + A+++ + V +G+ Y+ Sbjct: 133 SAD-ATLNFKFLVCQGKNYI 151 >UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEL8_PEDMN Length = 365 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 61/356 (17%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +EQ +S +++ + P + G T+ N+LRR LLS G + VEIDG +HEYS EG++ Sbjct: 14 MEQETSWYSRFEIGPFQAGQALTVANSLRRTLLSDQQGVFLAAVEIDGAIHEYSRLEGLK 73 Query: 76 EDILEILLNLKGLAV-----------RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 E IL+ILLNL+ ++V ++ + + G V A D+ +E Sbjct: 74 ESILDILLNLRQVSVLLTDDTSKTASEFANQETFVGYFDLQGPMEVKAKDLKFPKQIECG 133 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRI------HSEEDERPIGR-------L 171 P I LT N + R + G + I + + IG L Sbjct: 134 NPNQHIATLT-RNCTFQGRFLILTNPGLTFKNQSIGDPLLFTKQVAKLEIGNRLLEKNWL 192 Query: 172 LVDACYSPVERIAYNVEAAR--VEQRTDLDKLVIEMETNGTIDPEEAIRRAAT--ILAEQ 227 V+ + + R+ Y VE EQ+ + +V+E+ TNGTI P++AI A T Sbjct: 193 YVNPITNAIRRVNYVVEQFGDVWEQK---EVVVLEVWTNGTIHPKQAIHSACTKLSTLFS 249 Query: 228 LEAFVDLRDVRQP-------EVK-------------------EEKPEFDPI-LLRPVD-- 258 + V+ + P +VK +E P D + +L +D Sbjct: 250 SLSSVNTTAFKFPASVARFKKVKTDSGADGNLTVKPMTEFSGQESPAGDKLTILFDLDIA 309 Query: 259 DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +L+L++++ LK I IG+L+Q + +L + NL + EI+ L GL+ Sbjct: 310 NLQLSLKTYLVLKNAKIQNIGNLLQYNKSDLTRLLNLANSQIEEIETALNVFGLAF 365 >UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus RepID=Q9BAC8_FUCVE Length = 226 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 124/224 (55%), Gaps = 11/224 (4%) Query: 10 KPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 K + VD++ +++ + L++ G+T+GN LRR LLS++ G + V G+ +E Sbjct: 6 KCKCVDLDLLNTNEFYGHFVFTALKKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAGINNE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILT-LNKSGIGPVTAADITHDGDVEIVK 125 ++ EGV+ED+ EI+LNLK + + + D+ L G +TA + +V+I+ Sbjct: 66 FALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNVKILN 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPAS-TRIHSEEDERPIGRLLVDACYSPVERIA 184 P + + ++DE + I + +K++ G+ Y+ A ++ D PI D+ ++PV ++ Sbjct: 126 PNNHLLTISDE-SLIEIEVKIEAGKSYILAKDQKLEGALDFIPI-----DSNFAPVLKVN 179 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + + + + + ++L +E+ TNGT+ P +A+ +A T++ L Sbjct: 180 WYIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYML 223 >UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Stigeoclonium helveticum RepID=RPOA_STIHE Length = 517 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 3/140 (2%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +E S + + + PLE G G TL NALRR LLS + G A+T VEI+GV HEYST GV+ Sbjct: 28 MENKKSFYGRFYIGPLEVGQGITLANALRRALLSELNGLAITTVEIEGVSHEYSTLMGVR 87 Query: 76 EDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 E +L+ILLNLK + ++ + K + G G + A DI ++ V P+ I L Sbjct: 88 ESVLDILLNLKQIVLKSKKSVKRAQTAYIYCQGPGVIRAGDIILPSSIQCVDPEQYIATL 147 Query: 134 TDENASISMRIKVQRGRGYV 153 + + + M++ +++G+ Y+ Sbjct: 148 SSD-GILKMKVIIRQGKNYL 166 >UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitochondrial n=1 Tax=Reclinomonas americana RepID=RPOA_RECAM Length = 222 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 109/209 (52%), Gaps = 16/209 (7%) Query: 25 KVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV--LHEYSTKEGVQEDILEIL 82 +V + PLE+ F + N LR+I+ G ++ ++I+G+ LH YS GV+ED+L +L Sbjct: 23 QVLIGPLEKNFSGSFANLLRKIIFRYTSGVSIIGLKINGIDSLHSYSLIPGVKEDVLNVL 82 Query: 83 LNLKGLAVRVQGKDE--VILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 NLK L +++ D ++LT+ K G + + DI +++I+ IC L + ++ I Sbjct: 83 NNLKHLLIQIDDYDYKPILLTIQKKGPYIIKSKDIICPSNIKILNDDLYICTL-ENDSQI 141 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 + + G GYV ST + + + D + P++ ++Y V T ++ Sbjct: 142 DLTLIGDIGCGYV-LSTYFGNRK-----SIVYSDTNFCPIKHVSY-----YVRSYTTYEE 190 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLE 229 L+ ++TNGT +P ++ A + L +++ Sbjct: 191 LIFYIKTNGTCNPLFVMKNAFSFLKDKIN 219 >UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria litorea RepID=B7T1W3_VAULI Length = 230 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 121/218 (55%), Gaps = 10/218 (4%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 K ++PL G G ++GN RRILL+ MP +T V G+ +E+ST +GV+ED+LEIL Sbjct: 18 FGKYIIKPLNLGMGVSIGNLFRRILLTQMPRTNITGVRFAGITNEFSTIKGVREDVLEIL 77 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD--GDVEIVKPQHVICHLTDENASI 140 LNLK + + +++ + + +G +T++ + ++ +V P I +T++ +++ Sbjct: 78 LNLKQIIFKGFKEEKTYVRIKITGPTVITSSCLQSALPDEITLVNPSQYIATITND-STL 136 Query: 141 SMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 +K++ + A+ + E + L VD SP+ +I ++V + E T ++ Sbjct: 137 EFELKIESEKKSNLANNQAIFESSD----FLEVDKITSPIRQILFDV-YKKSETETQ-EE 190 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 LV+++ T+G+I P +A+ + L + L + L++++ Sbjct: 191 LVLQIWTDGSITPIDALITSVK-LVQNLFTQITLKNLK 227 >UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ectocarpus siliculosus RepID=D1J731_ECTSI Length = 361 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 118/218 (54%), Gaps = 10/218 (4%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH-EYSTKEG 73 D+ S + LE+ G T+GN LRR+LLS++ G +T V + V H E++ +G Sbjct: 13 DLLSPSELYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDG 72 Query: 74 VQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 V+ED LE++LNLK + ++ + K L G VTA I ++++ P + + Sbjct: 73 VREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGSIKFSKGIKVLNPNNYLL 132 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI-AYNVEAA 190 ++D+ + + + +K++ G+ YV A ++ E L +D+ ++PV ++ +Y Sbjct: 133 TISDD-SFVEIHLKLEHGKAYVLAK----DQKLEGSTYFLPIDSNFAPVLKVNSYVKTLP 187 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + + TD++ L +E+ TNG++ P +A+ +A ++ L Sbjct: 188 QHIENTDVE-LHLEIFTNGSLLPHQALLQAKNMIGYML 224 >UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum punctulatum RepID=RPOA_STAPU Length = 383 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 72/353 (20%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 +++ L PL T+G A+RR LLS + G ++ I G +HEYST +GV+E + EIL Sbjct: 29 YSRFALSPLLVDQAMTIGVAIRRALLSEVEGISIISANIVGAVHEYSTLDGVRESVDEIL 88 Query: 83 LNLKGLAVR-VQGKD-------EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 LNLK + ++ +G E ++ G G VTA I + V P I L Sbjct: 89 LNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKFPSSILAVDPDQSIATLL 148 Query: 135 DENASISMRIKVQRG------------RGYV---------PASTRIHSEEDERPIGRLLV 173 +E + + + +++G +G+ A+ IHS D + + +LL+ Sbjct: 149 NE-TQLCIELFIRQGIAKQLTRTKKNHQGFFIDANFTPVQKANFSIHSVGDPKGLQQLLL 207 Query: 174 -----DACYSPVERIAYNVEAARVE----------------------QRTDLDKL----- 201 + +P E + Y A+ + Q +D + L Sbjct: 208 LEIWTNKTLTPAEAL-YQAHASLLNLFHQISPPLLHKELSPSKNILNQNSDSNSLGGSSF 266 Query: 202 --VIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR--PV 257 V+ +ET ++ + + + ++++ V L+ + +K D + + Sbjct: 267 GRVVSLETR-----RDSTQTNNSSIPKEIQPSVRLKSYTDTNLSIDKQMNDSVNKENLSI 321 Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 D+LEL+ R +NCLK I+ I DL+ T+ +LLK N G+KS+ ++ VL R Sbjct: 322 DELELSPRISNCLKKANINTIADLLNYTQEDLLKIKNFGRKSVEQVSLVLRKR 374 >UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella terrestris RepID=B2X253_9CHLO Length = 316 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 E + + + + P E G T+ NALRR LLS +PG +T VEI+GV HEYST GVQE Sbjct: 32 ENNQTFYGRFYIGPFEIGQSLTMANALRRSLLSEVPGLGLTSVEIEGVAHEYSTIPGVQE 91 Query: 77 DILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 + +ILLN+K + + K I SG + A D+ ++ V P I L Sbjct: 92 TVFDILLNIKNIVFKSTTYLKKAEIGYCRASGPKTLRAKDLLLPAHIQCVNPDQYIATLK 151 Query: 135 DENASISMRIKVQRGRGYV 153 + +++M++K+++G Y+ Sbjct: 152 SD-GTLNMKLKIRQGTHYL 169 >UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Tax=cellular organisms RepID=RPOA_NEPOL Length = 495 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 82/145 (56%), Gaps = 9/145 (6%) Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 L +DA + PV R+ Y VE + R ++LVI++ TNG++ P +A+ +AA IL L + Sbjct: 238 LHIDAVFFPVTRVNYRVEEEVINGRRR-EELVIDIWTNGSLSPRKALDQAAVILIRMLAS 296 Query: 231 F-----VDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 + + ++P K E I L P++ L+L+VRS NCLK I +G L+ T Sbjct: 297 LQAPPPLLIEPEKKPTTKTIAKE---IALTPIESLDLSVRSFNCLKRANITNVGKLIAYT 353 Query: 286 EVELLKTPNLGKKSLTEIKDVLASR 310 ELL+ N G KS +E+ DVL SR Sbjct: 354 RQELLQLKNFGTKSASEVVDVLNSR 378 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 8/137 (5%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + + PL G G TLGNALRRILL + G A T + G HE+ T G++E +LEIL Sbjct: 18 YGRFCVLPLPAGQGITLGNALRRILLGDLVGFAATSANLAGASHEFDTLPGIRESVLEIL 77 Query: 83 LNLKGLAVR---VQGKD----EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 LN+K L + + KD + +LN +G VTA D+ +++V P I L Sbjct: 78 LNIKQLVFKQISSRPKDTNRFAMRASLNLTGPATVTAKDLVLPSWMKVVDPSQYIATLAS 137 Query: 136 ENASISMRIKVQRGRGY 152 AS+ I++ +G GY Sbjct: 138 -GASLEFEIQLSQGSGY 153 >UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorella vulgaris RepID=RPOA_CHLVU Length = 278 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 45/261 (17%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 ++ S +A+ + RG T GN++RR LLS MPG +T+V I G HE++ V+ Sbjct: 16 VQDQGSLYARFHIGTFFRGQALTFGNSIRRALLSEMPGFLMTDVRIQGATHEFAVLPDVE 75 Query: 76 EDILEILLNLKGLAV--RVQGKDEV-----ILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 E +LEILLNLK R+ + L +G G V AADI V+ V P+ Sbjct: 76 ETVLEILLNLKKTVFVPRIPKNQKFETFQGFGFLKNNGPGKVRAADIRLPETVQCVSPEV 135 Query: 129 VICHLTDENASISMRIKVQ--------RGRGYVPAST---------RIHSEEDERPI--- 168 I LT A +S+R +Q + G + T + +E P Sbjct: 136 HIATLTS-GAELSLRFNLQFRNFSQLEKREGTFKSKTVAQAKTEDGNVQDTTNELPTLEK 194 Query: 169 ---------------GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDP 213 +L +D PV+++ Y +++ + ++ +++E+ T+G++ P Sbjct: 195 NSLFFQQLQNKRNSKDQLFLDTVPMPVQKVNYVIKSLNAKNGSEY--IILEIWTDGSLYP 252 Query: 214 EEAIRRAATILAEQLEAFVDL 234 +E++ A L + F ++ Sbjct: 253 QESVEFALRNLTDLFFQFANI 273 >UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI Length = 340 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 37/328 (11%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--VLHEYSTKE- 72 +E S + + +L PL RG G T+G+ALRR LL + G VT V+ V H +S+ Sbjct: 22 VESKRSHYGRFSLSPLLRGQGGTIGSALRRTLLRDVEGTNVTHVKFFNKRVKHLFSSSTI 81 Query: 73 -GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 G++E + +I++NL+ + R + + G VTA DI ++IV I Sbjct: 82 LGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVDGTQHIA 141 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLL-----VDACYSPVERIAYN 186 +T + + + +K+++ G + E PI + + Y PV + YN Sbjct: 142 SIT-KPIHLHVTLKIEKNWG--------ETTESIHPITKYFTRYIPTEIFYMPVRSVTYN 192 Query: 187 VEAARVEQRTDL-DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD--LRDVRQPEVK 243 V + E + D L+ E+ TNG + P+EA+ A L + + +D L V VK Sbjct: 193 VYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDVPLLHVEGSGVK 252 Query: 244 EEKPEFDPILLRP-------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 E P PI+ +D L L + + L+ I+ + D + ++ +L Sbjct: 253 ESIPL--PIVSNMNRTQEDLFVQHLFIDQLGLPSKISKSLRESHIYRVSDFMNYSQQDLK 310 Query: 291 KTPNLGKKSLTEIKDVLASR-GLSLGMR 317 K+S+ + ++L G++L +R Sbjct: 311 NLEYSKKESIEQTLEILHKYFGINLTLR 338 >UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlamydomonas reinhardtii RepID=RPOA_CHLRE Length = 550 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 12/149 (8%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE ++ + L P + TL N LRR LLS + G A+T +EI+GVLH++ST G++ Sbjct: 28 IENNTNFYGCFYLGPFDESLSQTLANDLRRTLLSELTGLAITSIEIEGVLHKFSTLTGMK 87 Query: 76 EDILEILLNLKGLAVRVQ-----------GKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 E +L+++ NL+ + +R + K I L+ +G + AAD+ ++ V Sbjct: 88 EPVLDLICNLQNIVLRKETISSTNMNYRATKKTYIGFLSVNGPRVIKAADLKLPAGLQCV 147 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYV 153 P I L E+ ++M+ + G+ Y+ Sbjct: 148 DPNQYIATLA-EDGFLNMKFNINEGKNYI 175 >UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z0_OEDCA Length = 442 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 37/215 (17%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + + P G G T+ NALRR LLS + AVT ++I V+H+Y T +G+QE + ++L Sbjct: 109 YGQFYIGPFFIGQGLTIANALRRTLLSELSSLAVTSIQIQDVVHQYQTIQGLQESVFDLL 168 Query: 83 LNLKGLAVRVQGKDEV--ILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASI 140 LN+K + ++ + V I L G + A D+ ++ V P+ I L+ E+ + Sbjct: 169 LNMKDIVLKSKTTIPVPQIGYLQVQGPCIIKAKDLLLPPFIQCVDPEQYIATLS-EDGIL 227 Query: 141 SMRIKVQRGR--------GY-------------VPASTRIHSEEDERPIG-------RLL 172 +M+ +++G+ GY T +HS ++ + L+ Sbjct: 228 NMKFVIRQGKHSLTHVTPGYDSFTQKYDQHSYNSTCDTNVHSNKNRNSLSLLNTYSKHLI 287 Query: 173 VDACYSPVERIAYNVEAARVEQRTDLDKLVIEMET 207 +DA ++PV ++ Y +E D D+L E ++ Sbjct: 288 IDASFNPVIKVNYIIEVL------DFDQLFFEKDS 316 >UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Tax=Scenedesmus obliquus RepID=RPOA_SCEOB Length = 478 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 FL + +E S + +L P + T+ NALRR LL+ + A+T +EI+GV HE Sbjct: 9 FLSCKECILENPRSFYGSFSLGPFKNSQSLTVANALRRTLLAELSNIAITHLEIEGVTHE 68 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L++LLN KG+A++ + L G G V A+D+ ++ V Sbjct: 69 YSTLVGVRESVLDLLLNFKGIALKNTSPVTKPLFGYLQVRGPGVVRASDLKFPPMIQCVD 128 Query: 126 PQHVICHLTDENASISMRIKV 146 P I L +EN + ++ ++ Sbjct: 129 PDQYIATL-NENGKLILKFRI 148 >UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN28_HODCD Length = 228 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 8/202 (3%) Query: 19 VSSTHAKVTLEPLERGF--GHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 ++ H TLE G+ HTL ALRR L++ + G AV + +DG H + EGV E Sbjct: 6 LTRAHKLTTLELEVWGWRAAHTLAVALRRTLMARVEGWAVVGLCVDGAAHALARAEGVIE 65 Query: 77 DILEILLNLKGLAVRVQ-GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 D+L + N + + G V+ + ++ G VTA + + +V +C + Sbjct: 66 DVLGVAANAARIVFEGECGSRRVVKAVVRASAGVVTAGQLVLPEGLRVVNTNERVCSV-G 124 Query: 136 ENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQR 195 V RG GY+ A+ + + G +VDA +SPV+R++Y V +A ++ Sbjct: 125 AGCVFRAEFVVARGVGYMRAA-QARARWSRVLAGYTVVDAHFSPVKRVSYKVSSAEDDRS 183 Query: 196 TDLDKLVIEMETNGTIDPEEAI 217 D +LVI ETNG +D A+ Sbjct: 184 CDRAQLVI--ETNG-VDGAHAV 202 >UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa filiformis RepID=B9VL93_9CHLO Length = 301 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 18/220 (8%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE+ + + P + G T N+LRR LL ++I GV HEYS+ GV+ Sbjct: 10 IEKTGQFYGCFKIGPFQTHSGMTFANSLRRTLLEDNSRYIFDTIQISGVEHEYSSLIGVR 69 Query: 76 EDILEILLNLKGLAVRVQ------GKD--EVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 E +++I+ NL+ L V GKD I LN +G G + A I D V P Sbjct: 70 ESVIDIIFNLQKLIFEVSDKVHLVGKDPKPQIAFLNFTGPGILRAQHIHLPKDFHFVYPD 129 Query: 128 HVICHLTDE---NASISMRIKVQRGRGYVPASTRIHSEEDERPI----GRLLVDACYSPV 180 I L + N + K+ + + Y ++ S P L +D+ + + Sbjct: 130 QYIATLEVDGKLNFKLFFSPKIFQ-KKYKSLHSKSGSGRQMPPSVLLENYLFLDSDFCSI 188 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRA 220 ER+ Y +++ + + ++ E+ TNG+I P++AI + Sbjct: 189 ERVNYTIQSGNQNPKEEF--ILFEIWTNGSIHPQKAIYQG 226 >UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVR6_9CHLO Length = 363 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 27/223 (12%) Query: 36 GHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK 95 G T+ NALRR LL+ C++T V I+ + HEYS +G++E + +IL+NLK + + G+ Sbjct: 48 GLTIANALRRTLLTESTECSITGVLIEDIKHEYSNLKGIKETVFDILMNLKKI-IFFSGQ 106 Query: 96 DEV---ILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQR---- 148 + L++ G + A ++ + + P I L + N+ I+M I + + Sbjct: 107 SFFKTQVSFLSEKGPIVLKAKNLKLPSFLFCINPDQYITTL-ETNSKINMTIFIDQSTPK 165 Query: 149 -------------GRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQR 195 + P + + ++++ L +D + P+ + Y ++ ++ Sbjct: 166 NFSYFTHCYYSNFSNNFFPFKLKKNFTQNQQS-NFLFLDTQFCPISNLNYKIKKKESQKE 224 Query: 196 TDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 L E+ TNG++ P +++A L L F LR+ + Sbjct: 225 I----LFFEIWTNGSVHPNFILKKAIKNLLLNLIPFHSLRNSK 263 >UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox carteri RepID=B8R199_VOLCA Length = 768 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 18/152 (11%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE +S + L P + T+ N +RR LLS + A+T +EI+G+LH+YS+ G++ Sbjct: 28 IENNTSFYGCFYLGPFDDSLSQTIANDIRRTLLSELTSLAITSIEIEGILHKYSSLPGMK 87 Query: 76 EDILEILLNLKGLAVRVQGKDEVILT--------------LNKSGIGPVTAADITHDGDV 121 E +L+++ NL+ + ++ K E+ T LN SG + A D+ + Sbjct: 88 ETVLDLICNLQSIVLK---KQEISFTNITLRSTKKTYRGFLNVSGPRVIKAMDLKLPSGL 144 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYV 153 + V P I L E+ ++M++ + G+ ++ Sbjct: 145 QCVDPNQYIATLA-EDGLLNMKLNINEGKNFI 175 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%) Query: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 R+ + + K L P+ L++++R+ LK I I DLV+ ++ +LLK NL Sbjct: 686 STRKTYLNQMKFYSQAALKAPIGILKISLRAYTALKKAGILTINDLVKCSKNDLLKINNL 745 Query: 296 GKKSLTEIKDVLASRGLSL 314 GKKSL I+ L+ GL+L Sbjct: 746 GKKSLVLIETSLSYLGLTL 764 >UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B7_CHLMO Length = 633 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE S + L P E T+ N LRR LLS + G A+ VEI+G HEYS+ GV Sbjct: 13 IENNRSFYGCFELGPFEPSQSLTIANTLRRTLLSEIYGLAIVSVEIEGASHEYSSLPGVH 72 Query: 76 EDILEILLNLKGLAVRVQGKDEV--ILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 E +L+ILLNLK + ++ K+ I L G G VT + + ++ V P I L Sbjct: 73 ESVLDILLNLKEIVLKKSIKNFTPQIGYLRARGPGVVTGSHLRLPPFIQCVDPDQYIATL 132 Query: 134 TDENASISMRIKVQRGRGYVPASTRI 159 + N ++++ VQ G ++ AS R+ Sbjct: 133 S-HNGFLNIKFVVQYGNKWL-ASGRM 156 >UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pseudendoclonium akinetum RepID=RPOA_PSEAK Length = 577 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +E ++ + + L P G T+ NALRR LLS +PG ++T VE+ G +EY GV+ Sbjct: 49 VENLTKFYGRFELGPFAPGQALTVANALRRSLLSQLPGTSITLVEVRGASNEYEIITGVR 108 Query: 76 EDILEILLNLKGLAVRVQGKDEVILT-----LNKSGIGPVTAADITHDGDVEIVKPQHVI 130 E IL+ILLNLK + V D I + L+ G G + A D+ + V P I Sbjct: 109 ESILDILLNLKQI---VLTSDFEIFSPQIGFLSVEGPGVIRANDLKLPSFIYAVDPNQYI 165 Query: 131 CHLTDENASISMRIKVQRGRGYV 153 L++ ++M+ + G+ Y+ Sbjct: 166 ATLSNS-GRLNMKFLICCGKNYI 187 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 42/186 (22%) Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 IG +DA + P+ R+ Y +E+ + D++++E+ TNG+I P AI +AA L Sbjct: 394 IGYFPIDAIFMPINRVNYLIESTEDIKLKIKDRVILEVWTNGSIHPRHAIHKAAKAL--- 450 Query: 228 LEAFVDLRDVR---------------QPEVKE-----------------------EKPEF 249 ++ F+ L+ +R Q ++K+ +K F Sbjct: 451 IQLFLPLQQIRTNLFLISDNSHFEEGQDKIKKRIDNFKKEALLKANPQIQANPQLKKRNF 510 Query: 250 DPILLR-PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 D LL + +LELT R +CLK I+ I DL+ ++ +LL N G++SL E++ L Sbjct: 511 DHRLLELDIANLELTARPYSCLKLANINTIEDLISYSQEDLLSIKNFGRRSLIEVQKALQ 570 Query: 309 SRGLSL 314 L+L Sbjct: 571 LMKLTL 576 >UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD subunit n=2 Tax=Planctomyces RepID=C1ZD20_PLALI Length = 319 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 46/68 (67%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 +L RPV D EL+VRS NCL + IH +GDL + +E +LL+ N G+ SL EI+D++ G Sbjct: 156 LLSRPVTDFELSVRSRNCLASMDIHTLGDLTRVSESDLLQGKNFGETSLVEIRDLMQQHG 215 Query: 312 LSLGMRLE 319 L +G L+ Sbjct: 216 LKVGQNLQ 223 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 247 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 P+ +L RPV DL L+VR+ C+ I +G+LVQ++ ELL T N G SL EI+ Sbjct: 249 PQEQALLSRPVSDLNLSVRARKCMARLQIGTLGELVQKSADELLATKNFGVTSLNEIRAQ 308 Query: 307 LASRGLSL 314 L L L Sbjct: 309 LTEHNLKL 316 >UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosira terrestris RepID=A6YGD4_LEPTE Length = 537 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 21 STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILE 80 S + + + P G G T+ N LRR LLS + G A+T VEI HEY T G+ E + + Sbjct: 24 SFYGRFEIGPFAHGQGITVANMLRRTLLSELSGLAITAVEIKEASHEYMTLPGISESVQD 83 Query: 81 ILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENA 138 I+LNLK L R K L+ G + A+ ++ V P I L N Sbjct: 84 IILNLKQLIFRSNFDLKQPEFGFLSIQGPAIIKASHFRLPSFIKCVDPNQYIATLA-FNG 142 Query: 139 SISMRIKVQRGRGY 152 +++++++ +G+ Y Sbjct: 143 QLNLKVQICQGKNY 156 >UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R234_9PLAN Length = 440 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 46/75 (61%) Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E + +L PV D EL+VRS NCL+ + +GDL + +E ELL + N G+ SL Sbjct: 276 EAQRRNDRLAQVLSIPVTDFELSVRSRNCLQKMGVRTLGDLTRTSEQELLASKNFGETSL 335 Query: 301 TEIKDVLASRGLSLG 315 EI+D+L S+GL LG Sbjct: 336 VEIRDMLHSKGLELG 350 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 227 QLEAFVDLRDVRQP--EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 +L F + V +P ++ P+ +L RP+ +L L+VR+ C+ + IG+LV++ Sbjct: 348 ELGQFAAEKAVAEPVLDLASMSPDEQALLERPISELNLSVRARKCMARLGLTLIGELVRK 407 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 T +LL+ N G SL E+++ L + G+ L Sbjct: 408 TGDDLLECKNFGVTSLNEVREKLTTLGIKL 437 >UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=Q7UWL0_RHOBA Length = 500 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLG 315 PV + EL+VRS NCL+ I IGDL + +E ELL + N G+ SL EI+++L+ +GLSLG Sbjct: 351 PVANFELSVRSRNCLQKMGIETIGDLTRHSEQELLSSKNFGETSLVEIREMLSQKGLSLG 410 Query: 316 M----RLENWPP 323 + N PP Sbjct: 411 QFAGEKKSNDPP 422 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 42/68 (61%) Query: 247 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 P+ +L RP+ DL L+VR+ C+ I+ IG+L+++T ++L+ N G SL E+++ Sbjct: 430 PDEQALLERPIADLNLSVRARKCMTRLQINSIGELIRKTGDDMLECKNFGVTSLNEVREK 489 Query: 307 LASRGLSL 314 L GL + Sbjct: 490 LGDLGLKM 497 >UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY14_DUNSA Length = 547 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 26/162 (16%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 IE S + L + G T+ NALRR LLS G A+ V+ID V HEYST GV+ Sbjct: 6 IENNKSFYGCFYLGSFDSGQSITVANALRRSLLSDCTGLAIISVKIDAVQHEYSTLPGVR 65 Query: 76 EDILEILLNLKGLAVR-----------VQGK------DEVILTLNK--------SGIGPV 110 + +L+ILLN K + ++ + K D+V T K G G + Sbjct: 66 DSVLDILLNFKEIVLKKVKNPFGGPNGYKNKGLSSVYDKVGSTFFKPVVGYLKVKGPGII 125 Query: 111 TAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGY 152 A D+ ++ V P I L E+ ++++ + G+ Y Sbjct: 126 RAKDLRLPPFIQCVDPNQYIATLA-EDGVLNVKFVIMEGKSY 166 >UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alpha chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B80 Length = 458 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 43/64 (67%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLG 315 P+ D EL+VRS NCLK I +GDL + TE +LL + N G+ SL EI+ ++ ++GL +G Sbjct: 308 PITDFELSVRSRNCLKRMNIRTLGDLTRVTEPQLLASKNFGETSLDEIRAIMVTKGLRIG 367 Query: 316 MRLE 319 L+ Sbjct: 368 QSLD 371 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%) Query: 247 PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 PE L +PV DL L+VR+ C+ I +G+LVQRT ELL+ N G+ SLTE+++ Sbjct: 388 PEEQATLGKPVSDLNLSVRARKCMNRLNIGTLGELVQRTADELLEAKNFGQTSLTEVRER 447 Query: 307 LASRGLSL 314 L L L Sbjct: 448 LQQFNLKL 455 >UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AQ59_BABBO Length = 610 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 28/216 (12%) Query: 39 LGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNL------------- 85 L N+LRR+ + +T + I G+ +E+ + G++ED ++ NL Sbjct: 237 LLNSLRRVAKRHLGAGRITALRIPGMKNEFYSIVGLREDFFDLSRNLTKVIFRNVPMTAT 296 Query: 86 -----------KGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 KG + V G E+ T K G+G +++ D +EIV IC L+ Sbjct: 297 FHRPLIGRLRLKGPIIAVAGHIELDQTFQKEGVG--SSSGSKDDRRIEIVNKNQYICALS 354 Query: 135 DENASISMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 +A + M +K++ YV P D P G + + +P+E A++ + ++ Sbjct: 355 -RDAYLDMEVKIEYIANYVMPEKGPESLNRDITPDGFIHFSSSCTPIEVFAFDGDRRGID 413 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + + + + +E+ T+G+ P A+ AT + E Sbjct: 414 EESTSEIVTLELHTDGSTTPRLALLNCATFIETWFE 449 >UniRef50_Q7M1B7 RNA polymerase chain n=1 Tax=Escherichia coli RepID=Q7M1B7_ECOLX Length = 94 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 40/77 (51%), Gaps = 35/77 (45%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDI GFGHTLGN ILLSSMPG Sbjct: 1 MQGSVTEFLKPRLVDI-----------------GFGHTLGN----ILLSSMPG------- 32 Query: 61 IDGVLHEYSTKEGVQED 77 YSTKEG Q + Sbjct: 33 -------YSTKEGXQXN 42 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/34 (67%), Positives = 24/34 (70%), Gaps = 8/34 (23%) Query: 219 RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPI 252 RAATI A Q DVRQPEVKEEKPEFDP+ Sbjct: 55 RAATIXAXQ--------DVRQPEVKEEKPEFDPL 80 >UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q053_9BACT Length = 380 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 41/64 (64%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 +L P+ D EL+VRS NCL+ IH + DL + +E +LL N G+ SL EIK +L +G Sbjct: 293 VLNIPISDFELSVRSRNCLEKMNIHTLRDLTRISEPDLLTFKNFGETSLNEIKAILIQKG 352 Query: 312 LSLG 315 L LG Sbjct: 353 LQLG 356 >UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putative n=2 Tax=Piroplasmida RepID=Q4UG79_THEAN Length = 680 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 L+ I + K + P G T+G+ L+ + S PG AV V+I +++ +T + Sbjct: 252 LIRIPDTGRLYQKFYMGPYPVTMGWTIGSLLKVMTQSRCPGHAVVAVKIHN-MNKDTTVD 310 Query: 73 GVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 GV +D+L I LN K +A++ GK+ + T K G V A + V+I P+ I Sbjct: 311 GVADDLLNIALNFKMVALQTLEPGKEARVRTKIK-GPAMVCAGALEWPPFVKICNPESYI 369 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTR 158 L +E A + + IK++ GRG+ A ++ Sbjct: 370 TKL-EEGAELDLEIKIEWGRGFWMADSK 396 >UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14PS2_SPICI Length = 111 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 44/70 (62%) Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 ++ E + +L +DDLE+T R+ CL+ I+ + DLV +TE E+ NLG+KSLTEIK Sbjct: 40 DETERNQLLNHSIDDLEITQRTQICLEKAKIYRLSDLVSKTENEIKNIKNLGEKSLTEIK 99 Query: 305 DVLASRGLSL 314 + + GL Sbjct: 100 EKMHELGLHF 109 >UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative n=2 Tax=Theileria RepID=Q4UCN2_THEAN Length = 587 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 54/242 (22%) Query: 39 LGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDE- 97 L N+LRR+ + +T + I G+ +E+ + G++ED E++ NL+G+ + K Sbjct: 181 LLNSLRRVAKRHLGSGRITALRIPGMENEFYSVVGLREDFFELVRNLRGVIFKNVPKTAT 240 Query: 98 ----VILTLNKSGIGPV----------------TAADI---------------------- 115 VI TL G P+ TA+DI Sbjct: 241 FHRPVIATLRLKG--PIIAVAGHLKFDNKRSTKTASDIDNKTENKNDNTDTKADNEEGVI 298 Query: 116 -------THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYV-PASTRIHSEEDERP 167 + G++E++ H IC L+ + ++M +K++ YV P D P Sbjct: 299 NDYVYDKKYTGEIEVINKNHYICSLS-QGCYLTMDVKIEYISNYVIPEFGPESLNRDITP 357 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 G + + +PVE + E +++++ + + +E+ T+G+ P A+ R+AT L Sbjct: 358 DGFIHFCSSCNPVEIFGFTGERRGLDEQSTSEIVSLELHTDGSATPRVALLRSATFLLNW 417 Query: 228 LE 229 + Sbjct: 418 FD 419 >UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, putative n=3 Tax=Plasmodium RepID=Q8IKB1_PLAF7 Length = 861 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G+ ++ + + + G A+ +++ ++E + Sbjct: 469 IIKYPQNGKLYQKFYIGPLNITDGHTFGSLIKYVCQTQIYGYAIVGIKVHN-MNEDTKIN 527 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGI--GP--VTAADITHDGDVEIVKPQH 128 VQED+LEI LN+ + + + E+ L N I GP + A I ++I+ +H Sbjct: 528 NVQEDLLEIALNISDVCIYSK---EINLESNIRLIFKGPLMLVAGMIPLPSHLKIINKEH 584 Query: 129 VICHLTDENASISMRIKVQRGRGY 152 IC + E+ I + IK++ G+G+ Sbjct: 585 YICTIK-EDGFIDISIKIEYGKGH 607 >UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,truncated, putative n=6 Tax=Plasmodium RepID=B3L930_PLAKH Length = 805 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 9/144 (6%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G L+ + + + G A+ +++ ++E + + Sbjct: 404 IIKYPQNGRLYQKFYIGPLNITDGHTFGTLLKYVCQTQVYGYAIVAIKVHN-MNEDTRID 462 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGI--GP--VTAADITHDGDVEIVKPQH 128 VQED+LEI LNL + + + E+ + N I GP V A I +++V + Sbjct: 463 NVQEDLLEIALNLSDVCIYSK---EINIETNVRLIFKGPLMVVAGMIPLPSHLQVVNKEQ 519 Query: 129 VICHLTDENASISMRIKVQRGRGY 152 IC L E+ + + IK++ G+G+ Sbjct: 520 YICTLK-EDGYLDISIKIEYGKGH 542 >UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative n=9 Tax=Plasmodium RepID=B3LBN8_PLAKH Length = 674 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 11/197 (5%) Query: 41 NALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVR-----VQGK 95 NA RR+ + + G VT + I + HE+ GV+E+ ++ NL+ + + + Sbjct: 322 NAFRRVAMKHLKGGRVTALRIPNMKHEFYCIVGVRENFFDLAQNLRQITFKNVPENIDMD 381 Query: 96 DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPA 155 + + G V A + +EIV IC ++ + + M +K++ YV Sbjct: 382 NYITGKFRIKGPMIVVAGHMQLPKGIEIVNKNQYICSVS-AGSYLEMDVKIESIEEYV-- 438 Query: 156 STRIHSEEDERPIGR---LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTID 212 S+ R I + + + +PVE + + + T + ++EM T+G+I Sbjct: 439 MPEYGSQSRNRDICKDNFIHFSSSCTPVEYFGFMGQRRGINLDTLGEINIVEMHTDGSIT 498 Query: 213 PEEAIRRAATILAEQLE 229 P+ A+ + ++E + Sbjct: 499 PKSALLKTIDYISENFQ 515 >UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6I0_ACIDE Length = 222 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 243 KEEKPE--FDPILLRPVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 ++ PE DPIL RP+ ++ ELT L A +H +GDLVQ + L++ + Sbjct: 129 RKYAPEALLDPILFRPISEIYELTDPVIALLVAAGVHRLGDLVQMSPTALMRIRGFDVLA 188 Query: 300 LTEIKDVLASRGLSLGMRLENW 321 + I++ L GL +GM L W Sbjct: 189 MERIEEGLTIFGLKVGMALPGW 210 >UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWM7_MONSK Length = 324 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VLH 66 E S + K L L++G G T+ NALRR+LL + G +T+V+ + LH Sbjct: 35 FENSSLHYGKFYLSGLKKGQGITVANALRRVLLYDIMGLGITKVKFNSKNNENLSSQKLH 94 Query: 67 EYSTKEGVQEDI 78 E+ST G++E I Sbjct: 95 EFSTISGIRESI 106 >UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQ35_ALKMQ Length = 912 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 35/50 (70%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 +++L L+VR+ NCLK+ ++ Y L+ + EL+ PN+G+K+L E++ + Sbjct: 98 IENLNLSVRAFNCLKSTSVDYYSQLIDVLDEELIAIPNMGRKTLLELEHI 147 >UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F4D Length = 808 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 34/49 (69%) Query: 260 LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 L+L +RS NCL++ I I DL++ ++ ELL+ NLG++SL I D ++ Sbjct: 147 LDLDIRSTNCLRSRGIDKIEDLLKLSDTELLRIDNLGRRSLKLIIDSIS 195 >UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bigelowiella natans RepID=RPOA_BIGNA Length = 358 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 76/345 (22%), Positives = 133/345 (38%), Gaps = 66/345 (19%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 +++ + P + N LRR+LLS +T V I G HEYS GV+E L++ Sbjct: 20 YSRFYIGPFLKNQAFLYSNVLRRVLLSDSSNIVITAVNIVGAKHEYSLLPGVRESSLDL- 78 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGI------GP--VTAADITHDGDVEIVKPQHVICHLT 134 L L V KD + NKS GP + +DI + V I ++ Sbjct: 79 --LLNLKELVFVKD-IYTKFNKSYFAYLKSNGPKIIRCSDIILPNTIYAVDSTQYIATIS 135 Query: 135 DENASISMRIKV--------QRGRGYVPASTRIHSEED--ERPIGRLLVDACYSPVERIA 184 + N S+ +++K+ Y S + D E+ L++D +S V ++ Sbjct: 136 N-NKSLILKMKLTANLLNNFYSNLNYELNSLLSYYTNDILEKTNFSLIIDPNFSCVNKV- 193 Query: 185 YNVEAARVEQRTDL-DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 N ++ + D + +E+ TN + P I+ + + + F+ + D ++K Sbjct: 194 -NSSLISLDNLENYNDSISLEVWTNSSYSPRIIIQNS---IKSMVNLFLSIYDTSFIDIK 249 Query: 244 EE------------------------------------KPEFDPIL-LRPVDDLELTVRS 266 E K FD L L +D+L+L++ S Sbjct: 250 LENSDNFLENHLVSLSNRATFFKKSFFNICTEFNTVKYKTSFDKNLTLISIDELDLSIYS 309 Query: 267 ANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 LK I + DL + + L + N+ K+L I+ + G Sbjct: 310 KFLLKRHNILTLYDLFKIDKRVLERFYNISYKTLQSIERKMVKYG 354 >UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella uncinata RepID=Q2WGF4_SELUN Length = 245 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 13/203 (6%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPG-CAVTEVEIDGVLHEYSTKEGVQEDILEI 81 H++ + P + G TLG A+RR G C + + HEY GV+E + E Sbjct: 27 HSRSIIPPPKIGQASTLGIAMRRAPPGESEGACTTPAGSPERINHEYPAIAGVRESVHET 86 Query: 82 LLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASIS 141 +NLK +A+ + G G V A D + I+ P +T + S S Sbjct: 87 SMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGIIYPAQHAATVTRKIRS-S 145 Query: 142 MRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD---L 198 +V+ G GY R + E ++ G DA P+ Y++ R+E + Sbjct: 146 TGSRVEGGCGY----RRRNMVEYQK--GSPPPDAVSMPIRNANYSIH--RLESHSGGIMK 197 Query: 199 DKLVIEMETNGTIDPEEAIRRAA 221 + E T+G+ P EA A+ Sbjct: 198 EMPPPEARTDGSPTPGEATYEAS 220 >UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=A3ZU45_9PLAN Length = 93 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 259 DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 ++ LTVR+ NCL+ I + DL+ T +LL N G+K+L E+ L S G Sbjct: 26 EIGLTVRTTNCLEERGIFTVRDLLNCTRADLLSISNFGEKTLDEVYSSLESIGF 79 >UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VLF1_9RHOB Length = 562 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 270 LKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 + E I +G VQ T ++L+ LGKKS E + L + GLSLGM L W Sbjct: 1 MAKEGIVLVGSFVQLTAGDILRKQGLGKKSYREARATLEALGLSLGMELCGW 52 >UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6A3_9PLAN Length = 69 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 307 ++VR+ N LK +H IGDLV+ + +LL PN G+++L E D+ Sbjct: 1 MSVRTVNYLKEHKVHTIGDLVKLKQEDLLSIPNFGEQTLQECIDLF 46 >UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putative n=3 Tax=Toxoplasma gondii RepID=B9PR73_TOXGO Length = 837 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 41 NALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAV 90 NALRR LS + A++ V+I+G HE+ + G++EDI++ + N G V Sbjct: 74 NALRRTSLSRLESLAISAVKIEGAKHEFYSLPGIREDIVDDIFNNLGKIV 123 >UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX76_9BACT Length = 145 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLG 315 P+ DL L R AN L+ + +G+L ++L +PNLG++SL +++ VL G SL Sbjct: 80 PIRDLPLPTRIANGLRRMGVRTLGELTALHAEDILLSPNLGERSLDQLRHVLGLIGRSLS 139 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 DDL ++ R N I +GDL+ +TE +LL+ +G K++ E++D L +R L Sbjct: 1333 FDDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNL 1388 >UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5N0_9BURK Length = 77 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 P+D L+L R N L + I +GDL + +LLK P G KSL E++ L G SL Sbjct: 13 PLDLLDLNFRVTNRLASAGIFRVGDLCVCSASDLLKMPGFGVKSLQEVERSLQRAGRSL 71 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 ... 445 e-123 UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 ... 435 e-121 UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 T... 406 e-112 UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 ... 405 e-111 UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 T... 401 e-110 UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390... 400 e-110 UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 ... 391 e-107 UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 T... 388 e-106 UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Ta... 386 e-106 UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 T... 386 e-106 UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 385 e-106 UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 T... 385 e-105 UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 384 e-105 UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 T... 384 e-105 UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 T... 383 e-105 UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 T... 381 e-104 UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 T... 380 e-104 UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Ta... 378 e-103 UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 T... 376 e-103 UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 T... 376 e-103 UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Ta... 375 e-102 UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 ... 374 e-102 UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Ta... 372 e-101 UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 T... 371 e-101 UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Ta... 370 e-101 UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 ... 370 e-101 UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subuni... 369 e-100 UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Ta... 368 e-100 UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 T... 368 e-100 UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 T... 367 e-100 UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Ta... 366 e-100 UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdema... 365 e-99 UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 ... 365 e-99 UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Ta... 362 1e-98 UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 T... 358 2e-97 UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 T... 356 4e-97 UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 ... 355 1e-96 UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 T... 354 3e-96 UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 T... 352 1e-95 UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 T... 351 2e-95 UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 351 2e-95 UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Ta... 351 2e-95 UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 T... 346 7e-94 UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 T... 346 9e-94 UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 T... 345 1e-93 UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Ta... 343 5e-93 UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=... 341 2e-92 UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Ta... 341 3e-92 UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Ta... 337 3e-91 UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 T... 335 2e-90 UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain... 334 3e-90 UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Ta... 332 8e-90 UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas... 331 3e-89 UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP al... 330 4e-89 UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Ta... 329 7e-89 UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 329 1e-88 UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Ta... 327 3e-88 UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimo... 326 9e-88 UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacte... 324 2e-87 UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Ta... 324 3e-87 UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Ta... 321 2e-86 UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 T... 321 2e-86 UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 T... 321 3e-86 UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Ta... 317 3e-85 UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chlor... 317 4e-85 UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 T... 316 6e-85 UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha... 315 1e-84 UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Ta... 314 3e-84 UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=... 314 3e-84 UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis... 312 1e-83 UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 T... 312 1e-83 UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Ta... 312 1e-83 UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Ta... 311 2e-83 UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Ta... 310 4e-83 UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Ta... 306 7e-82 UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 ... 305 2e-81 UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Ta... 304 3e-81 UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 301 3e-80 UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 299 8e-80 UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 T... 297 2e-79 UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=... 297 3e-79 UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 296 6e-79 UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 296 6e-79 UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 T... 291 2e-77 UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=... 289 1e-76 UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax... 288 2e-76 UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Ta... 287 3e-76 UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Ta... 287 4e-76 UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Ta... 285 1e-75 UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33... 285 2e-75 UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 T... 283 7e-75 UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 T... 282 1e-74 UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 T... 281 2e-74 UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 ... 280 4e-74 UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 279 8e-74 UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 T... 278 2e-73 UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Ta... 277 3e-73 UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas Re... 276 9e-73 UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 275 1e-72 UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20... 275 2e-72 UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycopla... 272 2e-71 UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Ta... 270 5e-71 UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragm... 268 1e-70 UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Ta... 266 7e-70 UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalp... 264 4e-69 UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimo... 257 4e-67 UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Ta... 255 1e-66 UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta... 251 2e-65 UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 250 3e-65 UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=... 250 5e-65 UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Frag... 245 2e-63 UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Ta... 244 3e-63 UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermob... 240 5e-62 UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Ta... 234 4e-60 UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomo... 232 1e-59 UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Ta... 217 4e-55 UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 217 5e-55 UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=F... 216 7e-55 UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlo... 211 2e-53 UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 T... 209 9e-53 UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragmen... 207 4e-52 UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Ta... 203 7e-51 UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hy... 201 2e-50 UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogoni... 201 2e-50 UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Ta... 198 2e-49 UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragm... 197 5e-49 UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa fi... 195 2e-48 UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Ta... 192 1e-47 UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria lit... 186 8e-46 UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 186 1e-45 UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Ta... 182 1e-44 UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=... 177 4e-43 UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha... 176 1e-42 UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella ... 174 3e-42 UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomon... 173 9e-42 UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative... 171 4e-41 UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosir... 169 1e-40 UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitoc... 169 1e-40 UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Ta... 168 3e-40 UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Ta... 164 4e-39 UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Ta... 164 5e-39 UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox cart... 160 7e-38 UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliel... 160 7e-38 UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Ta... 159 1e-37 UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,trunc... 158 3e-37 UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia... 158 3e-37 UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putativ... 147 7e-34 UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative ... 146 8e-34 UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, puta... 146 1e-33 UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subu... 142 2e-32 UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Ta... 114 3e-24 UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Ta... 102 2e-20 UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain... 98 5e-19 UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candida... 95 3e-18 UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alph... 94 5e-18 UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 ... 93 2e-17 UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD... 92 2e-17 UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiropl... 84 7e-15 UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomast... 82 3e-14 UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovo... 73 1e-11 UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1... 67 8e-10 UniRef50_Q7M1B7 RNA polymerase chain n=1 Tax=Escherichia coli Re... 48 4e-04 Sequences not found previously or not previously below threshold: UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Ta... 141 4e-32 UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 T... 130 6e-29 UniRef50_Q4N9I8 DNA-directed RNA polymerase, alpha subunit, puta... 126 1e-27 UniRef50_B9Q9G8 RNA polymerase Rpb3/Rpb11 dimerisation domain-co... 118 4e-25 UniRef50_B6K900 RNA polymerase Rpb3/Rpb11 dimerization domain-co... 118 4e-25 UniRef50_Q06FN2 Putative DNA-directed RNA polymerase subunit alp... 88 4e-16 UniRef50_Q8SL86 DNA-directed RNA polymerase subunit alpha n=1 Ta... 82 3e-14 UniRef50_Q8SL88 DNA-directed RNA polymerase subunit alpha n=1 Ta... 73 1e-11 UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putativ... 73 2e-11 UniRef50_Q8SL90 DNA-directed RNA polymerase subunit alpha n=1 Ta... 71 5e-11 UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain... 69 2e-10 UniRef50_Q2EEW7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 65 3e-09 UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 ... 64 5e-09 UniRef50_A6C7Z0 Serine/threonine protein kinase n=2 Tax=Planctom... 64 7e-09 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 61 7e-08 UniRef50_P48337 DNA-directed RNA polymerase subunit alpha n=2 Ta... 61 8e-08 UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 ... 60 1e-07 UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax... 59 2e-07 UniRef50_Q8SL92 DNA-directed RNA polymerase subunit alpha n=1 Ta... 59 3e-07 UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella ... 59 3e-07 UniRef50_P34778 DNA-directed RNA polymerase subunit alpha n=1 Ta... 59 3e-07 UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 58 4e-07 UniRef50_Q5JJF4 DNA-directed RNA polymerase subunit D n=2 Tax=Th... 58 4e-07 UniRef50_B1INQ5 Dna-directed rna polymerase alpha chain (Rnap al... 58 7e-07 UniRef50_D1H4E8 Whole genome shotgun sequence of line PN40024, s... 57 1e-06 UniRef50_Q6VAG4 Putative uncharacterized protein n=6 Tax=Bactero... 57 1e-06 UniRef50_B2J0X0 RNA polymerase, alpha subunit domain protein n=1... 56 1e-06 UniRef50_Q8U0E4 DNA-directed RNA polymerase subunit D n=7 Tax=Th... 56 1e-06 UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Plancto... 56 1e-06 UniRef50_A7M3S5 Putative uncharacterized protein n=7 Tax=Bactero... 55 3e-06 UniRef50_UPI000197AD37 hypothetical protein BACCOPRO_01772 n=1 T... 55 4e-06 UniRef50_C5SIY2 Putative uncharacterized protein n=1 Tax=Asticca... 52 2e-05 UniRef50_UPI000197BA40 hypothetical protein BACCOPRO_01755 n=1 T... 52 4e-05 UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobactera... 52 4e-05 UniRef50_UPI00016C679A hypothetical protein CdifQCD-7_20312 n=1 ... 51 5e-05 UniRef50_Q97B93 DNA-directed RNA polymerase subunit D n=3 Tax=Th... 51 5e-05 UniRef50_A8SD09 Putative uncharacterized protein n=1 Tax=Faecali... 51 7e-05 UniRef50_C1EL51 Conserved domain protein n=81 Tax=Bacteria RepID... 50 1e-04 UniRef50_Q2SGK7 Serine/threonine protein kinase n=2 Tax=Gammapro... 50 1e-04 UniRef50_A3ZPK6 DNA-directed RNA polymerase, alpha subunit n=1 T... 50 1e-04 UniRef50_D0TJA1 Predicted protein n=1 Tax=Bacteroides sp. 2_1_33... 49 2e-04 UniRef50_B5ID28 RNA polymerase n=3 Tax=Euryarchaeota RepID=B5ID2... 49 3e-04 UniRef50_UPI000197BA3F hypothetical protein BACCOPRO_01754 n=1 T... 49 3e-04 UniRef50_A9F5X1 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 49 3e-04 UniRef50_Q57648 DNA-directed RNA polymerase subunit D n=12 Tax=M... 49 3e-04 UniRef50_D1C976 Helix-hairpin-helix motif protein n=7 Tax=Bacter... 48 4e-04 UniRef50_Q01V32 RNA polymerase, alpha subunit domain protein n=1... 48 4e-04 UniRef50_A8H4Z2 RNA polymerase sigma factor n=1 Tax=Shewanella p... 48 5e-04 UniRef50_C0JWW4 Alpha subunit of RNA polymerase n=1 Tax=Pycnococ... 48 6e-04 UniRef50_C6J496 Putative uncharacterized protein n=1 Tax=Paeniba... 48 7e-04 UniRef50_D2S452 Putative uncharacterized protein n=1 Tax=Geoderm... 46 0.002 UniRef50_D1C4N8 Putative uncharacterized protein n=1 Tax=Sphaero... 46 0.002 UniRef50_D1R556 Putative uncharacterized protein n=1 Tax=Parachl... 46 0.002 UniRef50_A5N5E6 Putative uncharacterized protein n=3 Tax=Clostri... 45 0.004 UniRef50_C7RJ33 Serine/threonine protein kinase n=1 Tax=Candidat... 45 0.004 UniRef50_Q8SL94 DNA-directed RNA polymerase subunit alpha n=1 Ta... 44 0.005 UniRef50_D1VQ00 Putative uncharacterized protein n=1 Tax=Frankia... 44 0.007 UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospi... 44 0.009 UniRef50_C6Z4I8 Putative uncharacterized protein n=3 Tax=Bactero... 44 0.010 UniRef50_B0R4Y2 DNA-directed RNA polymerase subunit D n=11 Tax=H... 43 0.012 UniRef50_D1VE21 Serine/threonine protein kinase n=1 Tax=Frankia ... 43 0.013 UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Ac... 43 0.014 UniRef50_D0LS71 Serine/threonine protein kinase n=1 Tax=Haliangi... 42 0.024 UniRef50_A5EC86 Putative uncharacterized protein n=1 Tax=Bradyrh... 42 0.028 UniRef50_B0SFJ1 Putative uncharacterized protein n=2 Tax=Leptosp... 42 0.037 UniRef50_UPI00006A0F8E UPI00006A0F8E related cluster n=3 Tax=Xen... 41 0.055 UniRef50_A5ZLL3 Putative uncharacterized protein n=2 Tax=Bactero... 41 0.075 >UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 Tax=cellular organisms RepID=RPOA_SHEPC Length = 329 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 290/329 (88%), Positives = 310/329 (94%), Gaps = 1/329 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQV+ST AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS+KEGVQEDILEILLNLKGLAV ++GKDE +LTL+KSG GPV AADITHDGD Sbjct: 61 IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 V IV P HVICHLT N ISMRI+V+RGRGYVPAS R +E+D+RPIGRLLVDA +SPV Sbjct: 121 VTIVNPDHVICHLTGNN-DISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 RIAYNVEAARVEQRTDLDKLVI+M TNGTIDPEEAIRR+ATILAEQL+AFV+LRDV +P Sbjct: 180 ARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E+KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL Sbjct: 240 ELKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 TEIKDVLASRGLSLGMRLENWPPAS+AD+ Sbjct: 300 TEIKDVLASRGLSLGMRLENWPPASLADD 328 >UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 Tax=Bacteria RepID=RPOA_MARAV Length = 334 Score = 435 bits (1120), Expect = e-121, Method: Composition-based stats. Identities = 239/329 (72%), Positives = 277/329 (84%), Gaps = 1/329 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQ SV E L PR +D+++ S+T AKVTLEPLERGFGHTLG+ALRRILLSSMPGCAVTE + Sbjct: 1 MQRSVHELLTPRTIDVKESSATRAKVTLEPLERGFGHTLGSALRRILLSSMPGCAVTEAQ 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS EGVQED++EILLNLKG+AV++ G+D+ LTL+K G G VTA DI D D Sbjct: 61 IDGVLHEYSAIEGVQEDVIEILLNLKGVAVKMNGRDDAELTLSKKGPGVVTAGDIKLDHD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEI P+HVICHL+ EN ++MR++V RGRGY PA R E++ R IGRL +DA +SPV Sbjct: 121 VEIANPEHVICHLS-ENGEVNMRLRVARGRGYEPADQRGLDEDETRAIGRLQLDATFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 R+AY VE+ARVEQRTDLDKLVI++ETNGTIDPEEAIRRAATIL +QL FVD ++P Sbjct: 180 RRVAYAVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLAVFVDFDHEKEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E EE+ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKSL Sbjct: 240 ERVEEEEEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 TEIKDVLASRGLSLGMRL+NWPPAS+ + Sbjct: 300 TEIKDVLASRGLSLGMRLDNWPPASLRGD 328 >UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 Tax=Bacteria RepID=RPOA_ACIBL Length = 368 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 135/317 (42%), Positives = 203/317 (64%), Gaps = 8/317 (2%) Query: 8 FLKPRLV--DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 F KP+ + D E ++ + +P ERGFG T+GNALRR+LLSS+ G A+T V+I+GVL Sbjct: 6 FQKPKRLAFDSESLTDKYGHFWAQPFERGFGTTIGNALRRVLLSSIEGAAITAVKIEGVL 65 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE+ + GV ED +I+LNLK + R+ G + L G VT+ I D DVEI+ Sbjct: 66 HEFQSIPGVVEDATDIILNLKQIPFRLNGDAPKAIYLRAEQPGIVTSGMIETDADVEILD 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I ++ E + M +++++GRGYV A +++ +G + +D+ +SPV + Y Sbjct: 126 KDVYIATIS-EGGKLDMEMRLKKGRGYVSADKNF---DEDLGLGFIPIDSVHSPVRKCNY 181 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQPEVKE 244 +VEAAR+ Q TD DKL IE+ TNG+++P +A+ AA +L + + F++ ++ ++ Sbjct: 182 SVEAARLGQITDYDKLSIELWTNGSVNPADALGLAAKLLKDHMNIFINFEEEIEASHAED 241 Query: 245 EKPEF-DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 KPE + L R V++LEL+VRS NCLK I IG+LVQ+TE E+LKT N G+KSL EI Sbjct: 242 RKPEIRNENLNRSVEELELSVRSYNCLKNANIQTIGELVQKTEAEMLKTKNFGRKSLNEI 301 Query: 304 KDVLASRGLSLGMRLEN 320 K++LAS GLSLGM+++ Sbjct: 302 KEILASMGLSLGMKIDE 318 >UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 Tax=Bacteria RepID=RPOA_ANATD Length = 324 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 145/314 (46%), Positives = 202/314 (64%), Gaps = 8/314 (2%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + EF KP + + + + + +EPLERG+G T+GNALRR LLSS+PG AVT V+IDG Sbjct: 1 MIEFQKPTIRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV ED+ EI+LNLKGLA+++ ++ + G V A DI D D+EI Sbjct: 61 VLHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKVMYIEAQGECEVKAKDIKADADIEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 P H I L +++A + M I V +G+GYV A +++ +PIG + VD+ Y+PV ++ Sbjct: 121 CNPDHHIATL-NQDARLFMEITVNQGKGYVLAE---RNKQPNQPIGVIPVDSIYTPVVKV 176 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR---QP 240 Y VE RV Q TD DKL +E+ TNGTI P+EA+ AA IL E F DL ++ + Sbjct: 177 NYKVENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFNLFTDLSNIPTKIET 236 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 VK+E P+ + +L +++LEL+VRS NCLK I+ + DLV +TE E++K NLGKKSL Sbjct: 237 VVKQEPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSL 296 Query: 301 TEIKDVLASRGLSL 314 E+ L S GLSL Sbjct: 297 EEVIQKLHSLGLSL 310 >UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 Tax=Proteobacteria RepID=RPOA_ROSDO Length = 338 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 156/327 (47%), Positives = 231/327 (70%), Gaps = 8/327 (2%) Query: 6 TEFLKPRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 E +KP+ +D++ + A VT EPLERGFG T+GNALRR+L+SS+ G A+T V+ID Sbjct: 7 AELIKPQQLDVKPGNDPARQATVTAEPLERGFGLTMGNALRRVLMSSLQGAAITSVQIDN 66 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+S+ GV+ED+ +I+LNLKG+++R++ + L+++ G G VTA DI+ +EI Sbjct: 67 VLHEFSSVAGVREDVTDIILNLKGVSIRMEVEGPKRLSISAKGPGVVTAGDISESAGIEI 126 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + HVICHL D+ A + M + V +G+GYV A ++ ++ PIG + +DA YSPV+++ Sbjct: 127 LNRDHVICHL-DDGADVYMELTVNQGKGYVSAEK---NKPEDAPIGLIPIDAIYSPVKKV 182 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 +Y+V+ R Q D DKL +++ET+G++ P++A+ AA IL +QL FV+ + Sbjct: 183 SYDVQPTREGQVLDYDKLTMKVETDGSLTPDDAVAFAARILQDQLGIFVNFEEPESASRA 242 Query: 244 EEKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 +E EF+P+LL+ VDDLEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL Sbjct: 243 DEDDGLEFNPLLLKKVDDLELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN 302 Query: 302 EIKDVLASRGLSLGMRLENWPPASIAD 328 EIK+VL+ GL LGM +E+WPP +I D Sbjct: 303 EIKEVLSGMGLHLGMDVEDWPPDNIED 329 >UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390 Tax=Bacteria RepID=C9R8G2_AMMDK Length = 319 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 147/315 (46%), Positives = 203/315 (64%), Gaps = 10/315 (3%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + KPR+ VD + + + +EPL RG+G TLGNALRR+LLSS+PG AVT V+I+G Sbjct: 1 MLGIEKPRVSVDSLAPTGDYGRFVIEPLVRGYGITLGNALRRVLLSSIPGAAVTMVKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV+ED++EI+LNL+GL +R+ +E IL + +G V A DI D DVEI Sbjct: 61 VLHEFSTLPGVREDVVEIILNLRGLKIRMHTDEERILRIEAAGEREVRARDIIADADVEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P H I L E + M + V+RGRGYVPA + H + IG + VDA +SPV+++ Sbjct: 121 LNPDHYIASLAPEG-RLFMEMTVRRGRGYVPADRQRH----DHVIGAIPVDADFSPVKKV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQ 239 Y VE A V Q D D+L++E+ TNG + PEEA+ AA IL E + L + + Sbjct: 176 NYRVENAWVGQNADYDRLILEVWTNGCVRPEEAVSLAARILCEHFQLLTGLSTSTGHLEK 235 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 V++E+ + +L P+++L+L+VRS NCLK I+ I DL QRTE E++K NLGKKS Sbjct: 236 IMVEKEEDNKNRLLEMPIEELDLSVRSYNCLKRAGINTILDLTQRTEEEMMKVRNLGKKS 295 Query: 300 LTEIKDVLASRGLSL 314 L E+K LA GLSL Sbjct: 296 LEEVKQKLAELGLSL 310 >UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 Tax=Bacteria RepID=RPOA_SACEN Length = 359 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 143/324 (44%), Positives = 198/324 (61%), Gaps = 8/324 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +P L + E V+ T ++ +EPLE GFG+TLGN+LRR LLSS+PG AVT + IDGVLHE+ Sbjct: 5 QRPSLAE-EAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVLHEF 63 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 +T GV+ED+ +++LNLK L V + + V + L K G G VTAADI V + P Sbjct: 64 TTIPGVKEDVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHNPDL 123 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I L + + + + V+RGRGYVPA + +++ IGR+ VD+ YSPV ++ Y VE Sbjct: 124 HIATLNGKG-KLEIELVVERGRGYVPA---VQNKQTGAEIGRIPVDSIYSPVLKVTYKVE 179 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-DVRQPEVKEEKP 247 A RVEQRTD DKL++++ET +I P +A+ A L E +L D E+ Sbjct: 180 ATRVEQRTDFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPA 239 Query: 248 EFDPI--LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 E D I P++DL+LTVRS NCLK E IH +G+LV R+E +LL N G KS+ E+K Sbjct: 240 EADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKL 299 Query: 306 VLASRGLSLGMRLENWPPASIADE 329 L GLSL + P++ A E Sbjct: 300 KLVGLGLSLKDSPPGFDPSAAAAE 323 >UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Acidithiobacillus RepID=B5EM99_ACIF5 Length = 339 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 177/324 (54%), Positives = 235/324 (72%), Gaps = 5/324 (1%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 V E L+P+ VD+E +S+ A++ L PLERGFGHTLG+ LRR+LLSS+ G AVTEVEI+GV Sbjct: 4 VGELLRPQGVDVEVISARRARLALGPLERGFGHTLGSGLRRVLLSSLKGAAVTEVEIEGV 63 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHEYS+ EGVQED+++ILLNLK LAVR G+ + ++TL K G G +T ADI + +E+ Sbjct: 64 LHEYSSIEGVQEDVVDILLNLKMLAVRAHGRGDAVVTLRKRGPGQMTGADIVSEHGIEVA 123 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ VI LT + + +R+++ GRGY A+TR S E IG + +DA +SPV R++ Sbjct: 124 NPEQVIATLT-RDVELVLRLRIDEGRGYDAAATRRQSHEKR--IGVMALDASFSPVLRVS 180 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y VE ARVEQRTDLD+L++++ETNG +DP A++ AA I QL PE + Sbjct: 181 YLVENARVEQRTDLDRLILDVETNGVVDPVWAVQEAARIFRSQLGVLAGAETREIPEASQ 240 Query: 245 EK--PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + P+L+RPVDDLELTVRSANCLKAE I YIGDLVQ++E ELLK PNLG+KSL E Sbjct: 241 VQVSQSLTPLLIRPVDDLELTVRSANCLKAEDIFYIGDLVQKSEQELLKAPNLGRKSLNE 300 Query: 303 IKDVLASRGLSLGMRLENWPPASI 326 IK+VL + GL+LGMRL++WPP ++ Sbjct: 301 IKEVLVAHGLTLGMRLDSWPPENL 324 >UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Tax=Desulfovibrionales RepID=RPOA_DESMR Length = 347 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 139/321 (43%), Positives = 203/321 (63%), Gaps = 8/321 (2%) Query: 6 TEFLKPRLVDIE-QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 TE +KP ++D + + T + EPLERGFG TLGNALRR+LLSS+ G A+ I+GV Sbjct: 16 TELVKPEVLDKDPSSTETFGRFVCEPLERGFGTTLGNALRRVLLSSLQGAAIVAARIEGV 75 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ST GV ED+ EI+LNLK + + + + LTL G V A+ I + +V ++ Sbjct: 76 QHEFSTIPGVIEDVTEIILNLKQVRLAMATDEPQRLTLLAKEKGEVRASAIQGNHNVSVL 135 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 +I L+ E+ + ++V+ G+GYVPA E E IG +L+DA +SPV+++A Sbjct: 136 SEDVLIATLS-EDRDFRIDLEVRMGKGYVPADMH---EGLESEIGLILLDASFSPVKKVA 191 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y +E ARV Q T+ DKLV+E+ T+G+I PE+AI +A IL +QL F++ + K Sbjct: 192 YTIEQARVGQMTNYDKLVLEVTTDGSIAPEDAISYSAKILKDQLTVFINFDEKESEAEKN 251 Query: 245 EKP---EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + E +P L + +D+LEL+VR+ NCLK+ I +G+L+Q+TE E+LKT N GKKS Sbjct: 252 RRRDDIELNPSLFKSIDELELSVRATNCLKSANIQTVGELMQKTEHEMLKTKNFGKKSFE 311 Query: 302 EIKDVLASRGLSLGMRLENWP 322 EI+ VL GL GMR+EN+ Sbjct: 312 EIRRVLEDMGLEFGMRIENFD 332 >UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 Tax=Bacteria RepID=RPOA_DESDG Length = 348 Score = 386 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 199/322 (61%), Gaps = 9/322 (2%) Query: 6 TEFLKPRLVD--IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +E +KP + E + + K EPLERG+G T+GNA+RR+LL+S+ G A V+I G Sbjct: 16 SELVKPDQISRASESADTMYGKFVCEPLERGYGTTIGNAMRRVLLASLQGAAFVAVKISG 75 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE++T GV ED+ +I+LNLK + + + ++ L L+ + G V A DI + V + Sbjct: 76 VQHEFTTIPGVLEDVTDIVLNLKQVRLAMDTEEPQHLELHVNKSGEVKAGDIKCNQHVMV 135 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + + LT E+ ++ ++V+ G+GYVPA E IG + +DA +SPV ++ Sbjct: 136 LNADQHLMTLT-EDVELTFELEVRMGKGYVPADMH---EGLSDEIGLIALDASFSPVRKV 191 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD---VRQP 240 AY VE ARV Q T+ DKL++E+ T+G+I PE+AI +A I+ +Q+ F++ + ++ Sbjct: 192 AYTVEQARVGQMTNYDKLILEVWTDGSISPEDAIAYSAKIIKDQISVFINFDERISEQEN 251 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E + + + L + +D+LEL+VR+ NCLK+ I +G+LVQ++E E+LKT N G+KSL Sbjct: 252 EGRSSASDVNENLFKGIDELELSVRATNCLKSANISLVGELVQKSEGEMLKTKNFGRKSL 311 Query: 301 TEIKDVLASRGLSLGMRLENWP 322 EI+ VL L GM+++ + Sbjct: 312 DEIRRVLGEMSLDFGMKVDGFE 333 >UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPG1_9BACT Length = 335 Score = 385 bits (990), Expect = e-106, Method: Composition-based stats. Identities = 140/318 (44%), Positives = 213/318 (66%), Gaps = 8/318 (2%) Query: 7 EFLKPRLVD-IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E +KPR ++ + +V+ + + EP E+GFG T+GNALRR+LL+++ G AV V+IDGV Sbjct: 8 EIIKPRKIEAVGEVTDRYGEYVAEPYEKGFGITIGNALRRVLLATIEGTAVVGVKIDGVS 67 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 +E++T EGV ED+++IL+N+K L +++ + + + K+G GPVTA DIT D VEI+ Sbjct: 68 NEFATLEGVYEDVVDILMNIKMLDLKLHTHETRRVYIKKTGEGPVTAGDITGDTMVEILT 127 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P IC +TD N ++M VQRG GYVPA E+D I L VDA ++P++++ Y Sbjct: 128 PDQHICTITDPNKELNMEFVVQRGIGYVPAE---ELEKDYDEIDMLSVDAVFTPIKKVNY 184 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQPE 241 +V+ ARV Q TD D+L +E+ET+G+I+PE+AI AA I+ +Q+ F++ +V+Q E Sbjct: 185 HVDNARVGQSTDYDRLTLEVETDGSINPEDAIGFAAKIIKDQMNLFINFDEPVVEVKQDE 244 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + + + +L + +++LEL+VR+ NCLK I + +L +T+ E+LKT N G+KSL Sbjct: 245 EENQNDQLLDLLDKSIEELELSVRAYNCLKNANIKTLAELCMKTDAEMLKTKNFGRKSLE 304 Query: 302 EIKDVLASRGLSLGMRLE 319 EIK VL GLSLGM LE Sbjct: 305 EIKKVLQELGLSLGMDLE 322 >UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 Tax=cellular organisms RepID=RPOA_SYNJB Length = 335 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 176/300 (58%), Gaps = 9/300 (3%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 + + K L PLERG G T+GNALRR+LLS++ G AVT V I GV HE+ST GV+E Sbjct: 34 DDNGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVTHEFSTVPGVRE 93 Query: 77 DILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDE 136 D++EILLN+K L +R + + L G G VTA + DVE++ P+H I L E Sbjct: 94 DVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLA-E 152 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRT 196 A + M + RG GY +S+ I L +D+ + PV ++ Y VEAARV Q Sbjct: 153 GAILEMEFMIGRGHGYRAVD---YSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFL 209 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR- 255 + D+LV+E+ TNG++ P+EA+ +AA IL F L++V KP+ D + Sbjct: 210 EKDRLVLEIWTNGSLTPQEALSQAARILV---GLFAPLQEVSFDAPVPPKPDEDNQKNQI 266 Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-RGLSL 314 P+++L+L+VR+ NCLK I+ + DL+ TE +LL+ N G+KS E+ L + GL+L Sbjct: 267 PIEELQLSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKARFGLTL 326 >UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RPOA_DESAD Length = 346 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 141/320 (44%), Positives = 209/320 (65%), Gaps = 7/320 (2%) Query: 6 TEFLKP-RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 E +KP +LV + + + K EPLERGFG T+GN+LRR+LLSSM G A V+I+GV Sbjct: 16 AELVKPEQLVRDPKSNELYGKFICEPLERGFGTTIGNSLRRVLLSSMQGAAAVAVKIEGV 75 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE++T EGV ED+ EI+LN+K + + + LTL + G VTAADI + +V+++ Sbjct: 76 QHEFTTIEGVMEDVTEIVLNIKQIRFAMTTDEPQFLTLRVNKQGVVTAADIQENQNVKVL 135 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ +I L+ E + M +++ G+GYVPA E IG +++D+ +SP+ ++A Sbjct: 136 NPEQIIATLS-EKMDMEMTFEIRMGKGYVPADMH---EGLVNEIGHIILDSSFSPIRKVA 191 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV--RQPEV 242 Y+VE ARV Q T+ DKL+IE+ T+G++ PE+AI +A IL +QL F++ ++ Q E Sbjct: 192 YSVEQARVGQMTNYDKLIIEVFTDGSVTPEDAIAYSAKILKDQLSVFINFDEMGSEQEES 251 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 KE + +P L + +D+LEL+VR+ NCLKA I +G+LVQRTE +LKT N G+KSL E Sbjct: 252 KESDLDLNPNLFKSIDELELSVRATNCLKAANIRIVGELVQRTEQTMLKTKNFGRKSLDE 311 Query: 303 IKDVLASRGLSLGMRLENWP 322 I+ VL S L GM LE++ Sbjct: 312 IRRVLDSMELKFGMVLEDFD 331 >UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_SALRD Length = 328 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 134/327 (40%), Positives = 205/327 (62%), Gaps = 10/327 (3%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 P V +E+VS + + + PLERG+G T+GNALRR+LLSS+ G A+T V+IDGV HE Sbjct: 6 LQMPEGVHVEEVSDSEGQFVMGPLERGYGVTIGNALRRVLLSSLRGLAITAVKIDGVQHE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDGDVEIVKP 126 +ST GV ED+ +++LNLK + + E L LN G G TAADI + +++ P Sbjct: 66 FSTIPGVTEDVADLILNLKEVRFKADEMQEGHLHLNLEGPGNWTAADIDEATAEYDVLNP 125 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 + L E+A +++ ++V GRGYVP+ ++ ++ PIG + +D+ ++P++ + Y Sbjct: 126 DQHVATLA-EDAVVNVDLRVGYGRGYVPSE---ENKREDDPIGVIAIDSIFTPIKNVNYE 181 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-----RDVRQPE 241 V+ RV Q+ D ++L++++ET+G++ PEEAI + A+IL + + F+ L V + E Sbjct: 182 VKPTRVGQKIDYEELLLDVETDGSLTPEEAITQGASILRDHVSFFIQLEEEPEPVVEEQE 241 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 V EE +L +PVD+L+L+VRS NCLKA I IGDLV+R E E+LK N G+KSL Sbjct: 242 VDEEVKRIRELLAQPVDELDLSVRSHNCLKAANIKTIGDLVRREEDEMLKFRNFGRKSLQ 301 Query: 302 EIKDVLASRGLSLGMRLENWPPASIAD 328 E+ +VL RGL GM +E + A Sbjct: 302 ELVEVLDERGLQFGMDVEEYLEEKKAS 328 >UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 Tax=Firmicutes RepID=RPOA_DESHD Length = 315 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 135/314 (42%), Positives = 200/314 (63%), Gaps = 8/314 (2%) Query: 5 VTEFLKPRLVDIEQVSST-HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + E KP++ +E+ +AK +EPLERG+G TLGN+LRRILLSS+PG AVT V+I+G Sbjct: 1 MLEIEKPKIECVERTDDNSYAKFVVEPLERGYGITLGNSLRRILLSSLPGTAVTSVKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV ED+ +I+LNLK LA++ + +L L G G + A DI D D+EI Sbjct: 61 VLHEFSTVPGVLEDVTDIILNLKSLALKGHTDEPKVLRLEAEGEGVIKAGDIITDADIEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P I L D++ + M + +RGRGYV A +++ ++ IG + +D+ ++P+ ++ Sbjct: 121 LNPDLKIATL-DKDGRLFMEMTAERGRGYVSADK---NKKPDQAIGIIPIDSIFAPIYKV 176 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD---VRQP 240 Y VE RV TD DKL +E+ +NG+I PEEA AA IL+E L F+ L D + Sbjct: 177 NYTVEDTRVGMVTDYDKLTLEVWSNGSITPEEATSLAAKILSEHLRLFIGLTDKLNNVEI 236 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 V++E+ D IL ++DL+L+VRS NCLK I+ + +L Q+TE +++K NLG+KSL Sbjct: 237 MVEKEEEAKDKILEMTIEDLDLSVRSYNCLKRAGINSVEELTQKTEEDMIKVRNLGRKSL 296 Query: 301 TEIKDVLASRGLSL 314 E++ L GL Sbjct: 297 EEVESKLKELGLGF 310 >UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFF3_THET1 Length = 367 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 10/329 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 SV E P+ V+ ++ + + ++ PL G+G T+GNALRR+LLSS+ G A+T V+I+G Sbjct: 21 SVIELTTPK-VECIGIADNYGRFSISPLAPGYGLTIGNALRRVLLSSLEGAAITSVQIEG 79 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE+ GV+ED+ +I+LN+K + VR V L L +G VTAADI DV+I Sbjct: 80 ARHEFMALPGVKEDVTDIILNIKRIRVRSYSDRPVTLRLEATGPKVVTAADIRPHADVDI 139 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V I L E+A++SM++ VQ+GRGYVPA ++ D IGR+ VDA YSPV ++ Sbjct: 140 VSLDQPIATLDSEDATLSMQLTVQKGRGYVPAESQ-----DFFEIGRIPVDAIYSPVTKV 194 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF---VDLRDVRQP 240 Y VE RV QRTD D L+IE+ T+GTI P EA+ +AA+IL Q + + Sbjct: 195 NYVVERTRVGQRTDYDNLIIEIWTDGTIAPGEALSQAASILVGQFQIIAAYANAETSFGI 254 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E+ E + R +D+L L+ R+ N LK I +G ++ +T+ +LL N G KSL Sbjct: 255 ELPTETMSVPEVDNRSIDELGLSARTLNSLKRAHITTVGQVLSKTKDDLLSIRNFGDKSL 314 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 E++ L G L L + D+ Sbjct: 315 HELEAKLKEFGY-LPSDLPEGAIENAPDD 342 >UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EW63_9PROT Length = 325 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 157/324 (48%), Positives = 227/324 (70%), Gaps = 6/324 (1%) Query: 7 EFLKPRLVDIEQ-VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 + + PR + IE+ V AK+ EPLERG+G T+GN+LRR+LLSS+PG AVT V +DGV Sbjct: 2 QLINPRHISIEEKVPGRAAKIVFEPLERGYGTTIGNSLRRMLLSSLPGAAVTSVLMDGVA 61 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HEY + +GV+ED+++I+L+LK L +R++G + ++L G VTAADI + ++ Sbjct: 62 HEYDSIKGVREDVMDIILSLKELDLRMEGDEAATISLEIKGSAIVTAADIKCPAGLSVLN 121 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ ++ HL +++A + + V++GRGY PA+ R E DER +G LLVDA YSP+ R++ Sbjct: 122 PELILAHL-NDDAHLKIEAVVEKGRGYEPATDR---EVDERAVGSLLVDASYSPIRRVST 177 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR-QPEVKE 244 VEAARV QRT+ DKL++E+ETNG++ PEEA+ AA IL QL FVD +V E + Sbjct: 178 RVEAARVGQRTNYDKLIMEIETNGSLSPEEALNSAAKILEAQLAVFVDFENVSIVSEPEG 237 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 D +L++P++ L+L+VRS NCLK++ + +GDLVQR+E E+L+TPN G+KSL EIK Sbjct: 238 PDDTLDNLLIQPIEHLDLSVRSMNCLKSDDVFRVGDLVQRSEQEMLRTPNFGRKSLNEIK 297 Query: 305 DVLASRGLSLGMRLENWPPASIAD 328 +VL + GL LGM L NWPP A+ Sbjct: 298 EVLENMGLELGMDLPNWPPQEDAE 321 >UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Tax=Chloroflexi RepID=RPOA_HERA2 Length = 331 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 186/312 (59%), Gaps = 10/312 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + + P+L + + + + +EPL+ G+GHTLGNALRR+LLSS+PG AV +++IDG+ Sbjct: 1 MLDIAMPKL-ECVAAAENYGRFKIEPLDPGYGHTLGNALRRVLLSSIPGAAVIKIKIDGI 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+S +GV+ED EI+LN+KG+ +R + V + L+K+G G V A+DI +VEIV Sbjct: 60 FHEFSPIQGVREDATEIVLNVKGIRLRSYAERPVKMILSKTGPGVVRASDIECPSNVEIV 119 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P H I L +A + M + V+R RGY+PA R D PIG + VDA ++PV ++ Sbjct: 120 NPDHYIATLDSSDARLDMELTVERHRGYLPAENR-----DPVPIGEIPVDAIFTPVHKVN 174 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y VE R+ TD D+L++E+ T+GT+ P +A+ AA +L + D + + Sbjct: 175 YVVEHTRIGGMTDFDRLLLEIWTDGTVKPGDALSYAAQVLVQYSSIIADFNRFDDEQEQV 234 Query: 245 EKPEF----DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 I P++DL+L+ R+ NCLK I +G +++ E +LL NLG+KS+ Sbjct: 235 GDANGLVIPSEIYDMPIEDLDLSTRTYNCLKRADITKVGQVLEMDEKQLLAVRNLGQKSM 294 Query: 301 TEIKDVLASRGL 312 EI++ L R L Sbjct: 295 DEIREKLIERNL 306 >UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 Tax=Coriobacteriaceae RepID=C8W7X1_ATOPD Length = 313 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 138/316 (43%), Positives = 199/316 (62%), Gaps = 11/316 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 ++EF++P V ++++ + A+V++EPLERG+G TLGN+LRR+LLSS+ G AV ++IDGV Sbjct: 1 MSEFIRPN-VSVDEIGANVARVSVEPLERGYGDTLGNSLRRVLLSSLEGAAVEAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE++T EGV ED+ +I+LN+KGL R DE +++ G VT AD+ E+ Sbjct: 60 QHEFTTVEGVYEDVTDIVLNVKGLVFRNTNNSDEAEASISVDGPCTVTGADLDVPMGYEL 119 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V P IC L E A +SMR+++ GRGYV +E + PIG + VD+ +SPV R Sbjct: 120 VNPAQHICALA-EGAHLSMRLRIGNGRGYVSGED---NERENDPIGFIHVDSIFSPVRRC 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 A VE RV + TD D+LV+E+ETNG I P EA+ AA I+ + + AF+ L D + + + Sbjct: 176 AKAVEPCRVGRHTDYDRLVLEVETNGAISPREAVVEAANIINQHMSAFMGLTDFDETQEE 235 Query: 244 -----EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 + E D L + V+DL+L+VRS NCLK IH + LV +E +LL N G K Sbjct: 236 ASIFAKADVEDDSELEKQVEDLDLSVRSYNCLKRAGIHSVRQLVDFSENDLLNIRNFGVK 295 Query: 299 SLTEIKDVLASRGLSL 314 S+ E+K+ L S GLSL Sbjct: 296 SIEEVKEKLESMGLSL 311 >UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWA6_9BACT Length = 322 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 196/316 (62%), Gaps = 9/316 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 P+ + + S+ ++V +EP ERGFG T+GNALRR+LLSS+PG A+T + V HE+ Sbjct: 8 QMPKGLAVSHSSARSSRVVVEPFERGFGITVGNALRRVLLSSIPGVAITAIRAKNVFHEF 67 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 S GV ED+ +I+LNLK L ++ + E L L G V A+DI G VE++ P H Sbjct: 68 SNIPGVVEDVTDIILNLKSLRMKPLLQGEHWLHLKVKGPRIVKASDIDTVGAVEMMDPDH 127 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 VI L DE + M +K + GRGYVPA HS E +G + +DA ++P+ ++ Y VE Sbjct: 128 VIATL-DEGGHLDMDLKTEFGRGYVPAD---HSRSTETEVGIIPIDAIFTPINKVNYFVE 183 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-----DVRQPEVK 243 + RV + TD D+L+ E+ET+G+I P EA+ AA IL L+ FV D ++ Sbjct: 184 STRVGRITDYDRLIFEIETDGSITPGEALSEAAKILRTHLDLFVSSDLHLANDSSPLSLE 243 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + I+ + V++LEL+VR+ANCLK+ I IG+LV RTE ELL+T N GKKSL EI Sbjct: 244 SNSSKEETIMDKSVNELELSVRAANCLKSSDIKKIGELVIRTEDELLQTKNFGKKSLDEI 303 Query: 304 KDVLASRGLSLGMRLE 319 K+ L + GLSLGM L Sbjct: 304 KEALENIGLSLGMDLS 319 >UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Tax=Planctomycetales RepID=RPOA_RHOBA Length = 331 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 131/323 (40%), Positives = 196/323 (60%), Gaps = 11/323 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E VD + ++ T+ K + EP ERGFG ++GN++RR+LLSS+ G AVT+++I G H Sbjct: 11 ELPSSLEVDRDSLTQTYGKFSAEPFERGFGASIGNSMRRVLLSSLVGSAVTQIKIRGAQH 70 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 E++T GV ED+ +I+LN+K L V ++T+ ++ G VT AD+ D DVEI+ Sbjct: 71 EFTTIPGVLEDVTDIVLNVKSLIVNSNTDSTRVITVERNTAGVVTGADVQTDADVEIINK 130 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 HVIC LTD + M + V+ GRGYVP+ + IG + +DA +SP+ R+ Y Sbjct: 131 DHVICTLTD-DVPFMMEMVVETGRGYVPS---TEHSSVDHEIGIIPIDAVFSPIVRVRYE 186 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-------RQ 239 VEA RV Q+T+ D+L +E+ T+GTI+PE A+ AA IL + L FV R++ + Sbjct: 187 VEATRVGQKTNYDRLNLEIWTDGTINPEMALTEAAKILRKHLNPFVQYRELGPSIFSAAR 246 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + + + L + DL L+VR+ NCL++E I + DLVQRTE LL+ N G + Sbjct: 247 GGAGSPEAQLEAKLNMTLADLRLSVRANNCLESENIMTVRDLVQRTEDSLLEVRNFGDTT 306 Query: 300 LTEIKDVLASRGLSLGMRLENWP 322 L E+++ L+ GL LGMR+ N P Sbjct: 307 LNEVREKLSQYGLHLGMRVPNQP 329 >UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 Tax=Bacteria RepID=B5YG22_THEYD Length = 343 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 212/327 (64%), Gaps = 19/327 (5%) Query: 7 EFLKPRLVDI--EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 EF P+ V+ E ++ T+ K+ +EPLERG+G TLGN+LRR+LLSS+ G AV + I+ Sbjct: 6 EFQMPKKVEFDQESLTDTYGKLVIEPLERGYGITLGNSLRRVLLSSLDGVAVYAIRINDA 65 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHDGDVE 122 LHE+S+ +GV+EDIL+I+LN+K L + Q D+ I T+ G VTA I DG E Sbjct: 66 LHEFSSIKGVKEDILDIILNVKKLRFKYYAQDSDKKIATIKIKGPADVTAESIQTDGTYE 125 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 ++ IC L D++A + M + +++GRGYVP+ ++DE P+ + VDA +SPV++ Sbjct: 126 VLNKSQYICSL-DQDAQMEMVLYIRKGRGYVPSEAI---KDDELPVDAITVDAIFSPVKK 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE--AFVDLRDVRQP 240 + + VE RV + TD D+L++E+ T+G+I PE AI A++IL + E F +++ Sbjct: 182 VNFRVEKTRVGELTDYDRLILEIWTDGSITPERAISDASSILIKHFEYLIFFKEAELQNK 241 Query: 241 EVKEEKPE---------FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 E+ E P + +L+P++DLEL+VR+ NCLK+ I+ I +LVQRTE EL+K Sbjct: 242 EIHETVPNPEEDLNFDLLNENILKPIEDLELSVRAYNCLKSAGINTIAELVQRTEGELMK 301 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRL 318 T N G++SL EIK+VL + GL LGMR+ Sbjct: 302 TKNFGRRSLEEIKEVLTNMGLKLGMRI 328 >UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Tax=Coriobacteriaceae RepID=C7MLS1_CRYCD Length = 316 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 133/319 (41%), Positives = 199/319 (62%), Gaps = 14/319 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +TEF++P + E+VS T A+ ++PLERG+G+TLGN +RR+LL+S+ G A T ++IDGV Sbjct: 1 MTEFMRPT-ITTEEVSDTVARFVVDPLERGYGYTLGNTMRRVLLNSLDGAAATAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 HE++T EGV EDI +I+LN+KGL V +D E ++ G VT AD+ + Sbjct: 60 QHEFATAEGVIEDITDIVLNVKGLVFSVFAEDAIEATAHVSAEGPCTVTGADLQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P HVI + D + M I++ GRGYV A ++ +E PIG + VD+ +SPV R Sbjct: 120 LVNPDHVIATVAD-GGQLDMTIRIGVGRGYVVAE---RNKRNEDPIGIIHVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 A +V RV Q TD DKL++E+ET+G++ P +A+ +AA I+ + + AF+ L + + E Sbjct: 176 CALSVTDTRVGQSTDYDKLILEVETDGSLTPTDAVCQAANIVTQYMGAFLSLNESEEEEE 235 Query: 243 KEEK-------PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 E E + L + ++DL+L+VRS NCLK IH + LV+ +E +LL N Sbjct: 236 GEVPSIFAPEGEETNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEYSENDLLNIRNF 295 Query: 296 GKKSLTEIKDVLASRGLSL 314 G KS+ E+KD L S GL+L Sbjct: 296 GAKSIEEVKDKLISMGLNL 314 >UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DVZ0_METI4 Length = 337 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 134/323 (41%), Positives = 206/323 (63%), Gaps = 12/323 (3%) Query: 5 VTEFLKPRLVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + + PR + ++ +ST K +EP E G+GHTLGN+LRRILLSS+ G A++ V+I+ Sbjct: 5 LGRYEMPRSIVKDETVSNSTFGKYIIEPFESGYGHTLGNSLRRILLSSLEGAAISSVKIE 64 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 GV+HE++T EGV ED+++I+LNLK + +++ + + ++ G VTA DI D VE Sbjct: 65 GVMHEFTTMEGVVEDVVDIVLNLKKVLIKMPDRQTRVFRVDVFKEGAVTAGDIQVDPGVE 124 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 IV P+ +IC L D+ + M ++V+ GRG++ ++++ ++ IG + +D +SPV Sbjct: 125 IVNPEQLICTL-DKKQRLLMELEVKVGRGFLLGE---YNKKQDQSIGVIPIDCLFSPVRH 180 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR------D 236 + Y VE RV QRTD D+L+ E+ T+G I P+EA+ ++A IL L+ FV + Sbjct: 181 VKYTVENTRVGQRTDYDRLIFEIWTDGRIGPDEALVQSAAILQHHLDIFVQYGKEPVEFE 240 Query: 237 VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 +P +KEE+ IL V+++EL+VR+ANCL I +G L +TE E+LK N G Sbjct: 241 KPKPPIKEEENRLRKILNMSVNEIELSVRAANCLNNANITTVGQLAMKTEAEMLKYRNFG 300 Query: 297 KKSLTEIKDVLASRGLSLGMRLE 319 KKSL EIK+ LAS GLSLGM+ + Sbjct: 301 KKSLNEIKEKLASLGLSLGMKFD 323 >UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Tax=Bacteria RepID=RPOA_DESAH Length = 340 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 139/324 (42%), Positives = 212/324 (65%), Gaps = 11/324 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E + P V + +ST+ K EPLE+G+G T+GN+LRRI+LSS+ G A+ V+ LH Sbjct: 13 EIIMPEKVAV-TTTSTYGKFVCEPLEKGYGITIGNSLRRIILSSLYGAAIVSVKFSEALH 71 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH-DGDVEIVK 125 EYS V+ED+ EI++NLK + +++ + ILT+N G VTAADI DG VEI+ Sbjct: 72 EYSVVSDVREDVSEIIMNLKEVKLKLDDPGDKILTINVKGEKFVTAADIISGDGRVEILN 131 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ I ++ + + M + V+ G+GY A++ +++ E P+G + +D+ +SP++R+ Y Sbjct: 132 PEQHIATVS-KGGELMMTMLVKTGKGYALAAS---NKDPEAPVGTIPIDSVFSPIKRVKY 187 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245 V A+R+ Q+TD DKL +E+ T+G++ PE+++ AA IL EQ+ F++ + +PE+ E+ Sbjct: 188 VVGASRIGQKTDYDKLTMEIWTDGSVTPEDSVAYAAKILKEQMNPFINFDEDIEPELVEK 247 Query: 246 KPE-----FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 + E F+ L R VD+LEL+VRS+NCLK I I LVQ+T+ E+LKT N G+KSL Sbjct: 248 EHEGAAKNFNENLYRSVDELELSVRSSNCLKNAQILKIYQLVQKTDNEMLKTKNFGRKSL 307 Query: 301 TEIKDVLASRGLSLGMRLENWPPA 324 EIK+VL S LSLGM LE + P Sbjct: 308 NEIKEVLTSMDLSLGMDLEGFEPP 331 >UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 Tax=Bacteria RepID=B2UL53_AKKM8 Length = 374 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 192/324 (59%), Gaps = 13/324 (4%) Query: 5 VTEFLKP-RLVDIEQVSS-THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + F P RL IE + H EP E G+GHTLGN+LRR+LL S+ G A+T V I Sbjct: 17 LARFEVPSRLEKIEDPNDANHLTFVAEPFENGYGHTLGNSLRRVLLGSLEGAAITSVRIA 76 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G HE+S+ GV ED+ EI+LNLK + + GK+ +L+L G VTAADI D + Sbjct: 77 GAQHEFSSLPGVVEDVTEIVLNLKKVKFKHNGKEPRLLSLRVHKQGVVTAADIADDTVYQ 136 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P +IC L D++ +V+ GRG+ +T ++ + PIG + +D+ +SPV R Sbjct: 137 VVNPDQIICTL-DQDTMFECEFQVRVGRGF---ATGDENKVPDMPIGVIPIDSIFSPVTR 192 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 + Y+V+ RV Q TD DKL++E+ T+G I P +A+ +A+ IL L+ FV+ D + Sbjct: 193 VKYSVQNTRVGQMTDYDKLILEVWTDGRIAPADAMLQASAILRHHLDVFVNYDDKQVNFE 252 Query: 243 K-------EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + EE +L V+++EL+VR+ANCL I +G L ++E E+LK N Sbjct: 253 EAPSAVQDEETARLRKLLNMSVNEIELSVRAANCLNNANITTVGQLAMKSESEMLKYRNF 312 Query: 296 GKKSLTEIKDVLASRGLSLGMRLE 319 GKKSL EIKD L GLSLG++++ Sbjct: 313 GKKSLNEIKDKLLELGLSLGVQVD 336 >UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED1 Length = 333 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 135/338 (39%), Positives = 190/338 (56%), Gaps = 30/338 (8%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + +F PR + E V T+EPL+RGFG+T GN+LRR+LLSS+ G AVT V I+GV Sbjct: 1 MLDFQVPR-ITTETVEENRGSFTIEPLDRGFGYTFGNSLRRVLLSSLAGAAVTSVRIEGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDVEI 123 HE+ST GV+ED+ +I+LNLKG+ R+ E+ L +G G +TA DI VEI Sbjct: 60 AHEFSTIPGVKEDVTDIVLNLKGIVCRMHSDATEIEAPLVVTGPGDITAKDIDLPSGVEI 119 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P I L ++ + + + + RGRGY PA ++ ++PIG + +D+ +SPV R+ Sbjct: 120 LNPDAHIATL-EKKTKLEVYLTIGRGRGYRPAE---ENKSPDQPIGVIPIDSIFSPVRRV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---- 239 AY VE ARV Q+TD DKL +++ET+G+IDP A+R AA IL QL F D V + Sbjct: 176 AYAVEQARVGQKTDYDKLTLDIETDGSIDPHAALREAAEILISQLAIFTDADRVIELRDT 235 Query: 240 --------------------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIG 279 + + +++LEL VRS NCLK I +G Sbjct: 236 GGLGALEPGLAGGGVGGVGGHGAGPGGRPANAMDDILIEELELGVRSYNCLKRAGIQTVG 295 Query: 280 DLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 DL+ +TE EL PN GKKS+ E+ + L RGL L Sbjct: 296 DLISKTENELNAIPNFGKKSIDEVIETLEGRGLHLRQD 333 >UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RPOA_RUBXD Length = 313 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 182/308 (59%), Gaps = 6/308 (1%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + P +E+ H EPL RG GHTLGNALRR++LS +PG AVT++ I+GV HE+ Sbjct: 5 VAPPRFRVEEEDERHGIFVAEPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEF 64 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 ST EGV+ED+++I+LN+K L R++ + + L ++K G G V +DI DVE+V P Sbjct: 65 STIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDA 124 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I L+ E + M + V+RG+GYVPA ++ D PIG + VD+ +SPVE++ Y V Sbjct: 125 YIASLS-EGGHLDMTLTVERGQGYVPAE---QNKSDADPIGVIAVDSLFSPVEKVQYRVS 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 R R DLD L +E+ T+G + P EA+R A+ L + F + + + Sbjct: 181 ETRAGARVDLDALTLEVFTDGRLGPREALREASRKLIDFFGLFAEGYQGAGAAEEPGRSG 240 Query: 249 FDPI--LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 P+ RP++DLELTVRS NCLK E + IG L TE EL+ NLG KS+ EI+ Sbjct: 241 GRPVITDERPIEDLELTVRSYNCLKREGVDTIGQLATMTEEELMNIRNLGMKSVDEIRSK 300 Query: 307 LASRGLSL 314 L G +L Sbjct: 301 LEEYGYTL 308 >UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_PELLD Length = 328 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 122/327 (37%), Positives = 195/327 (59%), Gaps = 14/327 (4%) Query: 5 VTEFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + + P +++++ + + + +PLERG+G TLGN +RR+LL+S+PG A+T +++D Sbjct: 2 IYQMQMPAKIEVDEATHTDQYGRFIAQPLERGYGVTLGNMMRRVLLASLPGTAITGIKVD 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDGDV 121 GV HE+S+ EGV+ED+ EI+LNLK + + K TL+ G TA DI +G+ Sbjct: 62 GVFHEFSSIEGVREDVPEIVLNLKKVRFKSTCKRSCKTTLSIVGPKDFTAGDIVAQEGEF 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 E++ I + +E +++++ + + RGRGY PA S D PIG + +DA Y+P+ Sbjct: 122 EVLNKDLYIATV-NEGSTLNIDVYIGRGRGYTPAE---ESRPDSMPIGYIAIDAIYTPIR 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 + + VE RV QRTD +K+V+++ET+G+I P+++I A I+ E + F + + Sbjct: 178 NVKFAVENTRVGQRTDYEKMVLDVETDGSITPDDSISLAGRIINEHVTFFANFSPTEEEF 237 Query: 242 VKEEKPEFDP-------ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 +EE + D +L ++DL+L+VRS NCL+ I IGDLV R E ELL N Sbjct: 238 TEEEYKQQDDEFETMRRLLNTKIEDLDLSVRSHNCLRLAEIDTIGDLVSRKEDELLNYKN 297 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLENW 321 GKKSLTE+K+ L L GM + + Sbjct: 298 FGKKSLTELKEQLEKFELKFGMDITRY 324 >UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N3_SPHTD Length = 340 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 183/317 (57%), Gaps = 8/317 (2%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + E +PR V + + +EPLE G+G T+GNALRRILL S+PG A+ V I V Sbjct: 1 MLEIARPR-VQQTHAGVNYGRFEIEPLEPGYGITIGNALRRILLRSLPGTAIVRVRIADV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVE 122 HE+ST EGV+ED+ EI+LNLK + ++ + E +L G G V A DI GDVE Sbjct: 60 WHEFSTIEGVREDVTEIVLNLKRVRLKALTESFREGRASLYAQGEGVVRAGDIDWPGDVE 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P+HVI L +++A + M + + RGRGY PA T+ + IG + VDA ++P+E+ Sbjct: 120 VVNPEHVIATLDNDDARLEMDLVIARGRGYQPAETQ-----EIYTIGEIPVDAIFTPIEK 174 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 + Y VE RV Q TD D+L+IE+ T+GTI+P +A+ AA IL + D Sbjct: 175 VNYVVEHTRVGQMTDYDRLIIEIITDGTIEPADALSEAAQILVDHARLIADFNREPSEPE 234 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 +EE + RP+ +L L+ R N L++ I +G ++ + +LL N G +SL E Sbjct: 235 EEEDKTPSIVDNRPLAELGLSPRVLNALRSRQIERVGQVLSLPQEQLLSIRNFGPRSLQE 294 Query: 303 IKDVLASRGLSLGMRLE 319 +++ LA G +L M E Sbjct: 295 LRERLAEHGYTLAMDAE 311 >UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Slackia RepID=C7N7V0_SLAHD Length = 316 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 133/319 (41%), Positives = 197/319 (61%), Gaps = 14/319 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + EF++P V E+VS T A+ +EPLERGFG+TLGN +RR+LLSS+ G T ++I+GV Sbjct: 1 MAEFMRPT-VTTEEVSDTDARFVVEPLERGFGYTLGNCMRRVLLSSLDGARATAIQIEGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 HE++T EGV ED+ +I+LN+KGL +D E T++ G VT ADI + Sbjct: 60 QHEFTTAEGVIEDVTDIVLNVKGLVFAALTEDYTEATATISVEGPCTVTGADIQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 ++ P+HVI + D +++M I++ GRGYV A ++ E PIG + VD+ +SPV R Sbjct: 120 LINPEHVIATVAD-GGTLNMSIRIGVGRGYVSAE---RNKRTEDPIGIIPVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 V RV QRTD D+L++E+ET+G+I P EA+ RAA I+ + + AF+ L D+ + Sbjct: 176 CTLAVNDTRVGQRTDFDQLLLEVETDGSIAPNEAVCRAANIINQYMGAFLTLADITDEDE 235 Query: 243 KEEK-------PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + E + L + ++DL+L+VRS NCLK IH + LV+ +E +LL N Sbjct: 236 GDIPSIFATEGQESNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEFSENDLLNIRNF 295 Query: 296 GKKSLTEIKDVLASRGLSL 314 G KS+ E+KD L S L+L Sbjct: 296 GAKSIEEVKDKLISMDLNL 314 >UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F5_9FIRM Length = 321 Score = 365 bits (938), Expect = e-99, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 187/316 (59%), Gaps = 7/316 (2%) Query: 5 VTEFLKPR-LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F + + V S + K +EPLERGFG TLGNALRR+LLSS+PG AV ++++G Sbjct: 3 MQKFERAKFEVKEYVESDHYGKFVVEPLERGFGTTLGNALRRVLLSSLPGAAVYSIKVEG 62 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE+++ GV+ED+ ++LN+K L +++ + L + G VTA DI VE+ Sbjct: 63 VYHEFTSIPGVEEDVTMMILNIKNLIMKIDDDESYTLRIAAKGPMTVTAGDIICPTGVEV 122 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPAS-TRIHSEEDERPIGRLLVDACYSPVER 182 + I HL +E A++ M +K + GRGY+ A + + + IG + D+ Y+P++R Sbjct: 123 LNKDLEIAHL-EEGATLEMELKARNGRGYISADGNKALYQGSSQGIGTVYTDSIYTPIDR 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV---RQ 239 I+YNVE RV Q D+L+ E+ TNG+I P+ ++ + IL + L+ + + + Sbjct: 182 ISYNVEPTRVGQDAKYDRLIFEIWTNGSITPQMSLALGSKILIDHLDLLTHVNESVADME 241 Query: 240 PEVKEEKPEF-DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 +K+ E + ++DL+L+VRS NCLK I + +L QR+E E+++ NLGKK Sbjct: 242 SVMKDVNGESPKNMQSMAIEDLDLSVRSYNCLKRAGIQTVEELTQRSEEEMMRVRNLGKK 301 Query: 299 SLTEIKDVLASRGLSL 314 SL E+KD + GLS Sbjct: 302 SLKEVKDKIYELGLSF 317 >UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 Tax=Proteobacteria RepID=RPOA_EHRRW Length = 374 Score = 365 bits (938), Expect = e-99, Method: Composition-based stats. Identities = 134/330 (40%), Positives = 211/330 (63%), Gaps = 9/330 (2%) Query: 7 EFLKPRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + KP + + + A + +EPLE GF TLGNALRR+++SS+ G AV VEI+ V Sbjct: 38 KLTKPSSIKVVNHGNALNKADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYGVEIENV 97 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHE+++ GV+ED+ +ILLN+ + +++ G D +L+L G V + I D I+ Sbjct: 98 LHEFTSISGVREDVTDILLNISMIRLKLSGMDNKVLSLKVKGPCEVRSGMIADTPDCTIL 157 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE---DERPIGRLLVDACYSPVE 181 +IC L D++ ++++ V G+GYVPA R + ++ P+ + +A YSP++ Sbjct: 158 NKDLLICTL-DQDVDFNIKMYVNSGKGYVPAVKRKSINKFGLNDVPVNFIATNALYSPIK 216 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 + ++ VE++R+ Q TD D+L++ +ET+ +I P+EA+ AA IL +Q + F++ + +P Sbjct: 217 KASFRVESSRIGQFTDYDRLIMSVETDHSILPDEAVALAARILQDQFQQFINFDETDEPH 276 Query: 242 VKEEKPE---FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 K + + +D LLR VD+LEL+VRS NCLK + I YIGDLVQ+TE ++L+TPN G+K Sbjct: 277 QKVDTKDVLPYDSNLLRKVDELELSVRSYNCLKNDNITYIGDLVQKTESDMLRTPNFGRK 336 Query: 299 SLTEIKDVLASRGLSLGMRLENWPPASIAD 328 SL EI ++LAS L LGM++ NWPP SI Sbjct: 337 SLNEINELLASMNLHLGMKIANWPPESIES 366 >UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Tax=Aquificaceae RepID=RPOA_HYDS0 Length = 319 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 190/315 (60%), Gaps = 5/315 (1%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + EF+ P + E+ + + +EPLERG+G T+GNALRR+LLSS+ G A+T V+I+GV Sbjct: 1 MKEFIFPMKIYWEEKDKNYGRFVVEPLERGYGTTIGNALRRVLLSSIYGSAITAVKIEGV 60 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ST EGVQED+L+I+ NLK + ++ D IL L K+ G V A+DI +V I+ Sbjct: 61 QHEFSTIEGVQEDVLQIIANLKNVRFDLKDSDLEILYLEKNAPGVVLASDIKTPPNVTII 120 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 I + N ++ M I+++RG+GYV + E G +++DA +SP++ A Sbjct: 121 NKDAYIATINSANTTLKMEIRIERGKGYVMSDEM----EQIGEAGWVVLDADFSPIKVAA 176 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-DVRQPEVK 243 + VEA RV RTD DKL E+ TNG + P+ AI++A ++ + + ++ +V Sbjct: 177 FRVEATRVGDRTDYDKLTFELTTNGVVSPDTAIQQAVELIVKHMNMLTNISYEVPTLPEP 236 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 E L +++L+++ R+ N LK + IG+LVQ TE EL + N+G+K+LTEI Sbjct: 237 MPPDELMEKLTFSIEELDISQRALNSLKRIGVTTIGELVQLTEDELKSSKNIGRKALTEI 296 Query: 304 KDVLASRGLSLGMRL 318 K+ L + G SLGM + Sbjct: 297 KEALKNMGFSLGMNI 311 >UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Dictyoglomus RepID=B5YDX0_DICT6 Length = 324 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 126/304 (41%), Positives = 193/304 (63%), Gaps = 8/304 (2%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 V +E+ S + + +EPLERG+G T+GNALRRILLSS+ G AV V+IDGV HE G Sbjct: 8 VIVEKRSEDYGRFVIEPLERGYGWTIGNALRRILLSSIEGAAVVSVKIDGVRHELEVLPG 67 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 ++E+ILE+L+NLK L V+++ + IL ++ G VTAAD +V+IV P VI L Sbjct: 68 LKEEILEVLMNLKKLVVKIEDNNSHILEIDTRGPKVVTAADFIVPSNVKIVNPDLVIATL 127 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 E+ M ++V++G+GYV A +++ PIG L++D+ +SPV++++Y VE RV Sbjct: 128 V-EDMPFHMEVEVKKGKGYVSAE---ENKDQNYPIGVLVLDSIFSPVKKVSYTVEKTRVG 183 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE---FD 250 +RTDLD+L++E+ TNG+I PEEA R A+ IL E ++ ++ + P + + + Sbjct: 184 RRTDLDRLILEIWTNGSISPEEAFREASRILMEYFR-LLNEKEFQLPYEEVKPENTYLEE 242 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 ++DL L+ R+ N L+ IH I DL+ +T EL+K N G+KSL E+++ L + Sbjct: 243 EKKGLTLEDLGLSTRAYNSLRHAGIHTIEDLLSKTREELMKIKNFGQKSLQELEEKLREK 302 Query: 311 GLSL 314 GLSL Sbjct: 303 GLSL 306 >UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 Tax=Bacteria RepID=RPOA_FLAPJ Length = 330 Score = 356 bits (915), Expect = 4e-97, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 193/328 (58%), Gaps = 14/328 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ F KP V + + K PLE G+G T+GNALRR+LLS++ G A+T + I+G Sbjct: 2 ALFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSIRIEG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADI-THDGD 120 V HE+ST GV ED+ EI+L+LK + + ++ D +T+ SG +TA D + Sbjct: 62 VDHEFSTIPGVVEDVTEIILSLKQVRFKRQIEDIDNESVTIAISGKNQITAGDFQKYISG 121 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 +++ P+ VIC+L D + +M + +++GRGYVPA +++ IG + D+ ++PV Sbjct: 122 FQVLNPELVICNL-DSKVNFNMEMTIEKGRGYVPAE---ENKKQNAAIGTIFTDSIFTPV 177 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL------ 234 + + Y +E RVEQ+TD +KLV E++T+G+I+P++A+ AA +L F D Sbjct: 178 KNVKYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEA 237 Query: 235 -RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + EE +L + D++L+VR+ NCLKA + +GDLV + +L+K Sbjct: 238 DEIAQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFR 297 Query: 294 NLGKKSLTEIKDVLASRGLSLGMRLENW 321 N GKKSLTE+ +++A + L+ GM L + Sbjct: 298 NFGKKSLTELDELVAIKNLTFGMDLAKY 325 >UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 Tax=Bacteria RepID=RPOA_ORITB Length = 342 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 140/328 (42%), Positives = 214/328 (65%), Gaps = 9/328 (2%) Query: 6 TEFLKPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +KP V E + + +EPLERG G TLGN+LRR+LLSS+ G A+T ++I G Sbjct: 10 SSLIKPTKVQYEAVDNNPNIKTMVVEPLERGLGLTLGNSLRRVLLSSLRGAAITSIKIPG 69 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD--GDV 121 V HE S GV+ED+ +I+LN++ + V++ + L L +G VTA IT DV Sbjct: 70 VEHELSPVSGVKEDLTDIILNIRDVIVKMDSVQKCNLRLEVTGPAVVTAGMITVTDKQDV 129 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ PQHVIC+L+ + ++ M + ++G+GYVP S +S+ PIG + +DA ++PV Sbjct: 130 TILNPQHVICNLS-KGFNLEMDLICEQGKGYVPTSCLHNSDS---PIGAIHLDALFNPVR 185 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 R++Y VE + V Q T+ DKL+I +ETNG ++P+ A+ AA IL +QL+ F++ ++V + + Sbjct: 186 RVSYKVENSMVGQMTNYDKLIITVETNGVVNPDAALGLAARILLDQLQVFINFQEVEEEK 245 Query: 242 VKEEKPE-FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 ++ + + +P+LL+ V +LEL+VRS NCLK E I Y+GDLV RTE ++LKT N G+KSL Sbjct: 246 PEKLELQTINPVLLKKVYELELSVRSQNCLKNENIVYVGDLVARTETQMLKTANFGRKSL 305 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIAD 328 E+K VLA+ L GM+ WPP ++ Sbjct: 306 NELKKVLANFNLEFGMKDIGWPPDNLES 333 >UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Synergistaceae RepID=D1B5U6_THEAS Length = 342 Score = 354 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 149/338 (44%), Positives = 197/338 (58%), Gaps = 29/338 (8%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 + +E+V+ +H +V LEPLERG+G TLGNALRR+LLSS+PG + V +DGVLHE+ST Sbjct: 7 EIIVEEVTPSHGRVVLEPLERGYGTTLGNALRRVLLSSIPGAGIVAVRVDGVLHEFSTIP 66 Query: 73 GVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 GV+ED++E+LLNLK + VRV G D +L L G V AADI D DVE V P+ VI Sbjct: 67 GVREDVIELLLNLKHVPVRVSGPGTDVKVLRLEAEGPKVVRAADIQGDADVEFVDPEAVI 126 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 C L DE +SM + ++RG GY P P+ LL+DA +SPV+R+ Y V+ Sbjct: 127 CTL-DEGHRVSMDLYIERGVGYAPIDRP---RPSYLPVDALLIDAIFSPVKRVRYEVQDV 182 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP---------- 240 R QRTD D+LV+E+ TNG + +A+ A++IL+ + Sbjct: 183 RSGQRTDYDRLVLEVWTNGVVSFRDAVAEASSILSGYFRGLSTSLWGQSSAVTAGDEDFF 242 Query: 241 ---------EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 EV E D +L RP+ DLEL+VRS NCL IH IGDLV R + ELLK Sbjct: 243 EEKDEEDLQEVPAVCGEDDSVLSRPIKDLELSVRSENCLLRGGIHRIGDLVSRPKEELLK 302 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE 329 NLGK SL EI++ L GLSL + P+ AD+ Sbjct: 303 IRNLGKISLREIEEKLGKFGLSL----KGEEPSGEADQ 336 >UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Chloroflexus RepID=B8G8K2_CHLAD Length = 337 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 8/327 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ + PR V + + + + + PL+RG G +LGNALRR+LLSS+PG AVT ++ Sbjct: 1 METLELSLITPR-VTLLAAAENYGRFAIAPLQRGHGTSLGNALRRVLLSSIPGAAVTRIK 59 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 I GV+HE++ GV ED +++LN+KG+ +R V L L K G GPV A DI Sbjct: 60 ITGVIHEFTAIPGVVEDGTQLVLNVKGIRLRSYSDRAVALQLVKQGPGPVFAGDIDAPST 119 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEIV PQH +C + DE+ ++ M++ V+RGRG A T PIG + VDA +SP+ Sbjct: 120 VEIVNPQHYLCTIDDEHTTLEMQLTVERGRGVQLADTVSG-----MPIGEIAVDALFSPI 174 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 R+ + VE + T D+L+IE+ T+GTI P +A+ AA IL + V L + Sbjct: 175 PRVNFLVEEIGGDPLTGYDRLIIEIWTDGTIKPGDALSHAAQILTQYFSRIVSLNQPEES 234 Query: 241 EVKE--EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E + P D I R +D+L L+ R+ N L+ I IG L++ + L+ NLG K Sbjct: 235 EQQPTLPPPIPDEIANRTIDELGLSTRTYNSLRRADIQTIGQLLRLDDRGLMSIRNLGAK 294 Query: 299 SLTEIKDVLASRGLSLGMRLENWPPAS 325 + EI LA+ G G P + Sbjct: 295 GIEEIHQRLAALGYRSGETTSGHLPDT 321 >UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Anaerococcus RepID=C7HSB2_9FIRM Length = 317 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 196/312 (62%), Gaps = 12/312 (3%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++DI++ + + K L PLERG+G T+GN++RR+LLSS+PG +V+++ IDGVLHE+S Sbjct: 8 KIEILDIDEET-NYGKFVLYPLERGYGTTIGNSMRRMLLSSLPGSSVSKILIDGVLHEFS 66 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV ED+ E++LN+KG+ ++ K+++ L L+ G VTA DI D +++ P H Sbjct: 67 TIPGVVEDVPELILNIKGIDIKKHTKEDITLFLDIEGPKIVTAKDIKTDAQIDVANPDHY 126 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 + + D+ + + + V G+GY A +++D PIG + +D+ ++PV+ + + VE Sbjct: 127 LATVNDKG-RLFIALDVTDGKGYRVAE---QNKKDTDPIGAIAIDSSFTPVKSVNFTVEN 182 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE-------V 242 RV + TD DKL++E+ T+GTI P+EA+ A+IL E + F DL + P Sbjct: 183 TRVGESTDYDKLILEVWTDGTITPQEALSEGASILMEDIRFFKDLPGQQFPPEDEEEEIE 242 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + E+ L + +++L+L++RS NCLK + +G++++++E EL N GKKSL E Sbjct: 243 EIEEDNNQMELSKTIEELDLSLRSFNCLKRAGYNTVGEIIEKSESELKDIKNFGKKSLEE 302 Query: 303 IKDVLASRGLSL 314 + D + S GLSL Sbjct: 303 VIDKIHSLGLSL 314 >UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Bacteroidetes RepID=RPOA_CYTH3 Length = 329 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 195/327 (59%), Gaps = 13/327 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 S+ F P V +E+ H +PLE+G+G T+GNALRRILLSS+ G A+T +++ G Sbjct: 2 SILSFQMPEKVVMEKADDFHGLFEFKPLEKGYGVTIGNALRRILLSSLEGYAITGIKVPG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLNKSGIGPVTAADI-THDGDV 121 VLHE+ST GV+ED+ EI+LNLK + ++ +E + ++ A DI Sbjct: 62 VLHEFSTIPGVREDVTEIILNLKQVRFKKISDVNENKIVVSIKKQASFKAGDIAKFTSAY 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 +I+ P+ +IC++ D N++ + + +++GRGY+PA ++ E+ G + +DA ++P++ Sbjct: 122 QILNPELLICNV-DSNSNFDIELTLEKGRGYLPAE---ENKPAEQIFGYIPIDAIFTPIK 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD-------L 234 + Y+VE RVEQRTD +KL++E+ T+G+I PE+A++ AA IL + F D + Sbjct: 178 NVKYSVENTRVEQRTDYEKLILEILTDGSIHPEDALKGAANILIKHFMLFSDQTMTFEAV 237 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 + + V EE +L + DL+L+VR+ NCLKA I +G+L +++K N Sbjct: 238 KAEEEETVDEEFLHMRKLLKTSLADLDLSVRAYNCLKAADIKTLGELATLDISDMMKFRN 297 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLENW 321 GKKSL E++ ++ + LS GM + Sbjct: 298 FGKKSLNELEQLIIDKNLSFGMDTAKY 324 >UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Tax=Bacteria RepID=RPOA_LEPBA Length = 325 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 118/324 (36%), Positives = 204/324 (62%), Gaps = 12/324 (3%) Query: 2 QGSVTEFLKPRLVDI--EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV 59 + + F +P+ ++ + + + K EP ERG G T+GN+LRR L+SS+ G A++ + Sbjct: 4 KNLLKGFKRPKKIEFTTDVNTPNYGKFVAEPFERGIGTTIGNSLRRTLMSSIEGAAISAI 63 Query: 60 EIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDE---VILTLNKSGIGPVTAADIT 116 I+GV HE+S EGV ED+ I+LNLK + ++ + +D+ ++ L G G AAD+ Sbjct: 64 RIEGVSHEFSYIEGVAEDVTRIILNLKQVRIKYEPEDKEASKVIHLELKGAGYFRAADLA 123 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 D +EI+ P I L +E+A++ M +++QRGRGYVPA + ++D +G + +D+ Sbjct: 124 VDSSIEIMNPDLHIATL-NEDANLIMDLEIQRGRGYVPAEDK---KKDIEVLGTIPIDSI 179 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 +SP++++ + V RV QR+D +KL +E+ T+G++ PE+A+ +AA IL + L F++ + Sbjct: 180 FSPIQKVLFEVSETRVAQRSDYEKLTMEVWTDGSVSPEDAVAQAAKILKDHLTVFINFEE 239 Query: 237 VRQPEVKEEKPEFDPIL---LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + E +E + + + V++LEL+VRS N L++ I +IG+LV+R+E E+ K+ Sbjct: 240 EIEEEEEELDEADEKLKAALSKHVEELELSVRSTNVLRSLEIDFIGELVKRSEDEMTKSK 299 Query: 294 NLGKKSLTEIKDVLASRGLSLGMR 317 + ++SL E+K L+S GLS GMR Sbjct: 300 HFSEQSLLELKAKLSSMGLSFGMR 323 >UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Hydrogenothermaceae RepID=C1DX45_SULAA Length = 326 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 129/322 (40%), Positives = 194/322 (60%), Gaps = 17/322 (5%) Query: 4 SVTEFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S+ +F+ P + ++ + K+ +EPLERG+G TLGNALRR+LLSS+P A+T V+I Sbjct: 3 SLLDFVMPSKIYWDESTKTENFGKLYVEPLERGYGITLGNALRRVLLSSLPSGAITAVKI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGPVTAADITHDGD 120 GV HE++T +GV ED+ EI+LNLK + +++ E L G G V A DI Sbjct: 63 VGVPHEFTTVKGVIEDVSEIILNLKQIRLKIDENIERDFAILEVEGPGKVFAKDIKAPPG 122 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 +EIV P IC L+ EN + M +++RGRGY + ED IG +L+D +SP+ Sbjct: 123 IEIVNPDEYICTLS-ENVKLQMEFRIERGRGY----KTVEELEDINEIGWILIDTSFSPI 177 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD------- 233 +R + VE RV +TD D+L++E+ET+GTI P+EA+ ++A IL E Sbjct: 178 KRCTFFVEPVRVGDKTDYDRLILEIETDGTITPDEALEKSANILIEHFTLLQKPTVRKAQ 237 Query: 234 -LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 ++ P+ +E K E D + L +D+LE++ R+ N L+ I+ IGDLV+ +E +L + Sbjct: 238 VIKKTVAPKTEELKIEEDKLSLA-IDELEISSRAINTLRKLGINTIGDLVKLSEDDLKEA 296 Query: 293 PNLGKKSLTEIKDVLASRGLSL 314 ++G+KSL EIKD LA GL L Sbjct: 297 KSIGRKSLKEIKDALADMGLEL 318 >UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Clostridiales RepID=C7REF5_ANAPD Length = 318 Score = 346 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 13/311 (4%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 +++DI++ + K L PLERG+G T+GN++RR+LLSS+PG +V+++ I+GVLHE+ST Sbjct: 10 QILDIDE-EENYGKFALYPLERGYGTTIGNSMRRVLLSSLPGSSVSKILIEGVLHEFSTI 68 Query: 72 EGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 +GV ED+ EI+LN+KGL V ++V L L+ G VTA DI D V+I P H I Sbjct: 69 DGVVEDVPEIVLNIKGLDVTKHVDEDVTLFLDIEGPKIVTAKDIKADSSVDIANPDHYIA 128 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR 191 + +E + + + + V G+GY + ++++ PIG + +D+ ++PVE++ + VE R Sbjct: 129 TV-NEKSRLFIAMDVTDGKGYRVSDD---NKKESDPIGAIAIDSSFTPVEKVNFTVENTR 184 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE--- 248 V + TD DKLV+E+ TNGTI P+EA+ ++IL E F +L + + P EE+ Sbjct: 185 VGESTDYDKLVMEVWTNGTITPQEALAEGSSILIENFSFFNELPNQQFPPEVEEEEIEEV 244 Query: 249 -----FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 L +++L+L++RS NCLK +GD+++ +E EL N GKKSLTE+ Sbjct: 245 EEEDSLSEDLAMTIEELDLSLRSFNCLKRAGFDRVGDIIKVSESELKTIKNFGKKSLTEV 304 Query: 304 KDVLASRGLSL 314 + L GLSL Sbjct: 305 IEKLDELGLSL 315 >UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEJ3_ELUMP Length = 329 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 125/332 (37%), Positives = 200/332 (60%), Gaps = 21/332 (6%) Query: 4 SVTEFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 + + + P + +++ V+ + ++ EP E G+GHT+GN+LRRILLS + G AVT V + Sbjct: 2 AFNQLVLPTKIQLDEKTVTPFYGRIIAEPYESGYGHTVGNSLRRILLSGLDGSAVTAVRV 61 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDV 121 G +HEYST V+ED++ ILLNLK L V+++GK+ + L S G VTA DI V Sbjct: 62 RGAVHEYSTIPNVKEDVINILLNLKKLRVKLEGKNREYVYLTASKPGKVTAKDIAEVSGV 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 EI+ I +L ++ + + I++ +G+GYVPA + +RP G + VDA +SP+ Sbjct: 122 EIINKDLEIANL-EQGGKLELEIEISQGKGYVPAED---LSKIQRPAGFIPVDAIFSPIL 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 ++ Y+VE ARV Q+TD D+LVI++ T+GT++P +A+ +AA +L++ L F + Sbjct: 178 KVHYDVEPARVGQKTDYDRLVIQITTDGTLEPAKALHKAAVLLSQSLHIFTIEGEEVNAA 237 Query: 242 VKEEKP---------------EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 E +P + + +L + V+ +EL+ RS NCLK+E ++ + DLV +TE Sbjct: 238 APETEPLSTTGSVSGVSAVNSKVEELLNQSVEFIELSSRSINCLKSEGVNTVKDLVSKTE 297 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 +L N G +SL E+K+ LA LSLGM+ Sbjct: 298 DDLKMIKNFGTRSLDEVKERLAEMNLSLGMKF 329 >UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Tax=Thermus aquaticus RepID=RPOA_THEAQ Length = 314 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 175/312 (56%), Gaps = 11/312 (3%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 LK + + + LEPLERGFG TLGN LRRILLSS+PG AVT V I+ VLHE+ Sbjct: 6 LKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEF 65 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVEIVKP 126 ST GV+ED++EI+LNLK L VR L L G V A D T DVEI+ P Sbjct: 66 STIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVEIMNP 125 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 I L +E + M ++V RG GYVPA + I + VDA +SPV R+A+ Sbjct: 126 DLHIATL-EEGGKLYMEVRVDRGVGYVPAERHGIKDR----INAIPVDAIFSPVRRVAFQ 180 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD--VRQPEVKE 244 VE R+ QRTDLDKL + + T+G++ P EA+ +A IL E L F + + PEV + Sbjct: 181 VEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTPEVSK 240 Query: 245 EKPEF--DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + + L P+++L L+ R + LK E I + L+ +L P +G++SL E Sbjct: 241 GEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGERSLEE 300 Query: 303 IKDVLASRGLSL 314 I+ LA +G +L Sbjct: 301 IRQALAKKGFTL 312 >UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZB0_UNCTG Length = 323 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 194/320 (60%), Gaps = 5/320 (1%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ E L+ ++D + + + + P ERG+GHT+GN+LRRILLSS+ G A+T V+ Sbjct: 1 MKALDLEKLRKLILDEKTATKFYGHFSAGPFERGYGHTIGNSLRRILLSSLEGAAITSVK 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 I G HE++ +GV+ED+ +I+LNLK + V++ + L L G VTA DI + Sbjct: 61 IAGAFHEFAVLKGVKEDVAQIVLNLKRIKVKLHSEGPEKLYLKVKKAGTVTAKDIEANAS 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEI+ P+ I ++ D ++ M ++ G+GYV A + + G +++D+ +SP+ Sbjct: 121 VEIMNPEQEIANI-DNGTTLEMELEASLGKGYVLAE---EMKSNGYSSGTIILDSLFSPI 176 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 ++ Y VE RVEQ + DKL+IE+ T+G++ P++A+ R+A IL + L F D + Sbjct: 177 IKVNYEVENTRVEQTLNYDKLIIEIWTDGSVSPKDALMRSAEILRKILVIFTD-NAFKTE 235 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 EV +K E D IL +PV ++++V++ LK+ I + DLV+ E +LL NL K+S Sbjct: 236 EVSADKEEQDGILGKPVSIMDISVKTLKSLKSAGIETVEDLVKIKEEDLLNFNNLSKRSC 295 Query: 301 TEIKDVLASRGLSLGMRLEN 320 EIK+ + GLSLGM++E+ Sbjct: 296 EEIKNRVKELGLSLGMKIED 315 >UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4J0_GEMAT Length = 357 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 139/346 (40%), Positives = 199/346 (57%), Gaps = 24/346 (6%) Query: 5 VTEFLKPRLVD--IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 ++ ++P+LV+ + S A+ L+PLERGFGHTLGNA+RR+LLSS+ G AV ID Sbjct: 6 LSGLVRPQLVEATKREDSPNLAEFRLQPLERGFGHTLGNAMRRLLLSSLRGSAVWAFRID 65 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDV 121 GV+HE+ T GV ED+ +I+ NLK L + + + ++ +L ++KSG G VTAADI G V Sbjct: 66 GVVHEHQTIGGVVEDVHQIIGNLKTLTLALPDEVEQTVLRISKSGPGTVTAADIIATGGV 125 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ P H I +T E ++ + V +GRGY+ + H + + + +DA YSPV Sbjct: 126 RIIDPSHHIFTITGER-DFNIELYVNKGRGYIESDQ--HPADKNLSVDVVRIDAIYSPVR 182 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL--RDVRQ 239 R+ + V RV QRTD D+L + +ETNGT+ PEEA+ AA + + FV Q Sbjct: 183 RVNFTVAETRVGQRTDYDRLTLTVETNGTMSPEEAVSYAAALAQTHFQYFVGFGSSASAQ 242 Query: 240 PEVKEEKPEFD-----PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 P + D + P+DDLEL+VRS N LK I +GDLV++TE ++L+ N Sbjct: 243 PGTAGDGANSDAIRLAELFRTPIDDLELSVRSVNSLKNSNIRSLGDLVRQTEAQILQVKN 302 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE-----------NWPPASIADE 329 GKKSL EI +L GL+ GMR E PP+ A+ Sbjct: 303 FGKKSLQEIAALLEKEGLNFGMRYEESADGVRILDMGTPPSRAAEN 348 >UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Tax=Deinococci RepID=RPOA_DEIGD Length = 331 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 176/319 (55%), Gaps = 32/319 (10%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED++ I+ Sbjct: 16 YGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVIRII 75 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLK L V+ LTL G G V A+ D EIV P I L E+ + M Sbjct: 76 LNLKELVVKFHAPGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-EDGKLVM 134 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 ++V+ G GYVPA + I + VDA +SPV R+AY+VE RV Q+TDLD+L+ Sbjct: 135 EVRVEEGEGYVPADKHATKDR----INSIPVDAVFSPVRRVAYHVENTRVGQQTDLDRLI 190 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV------------------------R 238 + + T+G++ P+EA+ RA IL ++L F ++ V R Sbjct: 191 LRIWTDGSVGPQEALDRAVEILRDELTVFGNVETVSAAAPELPSVYTPAAPIVSGYDLPR 250 Query: 239 QPEVKEEKPEFDPILLRP---VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 QPE+ + L P ++ L LT R + LK E I + L ++ +L K P + Sbjct: 251 QPELSINPQPYPADLDTPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGI 310 Query: 296 GKKSLTEIKDVLASRGLSL 314 G++SL EIK LA GL+L Sbjct: 311 GERSLDEIKQQLAQFGLAL 329 >UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 Tax=Thermotogaceae RepID=RPOA_THEP1 Length = 336 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 126/337 (37%), Positives = 186/337 (55%), Gaps = 32/337 (9%) Query: 5 VTEFLKPRLVDIEQVSS----THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + EF+ P+ + +E+ +A+ +L PLERG+ T+GNALRR+LLSS+P A+ V Sbjct: 1 MIEFVIPKKLKVEEEREEKDYYYARFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVR 60 Query: 61 I--DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADIT 116 HEY EGV+EDIL+I+LNLK + RV K + + + K G G + A DI Sbjct: 61 FIKPEKYHEYDYIEGVKEDILDIILNLKKVQFRVNVTVKGTIKMEVEKKGPGELVAGDIK 120 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 +E+ P I L + A + + + G+G+VP S R E+ +G + +D Sbjct: 121 TPAGIEVANPDLHIATL-NSKADLFFEVYAEVGKGFVPVSER----EERPDVGWIPIDGV 175 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD-LR 235 +SPV ++ + E RV +RTD DKL++E+ T +I PEEA+R+AA IL + + L Sbjct: 176 FSPVIKVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVTEGLP 235 Query: 236 DVRQPEV-----------------KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYI 278 +++ E +EE E + R +D+LEL+VRS NCLK I I Sbjct: 236 ELKISEEYIITSEEEEAEIPAVDHEEENRENLDVYNRKIDELELSVRSLNCLKRAKIETI 295 Query: 279 GDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-RGLSL 314 GDL+ +TE ELLK N G+KSL E+K+ L GL L Sbjct: 296 GDLLSKTEEELLKIKNFGQKSLDEVKEKLKEKFGLEL 332 >UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain (DNA-dependent RNA polymerase) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CXD4_DEIDV Length = 333 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 120/326 (36%), Positives = 176/326 (53%), Gaps = 34/326 (10%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 +V + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED Sbjct: 11 RVDGNYGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKED 70 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 +++++LNLK L VR LTL G G V A+ D EIV P I L E+ Sbjct: 71 VIQLILNLKELVVRFHTSGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-ED 129 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 + M ++V+ G GYVPA + I + VDA +SPV R+AY+VE RV Q+TD Sbjct: 130 GKLVMEVRVEEGEGYVPADKHATKDR----INSIPVDAVFSPVRRVAYHVENTRVGQQTD 185 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD----------------VRQPE 241 LD+L++ + T+G+ P++A+ ++ IL ++L F ++ V Sbjct: 186 LDRLILRVWTDGSTGPQDALDKSVEILRDELTVFGNVEALPALVSDVAPVYTPTPVPAHN 245 Query: 242 VKEEKPEFDPILLRP-------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 V + P + L P ++ L LT R + LK E I + L ++ + Sbjct: 246 VYDLPPTSGSVNLNPGDYPAELDSPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRD 305 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSL 314 L K P +G++SL EIK LA GL+L Sbjct: 306 LKKVPGIGERSLDEIKQQLAQFGLAL 331 >UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Tax=Eukaryota RepID=RPOA_GUITH Length = 318 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 167/318 (52%), Gaps = 13/318 (4%) Query: 5 VTEF-LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +T+F ++ + ++ ++PL+ G G TLGNALRR LLS + G A+T V I G Sbjct: 1 MTQFEIECLDSKVYNARDHWSRFVIDPLKPGQGTTLGNALRRTLLSELEGLAITAVRIAG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE+ST G++ED+LEILLNLK + Q ++ I L G VTA ++++ Sbjct: 61 VSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKL 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P+ I + N ++ M K++ G GY +E E L VD+ + PV+++ Sbjct: 121 IDPEQYIATICGNN-TLEMEFKIEVGSGYKIVEKDNSTEHFE----FLQVDSVFMPVKKV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 + +E R E ++L++++ TNG+I +EAI AA L + + E Sbjct: 176 NFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDG--ESETD 233 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKA--EAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 E E I +++L+L+VR+ NCLK IH + DL+ ++ +L++ N G+KS Sbjct: 234 YETNETSHINQILIEELQLSVRAYNCLKRGCAHIHSVADLLDYSQEDLIEIKNFGQKSAE 293 Query: 302 EIKDVLASRGLSLGMRLE 319 E+ D L R LG+ L Sbjct: 294 EVIDALQKR---LGINLP 308 >UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas paramecium RepID=D2ISB5_9CRYP Length = 310 Score = 331 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 8/307 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +K + +S + + T +PL+ G G T+GNALRR+LLS + G A+T + G +HE+ Sbjct: 6 IKYIESETYTNTSYYGRFTFQPLKLGQGLTIGNALRRVLLSDLEGIAITSARVSGSVHEF 65 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 S G +ED+LEILLNLK + ++ KD I L G VTA+D V+ V P Sbjct: 66 SEIPGTREDVLEILLNLKKIVLKGSSKDAGIARLKVQGPCIVTASDFELPSFVKAVDPSQ 125 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I + D N + + + + GRGY + + + L +DA + PV ++ Y +E Sbjct: 126 YIATICDSNV-LEIEVSISAGRGYKLVNR----QSLDSGKDSLELDAVFMPVNKVNYTIE 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 + +KL +E+ TNG++ PEE++ +AAT+L + L + + + +K Sbjct: 181 EINTDFPIAEEKLTLEIWTNGSLTPEESLMQAATVLTDILAPIQRIHLTDEEDFPADKE- 239 Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + P++DL+L+VR+ NCLK I Y DL+ R++ ELL+ N GKK E+ L Sbjct: 240 -PEVKNLPIEDLKLSVRAYNCLKQINIDYTEDLLTRSQEELLEIKNFGKKCCEEVTQALK 298 Query: 309 SR-GLSL 314 + GL+L Sbjct: 299 NIVGLTL 305 >UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) n=2 Tax=Bacteria RepID=B0VI04_9BACT Length = 391 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 10/322 (3%) Query: 5 VTEFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + P VD ++ S T+ K + PLE G+G T+GN LRRILLSS+ G AV V I+ Sbjct: 4 LEPLQMPNEVDYDKASYSRTYGKFEIGPLEPGYGTTIGNTLRRILLSSIQGAAVRFVRIE 63 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G+ HE+ G D ++++L LK L + +EV L L G G +TA+ I V+ Sbjct: 64 GLHHEFCPIPGTNSDYIDLILRLKQLVISSSSVEEVPLVLEHKGKGVITASMIQETAYVK 123 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ + + D + + + V GRGYV A + + + +G + VD+ YSPV + Sbjct: 124 IINKDLYLLEVVD-DIDFRLEMIVGIGRGYVSADRQ---NPEGKAVGFIPVDSIYSPVLK 179 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ---LEAF-VDLRDVR 238 + ++V RV++R + D+L++E+ TNG ++P A+ AA IL + + F ++ + +R Sbjct: 180 VNFSVSHQRVKERMNFDRLIMEIYTNGAVEPSIALFLAAKILKDMAAKISLFEIEPQYIR 239 Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E+ E E + IL V ++EL+VR+ANCL I IGDLV +TE E+LK N GKK Sbjct: 240 DIELDPELEEKERILKTSVKEIELSVRAANCLAQAKIETIGDLVSKTEAEMLKFRNFGKK 299 Query: 299 SLTEIKDVLASRGLSLGMRLEN 320 SL EI L L LGM +E Sbjct: 300 SLEEIVQKLKKYDLHLGMDVEG 321 >UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Tax=Dehalococcoides RepID=RPOA_DEHSC Length = 330 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 182/315 (57%), Gaps = 11/315 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +++ P + E + + +EPLE+GFG T+GN+LRRILLS + G A+T V IDG+ Sbjct: 1 MSDLAIPTISCTESDGK-YGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGI 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ +ED L+ LLNLK + V E IL L SG VTAADI D E+V Sbjct: 60 QHEFCALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLRASGSKVVTAADIEPSNDFEVV 119 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ + L ++A +++ ++V+ GRGY P + + PIG + VDA ++P+ ++ Sbjct: 120 NPELYLLTLDSDDAVLNVELEVELGRGYRPPESA-----ENTPIGTIPVDAIFTPIRKVN 174 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 + E V + T L++LV+E+ T+GT++P A+ R+A IL +Q + V V E++ Sbjct: 175 FTTEPMHVGRETSLERLVLEVWTDGTVEPATAVSRSADILVKQFASLVSHSKV-VAEIEA 233 Query: 245 EKPEF----DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 +P + P++ L+L+VR+ NCL+ I +G+++ R ELL N G KSL Sbjct: 234 SEPVKYTIPEEKYNMPIEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSL 293 Query: 301 TEIKDVLASRGLSLG 315 TE++D L + GLSL Sbjct: 294 TELEDRLKTIGLSLN 308 >UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KYM7_9FIRM Length = 312 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 125/320 (39%), Positives = 195/320 (60%), Gaps = 13/320 (4%) Query: 5 VTEFLKPRLVDIEQVSST-HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +KP L E V +A+ + L +G LGN+LRRILLSSMPG AV+EV++D Sbjct: 1 MENIMKPVLEVKEFVEEQGYARFVCDSLAKGEATVLGNSLRRILLSSMPGSAVSEVKLDS 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHDGDV 121 V HE+S+ GV+ED+ EI++NLK LA+R G++ V+ ++ G G V A+DI +V Sbjct: 61 VYHEFSSIPGVKEDVSEIIMNLKNLALRYTGSGEEPVMAYVDYMGEGVVKASDIKVSSEV 120 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 EI+ P V+ HL+ ++A I M +KV +G+GY A+TR HS + IG + VDA YSPV+ Sbjct: 121 EIMNPDLVLAHLSGKDAKIYMEMKVSKGKGYDGANTRDHS---DLAIGVIAVDAIYSPVK 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 ++ VE ++ + ++L++++ T+ T+ PEEA+ AA IL L+ F+ + + + Sbjct: 178 KVNVFVE-----EQGNTERLILDVTTDRTMMPEEAVSLAARILQTHLQLFMHMDTSAKEQ 232 Query: 242 VKEEKPEF--DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + L + +D+LEL+VRS NCLK I+ + DL +T +L+K N+G+KS Sbjct: 233 GAAVANQEAGRDELNKSIDELELSVRSYNCLKRAGINTVEDLCAKTMDDLMKVRNMGRKS 292 Query: 300 LTEIKDVLASRGLSLGMRLE 319 L EI + L S GL L + + Sbjct: 293 LDEILNKLESMGLFLSSKAD 312 >UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Tax=Emiliania huxleyi RepID=RPOA_EMIHU Length = 309 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 168/303 (55%), Gaps = 9/303 (2%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 + + AK +EPL +G G T+GNALRR LLS++PG A+ I GV HE+S GV+E Sbjct: 12 KAATENVAKFCIEPLSKGQGITIGNALRRTLLSNIPGTAIVGTRISGVDHEFSVIPGVKE 71 Query: 77 DILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDE 136 D LEILLNLK L + + +I LN G VTA DI D+E++ PQ I +TD Sbjct: 72 DALEILLNLKQLVFKGNLNEPIITRLNIQGPCIVTAGDIDIPTDLELIDPQQYIATITD- 130 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRT 196 + + M +++G YV + + P G L VDA ++P++++ + VE + ++R Sbjct: 131 FSHLEMEFILEQGESYVLSEKTASNN----PRGFLAVDAVFTPIKKVNFFVETSSSKERL 186 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR---DVRQPEVKEEKPEFDPIL 253 + ++L+IE+ETNG+I P EA+ AA L+ + + + + Sbjct: 187 EKERLIIEIETNGSILPLEALNLAAERLSSLFKLVNSADLTAEFPTEVENIVQVSQTDVT 246 Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-RGL 312 +++LEL+VR+ NCLK IH +G+L++ ++ LL+ N G+KS E+ + L L Sbjct: 247 GVLIEELELSVRAYNCLKRAQIHTLGELLKYSKENLLEFKNFGQKSANEVCENLHERFNL 306 Query: 313 SLG 315 +L Sbjct: 307 TLN 309 >UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNA8_9FIRM Length = 313 Score = 326 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 113/300 (37%), Positives = 175/300 (58%), Gaps = 8/300 (2%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + + K + PL+RG+G TLGN++RR+LL S+PG A+ V+IDGV HE++T +G D Sbjct: 15 DLEKNYGKFAIMPLDRGYGTTLGNSMRRVLLGSLPGSAIATVKIDGVGHEFTTIKGSIAD 74 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 + EIL+N+KG+A++ + VIL LN G VTA DI+ + +VEI H I L +E Sbjct: 75 VPEILINIKGIALKKFNDEPVILELNVKGPKVVTAGDISENQNVEIANKDHYITTLNEEG 134 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 I M + V G+GY + ++ I + VD+ +SPV+++ + V RV Q D Sbjct: 135 -EIRMDLLVLNGKGYRVSD----LNKEYCDINSIAVDSSFSPVKKVNFIVGNTRVGQSID 189 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR--QPEVKEEKP-EFDPILL 254 DKL IE+ TNGTI P+EA+ A I + L F L D+ +K+ K + + +L Sbjct: 190 FDKLEIEVWTNGTITPQEALSTGAGIFIDYLSLFRSLPDINLDNSSIKDGKILDANGVLS 249 Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + V++L+L++RS NCLK + + D++ + +L K N GKKS+ E+ D + GL Sbjct: 250 KSVEELDLSLRSFNCLKRANLDTVKDIISQDIEQLKKIKNFGKKSVEEVVDKIHELGLKF 309 >UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA10_9FIRM Length = 318 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 174/312 (55%), Gaps = 9/312 (2%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++ IE+ + K EPLE +G LGNALRR+LLSS+PG A+ + IDGV HE++ Sbjct: 4 KYKISTIEETTK-EGKFLFEPLEYRYGTPLGNALRRVLLSSIPGGAIFSIRIDGVYHEFT 62 Query: 70 TKEGVQEDILEILLNLKGLA--VRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 +GV+ED+ I+LNLK L + + + L +++ G V A DI V ++ Sbjct: 63 GIKGVKEDVASIILNLKQLILDIDIHDNEVYTLRIDQEGPKTVVAGDIECPTGVTVLNKD 122 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDE-RPIGRLLVDACYSPVERIAYN 186 IC L+ E SI M ++ + GRG+V + ++E +P+G + D+ YSPV+ ++Y Sbjct: 123 LPICTLS-EGGSIHMELQARLGRGFVRSDVNKRMYQNEGQPLGIIYTDSLYSPVKNVSYV 181 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR----QPEV 242 + E + D L +E+ T+ TI P EA+ AA IL + L + + + EV Sbjct: 182 ANPIKSEDGSMYDSLELEITTDETIKPSEALAVAAKILRDHLSILASVDEASLEVKEQEV 241 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + + + ++DLEL+VRS NCLK I + +L Q+TE E++ NLGKKSL E Sbjct: 242 EVSEEPVVHTTHKMIEDLELSVRSYNCLKRAGIATVDELTQKTEEEMIHVRNLGKKSLQE 301 Query: 303 IKDVLASRGLSL 314 +KD + GLS Sbjct: 302 VKDKIKELGLSF 313 >UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidioschyzon merolae RepID=RPOA_CYAME Length = 316 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 14/309 (4%) Query: 6 TEF-LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 EF ++ I +AK L+PL T+GN+LRR+LLS + ++T V I G Sbjct: 8 IEFQIECAASTINHARDIYAKFILQPLSYTQALTMGNSLRRVLLSELESISITAVRIAGA 67 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQ-GKDEVILTLNKSGIGPVTAADITHDGD--V 121 HE +T +GV+ED+L+I+LNLK + R Q K I L G VTAA + + Sbjct: 68 SHELATLKGVREDVLQIMLNLKQIVWRGQLKKQPTITRLKVQGPAIVTAAAFQSEANSSA 127 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ I + ++ + M ++++ GY A + I L +D + PV+ Sbjct: 128 NIIDTCQYIATIDTQDI-LEMECQLEQSSGYRLA-------KPSEMIDWLPIDGVFMPVK 179 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 R+ + V+ A V++ L +E+ TNG+I P+EA+ +AA IL L + Sbjct: 180 RVNFWVDKALVDKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTLEW--KTS 237 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + + + +++L+L+VR+ NCLK IH + DL+Q T+ ELL N G+KS+ Sbjct: 238 HTKNEQTMAQLSNMLIEELDLSVRAYNCLKRAQIHSVADLMQYTQEELLALKNFGQKSVE 297 Query: 302 EIKDVLASR 310 E+ L + Sbjct: 298 EVNKALEQK 306 >UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Blattabacterium RepID=D0JAU5_BLASB Length = 337 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 110/329 (33%), Positives = 181/329 (55%), Gaps = 14/329 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ +F+KP + + + S L+PLE G+G TLGNALRR+LL S+ G AVT + I G Sbjct: 2 AILDFVKPDRIAMSEFSDNKGIFHLKPLEPGYGITLGNALRRVLLGSLKGFAVTSIRIKG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSG--IGPVTAADI-THDGD 120 V +E+ST EGV ED+ EI+LN K + ++ + T+N S VT + Sbjct: 62 VKYEFSTIEGVVEDVTEIVLNFKKIRLKQKISGIHKETVNASIHHGKQVTGGYLNKFISG 121 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 I+ VIC+ DE+ + + ++ GRGYVPA + ++ IG + +D+ Y+P+ Sbjct: 122 FHILNENLVICN-KDESIPLEISFTIEEGRGYVPAEEN--KKNNDHLIGTIPIDSIYTPI 178 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 + Y +E RV Q+TD + L +E++T+G+I P+ A+ A+ IL + F + ++ Sbjct: 179 RNVKYTIENCRVGQKTDFENLSLEIQTDGSICPKSALMEASKILIQYFSIFSHEKIGKKK 238 Query: 241 EVKEEKPE--------FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + + K + +L + D++L+VR+ NCLK+ +I I DLV +LK Sbjct: 239 QEEINKDKKYDEEFLRMRTLLKSKLSDMDLSVRTKNCLKSASIESIADLVSCNRNNMLKM 298 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLENW 321 N GKKSL E++ + +GL GM + + Sbjct: 299 RNFGKKSLDELESKMKEKGLCFGMEISEY 327 >UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 Tax=Cyanobacteria RepID=RPOA_SYNS3 Length = 312 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 104/300 (34%), Positives = 163/300 (54%), Gaps = 8/300 (2%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 I S + PLERG TLGN+LRR+L+ ++ G AVT V I GV HEY+T GV+ Sbjct: 13 ITDDRSQTGVFLIGPLERGQATTLGNSLRRMLMGNLAGTAVTAVRIAGVNHEYATIPGVR 72 Query: 76 EDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 ED+L+ILLN K L V + + I L SG V A D+ V++V + I ++ Sbjct: 73 EDVLDILLNCKQLTVTSRTDELEIGRLIVSGPAVVKAKDLQFSSQVQVVDGERPIATVS- 131 Query: 136 ENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARV-EQ 194 E S+ + + V+RG GY P ED I L +DA + PV R+ + + V E Sbjct: 132 EGHSLELEVHVERGVGYRPVD---RHNEDTSAIDLLQIDAVFMPVHRVNFTTDETAVAEG 188 Query: 195 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL 254 + ++L +E+ T+G++ P++AI +AA L E + + V +P + +PE Sbjct: 189 GSARERLRMEVVTDGSMTPDDAIAQAANQLIELFQPLATVTMVEEPGI---EPEPSAEAQ 245 Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 P+++L L+VR+ NCLK ++ + DL+ + +LL+ N G KS E+ + L G+S+ Sbjct: 246 IPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALERIGISI 305 >UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 Tax=Borrelia burgdorferi group RepID=RPOA_BORAP Length = 344 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 183/334 (54%), Gaps = 19/334 (5%) Query: 1 MQGSVTEFLKPRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 M+ + +F P ++ + ++ K T+ P ERGFG T+GN LRR+LLSS+ G A+T Sbjct: 3 MERFLKDFTIPEKIEFLKSQDDGSYGKFTIYPFERGFGVTIGNTLRRVLLSSIEGYAITA 62 Query: 59 VEIDG---------VLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGI- 107 + + V E+ GV ED LE++ N+K + +++ +G+ ++ + SG Sbjct: 63 MRVQSNNKDSSSKVVSSEFDLIPGVSEDTLEVIANIKNIHLKLREGEQRKTISFSVSGKD 122 Query: 108 -GPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDER 166 + A+ D VE+ VI L+ + ++ ++ GRGYV + + + Sbjct: 123 TNVLKASHFERD-GVEVFNKDLVIATLS-HDVNLDFEFQINYGRGYVSSE---QNSKYLE 177 Query: 167 PIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAE 226 + + +D+ +SP+E+++Y+VE RV QR+D DKLV+E+ T G I ++AI++AA+I+ E Sbjct: 178 EVNVIALDSIFSPIEKVSYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVRE 237 Query: 227 QLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 L VD D + K E +L ++ L+L+VRS NCL E + +G+L+ + Sbjct: 238 FLFPLVDFEDSVSVSFDKSKSESSNLLDMSIEKLDLSVRSLNCLAKENVRTLGELISKNA 297 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 EL K N GKKSL EI + L S L LGM E+ Sbjct: 298 EELSKARNFGKKSLEEIIEKLGSYQLFLGMSKED 331 >UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Tax=Acholeplasmataceae RepID=RPOA_AYWBP Length = 330 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 179/330 (54%), Gaps = 13/330 (3%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F+KP V+ + K T++PLERG+G T+GNALRR+LLSS+PG A+ V+I GV Sbjct: 4 LKFIKPFFVEEIDENPISGKFTIKPLERGYGITVGNALRRVLLSSLPGAAIVNVKIQGVE 63 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKD---EVILTLNKSGIGPVTAADITHDGDVE 122 E++T GV ED++ I+LNLK + V + E L L G +TAA V+ Sbjct: 64 QEFTTIPGVYEDVMTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTAASFELPAGVK 123 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ P H I L+D + M + +++G GYV A E++ +G + +D+ ++PV Sbjct: 124 IINPDHYITTLSD-DVCFHMTVTIKKGIGYVGAKENKVHIENQ--VGVIAIDSLFTPVVN 180 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 ++Y VE + + D+L IE+ TNG + +EA+ AA+IL + V+L Sbjct: 181 VSYQVEK----KLGNKDELTIEITTNGALLAKEALATAASILVDHFNVLVELSQKPAHVE 236 Query: 243 ---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + +K + +L ++ L+L+VR N LK I + LV+ +E E++K +LG+KS Sbjct: 237 FVSESKKEAHNYVLDLEIEQLDLSVRLFNSLKRAGIDTVASLVKLSEKEVVKLKSLGRKS 296 Query: 300 LTEIKDVLASRGLSLGMRLENWPPASIADE 329 E+KD GL L+ S+ ++ Sbjct: 297 FQELKDKFLEYGLEFNDYLKEALHHSVEED 326 >UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2 Tax=Physcomitrella patens RepID=RPOA_PHYPA Length = 450 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 26/330 (7%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K +E + + + P G +T+G ++++ LL + G AV+ V EY+ Sbjct: 128 KCVETQVEGERLHYGRFAVSPFRSGQANTVGVSMQKALLGEVEGAAVSCATFKNVKSEYA 187 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 +GV+E ++IL+NLK L +R + ++ G GPVTA DI +E+ P Sbjct: 188 AMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQH 247 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I +LT E S+ + + V++G GY + GR +D+ + PV Y+V + Sbjct: 248 IAYLTKE-VSLDIELDVEKGCGYRMGDHTKSGD------GRFYIDSVFMPVRNANYSVHS 300 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL--RDVRQPEVKEEK- 246 E + L +E+ TNG+I PEEA+ AA L + F+ ++V K K Sbjct: 301 YESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHKS 360 Query: 247 ---PEFDPILLRP----------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 +F+ VD L + ++ N LK I+ + DL+ T+ +LL P Sbjct: 361 FTMSQFNSSAEMSAKEVDLRHVYVDQLRIPSKAYNSLKRANINTVSDLLDYTQDDLLSIP 420 Query: 294 NLGKKSLTEIKDVLASRGLSLGMRLENWPP 323 N G+KS+ +I + L + + L P Sbjct: 421 NFGRKSVDDILEALQA---QFSIDLPENNP 447 >UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 Tax=Fusobacteriaceae RepID=RPOA_FUSNN Length = 326 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 178/312 (57%), Gaps = 14/312 (4%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 + + S+ + +EPL RG+G+TLGNALRR+LLSS+PG A+ + I+GVL E++ + Sbjct: 12 KITEVKESNYKGQFIVEPLYRGYGNTLGNALRRVLLSSIPGAAIKGMRIEGVLSEFTVMD 71 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 GV+E + EI+LN+K + V+ + E ++L+ G V AADI D +EIV P+ VIC Sbjct: 72 GVKEAVTEIILNVKEIVVKAESSGERRMSLSIKGPKVVKAADIVADIGLEIVNPEQVICT 131 Query: 133 LTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARV 192 +T + ++ + V G G+V + ++ + P+ + VDA Y+P+ +++Y ++ Sbjct: 132 VTT-DRTLDIEFIVDTGEGFVVSE---EIDKKDWPVDYIAVDAIYTPIRKVSYEIQDTMF 187 Query: 193 EQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ----------PEV 242 + TD DKL + +ET+G+I+ +A+ A +L L+ F+++ + + E Sbjct: 188 GRMTDFDKLTLNVETDGSIEIRDALSYAVELLKLHLDPFLEIGNKMENLRDDIEEMIEEP 247 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + + D +++L+LTVRS NCLK I + L + ELLK NLGKKSL E Sbjct: 248 MDIQVIDDKSHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKSLDE 307 Query: 303 IKDVLASRGLSL 314 I + + G L Sbjct: 308 ILEKMKDLGYDL 319 >UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha n=3 Tax=candidate division TM7 RepID=UPI00016B2694 Length = 294 Score = 315 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 117/297 (39%), Positives = 175/297 (58%), Gaps = 5/297 (1%) Query: 5 VTEFLK-PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +T+ + P L +IE SST A T+EPL G+G+TLGN+LRR+L+SS+ G AV +I+G Sbjct: 1 MTKVIHNPALSNIEDYSSTSAAFTVEPLRGGYGNTLGNSLRRVLMSSIHGAAVISFKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE++T G++ED+++I LNLK + +++ D + L L K G G VTA DI DVEI Sbjct: 61 ATHEFTTVPGIKEDVVDISLNLKSVKIKMHTDDPIELRLEKHGAGQVTAGDIQSHADVEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P+ VIC + D +A + + + GRGY+ S E + +DA +SPV R+ Sbjct: 121 INPEQVICTVDDPSAKAVIDLVIDSGRGYLSIED---SSETRLHSDHIALDAVFSPVIRV 177 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ-PEV 242 Y VE+ RV Q T+L+KL++ ++T+G+I P +A AA IL Q A V P + Sbjct: 178 RYKVESTRVGQETNLEKLIVVIDTDGSITPRDAFEEAAAILVNQYTALAGSTVVESAPAL 237 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 +E+ E L ++DL+LT R+AN L I + DLV TE +L + G K+ Sbjct: 238 GQEREEESNELNTSIEDLDLTARTANALINNDIRTVQDLVTLTEQDLRELKGFGSKA 294 >UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Tax=Embryophyta RepID=RPOA_ADICA Length = 345 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 160/322 (49%), Gaps = 29/322 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K IE + + + P +RG T+G A+RR LL + G ++T GV+HEYS Sbjct: 16 KCLESKIESKRLHYGRFLVSPFKRGQASTVGIAMRRALLQEIEGTSITCARFCGVVHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 T G+QE I ++L+NLK + +R K+++ L+ +G VTA D++ VE + Sbjct: 76 TITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQ 135 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I +T + S+++ +++++ GY + + G+ +DA + PV + Y++ Sbjct: 136 YIATIT-QPISLTIELEIEKDCGYRIENLAKSGK------GQFPIDAVFMPVRNVNYSIH 188 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV---------------D 233 + T + L IE+ TNG++ P EA+R+A+ L + L F+ Sbjct: 189 LFGSGRATQ-EILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDS 247 Query: 234 LRDVRQPEVKEEKPEFDP-----ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 L + P ++ + + + + R +D LEL R+ NCLK I+ I DL+ + + Sbjct: 248 LDLTKSPSLQPQFGDTNNLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSRED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASR 310 L K N G+KS+ ++ + L R Sbjct: 308 LSKLKNFGRKSVDQVSEALWDR 329 >UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=Borrelia RepID=B2S0K5_BORHD Length = 344 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 180/326 (55%), Gaps = 18/326 (5%) Query: 5 VTEFLKPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +F P ++ + ++ K + P E+GFG T+GN LRR+LLSS+ G A++ + I Sbjct: 8 LKDFTIPDRIEFLRGEDDGSYGKFIIYPFEKGFGVTIGNTLRRVLLSSIEGYAISAMRIQ 67 Query: 63 G--------VLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGI--GPVT 111 V E+ GV ED LE++ N+K + +++ +G ++++ +G + Sbjct: 68 SNQGGSLKIVSSEFDLIPGVVEDTLEVIANIKNIHLKLDEGVKSATISVSVNGKDTNVLK 127 Query: 112 AADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRL 171 A + + VE+ VI L+ E A++ +V GRGYV + H+ + + + Sbjct: 128 AVHLERE-GVEVCNKDLVIATLSSE-ANLDFEFQVDYGRGYVSSE---HNAKYLEEVNTI 182 Query: 172 LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 +D+ +SP+E++ Y+VE RV QR+D DKLV+E+ T G I ++AI++AA+I+ E L Sbjct: 183 ALDSIFSPIEKVTYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLLPL 242 Query: 232 VDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 V+ D V + + IL ++ L L+VRS NCL E + +G+L+ ++ EL K Sbjct: 243 VNFEDKVVHSVDDSEFRDSDILNMNIEKLNLSVRSLNCLTKENVKTLGELISKSAEELSK 302 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMR 317 N GKKSL EI + L+ GL LGM Sbjct: 303 ARNFGKKSLEEIVEKLSVYGLFLGMS 328 >UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BED9_9CHLO Length = 356 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 159/332 (47%), Gaps = 33/332 (9%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 IE+ + + + L P E G G TL N+LRR LLS + G A+ +EI+G LHEYS GV Sbjct: 18 RIEENKNFYGRFILGPFEVGQGLTLANSLRRTLLSEISGLAIVAMEIEGALHEYSNLPGV 77 Query: 75 QEDILEILLNLKGLAV--RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 QE IL+ILLNLK + + R + V L G G VTA+D+ ++ V P I Sbjct: 78 QESILDILLNLKQIVLVSRFEMDQPVFGFLKVQGPGIVTASDLKLPSSIQCVDPHQYIAT 137 Query: 133 LTDENASISMRIKVQRGRGYV-------------------PASTRIHSEEDERPIGR--- 170 L+ N +S++ V + + Y+ S + ++ I + Sbjct: 138 LSY-NGFLSIKFFVCQKKNYIFLKNASLKKKKIYKLKKNKIQSPILEKKKSNFLINKTSN 196 Query: 171 -LLVDACYSPVERIAYNVEAARVE-QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + +D + V ++ Y +E + +++ +E+ TNG++ P +AI AA + Sbjct: 197 VVSIDPNFFSVNKVNYLIETCSLFLFEKPKEQIFLEIWTNGSLHPRQAINEAAKRIVNIF 256 Query: 229 EAFVDLRDVRQPEVKEEK------PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV 282 F + R + +K K F + +L+L++RS CLK IH I +L+ Sbjct: 257 SPFQETRFYKPGRLKSSKLFSLKRENFKKFTSLDIANLDLSLRSYTCLKRANIHTIDNLL 316 Query: 283 QRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 Q + ELL N G +SL E+ ++L GL+L Sbjct: 317 QYSSEELLLLKNFGTRSLEEVLNILQQIGLNL 348 >UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 Tax=Eukaryota RepID=RPOA_THAPS Length = 313 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 90/306 (29%), Positives = 162/306 (52%), Gaps = 8/306 (2%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 ++ + + + + ++ L G G T+GN LRR+LL + G A+T V I GV E Sbjct: 7 LMECIKSEKIESGPMYGQFLIDSLSSGQGITIGNLLRRVLLGDLQGTAITGVRIAGVKDE 66 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 +S GV+EDILEILLNLKG+ ++ + + L G +TA+ I ++EI+ P Sbjct: 67 FSLIPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEIINPN 126 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 H I ++ + + + K++ G Y A+ + ++ + DA + PV+++ + V Sbjct: 127 HYIATISSSHI-LEIEFKIESGSKYRLANELFSDKFED----FIETDAIFMPVQKVDFKV 181 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKP 247 E ++L+I++ TNG+I PE+AI + ++ ++ + + ++ E +EK Sbjct: 182 ENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLFKSIGEQKINKEKENIKEKN 241 Query: 248 E---FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 DP +++L+L+VR NCLK I+ IGDL+ + +LL+ N G+KS E+ Sbjct: 242 HIKPIDPYTHIAIEELQLSVRPYNCLKRAQINTIGDLLDYSPEKLLELKNFGRKSADEVF 301 Query: 305 DVLASR 310 L ++ Sbjct: 302 ATLKNK 307 >UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Tax=Mollicutes RepID=RPOA_MYCCT Length = 317 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 187/317 (58%), Gaps = 10/317 (3%) Query: 5 VTEFLKPRLVDIEQ-VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F++P + +++ + K ++ PLERGFG TLGNA+RR LL++ PG +V ++I G Sbjct: 1 MKQFVRPEFILLKEGQDKNYGKFSVSPLERGFGITLGNAIRRTLLAATPGASVYAIKIAG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADITHD 118 HE+++ G+ E++ +I+LN+K L +R+ + V L + GPV A D+ Sbjct: 61 ATHEFTSIPGIIENVTKIILNIKQLVLRIDTSIYSDDEVVQLKIRSDIQGPVYAGDLELP 120 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178 VE++ +I ++ E + + + + RGY +E++ P G + +D+ YS Sbjct: 121 AGVEVLNQDLLIATIS-EGGILDLVLYAKNSRGYKTFKDNK-NEKNIEP-GMITIDSNYS 177 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDV 237 P+ ++AY+V++A++ + DL+KL +E+ T+G+I +AI A+ IL LE F+DL R++ Sbjct: 178 PIIKVAYSVDSAKIGRAIDLEKLELEVTTDGSITAIDAISIASKILVAHLEFFIDLNREI 237 Query: 238 RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 EV D L R V++L+ T RS NCLK I+ + +LV + E E+ NLG+ Sbjct: 238 SVLEVIGVNQTDDKELDRTVEELDFTQRSLNCLKRAGINTLRELVTKNEDEIGSIRNLGR 297 Query: 298 KSLTEIKDVLASRGLSL 314 KSL EIKD +AS GL+ Sbjct: 298 KSLKEIKDKVASLGLAF 314 >UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Tax=Treponema RepID=RPOA_TREDE Length = 351 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 177/330 (53%), Gaps = 19/330 (5%) Query: 2 QGSVTEFLKPRLVDI--EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV 59 + + F KP+ ++ ++ + ++ K T P E GFG T+GN LRRILLSS+ G A++ V Sbjct: 4 KNLLKGFKKPKGLEFAQQESTESYGKFTASPFETGFGTTIGNCLRRILLSSIQGYAISAV 63 Query: 60 EI-----DGVLH----EYSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGP 109 I DGV H E+ V ED LEIL LK + +R+ + E G Sbjct: 64 LITSHDADGVPHTISSEFENIPNVSEDTLEILNKLKQIRLRLSDESEQGDFHFEFKGPAS 123 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 +T+ D +G +EI+ + L + A++S ++V GRGYVPA +E+ +G Sbjct: 124 ITSKDFAVEGQLEILGEPFYVMELM-KGANVSFDVQVDFGRGYVPAEV---NEKYIEIVG 179 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +DA Y PV +++Y +E RV QR D DKL++E+ T+ T+ PE+ + AA I + Sbjct: 180 TIPMDAIYGPVLKVSYAIEPCRVGQRNDYDKLILEIWTDSTVRPEDVLGEAAKIAKDHFS 239 Query: 230 AFVDLRDVR---QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 F++ + + E E+ +L ++ L+ +VR+ NCL + I +G+L Q++E Sbjct: 240 IFINFNENDYLGEDEDDNEEAVIKQLLATSINTLDFSVRAKNCLDSAGIKTLGELAQKSE 299 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 E+ N+G+ +L EI LA L LGM Sbjct: 300 DEIESMRNVGRMTLNEIHAKLAEYNLRLGM 329 >UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Neorickettsia RepID=RPOA_NEOSM Length = 333 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 118/329 (35%), Positives = 185/329 (56%), Gaps = 14/329 (4%) Query: 2 QGSVTEFLKPRLVDIEQVSSTH-AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 +GS+ + V Q+ + A+ +EPL GFG T+GNA+RR+LLSS+ G A++ V Sbjct: 7 KGSLVDVFSSPSVVFNQIREGYCAEFIVEPLRVGFGLTIGNAMRRVLLSSLSGFAISAVG 66 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVR-VQGKDEVILTLNKSGIGPVTAADITHDG 119 I G+ HE+S GV+ED ++ LNLK + ++ + G L L+ + G V + I+ Sbjct: 67 IKGLTHEFSCIPGVREDFADLALNLKKVVLKSISGATCGNLHLSVTDGGAVFSNMISPSH 126 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI-GRLLVDACYS 178 D E+V +IC++ E S+ M +KV G GYV + + +DE + G + +DA Y+ Sbjct: 127 DFEVVNGDLLICNVA-EGVSLEMEMKVSSGFGYVSS---VSVRKDEYDLEGAVPIDAIYN 182 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 PV + + V+ DKL++ +ETNG +DP+ A+ A+ IL+ Q F+++ D Sbjct: 183 PVRAVNFTVKPTSAGSFAGHDKLILYVETNGAMDPKTAVLEASKILSTQARCFLNIADPE 242 Query: 239 Q-------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 ++ + +L +D L L+ R+ CL E I YI DLV RTE +LLK Sbjct: 243 HRVHGVPCGVSTSDRNDASDLLSARIDRLYLSARARKCLNGENIVYIRDLVSRTEADLLK 302 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 PN G++SL E+K L S+GLSLGM L++ Sbjct: 303 APNFGRRSLEEVKKELFSKGLSLGMNLDS 331 >UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Tax=Brachyspira RepID=C0QW20_BRAHW Length = 324 Score = 306 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 176/316 (55%), Gaps = 12/316 (3%) Query: 10 KPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 P V E ++ T+ K +P ERG+ T+GNALRR+LLSS+PG A+T ++IDGV +E Sbjct: 12 HPHRVTFEKKDLTPTYGKFIAQPFERGYAVTVGNALRRVLLSSIPGYAITTIKIDGVSNE 71 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADI-THDGDVEIVK 125 + G++ED + ++++LK + V + D + + K G +TA D+ D + ++ Sbjct: 72 FENVPGMKEDTIVMIMHLKNVVVSLPSHMDTKTIHMKKEGPCVITAGDLVADDTEAQVHN 131 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P + I + E + M I+++ G YVPA I ED I + +DA YSP+ + Y Sbjct: 132 PDYYIATIA-EGYTFEMDIQIEGGYSYVPAEMNIELLED---INAIAIDAIYSPIVSVKY 187 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV----RQPE 241 NV+ RV QR D KL +E+ET G I P++A+ +AA IL + L+ F+D + + E Sbjct: 188 NVDPIRVGQRIDYGKLTLEIETKGNIAPDKALSQAAKILRDNLKHFMDPEEANGDDEKIE 247 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + D + + ++++E +VR+AN L A + + + +T+ +LL+ + + Sbjct: 248 ETPKDSVLDSLKGKHIEEVEFSVRTANFLMASDLKTLDKVAVKTDADLLRLIGANEMIIE 307 Query: 302 EIKDVLASRGLSLGMR 317 EIK+ LA LGMR Sbjct: 308 EIKEKLAEYNAHLGMR 323 >UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S8_9FIRM Length = 321 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 167/316 (52%), Gaps = 8/316 (2%) Query: 4 SVTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 ++ EF + L D + EPLERGFG T+GN + R LL+S+PG + ++ Sbjct: 5 TMQEFERASLHKDFVNEENNTGSYIFEPLERGFGITIGNTICRTLLTSVPGTRIVGFKVS 64 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G + + +G+ EDI I LNLK + + G+ L ++K G + AADI VE Sbjct: 65 GFDGKATMVDGILEDIYRISLNLKAVQLYNDGEGFQTLHISKKGPATIQAADIICPEAVE 124 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P+ VIC L ++ AS+ M I G GY + S + +++DA ++P+ + Sbjct: 125 VVDPEQVICTL-EKGASLEMEIYAVTGTGYKSSIENKVS--YDFGEDVVVLDATFTPIRK 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE- 241 Y E ARV DK+ I +ET+GTI P +AI AA + E L+ + + D+ E Sbjct: 182 ADYLSEPARVGLDKKYDKVHINVETDGTITPLQAITMAAKVCMENLDEVLTVSDLELEES 241 Query: 242 ---VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 K + + + ++DL+L+VRS NCLK I + +L Q+TE E++ NLGKK Sbjct: 242 FMVQKPQVEDVKKVNTMMIEDLDLSVRSYNCLKRAGIQTVDELTQKTEDEMMHVKNLGKK 301 Query: 299 SLTEIKDVLASRGLSL 314 SL E+KD + GL Sbjct: 302 SLKEVKDKMYQLGLFF 317 >UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula RepID=RPOA_HUPLU Length = 336 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 158/328 (48%), Gaps = 28/328 (8%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 + +E +++ L PL+ G +T+G +RR LL + G +T + + + HEYS Sbjct: 19 RCVESKVESERLFYSRFILSPLKVGQANTIGLVMRRALLGEIKGTCITCAKFENITHEYS 78 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T +G+QE + +IL+N K + ++ + + ++ G VTA DI VE++ P Sbjct: 79 TMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQH 138 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I +T + +++ +K+++ GY + E G VDA ++P+ + Y++ Sbjct: 139 IATIT-KKVKLNIELKIEKDSGYRRQNIV------EYKDGNFTVDAVFTPIRSVNYSIHC 191 Query: 190 ARVEQRTDL-DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV----DLRDVRQPEVKE 244 ++ + + L+ E+ +NG+I PEEAI A+ F+ + D + ++ E Sbjct: 192 FESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGEDIHE 251 Query: 245 EKPEFDPI-------------LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + ++ LEL+ ++ N LK +H I DL+ ++ +L+K Sbjct: 252 SNALHPSVSIVVDQMAKKVTFQHIFIEQLELSPKAYNFLKKINVHTISDLLDYSQDDLMK 311 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLE 319 N GKKS+ +I + L R GMRL+ Sbjct: 312 MKNFGKKSVEQILEALQKR---FGMRLQ 336 >UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium globosum RepID=RPOA_CHAGL Length = 334 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 158/322 (49%), Gaps = 29/322 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 + IE+ + + + + PL +G +T+G ALRR LLS + G +T V+I +HEYS Sbjct: 16 RCLESKIEKSTLHYGRFIISPLWKGQANTIGLALRRTLLSEVEGTCITSVKIKNAIHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 + GVQE + +IL+NLK + + L+ G V A+D+ ++IV P Sbjct: 76 SLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVNPDQY 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I + ++ + +++I +Q+G+GY + + G LVD + P+ + Y++ + Sbjct: 136 IATV-NKPINFNLQIYIQKGKGYSLKNPISIKQ------GFFLVDPVFIPIRSVNYSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV----------------- 232 E+ T + L++E+ TNG+I+P+EAI+ A+ L V Sbjct: 189 FEDEKATK-EFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQLKNQLFKEDEK 247 Query: 233 ----DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 + + + + + ++ +D LEL+ R+ N LK I+ I DL++ + + Sbjct: 248 NKELNFIETNSNAISDNENSYNLYNQIFLDQLELSSRAYNSLKKNNINTISDLLKYSYED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASR 310 LLK N GKKS ++ + L R Sbjct: 308 LLKIKNFGKKSADQVIEQLKKR 329 >UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris RepID=RPOA_CHAVU Length = 358 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 33/333 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K IE + + + PL++G +TLG LRR LLS + G +T V+ID + HEY Sbjct: 13 KCLESKIESQRIHYGRFAIAPLKKGQANTLGITLRRTLLSDLDGICITSVKIDNIKHEYC 72 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV+E I +ILLNLK + + + G +TA+DI + +EI+ + Sbjct: 73 TLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIEILDSNQI 132 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I HLT E + + +++ G+ + S++ +DA + P+ + Y++ Sbjct: 133 IAHLT-EPIDFKVELTIEKSMGFRLQNATQISKDS------FSIDAIFMPIRNVNYSIHP 185 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 + L++E+ TNG+I P+EA +A+ + + + D + E + E Sbjct: 186 VEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKSTKNFEE 245 Query: 250 DPILLR-----------------------PVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 + ++ LEL+ R+ NCLK E I + DL+ ++ Sbjct: 246 KEEFIFQNIDGFKQDKETKVQESLGWKKISINQLELSARAYNCLKNEKISTLFDLLNYSQ 305 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 319 +LLK N GK+S ++ + L M+L Sbjct: 306 EDLLKIKNFGKRSFEQVVNALEK---HFDMKLS 335 >UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 Tax=Chlamydiales RepID=RPOA_CHLT2 Length = 377 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 121/344 (35%), Positives = 180/344 (52%), Gaps = 33/344 (9%) Query: 7 EFLKPRLVDIEQVSSTHA------KVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 +F P V + V + +PLE+G GHTLG+ALRR LL + A+ Sbjct: 12 KFELPESVKMSPVEGAVGGIDKVARFVADPLEKGMGHTLGSALRRALLIGLEAPAIVSFS 71 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVR-----------VQGKDEVILTLNKS---- 105 + GVLHEY EG+ ED+ I+LNLKG ++ K ++++ S Sbjct: 72 MTGVLHEYMAVEGIIEDVTNIVLNLKGSLLKKYPLQDCEGGRCSQKLRATISVDASDLAA 131 Query: 106 --GIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G VT D+ +G E V P+HVI +T + + ++V GRGY P+ + Sbjct: 132 AGGQKEVTLGDLLQEGTFEAVNPEHVIFTVT-RPMQLEVMLRVAFGRGYSPSERIVL--- 187 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 +ER + +++DA +SPV + Y VE RV Q TD D+LV+++ET+G + P+EA+ A I Sbjct: 188 EERGMNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLVLQVETDGRVAPKEAVAFATQI 247 Query: 224 LAEQLEAFVDLRD---VRQPEVKEEKPEFDPILLR---PVDDLELTVRSANCLKAEAIHY 277 L++ F + + V + + EK D IL + ++++EL+VRS NCL I Sbjct: 248 LSKHFSVFEKMDEKRIVFEEAISVEKENKDDILHKLVLGINEIELSVRSTNCLSNANIET 307 Query: 278 IGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 IG+LV E LL+ N GKKSL EIK+ L L LGM L + Sbjct: 308 IGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEMKLELGMDLSQF 351 >UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=Bryophyta RepID=A9CP51_PHYPA Length = 525 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 30/320 (9%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--GVLHEYSTKEGV 74 E +A+ + P +G T+GNALRR LL + G A+T G++HEY +G+ Sbjct: 209 ENDHRHYARFAVSPFRQGQAITVGNALRRALLGEVQGAAITCATFKDMGIVHEYQAVDGI 268 Query: 75 QEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 QE + +ILLN++ +A+ + ++ G V A DI + + P I L Sbjct: 269 QETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPSQNIA-LV 327 Query: 135 DENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQ 194 ++ I+V++ GY + GR +D+ + PV + Y+V + VE Sbjct: 328 TAAIPFNVEIEVEKDVGYRIVDPGKSTN------GRFYIDSVFMPVVQANYSVHSFEVED 381 Query: 195 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL 254 T + L +E+ TNG+I PEEA+ AA L + L ++ + E++ I + Sbjct: 382 VT-REILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESEVIEVTNTTEKENGSRNISM 440 Query: 255 RP-------------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 +D L+L R+ NCLK IH + DL+ T+ +L++ N Sbjct: 441 LSSFLSSSDQITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDDLMRIKNF 500 Query: 296 GKKSLTEIKDVL-ASRGLSL 314 GKKS+ E+ + L A +SL Sbjct: 501 GKKSVEEVLEALRAQFNISL 520 >UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUE9_9FIRM Length = 314 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 186/317 (58%), Gaps = 15/317 (4%) Query: 5 VTEFLKPRLVDIE-QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F KP + +E + EPLERG+G TLGN+LRR++LSS+PG A++ ++I+ Sbjct: 1 MFDFTKPNIEILEISEDKRFGRFVCEPLERGYGSTLGNSLRRMMLSSLPGAAISAIKIEN 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDVE 122 + + G+QE E+L NLK +AV + + + + ++++ SG + A D + +++ Sbjct: 61 LSGD--KVSGIQESFPELLTNLKSIAVILPEEVESLEVSVDLSGKSEILAEDFIGESELK 118 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYV--PASTRIHSEEDERPIGRLLVDACYSPV 180 + P I + + A S+ + + RG+GY A R+ + ++ + I DA Y+PV Sbjct: 119 LSNPTEHIATV-EAGAQGSISLFISRGQGYSGEKAEGRVEAPKEYQDI-----DALYTPV 172 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQ 239 ER+ ++E RV TD D+L +++ TNG++ PE+AI +AA +L + L+ FV L +V Sbjct: 173 ERVNMSIENTRVGNMTDYDRLTLDVYTNGSMSPEDAISKAAQMLFQHLDLFVALSEEVAA 232 Query: 240 PEVKEEKPEFDP--ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 E+ +KPE + ++ +D+LEL+VRS NCLK I+ + +L +T +++K NLG+ Sbjct: 233 TELMVDKPEDEKGKVMEMNIDELELSVRSYNCLKRAGINTVSELTSKTPEDMMKVRNLGR 292 Query: 298 KSLTEIKDVLASRGLSL 314 KSL E+ L L L Sbjct: 293 KSLEEVLAKLRDLNLGL 309 >UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma penetrans RepID=RPOA_MYCPE Length = 331 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 107/330 (32%), Positives = 169/330 (51%), Gaps = 24/330 (7%) Query: 5 VTEFLKPRLV--DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +FL+ + + + + +PLERGFGHTLGN+LRR+LLS++ G ++ ++I Sbjct: 1 MEKFLRYNIQIGKDQNKDADYGVFVFKPLERGFGHTLGNSLRRVLLSNIIGHSLFAIKIP 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQ----GKDEV---------ILTLNKSGIGP 109 V HE+ + +GV+ED+ +I+LNLK L V++ G++E L ++ S G Sbjct: 61 NVSHEFQSIKGVKEDLTQIILNLKRLVVKIDQEIFGEEEQKETSLEKWPTLKIDFSKGGV 120 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 + A+DI EI+ I + + M + V+ GRG+ S ++E I Sbjct: 121 LKASDIETPVGFEIINKDMYIATI-ESGVKFKMELFVKTGRGFTTFS---ENKELINAIN 176 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + VD+ +SPV ++ Y V + + D L +E+ TNG + EA+ +A IL E + Sbjct: 177 VIAVDSNFSPVLKVGYKVSDIKTTKNEINDVLELEVATNGAVSAAEAVAMSAKILLEHYK 236 Query: 230 A-----FVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 F + D+R + L +D+LEL+VRS NCLK IH I L + Sbjct: 237 PIVTELFDNYNDLRIINEEATVSSSKSSLAISIDELELSVRSYNCLKRAGIHTITQLTDK 296 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 T+ E+ K NLGKKS EI + R L L Sbjct: 297 TKGEIEKIRNLGKKSFKEIIKKIQDRNLKL 326 >UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 Tax=Embryophyta RepID=RPOA_CALFG Length = 340 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 148/331 (44%), Gaps = 32/331 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K + + + L PL +G T+G A+R+ LL + G +T + + V HEYS Sbjct: 16 KCVESRTDSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T G++E + EIL+NLK + ++ ++ G VTA DI VEIV Sbjct: 76 TIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQH 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I LT E ++ + ++++R RGY + + + G +DA PV +++ + Sbjct: 136 IASLT-EPINLCIELQIERDRGYRMKAPNNYQD------GSYPIDAVSMPVRNANHSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF---------VDLRDVRQ- 239 + L +E+ TNG++ P+EA+ A+ L + F ++L D + Sbjct: 189 YGSGNEKQ-EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNR 247 Query: 240 ---------PEVKEEKPEFDPILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 + + I L+ +D EL R+ NCLK IH + DL+ ++ + Sbjct: 248 FTVSPFTLHDRLGNIRKNKKEIALKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 319 L++ + + + +I D+L G+ L Sbjct: 308 LMRIEHFRIEDIKQILDILQK---HFGIDLP 335 >UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=Pelagophyceae RepID=C6KIM3_9STRA Length = 305 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 159/295 (53%), Gaps = 10/295 (3%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 + ++ L+ L +G G T+GN LRR+LL+ + G A+T V I+G+ +E++T GV+E Sbjct: 14 NDLGEQSSRFLLKELTQGQGLTIGNTLRRVLLTELEGTAITAVRINGINNEFATIPGVRE 73 Query: 77 DILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDE 136 D+LEILLNLK + + ++ G VTAA+I+ + ++ H I + E Sbjct: 74 DVLEILLNLKQIKFTGLVTEPFFTHVSVQGPQLVTAANISLPDGLSLLNSNHYIAAVA-E 132 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIG-RLLVDACYSPVERIAYNVEAARVEQR 195 + + +K++ G GY EE+ G L +D+ ++PV+ + Y ++ + Sbjct: 133 QTNFEIELKIESGTGY-----NFTDEENRICSGDFLSLDSIFTPVKNVNYQIKDSYKIDE 187 Query: 196 TDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR 255 + L +E+ TNG+I P +A+ +AA +L + V + +++ V E+ E + L Sbjct: 188 KITEILDLEIITNGSITPNDALNKAALVLQTLFGSLV-IDELQTNPVLPEQTETE--LDI 244 Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 +++L+L+VR+ NCLK I I DLVQ + EL N G+KS E+ + L R Sbjct: 245 LIEELQLSVRAYNCLKRVNIKTIADLVQYSVKELKDIKNFGQKSANEVVEKLQDR 299 >UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R017_PHYMT Length = 331 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 12/303 (3%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + ++ LE +G T+GN LRR+LLSS+PG + VEI GV HE+ST GV ED++ I+ Sbjct: 22 FGRFIIQNLEPSYGVTIGNPLRRVLLSSLPGAGIVYVEIKGVDHEFSTIPGVYEDVMSIV 81 Query: 83 LNLKGLAV---RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 LNLK + + + E + L +G VTA+ ++I+ P+ I +L ENAS Sbjct: 82 LNLKQVVISVDSIDDDFEQEMELFVTGKQKVTASCFEQVEGIKIINPEQEIANLVSENAS 141 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 + M + ++RG GYV A + ++ G + +D Y+PV +++Y++E + D + Sbjct: 142 LKMTVLIKRGIGYVSAEENKIYTKKKK--GLISIDTLYTPVSKVSYDIEK----KLGDKE 195 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF---DPILLRP 256 +L IE+ TN + ++A+ A+ IL + +L + + KP+ + L Sbjct: 196 ELAIEITTNKSTTAKDALTTASKILFDHFSFLANLNEKKDQISFIYKPKKELPNKSLELR 255 Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 +D LEL+VR NCLK I + DLV E E+ K +LG+KS E+K+ GL Sbjct: 256 IDQLELSVRLFNCLKKSGIEKVSDLVLLKEEEVFKLKSLGRKSFNELKEKFKQHGLEFQN 315 Query: 317 RLE 319 LE Sbjct: 316 DLE 318 >UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma gallisepticum RepID=RPOA_MYCGA Length = 325 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 107/323 (33%), Positives = 178/323 (55%), Gaps = 23/323 (7%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +FL+ + V E + K ++PLE+GFG TLGNALRR++LS +PG +V ++I G Sbjct: 1 MQQFLRYNINVIKEDNDKNYGKYIVKPLEKGFGITLGNALRRVMLSHLPGSSVFALKIKG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGIGPV 110 + HE+ GV+ED+ +I+LN+K L V + + ++T+ + G + Sbjct: 61 ISHEFGFIPGVKEDVTQIILNIKNLVVWISDNMITDETLSETPIEKWPVMTIRANKAGII 120 Query: 111 TAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 A DI E+ IC L+ E+A +++ I RGRG+ A + + + Sbjct: 121 KAGDIECPLGFEVFNKDLEICTLS-EDAEVAIDIYATRGRGFKTA---AENRSEIGSLSI 176 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + +D+ ++P+ ++ Y+VE + T DKL+IE+ TNG I +AI A+ IL++ L+ Sbjct: 177 IPIDSNFNPIIKVGYHVEEETSDVIT--DKLIIEVGTNGLIKSGDAIAIASKILSDHLKP 234 Query: 231 FVDL-RDVRQPEVKEEK--PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 +D+ + + +V EK E + L P++ L+LTVRS NCLK I + +LV R++ Sbjct: 235 LIDINKSLHDIQVLNEKNVEEKNKKLSIPIEQLDLTVRSYNCLKRHGIQTVEELVTRSKS 294 Query: 288 ELLKTPNLGKKSLTEIKDVLASR 310 E+ NLGKKS+ EI L+ Sbjct: 295 EIENIRNLGKKSVREINKKLSEL 317 >UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Tax=Mycoplasma RepID=RPOA_MYCGE Length = 328 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 24/330 (7%) Query: 5 VTEFLKPRL----VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + +FLK + + + + PLE GFG T+GNA+RR+LLS +PG +V + Sbjct: 1 MEKFLKYEIKVNNNQPTNTNPNYGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIA 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGI 107 I GV E+S EGV ED+ E++LN K L VR+ + +L + Sbjct: 61 ISGVKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLLFEDGEMIEPPLERWPVLKVTAEKK 120 Query: 108 GPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERP 167 G V A D+ E++ + L ++ +++ + V++GRG+ + + E Sbjct: 121 GAVYAKDLECPAGFEVINKDLYLFSL-QKDMKLTVSVYVKQGRGFTSF---LENRELINS 176 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 +G + DA +SPV Y V+ + ++ D L ++ TNG I +A AA IL E Sbjct: 177 LGIIATDANFSPVLHCGYEVQEVKTSKQKLTDHLTFKIATNGAIKAVDAFAMAAKILIEH 236 Query: 228 LEAFVDLRD-VRQPEVKEEKPEFDPILL--RPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 L V + + ++ + +EK E + + +++L+ TVR+ NCLK IH + +L+ + Sbjct: 237 LNPIVSVNESIKNLTIIQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSK 296 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + ++ + NLGKKS EI + GL Sbjct: 297 SLTDIREIRNLGKKSEREIIKKVQELGLKF 326 >UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Tax=Epsilonproteobacteria RepID=RPOA_ARCB4 Length = 332 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 107/327 (32%), Positives = 182/327 (55%), Gaps = 16/327 (4%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 T FL P V+IE +S AK++ P E GF TL + LRR+LLSS GCA V+I+G Sbjct: 7 TPFL-PTEVEIEAISDNEAKISAYPFEDGFAITLAHPLRRLLLSSSVGCAPIAVKIEGAS 65 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ + G+ ED+ ++NLK + ++ G K++V++ + +G + D+ + +V++V Sbjct: 66 HEFDSLRGMLEDVAIFVINLKNIKFKINGDKEQVVVEYSFNGPRDIKGEDLI-NSEVDVV 124 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 + + + + +++ + +Q+G GY+P+ D + +DA ++PV+++ Sbjct: 125 SKDAHLATI-NSDCNLTFSVILQKGIGYMPSEDI----RDIVGADYIPIDAFFTPVKKVV 179 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF---VDLRDVRQPE 241 Y++E VE + +K V ++TNG I P A + A +++ Q+ F DL +V + Sbjct: 180 YDIEKMLVEDNPNYEKAVFRVQTNGQISPVTAFKEAVSVMYSQMSVFNKVFDLSEVAVSD 239 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 EE E +++R +DDL L+ RS N L + Y+G+LV +EVE+ NLGKKS Sbjct: 240 SGEEPVELKELVIR-IDDLNLSARSFNSLDRAGLKYLGELVLMSEVEVKNIKNLGKKSYD 298 Query: 302 EIKDVLASRGLSLGMRLENWPPASIAD 328 EI + L SLG +EN P ++A Sbjct: 299 EIAEKLE----SLGYPVENTLPENVAS 321 >UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33 Tax=Francisella RepID=RPOA1_FRATN Length = 323 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 195/324 (60%), Gaps = 15/324 (4%) Query: 2 QGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S EF+ P + E + + KV L P+E+G H LGN++RR+LLSS+ G ++ +V I Sbjct: 4 NNSKQEFV-PNIQLKEDLGAFSYKVQLSPVEKGMAHILGNSIRRVLLSSLSGASIIKVNI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGD 120 VLHEYST E V+ED++EI+ NLK +A+++ D + L L+ + G V+A D Sbjct: 63 ANVLHEYSTLEDVKEDVVEIVSNLKKVAIKLDTAIDRLDLELSVNKSGVVSAGDFKTTQG 122 Query: 121 VEIVKPQHVICHLTDENA-SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 VEI+ I LT++ A S++ + V R G + A +G + VDA ++P Sbjct: 123 VEIINKDQPIATLTNQRAFSLTATVSVGRNVGILSAIPTELER-----VGDIAVDADFNP 177 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 ++R+A+ V D + L + ++TNGTI+P A+ +A EQ+ FV LR Sbjct: 178 IKRVAFEV-----FDNGDSETLEVFVKTNGTIEPLAAVTKALEYFCEQISVFVSLRVPSN 232 Query: 240 PEVKE--EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + + DPILL+P+DDLELTVRS+NCL+AE I Y+GDLVQ +E +L+K PNLGK Sbjct: 233 GKTGDVLIDSNIDPILLKPIDDLELTVRSSNCLRAENIKYLGDLVQYSESQLMKIPNLGK 292 Query: 298 KSLTEIKDVLASRGLSLGMRLENW 321 KSL EIK +L LSLG++++N+ Sbjct: 293 KSLNEIKQILIDNNLSLGVQIDNF 316 >UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 Tax=Epsilonproteobacteria RepID=RPOA_HELPJ Length = 344 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 162/322 (50%), Gaps = 18/322 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L P + + + K++L P E G+ TL + +RR+LL S G A ++I+GV HE+ Sbjct: 9 LIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEGVHHEF 68 Query: 69 STKEGVQEDILEILLNLKGLAV---------RVQGKDEVILTLNKSGIGPVTAADITHDG 119 + GV ED+ ++NLK + V++ + G + A D+ D Sbjct: 69 DSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGPMELRARDLNSD- 127 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 +EIV P+ + + +E+A ++ + + +G GYVP+ + + P G + +D ++P Sbjct: 128 HIEIVNPEMPLATI-NEDAQLNFSLIIYKGMGYVPSE----NTRELMPEGYMPLDGSFTP 182 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 ++ + Y +E VE + +K++ ++ET+G IDP +A A ++++QL F + R + Sbjct: 183 IKNVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGE-RPIAN 241 Query: 240 PEVKEEKPEFDPILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 E + + D ++ + L+ R NCL I Y+G+LV +E EL N+GK Sbjct: 242 TEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGK 301 Query: 298 KSLTEIKDVLASRGLSLGMRLE 319 KS EI + L G +G L Sbjct: 302 KSYDEIAEKLNDLGYPVGTELS 323 >UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 Tax=Ureaplasma RepID=RPOA_UREPA Length = 327 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 116/328 (35%), Positives = 168/328 (51%), Gaps = 22/328 (6%) Query: 5 VTEFLKPRL--VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +FLK +L I V + PLE GFG TLGNALRRI LSS+PG ++ V+ Sbjct: 1 MRKFLKYQLDVPSINSEDKNRTVVKIAPLEIGFGDTLGNALRRICLSSIPGASMFAVKFG 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGIGP 109 G HE+ EGV+EDI I+LNLK LA+++ + +N G G Sbjct: 61 GYSHEFQPYEGVKEDITHIILNLKNLAIKIDELIYSEDYFNNLLIDKWPKMKINFKGPGV 120 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 +TA DI EIV I +T + + + I + GRG V +T +++ + Sbjct: 121 ITAKDIVCPVGFEIVNQDLYIAEVT-KPIDVEIEIFAKTGRGRVDFNT---NKDFVSTLH 176 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + D+ YSPV AYNVE + + + + L I++ TNGTI EAI AA I+ LE Sbjct: 177 IIATDSNYSPVLHYAYNVEMIKDSKSSMSEILTIDIATNGTISGSEAIAIAAKIMQAHLE 236 Query: 230 AFVDLR---DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 V++ + + E+ E +DDL+LTVR+ N LK I+ +L++ T+ Sbjct: 237 PIVNIDKTINEMIIMREREEEEKRQNASISIDDLDLTVRAYNALKQSGINTTAELIELTK 296 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSL 314 +L K NLG+KS+TEI L R L L Sbjct: 297 SQLEKIKNLGRKSVTEIIQKLTERSLEL 324 >UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Candidatus Sulcia muelleri RepID=C7LKJ3_SULMS Length = 349 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 181/340 (53%), Gaps = 31/340 (9%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F K + + ++++ +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV Sbjct: 4 LKFTKKENLRVLKLTNYEGHFKIEPLYPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVD 63 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILT---------------LNKSGIGPV 110 HE++T +GV+ED+ EILLNLK + + + + E + K+ + Sbjct: 64 HEFATIKGVKEDMTEILLNLKKIRFKKKMEMEEEEEEEEEEEEEEGEKFNIIIKNEKEEI 123 Query: 111 TAADI-THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 TA D+ + EI+ P +I + + +++ I +++G GYVP+ +E+ G Sbjct: 124 TAGDLGEYIHLFEIINPDLIILN-KKKFIYLNITIVIKKGIGYVPSE---ENEKHINTNG 179 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +D+ ++P++++ Y +E V + + ++L E++T+GTI+P++A+ +A+ ++ L+ Sbjct: 180 TISMDSIFTPIKKVKYTIENCSVSKNSTYERLFFEIKTDGTINPKDALIKASNLVIRHLK 239 Query: 230 AFVDLR--------DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 + + ++ + E + IL ++ L+VR+ NCLK I GDL Sbjct: 240 LLSNKKISLNYNKKYKKKKQTNENYLKLRNILNSSLERKNLSVRTLNCLKKAKIFTWGDL 299 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 ++ LGKKSL E+ ++ + GM LE++ Sbjct: 300 IKSNPT---NFKYLGKKSLEELDLIMKKLTIYYGMNLEDY 336 >UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 Tax=Euphyllophyta RepID=RPOA_ARATH Length = 329 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 29/322 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K + + + L PL +G T+G A+RR LL + G +T + + + H+YS Sbjct: 16 KCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 G+QE + EIL+NL + +R + G G +TA DI VEI+ Sbjct: 76 NIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQH 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I LT E + + +K++R RGY + +DA + PVE +++ + Sbjct: 136 IATLT-EPIDLCIELKIERNRGYSL------KMSNNFEDRSYPIDAVFMPVENANHSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---------- 239 + L +E+ TNG++ P+EA+ +A+ L F+ + + Sbjct: 189 YGNGNEKQ-EILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 247 Query: 240 -----------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 K++K + +D LEL R NCLK IH + DL+ ++ + Sbjct: 248 LPFFPFHNRLVNLRKKKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASR 310 L+K + + + +I D+L + Sbjct: 308 LIKIEHFHVEDVKKILDILEKK 329 >UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Helicobacter RepID=C5F0M8_9HELI Length = 329 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 162/313 (51%), Gaps = 9/313 (2%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 P +++ + + ++T P E G+ TL + LRR+LL S G A + I GV HE+ + Sbjct: 11 PTKIEVRETGNNKVQITAYPFENGYAITLAHPLRRLLLGSSVGFAPIALRISGVAHEFDS 70 Query: 71 KEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 GV ED+ + ++NLK + R+ D V + +G +T AD++++ VE+V P Sbjct: 71 VRGVVEDVSQFIVNLKAIRFRIKDNSDNVSVDYKFNGSKVITGADLSNEL-VEVVTPDIH 129 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 + + +E+A+++ I + +G GYVP+ S P G + +DA ++PV Y E Sbjct: 130 LATI-NEDATLAFSIIIYKGIGYVPSEEIRAS----VPEGFMPLDAYFTPVTSATYTTEN 184 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 +E + +K++ +++T+G +DP A + A +++ +Q+ F ++ PE + E Sbjct: 185 MLLEDDPNYEKIIFDIQTDGQVDPLTAFKNALSVMHKQMSIFNSELNIEMPETTVSEEER 244 Query: 250 DP--ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 307 +L + +D L + R NCL I Y+G+LV E ++ NLGKKSL EI L Sbjct: 245 PELKVLSQTIDSLNFSARCFNCLDRSGIRYLGELVLLNEDQIKNIKNLGKKSLDEITAKL 304 Query: 308 ASRGLSLGMRLEN 320 G + + Sbjct: 305 DELGYPVNREIPE 317 >UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 Tax=Campylobacterales RepID=RPOA_CAMJD Length = 337 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 8/318 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ P IE +S T AK++ P E G+G TL + LRR+L +S G A T + Sbjct: 1 MRNITISAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLRRLLYTSTVGYAPTAIH 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDG 119 IDGV HE+ + G+ ED+ ++NLK L +++ ++ I+ + G + D+ +D Sbjct: 61 IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKSDSNKEIVEFSFKGSKEIYGKDLNND- 119 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 VE+V + + +E+A + + V++G GY+P+ D + + +DA ++P Sbjct: 120 QVEVVNKDAYLATI-NEDAELEFTLIVEKGIGYIPSEEIKEFLNDPK---FIALDAFFTP 175 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 V Y++E E D +K+V+ + T+G I P EA + A + +QL F + +VR Sbjct: 176 VREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDKITNVRS 235 Query: 240 --PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + LL+ + DL L+ RS NCL+ + YIG+L + EL NLGK Sbjct: 236 VIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYIGELALMSVSELAGLKNLGK 295 Query: 298 KSLTEIKDVLASRGLSLG 315 KSL EIK+++ + G +G Sbjct: 296 KSLDEIKNIMENIGFPVG 313 >UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima RepID=RPOA_SPIMX Length = 344 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 41/325 (12%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + PL G TLG A+RR LL S+ G A+ +I G HEYST EG+QE I +IL Sbjct: 31 YMLFIASPLLAGQATTLGVAIRRTLLESIQGTAIVAAKIYGAAHEYSTLEGIQESIHDIL 90 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLK + ++ + + ++ G VTAADI ++ I P H I +T + + Sbjct: 91 LNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIATIT-KPIRFQV 149 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + + +GRGY+ ++ G VDA ++PV + +++ +Q + L+ Sbjct: 150 ELIINKGRGYLIQDG------NDVQDGYFPVDALFNPVRNVNFSIHNLAEQQ----EALI 199 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD-------------------------- 236 +E+ TNG I P +A+R+ + L L D Sbjct: 200 LEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTYMTSLGSQDYNIHIKNSLKEKFEL 259 Query: 237 ---VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 R + K +F P++ LEL+ R CLK I+ I DL++ ++ +LLK Sbjct: 260 HSIERIEDSHLIKDQFLEYSKTPIELLELSTRPFKCLKNANIYTINDLLKLSQQDLLKIS 319 Query: 294 NLGKKSLTEIKDVLAS-RGLSLGMR 317 N+G S+ +I + L G++L ++ Sbjct: 320 NMGPSSVKQIVEALDKRFGINLKLK 344 >UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas RepID=C1KR47_9CHLO Length = 352 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 143/342 (41%), Gaps = 41/342 (11%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L+ +A++ L PL G G TLGN RR+LL+ +PG A+T +++ E+ Sbjct: 12 LECVEFRENNPRDHYARLVLGPLAPGQGVTLGNTFRRLLLNDLPGVAITAAKLNETRTEF 71 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKD----EVILTL----------NKSGIGPVTAAD 114 T G++E ++EI LNL+ + D + +T+ + + A D Sbjct: 72 MTLPGIRESVVEIFLNLRDIVFFNTFPDVLAPQGTITISPRPQTDESKSFHTPRVICAGD 131 Query: 115 ITHDGDVEIVKPQHVICHLTDENASISMRIKVQR--------------GRGYVPASTRIH 160 + + V P I L + + + ++ +++ G G+ P+ Sbjct: 132 MQLPEGITCVDPTQPIATLMNGDTAFNLTFILEQSTGYRVWKKPTQSYGTGFYPSPQIES 191 Query: 161 SEEDERPIGRL-LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRR 219 + ++ G +D + PV+ + + V + + + E+ TNG+I P A + Sbjct: 192 VQIEQVKSGVFQPIDGNFMPVKNVNFAVHEV----QPHGEYIHFEITTNGSIHPHNAFKH 247 Query: 220 AATILAEQL-------EAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKA 272 A IL E V + + P V + ++ LEL++R+ NCLK Sbjct: 248 AGAILTEITRATLQDPRPVVGIDEASTP-VDTAVAQKAYFENIAIEQLELSLRAYNCLKR 306 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 I + DL + + LL N G+KS E+ L + G+ L Sbjct: 307 AQILTLADLSRESYSSLLALRNFGQKSAEEVAKALETYGIEL 348 >UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ostreococcus tauri RepID=RPOA_OSTTA Length = 356 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 56/354 (15%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 LK ++ + +++ P+ G G T+GN LRRILL+ +PG V EI+GV E+ Sbjct: 8 LKSLQYRQNSLTDCYGRLSFGPVNPGQGLTIGNTLRRILLNDLPGIGVIGAEINGVQSEF 67 Query: 69 STKEGVQEDILEILLNLKGLAVR---------VQGKDEVILTLNK-----SGIGPVTAAD 114 ST G++E ++EI LNL+ L Q K V LN + VTA D Sbjct: 68 STLPGIRESVIEIFLNLRELIFTPTATCAQKVKQTKPFVYAKLNSELKIDNFPYVVTAKD 127 Query: 115 ITHDGDVEIVKPQHVICHLTDENA--SISMRIKVQRGRGYVP--------------ASTR 158 + + E V P I + A + + + + +GRGY + Sbjct: 128 LHIP-EYEFVDPNQQIATILSPTAAENFKLTLLIGQGRGYQSWKKLPGVPQLMDQRFFEQ 186 Query: 159 IHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR 218 S + +DA + P+ ++ + V+ V D + + E+ TNG+I+P +A++ Sbjct: 187 FDSTQTNSKSVTFPIDAIFMPIRQVNFTVQEHSV----DGEYIYFEVWTNGSINPFDAVK 242 Query: 219 RAATI--------LAEQLEAFVDLRDVRQPEV----------KEEKPEFDPILLRPVDDL 260 AA + L + V L + + PE E + FD I ++ L Sbjct: 243 SAAKVGMKLMTACLTTLQDQQVYLDESKLPETPNFVQVNYNKMESESNFDQIF---IEQL 299 Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 EL++R+ NCLK I + DL Q++ +L+K N G+KS E++ L++ G+ L Sbjct: 300 ELSLRAYNCLKRANILTLADLSQQSFRDLMKLRNFGQKSADEVRAALSTYGIEL 353 >UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20 Tax=Francisella RepID=RPOA2_FRAT1 Length = 318 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 188/324 (58%), Gaps = 11/324 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-D 62 ++ L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I D Sbjct: 2 ALENLLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKIND 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDV 121 G + E + +I+LN+K L V + +G + +T SG ++ + Sbjct: 62 GKVTSLEDVIPCDETVADIILNVKSLPVTLAEGVETGTITFELSGSEEEIFSEEAKLSEG 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 + + IC + + + KV++G G+ PA +D G L+DA +SPV Sbjct: 122 LAITEEVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVV 173 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-RQP 240 + ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL +D+ ++ + Sbjct: 174 FCDFEIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNILDIEEINKGI 233 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 V++ + +PILL+ V++L LT RS+NCLKA I IG+LVQ+TE ELLK PN GKKSL Sbjct: 234 FVEDPTKDINPILLKHVEELNLTARSSNCLKAVNIRLIGELVQKTENELLKAPNFGKKSL 293 Query: 301 TEIKDVLASRGLSLGMRLENWPPA 324 TEIKD L+ GLSLG +ENWP Sbjct: 294 TEIKDKLSELGLSLGTLIENWPQD 317 >UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFY9_MYCFE Length = 339 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 159/329 (48%), Gaps = 19/329 (5%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +T+ ++ + +S TL+PLERG G TLG ALRRILLS++ A+ ++I+ V Sbjct: 6 MTKLEYQKVTKLNNSTSNVTAFTLQPLERGMGQTLGVALRRILLSNITSLALFAIKIEDV 65 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADIT-HD 118 HE+ +G ED+ I++NL+ + + + + +TL G VT+ + ++ Sbjct: 66 NHEFQVVDGCVEDVATIIMNLRKVKFQYNPEFVKDDEIIKVTLKADQPGEVTSRLLEVNN 125 Query: 119 GDVEIVKPQHVICHLT-DENASISMRIKVQRGRGYVPASTR----------IHSEEDERP 167 +EI+ I HL+ + +++ + ++ GRG++ E + Sbjct: 126 SSIEILNKSLEIAHLSANGKHKLNIELYLRPGRGFISNEENKKLLNNSSITTRMESKIKN 185 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 + D+ +SP+E++ Y VE ++L +T+GT+DP+ A+++A IL Sbjct: 186 GIFIATDSNFSPIEKVNYTVEELNSSSNKIEERLTFSFQTDGTVDPKSALQQACEILVGH 245 Query: 228 LEAFVDLRDVRQPEVKEEKPEFDPILLRPVD--DLELTVRSANCLKAEAIHYIGDLVQRT 285 + ++ +++ EE + VD L L+VRS N LK I + + + Sbjct: 246 FKLIGNVDEMKVNVFAEESEQTQETNDNDVDINSLNLSVRSLNALKRIGKTKISQVAEMS 305 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 EL + NLG+KSL EI+ L G L Sbjct: 306 LEELEQVKNLGRKSLDEIQQRLKEYGYEL 334 >UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCH7 Length = 332 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 18/319 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + +EQV+ ++PLERG G+TLGNALRR +LSS+P CAV V+I+G+ HE+ Sbjct: 7 VYYSENLVEQVNEFETSFEIKPLERGLGNTLGNALRRTVLSSIPSCAVFGVKIEGIKHEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNK-----SGIGPVTAADITHDGDVEI 123 + + V ED++ IL NLK + +++ G + A DI ++I Sbjct: 67 TVLDDVIEDVVTILNNLKRVRFFYNPSVFSQNSIHVASFLGQKAGQIYARDIESHSGLKI 126 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTR-------IHSEEDERPIGRLLVDAC 176 V P I ++ A + + + G+G+V T I E + L VD+ Sbjct: 127 VNPDLYIADVSKVGA-LKFELFITNGKGFVDFETNKKYVNEVISRLESQIEGSVLAVDSD 185 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 +SPV Y +KL ++T+G+I ++A+ + A IL L D+ + Sbjct: 186 FSPVLNANYQAVEINSASPIIEEKLNFSIKTDGSIFAKDALSQGAKILIAHLNLLADVEN 245 Query: 237 VRQPEV-----KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + + +E K E +D L+L+VRS N L+ + I D+ + ++ + Sbjct: 246 LNKFSADFFGDQEIKEEPIRRFSNSIDALDLSVRSLNALRRAQYYKISDIEKLSQDDFEN 305 Query: 292 TPNLGKKSLTEIKDVLASR 310 NLG+KS+ EI + L + Sbjct: 306 IKNLGRKSVQEIMEKLQNY 324 >UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CGQ3_9PLAN Length = 208 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 92/211 (43%), Positives = 130/211 (61%), Gaps = 4/211 (1%) Query: 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDIL 79 +ST+ EP ERGFG T+ N+LRRILLSS+ G +VT V+I GV HE++T GV EDI Sbjct: 2 TSTYGMFVAEPFERGFGATIANSLRRILLSSLEGSSVTRVKIQGVQHEFTTIPGVVEDIT 61 Query: 80 EILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 EI LNLK L V+ L + K G VT AD+ D VE++ VI +TD + Sbjct: 62 EICLNLKSLIVKNSSSTSKTLRIEKHERGVVTGADVITDDQVEVINKDLVIATMTD-DVP 120 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 ++M + ++ GRGY PAS + + +G + +DA +SPV R+ Y +E RV QRT+ D Sbjct: 121 LNMELTIENGRGYSPASEHAQHDSE---VGVIPLDATFSPVVRVRYKIEDTRVGQRTNYD 177 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 KL++E+ TNGT+ P+ A+ A+ IL + L Sbjct: 178 KLILEIWTNGTVKPDMALVEASKILRKHLNP 208 >UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema circumcarinatum RepID=RPOA_ZYGCR Length = 356 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 153/352 (43%), Gaps = 54/352 (15%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K +I+ + + + PL G T+G A+RR LL + +T + G HEYS Sbjct: 13 KCLNHEIQNARLHYGRFAVYPLFPGQAITIGTAIRRALLGEVHSTCITSAYVVGASHEYS 72 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T +G++E I +ILLNLK + + + L +G G VTA I V++V Sbjct: 73 TLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVDNTQY 132 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I L + SI + I ++ + +T ++ GR ++DA PV + Y++ + Sbjct: 133 IARL-EMPTSIEIHITLENTKTCTSLNTMPTTK------GRFILDAALKPVRNMNYSIHS 185 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-DVRQPEVKEEKPE 248 + LV+E+ TNG++ P+E I +A+ L + L+ + + + + +K Sbjct: 186 LGEGDMRQ-EMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKVERYFQAKQNIHKKRM 244 Query: 249 FDPILLR--------------------------------------------PVDDLELTV 264 F P +DDL+++V Sbjct: 245 FTPTQSENLNMDQIEMIGGNKLIDQPLLPADSHLNSSLSLNIDNLVHLEGISIDDLQISV 304 Query: 265 RSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL-ASRGLSLG 315 R++NCLK I+ I L+ T+ +L + NLGKKS+ +I + S G LG Sbjct: 305 RASNCLKKVGIYTIRQLLSYTQQDLFQIKNLGKKSVEQIVIAIRKSYGHILG 356 >UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalpha subunit) (Transcriptase alpha chain) (RNApolymerase alpha subunit) n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IYV9_MYCAP Length = 336 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 157/317 (49%), Gaps = 21/317 (6%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + +L+PLERGF +T+ ALRR+LLS++ A+ ++I GV HE+ T G+ ED Sbjct: 18 NNNLNEVTFSLKPLERGFANTVAVALRRVLLSNITSLALFAIKISGVSHEFQTIPGIVED 77 Query: 78 ILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADIT-HDGDVEIVKPQHVIC 131 + I++NL+ + + + + + T+ G VT+ I + VEI+ I Sbjct: 78 VTAIIMNLRKVKFKYNPEFVKDGEIIKATIKAEQPGVVTSKSIEISNPSVEIINKSQEIA 137 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHS-----------EEDERPIGRLLVDACYSPV 180 ++ + ++ + + ++ GRG++ + E + + + VD+ +SPV Sbjct: 138 NI--QKGALVIELFLRPGRGFISNESNKKFIQNDSLFASKIESNIKKGLFIAVDSNFSPV 195 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 E+ +Y V+ ++L+ ++T+GT+D + AI +A IL D+ ++ Sbjct: 196 EKCSYTVKELNTSSNKIEEELLFTIKTDGTVDAKSAINQACKILVAHFMTVGDVDAMKID 255 Query: 241 EVKEEKPEFDPILLRPVD--DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 +EEK D + VD L L+VRS N LK ++ T EL +T NLG+K Sbjct: 256 VFEEEKINNDEPIENDVDINQLGLSVRSLNALKRIGKTKASEVAAMTWEELEQTKNLGRK 315 Query: 299 SLTEIKDVLASRGLSLG 315 SL EI++ L G +L Sbjct: 316 SLDEIQECLKLNGFTLN 332 >UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimonas parkeae RepID=C0JX08_9CHLO Length = 351 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 152/325 (46%), Gaps = 34/325 (10%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VL 65 + +Q +A L P G G T+ N LRR LL+++ G +T V+ + + Sbjct: 39 ETDQELLLYALFQLGPFSHGQGLTIANGLRRTLLNNIIGFGITSVKFEPKWVDISKEVFI 98 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADITHDGD 120 HEYST G+ E I EI+ NLK + +R + ++ ++ + + G + A I Sbjct: 99 HEYSTIPGIWESIFEIIENLKKIKIRRENSPFEPFEKQVIRITQDKPGVLRADSIKLPPF 158 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 ++I+ I + N + + I ++ G + + + V P+ Sbjct: 159 LKILNQNQPIVSMMSSNLILDIIITIEAQTGNHLCNNQ-----------FIHVSEVCLPI 207 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF------VDL 234 + + Y ++ + + L E+ T+GTI P+EA+ +AA I + F +++ Sbjct: 208 KWVNYVIKTDPLLGSKSPESLFFEISTDGTITPQEALSKAADICIDLYSCFSTAQKELEV 267 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 + + + +V EE E +++L L+VR+ NCLK I+ + DL+ +++ +LL N Sbjct: 268 KSIVKEKVTEEVKEEIITNKVTIENLGLSVRAYNCLKRANIYTVTDLLTKSKSDLLAMKN 327 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE 319 GKKS E+ + L +R LG+ L Sbjct: 328 FGKKSADEVYEALQNR---LGIDLP 349 >UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma mobile RepID=RPOA_MYCMO Length = 333 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 148/329 (44%), Gaps = 20/329 (6%) Query: 5 VTEFLKP--RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +F+K ++++ ++PLE+G TLG A+RR+LLSS+ A V+I Sbjct: 1 MEKFIKINWTENKTKRINDFSTSFIVQPLEKGLATTLGTAIRRVLLSSISSVAPFAVKIK 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNK------SGIGPVTAADIT 116 GV HE+ V ED+ +ILL L+ + + + + K G + A D Sbjct: 61 GVEHEFMAINKVTEDVPQILLRLRDIKIAYNPEIFEDGKIYKLSLKSNKEAGDIYAKDFI 120 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPAST--------RIHSEEDERPI 168 EIV P +I N + + + V+ GRGYV + + Sbjct: 121 LPIGAEIVNPGLLIATTAAANV-LEIDVFVRAGRGYVDFEENKKYIDEIKTNLTSSISNG 179 Query: 169 GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + VD+ +SP+E+++++ +KL +E+ T GTID + AI +AA IL L Sbjct: 180 QYIAVDSNFSPIEKVSFSSSELNTSSVIVQEKLEMEIVTKGTIDAKNAIAQAAKILVAHL 239 Query: 229 EAFVDLRDVRQPEVKEE---KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 D+ + ++ EE + E + L+L++RS N LK + L + Sbjct: 240 NIIGDVNSLNIKDIFEEGNTEKEHSKTQNILIQSLDLSIRSFNALKRANYTTVQQLEALS 299 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +L NLG+KS+ EI + L + L Sbjct: 300 LDDLKNIKNLGEKSINEIVEKLEKYNVFL 328 >UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI Length = 340 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 79/329 (24%), Positives = 147/329 (44%), Gaps = 23/329 (6%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--VLHE 67 K +E S + + +L PL RG G T+G+ALRR LL + G VT V+ V H Sbjct: 16 KCLEYRVESKRSHYGRFSLSPLLRGQGGTIGSALRRTLLRDVEGTNVTHVKFFNKRVKHL 75 Query: 68 YS--TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 +S T G++E + +I++NL+ + R + + G VTA DI ++IV Sbjct: 76 FSSSTILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVD 135 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I +T + + + +K+++ G S ++ R + + Y PV + Y Sbjct: 136 GTQHIASIT-KPIHLHVTLKIEKNWGETTESIHPITKYFTR---YIPTEIFYMPVRSVTY 191 Query: 186 NVEAARVEQRT-DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL---------- 234 NV + E D L+ E+ TNG + P+EA+ A L + + +D+ Sbjct: 192 NVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDVPLLHVEGSGV 251 Query: 235 -RDVRQPEVKEEKPEFDPILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + P V + + ++ +D L L + + L+ I+ + D + ++ +L Sbjct: 252 KESIPLPIVSNMNRTQEDLFVQHLFIDQLGLPSKISKSLRESHIYRVSDFMNYSQQDLKN 311 Query: 292 TPNLGKKSLTEIKDVLASR-GLSLGMRLE 319 K+S+ + ++L G++L +R + Sbjct: 312 LEYSKKESIEQTLEILHKYFGINLTLRKD 340 >UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum punctulatum RepID=RPOA_STAPU Length = 383 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 148/368 (40%), Gaps = 79/368 (21%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 +++ L PL T+G A+RR LLS + G ++ I G +HEYST +GV+E Sbjct: 24 NRRLHYSRFALSPLLVDQAMTIGVAIRRALLSEVEGISIISANIVGAVHEYSTLDGVRES 83 Query: 78 ILEILLNLKGLAVRVQ--------GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 + EILLNLK + ++ E ++ G G VTA I + V P Sbjct: 84 VDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGVVTAEHIKFPSSILAVDPDQS 143 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I L +E + + + +++G A ++++ + +DA ++PV++ +++ + Sbjct: 144 IATLLNE-TQLCIELFIRQGI----AKQLTRTKKNHQG---FFIDANFTPVQKANFSIHS 195 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE----AFVDLRDVRQPEVKEE 245 + + L++E+ TN T+ P EA+ +A L + + + Sbjct: 196 VG-DPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFHQISPPLLHKELSPSKNILNQ 254 Query: 246 KPEFDPI----------------------------------------LLRPVD------- 258 + + + +D Sbjct: 255 NSDSNSLGGSSFGRVVSLETRRDSTQTNNSSIPKEIQPSVRLKSYTDTNLSIDKQMNDSV 314 Query: 259 --------DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 +LEL+ R +NCLK I+ I DL+ T+ +LLK N G+KS+ ++ VL R Sbjct: 315 NKENLSIDELELSPRISNCLKKANINTIADLLNYTQEDLLKIKNFGRKSVEQVSLVLRKR 374 Query: 311 GLSLGMRL 318 M L Sbjct: 375 ---FNMEL 379 >UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=Fucus vesiculosus RepID=D1GJR1_FUCVE Length = 368 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 158/364 (43%), Gaps = 63/364 (17%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 ++ K +D+ + + LE+ G+T+GN LRR LLS++ G + V G+ Sbjct: 3 MSSKCKCVDLDLLNTNEFYGHFVFTALEKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAGI 62 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVE 122 +E++ EGV+ED+ EI+LNLK + + L G +TA + +V+ Sbjct: 63 NNEFALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNVK 122 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ P + + ++DE+ I + +K++ G+ Y+ A ++ E + + +D+ ++PV + Sbjct: 123 ILNPNNHLLTISDESL-IEIEVKIEAGKSYILAK----DQKLEGALDFIPIDSNFAPVLK 177 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA-----FVDLRDV 237 + + + + + + ++L +E+ TNGT+ P +A+ +A T++ L F L Sbjct: 178 VNWYIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYMLSPISTIEFSCLDTY 237 Query: 238 RQPEVKE----------------------------------EKPEFDPILLRPVDD---- 259 + E+ + EK D I +D+ Sbjct: 238 EKEEIHDTNHIKSLTYITDPISRDQNKTVLRSNLIKNKSKFEKINLDKINQVSIDEQKLI 297 Query: 260 -------------LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 L L+ R N L I++I DL+ L+ LG KS+ EIK+ Sbjct: 298 KNIVDLEYESLKNLGLSNRIINALNKVNINFISDLIHYPSSSLINIVGLGPKSVEEIKNK 357 Query: 307 LASR 310 L Sbjct: 358 LNQF 361 >UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Fragment) n=3 Tax=Streptococcus RepID=Q3D5K7_STRAG Length = 212 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 130/215 (60%), Gaps = 7/215 (3%) Query: 106 GIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDE 165 G +TA DI D D+EIV P H + + E S+ + V + RGYVPA +++D+ Sbjct: 1 GPAEITAGDILTDSDIEIVNPDHYLFTIA-EGHSLKATMTVAKNRGYVPAEG---NKKDD 56 Query: 166 RPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILA 225 P+G L VD+ Y+PV+++ Y VE ARV DKL IE+ TNGTI PE+A+ +A +L Sbjct: 57 APVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIMTNGTIIPEDALGLSARVLI 116 Query: 226 EQLEAFVDLRDVRQPEV---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV 282 E L F DL +V + + EK + +L R +++L+L+VRS NCLK I+ + DL Sbjct: 117 EHLNLFTDLTEVAKATEVMKETEKVNDEKVLDRTIEELDLSVRSYNCLKRAGINTVXDLT 176 Query: 283 QRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 ++TE E++K NLG+KSL E+K LA GL L Sbjct: 177 EKTEPEMMKVRNLGRKSLEEVKIKLADLGLGLKND 211 >UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCSP Length = 353 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 155/314 (49%), Gaps = 17/314 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + + + E+V+ + +EPL RG+ +T+G LRR LLSS+ A ++I+ V HE+ Sbjct: 7 ITYKELVAEKVNDFNTTFVIEPLARGYANTMGTVLRRTLLSSITSVAPFAIKINNVEHEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDE-----VILTLNKSGIGPVTAADITHDGDVEI 123 T G++ED + ++ N++ + + ++ + G + A+DI +EI Sbjct: 67 QTISGLKEDAITLVRNIRNIRFVYNEEIFEKENLAKISFKTNKEGEIFASDIPEVSGLEI 126 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHS--------EEDERPIGRLLVDA 175 V I ++ + S+ + +++GRG++ + E + L +D+ Sbjct: 127 VNKDQYIANIA-KGGSLEFDLFLRKGRGFIDFEENKNVISQYGSRLESSIKNGQFLAMDS 185 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 +SPV++ A + E + ++L I++ET+ T+ +EAI +AA I+ + ++ Sbjct: 186 DFSPVKKCAISFEELNSSSKLIEERLKIKIETDCTVSAKEAIEQAAKIIVAHFQIIGNIN 245 Query: 236 DVRQP---EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + E +EK E + P+ L L+VRS N L+ + + +++ ++ EL Sbjct: 246 ALETIELFEENKEKKEREIKSTTPITKLGLSVRSENALRRAKYNTVEEVLGLSDEELSNI 305 Query: 293 PNLGKKSLTEIKDV 306 NLGKKS+ +I + Sbjct: 306 KNLGKKSIQDIIEK 319 >UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y960_COPPD Length = 319 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 AK+++ L G G TLGNALRR+LL + G V ++G+ HE+ EGV ED L I L Sbjct: 25 AKLSVLNLPEGEGITLGNALRRVLLGQIGGTGVLGFRLEGLDHEFMVPEGVVEDGLTIGL 84 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK + + G +L + G + AADI D DVE+ I ++ + I M Sbjct: 85 NLKKVLFKYYGDGVKVLYIKAKGPAEIKAADIVPDADVEVFNLDQTILTVST-DREIYME 143 Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVI 203 I + G GY + + P + +D +SPV R Y+V A V++ + L + Sbjct: 144 IYLTNGVGYRTVEDN--KKLYQFPFRTIYLDTSFSPVRRAEYHVTPAIVDEPGTFESLEL 201 Query: 204 EMETNGTIDPEEAIRRAATILAEQLE-AFVDLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 + TN +DP E IR+AA L+E+ V EE+ D L V+ L L Sbjct: 202 IVYTNLAVDPVEVIRQAANFLSEEFRKVAEAKEAAAGEVVVEEQAISDEKLDASVEMLNL 261 Query: 263 TVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + L+ I+ I DLV E P +G L EI++ LA+ Sbjct: 262 SRAVLTHLEKANINTIRDLVDVLEHN-ESIPGIGAVRLEEIRNKLAAY 308 >UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma pulmonis RepID=RPOA_MYCPU Length = 333 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 18/324 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +K + V ++V+ +EPLERGFG T+G ALRR LLSS+ ++I V E+ Sbjct: 7 IKYKEVKTKRVNDYETTFKIEPLERGFGSTIGTALRRTLLSSITSVVPFAIKIKDVDQEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADITHD--GDVE 122 T + ED+ I+LN+K + + +++ + ++ +T++D+ ++E Sbjct: 67 DTISDIVEDVQMIMLNVKNIHLVYDENIFEDNKIYRGVIETKNEKITSSDLKFPENPEIE 126 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI--------GRLLVD 174 IV I + M + GRGY+ E++ + L +D Sbjct: 127 IVNKDLEIAT-NNGQKPFVMEVYFHVGRGYISFEDNKKLIEEKVALLNSTIKRGKFLAID 185 Query: 175 ACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234 + +SPVE++ V+ ++L IE++T GTID + + +AA IL L+ D+ Sbjct: 186 SDFSPVEKVKVKVQEINSSSLNIEEELEIEIKTKGTIDTKNILSQAAQILIAHLQVIGDV 245 Query: 235 RDVRQPEVKEEKPEFD---PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 +++ +V E+K + I + L+L+VRS N LK + + D++ TE +L+ Sbjct: 246 KNLDAVDVFEQKKQEKVEPSIHSVDITSLDLSVRSINALKRQGYTKLADILTLTEDDLVA 305 Query: 292 TPNLGKKSLTEIKDVLASRGLSLG 315 NLGKKS+ EI L ++L Sbjct: 306 VKNLGKKSVEEIIQKLKEYNVTLN 329 >UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEL8_PEDMN Length = 365 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 147/364 (40%), Gaps = 61/364 (16%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ +EQ +S +++ + P + G T+ N+LRR LLS G + VEIDG +HE Sbjct: 6 FVSCLESRMEQETSWYSRFEIGPFQAGQALTVANSLRRTLLSDQQGVFLAAVEIDGAIHE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAV-----------RVQGKDEVILTLNKSGIGPVTAADIT 116 YS EG++E IL+ILLNL+ ++V ++ + + G V A D+ Sbjct: 66 YSRLEGLKESILDILLNLRQVSVLLTDDTSKTASEFANQETFVGYFDLQGPMEVKAKDLK 125 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRG-------------YVPASTRIHSEE 163 +E P I LT N + R + G + ++ Sbjct: 126 FPKQIECGNPNQHIATLT-RNCTFQGRFLILTNPGLTFKNQSIGDPLLFTKQVAKLEIGN 184 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAAR--VEQRTDLDKLVIEMETNGTIDPEEAIRRAA 221 L V+ + + R+ Y VE EQ+ + +V+E+ TNGTI P++AI A Sbjct: 185 RLLEKNWLYVNPITNAIRRVNYVVEQFGDVWEQK---EVVVLEVWTNGTIHPKQAIHSAC 241 Query: 222 T--ILAEQLEAFVDLRDVRQP-----------------------------EVKEEKPEFD 250 T + V+ + P + + Sbjct: 242 TKLSTLFSSLSSVNTTAFKFPASVARFKKVKTDSGADGNLTVKPMTEFSGQESPAGDKLT 301 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + + +L+L++++ LK I IG+L+Q + +L + NL + EI+ L Sbjct: 302 ILFDLDIANLQLSLKTYLVLKNAKIQNIGNLLQYNKSDLTRLLNLANSQIEEIETALNVF 361 Query: 311 GLSL 314 GL+ Sbjct: 362 GLAF 365 >UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ectocarpus siliculosus RepID=D1J731_ECTSI Length = 361 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 62/362 (17%) Query: 5 VTEFLKPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + K + VD + S + LE+ G T+GN LRR+LLS++ G +T V + Sbjct: 1 MQNMSKCKCVDSDLLSPSELYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLP 60 Query: 63 GVLH-EYSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDG 119 V H E++ +GV+ED LE++LNLK + ++ + K L G VTA I Sbjct: 61 DVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGSIKFSK 120 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 ++++ P + + ++D ++ + + +K++ G+ YV A ++ E L +D+ ++P Sbjct: 121 GIKVLNPNNYLLTISD-DSFVEIHLKLEHGKAYVLAK----DQKLEGSTYFLPIDSNFAP 175 Query: 180 VERIA-YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--- 235 V ++ Y + + TD++ L +E+ TNG++ P +A+ +A ++ L + Sbjct: 176 VLKVNSYVKTLPQHIENTDVE-LHLEIFTNGSLLPHQALLQAKNMIGYMLSTVNKMEFPC 234 Query: 236 --------------------------------------DVRQPEVKEEKPEF------DP 251 + + ++E PE + Sbjct: 235 LSQVVSEETKSIVKIENIQKKIYKKKEKTVQAKIFQSGEKKAKCIEEPTPEELLLKRVNE 294 Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE---LLKTPNLGKKSLTEIKDVLA 308 + +D L+L+ R LK I++ +L+ L+ LG KS+ EI+ L Sbjct: 295 MDSGSLDCLKLSDRIVKALKKANINFTWELMDYDSSGPPYLIDIKGLGPKSVAEIEKSLR 354 Query: 309 SR 310 Sbjct: 355 LF 356 >UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma synoviae 53 RepID=RPOA_MYCS5 Length = 333 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 142/313 (45%), Gaps = 20/313 (6%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 Q +S + ++ LERGFG+TL ALRRILLS++ G A V I+GV HE++ E V ED Sbjct: 18 QNNSYKKVLKIKGLERGFGNTLAVALRRILLSNITGIAPFCVRIEGVEHEFTALEKVSED 77 Query: 78 ILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADITHD--GDVEIVKPQHVI 130 I+ IL NLK + + + L+LN + +T+ +T VE+ I Sbjct: 78 IVTILSNLKKVVLNYDEDYVKDNQIIKLSLNANEDNRITSNHLTVTNAPRVEVQNKDVEI 137 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTR----------IHSEEDERPIGRLLVDACYSPV 180 L+ + + + ++ GRGYV + + +D+ +SPV Sbjct: 138 ATLSKPGV-LKLEMFLRAGRGYVDFEDNKKFIEEKEKELKELSSLSKGAFIAMDSVFSPV 196 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 +A+ V ++L +E+ET + PE AI+ A IL + DL D+ Sbjct: 197 VNVAWKVTELNTASLKIEEQLELELETKLGVTPESAIKLACKILVAHFQTIGDLTDLDSD 256 Query: 241 EVKEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E+ + + + + L L++RS N L I + +L +L + NLG+K Sbjct: 257 EIFQSEKQSLEKEEDDMEIRLLNLSMRSQNALAKSGIKTLNELASYPIEKLKEIKNLGEK 316 Query: 299 SLTEIKDVLASRG 311 S EI L G Sbjct: 317 SREEIIRKLNEYG 329 >UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus RepID=Q9BAC8_FUCVE Length = 226 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 ++ K +D+ + + L++ G+T+GN LRR LLS++ G + V G+ Sbjct: 3 MSSKCKCVDLDLLNTNEFYGHFVFTALKKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAGI 62 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVE 122 +E++ EGV+ED+ EI+LNLK + + L G +TA + +V+ Sbjct: 63 NNEFALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNVK 122 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ P + + ++DE+ I + +K++ G+ Y+ A ++ E + + +D+ ++PV + Sbjct: 123 ILNPNNHLLTISDESL-IEIEVKIEAGKSYILAK----DQKLEGALDFIPIDSNFAPVLK 177 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 + + + + + + ++L +E+ TNGT+ P +A+ +A T++ L Sbjct: 178 VNWYIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYMLSPI 226 >UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEY4_CHLKE Length = 275 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 124/269 (46%), Gaps = 45/269 (16%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +F I+ +A+ L RG T+ NALRR LL +P VT+V IDGV+H Sbjct: 7 KFYSCVETRIQSQGEMYARFHLGTFFRGQALTVANALRRTLLGELPYLIVTKVHIDGVVH 66 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI---------LTLNKSGIGPVTAADITH 117 E+S+ GVQE +L+ILLNLK L + K I + L G VTAAD+ Sbjct: 67 EFSSIPGVQESVLDILLNLKRLTFTISNKKFNIFSNSWLKTKVFLKIRGPAKVTAADLKL 126 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKV------------------------------- 146 + V P H I L+ NA ++ +++ Sbjct: 127 PPHLACVWPNHYIATLSS-NAELACVLELAVVHPKQKISIAKNEVGSKNKIFGKVTNDVF 185 Query: 147 QRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEME 206 ++G+G S +I ++ E+ +D YSP+ ++ Y + ++ + + + LV+E+ Sbjct: 186 EKGKG--TESKKILTDSIEKNKKIFSLDTNYSPIRKVNYVI--YELDSKKNSEYLVLEIV 241 Query: 207 TNGTIDPEEAIRRAATILAEQLEAFVDLR 235 T+G+I+P++A+R A L + F + Sbjct: 242 TDGSIEPKQALRFAFKQLTKLFYEFTQIS 270 >UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z691_SULMW Length = 239 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 138/233 (59%), Gaps = 10/233 (4%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F + + + + +++ +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV Sbjct: 4 LKFKQSKNLRVLKLTPEEGLFKIEPLFPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVN 63 Query: 66 HEYSTKEGVQEDILEILLNL-----KGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDG 119 HE+ST +GV ED+ EI+LNL K + + EV + + +TA D+ + Sbjct: 64 HEFSTIKGVIEDMTEIILNLKKVRFKKNKKKENFESEVFNMIISNDKEEITAGDLGKYIN 123 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 +I+ P +I + + S+ + I +++G GYVP+ ++E+ G + +D+ ++P Sbjct: 124 KFDILNPDLIILN-KQKLISLDISIVIKKGIGYVPSE---ENKENLIGSGSIPMDSIFTP 179 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 ++ + Y ++ + + ++ + L++E++T+G+I+P +A+ A+ IL + L+ F+ Sbjct: 180 IKNVKYKIDNCSINKNSNYESLLLEIKTDGSINPRDALTNASNILIQHLKMFI 232 >UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragment) n=5 Tax=Leuconostocaceae RepID=A6Q046_LEULA Length = 190 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 5/188 (2%) Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 +ED+ +I+LNLK + + + DE L ++ G VTAAD+ DVE++ P I + Sbjct: 5 CREDVTQIILNLKKVVLAIDSDDERSLEIDVQGPAEVTAADLQAGADVEVLNPDLHIATV 64 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 S+ M + +GRGY A E E PIG L VD+ Y+P+ER+ Y+VE RV Sbjct: 65 A-AGKSLHMTVTAVKGRGYSSADENKQLRE-EMPIGVLAVDSIYTPIERVNYHVENTRVG 122 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE---FD 250 R D DKL ++ TNG+I P +A+ A ILAE L F+D+ V + E Sbjct: 123 ARDDYDKLTFDIWTNGSIKPSDALSLGAKILAEHLNLFMDISPVAAEANVMVEAEPVAVS 182 Query: 251 PILLRPVD 258 P++ Sbjct: 183 ASDSAPIE 190 >UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Tax=Heterosigma akashiwo RepID=B2XTD4_HETA2 Length = 402 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 15/229 (6%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 D + + + K + L G G T+G+ALRR+LL+ +PG A+ + I + E+S+ GV Sbjct: 10 DQNEYNEQYGKFLINSLHPGQGTTVGSALRRVLLTDLPGLAIVGLRIANINTEFSSLPGV 69 Query: 75 QEDILEILLNLKGLAVRVQ---GKDEVILTLNKSGIGPVTAA--DITHDGDVEIVKPQHV 129 +EDILEI+LN+K + + + K V+ L G G VTAA + D +++I+ P Sbjct: 70 REDILEIILNVKDIVIEGEFNSSKPWVLGRLKLKGPGVVTAALIEFEEDANIQIINPSQY 129 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I + + N+SI M VQ G+ Y + L +DA + PV ++A+ V + Sbjct: 130 IATI-EVNSSIEMEFLVQTGKNYRLVESE---NSITYSTDFLQIDAIFMPVTKVAFEVTS 185 Query: 190 ARVE------QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + D + L +E+ TNG+I P +A+ +A+IL + Sbjct: 186 TKTNALENNSSIQDNENLTLEIWTNGSISPIKALVFSASILENLATQLL 234 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 217 IRRAATILAEQLEAFVDLRDVRQPEVKEEKPE----FDPILLRPVDDLELTVRSANCLKA 272 I I+ + + + +P ++E++ + P+++L L+VR+ N LK Sbjct: 299 IDLNFNIIPKNINKDQEDDSKSEPSIEEKRENVTSNERNLSQMPIEELILSVRAYNGLKR 358 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 IH + DLVQ + +L N GKKSL E+ L + Sbjct: 359 ANIHSVSDLVQYSIKDLKDIKNFGKKSLDEVVASLKNL 396 >UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVR6_9CHLO Length = 363 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 35/296 (11%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 ++ +A L + G T+ NALRR LL+ C++T V I+ + HEYS +G+ Sbjct: 27 TVDHTPQLYACFQLGLFPKNQGLTIANALRRTLLTESTECSITGVLIEDIKHEYSNLKGI 86 Query: 75 QEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 +E + +IL+NLK + + L++ G + A ++ + + P I Sbjct: 87 KETVFDILMNLKKIIFFSGQSFFKTQVSFLSEKGPIVLKAKNLKLPSFLFCINPDQYITT 146 Query: 133 LTDENASISMRIKVQRGR-----------------GYVPASTRIHSEEDERPIGRLLVDA 175 L + N+ I+M I + + + P + + ++++ L +D Sbjct: 147 L-ETNSKINMTIFIDQSTPKNFSYFTHCYYSNFSNNFFPFKLKKNFTQNQQS-NFLFLDT 204 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 + P+ + Y ++ + + + L E+ TNG++ P +++A L L F LR Sbjct: 205 QFCPISNLNYKIKK----KESQKEILFFEIWTNGSVHPNFILKKAIKNLLLNLIPFHSLR 260 Query: 236 DVRQPEVKEEKPEFDPILLR----------PVDDLELTVRSANCLKAEAIHYIGDL 281 + + E + I+ + + + +++ + LK I IGDL Sbjct: 261 NSKIEFEDYENKKIQKIVSQKKFIQKLIKLDLTNFPISLETYQSLKKLNILTIGDL 316 >UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z0_OEDCA Length = 442 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 71/302 (23%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L R + + + + + + + P G G T+ NALRR LLS + AVT ++I V+H+Y Sbjct: 95 LSCRQIVKKNLRNIYGQFYIGPFFIGQGLTIANALRRTLLSELSSLAVTSIQIQDVVHQY 154 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEV--ILTLNKSGIGPVTAADITHDGDVEIVKP 126 T +G+QE + ++LLN+K + ++ + V I L G + A D+ ++ V P Sbjct: 155 QTIQGLQESVFDLLLNMKDIVLKSKTTIPVPQIGYLQVQGPCIIKAKDLLLPPFIQCVDP 214 Query: 127 QHVICHLTDENASISMRIKVQRGR--------GYVPA-------------STRIHSEEDE 165 + I L+ E+ ++M+ +++G+ GY T +HS ++ Sbjct: 215 EQYIATLS-EDGILNMKFVIRQGKHSLTHVTPGYDSFTQKYDQHSYNSTCDTNVHSNKNR 273 Query: 166 RPIG-------RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIE-------------- 204 + L++DA ++PV ++ Y +E D D+L E Sbjct: 274 NSLSLLNTYSKHLIIDASFNPVIKVNYIIEVL------DFDQLFFEKDSVKLESNDSNNF 327 Query: 205 -----------------METNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKP 247 + TNG+I P A++ + + + + F+ ++ + ++ Sbjct: 328 YCNEEKTLIKKEIIILEIWTNGSISPITALKVS---IQKLISVFLKIQKSKILNIQLIDS 384 Query: 248 EF 249 E Sbjct: 385 EI 386 >UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Carsonella ruddii PV RepID=RPOA_CARRP Length = 322 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 152/318 (47%), Gaps = 19/318 (5%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 + + I+ +S + + +E F +LGN ++R++ + + ++I + E+ Sbjct: 11 KKISIKNISFFRSIIRIETFNNSFCDSLGNFIKRVIFLTTNSYKIIYLKIYKIKSEFYDL 70 Query: 72 EGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 G+ E+ IL NL + +++ + L + K G +TA DI D ++ I P +I Sbjct: 71 PGIIENTQTILKNLDNIIIKINNDNVANLIIKKKGPCIITAKDIFSDKNITIFNPNKIIA 130 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEED----ERPIGRLLVDACYSPVERIAYNV 187 ++++ I V + + +++E + ++ SP+ + Y + Sbjct: 131 NVSNN-------IVFYCIMKCVNSLFKNYTDEFFQFKIFKENIIFLNNFKSPIISLNYYI 183 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA---FVDLRDVRQPEVKE 244 ++ L ++ETNG+I P + + + + + F+ + ++ V++ Sbjct: 184 NKKIFNKKLKK--LFFDIETNGSIKPVDCFKNCIFYIKKYFDLIFSFIGFKKYKKINVEK 241 Query: 245 EKP---EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + + + + L +++L+L++RS NCLK I IGDL++ ++ L+ PNLGKKS Sbjct: 242 KNNLNLKINSVYLNSINNLKLSIRSLNCLKNNNIFLIGDLIKISKNNLINIPNLGKKSYN 301 Query: 302 EIKDVLASRGLSLGMRLE 319 EI + L + GL+L ++E Sbjct: 302 EILNSLKNFGLNLNSKIE 319 >UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragment) n=1 Tax=uncultured bacterium RepID=A8DR58_9BACT Length = 219 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 129/195 (66%), Gaps = 4/195 (2%) Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI-LTLNKSGIGPVTAADITH 117 ++IDGVLH+YS +G+QED++E+LLNLK LA + + + + KS GPV A+D Sbjct: 19 IKIDGVLHDYSALDGLQEDVVEVLLNLKELAFNIASDENTVAINFEKSSPGPVLASDFAD 78 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 ++E+ P VIC++T + M + QRGRGY A R + +E+ IG L +DA Y Sbjct: 79 QSNIEVFNPNLVICNVTS--GVLKMELTAQRGRGYELAVNRD-VDRNEKSIGVLQLDASY 135 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 SPV++++YNVE AR R DLDKLVI++ETNG I PE+AIR ++TIL +QL AFV+L Sbjct: 136 SPVKKVSYNVEVARFGGRADLDKLVIDLETNGAISPEDAIRISSTILQQQLLAFVNLDSK 195 Query: 238 RQPEVKEEKPEFDPI 252 E +++ EFDPI Sbjct: 196 LLKEPTKKEEEFDPI 210 >UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa filiformis RepID=B9VL93_9CHLO Length = 301 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 19/230 (8%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 IE+ + + P + G T N+LRR LL ++I GV HEYS+ GV Sbjct: 9 KIEKTGQFYGCFKIGPFQTHSGMTFANSLRRTLLEDNSRYIFDTIQISGVEHEYSSLIGV 68 Query: 75 QEDILEILLNLKGLAVRVQGK--------DEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 +E +++I+ NL+ L V K I LN +G G + A I D V P Sbjct: 69 RESVIDIIFNLQKLIFEVSDKVHLVGKDPKPQIAFLNFTGPGILRAQHIHLPKDFHFVYP 128 Query: 127 QHVICHLTDENASISMRIKVQ---RGRGYVPASTRIHSEEDERPI----GRLLVDACYSP 179 I L + + ++ ++ + Y ++ S P L +D+ + Sbjct: 129 DQYIATL-EVDGKLNFKLFFSPKIFQKKYKSLHSKSGSGRQMPPSVLLENYLFLDSDFCS 187 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAAT-ILAEQL 228 +ER+ Y +++ Q + ++ E+ TNG+I P++AI + IL + Sbjct: 188 IERVNYTIQSG--NQNPKEEFILFEIWTNGSIHPQKAIYQGINEILLDFF 235 >UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorella vulgaris RepID=RPOA_CHLVU Length = 278 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 45/270 (16%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ ++ S +A+ + RG T GN++RR LLS MPG +T+V I G HE Sbjct: 8 FVSCIESRVQDQGSLYARFHIGTFFRGQALTFGNSIRRALLSEMPGFLMTDVRIQGATHE 67 Query: 68 YSTKEGVQEDILEILLNLKGLAV--RVQGKD-----EVILTLNKSGIGPVTAADITHDGD 120 ++ V+E +LEILLNLK R+ + L +G G V AADI Sbjct: 68 FAVLPDVEETVLEILLNLKKTVFVPRIPKNQKFETFQGFGFLKNNGPGKVRAADIRLPET 127 Query: 121 VEIVKPQHVICHLTDENASISMRI--------KVQRGRGYVPASTRIHSEEDERPI---- 168 V+ V P+ I LT A +S+R ++++ G + T ++ ++ + Sbjct: 128 VQCVSPEVHIATLTS-GAELSLRFNLQFRNFSQLEKREGTFKSKTVAQAKTEDGNVQDTT 186 Query: 169 -----------------------GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 +L +D PV+++ Y +++ + ++ +++E+ Sbjct: 187 NELPTLEKNSLFFQQLQNKRNSKDQLFLDTVPMPVQKVNYVIKSLNAKNGSEY--IILEI 244 Query: 206 ETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 T+G++ P+E++ A L + F ++ Sbjct: 245 WTDGSLYPQESVEFALRNLTDLFFQFANIS 274 >UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria litorea RepID=B7T1W3_VAULI Length = 230 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +E K ++PL G G ++GN RRILL+ MP +T V G+ +E+ST +GV+ Sbjct: 11 LEVPDENFGKYIIKPLNLGMGVSIGNLFRRILLTQMPRTNITGVRFAGITNEFSTIKGVR 70 Query: 76 EDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADIT--HDGDVEIVKPQHVICHL 133 ED+LEILLNLK + + +++ + + +G +T++ + ++ +V P I + Sbjct: 71 EDVLEILLNLKQIIFKGFKEEKTYVRIKITGPTVITSSCLQSALPDEITLVNPSQYIATI 130 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 T+ ++++ +K++ + A+ + E + L VD SP+ +I ++V + Sbjct: 131 TN-DSTLEFELKIESEKKSNLANNQAIFESSD----FLEVDKITSPIRQILFDV--YKKS 183 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 + ++LV+++ T+G+I P +A+ + L + L + L++++ E Sbjct: 184 ETETQEELVLQIWTDGSITPIDALITSVK-LVQNLFTQITLKNLKILE 230 >UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Stigeoclonium helveticum RepID=RPOA_STIHE Length = 517 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 3/148 (2%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 + R +E S + + + PLE G G TL NALRR LLS + G A+T VEI+GV HE Sbjct: 20 LVSCRESIMENKKSFYGRFYIGPLEVGQGITLANALRRALLSELNGLAITTVEIEGVSHE 79 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L+ILLNLK + ++ + K + G G + A DI ++ V Sbjct: 80 YSTLMGVRESVLDILLNLKQIVLKSKKSVKRAQTAYIYCQGPGVIRAGDIILPSSIQCVD 139 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYV 153 P+ I L+ + + M++ +++G+ Y+ Sbjct: 140 PEQYIATLSSDGI-LKMKVIIRQGKNYL 166 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEK 246 ++ D +++E+ TNG+I P A++ A L+ F + + ++ + K Sbjct: 449 NQSPKDIIILEIWTNGSILPRTALKHATQNLSNLFIKFQNAKMMKNSFFETNK 501 >UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Tax=Oltmannsiellopsis viridis RepID=RPOA_OLTVI Length = 508 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 L IE S +++ L P + G G T+GNA RR LLS + G +T +EIDGV HE Sbjct: 5 LLSCVESRIEHNRSFYSRFQLGPFDLGQGLTVGNAFRRTLLSELSGVGITLIEIDGVCHE 64 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L+ILLNLK L + + LN +G G VTA D+ V V Sbjct: 65 YSTLPGVRESVLDILLNLKQLVLTSDTTFTVPQVGYLNFTGPGVVTAKDLKLPVSVYCVD 124 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI 168 P I L+ +A+++ + V +G+ Y+ + E ++ I Sbjct: 125 PDQPIATLS-ADATLNFKFLVCQGKNYIIQTPVDKFHEYQKKI 166 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 49/188 (26%) Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 L VD + P++++ Y ++ E D + +V+E+ TNG+I P +A+ AA L Sbjct: 318 LPVDTLFMPIKKVNYMIDIDPAE--PDRESVVLEIWTNGSIHPRQAVHEAAKQLIHLFSP 375 Query: 231 FV------------------------DLRDVRQPEVKE------------------EKPE 248 F+ L + +VK+ +K Sbjct: 376 FLQTHLVPTTLQSTPYSKAASKTQEFSLNETSTEKVKDELGKVAFGSENNTAALNQQKNL 435 Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV-----QRTEVELLKTPNLGKKSLTEI 303 I + +L ++R+ LK E I+ + +LV Q+TE + N+ L EI Sbjct: 436 VTAIQTLDIANLNFSLRTFTFLKKENINTVSELVEFWTRQKTEAKDSIQSNVQSSVLLEI 495 Query: 304 KDVLASRG 311 + L + G Sbjct: 496 SNNLKNFG 503 >UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=Streptococcus criceti RepID=A7DUN8_STRCG Length = 168 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%) Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LN+KGLAV+ +DE + L+ G VTA D+ D D+EI+ P H + + E S+ Sbjct: 1 LNVKGLAVKSYVEDEKTIELDVQGPAEVTAGDVLTDSDIEIINPDHYLFTIA-EGHSLKA 59 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + V + RGYVPA ++ D P+G L VD+ Y+PV+++ Y VE ARV DKL Sbjct: 60 TMTVAKNRGYVPAEG---NKSDSAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLT 116 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 IE+ TNGTI PE+A+ +A +L E L F DL ++ + ++ E Sbjct: 117 IEIMTNGTIIPEDALGLSARVLIEHLNLFTDLTEIAKTTEVMKETE 162 >UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Francisella tularensis subsp. holarctica FSC200 RepID=UPI000169A5A9 Length = 224 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-D 62 ++ L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I D Sbjct: 2 ALENLLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKIND 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDV 121 G + E + +I+LN+K L+V + + + +T SG ++ + Sbjct: 62 GKVTSLEDVIPCDETVADIILNVKSLSVTLAEDVETGTITFELSGSEEEIFSEEAKLSEG 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 + + IC + + + KV++G G+ PA +D G L+DA +SPV Sbjct: 122 LAITEEVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVV 173 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL V Sbjct: 174 FCDFEIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNIV 224 >UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella terrestris RepID=B2X253_9CHLO Length = 316 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGV 74 + E + + + + P E G T+ NALRR LLS +PG +T VEI+GV HEYST GV Sbjct: 30 EKENNQTFYGRFYIGPFEIGQSLTMANALRRSLLSEVPGLGLTSVEIEGVAHEYSTIPGV 89 Query: 75 QEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 QE + +ILLN+K + + K I SG + A D+ ++ V P I Sbjct: 90 QETVFDILLNIKNIVFKSTTYLKKAEIGYCRASGPKTLRAKDLLLPAHIQCVNPDQYIAT 149 Query: 133 LTDENASISMRIKVQRGRGYVPASTRIHSE 162 L + +++M++K+++G Y+ + SE Sbjct: 150 LKS-DGTLNMKLKIRQGTHYLVNTPFEQSE 178 Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 11/136 (8%) Query: 103 NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSE 162 K G + + +++ +EN + + +Q+ + V + + Sbjct: 192 KKKGQSMLKQNKSDLEEKLQVFSKTLK--TKKNENKAFKNVLNIQKEKSLVVPTRKSKP- 248 Query: 163 EDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAAT 222 LL+D + PV + Y +E + + +V+E+ TNG+I P A++ A Sbjct: 249 --------LLLDPVFMPVTKANYVLELDERVHNSPKELIVLEIWTNGSISPHGALQTAIK 300 Query: 223 ILAEQLEAFVDLRDVR 238 L L + + ++ Sbjct: 301 KLVRLLGNVKNAKMLK 316 >UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B7_CHLMO Length = 633 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 5 VTEFL-KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +++F+ + IE S + L P E T+ N LRR LLS + G A+ VEI+G Sbjct: 1 MSQFIISCKESRIENNRSFYGCFELGPFEPSQSLTIANTLRRTLLSEIYGLAIVSVEIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADITHDGDV 121 HEYS+ GV E +L+ILLNLK + ++ ++ I L G G VT + + + Sbjct: 61 ASHEYSSLPGVHESVLDILLNLKEIVLKKSIKNFTPQIGYLRARGPGVVTGSHLRLPPFI 120 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRG 149 + V P I L+ N ++++ VQ G Sbjct: 121 QCVDPDQYIATLS-HNGFLNIKFVVQYG 147 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 17/130 (13%) Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDL 260 + +E+ TNG++ P +A+ +A L + +++ ++ L Sbjct: 474 ITLEIWTNGSLHPRDALNQAFKNLIKTFLQLKNVQPY------GLNNLLFNSQSLSINAL 527 Query: 261 ELTVRSANCLKAEAIHYIGDLVQ--RTEVELLKTPN--LGKKS-LTEIKDVLASRGLSLG 315 T L+ I +L + L + N G++S L +I G+ Sbjct: 528 GET------LQVSNISEENELALDPTNKKNLKRGKNDFSGQQSKLEQILLKKIRMGVFKK 581 Query: 316 MRLENWPPAS 325 +E P + Sbjct: 582 DFIETLSPLN 591 >UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative n=9 Tax=Plasmodium RepID=B3LBN8_PLAKH Length = 674 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 99/268 (36%), Gaps = 25/268 (9%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + + E NA RR+ + + G VT + I + HE+ GV+E+ Sbjct: 299 HQGRAYTYFFMHSHEVELSPIFLNAFRRVAMKHLKGGRVTALRIPNMKHEFYCIVGVREN 358 Query: 78 ILEILLNLKGLAVR-----VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH 132 ++ NL+ + + + + + G V A + +EIV IC Sbjct: 359 FFDLAQNLRQITFKNVPENIDMDNYITGKFRIKGPMIVVAGHMQLPKGIEIVNKNQYICS 418 Query: 133 LTDENASISMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR 191 ++ + + M +K++ YV P D + + +PVE + + Sbjct: 419 VS-AGSYLEMDVKIESIEEYVMPEYGSQSRNRDICKDNFIHFSSSCTPVEYFGFMGQRRG 477 Query: 192 VEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD--------------LRDV 237 + T + ++EM T+G+I P+ A+ + ++E + + + Sbjct: 478 INLDTLGEINIVEMHTDGSITPKSALLKTIDYISENFQYMENALYNNCHTCDDGSVEEEF 537 Query: 238 RQPEVKEEKPEFDPI----LLRPVDDLE 261 R PE +K + + ++LE Sbjct: 538 RNPEFYMDKDRYTDVPWNKYKTTAEELE 565 >UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosira terrestris RepID=A6YGD4_LEPTE Length = 537 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 E S + + + P G G T+ N LRR LLS + G A+T VEI HEY T G+ E Sbjct: 20 ETNRSFYGRFEIGPFAHGQGITVANMLRRTLLSELSGLAITAVEIKEASHEYMTLPGISE 79 Query: 77 DILEILLNLKGLAVRVQ--GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 + +I+LNLK L R K L+ G + A+ ++ V P I L Sbjct: 80 SVQDIILNLKQLIFRSNFDLKQPEFGFLSIQGPAIIKASHFRLPSFIKCVDPNQYIATLA 139 Query: 135 DENASISMRIKVQRGRGY 152 N +++++++ +G+ Y Sbjct: 140 F-NGQLNLKVQICQGKNY 156 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 162 EEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDL-DKLVIEMETNGTIDPEEAIRRA 220 + + L VDA ++PV ++ Y + E+ +++++E+ TNG+I P+ AI +A Sbjct: 463 NKLIKTDNILPVDAIFTPVTKVNYLI--CLDEKVKPFKEQILLEIWTNGSITPKTAIYKA 520 Query: 221 ATILAEQLEAF 231 A + + L Sbjct: 521 ADCILDLLLPL 531 >UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitochondrial n=1 Tax=Reclinomonas americana RepID=RPOA_RECAM Length = 222 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 114/222 (51%), Gaps = 16/222 (7%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV--LHEYST 70 ++ + + +V + PLE+ F + N LR+I+ G ++ ++I+G+ LH YS Sbjct: 11 IIHVLKHDFNSIQVLIGPLEKNFSGSFANLLRKIIFRYTSGVSIIGLKINGIDSLHSYSL 70 Query: 71 KEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 GV+ED+L +L NLK L +++ D ++LT+ K G + + DI +++I+ Sbjct: 71 IPGVKEDVLNVLNNLKHLLIQIDDYDYKPILLTIQKKGPYIIKSKDIICPSNIKILNDDL 130 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 IC L + ++ I + + G GYV ++ + + + D + P++ ++Y V Sbjct: 131 YICTLEN-DSQIDLTLIGDIGCGYVLSTYFGNRKS------IVYSDTNFCPIKHVSYYVR 183 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + T ++L+ ++TNGT +P ++ A + L +++ Sbjct: 184 SY-----TTYEELIFYIKTNGTCNPLFVMKNAFSFLKDKINI 220 >UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlamydomonas reinhardtii RepID=RPOA_CHLRE Length = 550 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 12/161 (7%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ + IE ++ + L P + TL N LRR LLS + G A+T +EI+GVLH+ Sbjct: 20 FIACKESRIENNTNFYGCFYLGPFDESLSQTLANDLRRTLLSELTGLAITSIEIEGVLHK 79 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQ-----------GKDEVILTLNKSGIGPVTAADIT 116 +ST G++E +L+++ NL+ + +R + K I L+ +G + AAD+ Sbjct: 80 FSTLTGMKEPVLDLICNLQNIVLRKETISSTNMNYRATKKTYIGFLSVNGPRVIKAADLK 139 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPAST 157 ++ V P I L E+ ++M+ + G+ Y+ Sbjct: 140 LPAGLQCVDPNQYIATLA-EDGFLNMKFNINEGKNYIKQKP 179 >UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pseudendoclonium akinetum RepID=RPOA_PSEAK Length = 577 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 L +E ++ + + L P G T+ NALRR LLS +PG ++T VE+ G +E Sbjct: 41 LLSCIDSRVENLTKFYGRFELGPFAPGQALTVANALRRSLLSQLPGTSITLVEVRGASNE 100 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVK 125 Y GV+E IL+ILLNLK + + + I L+ G G + A D+ + V Sbjct: 101 YEIITGVRESILDILLNLKQIVLTSDFEIFSPQIGFLSVEGPGVIRANDLKLPSFIYAVD 160 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIH 160 P I L++ ++M+ + G+ Y+ + Sbjct: 161 PNQYIATLSNSG-RLNMKFLICCGKNYITYNPNDS 194 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 36/198 (18%) Query: 153 VPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTID 212 V + + + IG +DA + P+ R+ Y +E+ + D++++E+ TNG+I Sbjct: 379 VDYDSDFNLDHKSTKIGYFPIDAIFMPINRVNYLIESTEDIKLKIKDRVILEVWTNGSIH 438 Query: 213 PEEAIRRAATILAEQLEAFVD------------------------LRDVRQPEVKEEKPE 248 P AI +AA L + + + ++ + + P+ Sbjct: 439 PRHAIHKAAKALIQLFLPLQQIRTNLFLISDNSHFEEGQDKIKKRIDNFKKEALLKANPQ 498 Query: 249 FDP------------ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 +L + +LELT R +CLK I+ I DL+ ++ +LL N G Sbjct: 499 IQANPQLKKRNFDHRLLELDIANLELTARPYSCLKLANINTIEDLISYSQEDLLSIKNFG 558 Query: 297 KKSLTEIKDVLASRGLSL 314 ++SL E++ L L+L Sbjct: 559 RRSLIEVQKALQLMKLTL 576 >UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Tax=cellular organisms RepID=RPOA_NEPOL Length = 495 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + + + + PL G G TLGNALRRILL + G A T + G HE+ T G++E Sbjct: 13 SARTYYGRFCVLPLPAGQGITLGNALRRILLGDLVGFAATSANLAGASHEFDTLPGIRES 72 Query: 78 ILEILLNLKGLAVRVQGKDEV-------ILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 +LEILLN+K L + +LN +G VTA D+ +++V P I Sbjct: 73 VLEILLNIKQLVFKQISSRPKDTNRFAMRASLNLTGPATVTAKDLVLPSWMKVVDPSQYI 132 Query: 131 CHLTDENASISMRIKVQRGRGYV 153 L AS+ I++ +G GY Sbjct: 133 ATLAS-GASLEFEIQLSQGSGYR 154 Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 L +DA + PV R+ Y VE + R ++LVI++ TNG++ P +A+ +AA IL L Sbjct: 237 TLHIDAVFFPVTRVNYRVEEEVINGRR-REELVIDIWTNGSLSPRKALDQAAVILIRMLA 295 Query: 230 AFVDLRD--VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 + + + K I L P++ L+L+VRS NCLK I +G L+ T Sbjct: 296 SLQAPPPLLIEPEKKPTTKTIAKEIALTPIESLDLSVRSFNCLKRANITNVGKLIAYTRQ 355 Query: 288 ELLKTPNLGKKSLTEIKDVLASR 310 ELL+ N G KS +E+ DVL SR Sbjct: 356 ELLQLKNFGTKSASEVVDVLNSR 378 >UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox carteri RepID=B8R199_VOLCA Length = 768 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 20/212 (9%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ + IE +S + L P + T+ N +RR LLS + A+T +EI+G+LH+ Sbjct: 20 FIACKESRIENNTSFYGCFYLGPFDDSLSQTIANDIRRTLLSELTSLAITSIEIEGILHK 79 Query: 68 YSTKEGVQEDILEILLNLKGLAVRV-----------QGKDEVILTLNKSGIGPVTAADIT 116 YS+ G++E +L+++ NL+ + ++ K LN SG + A D+ Sbjct: 80 YSSLPGMKETVLDLICNLQSIVLKKQEISFTNITLRSTKKTYRGFLNVSGPRVIKAMDLK 139 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 ++ V P I L E+ ++M++ + G+ ++ + LL Sbjct: 140 LPSGLQCVDPNQYIATLA-EDGLLNMKLNINEGKNFIKQKPHNLDVSVLKKRNLLL--QN 196 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETN 208 + ++ A++ + + D+ ++TN Sbjct: 197 FK--KKAAFSSRKLLLGKHNCKDR----IKTN 222 Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 38/59 (64%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 P+ L++++R+ LK I I DLV+ ++ +LLK NLGKKSL I+ L+ GL+L Sbjct: 706 PIGILKISLRAYTALKKAGILTINDLVKCSKNDLLKINNLGKKSLVLIETSLSYLGLTL 764 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 163 EDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK---LVIEMETNGTIDPEEAIRR 219 + +V+ +P+++ +E A+ + L K L++E+ TNG+I P +A+ + Sbjct: 540 SNIFKNTFKIVNTSINPIKQQTMYLEYAKNIKLKPLRKKSQLIVEIWTNGSIHPRQALYQ 599 Query: 220 AATILAEQLEAFVDLR 235 T L+ ++ Sbjct: 600 CFTFLSNNFLKLQTVK 615 >UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY14_DUNSA Length = 547 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 26/166 (15%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 + IE S + L + G T+ NALRR LLS G A+ V+ID V HEYST Sbjct: 2 KESRIENNKSFYGCFYLGSFDSGQSITVANALRRSLLSDCTGLAIISVKIDAVQHEYSTL 61 Query: 72 EGVQEDILEILLNLKGLAVR-----------VQGKD--------------EVILTLNKSG 106 GV++ +L+ILLN K + ++ + K V+ L G Sbjct: 62 PGVRDSVLDILLNFKEIVLKKVKNPFGGPNGYKNKGLSSVYDKVGSTFFKPVVGYLKVKG 121 Query: 107 IGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGY 152 G + A D+ ++ V P I L E+ ++++ + G+ Y Sbjct: 122 PGIIRAKDLRLPPFIQCVDPNQYIATLA-EDGVLNVKFVIMEGKSY 166 Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 17/30 (56%) Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEA 230 +++E+ TNG++ P +A+ A L+ Sbjct: 495 VLLEIWTNGSLHPRDALLMAFKSLSYTFSP 524 >UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Tax=Scenedesmus obliquus RepID=RPOA_SCEOB Length = 478 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 3/141 (2%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 FL + +E S + +L P + T+ NALRR LL+ + A+T +EI+GV HE Sbjct: 9 FLSCKECILENPRSFYGSFSLGPFKNSQSLTVANALRRTLLAELSNIAITHLEIEGVTHE 68 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L++LLN KG+A++ + L G G V A+D+ ++ V Sbjct: 69 YSTLVGVRESVLDLLLNFKGIALKNTSPVTKPLFGYLQVRGPGVVRASDLKFPPMIQCVD 128 Query: 126 PQHVICHLTDENASISMRIKV 146 P I L +EN + ++ ++ Sbjct: 129 PDQYIATL-NENGKLILKFRI 148 Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 56/232 (24%) Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR-VEQRTDLDKLV 202 ++++ + + + + + L VD ++P+ ++ Y +E +++ + + Sbjct: 244 FRIEKNQQDFNKNKNGNFDSQKNKTNSLWVDPLFNPILKVNYIIETIEPMQKNIPNEIVF 303 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLE--------------------------------- 229 IE+ TNG+I P +A A L + Sbjct: 304 IELWTNGSIHPRKAFYTALLYLKTMFDKLDCMRLLNYEFSNTMLESEKTSTKFFKTFEYD 363 Query: 230 -------------AFVDLRDVRQPEVKEEKPEF---------DPILLRPVDDLELTVRSA 267 +F + E+++ + ++ + P+ +L L R Sbjct: 364 FRFYNSREDKTMKSFTPEKFFLPEEIEDVEKDYLLNLKNQADNTWNDLPLTNLNLPYRIT 423 Query: 268 NCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLE 319 L +GDL++ + EL K +G + ++ GL LG R E Sbjct: 424 KILAKNNFFVVGDLLKISPNELKKLSGIGNYCVFILQKRFEKLGLKLGSRNE 475 >UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,truncated, putative n=6 Tax=Plasmodium RepID=B3L930_PLAKH Length = 805 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 106/274 (38%), Gaps = 34/274 (12%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G L+ + + + G A+ +++ ++E + + Sbjct: 404 IIKYPQNGRLYQKFYIGPLNITDGHTFGTLLKYVCQTQVYGYAIVAIKVHN-MNEDTRID 462 Query: 73 GVQEDILEILLNLKGLAVRVQG-KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 VQED+LEI LNL + + + E + L G V A I +++V + IC Sbjct: 463 NVQEDLLEIALNLSDVCIYSKEINIETNVRLIFKGPLMVVAGMIPLPSHLQVVNKEQYIC 522 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSE---------------EDERPIGRLLVDAC 176 L E+ + + IK++ G+G+ + + ++ + + A Sbjct: 523 TLK-EDGYLDISIKIEYGKGHWLTYEKGLYKREVGSDNECMKKRQVKEVVEKNYMPISAS 581 Query: 177 YSPVERIAYNVEAA--------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + + V R E LV+E+ ++ + P+ + + + L Sbjct: 582 FGSCRMVRMAVHKIATKYWCEDRCEFTDPKQMLVMEIWSDCRMLPKNVLLYGIKNIKKIL 641 Query: 229 EAFVDL--------RDVRQPEVKEEKPEFDPILL 254 F ++ DV E+K+ P D Sbjct: 642 RKFREMIISDTDFPSDVEDEEIKKLWPAIDRYKF 675 >UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AQ59_BABBO Length = 610 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 24/214 (11%) Query: 39 LGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRV-----Q 93 L N+LRR+ + +T + I G+ +E+ + G++ED ++ NL + R Sbjct: 237 LLNSLRRVAKRHLGAGRITALRIPGMKNEFYSIVGLREDFFDLSRNLTKVIFRNVPMTAT 296 Query: 94 GKDEVILTLNKSGIGPVTAADITHDG-----------------DVEIVKPQHVICHLTDE 136 +I L G A I D +EIV IC L+ Sbjct: 297 FHRPLIGRLRLKGPIIAVAGHIELDQTFQKEGVGSSSGSKDDRRIEIVNKNQYICALS-R 355 Query: 137 NASISMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQR 195 +A + M +K++ YV P D P G + + +P+E A++ + +++ Sbjct: 356 DAYLDMEVKIEYIANYVMPEKGPESLNRDITPDGFIHFSSSCTPIEVFAFDGDRRGIDEE 415 Query: 196 TDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + + + +E+ T+G+ P A+ AT + E Sbjct: 416 STSEIVTLELHTDGSTTPRLALLNCATFIETWFE 449 >UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putative n=2 Tax=Piroplasmida RepID=Q4UG79_THEAN Length = 680 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 105/262 (40%), Gaps = 29/262 (11%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 L+ I + K + P G T+G+ L+ + S PG AV V+I +++ +T + Sbjct: 252 LIRIPDTGRLYQKFYMGPYPVTMGWTIGSLLKVMTQSRCPGHAVVAVKIHN-MNKDTTVD 310 Query: 73 GVQEDILEILLNLKGLAV-RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 GV +D+L I LN K +A+ ++ E + G V A + V+I P+ I Sbjct: 311 GVADDLLNIALNFKMVALQTLEPGKEARVRTKIKGPAMVCAGALEWPPFVKICNPESYIT 370 Query: 132 HLTDENASISMRIKVQRGRGYVPAS---------------TRIHSEEDERPIGRLLVDAC 176 L +E A + + IK++ GRG+ A + ++ + G Sbjct: 371 KL-EEGAELDLEIKIEWGRGFWMADSKGLYRVEEGANSLCQKRRDIKEVKEEGFYPTSCV 429 Query: 177 YSPVERIAYNVEAARVEQ--------RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + I V ++ +D+LV+E+ T+ + P+ + L E + Sbjct: 430 FGGCRMIRLAVHKLMGQRWCSLTYTCPDPMDQLVVEIWTDVSTTPKHVLEFG---LCEVI 486 Query: 229 EAFVDLRDVRQPEVKEEKPEFD 250 +L+ +V E + Sbjct: 487 AWLTELKRQVSHDVDFENEDEQ 508 >UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative n=2 Tax=Theileria RepID=Q4UCN2_THEAN Length = 587 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 99/261 (37%), Gaps = 50/261 (19%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + L L N+LRR+ + +T + I G+ +E+ + G++ED Sbjct: 160 HNGKAFTFFYIHSLHTDVIPVLLNSLRRVAKRHLGSGRITALRIPGMENEFYSVVGLRED 219 Query: 78 ILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADITHD-------------- 118 E++ NL+G+ + K VI TL G A + D Sbjct: 220 FFELVRNLRGVIFKNVPKTATFHRPVIATLRLKGPIIAVAGHLKFDNKRSTKTASDIDNK 279 Query: 119 -----------------------------GDVEIVKPQHVICHLTDENASISMRIKVQRG 149 G++E++ H IC L+ + ++M +K++ Sbjct: 280 TENKNDNTDTKADNEEGVINDYVYDKKYTGEIEVINKNHYICSLS-QGCYLTMDVKIEYI 338 Query: 150 RGYV-PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETN 208 YV P D P G + + +PVE + E +++++ + + +E+ T+ Sbjct: 339 SNYVIPEFGPESLNRDITPDGFIHFCSSCNPVEIFGFTGERRGLDEQSTSEIVSLELHTD 398 Query: 209 GTIDPEEAIRRAATILAEQLE 229 G+ P A+ R+AT L + Sbjct: 399 GSATPRVALLRSATFLLNWFD 419 >UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, putative n=3 Tax=Plasmodium RepID=Q8IKB1_PLAF7 Length = 861 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 26/270 (9%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G+ ++ + + + G A+ +++ ++E + Sbjct: 469 IIKYPQNGKLYQKFYIGPLNITDGHTFGSLIKYVCQTQIYGYAIVGIKVHN-MNEDTKIN 527 Query: 73 GVQEDILEILLNLKGLAVRVQGKD-EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 VQED+LEI LN+ + + + + E + L G + A I ++I+ +H IC Sbjct: 528 NVQEDLLEIALNISDVCIYSKEINLESNIRLIFKGPLMLVAGMIPLPSHLKIINKEHYIC 587 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI---------------GRLLVDAC 176 + E+ I + IK++ G+G+ + + + + + + Sbjct: 588 TIK-EDGFIDISIKIEYGKGHWLTYDKGLYKRERGSDNDCMKKREIKEVVHKNYMPISSS 646 Query: 177 YSPVERIAYNVEAA--------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + I V R E LV+E+ T+ + P+ + + + L Sbjct: 647 FGACRMIRLTVHKIATKFWCEDRCEFTDPKQMLVVEIWTDCRMLPKNVLLYGIKNIKKIL 706 Query: 229 EAFVDLRDVRQPEVKEEKPEFDPILLRPVD 258 F ++ +E+ + L +D Sbjct: 707 RKFREMIVKDTDFTFQEEEQEIKNLWPAID 736 >UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN28_HODCD Length = 228 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 6/196 (3%) Query: 36 GHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ-G 94 HTL ALRR L++ + G AV + +DG H + EGV ED+L + N + + G Sbjct: 25 AHTLAVALRRTLMARVEGWAVVGLCVDGAAHALARAEGVIEDVLGVAANAARIVFEGECG 84 Query: 95 KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVP 154 V+ + ++ G VTA + + +V +C + V RG GY+ Sbjct: 85 SRRVVKAVVRASAGVVTAGQLVLPEGLRVVNTNERVCSV-GAGCVFRAEFVVARGVGYMR 143 Query: 155 ASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPE 214 A+ + + G +VDA +SPV+R++Y V +A ++ D +LVIE TNG +D Sbjct: 144 AA-QARARWSRVLAGYTVVDAHFSPVKRVSYKVSSAEDDRSCDRAQLVIE--TNG-VDGA 199 Query: 215 EAIRRAATILAEQLEA 230 A+ A L+ + Sbjct: 200 HAVVDACRELSRCFQL 215 >UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bigelowiella natans RepID=RPOA_BIGNA Length = 358 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 64/354 (18%), Positives = 125/354 (35%), Gaps = 52/354 (14%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 + + + +++ + P + N LRR+LLS +T V I G H Sbjct: 4 KLFSCIESRLRGKRNYYSRFYIGPFLKNQAFLYSNVLRRVLLSDSSNIVITAVNIVGAKH 63 Query: 67 EYSTKEGVQEDILEILLN------LKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 EYS GV+E L++LLN +K + + L +G + +DI Sbjct: 64 EYSLLPGVRESSLDLLLNLKELVFVKDIYTKFN--KSYFAYLKSNGPKIIRCSDIILPNT 121 Query: 121 VEIVKPQHVICHLTDENA-SISMRIK------VQRGRGYVPASTRIHSEED--ERPIGRL 171 + V I +++ + + M++ Y S + D E+ L Sbjct: 122 IYAVDSTQYIATISNNKSLILKMKLTANLLNNFYSNLNYELNSLLSYYTNDILEKTNFSL 181 Query: 172 LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 ++D +S V ++ ++ + D + +E+ TN + P I+ + + + Sbjct: 182 IIDPNFSCVNKVNSSLISL-DNLENYNDSISLEVWTNSSYSPRIIIQNSIKSMVNLFLSI 240 Query: 232 VDLRDV----------------------------------RQPEVKEEKPEFDPILLRPV 257 D + VK + + L + Sbjct: 241 YDTSFIDIKLENSDNFLENHLVSLSNRATFFKKSFFNICTEFNTVKYKTSFDKNLTLISI 300 Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 D+L+L++ S LK I + DL + + L + N+ K+L I+ + G Sbjct: 301 DELDLSIYSKFLLKRHNILTLYDLFKIDKRVLERFYNISYKTLQSIERKMVKYG 354 >UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella uncinata RepID=Q2WGF4_SELUN Length = 245 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 9/215 (4%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG-VLHEY 68 + ++ H++ + P + G TLG A+RR G T + HEY Sbjct: 14 RCIEPKVDNERPCHSRSIIPPPKIGQASTLGIAMRRAPPGESEGACTTPAGSPERINHEY 73 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 GV+E + E +NLK +A+ + G G V A D + I+ P Sbjct: 74 PAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGIIYPAQ 133 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 +T + S +V+ G GY + + + P DA P+ Y++ Sbjct: 134 HAATVTRK-IRSSTGSRVEGGCGYRRRNMVEYQKGSPPP------DAVSMPIRNANYSIH 186 Query: 189 AARVEQRTDLDKL-VIEMETNGTIDPEEAIRRAAT 222 + ++ E T+G+ P EA A+ Sbjct: 187 RLESHSGGIMKEMPPPEARTDGSPTPGEATYEASR 221 >UniRef50_Q4N9I8 DNA-directed RNA polymerase, alpha subunit, putative n=1 Tax=Theileria parva RepID=Q4N9I8_THEPA Length = 746 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 109/315 (34%), Gaps = 73/315 (23%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 L+ I + K + P G T+G+ L+ + S PG AV V+I +++ +T Sbjct: 274 LIRIPDTGRLYQKFYMGPYPVTMGWTIGSLLKVMTQSRCPGHAVVAVKIHN-MNKDTTVN 332 Query: 73 GVQEDILEILLNLKGL-------------------------------------------A 89 GV +D+L I LNLK + Sbjct: 333 GVADDLLNIALNLKMVSYTHFYTIYTHFTHLHIYTFTHLHIYTFTHLHTYTFLQIFTQFI 392 Query: 90 VRVQGKD---EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKV 146 V +Q + E + G + A + V++ P+ I L +E A + + IK+ Sbjct: 393 VSLQTLEYGKEARVRTVIKGPAMLCAGALEWPSFVKLCNPECYITKL-EEGAELDLEIKI 451 Query: 147 QRGRGYVPASTRI------------HSEEDERPI---GRLLVDACYSPVERIAYNVEAAR 191 + GRG+ A ++ H D + + G + I V Sbjct: 452 EWGRGFWMADSKGLYRLEEGANSLCHKRRDIKEVKEEGFYPTSCVFGGCRMIRLAVHKLM 511 Query: 192 VEQ--------RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 ++ +D+LV+E+ T+ + P+ + + + L F R V Sbjct: 512 GQRWCSLTYTCPDPMDQLVVEIWTDVSTTPKHVLEFGLSEVIAWLTEFK--RQVSHDVDF 569 Query: 244 EEKPEFDPILLRPVD 258 E + E + +D Sbjct: 570 EHEDEQLKDIWEKID 584 Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%) Query: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + + E KP D + +D L + + L+ + + DL+ + EL PNL Sbjct: 668 NAKNFEKFIPKPVEDTFENKDIDLLPVNSDIISSLRMSGFNVMADLMDYSVEELSHFPNL 727 Query: 296 GKKSLTEIKDVLASR 310 +S IK+ L Sbjct: 728 SIESAKIIKNFLTEH 742 >UniRef50_B9Q9G8 RNA polymerase Rpb3/Rpb11 dimerisation domain-containing protein, putative n=2 Tax=Toxoplasma gondii RepID=B9Q9G8_TOXGO Length = 1084 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 55/290 (18%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--------- 62 + I + + K+ + P+ G T+G+ ++ PG AV +++ Sbjct: 603 NVTIIPETGHLYQKLYIGPVPVTTGWTMGSLIKAFAAQRCPGHAVVALKLHAPRKPNAGG 662 Query: 63 ---------------GVLHEY---STKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLN 103 G E + V+ED+LEI LNLKG+A ++ ++ + + Sbjct: 663 RRGRKKTGEGEPQSAGGEAEAPMVTQLPNVREDLLEIALNLKGVAFETLRPRESACVRVK 722 Query: 104 KSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G + A I V + P+H I + +E + + +K++ GRG A E Sbjct: 723 AVGPQLLVAGMIDWPSFVRVGNPEHFIAKV-EEGGVLDLEMKLEWGRGAWLADLHGLYRE 781 Query: 164 DERPI---------------GRLLVDACYSPVERIAYNVEAA--------RVEQRTDLDK 200 +E G + + V R ++ Sbjct: 782 EEGVDTRCYKRRRIWEVDHRGFYPTSCIFGACTMMRLAVHKLMGTRFCQDRQASTNPTEQ 841 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD 250 LV+E+ T+ + P+E + A L + L VDLR +V + + D Sbjct: 842 LVLEIWTDASKSPKEVLAFA---LQDMLAWLVDLRRQLVEDVDWKTEDED 888 >UniRef50_B6K900 RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Toxoplasma gondii ME49 RepID=B6K900_TOXGO Length = 623 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 55/290 (18%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--------- 62 + I + + K+ + P+ G T+G+ ++ PG AV +++ Sbjct: 142 NVTIIPETGHLYQKLYIGPVPVTTGWTMGSLIKAFAAQRCPGHAVVALKLHAPRKPNAGG 201 Query: 63 ---------------GVLHEY---STKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLN 103 G E + V+ED+LEI LNLKG+A ++ ++ + + Sbjct: 202 RRGRKKTGEGEPQSAGGEAEAPMVTQLPNVREDLLEIALNLKGVAFETLRPRESACVRVK 261 Query: 104 KSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G + A I V + P+H I + +E + + +K++ GRG A E Sbjct: 262 AVGPQLLVAGMIDWPSFVRVGNPEHFIAKV-EEGGVLDLEMKLEWGRGAWLADLHGLYRE 320 Query: 164 DERPI---------------GRLLVDACYSPVERIAYNVEAA--------RVEQRTDLDK 200 +E G + + V R ++ Sbjct: 321 EEGVDTRCYKRRRIWEVDHRGFYPTSCIFGACTMMRLAVHKLMGTRFCQDRQASTNPTEQ 380 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD 250 LV+E+ T+ + P+E + A L + L VDLR +V + + D Sbjct: 381 LVLEIWTDASKSPKEVLAFA---LQDMLAWLVDLRRQLVEDVDWKTEDED 427 >UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1T9_9BRAD Length = 317 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%) Query: 228 LEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 L+ + L + P V + +L R VDDLEL+VRSANCLK + I+++G+LVQ++E Sbjct: 216 LQLGLALPEWPPPNVDFLSQQAGKLLER-VDDLELSVRSANCLKKDGINHVGELVQKSED 274 Query: 288 ELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWP 322 E+L+TPN G++SL EIKD+LA+ GL LGM L WP Sbjct: 275 EMLRTPNFGRRSLNEIKDLLAASGLHLGMDLSGWP 309 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/72 (45%), Positives = 51/72 (70%) Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 R +D+LEL+VR++ CLK + + +GD + +E ELL+ PN G+KSL E+K++L GL L Sbjct: 159 RSIDELELSVRTSLCLKNDDVRLVGDFARNSEAELLRIPNFGRKSLNELKEILGQVGLQL 218 Query: 315 GMRLENWPPASI 326 G+ L WPP ++ Sbjct: 219 GLALPEWPPPNV 230 >UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Tax=Gammaproteobacteria RepID=A3Y4L0_9VIBR Length = 82 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 58/62 (93%), Positives = 62/62 (100%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQ+++THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQINTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 ID 62 I+ Sbjct: 61 IE 62 >UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=Q7UWL0_RHOBA Length = 500 Score = 98.0 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 4/89 (4%) Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E + L PV + EL+VRS NCL+ I IGDL + +E ELL + N G+ Sbjct: 334 DEEAQRRNDRLAQTLNMPVANFELSVRSRNCLQKMGIETIGDLTRHSEQELLSSKNFGET 393 Query: 299 SLTEIKDVLASRGLSLGM----RLENWPP 323 SL EI+++L+ +GLSLG + N PP Sbjct: 394 SLVEIREMLSQKGLSLGQFAGEKKSNDPP 422 Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 228 LEAFVDLRDVRQPEVKEE--KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 L F + P V P+ +L RP+ DL L+VR+ C+ I+ IG+L+++T Sbjct: 409 LGQFAGEKKSNDPPVDTSHMSPDEQALLERPIADLNLSVRARKCMTRLQINSIGELIRKT 468 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLS 313 ++L+ N G SL E+++ L GL Sbjct: 469 GDDMLECKNFGVTSLNEVREKLGDLGLK 496 >UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q053_9BACT Length = 380 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 5/169 (2%) Query: 152 YVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTI 211 + A + ED+ I P + AY E D + E + Sbjct: 198 FQMAFNYDIAGEDDLAIEYYERCTNLRPAHKNAYMNLGILYEDNGKYDDAIFCYE---AV 254 Query: 212 DPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLK 271 E + A+ + +A ++ V E +++ +L P+ D EL+VRS NCL+ Sbjct: 255 LDVEPMHERASFCLKSAKASSEM--VFDEEASKKQGHEGDVLNIPISDFELSVRSRNCLE 312 Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 IH + DL + +E +LL N G+ SL EIK +L +GL LG + Sbjct: 313 KMNIHTLRDLTRISEPDLLTFKNFGETSLNEIKAILIQKGLQLGQSYDG 361 >UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alpha chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B80 Length = 458 Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%) Query: 212 DPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLK 271 DP + A + + EA + + PE ++ +L P+ D EL+VRS NCLK Sbjct: 269 DPRD---ERAKLFVKDSEASLTMHY--SPEDEQLTQANRVVLEIPITDFELSVRSRNCLK 323 Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 I +GDL + TE +LL + N G+ SL EI+ ++ ++GL +G L+ Sbjct: 324 RMNIRTLGDLTRVTEPQLLASKNFGETSLDEIRAIMVTKGLRIGQSLDQ 372 Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 42/72 (58%) Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + PE L +PV DL L+VR+ C+ I +G+LVQRT ELL+ N G+ SLTE Sbjct: 384 QNLSPEEQATLGKPVSDLNLSVRARKCMNRLNIGTLGELVQRTADELLEAKNFGQTSLTE 443 Query: 303 IKDVLASRGLSL 314 +++ L L L Sbjct: 444 VRERLQQFNLKL 455 >UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R234_9PLAN Length = 440 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 33/78 (42%), Positives = 46/78 (58%) Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E + +L PV D EL+VRS NCL+ + +GDL + +E ELL + N G+ Sbjct: 274 DEEAQRRNDRLAQVLSIPVTDFELSVRSRNCLQKMGVRTLGDLTRTSEQELLASKNFGET 333 Query: 299 SLTEIKDVLASRGLSLGM 316 SL EI+D+L S+GL LG Sbjct: 334 SLVEIRDMLHSKGLELGQ 351 Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 227 QLEAFVDLRDVRQP--EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 +L F + V +P ++ P+ +L RP+ +L L+VR+ C+ + IG+LV++ Sbjct: 348 ELGQFAAEKAVAEPVLDLASMSPDEQALLERPISELNLSVRARKCMARLGLTLIGELVRK 407 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 T +LL+ N G SL E+++ L + G+ L Sbjct: 408 TGDDLLECKNFGVTSLNEVREKLTTLGIKL 437 >UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD subunit n=2 Tax=Planctomyces RepID=C1ZD20_PLALI Length = 319 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 49/85 (57%) Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 ++ + +L RPV D EL+VRS NCL + IH +GDL + +E +LL+ N Sbjct: 139 EMYYDDDMARNEARMAQLLSRPVTDFELSVRSRNCLASMDIHTLGDLTRVSESDLLQGKN 198 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE 319 G+ SL EI+D++ GL +G L+ Sbjct: 199 FGETSLVEIRDLMQQHGLKVGQNLQ 223 Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 40/72 (55%) Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + P+ +L RPV DL L+VR+ C+ I +G+LVQ++ ELL T N G SL E Sbjct: 245 NDLSPQEQALLSRPVSDLNLSVRARKCMARLQIGTLGELVQKSADELLATKNFGVTSLNE 304 Query: 303 IKDVLASRGLSL 314 I+ L L L Sbjct: 305 IRAQLTEHNLKL 316 >UniRef50_Q06FN2 Putative DNA-directed RNA polymerase subunit alpha-like 1 n=3 Tax=Pelargonium x hortorum RepID=RPAL1_PELHO Length = 574 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 16/234 (6%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY--STKEGVQ 75 + + L PL L LR LL+ + T +I G+Q Sbjct: 19 HNDLLYGRFALSPLTAKESRLLKKGLREALLTGILCLRFTHAKIQNACKNLNLMNIVGIQ 78 Query: 76 EDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 E + EIL N + + + GK + L+ G A DI +++ I Sbjct: 79 ESLDEILKNFGKIILTGKLEEFVGKGPFVAILDVRGPLNAMAVDIELPPGIKVEIETQHI 138 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 +T E + ++++ S+ E +D P++++ +++ Sbjct: 139 ATIT-EPIPFVVELRIE------LVSSTSKGETGITDEEGFSIDPN-PPIQKVNSSIQGY 190 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 +T L IE+ + P +A+ + + + + + + E+++ Sbjct: 191 EYGGQT-FQTLFIEILSTSPTVPNKALLLVSMKIMNLFQIVLQAKYLDYKELEK 243 Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 173 VDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 +D+ ++PV+ + +E+ E +T +L +E+ T +P+EA+ A+ + E F+ Sbjct: 291 IDSNFTPVQNLDCRIESYEEEGQT-FQRLFLEIWTKSPTEPQEALWEASAKILELFSLFL 349 Query: 233 DLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 + ++K+ ++ + + L L Sbjct: 350 QTSKENEKDLKQIIKDWTENKRKHQEVLRL 379 >UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14PS2_SPICI Length = 111 Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 50/82 (60%) Query: 233 DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 ++++ ++ ++ E + +L +DDLE+T R+ CL+ I+ + DLV +TE E+ Sbjct: 28 EIQEQITIWLEMDETERNQLLNHSIDDLEITQRTQICLEKAKIYRLSDLVSKTENEIKNI 87 Query: 293 PNLGKKSLTEIKDVLASRGLSL 314 NLG+KSLTEIK+ + GL Sbjct: 88 KNLGEKSLTEIKEKMHELGLHF 109 >UniRef50_Q8SL86 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena viridis RepID=RPOA_EUGVI Length = 214 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 72/186 (38%), Gaps = 45/186 (24%) Query: 39 LGNALRRILLSSMPGCAVTEVEIDGVL-------------HEYSTKEGVQEDILEILLNL 85 N LRRILL G ++I G + +E+S E + E + ++ LN+ Sbjct: 35 FANQLRRILLGKSEGLRF--LKISGFIANKNSKFSVYQKINEFSEFEEINESVFQLFLNI 92 Query: 86 KGLAVRV---QGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 K + + TL + DI +++++K I L+ + Sbjct: 93 KNIDLYYRSCDANKRFFGTLEAYYPKTYSQDDIILSKNIKLIKKNQHIFSLSSLKLKMKF 152 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 ++ ++G G + ++PV+R+ Y +E ++ ++V Sbjct: 153 ILEAKKGIG-----------------------SFFTPVKRVNYIIEENKLSFS----RVV 185 Query: 203 IEMETN 208 +E+ET+ Sbjct: 186 LELETD 191 >UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWM7_MONSK Length = 324 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 23/154 (14%) Query: 93 QGKDEVILTLNKSGIGPVTA--ADITHDGDVEIVKPQHVICHLT---------DENASIS 141 + K+ G ++A + +++ P+ + + + Sbjct: 174 KNKNNQSSVFVLRGKHLISADQRTNQNPNFAQLINPEQYLATILPIQKTATGLSKFPEFE 233 Query: 142 MRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE------QR 195 + K+ +G + + ++EE G + PV+++ Y VE + +R Sbjct: 234 IEYKIGKGNLFENLDLQSNNEEFLLNSGP------FFPVKKVNYTVEDIKNSTNNFLWER 287 Query: 196 TDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + + E+ T+G++ PE+A+ +A IL + + Sbjct: 288 GFSECVFFEIWTDGSLHPEKALSQAFDILLDFFQ 321 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 9/73 (12%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VL 65 E S + K L L++G G T+ NALRR+LL + G +T+V+ + L Sbjct: 34 TFENSSLHYGKFYLSGLKKGQGITVANALRRVLLYDIMGLGITKVKFNSKNNENLSSQKL 93 Query: 66 HEYSTKEGVQEDI 78 HE+ST G++E I Sbjct: 94 HEFSTISGIRESI 106 >UniRef50_Q8SL88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena stellata RepID=RPOA_EUGST Length = 213 Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 43/183 (23%) Query: 40 GNALRRILLSSMPGCAV-----------TEVEIDGVLHEYSTKEGVQEDILEILLNLKGL 88 GN LRR LL + G +++ ++EYS E V +L++ N + L Sbjct: 38 GNLLRRTLLKDLEGLRFGNSSIFISRSFSKIPYYHRVNEYSDIEQVNPSLLQVFSNFRNL 97 Query: 89 AVRVQG---KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIK 145 + + + + DI ++ +V P + + + + + Sbjct: 98 HIFSSKPFYRKTSYSMIKVLTSRSYFSKDILLPNNLYVVNPDVQLFEFLSKRYKLRIISE 157 Query: 146 VQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 + +G G +SP++++ Y VE L++E+ Sbjct: 158 ICKGSG-----------------------KSFSPIKKVNYVVE------GIPYASLLLEI 188 Query: 206 ETN 208 T+ Sbjct: 189 YTD 191 >UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6I0_ACIDE Length = 222 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 245 EKPEFDPILLRPVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + DPIL RP+ ++ ELT L A +H +GDLVQ + L++ ++ I Sbjct: 133 PEALLDPILFRPISEIYELTDPVIALLVAAGVHRLGDLVQMSPTALMRIRGFDVLAMERI 192 Query: 304 KDVLASRGLSLGMRLENW 321 ++ L GL +GM L W Sbjct: 193 EEGLTIFGLKVGMALPGW 210 >UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putative n=3 Tax=Toxoplasma gondii RepID=B9PR73_TOXGO Length = 837 Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 S A NALRR LS + A++ V+I+G HE+ + G++ED Sbjct: 51 HNSGCSAFFYFHTCFSSVAPVFLNALRRTSLSRLESLAISAVKIEGAKHEFYSLPGIRED 110 Query: 78 IL-EILLNLKGLAVR 91 I+ +I NL + R Sbjct: 111 IVDDIFNNLGKIVFR 125 Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 97 EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYV-PA 155 + L G A I VE+V + + + ++M K++R R YV P Sbjct: 281 PLRAKLRVRGPLVAVAGHIQLPEGVEVVNKNQYLFTV-NAGYYVNMDFKIERIREYVMPE 339 Query: 156 STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKL 201 E D G + +PV AY E T D++ Sbjct: 340 FGYDSLERDRDKEGFMYFTNYVAPVPIFAYAAERRGEAVHTKWDEV 385 >UniRef50_Q8SL90 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena myxocylindracea RepID=RPOA_EUGMY Length = 207 Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 44/200 (22%) Query: 37 HTLGNALRRILLSSMPGCAVTEV--------EIDGVLHEYSTKEGVQEDILEILLNLKGL 88 + N +RRILL + V+ + + +HE++ E V+ +++ L+ LK + Sbjct: 34 LSFSNLIRRILLKEIYNFKVSTISIFLFNSNKFCYKIHEFTKVEEVKNNLVSFLILLKEI 93 Query: 89 AVRVQGK---DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIK 145 R K L V DI + +I+ + + L + ++ + ++ Sbjct: 94 KFRSYYKLKTKRTFALLKIKQFTQVFLTDIILPNNFKILSIDNNLIKLNSLDINLKVLLE 153 Query: 146 VQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 + + +GY ++PV+++ Y +E V E+ Sbjct: 154 LHKSKGY-----------------------NFNPVKKVNY-IEENNV---------YFEI 180 Query: 206 ETNGTIDPEEAIRRAATILA 225 TN T P E + ++ I+ Sbjct: 181 YTNQTSTPLEVLVKSLKIIK 200 >UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=A3ZU45_9PLAN Length = 93 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 +E L ++ LTVR+ NCL+ I + DL+ T +LL N G+K+L E+ Sbjct: 11 QESESLMSKLEMSTAEIGLTVRTTNCLEERGIFTVRDLLNCTRADLLSISNFGEKTLDEV 70 Query: 304 KDVLASRGL 312 L S G Sbjct: 71 YSSLESIGF 79 >UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQ35_ALKMQ Length = 912 Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 + L L+ RS N L+ E IH DL+ ++ +++ ++G KSL EI + + S Sbjct: 3 SHNYSDSISTLNLSTRSYNTLRREGIHTTNDLLNCSKDDIINFRSVGVKSLEEIVNAIDS 62 Query: 310 RG-LSLGMRLEN 320 L M EN Sbjct: 63 LNKYKLEMYSEN 74 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 36/56 (64%) Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 + +++L L+VR+ NCLK+ ++ Y L+ + EL+ PN+G+K+L E++ + Sbjct: 92 KYIDIAIENLNLSVRAFNCLKSTSVDYYSQLIDVLDEELIAIPNMGRKTLLELEHI 147 >UniRef50_Q2EEW7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOA_HELSJ Length = 246 Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 36/249 (14%) Query: 8 FLKPRLVDIEQVSSTHA-KVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +K + ++ +A + PL G +LG +R +LL P AV + + + Sbjct: 2 LIKQLSSSYNEYNNNYAASFLIGPLPEGIAQSLGFNIRSVLLKEFPYFAVKNIRFNPENN 61 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKS--------------------- 105 Y T G +E I I+ + G+ + L KS Sbjct: 62 NYKTHIGTKESIETIINTILGIDFNYSFDFYKAMGLYKSKPKALFQENLSKAKFLCSAKQ 121 Query: 106 -GIGPVTAADITHDGDVEIVKPQHVICHLTDENAS-ISMRIKVQRGRGYVPASTRIHSEE 163 G G + A D+ ++ P +I H+T +N + + G + I E Sbjct: 122 VGEGILYAKDLMLPVGIKCTTPYKIIAHVTKQNFLGFTFELGFLFG-----LNNNIKFEN 176 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 I P++ I + ++ + + +++ T ++ P + I+ + + Sbjct: 177 KLYSIKTY-------PIQNINIEIINSKKSFNLNSESIILSFTTKSSLQPIDVIKILSYL 229 Query: 224 LAEQLEAFV 232 L + + Sbjct: 230 LLNKHLILI 238 >UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5N0_9BURK Length = 77 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 P+D L+L R N L + I +GDL + +LLK P G KSL E++ L G Sbjct: 10 SDAPLDLLDLNFRVTNRLASAGIFRVGDLCVCSASDLLKMPGFGVKSLQEVERSLQRAGR 69 Query: 313 SL 314 SL Sbjct: 70 SL 71 >UniRef50_A6C7Z0 Serine/threonine protein kinase n=2 Tax=Planctomycetaceae RepID=A6C7Z0_9PLAN Length = 1405 Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 217 IRRAATILAEQLEAFVDLRD-----VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLK 271 A +L F + + E + ++ D + +L L RSAN L Sbjct: 772 FDNAEEMLRAWRNCFEGIDEPGALSDHADETRLQELLADAEFETQIPELGLGSRSANALD 831 Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 I + DL+ L++ +G K+ EI + LG + P+S++D Sbjct: 832 RANILTVEDLLTVPMRRLMRLRGVGNKTRREITSAVKILRDRLG--KPDRDPSSLSD 886 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 DDL ++ R N I +GDL+ +TE +LL+ +G K++ E++D L +R L + Sbjct: 1334 DDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILE 1393 Query: 318 LENWPPAS 325 E S Sbjct: 1394 PEEDEADS 1401 >UniRef50_P48337 DNA-directed RNA polymerase subunit alpha n=2 Tax=Euglena gracilis RepID=RPOA_EUGGR Length = 216 Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 72/194 (37%), Gaps = 44/194 (22%) Query: 43 LRRILLSSMPGCAVTEVEID-----------GVLHEYSTKEGVQEDILEILLNLKGLAVR 91 +RR LL + +T V V+H + E +++ +LEI K L + Sbjct: 39 IRRYLLLDLESWNITNVMFFVTNNLKNTSTFHVVHNFLGLEELKQSLLEITKKFKLLRFK 98 Query: 92 VQGK----DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQ 147 + K ++ LN + + DI ++++ + ++ N ++ + +K++ Sbjct: 99 LCSKSYQGNKFFAVLNAFEVKDFLSGDIIFPPHLKLLNSRELLFTKISFNITLKILLKIE 158 Query: 148 RGRGYVPASTRIHSEEDERPIGRLLVDACY-SPVERIAYNVEAARVEQRTDLDKLVIEME 206 + A + P++R+ +E ++ ++ Sbjct: 159 AKK------------------------ASFQKPIKRLNLIIEKDEFFDN----YMIFDLT 190 Query: 207 TNGTIDPEEAIRRA 220 T+G++ P A +A Sbjct: 191 TDGSVTPFNAFIKA 204 >UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX76_9BACT Length = 145 Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 221 ATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGD 280 A +AE + ++ R + P P+ DL L R AN L+ + +G+ Sbjct: 46 AEAVAEHIAKITEIAATRALAALDRPSRVLP-NHTPIRDLPLPTRIANGLRRMGVRTLGE 104 Query: 281 LVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L ++L +PNLG++SL +++ VL G SL Sbjct: 105 LTALHAEDILLSPNLGERSLDQLRHVLGLIGRSL 138 >UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F4D Length = 808 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 39/75 (52%) Query: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + + + L V L+L +RS NCL++ I I DL++ ++ ELL+ NL Sbjct: 123 EFPIGSLGSRFNMSNNKLELDVVVLDLDIRSTNCLRSRGIDKIEDLLKLSDTELLRIDNL 182 Query: 296 GKKSLTEIKDVLASR 310 G++SL I D ++ Sbjct: 183 GRRSLKLIIDSISKL 197 >UniRef50_Q8SL92 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena granulata RepID=RPOA_EUGGA Length = 216 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 40/198 (20%) Query: 39 LGNALRRILLSSMPGCAVTEVEIDGVLH------------EYSTKEGVQEDILEILLNLK 86 LGN R+ LL S G + E V H E+S E V E ++ Sbjct: 36 LGNIFRQFLLGSFEGLVINEKRFY-VSHTNSLYKDFYLVNEFSLLEEVLEPFYDVWTVFD 94 Query: 87 GLAVR--VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRI 144 L + L G G + + DI ++ ++ + L ++ I + + Sbjct: 95 NLRFKEKFSLSKRYYARLLTYGSGEINSKDIIVPSNLSLL-ENKSLFTLITDSLCIDVIL 153 Query: 145 KVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIE 204 ++ G + ++ VER+ Y +E + + +KL ++ Sbjct: 154 QILSKNG-----------------------SPFNGVERVNYILENSNSG-NINYNKLYLD 189 Query: 205 METNGTIDPEEAIRRAAT 222 + T + P EA+ Sbjct: 190 ISTRYFLSPMEALFECFR 207 >UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9H2_9ACTN Length = 1373 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 DDL ++ R N I +GDLV ++E +LL+ +G K++ E++D L + L Sbjct: 1224 DDLGVSQRWTNKFSEVGIETVGDLVGKSEEDLLRIDGIGAKAIEELRDGLEAHDL 1278 >UniRef50_P34778 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena longa RepID=RPOA_ASTLO Length = 220 Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 49/208 (23%) Query: 39 LGNALRRILLSSMPGC-AVTEVE---------------IDGVLHEYSTKEGVQEDILEIL 82 GN +RR LL ++ +T ++ I ++E+ E ++E++ I Sbjct: 35 FGNEIRRSLLLNIKKTMTITNIKFFISKSKSKHPKKLKIFHPVNEFFDIEEIKENLSNIC 94 Query: 83 LNLKGLAVRVQGKDEV----ILTLNKSGIGPVTAADITHDG--DVEIVKPQHVICHLTDE 136 +NLK L + K+ + LN +A DI +++IV + + + + Sbjct: 95 INLKKLRFKFNPKNNKEKKTFIILNSFNKKSFSAKDIIIPSTSNLKIVNLKEHLFNKISQ 154 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRT 196 ++ + IK++ Y Y+P++RI + +E Sbjct: 155 KINLKVLIKIENNENY-----------------------FYNPIKRINFILEK----NNN 187 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATIL 224 +++++ ++ I+P +A + L Sbjct: 188 IGKYIILDLNSDININPFKAFIESLKYL 215 >UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 Length = 785 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 + +++L+L+ R L+ I L + T+ ELLK +GK +L EIK V Sbjct: 155 SHEVDNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGIGKAALEEIKAV 211 Score = 41.7 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 I P+ L L++ + L+ I IGD+ L + P +GK + I + + S Sbjct: 240 ISEHPISKLPLSMSIIHRLELAGIKTIGDITGENFSRLQEIPRIGKVTAKRILEAIQSY 298 >UniRef50_Q5JJF4 DNA-directed RNA polymerase subunit D n=2 Tax=Thermococcus RepID=RPOD_PYRKO Length = 259 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 88/263 (33%), Gaps = 55/263 (20%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTK 71 I + K + G NALRR +LS +P AV EVE + + Sbjct: 3 EFKILEKRPDSIKFIVS----GVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEI 58 Query: 72 EGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADIT-HDGDVEIVKP 126 + + I L + V L+L G G V + D+ DGDV+ P Sbjct: 59 --IAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANP 116 Query: 127 QHVICHLTDENASISMRIKVQRGRG-----------YVPASTRIHSEED----------- 164 I L E ++ + GRG Y T+IH +D Sbjct: 117 NIPIVKLA-EGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELA 175 Query: 165 ----------ERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKL----VIEMETNGT 210 + I + A Y P + + + + + V +ETNG Sbjct: 176 ERRGLPVEESDEEIVITTIKAFYLP-RKF-----EEHMGKGIREEIVPGSFVFTVETNGE 229 Query: 211 IDPEEAIRRAATILAEQLEAFVD 233 + EE + A IL + + F++ Sbjct: 230 LPVEEIVSIALKILMRKSDRFIN 252 >UniRef50_B1INQ5 Dna-directed rna polymerase alpha chain (Rnap alphasubunit) (Transcriptase alpha chain) (Rna polymerase subunit alpha) n=4 Tax=Clostridium botulinum RepID=B1INQ5_CLOBK Length = 69 Score = 57.5 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 259 DLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 +L L++R+ N L+ I+ + DL ++ +L + +G SL +I+ L + + Sbjct: 11 ELNLSIRAYNSLRNMGINTLEDLSMYSKKQLYQFKGIGIVSLRKIEKGLDKKNMK 65 >UniRef50_D1H4E8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4E8_VITVI Length = 110 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVT 57 K + + + L P G T+G +RR L + G +T Sbjct: 16 KCVESRVNNKRLCYGRFILSPFIIGQADTIGIVMRRTLFGEIEGTCIT 63 >UniRef50_Q6VAG4 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=Q6VAG4_BACUN Length = 137 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 253 LLRPVDDLELT----VRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + + VD L+ +R + I I DL + +L++ +G KS+ EI+DVL Sbjct: 6 INQSVDTLDFGSKHGLRIQQVCRGFNIKTIRDLCKWPGRDLVRLRGIGGKSIDEIEDVLK 65 Query: 309 SRGLSLGM 316 L LGM Sbjct: 66 KYNLRLGM 73 >UniRef50_B2J0X0 RNA polymerase, alpha subunit domain protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J0X0_NOSP7 Length = 258 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%) Query: 226 EQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 QL + E+ + + ++ L L + LK ++ I DL + Sbjct: 158 NQLVEVANSNVHPVEEINGDNKPNGVVDENSIESLNLKRNTYTALKDAKVNTIEDLNKYG 217 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L NLG KS+++I + L RG+ L Sbjct: 218 VTGLRTLKNLGNKSVSQIVEALLFRGIEL 246 >UniRef50_Q8U0E4 DNA-directed RNA polymerase subunit D n=7 Tax=Thermococcaceae RepID=RPOD_PYRFU Length = 261 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 52/152 (34%), Gaps = 27/152 (17%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTK 71 V I + K L +G + NALRR +L +P AV EVE + + Sbjct: 5 EVQILEKKEDSIKFVL----KGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEI 60 Query: 72 EGVQEDILEILLNLKGLAVRVQ-----------GKDEVILTLNKSGIGPVTAADITH-DG 119 I L + + V L+L G G V + D+ D Sbjct: 61 ---------IAHRLAMIPLTTPVDRFELDALELDDYTVTLSLEAEGPGIVYSGDLKSDDP 111 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRG 151 DV+ V P I L E + + GRG Sbjct: 112 DVKPVNPNIPIVKLA-EGQRLVFNAYAKLGRG 142 >UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6A3_9PLAN Length = 69 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 263 TVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 +VR+ N LK +H IGDLV+ + +LL PN G+++L E D Sbjct: 2 SVRTVNYLKEHKVHTIGDLVKLKQEDLLSIPNFGEQTLQECID 44 >UniRef50_A7M3S5 Putative uncharacterized protein n=7 Tax=Bacteroidales RepID=A7M3S5_BACOV Length = 248 Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 227 QLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 + + +++ + + + E L +P+ +++T + L++ I Y+GDL+Q E Sbjct: 140 YINSVQRVKEGLEIALDNIQAEEVHYLSQPIFSMKMTPIVRSKLESHGILYVGDLIQLNE 199 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 L++ LG +L IK L G+ GM + Sbjct: 200 EYLMEIWGLGPVALERIKTKLNENGVWFGMDV 231 >UniRef50_UPI000197AD37 hypothetical protein BACCOPRO_01772 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AD37 Length = 251 Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%) Query: 224 LAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQ 283 +A +++ ++ + V E P L R + DL +T + L E I Y+G+L+ Sbjct: 135 MANYVDSIKSIKTGLEIAVNNIDAEEIPFLSRAITDLGITPSARERLAKEGILYVGELIH 194 Query: 284 RTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 E L+ +G ++ IK+ L + GM + Sbjct: 195 LNEDYLMDIWGVGPVTIDRIKNKLNENSVWFGMDV 229 >UniRef50_C5SIY2 Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIY2_9CAUL Length = 130 Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%) Query: 249 FDPILLRPVDDLELTVRSANCLKAEA------------IHYIGDLVQRTEVELLKTPNLG 296 L P++ L+L R+ LK + + VQ T+ +L PNLG Sbjct: 1 MKDKLDAPIEVLKLCRRTYCALKRREAQGMHPEITYDPVLTVRQAVQLTDRDLRNMPNLG 60 Query: 297 KKSLTEIKDVLASR 310 + S+ E+KD LA+ Sbjct: 61 RVSIKELKDKLAAF 74 >UniRef50_UPI000197BA40 hypothetical protein BACCOPRO_01755 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197BA40 Length = 89 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 268 NCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L I + DL ++TE EL P + K+L IKD+LA +GL GM E Sbjct: 25 KALMQAGIVTVEDLCRKTEEELSSIPFIKGKNLQAIKDMLAEKGLHTGMSQEE 77 >UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VLF1_9RHOB Length = 562 Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPA 324 E I +G VQ T ++L+ LGKKS E + L + GLSLGM L W Sbjct: 3 KEGIVLVGSFVQLTAGDILRKQGLGKKSYREARATLEALGLSLGMELCGWDEE 55 >UniRef50_UPI00016C679A hypothetical protein CdifQCD-7_20312 n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C679A Length = 70 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 26/51 (50%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + L+L+ + N L I I L T +LLK +G KSL EIK L+ Sbjct: 2 NQLKLSKKIVNHLIKANIDSIESLKTMTSNDLLKINGIGPKSLEEIKQALS 52 >UniRef50_Q97B93 DNA-directed RNA polymerase subunit D n=3 Tax=Thermoplasmatales RepID=RPOD_THEVO Length = 271 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 55/271 (20%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI--------DGV 64 V I ++S + ++ + NALRR L++ +P A+ V +G Sbjct: 2 EVKIFKLSDKYMSFEIDGITPSQA----NALRRTLINDIPKLAIENVTFHHGEIRDAEGN 57 Query: 65 LHEYSTKEGVQEDI----------LEILLNLKGLAV---RVQGKDEVILTLNKSGIGPVT 111 +++ S+ E + ++ LN + + V ++NK G V Sbjct: 58 VYD-SSLPLFDEMVAHRLGLIPLKTDLSLNFRDQCSCGGKGCSLCTVTYSINKIGPASVM 116 Query: 112 AADIT--HDGDVEIVKPQHVICHLTDENASI------------SMRIKVQRGRGYVPAST 157 + DI D+ V P I L + A + + +V G Y Sbjct: 117 SGDIQAISHPDLVPVDPDIPIVKLGAKQAILITAEAILGTAKEHAKWQVTSGVAYKYHRE 176 Query: 158 RIHSE---------EDERPIGRLLVD---ACYSPVERIA---YNVEAARVEQRTDLDKLV 202 ++ ++ P L D ++ E+ V+ + D + + Sbjct: 177 FEVNKKLFEDWAKIKERCPKSVLSEDENTIVFTDDYGCNDLSILFESDGVQIKEDDSRFI 236 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 ET+G++ EE + A L ++ V+ Sbjct: 237 FHFETDGSLTAEETLSYALNRLMDRWGILVE 267 >UniRef50_A8SD09 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD09_9FIRM Length = 1010 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 21/43 (48%) Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 L+ R+ N L I + L + +E EL LG K+L EI Sbjct: 10 NLSTRAINILARNNILTLSQLKECSEKELRSMRGLGGKTLDEI 52 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 + + + +++++ R + L I LV+ + KT N+G+K++ I+ Sbjct: 80 TPEILNSLSYHQITEIDMSARGFHYLTLMGCTTIAQLVRLKREDFQKTANIGEKTIEIIE 139 Query: 305 DVLASRGLSLG 315 + L G Sbjct: 140 ESTKKWLLENG 150 Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 + V +L L+ R+AN L + + + + +L T +G ++ +I Sbjct: 179 TSEMRTSLSFHNVSELNLSSRAANALIRGNYTTLDKIAELSIPKLTATKGIGLNTVNDII 238 >UniRef50_C1EL51 Conserved domain protein n=81 Tax=Bacteria RepID=C1EL51_BACC3 Length = 95 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L+ + L+ IH + +L + +E E+LK +G SL +++ L GLS Sbjct: 42 LSAPARRALEHHGIHNVEELSKYSEKEILKLHGMGPASLPKLRKALEESGLSF 94 >UniRef50_Q2SGK7 Serine/threonine protein kinase n=2 Tax=Gammaproteobacteria RepID=Q2SGK7_HAHCH Length = 1385 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 11/112 (9%) Query: 217 IRRAATILAEQLEAFVD-LRDVRQPEVKEEKPE---FDPILLRPVDDLELTVRSANCLKA 272 AA +L + F+ ++ R P V E P + + LEL+ ++ + L Sbjct: 741 FATAADMLRAWRQVFLQASKESRHPTVHGEVPTCPVEEAQQDTQIGLLELSPQALDALSR 800 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPA 324 ++ + DL+++ ++ P +G K+ E+ +++ E WP Sbjct: 801 RNLNTVADLLKQNRSKVRAWPGVGIKTRNEVSELIRKLQ-------EKWPNE 845 >UniRef50_A3ZPK6 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPK6_9PLAN Length = 124 Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%) Query: 211 IDPEEAIRRAATI-LAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR-------PVDDLEL 262 I +A A I L F D+ + E K + + P+ L L Sbjct: 4 ITAAQAAMVARQIELQLAQGNFAAADDILARCLAEVKSQRRELCDEYALPREVPLARLNL 63 Query: 263 TVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + N L+ I+ +GDL T +LL PNLG+ +E++D + Sbjct: 64 EPQILNALEYCEINTVGDLQGVTYEDLLSVPNLGQSRASEVRDSVRQL 111 >UniRef50_D0TJA1 Predicted protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJA1_9BACE Length = 193 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVE----LLKTPNLGKKSLTEIKDVLASRG 311 V D +L R+ N L+ I+ + DL++ T+ + LLK G SL +K+ L +G Sbjct: 120 VSDFDLDTRTINMLRKMEIYTLEDLLRYTKDKGLQVLLKYRGFGAHSLALLKESLIKKG 178 >UniRef50_B5ID28 RNA polymerase n=3 Tax=Euryarchaeota RepID=B5ID28_9EURY Length = 273 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 66/277 (23%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 I ++ + K + +G ++ NALRR L++ +P A+ +V + E Sbjct: 2 EFHILELQDRYIKFEI----KGITPSVANALRRTLINDIPKLAIHKVIFH--HGQIRDME 55 Query: 73 G-VQEDIL----EIL------------LNLKGLAVRVQGKDE---------VILTLNKSG 106 G V + EI+ LN+K R + V TLNK G Sbjct: 56 GNVYDSSTPLFDEIIAHRLGLIPLPTDLNMK---FRDECDHPPDEGCPLCTVTYTLNKHG 112 Query: 107 IGPVTAADITH--DGDVEIVKPQHVICHLTDENASI------------SMRIKVQRGRGY 152 V + D+ D + V P I L + A + + +V G Y Sbjct: 113 PATVYSGDLIPVGDEKFKPVDPLIPIVKLKEHQAILLEAEAIMGTAKEHAKWQVTSGVSY 172 Query: 153 VPASTRIHSEEDER---------PIGRLLVD---ACYS---PVERIAYNVEAARVEQRTD 197 +++D P + D ++ P + IA + + + T+ Sbjct: 173 KYHREIKVNKKDSELWEKVKKSCPKNVIKEDDKFIIFTDDIPCKEIA-EILSFENPEITE 231 Query: 198 LDK-LVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 D + E ET+G++ + + A L + + Sbjct: 232 DDSWFIFEFETDGSLKAIDTLEYAIKRLKTRFNTLRE 268 >UniRef50_UPI000197BA3F hypothetical protein BACCOPRO_01754 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197BA3F Length = 146 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 253 LLRPVDDLELT----VRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + + + ++ VR + I + DL +++ EL T L KKS++ I+ +L Sbjct: 6 ISKSIKSIDFGKQYGVRVQRIFQTNGIFTVRDLCSQSKQELRHTRYLSKKSISMIEKILG 65 Query: 309 SRGLSLGM 316 L LGM Sbjct: 66 KYALRLGM 73 >UniRef50_A9F5X1 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5X1_SORC5 Length = 1477 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%) Query: 219 RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL-----RPVDDLELTVRSANCLKAE 273 A + E + F + + P L PV+ L L R N L Sbjct: 755 TAEQMRTEWIACFAAAPSEAGADEADGAPPVAADLSIFTEATPVEALPLGAREKNALDRS 814 Query: 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 I + +L+ + +L +G+++ I+D Sbjct: 815 GIVTVRELLALPQNQLSAIRGVGRETARAIQD 846 >UniRef50_Q57648 DNA-directed RNA polymerase subunit D n=12 Tax=Methanococcales RepID=RPOD_METJA Length = 191 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 79/200 (39%), Gaps = 42/200 (21%) Query: 37 HTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ--- 93 + NA+RRI++S +P A+ +V I Y + ++IL L L + ++ + Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYI------YENSSSMDDEILAHRLGL--IPIKGKPLL 75 Query: 94 GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYV 153 + + TL K G V ++D+ + E+ I L + I + + G G V Sbjct: 76 ENEVITFTLEKEGPCTVYSSDLKSENG-EVAFKNIPIVKL-GKGQRIQIECEAIPGIGKV 133 Query: 154 PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDP 213 A + +A Y ++ D++ +ET G ++ Sbjct: 134 HAKWQ-------------PCNAVY----------------KQIADDEVEFFVETFGQMEA 164 Query: 214 EEAIRRAATILAEQLEAFVD 233 EE + A IL + E+F+ Sbjct: 165 EEILEEAVKILKNKAESFLQ 184 >UniRef50_D1C976 Helix-hairpin-helix motif protein n=7 Tax=Bacteria RepID=D1C976_SPHTD Length = 72 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L + L + DL + TE +LL+ +G K+L ++++ LA+RGL+ ++ Sbjct: 14 LAQPARRALLGAGYTRLEDLTRVTEDQLLQLHGIGPKALAQLREALAARGLAFAADTDD 72 >UniRef50_Q01V32 RNA polymerase, alpha subunit domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V32_SOLUE Length = 130 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVEL-LKTPNLGKK 298 P V + P+ + V+DL L+VR+ N L+A + +++ +L LG+K Sbjct: 8 PAVPDGDPKIVSLESA-VEDLGLSVRTRNALRAIGCDTVENVLAL---DLGSSVRGLGRK 63 Query: 299 SLTEIKDVLASRGLS 313 + E+ L +G Sbjct: 64 TKEELLVALELKGFR 78 >UniRef50_Q7M1B7 RNA polymerase chain n=1 Tax=Escherichia coli RepID=Q7M1B7_ECOLX Length = 94 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 33/55 (60%), Gaps = 21/55 (38%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCA 55 MQGSVTEFLKPRLVDI GFGHTLGN ILLSSMPG + Sbjct: 1 MQGSVTEFLKPRLVDI-----------------GFGHTLGN----ILLSSMPGYS 34 >UniRef50_A8H4Z2 RNA polymerase sigma factor n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H4Z2_SHEPA Length = 930 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 +L +P+++L L VR N + DL T+ +L PN G+KS ++ +L Sbjct: 279 SLLEKPLEELNLPVRLFNVFNVNGFTSLNDLKDITDKTMLSWPNFGRKSARDLYSLLLE 337 >UniRef50_C0JWW4 Alpha subunit of RNA polymerase n=1 Tax=Pycnococcus provasolii RepID=C0JWW4_9CHLO Length = 357 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 36/159 (22%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMP------GCAVT------- 57 + + + + ++ + N LRR+L+S P G T Sbjct: 44 CQKLTLHPKNEFQGTISFSDVPSHQPIRFSNFLRRVLISETPHLSLRVGFCGTWTTDFLR 103 Query: 58 -EVEIDGV----------------LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVI- 99 ID V L E G+ D+ ++ + L + + E + Sbjct: 104 QTTSIDFVYSNFFFKKRNGFRQKSLGELGYISGI--DLQDLTTQINQLPLVFTEQQEKLN 161 Query: 100 ---LTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 + L G G + AA + V + P V+ ++D Sbjct: 162 KSLIRLCVQGPGQIRAAHLHFPKGVYCLTPNVVLAEISD 200 >UniRef50_C6J496 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J496_9BACL Length = 64 Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L+ + L+A + + L + +E E+L+ +G S+ ++K+ L S+GL+ Sbjct: 10 LSAPARRALEANGVTTLEKLAELSEQEVLRFHGMGPASIPKLKEALRSKGLTF 62 >UniRef50_D2S452 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S452_9ACTO Length = 178 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 V DL L R+ L I L T EL+ LG S+ I+ V+ Sbjct: 13 TVSDLGLPTRAVTALARAGITTTAQLAALTRAELVAVNGLGPGSIAAIRRVVPE 66 >UniRef50_D1C4N8 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4N8_SPHTD Length = 193 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 P+++L+L+ R L +H I + + E L+ PN ++ E+ ++ R Sbjct: 95 PIEELDLSPRVLRLLHRYGLHTIAAVERVDEATLMLLPNFDARARHEVLRAISLR 149 >UniRef50_D1R556 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R556_9CHLA Length = 422 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 L P+ L L+ + CL+ I DL++ +L+ +G+ + EI+ L Sbjct: 133 FLDEPIHILGLSQHAEKCLEKNGKCLIQDLLKADTQDLIFLKGMGQGHIDEIQQTLKKY 191 >UniRef50_A5N5E6 Putative uncharacterized protein n=3 Tax=Clostridium RepID=A5N5E6_CLOK5 Length = 332 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 221 ATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGD 280 +I+ + E ++ + + E + L+ S N L + I + Sbjct: 36 ISIIRKYEELEAYSNEMENLKANNKMNEETELYDLC-KLLKFHTHSINALIHKNIRSVDK 94 Query: 281 LVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 L+ ++ E NLGK S IK+ ++ Sbjct: 95 LLSLSQEEFYAIKNLGKVSQKYIKECISEY 124 >UniRef50_C7RJ33 Serine/threonine protein kinase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ33_9PROT Length = 1413 Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 214 EEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAE 273 E A +L + + F D D + E + +L+ +V + N L Sbjct: 765 RERFDNAEDMLRDWRKIF-DQADTQTAADPFEVIALRATRETAIGELDYSVEAQNVLDRM 823 Query: 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 IH + +L+ V ++G K EI+ Sbjct: 824 GIHSVRELLAVDRVRFRYLKSVGDKVRKEIR 854 >UniRef50_Q8SL94 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena anabaena RepID=RPOA_EUGAN Length = 207 Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 38/177 (21%) Query: 39 LGNALRRILLSSMPGCAVTEV-----------EIDGVLHEYSTKEGVQEDILEILLNLKG 87 +G +RR L+ G +T+ ++ L+E++ E + E EI+ NL+ Sbjct: 35 IGTKIRRNLIKETKGTKITQASLFVLNKKSKEKLYHSLNEFTNIEEISEKTNEIIKNLER 94 Query: 88 LAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQ 147 L +++ K+ + + + + ++I IC + N I + +K++ Sbjct: 95 LKIKLVNKNLKKKIICITLTKENSFFKEIY-KTIKISNLNQKICTIKSHNVEIKLLLKIE 153 Query: 148 RGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIE 204 + +G ++P+E I + + E + L +E Sbjct: 154 KEKGIK-----------------------FNPIETINFIIPKKNNENNS---SLFLE 184 >UniRef50_D1VQ00 Putative uncharacterized protein n=1 Tax=Frankia sp. EuI1c RepID=D1VQ00_9ACTO Length = 251 Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 5/116 (4%) Query: 217 IRRAATILAEQLEAFVDL--RDVRQPEVKEEKPEFDPILLRPVDDLE--LTVRSANCLKA 272 + RA +L F D +R +V P PV L L+VR+AN LK Sbjct: 34 LVRAREVLVLGQSQFADQVREVLRAGQVPGWGLHELPAERAPVSALYALLSVRTANILKR 93 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 + ++ + L + LG + L EI+ LA L+ R++ P S A Sbjct: 94 APFLFAQEVAALPDEVLREFRGLGPRVLAEIRAALADPALA-NFRIDLASPESDAS 148 >UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospira RepID=B0SH17_LEPBA Length = 466 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE--EKPEFDPILLRPVDDL 260 I+++T + E A A L A + + + + + E + P+ ++ Sbjct: 349 IDIKTVSQYNQELASPEAREKLDRLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEI 408 Query: 261 -ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 LT R L+A I + L++ ++ EL K +GK + +I +L Sbjct: 409 PGLTPRIVGLLEAGGIKNVETLLEFSQEELSKISGIGKTTAEQILRLLRE 458 >UniRef50_C6Z4I8 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=C6Z4I8_9BACE Length = 226 Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE----VELLKTPNLGK 297 ++ E +L+ P+ +L++ R L+ I+ + DL++ + L + P +G Sbjct: 137 EQDIPSECVDLLVTPLGNLDINFRVLRALRKYNIYQLEDLLRFIKYNGFDALCRIPGMGM 196 Query: 298 KSLTEIKDVLASRGL 312 KS+ ++ L R + Sbjct: 197 KSVEQLYHTLKERNI 211 >UniRef50_B0R4Y2 DNA-directed RNA polymerase subunit D n=11 Tax=Halobacteriaceae RepID=RPOD_HALS3 Length = 248 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 89/248 (35%), Gaps = 43/248 (17%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTKE 72 V+ A+ + + F N +RR +L +P ++ V + + + Sbjct: 8 VEFVDRDDREARFVVRNITPAFA----NGIRRAILVDVPTLSIDTVRFVENSSVMFDEQL 63 Query: 73 GVQEDILEILLNLKGLAVRVQGK----DEVILTLNKSGIGPVTAADIT-HDGDVEIVKPQ 127 G L L + + + V L L+ G G + D+ +D +VE Sbjct: 64 G---------LRLGLVPLTTPEDYAAGEAVTLALDVEGPGTAYSGDLVSNDPEVEAADEN 114 Query: 128 HVICHLTDEN-ASISMRIKVQRGR-----------GY-------VPASTRIHSEEDERPI 168 I L D+ + + GR GY V + ++++D + + Sbjct: 115 IPIIELKDDQRLELEADAVMGHGRDHAKHQGGVAVGYRHLQRVHVVGDSPEYADDDPQML 174 Query: 169 -GRLLVDACYSPVERIAYNVEAARVEQRTDLDKL----VIEMETNGTIDPEEAIRRAATI 223 G + D P + ++ + +++ + V +E++G++ EE + RA Sbjct: 175 RGVIEEDDELVPTDDFDNDLTTRYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDT 234 Query: 224 LAEQLEAF 231 L ++ + Sbjct: 235 LVDRADEL 242 >UniRef50_D1VE21 Serine/threonine protein kinase n=1 Tax=Frankia sp. EuI1c RepID=D1VE21_9ACTO Length = 1583 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 P+D L+ R+ + +GDL+ E++ P G K+ E++ + Sbjct: 889 SDTPLDAAGLSPRAVSAAHRLNATTVGDLLTLGSKEIISLPGTGAKTRQELQSRIRQWRR 948 Query: 313 SLGMRLENWPPASIADE 329 SL P A+ A + Sbjct: 949 SLAAAPAGTPSAATAAQ 965 >UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F696_ACIC5 Length = 548 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Query: 217 IRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPI-LLRPVDDL-ELTVRSANCLKAEA 274 +R AA +L +++ + + ++ EV+++ F ++++ EL L A Sbjct: 328 VRLAAKLLGWKID--IKSEEEKRQEVEQQMGGFAQGGTATAIEEVKELGESIIQKLVAAG 385 Query: 275 IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 I + L T +L + P +G+K+L +I + Sbjct: 386 ITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRHY 421 >UniRef50_D0LS71 Serine/threonine protein kinase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LS71_HALO1 Length = 1413 Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 253 LLRPVDDLE--LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 RP+D+L L ++ L + +G+L L P LG K EI L Sbjct: 866 DERPIDELGAALKPKARQGLARMGVGSVGELAMLDRTTLRSVPGLGPKQSDEIVRALERL 925 >UniRef50_A5EC86 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EC86_BRASB Length = 88 Score = 42.1 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 P + P+ ++EL +R L A + IG++ + + E+L+ +LG SL + Sbjct: 1 MIDPSPELPDDTPILNVELPLRVREALVAAGLTTIGEIRETPDKEILRIQHLGTSSLALL 60 Query: 304 KDVLASRGL--SLGMRLENWPPASIADE 329 + L GL S+G+R + P + A++ Sbjct: 61 RKTL---GLPSSVGVRGDAVPMPTKAED 85 >UniRef50_B0SFJ1 Putative uncharacterized protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFJ1_LEPBA Length = 67 Score = 41.7 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 I + DL + ++ +LL+ G SL +++ L G+ L Sbjct: 25 GITKLEDLSRYSKQDLLRLHGFGPSSLPKLESELRKLGIQL 65 >UniRef50_UPI00006A0F8E UPI00006A0F8E related cluster n=3 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A0F8E Length = 835 Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 40/208 (19%) Query: 58 EVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH 117 E++ ++HE+ K+ LNL V + ++ + T +AD+ Sbjct: 50 AFEVEIIIHEFPQKK----------LNLASAKVTLNSDNKFLGTATVKIP----SADVPK 95 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVD-AC 176 D Q+V L ++ + + GY+ L D Sbjct: 96 DKQ----NKQYVYVSLKSNVCALEKVVMLSYHSGYI----------------FLQTDKTI 135 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMET-NGTIDPEEAIRRAAT----ILAEQLEAF 231 Y+P + Y + + + + L+IE T +G I ++I + + L+ +L Sbjct: 136 YTPGSTVLYRIYSMNYKMQPISKTLIIEFVTPDGVIVKRDSILQDSKSGIISLSHKLPEL 195 Query: 232 VDLRDVRQPEVKEEKPEFDPILLRPVDD 259 + L E+ P+ + V + Sbjct: 196 LSLGVWTISAKYEDTPQQNYTTNFEVKE 223 >UniRef50_A5ZLL3 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZLL3_9BACE Length = 220 Score = 40.6 bits (94), Expect = 0.075, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 10/101 (9%) Query: 216 AIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAI 275 A+ ++ Q + FV L++ P +K L P++ LE+ R L+ I Sbjct: 111 AVLHRNNVVCGQFKVFVPLKEYDIPAECVDK------LSTPLEYLEIQPRILRNLRRYNI 164 Query: 276 HYIGDLVQRTEVE----LLKTPNLGKKSLTEIKDVLASRGL 312 + + DL++ + L K +GK+S ++ +L + + Sbjct: 165 YLLEDLLRFIKKNGFDALGKLHGVGKRSCEDLYLILKDKDI 205 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 ... 377 e-103 UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 ... 373 e-102 UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 T... 361 2e-98 UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 ... 358 1e-97 UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390... 357 4e-97 UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 T... 354 3e-96 UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 T... 353 7e-96 UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 ... 352 9e-96 UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 T... 348 1e-94 UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 T... 348 2e-94 UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 T... 347 3e-94 UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Ta... 344 3e-93 UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 T... 344 3e-93 UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 T... 342 1e-92 UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 T... 340 4e-92 UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 339 9e-92 UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 T... 338 2e-91 UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdema... 337 4e-91 UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 T... 336 4e-91 UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Ta... 336 7e-91 UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Ta... 335 2e-90 UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Ta... 335 2e-90 UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Ta... 335 2e-90 UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 ... 334 3e-90 UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 T... 333 4e-90 UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 T... 333 4e-90 UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 T... 332 1e-89 UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subuni... 331 2e-89 UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Ta... 330 3e-89 UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 T... 330 4e-89 UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Ta... 329 9e-89 UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 ... 325 1e-87 UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Ta... 325 1e-87 UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 ... 324 2e-87 UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 T... 321 3e-86 UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 T... 320 4e-86 UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Ta... 320 5e-86 UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 T... 316 8e-85 UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 ... 314 2e-84 UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Ta... 313 7e-84 UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 313 7e-84 UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 T... 311 2e-83 UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 T... 310 4e-83 UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Ta... 310 5e-83 UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Ta... 309 1e-82 UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 T... 308 2e-82 UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 T... 308 2e-82 UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Ta... 307 4e-82 UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=... 306 6e-82 UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas... 306 9e-82 UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chlor... 303 5e-81 UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Ta... 303 5e-81 UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain... 302 1e-80 UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 301 3e-80 UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 T... 300 3e-80 UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Ta... 299 8e-80 UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Ta... 299 1e-79 UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP al... 298 2e-79 UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Ta... 298 2e-79 UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacte... 294 2e-78 UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 T... 294 2e-78 UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Ta... 293 6e-78 UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Ta... 293 7e-78 UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimo... 290 4e-77 UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 T... 287 4e-76 UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 T... 286 7e-76 UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 T... 286 9e-76 UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Ta... 285 1e-75 UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Ta... 284 2e-75 UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha... 284 3e-75 UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Ta... 283 9e-75 UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Ta... 282 1e-74 UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 ... 282 1e-74 UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 281 2e-74 UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=... 281 2e-74 UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis... 281 2e-74 UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 280 5e-74 UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Ta... 279 6e-74 UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=... 275 1e-72 UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 T... 269 9e-71 UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=... 269 1e-70 UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 269 1e-70 UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Ta... 264 3e-69 UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 264 3e-69 UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 T... 264 4e-69 UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 ... 262 1e-68 UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Ta... 262 2e-68 UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Ta... 261 2e-68 UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas Re... 260 4e-68 UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Ta... 258 2e-67 UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 T... 257 5e-67 UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 T... 256 6e-67 UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 T... 256 1e-66 UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax... 255 2e-66 UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Ta... 255 2e-66 UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Ta... 254 2e-66 UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33... 254 5e-66 UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 251 2e-65 UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycopla... 249 7e-65 UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Ta... 249 1e-64 UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Ta... 245 1e-63 UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 T... 244 3e-63 UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimo... 243 8e-63 UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20... 242 1e-62 UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalp... 241 3e-62 UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta... 240 5e-62 UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragm... 237 4e-61 UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Ta... 236 1e-60 UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=... 232 2e-59 UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 230 5e-59 UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Ta... 227 4e-58 UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomo... 223 6e-57 UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Frag... 217 6e-55 UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Ta... 213 5e-54 UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermob... 212 1e-53 UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Ta... 208 2e-52 UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=F... 208 2e-52 UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlo... 200 6e-50 UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Ta... 197 5e-49 UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hy... 187 6e-46 UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Ta... 186 7e-46 UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Ta... 186 8e-46 UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 T... 184 4e-45 UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella ... 184 5e-45 UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragmen... 182 2e-44 UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogoni... 182 2e-44 UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,trunc... 179 1e-43 UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa fi... 179 2e-43 UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Ta... 179 2e-43 UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Ta... 177 5e-43 UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria lit... 177 7e-43 UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 176 8e-43 UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putativ... 172 1e-41 UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative... 170 4e-41 UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragm... 168 2e-40 UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomon... 167 4e-40 UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox cart... 165 2e-39 UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, puta... 164 3e-39 UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Ta... 163 9e-39 UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 T... 162 1e-38 UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Ta... 162 2e-38 UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Ta... 158 2e-37 UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Ta... 155 1e-36 UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha... 155 2e-36 UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosir... 155 2e-36 UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Ta... 154 3e-36 UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=... 153 6e-36 UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia... 153 8e-36 UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitoc... 152 1e-35 UniRef50_Q4N9I8 DNA-directed RNA polymerase, alpha subunit, puta... 152 2e-35 UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliel... 151 3e-35 UniRef50_B9Q9G8 RNA polymerase Rpb3/Rpb11 dimerisation domain-co... 149 1e-34 UniRef50_B6K900 RNA polymerase Rpb3/Rpb11 dimerization domain-co... 149 1e-34 UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative ... 141 3e-32 UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subu... 129 1e-28 UniRef50_Q06FN2 Putative DNA-directed RNA polymerase subunit alp... 119 1e-25 UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candida... 116 9e-25 UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Ta... 106 2e-21 UniRef50_Q97B93 DNA-directed RNA polymerase subunit D n=3 Tax=Th... 100 1e-19 UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alph... 99 2e-19 UniRef50_Q5JJF4 DNA-directed RNA polymerase subunit D n=2 Tax=Th... 97 8e-19 UniRef50_Q8SL86 DNA-directed RNA polymerase subunit alpha n=1 Ta... 96 2e-18 UniRef50_Q8SL88 DNA-directed RNA polymerase subunit alpha n=1 Ta... 95 2e-18 UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain... 95 4e-18 UniRef50_Q2EEW7 DNA-directed RNA polymerase subunit alpha n=1 Ta... 95 4e-18 UniRef50_Q8U0E4 DNA-directed RNA polymerase subunit D n=7 Tax=Th... 89 2e-16 UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD... 88 3e-16 UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 ... 88 3e-16 UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Ta... 88 5e-16 UniRef50_P48337 DNA-directed RNA polymerase subunit alpha n=2 Ta... 85 3e-15 UniRef50_Q8SL92 DNA-directed RNA polymerase subunit alpha n=1 Ta... 84 7e-15 UniRef50_Q8SL90 DNA-directed RNA polymerase subunit alpha n=1 Ta... 84 7e-15 UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomast... 84 7e-15 UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putativ... 81 5e-14 UniRef50_B5ID28 RNA polymerase n=3 Tax=Euryarchaeota RepID=B5ID2... 80 9e-14 UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiropl... 78 5e-13 UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain... 75 4e-12 UniRef50_A6C7Z0 Serine/threonine protein kinase n=2 Tax=Planctom... 74 8e-12 UniRef50_P34778 DNA-directed RNA polymerase subunit alpha n=1 Ta... 72 3e-11 UniRef50_Q57648 DNA-directed RNA polymerase subunit D n=12 Tax=M... 72 3e-11 UniRef50_A7M3S5 Putative uncharacterized protein n=7 Tax=Bactero... 72 4e-11 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 70 1e-10 UniRef50_Q6VAG4 Putative uncharacterized protein n=6 Tax=Bactero... 67 1e-09 UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 ... 66 1e-09 UniRef50_C0JWW4 Alpha subunit of RNA polymerase n=1 Tax=Pycnococ... 66 2e-09 UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1... 66 2e-09 UniRef50_UPI000197AD37 hypothetical protein BACCOPRO_01772 n=1 T... 64 8e-09 UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella ... 64 8e-09 UniRef50_D1H4E8 Whole genome shotgun sequence of line PN40024, s... 63 1e-08 UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 ... 63 2e-08 UniRef50_A3ZPK6 DNA-directed RNA polymerase, alpha subunit n=1 T... 63 2e-08 UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax... 62 4e-08 UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 60 8e-08 UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovo... 60 9e-08 UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobactera... 59 2e-07 UniRef50_UPI000197BA40 hypothetical protein BACCOPRO_01755 n=1 T... 59 2e-07 UniRef50_C5SIY2 Putative uncharacterized protein n=1 Tax=Asticca... 58 3e-07 UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Plancto... 58 3e-07 UniRef50_UPI000197BA3F hypothetical protein BACCOPRO_01754 n=1 T... 57 9e-07 UniRef50_A9F5X1 Protein kinase n=1 Tax=Sorangium cellulosum 'So ... 57 9e-07 UniRef50_B1INQ5 Dna-directed rna polymerase alpha chain (Rnap al... 57 1e-06 UniRef50_Q2SGK7 Serine/threonine protein kinase n=2 Tax=Gammapro... 57 1e-06 UniRef50_C1EL51 Conserved domain protein n=81 Tax=Bacteria RepID... 57 1e-06 UniRef50_B2J0X0 RNA polymerase, alpha subunit domain protein n=1... 56 2e-06 UniRef50_D1C976 Helix-hairpin-helix motif protein n=7 Tax=Bacter... 55 5e-06 UniRef50_C6J496 Putative uncharacterized protein n=1 Tax=Paeniba... 54 8e-06 UniRef50_A8SD09 Putative uncharacterized protein n=1 Tax=Faecali... 53 1e-05 UniRef50_A8H4Z2 RNA polymerase sigma factor n=1 Tax=Shewanella p... 52 2e-05 UniRef50_Q01V32 RNA polymerase, alpha subunit domain protein n=1... 52 3e-05 UniRef50_UPI00016C679A hypothetical protein CdifQCD-7_20312 n=1 ... 52 4e-05 UniRef50_D0TJA1 Predicted protein n=1 Tax=Bacteroides sp. 2_1_33... 50 9e-05 UniRef50_D2S452 Putative uncharacterized protein n=1 Tax=Geoderm... 50 2e-04 Sequences not found previously or not previously below threshold: UniRef50_A3CWH9 DNA-directed RNA polymerase, subunit D n=5 Tax=M... 67 8e-10 UniRef50_B1L798 DNA-directed RNA polymerase subunit D n=1 Tax=Ca... 61 5e-08 UniRef50_D1Z0V8 DNA-directed RNA polymerase subunit D n=1 Tax=Me... 60 8e-08 UniRef50_Q2NFZ6 DNA-directed RNA polymerase subunit D n=2 Tax=Me... 58 4e-07 UniRef50_Q8PV16 DNA-directed RNA polymerase subunit D n=4 Tax=Eu... 57 7e-07 UniRef50_A5UN55 DNA-directed RNA polymerase subunit D n=2 Tax=Me... 57 8e-07 UniRef50_B0R4Y2 DNA-directed RNA polymerase subunit D n=11 Tax=H... 57 1e-06 UniRef50_B6AC64 DNA-directed RNA polymerases I and III subunit R... 56 2e-06 UniRef50_Q8TVB8 DNA-directed RNA polymerase subunit D n=1 Tax=Me... 54 7e-06 UniRef50_C7DIN8 RNA polymerase insert n=1 Tax=Candidatus Micrarc... 53 1e-05 UniRef50_A3MXZ5 DNA-directed RNA polymerase subunit D n=2 Tax=Th... 53 2e-05 UniRef50_D1VQ00 Putative uncharacterized protein n=1 Tax=Frankia... 53 2e-05 UniRef50_B6KLD3 DNA-directed RNA polymerases I and III subunit R... 52 2e-05 UniRef50_A2BK79 DNA-directed RNA polymerase subunit D n=1 Tax=Hy... 52 2e-05 UniRef50_C4R7L2 RNA polymerase II third largest subunit B44, par... 50 8e-05 UniRef50_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 ... 50 8e-05 UniRef50_O28002 DNA-directed RNA polymerase subunit D n=3 Tax=Ar... 50 1e-04 UniRef50_D1J901 Putative DNA-directed RNA polymerase, subunit D ... 50 1e-04 UniRef50_A0B9L4 DNA-directed RNA polymerase, subunit D n=1 Tax=M... 49 2e-04 UniRef50_Q8SL94 DNA-directed RNA polymerase subunit alpha n=1 Ta... 49 2e-04 UniRef50_P37382 DNA-directed RNA polymerase II subunit RPB3 n=5 ... 49 2e-04 UniRef50_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CB... 49 2e-04 UniRef50_Q5CPY6 RNA polymerase III C5 subunit n=2 Tax=Cryptospor... 48 3e-04 UniRef50_A0JVH2 Putative uncharacterized protein n=2 Tax=Arthrob... 48 5e-04 UniRef50_C7RJ33 Serine/threonine protein kinase n=1 Tax=Candidat... 48 6e-04 UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Ac... 47 8e-04 UniRef50_B0SFJ1 Putative uncharacterized protein n=2 Tax=Leptosp... 47 9e-04 UniRef50_C6Z4I8 Putative uncharacterized protein n=3 Tax=Bactero... 46 0.001 UniRef50_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain co... 46 0.002 UniRef50_Q9YB53 DNA-directed RNA polymerase subunit D n=1 Tax=Ae... 46 0.002 UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospi... 45 0.003 UniRef50_D1R556 Putative uncharacterized protein n=1 Tax=Parachl... 45 0.003 UniRef50_A3DMQ6 DNA-directed RNA polymerase, subunit D n=2 Tax=D... 45 0.003 UniRef50_D1SHQ1 Putative uncharacterized protein n=1 Tax=Micromo... 45 0.004 UniRef50_Q49ZY1 Putative uncharacterized protein n=1 Tax=Staphyl... 45 0.004 UniRef50_D1VE21 Serine/threonine protein kinase n=1 Tax=Frankia ... 45 0.004 UniRef50_A5EC86 Putative uncharacterized protein n=1 Tax=Bradyrh... 45 0.005 UniRef50_D1C4N8 Putative uncharacterized protein n=1 Tax=Sphaero... 44 0.007 >UniRef50_A1TYM2 DNA-directed RNA polymerase subunit alpha n=639 Tax=Bacteria RepID=RPOA_MARAV Length = 334 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 239/329 (72%), Positives = 277/329 (84%), Gaps = 1/329 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQ SV E L PR +D+++ S+T AKVTLEPLERGFGHTLG+ALRRILLSSMPGCAVTE + Sbjct: 1 MQRSVHELLTPRTIDVKESSATRAKVTLEPLERGFGHTLGSALRRILLSSMPGCAVTEAQ 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS EGVQED++EILLNLKG+AV++ G+D+ LTL+K G G VTA DI D D Sbjct: 61 IDGVLHEYSAIEGVQEDVIEILLNLKGVAVKMNGRDDAELTLSKKGPGVVTAGDIKLDHD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEI P+HVICHL+ EN ++MR++V RGRGY PA R E++ R IGRL +DA +SPV Sbjct: 121 VEIANPEHVICHLS-ENGEVNMRLRVARGRGYEPADQRGLDEDETRAIGRLQLDATFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 R+AY VE+ARVEQRTDLDKLVI++ETNGTIDPEEAIRRAATIL +QL FVD ++P Sbjct: 180 RRVAYAVESARVEQRTDLDKLVIDLETNGTIDPEEAIRRAATILQQQLAVFVDFDHEKEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E EE+ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKSL Sbjct: 240 ERVEEEEEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 TEIKDVLASRGLSLGMRL+NWPPAS+ + Sbjct: 300 TEIKDVLASRGLSLGMRLDNWPPASLRGD 328 >UniRef50_A4YBV8 DNA-directed RNA polymerase subunit alpha n=117 Tax=cellular organisms RepID=RPOA_SHEPC Length = 329 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 290/329 (88%), Positives = 310/329 (94%), Gaps = 1/329 (0%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQV+ST AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQVNSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 IDGVLHEYS+KEGVQEDILEILLNLKGLAV ++GKDE +LTL+KSG GPV AADITHDGD Sbjct: 61 IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGAGPVIAADITHDGD 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 V IV P HVICHLT N ISMRI+V+RGRGYVPAS R +E+D+RPIGRLLVDA +SPV Sbjct: 121 VTIVNPDHVICHLTGNN-DISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPV 179 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 RIAYNVEAARVEQRTDLDKLVI+M TNGTIDPEEAIRR+ATILAEQL+AFV+LRDV +P Sbjct: 180 ARIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEP 239 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E+KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL Sbjct: 240 ELKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 299 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 TEIKDVLASRGLSLGMRLENWPPAS+AD+ Sbjct: 300 TEIKDVLASRGLSLGMRLENWPPASLADD 328 >UniRef50_Q1IS93 DNA-directed RNA polymerase subunit alpha n=28 Tax=Bacteria RepID=RPOA_ACIBL Length = 368 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 132/318 (41%), Positives = 198/318 (62%), Gaps = 8/318 (2%) Query: 8 FLKPRL--VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 F KP+ D E ++ + +P ERGFG T+GNALRR+LLSS+ G A+T V+I+GVL Sbjct: 6 FQKPKRLAFDSESLTDKYGHFWAQPFERGFGTTIGNALRRVLLSSIEGAAITAVKIEGVL 65 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE+ + GV ED +I+LNLK + R+ G + L G VT+ I D DVEI+ Sbjct: 66 HEFQSIPGVVEDATDIILNLKQIPFRLNGDAPKAIYLRAEQPGIVTSGMIETDADVEILD 125 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I ++ E + M +++++GRGYV A +++ +G + +D+ +SPV + Y Sbjct: 126 KDVYIATIS-EGGKLDMEMRLKKGRGYVSADKNF---DEDLGLGFIPIDSVHSPVRKCNY 181 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ--PEVK 243 +VEAAR+ Q TD DKL IE+ TNG+++P +A+ AA +L + + F++ + + Sbjct: 182 SVEAARLGQITDYDKLSIELWTNGSVNPADALGLAAKLLKDHMNIFINFEEEIEASHAED 241 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + L R V++LEL+VRS NCLK I IG+LVQ+TE E+LKT N G+KSL EI Sbjct: 242 RKPEIRNENLNRSVEELELSVRSYNCLKNANIQTIGELVQKTEAEMLKTKNFGRKSLNEI 301 Query: 304 KDVLASRGLSLGMRLENW 321 K++LAS GLSLGM+++ Sbjct: 302 KEILASMGLSLGMKIDEH 319 >UniRef50_B9MKF3 DNA-directed RNA polymerase subunit alpha n=617 Tax=Bacteria RepID=RPOA_ANATD Length = 324 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 147/329 (44%), Positives = 207/329 (62%), Gaps = 10/329 (3%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + EF KP + + + + + +EPLERG+G T+GNALRR LLSS+PG AVT V+IDG Sbjct: 1 MIEFQKPTIRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV ED+ EI+LNLKGLA+++ ++ + G V A DI D D+EI Sbjct: 61 VLHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKVMYIEAQGECEVKAKDIKADADIEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 P H I L +++A + M I V +G+GYV A +++ +PIG + VD+ Y+PV ++ Sbjct: 121 CNPDHHIATL-NQDARLFMEITVNQGKGYVLAE---RNKQPNQPIGVIPVDSIYTPVVKV 176 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR---QP 240 Y VE RV Q TD DKL +E+ TNGTI P+EA+ AA IL E F DL ++ + Sbjct: 177 NYKVENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFNLFTDLSNIPTKIET 236 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 VK+E P+ + +L +++LEL+VRS NCLK I+ + DLV +TE E++K NLGKKSL Sbjct: 237 VVKQEPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSL 296 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 E+ L S GLSL + + P +E Sbjct: 297 EEVIQKLHSLGLSL--KKSDSTPKEEEEE 323 >UniRef50_C9R8G2 DNA-directed RNA polymerase, alpha subunit n=390 Tax=Bacteria RepID=C9R8G2_AMMDK Length = 319 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 148/321 (46%), Positives = 204/321 (63%), Gaps = 10/321 (3%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + KPR+ VD + + + +EPL RG+G TLGNALRR+LLSS+PG AVT V+I+G Sbjct: 1 MLGIEKPRVSVDSLAPTGDYGRFVIEPLVRGYGITLGNALRRVLLSSIPGAAVTMVKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV+ED++EI+LNL+GL +R+ +E IL + +G V A DI D DVEI Sbjct: 61 VLHEFSTLPGVREDVVEIILNLRGLKIRMHTDEERILRIEAAGEREVRARDIIADADVEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P H I L E + M + V+RGRGYVPA + H + IG + VDA +SPV+++ Sbjct: 121 LNPDHYIASLAPEG-RLFMEMTVRRGRGYVPADRQRH----DHVIGAIPVDADFSPVKKV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD----VRQ 239 Y VE A V Q D D+L++E+ TNG + PEEA+ AA IL E + L + + Sbjct: 176 NYRVENAWVGQNADYDRLILEVWTNGCVRPEEAVSLAARILCEHFQLLTGLSTSTGHLEK 235 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 V++E+ + +L P+++L+L+VRS NCLK I+ I DL QRTE E++K NLGKKS Sbjct: 236 IMVEKEEDNKNRLLEMPIEELDLSVRSYNCLKRAGINTILDLTQRTEEEMMKVRNLGKKS 295 Query: 300 LTEIKDVLASRGLSLGMRLEN 320 L E+K LA GLSL E Sbjct: 296 LEEVKQKLAELGLSLKPSSEE 316 >UniRef50_Q2JL74 DNA-directed RNA polymerase subunit alpha n=39 Tax=cellular organisms RepID=RPOA_SYNJB Length = 335 Score = 354 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 172/305 (56%), Gaps = 7/305 (2%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 + + K L PLERG G T+GNALRR+LLS++ G AVT V I GV HE+ST Sbjct: 28 CVESHRDDNGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGVTHEFST 87 Query: 71 KEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 GV+ED++EILLN+K L +R + + L G G VTA + DVE++ P+H I Sbjct: 88 VPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHI 147 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 L E A + M + RG GY +S+ I L +D+ + PV ++ Y VEAA Sbjct: 148 ATLA-EGAILEMEFMIGRGHGYRAVD---YSDSKAMAIDFLQIDSVFMPVRKVNYAVEAA 203 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD 250 RV Q + D+LV+E+ TNG++ P+EA+ +AA IL ++ V + E + Sbjct: 204 RVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLFAPLQEVS--FDAPVPPKPDEDN 261 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS- 309 P+++L+L+VR+ NCLK I+ + DL+ TE +LL+ N G+KS E+ L + Sbjct: 262 QKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKAR 321 Query: 310 RGLSL 314 GL+L Sbjct: 322 FGLTL 326 >UniRef50_Q16AB8 DNA-directed RNA polymerase subunit alpha n=35 Tax=Proteobacteria RepID=RPOA_ROSDO Length = 338 Score = 353 bits (905), Expect = 7e-96, Method: Composition-based stats. Identities = 156/326 (47%), Positives = 231/326 (70%), Gaps = 8/326 (2%) Query: 7 EFLKPRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 E +KP+ +D++ + A VT EPLERGFG T+GNALRR+L+SS+ G A+T V+ID V Sbjct: 8 ELIKPQQLDVKPGNDPARQATVTAEPLERGFGLTMGNALRRVLMSSLQGAAITSVQIDNV 67 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHE+S+ GV+ED+ +I+LNLKG+++R++ + L+++ G G VTA DI+ +EI+ Sbjct: 68 LHEFSSVAGVREDVTDIILNLKGVSIRMEVEGPKRLSISAKGPGVVTAGDISESAGIEIL 127 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 HVICHL D+ A + M + V +G+GYV A ++ ++ PIG + +DA YSPV++++ Sbjct: 128 NRDHVICHL-DDGADVYMELTVNQGKGYVSAE---KNKPEDAPIGLIPIDAIYSPVKKVS 183 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y+V+ R Q D DKL +++ET+G++ P++A+ AA IL +QL FV+ + + Sbjct: 184 YDVQPTREGQVLDYDKLTMKVETDGSLTPDDAVAFAARILQDQLGIFVNFEEPESASRAD 243 Query: 245 EKP--EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 E EF+P+LL+ VDDLEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+KSL E Sbjct: 244 EDDGLEFNPLLLKKVDDLELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNE 303 Query: 303 IKDVLASRGLSLGMRLENWPPASIAD 328 IK+VL+ GL LGM +E+WPP +I D Sbjct: 304 IKEVLSGMGLHLGMDVEDWPPDNIED 329 >UniRef50_A4FPJ2 DNA-directed RNA polymerase subunit alpha n=185 Tax=Bacteria RepID=RPOA_SACEN Length = 359 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 136/316 (43%), Positives = 192/316 (60%), Gaps = 7/316 (2%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 E V+ T ++ +EPLE GFG+TLGN+LRR LLSS+PG AVT + IDGVLHE++T GV+E Sbjct: 12 EAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVLHEFTTIPGVKE 71 Query: 77 DILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDE 136 D+ +++LNLK L V + + V + L K G G VTAADI V + P I L + Sbjct: 72 DVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHNPDLHIATLNGK 131 Query: 137 NASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRT 196 + + + V+RGRGYVPA + +++ IGR+ VD+ YSPV ++ Y VEA RVEQRT Sbjct: 132 G-KLEIELVVERGRGYVPA---VQNKQTGAEIGRIPVDSIYSPVLKVTYKVEATRVEQRT 187 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR---DVRQPEVKEEKPEFDPIL 253 D DKL++++ET +I P +A+ A L E +L + + + + Sbjct: 188 DFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPAEADTIAAY 247 Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 P++DL+LTVRS NCLK E IH +G+LV R+E +LL N G KS+ E+K L GLS Sbjct: 248 AMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLKLVGLGLS 307 Query: 314 LGMRLENWPPASIADE 329 L + P++ A E Sbjct: 308 LKDSPPGFDPSAAAAE 323 >UniRef50_Q2S3N9 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_SALRD Length = 328 Score = 348 bits (893), Expect = 1e-94, Method: Composition-based stats. Identities = 134/327 (40%), Positives = 205/327 (62%), Gaps = 10/327 (3%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 P V +E+VS + + + PLERG+G T+GNALRR+LLSS+ G A+T V+IDGV HE Sbjct: 6 LQMPEGVHVEEVSDSEGQFVMGPLERGYGVTIGNALRRVLLSSLRGLAITAVKIDGVQHE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADI-THDGDVEIVKP 126 +ST GV ED+ +++LNLK + + E L LN G G TAADI + +++ P Sbjct: 66 FSTIPGVTEDVADLILNLKEVRFKADEMQEGHLHLNLEGPGNWTAADIDEATAEYDVLNP 125 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 + L E+A +++ ++V GRGYVP+ ++ ++ PIG + +D+ ++P++ + Y Sbjct: 126 DQHVATLA-EDAVVNVDLRVGYGRGYVPSE---ENKREDDPIGVIAIDSIFTPIKNVNYE 181 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-----RDVRQPE 241 V+ RV Q+ D ++L++++ET+G++ PEEAI + A+IL + + F+ L V + E Sbjct: 182 VKPTRVGQKIDYEELLLDVETDGSLTPEEAITQGASILRDHVSFFIQLEEEPEPVVEEQE 241 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 V EE +L +PVD+L+L+VRS NCLKA I IGDLV+R E E+LK N G+KSL Sbjct: 242 VDEEVKRIRELLAQPVDELDLSVRSHNCLKAANIKTIGDLVRREEDEMLKFRNFGRKSLQ 301 Query: 302 EIKDVLASRGLSLGMRLENWPPASIAD 328 E+ +VL RGL GM +E + A Sbjct: 302 ELVEVLDERGLQFGMDVEEYLEEKKAS 328 >UniRef50_D1CFF3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFF3_THET1 Length = 367 Score = 348 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 10/329 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 SV E P+ V+ ++ + + ++ PL G+G T+GNALRR+LLSS+ G A+T V+I+G Sbjct: 21 SVIELTTPK-VECIGIADNYGRFSISPLAPGYGLTIGNALRRVLLSSLEGAAITSVQIEG 79 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE+ GV+ED+ +I+LN+K + VR V L L +G VTAADI DV+I Sbjct: 80 ARHEFMALPGVKEDVTDIILNIKRIRVRSYSDRPVTLRLEATGPKVVTAADIRPHADVDI 139 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V I L E+A++SM++ VQ+GRGYVPA ++ D IGR+ VDA YSPV ++ Sbjct: 140 VSLDQPIATLDSEDATLSMQLTVQKGRGYVPAESQ-----DFFEIGRIPVDAIYSPVTKV 194 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---P 240 Y VE RV QRTD D L+IE+ T+GTI P EA+ +AA+IL Q + + Sbjct: 195 NYVVERTRVGQRTDYDNLIIEIWTDGTIAPGEALSQAASILVGQFQIIAAYANAETSFGI 254 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E+ E + R +D+L L+ R+ N LK I +G ++ +T+ +LL N G KSL Sbjct: 255 ELPTETMSVPEVDNRSIDELGLSARTLNSLKRAHITTVGQVLSKTKDDLLSIRNFGDKSL 314 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIADE 329 E++ L G L L + D+ Sbjct: 315 HELEAKLKEFGY-LPSDLPEGAIENAPDD 342 >UniRef50_B8G1Z4 DNA-directed RNA polymerase subunit alpha n=17 Tax=Firmicutes RepID=RPOA_DESHD Length = 315 Score = 347 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 135/314 (42%), Positives = 200/314 (63%), Gaps = 8/314 (2%) Query: 5 VTEFLKPRLVDIEQVSST-HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + E KP++ +E+ +AK +EPLERG+G TLGN+LRRILLSS+PG AVT V+I+G Sbjct: 1 MLEIEKPKIECVERTDDNSYAKFVVEPLERGYGITLGNSLRRILLSSLPGTAVTSVKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 VLHE+ST GV ED+ +I+LNLK LA++ + +L L G G + A DI D D+EI Sbjct: 61 VLHEFSTVPGVLEDVTDIILNLKSLALKGHTDEPKVLRLEAEGEGVIKAGDIITDADIEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P I L D++ + M + +RGRGYV A +++ ++ IG + +D+ ++P+ ++ Sbjct: 121 LNPDLKIATL-DKDGRLFMEMTAERGRGYVSAD---KNKKPDQAIGIIPIDSIFAPIYKV 176 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV---RQP 240 Y VE RV TD DKL +E+ +NG+I PEEA AA IL+E L F+ L D + Sbjct: 177 NYTVEDTRVGMVTDYDKLTLEVWSNGSITPEEATSLAAKILSEHLRLFIGLTDKLNNVEI 236 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 V++E+ D IL ++DL+L+VRS NCLK I+ + +L Q+TE +++K NLG+KSL Sbjct: 237 MVEKEEEAKDKILEMTIEDLDLSVRSYNCLKRAGINSVEELTQKTEEDMIKVRNLGRKSL 296 Query: 301 TEIKDVLASRGLSL 314 E++ L GL Sbjct: 297 EEVESKLKELGLGF 310 >UniRef50_A9B437 DNA-directed RNA polymerase subunit alpha n=7 Tax=Chloroflexi RepID=RPOA_HERA2 Length = 331 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 10/312 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + + P+L + + + + +EPL+ G+GHTLGNALRR+LLSS+PG AV +++IDG+ Sbjct: 1 MLDIAMPKLECV-AAAENYGRFKIEPLDPGYGHTLGNALRRVLLSSIPGAAVIKIKIDGI 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+S +GV+ED EI+LN+KG+ +R + V + L+K+G G V A+DI +VEIV Sbjct: 60 FHEFSPIQGVREDATEIVLNVKGIRLRSYAERPVKMILSKTGPGVVRASDIECPSNVEIV 119 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P H I L +A + M + V+R RGY+PA D PIG + VDA ++PV ++ Sbjct: 120 NPDHYIATLDSSDARLDMELTVERHRGYLPAEN-----RDPVPIGEIPVDAIFTPVHKVN 174 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y VE R+ TD D+L++E+ T+GT+ P +A+ AA +L + D + + Sbjct: 175 YVVEHTRIGGMTDFDRLLLEIWTDGTVKPGDALSYAAQVLVQYSSIIADFNRFDDEQEQV 234 Query: 245 EKPE----FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 I P++DL+L+ R+ NCLK I +G +++ E +LL NLG+KS+ Sbjct: 235 GDANGLVIPSEIYDMPIEDLDLSTRTYNCLKRADITKVGQVLEMDEKQLLAVRNLGQKSM 294 Query: 301 TEIKDVLASRGL 312 EI++ L R L Sbjct: 295 DEIREKLIERNL 306 >UniRef50_B5EM99 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Acidithiobacillus RepID=B5EM99_ACIF5 Length = 339 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 177/325 (54%), Positives = 235/325 (72%), Gaps = 5/325 (1%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 V E L+P+ VD+E +S+ A++ L PLERGFGHTLG+ LRR+LLSS+ G AVTEVEI+GV Sbjct: 4 VGELLRPQGVDVEVISARRARLALGPLERGFGHTLGSGLRRVLLSSLKGAAVTEVEIEGV 63 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 LHEYS+ EGVQED+++ILLNLK LAVR G+ + ++TL K G G +T ADI + +E+ Sbjct: 64 LHEYSSIEGVQEDVVDILLNLKMLAVRAHGRGDAVVTLRKRGPGQMTGADIVSEHGIEVA 123 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ VI LT + + +R+++ GRGY A+TR S E IG + +DA +SPV R++ Sbjct: 124 NPEQVIATLT-RDVELVLRLRIDEGRGYDAAATRRQSHEKR--IGVMALDASFSPVLRVS 180 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y VE ARVEQRTDLD+L++++ETNG +DP A++ AA I QL PE + Sbjct: 181 YLVENARVEQRTDLDRLILDVETNGVVDPVWAVQEAARIFRSQLGVLAGAETREIPEASQ 240 Query: 245 EK--PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + P+L+RPVDDLELTVRSANCLKAE I YIGDLVQ++E ELLK PNLG+KSL E Sbjct: 241 VQVSQSLTPLLIRPVDDLELTVRSANCLKAEDIFYIGDLVQKSEQELLKAPNLGRKSLNE 300 Query: 303 IKDVLASRGLSLGMRLENWPPASIA 327 IK+VL + GL+LGMRL++WPP ++ Sbjct: 301 IKEVLVAHGLTLGMRLDSWPPENLP 325 >UniRef50_Q30Z68 DNA-directed RNA polymerase subunit alpha n=21 Tax=Bacteria RepID=RPOA_DESDG Length = 348 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 200/322 (62%), Gaps = 9/322 (2%) Query: 6 TEFLKPRLVD--IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +E +KP + E + + K EPLERG+G T+GNA+RR+LL+S+ G A V+I G Sbjct: 16 SELVKPDQISRASESADTMYGKFVCEPLERGYGTTIGNAMRRVLLASLQGAAFVAVKISG 75 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE++T GV ED+ +I+LNLK + + + ++ L L+ + G V A DI + V + Sbjct: 76 VQHEFTTIPGVLEDVTDIVLNLKQVRLAMDTEEPQHLELHVNKSGEVKAGDIKCNQHVMV 135 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + + LT E+ ++ ++V+ G+GYVPA ++ IG + +DA +SPV ++ Sbjct: 136 LNADQHLMTLT-EDVELTFELEVRMGKGYVPADMHEGLSDE---IGLIALDASFSPVRKV 191 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD---VRQP 240 AY VE ARV Q T+ DKL++E+ T+G+I PE+AI +A I+ +Q+ F++ + ++ Sbjct: 192 AYTVEQARVGQMTNYDKLILEVWTDGSISPEDAIAYSAKIIKDQISVFINFDERISEQEN 251 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 E + + + L + +D+LEL+VR+ NCLK+ I +G+LVQ++E E+LKT N G+KSL Sbjct: 252 EGRSSASDVNENLFKGIDELELSVRATNCLKSANISLVGELVQKSEGEMLKTKNFGRKSL 311 Query: 301 TEIKDVLASRGLSLGMRLENWP 322 EI+ VL L GM+++ + Sbjct: 312 DEIRRVLGEMSLDFGMKVDGFE 333 >UniRef50_D1C2N3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N3_SPHTD Length = 340 Score = 340 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 183/320 (57%), Gaps = 8/320 (2%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + E +PR V + + +EPLE G+G T+GNALRRILL S+PG A+ V I V Sbjct: 1 MLEIARPR-VQQTHAGVNYGRFEIEPLEPGYGITIGNALRRILLRSLPGTAIVRVRIADV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVE 122 HE+ST EGV+ED+ EI+LNLK + ++ + E +L G G V A DI GDVE Sbjct: 60 WHEFSTIEGVREDVTEIVLNLKRVRLKALTESFREGRASLYAQGEGVVRAGDIDWPGDVE 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P+HVI L +++A + M + + RGRGY PA T+ + IG + VDA ++P+E+ Sbjct: 120 VVNPEHVIATLDNDDARLEMDLVIARGRGYQPAETQ-----EIYTIGEIPVDAIFTPIEK 174 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 + Y VE RV Q TD D+L+IE+ T+GTI+P +A+ AA IL + D Sbjct: 175 VNYVVEHTRVGQMTDYDRLIIEIITDGTIEPADALSEAAQILVDHARLIADFNREPSEPE 234 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 +EE + RP+ +L L+ R N L++ I +G ++ + +LL N G +SL E Sbjct: 235 EEEDKTPSIVDNRPLAELGLSPRVLNALRSRQIERVGQVLSLPQEQLLSIRNFGPRSLQE 294 Query: 303 IKDVLASRGLSLGMRLENWP 322 +++ LA G +L M E Sbjct: 295 LRERLAEHGYTLAMDAEKKD 314 >UniRef50_C1SPG1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPG1_9BACT Length = 335 Score = 339 bits (869), Expect = 9e-92, Method: Composition-based stats. Identities = 140/318 (44%), Positives = 213/318 (66%), Gaps = 8/318 (2%) Query: 7 EFLKPRLVD-IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E +KPR ++ + +V+ + + EP E+GFG T+GNALRR+LL+++ G AV V+IDGV Sbjct: 8 EIIKPRKIEAVGEVTDRYGEYVAEPYEKGFGITIGNALRRVLLATIEGTAVVGVKIDGVS 67 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 +E++T EGV ED+++IL+N+K L +++ + + + K+G GPVTA DIT D VEI+ Sbjct: 68 NEFATLEGVYEDVVDILMNIKMLDLKLHTHETRRVYIKKTGEGPVTAGDITGDTMVEILT 127 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P IC +TD N ++M VQRG GYVPA E+D I L VDA ++P++++ Y Sbjct: 128 PDQHICTITDPNKELNMEFVVQRGIGYVPAE---ELEKDYDEIDMLSVDAVFTPIKKVNY 184 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----DVRQPE 241 +V+ ARV Q TD D+L +E+ET+G+I+PE+AI AA I+ +Q+ F++ +V+Q E Sbjct: 185 HVDNARVGQSTDYDRLTLEVETDGSINPEDAIGFAAKIIKDQMNLFINFDEPVVEVKQDE 244 Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + + + +L + +++LEL+VR+ NCLK I + +L +T+ E+LKT N G+KSL Sbjct: 245 EENQNDQLLDLLDKSIEELELSVRAYNCLKNANIKTLAELCMKTDAEMLKTKNFGRKSLE 304 Query: 302 EIKDVLASRGLSLGMRLE 319 EIK VL GLSLGM LE Sbjct: 305 EIKKVLQELGLSLGMDLE 322 >UniRef50_C8W7X1 DNA-directed RNA polymerase, alpha subunit n=5 Tax=Coriobacteriaceae RepID=C8W7X1_ATOPD Length = 313 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 138/316 (43%), Positives = 199/316 (62%), Gaps = 11/316 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 ++EF++P V ++++ + A+V++EPLERG+G TLGN+LRR+LLSS+ G AV ++IDGV Sbjct: 1 MSEFIRPN-VSVDEIGANVARVSVEPLERGYGDTLGNSLRRVLLSSLEGAAVEAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE++T EGV ED+ +I+LN+KGL R DE +++ G VT AD+ E+ Sbjct: 60 QHEFTTVEGVYEDVTDIVLNVKGLVFRNTNNSDEAEASISVDGPCTVTGADLDVPMGYEL 119 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 V P IC L E A +SMR+++ GRGYV +E + PIG + VD+ +SPV R Sbjct: 120 VNPAQHICALA-EGAHLSMRLRIGNGRGYVSGED---NERENDPIGFIHVDSIFSPVRRC 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 A VE RV + TD D+LV+E+ETNG I P EA+ AA I+ + + AF+ L D + + + Sbjct: 176 AKAVEPCRVGRHTDYDRLVLEVETNGAISPREAVVEAANIINQHMSAFMGLTDFDETQEE 235 Query: 244 -----EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 + E D L + V+DL+L+VRS NCLK IH + LV +E +LL N G K Sbjct: 236 ASIFAKADVEDDSELEKQVEDLDLSVRSYNCLKRAGIHSVRQLVDFSENDLLNIRNFGVK 295 Query: 299 SLTEIKDVLASRGLSL 314 S+ E+K+ L S GLSL Sbjct: 296 SIEEVKEKLESMGLSL 311 >UniRef50_B9Y6F5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y6F5_9FIRM Length = 321 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 183/316 (57%), Gaps = 7/316 (2%) Query: 5 VTEFLKPR-LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F + + V S + K +EPLERGFG TLGNALRR+LLSS+PG AV ++++G Sbjct: 3 MQKFERAKFEVKEYVESDHYGKFVVEPLERGFGTTLGNALRRVLLSSLPGAAVYSIKVEG 62 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE+++ GV+ED+ ++LN+K L +++ + L + G VTA DI VE+ Sbjct: 63 VYHEFTSIPGVEEDVTMMILNIKNLIMKIDDDESYTLRIAAKGPMTVTAGDIICPTGVEV 122 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPAS-TRIHSEEDERPIGRLLVDACYSPVER 182 + I HL +E A++ M +K + GRGY+ A + + + IG + D+ Y+P++R Sbjct: 123 LNKDLEIAHL-EEGATLEMELKARNGRGYISADGNKALYQGSSQGIGTVYTDSIYTPIDR 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 I+YNVE RV Q D+L+ E+ TNG+I P+ ++ + IL + L+ + + Sbjct: 182 ISYNVEPTRVGQDAKYDRLIFEIWTNGSITPQMSLALGSKILIDHLDLLTHVNESVADME 241 Query: 243 KEEK----PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 K + ++DL+L+VRS NCLK I + +L QR+E E+++ NLGKK Sbjct: 242 SVMKDVNGESPKNMQSMAIEDLDLSVRSYNCLKRAGIQTVEELTQRSEEEMMRVRNLGKK 301 Query: 299 SLTEIKDVLASRGLSL 314 SL E+KD + GLS Sbjct: 302 SLKEVKDKIYELGLSF 317 >UniRef50_B3DVZ0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DVZ0_METI4 Length = 337 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 135/327 (41%), Positives = 207/327 (63%), Gaps = 12/327 (3%) Query: 1 MQGSVTEFLKPRLVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 M + + PR + ++ +ST K +EP E G+GHTLGN+LRRILLSS+ G A++ Sbjct: 1 MAIRLGRYEMPRSIVKDETVSNSTFGKYIIEPFESGYGHTLGNSLRRILLSSLEGAAISS 60 Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD 118 V+I+GV+HE++T EGV ED+++I+LNLK + +++ + + ++ G VTA DI D Sbjct: 61 VKIEGVMHEFTTMEGVVEDVVDIVLNLKKVLIKMPDRQTRVFRVDVFKEGAVTAGDIQVD 120 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178 VEIV P+ +IC L D+ + M ++V+ GRG++ ++++ ++ IG + +D +S Sbjct: 121 PGVEIVNPEQLICTL-DKKQRLLMELEVKVGRGFLLGE---YNKKQDQSIGVIPIDCLFS 176 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--- 235 PV + Y VE RV QRTD D+L+ E+ T+G I P+EA+ ++A IL L+ FV Sbjct: 177 PVRHVKYTVENTRVGQRTDYDRLIFEIWTDGRIGPDEALVQSAAILQHHLDIFVQYGKEP 236 Query: 236 ---DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + +P +KEE+ IL V+++EL+VR+ANCL I +G L +TE E+LK Sbjct: 237 VEFEKPKPPIKEEENRLRKILNMSVNEIELSVRAANCLNNANITTVGQLAMKTEAEMLKY 296 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLE 319 N GKKSL EIK+ LAS GLSLGM+ + Sbjct: 297 RNFGKKSLNEIKEKLASLGLSLGMKFD 323 >UniRef50_C4XLK3 DNA-directed RNA polymerase subunit alpha n=4 Tax=Desulfovibrionales RepID=RPOA_DESMR Length = 347 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 138/321 (42%), Positives = 203/321 (63%), Gaps = 8/321 (2%) Query: 6 TEFLKPRLVDIE-QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 TE +KP ++D + + T + EPLERGFG TLGNALRR+LLSS+ G A+ I+GV Sbjct: 16 TELVKPEVLDKDPSSTETFGRFVCEPLERGFGTTLGNALRRVLLSSLQGAAIVAARIEGV 75 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ST GV ED+ EI+LNLK + + + + LTL G V A+ I + +V ++ Sbjct: 76 QHEFSTIPGVIEDVTEIILNLKQVRLAMATDEPQRLTLLAKEKGEVRASAIQGNHNVSVL 135 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 +I L+ E+ + ++V+ G+GYVPA E + IG +L+DA +SPV+++A Sbjct: 136 SEDVLIATLS-EDRDFRIDLEVRMGKGYVPADMHEGLESE---IGLILLDASFSPVKKVA 191 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 Y +E ARV Q T+ DKLV+E+ T+G+I PE+AI +A IL +QL F++ + K Sbjct: 192 YTIEQARVGQMTNYDKLVLEVTTDGSIAPEDAISYSAKILKDQLTVFINFDEKESEAEKN 251 Query: 245 EKP---EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 + E +P L + +D+LEL+VR+ NCLK+ I +G+L+Q+TE E+LKT N GKKS Sbjct: 252 RRRDDIELNPSLFKSIDELELSVRATNCLKSANIQTVGELMQKTEHEMLKTKNFGKKSFE 311 Query: 302 EIKDVLASRGLSLGMRLENWP 322 EI+ VL GL GMR+EN+ Sbjct: 312 EIRRVLEDMGLEFGMRIENFD 332 >UniRef50_Q7UIC5 DNA-directed RNA polymerase subunit alpha n=6 Tax=Planctomycetales RepID=RPOA_RHOBA Length = 331 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 131/323 (40%), Positives = 197/323 (60%), Gaps = 11/323 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E VD + ++ T+ K + EP ERGFG ++GN++RR+LLSS+ G AVT+++I G H Sbjct: 11 ELPSSLEVDRDSLTQTYGKFSAEPFERGFGASIGNSMRRVLLSSLVGSAVTQIKIRGAQH 70 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 E++T GV ED+ +I+LN+K L V ++T+ ++ G VT AD+ D DVEI+ Sbjct: 71 EFTTIPGVLEDVTDIVLNVKSLIVNSNTDSTRVITVERNTAGVVTGADVQTDADVEIINK 130 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 HVIC LTD + M + V+ GRGYVP++ + IG + +DA +SP+ R+ Y Sbjct: 131 DHVICTLTD-DVPFMMEMVVETGRGYVPSTEHSSV---DHEIGIIPIDAVFSPIVRVRYE 186 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-------RQ 239 VEA RV Q+T+ D+L +E+ T+GTI+PE A+ AA IL + L FV R++ + Sbjct: 187 VEATRVGQKTNYDRLNLEIWTDGTINPEMALTEAAKILRKHLNPFVQYRELGPSIFSAAR 246 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + + + L + DL L+VR+ NCL++E I + DLVQRTE LL+ N G + Sbjct: 247 GGAGSPEAQLEAKLNMTLADLRLSVRANNCLESENIMTVRDLVQRTEDSLLEVRNFGDTT 306 Query: 300 LTEIKDVLASRGLSLGMRLENWP 322 L E+++ L+ GL LGMR+ N P Sbjct: 307 LNEVREKLSQYGLHLGMRVPNQP 329 >UniRef50_C7MLS1 DNA-directed RNA polymerase subunit alpha n=3 Tax=Coriobacteriaceae RepID=C7MLS1_CRYCD Length = 316 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 133/321 (41%), Positives = 199/321 (61%), Gaps = 14/321 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +TEF++P + E+VS T A+ ++PLERG+G+TLGN +RR+LL+S+ G A T ++IDGV Sbjct: 1 MTEFMRPT-ITTEEVSDTVARFVVDPLERGYGYTLGNTMRRVLLNSLDGAAATAIQIDGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 HE++T EGV EDI +I+LN+KGL V +D E ++ G VT AD+ + Sbjct: 60 QHEFATAEGVIEDITDIVLNVKGLVFSVFAEDAIEATAHVSAEGPCTVTGADLQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P HVI + D + M I++ GRGYV A ++ +E PIG + VD+ +SPV R Sbjct: 120 LVNPDHVIATVAD-GGQLDMTIRIGVGRGYVVAE---RNKRNEDPIGIIHVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 A +V RV Q TD DKL++E+ET+G++ P +A+ +AA I+ + + AF+ L + + E Sbjct: 176 CALSVTDTRVGQSTDYDKLILEVETDGSLTPTDAVCQAANIVTQYMGAFLSLNESEEEEE 235 Query: 243 -------KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 E E + L + ++DL+L+VRS NCLK IH + LV+ +E +LL N Sbjct: 236 GEVPSIFAPEGEETNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEYSENDLLNIRNF 295 Query: 296 GKKSLTEIKDVLASRGLSLGM 316 G KS+ E+KD L S GL+L Sbjct: 296 GAKSIEEVKDKLISMGLNLKQ 316 >UniRef50_C6C1B1 DNA-directed RNA polymerase subunit alpha n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=RPOA_DESAD Length = 346 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 141/319 (44%), Positives = 209/319 (65%), Gaps = 7/319 (2%) Query: 7 EFLKP-RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 E +KP +LV + + + K EPLERGFG T+GN+LRR+LLSSM G A V+I+GV Sbjct: 17 ELVKPEQLVRDPKSNELYGKFICEPLERGFGTTIGNSLRRVLLSSMQGAAAVAVKIEGVQ 76 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HE++T EGV ED+ EI+LN+K + + + LTL + G VTAADI + +V+++ Sbjct: 77 HEFTTIEGVMEDVTEIVLNIKQIRFAMTTDEPQFLTLRVNKQGVVTAADIQENQNVKVLN 136 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ +I L+ E + M +++ G+GYVPA E IG +++D+ +SP+ ++AY Sbjct: 137 PEQIIATLS-EKMDMEMTFEIRMGKGYVPADMH---EGLVNEIGHIILDSSFSPIRKVAY 192 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV--RQPEVK 243 +VE ARV Q T+ DKL+IE+ T+G++ PE+AI +A IL +QL F++ ++ Q E K Sbjct: 193 SVEQARVGQMTNYDKLIIEVFTDGSVTPEDAIAYSAKILKDQLSVFINFDEMGSEQEESK 252 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 E + +P L + +D+LEL+VR+ NCLKA I +G+LVQRTE +LKT N G+KSL EI Sbjct: 253 ESDLDLNPNLFKSIDELELSVRATNCLKAANIRIVGELVQRTEQTMLKTKNFGRKSLDEI 312 Query: 304 KDVLASRGLSLGMRLENWP 322 + VL S L GM LE++ Sbjct: 313 RRVLDSMELKFGMVLEDFD 331 >UniRef50_B2UL53 DNA-directed RNA polymerase, alpha subunit n=14 Tax=Bacteria RepID=B2UL53_AKKM8 Length = 374 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 130/324 (40%), Positives = 190/324 (58%), Gaps = 13/324 (4%) Query: 5 VTEFLKP-RLVDIEQVSS-THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + F P RL IE + H EP E G+GHTLGN+LRR+LL S+ G A+T V I Sbjct: 17 LARFEVPSRLEKIEDPNDANHLTFVAEPFENGYGHTLGNSLRRVLLGSLEGAAITSVRIA 76 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G HE+S+ GV ED+ EI+LNLK + + GK+ +L+L G VTAADI D + Sbjct: 77 GAQHEFSSLPGVVEDVTEIVLNLKKVKFKHNGKEPRLLSLRVHKQGVVTAADIADDTVYQ 136 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P +IC L D++ +V+ GRG+ ++ + PIG + +D+ +SPV R Sbjct: 137 VVNPDQIICTL-DQDTMFECEFQVRVGRGFATGD---ENKVPDMPIGVIPIDSIFSPVTR 192 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 + Y+V+ RV Q TD DKL++E+ T+G I P +A+ +A+ IL L+ FV+ D + Sbjct: 193 VKYSVQNTRVGQMTDYDKLILEVWTDGRIAPADAMLQASAILRHHLDVFVNYDDKQVNFE 252 Query: 243 K-------EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + EE +L V+++EL+VR+ANCL I +G L ++E E+LK N Sbjct: 253 EAPSAVQDEETARLRKLLNMSVNEIELSVRAANCLNNANITTVGQLAMKSESEMLKYRNF 312 Query: 296 GKKSLTEIKDVLASRGLSLGMRLE 319 GKKSL EIKD L GLSLG++++ Sbjct: 313 GKKSLNEIKDKLLELGLSLGVQVD 336 >UniRef50_Q0EW63 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EW63_9PROT Length = 325 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 156/324 (48%), Positives = 224/324 (69%), Gaps = 6/324 (1%) Query: 7 EFLKPRLVDIEQV-SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 + + PR + IE+ AK+ EPLERG+G T+GN+LRR+LLSS+PG AVT V +DGV Sbjct: 2 QLINPRHISIEEKVPGRAAKIVFEPLERGYGTTIGNSLRRMLLSSLPGAAVTSVLMDGVA 61 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 HEY + +GV+ED+++I+L+LK L +R++G + ++L G VTAADI + ++ Sbjct: 62 HEYDSIKGVREDVMDIILSLKELDLRMEGDEAATISLEIKGSAIVTAADIKCPAGLSVLN 121 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ ++ HL D +A + + V++GRGY PA+ R DER +G LLVDA YSP+ R++ Sbjct: 122 PELILAHLND-DAHLKIEAVVEKGRGYEPATDREV---DERAVGSLLVDASYSPIRRVST 177 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245 VEAARV QRT+ DKL++E+ETNG++ PEEA+ AA IL QL FVD +V E Sbjct: 178 RVEAARVGQRTNYDKLIMEIETNGSLSPEEALNSAAKILEAQLAVFVDFENVSIVSEPEG 237 Query: 246 KPEF-DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 + D +L++P++ L+L+VRS NCLK++ + +GDLVQR+E E+L+TPN G+KSL EIK Sbjct: 238 PDDTLDNLLIQPIEHLDLSVRSMNCLKSDDVFRVGDLVQRSEQEMLRTPNFGRKSLNEIK 297 Query: 305 DVLASRGLSLGMRLENWPPASIAD 328 +VL + GL LGM L NWPP A+ Sbjct: 298 EVLENMGLELGMDLPNWPPQEDAE 321 >UniRef50_C6HWA6 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWA6_9BACT Length = 322 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 139/317 (43%), Positives = 196/317 (61%), Gaps = 9/317 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 P+ + + S+ ++V +EP ERGFG T+GNALRR+LLSS+PG A+T + V HE+ Sbjct: 8 QMPKGLAVSHSSARSSRVVVEPFERGFGITVGNALRRVLLSSIPGVAITAIRAKNVFHEF 67 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 S GV ED+ +I+LNLK L ++ + E L L G V A+DI G VE++ P H Sbjct: 68 SNIPGVVEDVTDIILNLKSLRMKPLLQGEHWLHLKVKGPRIVKASDIDTVGAVEMMDPDH 127 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 VI L DE + M +K + GRGYVPA HS E +G + +DA ++P+ ++ Y VE Sbjct: 128 VIATL-DEGGHLDMDLKTEFGRGYVPAD---HSRSTETEVGIIPIDAIFTPINKVNYFVE 183 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD-----LRDVRQPEVK 243 + RV + TD D+L+ E+ET+G+I P EA+ AA IL L+ FV D ++ Sbjct: 184 STRVGRITDYDRLIFEIETDGSITPGEALSEAAKILRTHLDLFVSSDLHLANDSSPLSLE 243 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + I+ + V++LEL+VR+ANCLK+ I IG+LV RTE ELL+T N GKKSL EI Sbjct: 244 SNSSKEETIMDKSVNELELSVRAANCLKSSDIKKIGELVIRTEDELLQTKNFGKKSLDEI 303 Query: 304 KDVLASRGLSLGMRLEN 320 K+ L + GLSLGM L Sbjct: 304 KEALENIGLSLGMDLSK 320 >UniRef50_B8G8K2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Chloroflexus RepID=B8G8K2_CHLAD Length = 337 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 8/327 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ + PR V + + + + + PL+RG G +LGNALRR+LLSS+PG AVT ++ Sbjct: 1 METLELSLITPR-VTLLAAAENYGRFAIAPLQRGHGTSLGNALRRVLLSSIPGAAVTRIK 59 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 I GV+HE++ GV ED +++LN+KG+ +R V L L K G GPV A DI Sbjct: 60 ITGVIHEFTAIPGVVEDGTQLVLNVKGIRLRSYSDRAVALQLVKQGPGPVFAGDIDAPST 119 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEIV PQH +C + DE+ ++ M++ V+RGRG A T PIG + VDA +SP+ Sbjct: 120 VEIVNPQHYLCTIDDEHTTLEMQLTVERGRGVQLADTVSG-----MPIGEIAVDALFSPI 174 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 R+ + VE + T D+L+IE+ T+GTI P +A+ AA IL + V L + Sbjct: 175 PRVNFLVEEIGGDPLTGYDRLIIEIWTDGTIKPGDALSHAAQILTQYFSRIVSLNQPEES 234 Query: 241 EVKE--EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E + P D I R +D+L L+ R+ N L+ I IG L++ + L+ NLG K Sbjct: 235 EQQPTLPPPIPDEIANRTIDELGLSTRTYNSLRRADIQTIGQLLRLDDRGLMSIRNLGAK 294 Query: 299 SLTEIKDVLASRGLSLGMRLENWPPAS 325 + EI LA+ G G P + Sbjct: 295 GIEEIHQRLAALGYRSGETTSGHLPDT 321 >UniRef50_UPI0001C30ED1 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED1 Length = 333 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 135/338 (39%), Positives = 190/338 (56%), Gaps = 30/338 (8%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + +F PR + E V T+EPL+RGFG+T GN+LRR+LLSS+ G AVT V I+GV Sbjct: 1 MLDFQVPR-ITTETVEENRGSFTIEPLDRGFGYTFGNSLRRVLLSSLAGAAVTSVRIEGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDVEI 123 HE+ST GV+ED+ +I+LNLKG+ R+ E+ L +G G +TA DI VEI Sbjct: 60 AHEFSTIPGVKEDVTDIVLNLKGIVCRMHSDATEIEAPLVVTGPGDITAKDIDLPSGVEI 119 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P I L ++ + + + + RGRGY PA ++ ++PIG + +D+ +SPV R+ Sbjct: 120 LNPDAHIATL-EKKTKLEVYLTIGRGRGYRPAE---ENKSPDQPIGVIPIDSIFSPVRRV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---- 239 AY VE ARV Q+TD DKL +++ET+G+IDP A+R AA IL QL F D V + Sbjct: 176 AYAVEQARVGQKTDYDKLTLDIETDGSIDPHAALREAAEILISQLAIFTDADRVIELRDT 235 Query: 240 --------------------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIG 279 + + +++LEL VRS NCLK I +G Sbjct: 236 GGLGALEPGLAGGGVGGVGGHGAGPGGRPANAMDDILIEELELGVRSYNCLKRAGIQTVG 295 Query: 280 DLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 DL+ +TE EL PN GKKS+ E+ + L RGL L Sbjct: 296 DLISKTENELNAIPNFGKKSIDEVIETLEGRGLHLRQD 333 >UniRef50_Q1AU56 DNA-directed RNA polymerase subunit alpha n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RPOA_RUBXD Length = 313 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 183/308 (59%), Gaps = 6/308 (1%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + P +E+ H EPL RG GHTLGNALRR++LS +PG AVT++ I+GV HE+ Sbjct: 5 VAPPRFRVEEEDERHGIFVAEPLPRGLGHTLGNALRRVMLSGLPGAAVTKLRIEGVQHEF 64 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 ST EGV+ED+++I+LN+K L R++ + + L ++K G G V +DI DVE+V P Sbjct: 65 STIEGVREDVVDIILNVKQLKFRLERDEPIELQISKDGPGEVRGSDIELKADVEVVNPDA 124 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I L+ E + M + V+RG+GYVPA ++ D PIG + VD+ +SPVE++ Y V Sbjct: 125 YIASLS-EGGHLDMTLTVERGQGYVPAE---QNKSDADPIGVIAVDSLFSPVEKVQYRVS 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 R R DLD L +E+ T+G + P EA+R A+ L + F + + + Sbjct: 181 ETRAGARVDLDALTLEVFTDGRLGPREALREASRKLIDFFGLFAEGYQGAGAAEEPGRSG 240 Query: 249 FDPIL--LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 P++ RP++DLELTVRS NCLK E + IG L TE EL+ NLG KS+ EI+ Sbjct: 241 GRPVITDERPIEDLELTVRSYNCLKREGVDTIGQLATMTEEELMNIRNLGMKSVDEIRSK 300 Query: 307 LASRGLSL 314 L G +L Sbjct: 301 LEEYGYTL 308 >UniRef50_Q3B6D6 DNA-directed RNA polymerase subunit alpha n=10 Tax=Bacteria RepID=RPOA_PELLD Length = 328 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 192/325 (59%), Gaps = 14/325 (4%) Query: 7 EFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + P +++++ + + + +PLERG+G TLGN +RR+LL+S+PG A+T +++DGV Sbjct: 4 QMQMPAKIEVDEATHTDQYGRFIAQPLERGYGVTLGNMMRRVLLASLPGTAITGIKVDGV 63 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH-DGDVEI 123 HE+S+ EGV+ED+ EI+LNLK + + K TL+ G TA DI +G+ E+ Sbjct: 64 FHEFSSIEGVREDVPEIVLNLKKVRFKSTCKRSCKTTLSIVGPKDFTAGDIVAQEGEFEV 123 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + I + +E +++++ + + RGRGY PA S D PIG + +DA Y+P+ + Sbjct: 124 LNKDLYIATV-NEGSTLNIDVYIGRGRGYTPAE---ESRPDSMPIGYIAIDAIYTPIRNV 179 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---- 239 + VE RV QRTD +K+V+++ET+G+I P+++I A I+ E + F + + Sbjct: 180 KFAVENTRVGQRTDYEKMVLDVETDGSITPDDSISLAGRIINEHVTFFANFSPTEEEFTE 239 Query: 240 ---PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 + +E +L ++DL+L+VRS NCL+ I IGDLV R E ELL N G Sbjct: 240 EEYKQQDDEFETMRRLLNTKIEDLDLSVRSHNCLRLAEIDTIGDLVSRKEDELLNYKNFG 299 Query: 297 KKSLTEIKDVLASRGLSLGMRLENW 321 KKSLTE+K+ L L GM + + Sbjct: 300 KKSLTELKEQLEKFELKFGMDITRY 324 >UniRef50_B4U772 DNA-directed RNA polymerase subunit alpha n=3 Tax=Aquificaceae RepID=RPOA_HYDS0 Length = 319 Score = 329 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 190/315 (60%), Gaps = 5/315 (1%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + EF+ P + E+ + + +EPLERG+G T+GNALRR+LLSS+ G A+T V+I+GV Sbjct: 1 MKEFIFPMKIYWEEKDKNYGRFVVEPLERGYGTTIGNALRRVLLSSIYGSAITAVKIEGV 60 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ST EGVQED+L+I+ NLK + ++ D IL L K+ G V A+DI +V I+ Sbjct: 61 QHEFSTIEGVQEDVLQIIANLKNVRFDLKDSDLEILYLEKNAPGVVLASDIKTPPNVTII 120 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 I + N ++ M I+++RG+GYV + E G +++DA +SP++ A Sbjct: 121 NKDAYIATINSANTTLKMEIRIERGKGYVMSDEM----EQIGEAGWVVLDADFSPIKVAA 176 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-RDVRQPEVK 243 + VEA RV RTD DKL E+ TNG + P+ AI++A ++ + + ++ +V Sbjct: 177 FRVEATRVGDRTDYDKLTFELTTNGVVSPDTAIQQAVELIVKHMNMLTNISYEVPTLPEP 236 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 E L +++L+++ R+ N LK + IG+LVQ TE EL + N+G+K+LTEI Sbjct: 237 MPPDELMEKLTFSIEELDISQRALNSLKRIGVTTIGELVQLTEDELKSSKNIGRKALTEI 296 Query: 304 KDVLASRGLSLGMRL 318 K+ L + G SLGM + Sbjct: 297 KEALKNMGFSLGMNI 311 >UniRef50_B5YG22 DNA-directed RNA polymerase, alpha subunit n=22 Tax=Bacteria RepID=B5YG22_THEYD Length = 343 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 140/331 (42%), Positives = 211/331 (63%), Gaps = 19/331 (5%) Query: 3 GSVTEFLKPRLVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 EF P+ V+ +Q + T+ K+ +EPLERG+G TLGN+LRR+LLSS+ G AV + Sbjct: 2 NLYKEFQMPKKVEFDQESLTDTYGKLVIEPLERGYGITLGNSLRRVLLSSLDGVAVYAIR 61 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHD 118 I+ LHE+S+ +GV+EDIL+I+LN+K L + Q D+ I T+ G VTA I D Sbjct: 62 INDALHEFSSIKGVKEDILDIILNVKKLRFKYYAQDSDKKIATIKIKGPADVTAESIQTD 121 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178 G E++ IC L D++A + M + +++GRGYVP+ ++DE P+ + VDA +S Sbjct: 122 GTYEVLNKSQYICSL-DQDAQMEMVLYIRKGRGYVPSEAI---KDDELPVDAITVDAIFS 177 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE--AFVDLRD 236 PV+++ + VE RV + TD D+L++E+ T+G+I PE AI A++IL + E F + Sbjct: 178 PVKKVNFRVEKTRVGELTDYDRLILEIWTDGSITPERAISDASSILIKHFEYLIFFKEAE 237 Query: 237 VRQPEVKEEKPEFDPILL---------RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 ++ E+ E P + L +P++DLEL+VR+ NCLK+ I+ I +LVQRTE Sbjct: 238 LQNKEIHETVPNPEEDLNFDLLNENILKPIEDLELSVRAYNCLKSAGINTIAELVQRTEG 297 Query: 288 ELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 EL+KT N G++SL EIK+VL + GL LGMR+ Sbjct: 298 ELMKTKNFGRRSLEEIKEVLTNMGLKLGMRI 328 >UniRef50_C7N7V0 DNA-directed RNA polymerase subunit alpha n=2 Tax=Slackia RepID=C7N7V0_SLAHD Length = 316 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 133/321 (41%), Positives = 197/321 (61%), Gaps = 14/321 (4%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + EF++P V E+VS T A+ +EPLERGFG+TLGN +RR+LLSS+ G T ++I+GV Sbjct: 1 MAEFMRPT-VTTEEVSDTDARFVVEPLERGFGYTLGNCMRRVLLSSLDGARATAIQIEGV 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 HE++T EGV ED+ +I+LN+KGL +D E T++ G VT ADI + Sbjct: 60 QHEFTTAEGVIEDVTDIVLNVKGLVFAALTEDYTEATATISVEGPCTVTGADIQVPTEFT 119 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 ++ P+HVI + D +++M I++ GRGYV A ++ E PIG + VD+ +SPV R Sbjct: 120 LINPEHVIATVAD-GGTLNMSIRIGVGRGYVSAE---RNKRTEDPIGIIPVDSLFSPVRR 175 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV 242 V RV QRTD D+L++E+ET+G+I P EA+ RAA I+ + + AF+ L D+ + Sbjct: 176 CTLAVNDTRVGQRTDFDQLLLEVETDGSIAPNEAVCRAANIINQYMGAFLTLADITDEDE 235 Query: 243 KEEKP-------EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 + E + L + ++DL+L+VRS NCLK IH + LV+ +E +LL N Sbjct: 236 GDIPSIFATEGQESNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEFSENDLLNIRNF 295 Query: 296 GKKSLTEIKDVLASRGLSLGM 316 G KS+ E+KD L S L+L Sbjct: 296 GAKSIEEVKDKLISMDLNLKQ 316 >UniRef50_Q5HAU5 DNA-directed RNA polymerase subunit alpha n=189 Tax=Proteobacteria RepID=RPOA_EHRRW Length = 374 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 135/336 (40%), Positives = 211/336 (62%), Gaps = 9/336 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSS--THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 M + KP + + + A + +EPLE GF TLGNALRR+++SS+ G AV Sbjct: 32 MSDHWNKLTKPSSIKVVNHGNALNKADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYG 91 Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD 118 VEI+ VLHE+++ GV+ED+ +ILLN+ + +++ G D +L+L G V + I Sbjct: 92 VEIENVLHEFTSISGVREDVTDILLNISMIRLKLSGMDNKVLSLKVKGPCEVRSGMIADT 151 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE---DERPIGRLLVDA 175 D I+ +IC L D++ ++++ V G+GYVPA R + ++ P+ + +A Sbjct: 152 PDCTILNKDLLICTL-DQDVDFNIKMYVNSGKGYVPAVKRKSINKFGLNDVPVNFIATNA 210 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 YSP+++ ++ VE++R+ Q TD D+L++ +ET+ +I P+EA+ AA IL +Q + F++ Sbjct: 211 LYSPIKKASFRVESSRIGQFTDYDRLIMSVETDHSILPDEAVALAARILQDQFQQFINFD 270 Query: 236 DVRQPEVKEEKPEFDPI---LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + +P K + + P LLR VD+LEL+VRS NCLK + I YIGDLVQ+TE ++L+T Sbjct: 271 ETDEPHQKVDTKDVLPYDSNLLRKVDELELSVRSYNCLKNDNITYIGDLVQKTESDMLRT 330 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 PN G+KSL EI ++LAS L LGM++ NWPP SI Sbjct: 331 PNFGRKSLNEINELLASMNLHLGMKIANWPPESIES 366 >UniRef50_B5YDX0 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Dictyoglomus RepID=B5YDX0_DICT6 Length = 324 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 190/303 (62%), Gaps = 6/303 (1%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 V +E+ S + + +EPLERG+G T+GNALRRILLSS+ G AV V+IDGV HE G Sbjct: 8 VIVEKRSEDYGRFVIEPLERGYGWTIGNALRRILLSSIEGAAVVSVKIDGVRHELEVLPG 67 Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 ++E+ILE+L+NLK L V+++ + IL ++ G VTAAD +V+IV P VI L Sbjct: 68 LKEEILEVLMNLKKLVVKIEDNNSHILEIDTRGPKVVTAADFIVPSNVKIVNPDLVIATL 127 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 E+ M ++V++G+GYV A +++ PIG L++D+ +SPV++++Y VE RV Sbjct: 128 V-EDMPFHMEVEVKKGKGYVSAE---ENKDQNYPIGVLVLDSIFSPVKKVSYTVEKTRVG 183 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 +RTDLD+L++E+ TNG+I PEEA R A+ IL E + E + + + Sbjct: 184 RRTDLDRLILEIWTNGSISPEEAFREASRILMEYFRLLNEKEFQLPYEEVKPENTYLEEE 243 Query: 254 LR--PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 + ++DL L+ R+ N L+ IH I DL+ +T EL+K N G+KSL E+++ L +G Sbjct: 244 KKGLTLEDLGLSTRAYNSLRHAGIHTIEDLLSKTREELMKIKNFGQKSLQELEEKLREKG 303 Query: 312 LSL 314 LSL Sbjct: 304 LSL 306 >UniRef50_D1B5U6 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Synergistaceae RepID=D1B5U6_THEAS Length = 342 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 146/337 (43%), Positives = 192/337 (56%), Gaps = 25/337 (7%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 + +E+V+ +H +V LEPLERG+G TLGNALRR+LLSS+PG + V +DGVLHE+ST Sbjct: 7 EIIVEEVTPSHGRVVLEPLERGYGTTLGNALRRVLLSSIPGAGIVAVRVDGVLHEFSTIP 66 Query: 73 GVQEDILEILLNLKGLAVRVQGKDE--VILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 130 GV+ED++E+LLNLK + VRV G +L L G V AADI D DVE V P+ VI Sbjct: 67 GVREDVIELLLNLKHVPVRVSGPGTDVKVLRLEAEGPKVVRAADIQGDADVEFVDPEAVI 126 Query: 131 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAA 190 C L DE +SM + ++RG GY P P+ LL+DA +SPV+R+ Y V+ Sbjct: 127 CTL-DEGHRVSMDLYIERGVGYAPID---RPRPSYLPVDALLIDAIFSPVKRVRYEVQDV 182 Query: 191 RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ----------- 239 R QRTD D+LV+E+ TNG + +A+ A++IL+ + Sbjct: 183 RSGQRTDYDRLVLEVWTNGVVSFRDAVAEASSILSGYFRGLSTSLWGQSSAVTAGDEDFF 242 Query: 240 --------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 EV E D +L RP+ DLEL+VRS NCL IH IGDLV R + ELLK Sbjct: 243 EEKDEEDLQEVPAVCGEDDSVLSRPIKDLELSVRSENCLLRGGIHRIGDLVSRPKEELLK 302 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 NLGK SL EI++ L GLSL + D Sbjct: 303 IRNLGKISLREIEEKLGKFGLSLKGEEPSGEADQAED 339 >UniRef50_C0Q9U7 DNA-directed RNA polymerase subunit alpha n=2 Tax=Bacteria RepID=RPOA_DESAH Length = 340 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 139/324 (42%), Positives = 210/324 (64%), Gaps = 11/324 (3%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 E + P V + +ST+ K EPLE+G+G T+GN+LRRI+LSS+ G A+ V+ LH Sbjct: 13 EIIMPEKVAV-TTTSTYGKFVCEPLEKGYGITIGNSLRRIILSSLYGAAIVSVKFSEALH 71 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH-DGDVEIVK 125 EYS V+ED+ EI++NLK + +++ + ILT+N G VTAADI DG VEI+ Sbjct: 72 EYSVVSDVREDVSEIIMNLKEVKLKLDDPGDKILTINVKGEKFVTAADIISGDGRVEILN 131 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 P+ I ++ + + M + V+ G+GY A +++ E P+G + +D+ +SP++R+ Y Sbjct: 132 PEQHIATVS-KGGELMMTMLVKTGKGYALA---ASNKDPEAPVGTIPIDSVFSPIKRVKY 187 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEE 245 V A+R+ Q+TD DKL +E+ T+G++ PE+++ AA IL EQ+ F++ + +PE+ E+ Sbjct: 188 VVGASRIGQKTDYDKLTMEIWTDGSVTPEDSVAYAAKILKEQMNPFINFDEDIEPELVEK 247 Query: 246 KPE-----FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 + E F+ L R VD+LEL+VRS+NCLK I I LVQ+T+ E+LKT N G+KSL Sbjct: 248 EHEGAAKNFNENLYRSVDELELSVRSSNCLKNAQILKIYQLVQKTDNEMLKTKNFGRKSL 307 Query: 301 TEIKDVLASRGLSLGMRLENWPPA 324 EIK+VL S LSLGM LE + P Sbjct: 308 NEIKEVLTSMDLSLGMDLEGFEPP 331 >UniRef50_A6GZ73 DNA-directed RNA polymerase subunit alpha n=80 Tax=Bacteria RepID=RPOA_FLAPJ Length = 330 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 194/328 (59%), Gaps = 14/328 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ F KP V + + K PLE G+G T+GNALRR+LLS++ G A+T + I+G Sbjct: 2 ALFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSIRIEG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVR--VQGKDEVILTLNKSGIGPVTAADIT-HDGD 120 V HE+ST GV ED+ EI+L+LK + + ++ D +T+ SG +TA D + Sbjct: 62 VDHEFSTIPGVVEDVTEIILSLKQVRFKRQIEDIDNESVTIAISGKNQITAGDFQKYISG 121 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 +++ P+ VIC+L + + +M + +++GRGYVPA +++ IG + D+ ++PV Sbjct: 122 FQVLNPELVICNLDSK-VNFNMEMTIEKGRGYVPAE---ENKKQNAAIGTIFTDSIFTPV 177 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV--- 237 + + Y +E RVEQ+TD +KLV E++T+G+I+P++A+ AA +L F D R Sbjct: 178 KNVKYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEA 237 Query: 238 ----RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + EE +L + D++L+VR+ NCLKA + +GDLV + +L+K Sbjct: 238 DEIAQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFR 297 Query: 294 NLGKKSLTEIKDVLASRGLSLGMRLENW 321 N GKKSLTE+ +++A + L+ GM L + Sbjct: 298 NFGKKSLTELDELVAIKNLTFGMDLAKY 325 >UniRef50_A5CCI9 DNA-directed RNA polymerase subunit alpha n=158 Tax=Bacteria RepID=RPOA_ORITB Length = 342 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 140/328 (42%), Positives = 214/328 (65%), Gaps = 9/328 (2%) Query: 6 TEFLKPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +KP V E + + +EPLERG G TLGN+LRR+LLSS+ G A+T ++I G Sbjct: 10 SSLIKPTKVQYEAVDNNPNIKTMVVEPLERGLGLTLGNSLRRVLLSSLRGAAITSIKIPG 69 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHD--GDV 121 V HE S GV+ED+ +I+LN++ + V++ + L L +G VTA IT DV Sbjct: 70 VEHELSPVSGVKEDLTDIILNIRDVIVKMDSVQKCNLRLEVTGPAVVTAGMITVTDKQDV 129 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ PQHVIC+L+ + ++ M + ++G+GYVP S +S+ PIG + +DA ++PV Sbjct: 130 TILNPQHVICNLS-KGFNLEMDLICEQGKGYVPTSCLHNSDS---PIGAIHLDALFNPVR 185 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 R++Y VE + V Q T+ DKL+I +ETNG ++P+ A+ AA IL +QL+ F++ ++V + + Sbjct: 186 RVSYKVENSMVGQMTNYDKLIITVETNGVVNPDAALGLAARILLDQLQVFINFQEVEEEK 245 Query: 242 VKEEKPEF-DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 ++ + + +P+LL+ V +LEL+VRS NCLK E I Y+GDLV RTE ++LKT N G+KSL Sbjct: 246 PEKLELQTINPVLLKKVYELELSVRSQNCLKNENIVYVGDLVARTETQMLKTANFGRKSL 305 Query: 301 TEIKDVLASRGLSLGMRLENWPPASIAD 328 E+K VLA+ L GM+ WPP ++ Sbjct: 306 NELKKVLANFNLEFGMKDIGWPPDNLES 333 >UniRef50_B0SA20 DNA-directed RNA polymerase subunit alpha n=8 Tax=Bacteria RepID=RPOA_LEPBA Length = 325 Score = 313 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 204/324 (62%), Gaps = 12/324 (3%) Query: 2 QGSVTEFLKPRLVDI--EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV 59 + + F +P+ ++ + + + K EP ERG G T+GN+LRR L+SS+ G A++ + Sbjct: 4 KNLLKGFKRPKKIEFTTDVNTPNYGKFVAEPFERGIGTTIGNSLRRTLMSSIEGAAISAI 63 Query: 60 EIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKD---EVILTLNKSGIGPVTAADIT 116 I+GV HE+S EGV ED+ I+LNLK + ++ + +D ++ L G G AAD+ Sbjct: 64 RIEGVSHEFSYIEGVAEDVTRIILNLKQVRIKYEPEDKEASKVIHLELKGAGYFRAADLA 123 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 D +EI+ P I L +E+A++ M +++QRGRGYVPA + ++D +G + +D+ Sbjct: 124 VDSSIEIMNPDLHIATL-NEDANLIMDLEIQRGRGYVPAEDK---KKDIEVLGTIPIDSI 179 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 +SP++++ + V RV QR+D +KL +E+ T+G++ PE+A+ +AA IL + L F++ + Sbjct: 180 FSPIQKVLFEVSETRVAQRSDYEKLTMEVWTDGSVSPEDAVAQAAKILKDHLTVFINFEE 239 Query: 237 VRQPEVKEEKPEFDPI---LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + E +E + + L + V++LEL+VRS N L++ I +IG+LV+R+E E+ K+ Sbjct: 240 EIEEEEEELDEADEKLKAALSKHVEELELSVRSTNVLRSLEIDFIGELVKRSEDEMTKSK 299 Query: 294 NLGKKSLTEIKDVLASRGLSLGMR 317 + ++SL E+K L+S GLS GMR Sbjct: 300 HFSEQSLLELKAKLSSMGLSFGMR 323 >UniRef50_Q11QD8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Bacteroidetes RepID=RPOA_CYTH3 Length = 329 Score = 313 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 193/327 (59%), Gaps = 13/327 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 S+ F P V +E+ H +PLE+G+G T+GNALRRILLSS+ G A+T +++ G Sbjct: 2 SILSFQMPEKVVMEKADDFHGLFEFKPLEKGYGVTIGNALRRILLSSLEGYAITGIKVPG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLNKSGIGPVTAADI-THDGDV 121 VLHE+ST GV+ED+ EI+LNLK + ++ +E + ++ A DI Sbjct: 62 VLHEFSTIPGVREDVTEIILNLKQVRFKKISDVNENKIVVSIKKQASFKAGDIAKFTSAY 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 +I+ P+ +IC++ D N++ + + +++GRGY+PA ++ E+ G + +DA ++P++ Sbjct: 122 QILNPELLICNV-DSNSNFDIELTLEKGRGYLPAE---ENKPAEQIFGYIPIDAIFTPIK 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ-- 239 + Y+VE RVEQRTD +KL++E+ T+G+I PE+A++ AA IL + F D + Sbjct: 178 NVKYSVENTRVEQRTDYEKLILEILTDGSIHPEDALKGAANILIKHFMLFSDQTMTFEAV 237 Query: 240 -----PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 V EE +L + DL+L+VR+ NCLKA I +G+L +++K N Sbjct: 238 KAEEEETVDEEFLHMRKLLKTSLADLDLSVRAYNCLKAADIKTLGELATLDISDMMKFRN 297 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLENW 321 GKKSL E++ ++ + LS GM + Sbjct: 298 FGKKSLNELEQLIIDKNLSFGMDTAKY 324 >UniRef50_C7HSB2 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Anaerococcus RepID=C7HSB2_9FIRM Length = 317 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 196/312 (62%), Gaps = 12/312 (3%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++DI++ + + K L PLERG+G T+GN++RR+LLSS+PG +V+++ IDGVLHE+S Sbjct: 8 KIEILDIDEET-NYGKFVLYPLERGYGTTIGNSMRRMLLSSLPGSSVSKILIDGVLHEFS 66 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV ED+ E++LN+KG+ ++ K+++ L L+ G VTA DI D +++ P H Sbjct: 67 TIPGVVEDVPELILNIKGIDIKKHTKEDITLFLDIEGPKIVTAKDIKTDAQIDVANPDHY 126 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 + + D+ + + + V G+GY A +++D PIG + +D+ ++PV+ + + VE Sbjct: 127 LATVNDKG-RLFIALDVTDGKGYRVAE---QNKKDTDPIGAIAIDSSFTPVKSVNFTVEN 182 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP-------EV 242 RV + TD DKL++E+ T+GTI P+EA+ A+IL E + F DL + P Sbjct: 183 TRVGESTDYDKLILEVWTDGTITPQEALSEGASILMEDIRFFKDLPGQQFPPEDEEEEIE 242 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + E+ L + +++L+L++RS NCLK + +G++++++E EL N GKKSL E Sbjct: 243 EIEEDNNQMELSKTIEELDLSLRSFNCLKRAGYNTVGEIIEKSESELKDIKNFGKKSLEE 302 Query: 303 IKDVLASRGLSL 314 + D + S GLSL Sbjct: 303 VIDKIHSLGLSL 314 >UniRef50_C1DX45 DNA-directed RNA polymerase, alpha subunit n=4 Tax=Hydrogenothermaceae RepID=C1DX45_SULAA Length = 326 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 187/321 (58%), Gaps = 15/321 (4%) Query: 4 SVTEFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S+ +F+ P + ++ + K+ +EPLERG+G TLGNALRR+LLSS+P A+T V+I Sbjct: 3 SLLDFVMPSKIYWDESTKTENFGKLYVEPLERGYGITLGNALRRVLLSSLPSGAITAVKI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGD 120 GV HE++T +GV ED+ EI+LNLK + +++ + L G G V A DI Sbjct: 63 VGVPHEFTTVKGVIEDVSEIILNLKQIRLKIDENIERDFAILEVEGPGKVFAKDIKAPPG 122 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 +EIV P IC L+ EN + M +++RGRGY ED IG +L+D +SP+ Sbjct: 123 IEIVNPDEYICTLS-ENVKLQMEFRIERGRGYKTVEEL----EDINEIGWILIDTSFSPI 177 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 +R + VE RV +TD D+L++E+ET+GTI P+EA+ ++A IL E + Sbjct: 178 KRCTFFVEPVRVGDKTDYDRLILEIETDGTITPDEALEKSANILIEHFTLLQKPTVRKAQ 237 Query: 241 EVKEEKPEFDPILLRP-------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 +K+ L +D+LE++ R+ N L+ I+ IGDLV+ +E +L + Sbjct: 238 VIKKTVAPKTEELKIEEDKLSLAIDELEISSRAINTLRKLGINTIGDLVKLSEDDLKEAK 297 Query: 294 NLGKKSLTEIKDVLASRGLSL 314 ++G+KSL EIKD LA GL L Sbjct: 298 SIGRKSLKEIKDALADMGLEL 318 >UniRef50_C1A4J0 DNA-directed RNA polymerase alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A4J0_GEMAT Length = 357 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 135/346 (39%), Positives = 195/346 (56%), Gaps = 24/346 (6%) Query: 5 VTEFLKPRLVD--IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 ++ ++P+LV+ + S A+ L+PLERGFGHTLGNA+RR+LLSS+ G AV ID Sbjct: 6 LSGLVRPQLVEATKREDSPNLAEFRLQPLERGFGHTLGNAMRRLLLSSLRGSAVWAFRID 65 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDV 121 GV+HE+ T GV ED+ +I+ NLK L + + + ++ +L ++KSG G VTAADI G V Sbjct: 66 GVVHEHQTIGGVVEDVHQIIGNLKTLTLALPDEVEQTVLRISKSGPGTVTAADIIATGGV 125 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 I+ P H I +T E ++ + V +GRGY+ + + + + +DA YSPV Sbjct: 126 RIIDPSHHIFTITGER-DFNIELYVNKGRGYIESDQHPADK--NLSVDVVRIDAIYSPVR 182 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 R+ + V RV QRTD D+L + +ETNGT+ PEEA+ AA + + FV + Sbjct: 183 RVNFTVAETRVGQRTDYDRLTLTVETNGTMSPEEAVSYAAALAQTHFQYFVGFGSSASAQ 242 Query: 242 VKEEKP-------EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 + P+DDLEL+VRS N LK I +GDLV++TE ++L+ N Sbjct: 243 PGTAGDGANSDAIRLAELFRTPIDDLELSVRSVNSLKNSNIRSLGDLVRQTEAQILQVKN 302 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE-----------NWPPASIADE 329 GKKSL EI +L GL+ GMR E PP+ A+ Sbjct: 303 FGKKSLQEIAALLEKEGLNFGMRYEESADGVRILDMGTPPSRAAEN 348 >UniRef50_Q9KWU8 DNA-directed RNA polymerase subunit alpha n=2 Tax=Thermus aquaticus RepID=RPOA_THEAQ Length = 314 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 175/316 (55%), Gaps = 11/316 (3%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 + LK + + + LEPLERGFG TLGN LRRILLSS+PG AVT V I+ V Sbjct: 2 LESKLKAPVFTATTQGDHYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDV 61 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVE 122 LHE+ST GV+ED++EI+LNLK L VR L L G V A D T DVE Sbjct: 62 LHEFSTIPGVKEDVVEIILNLKELVVRFLDPKMASTTLILRAEGPKEVRAGDFTPSADVE 121 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ P I L +E + M ++V RG GYVPA + I + VDA +SPV R Sbjct: 122 IMNPDLHIATL-EEGGKLYMEVRVDRGVGYVPAERHGIKDR----INAIPVDAIFSPVRR 176 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD----LRDVR 238 +A+ VE R+ QRTDLDKL + + T+G++ P EA+ +A IL E L F + L Sbjct: 177 VAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVAILKEHLNYFANPEASLLPTP 236 Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 + E++ + L P+++L L+ R + LK E I + L+ +L P +G++ Sbjct: 237 EVSKGEKRESAEEDLDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLRNIPGIGER 296 Query: 299 SLTEIKDVLASRGLSL 314 SL EI+ LA +G +L Sbjct: 297 SLEEIRQALAKKGFTL 312 >UniRef50_B2KEJ3 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEJ3_ELUMP Length = 329 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 199/331 (60%), Gaps = 21/331 (6%) Query: 4 SVTEFLKPRLVDIEQVS--STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 + + + P + +++ + + ++ EP E G+GHT+GN+LRRILLS + G AVT V + Sbjct: 2 AFNQLVLPTKIQLDEKTVTPFYGRIIAEPYESGYGHTVGNSLRRILLSGLDGSAVTAVRV 61 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDV 121 G +HEYST V+ED++ ILLNLK L V+++GK+ + L S G VTA DI V Sbjct: 62 RGAVHEYSTIPNVKEDVINILLNLKKLRVKLEGKNREYVYLTASKPGKVTAKDIAEVSGV 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 EI+ I +L ++ + + I++ +G+GYVPA + +RP G + VDA +SP+ Sbjct: 122 EIINKDLEIANL-EQGGKLELEIEISQGKGYVPAEDLS---KIQRPAGFIPVDAIFSPIL 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 ++ Y+VE ARV Q+TD D+LVI++ T+GT++P +A+ +AA +L++ L F + Sbjct: 178 KVHYDVEPARVGQKTDYDRLVIQITTDGTLEPAKALHKAAVLLSQSLHIFTIEGEEVNAA 237 Query: 242 VKEEKP---------------EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 E +P + + +L + V+ +EL+ RS NCLK+E ++ + DLV +TE Sbjct: 238 APETEPLSTTGSVSGVSAVNSKVEELLNQSVEFIELSSRSINCLKSEGVNTVKDLVSKTE 297 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 +L N G +SL E+K+ LA LSLGM+ Sbjct: 298 DDLKMIKNFGTRSLDEVKERLAEMNLSLGMK 328 >UniRef50_C7REF5 DNA-directed RNA polymerase, alpha subunit n=3 Tax=Clostridiales RepID=C7REF5_ANAPD Length = 318 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 122/308 (39%), Positives = 187/308 (60%), Gaps = 12/308 (3%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + K L PLERG+G T+GN++RR+LLSS+PG +V+++ I+GVLHE+ST +GV ED Sbjct: 15 DEEENYGKFALYPLERGYGTTIGNSMRRVLLSSLPGSSVSKILIEGVLHEFSTIDGVVED 74 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 + EI+LN+KGL V ++V L L+ G VTA DI D V+I P H I + +E Sbjct: 75 VPEIVLNIKGLDVTKHVDEDVTLFLDIEGPKIVTAKDIKADSSVDIANPDHYIATV-NEK 133 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 + + + + V G+GY + ++++ PIG + +D+ ++PVE++ + VE RV + TD Sbjct: 134 SRLFIAMDVTDGKGYRVSDD---NKKESDPIGAIAIDSSFTPVEKVNFTVENTRVGESTD 190 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP--------EVKEEKPEF 249 DKLV+E+ TNGTI P+EA+ ++IL E F +L + + P E EE+ Sbjct: 191 YDKLVMEVWTNGTITPQEALAEGSSILIENFSFFNELPNQQFPPEVEEEEIEEVEEEDSL 250 Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 L +++L+L++RS NCLK +GD+++ +E EL N GKKSLTE+ + L Sbjct: 251 SEDLAMTIEELDLSLRSFNCLKRAGFDRVGDIIKVSESELKTIKNFGKKSLTEVIEKLDE 310 Query: 310 RGLSLGMR 317 GLSL Sbjct: 311 LGLSLKDE 318 >UniRef50_O46914 DNA-directed RNA polymerase subunit alpha n=5 Tax=Eukaryota RepID=RPOA_GUITH Length = 318 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 13/319 (4%) Query: 5 VTEF-LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +T+F ++ + ++ ++PL+ G G TLGNALRR LLS + G A+T V I G Sbjct: 1 MTQFEIECLDSKVYNARDHWSRFVIDPLKPGQGTTLGNALRRTLLSELEGLAITAVRIAG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 V HE+ST G++ED+LEILLNLK + Q ++ I L G VTA ++++ Sbjct: 61 VSHEFSTINGIREDVLEILLNLKEIVFSGQLQESTIGRLTVQGPAIVTARSFELPPEIKL 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P+ I + N ++ M K++ G GY +E E L VD+ + PV+++ Sbjct: 121 IDPEQYIATICGNN-TLEMEFKIEVGSGYKIVEKDNSTEHFE----FLQVDSVFMPVKKV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 + +E R E ++L++++ TNG+I +EAI AA L + + E Sbjct: 176 NFRIEETRGENNILNEQLILDIWTNGSISAKEAISNAADNLINLFSPLKTIDG--ESETD 233 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKA--EAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 E E I +++L+L+VR+ NCLK IH + DL+ ++ +L++ N G+KS Sbjct: 234 YETNETSHINQILIEELQLSVRAYNCLKRGCAHIHSVADLLDYSQEDLIEIKNFGQKSAE 293 Query: 302 EIKDVLASRGLSLGMRLEN 320 E+ D L R LG+ L Sbjct: 294 EVIDALQKR---LGINLPK 309 >UniRef50_B1GZB0 DNA-directed RNA polymerase alpha chain n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZB0_UNCTG Length = 323 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 194/320 (60%), Gaps = 5/320 (1%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ E L+ ++D + + + + P ERG+GHT+GN+LRRILLSS+ G A+T V+ Sbjct: 1 MKALDLEKLRKLILDEKTATKFYGHFSAGPFERGYGHTIGNSLRRILLSSLEGAAITSVK 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGD 120 I G HE++ +GV+ED+ +I+LNLK + V++ + L L G VTA DI + Sbjct: 61 IAGAFHEFAVLKGVKEDVAQIVLNLKRIKVKLHSEGPEKLYLKVKKAGTVTAKDIEANAS 120 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 VEI+ P+ I ++ + ++ M ++ G+GYV A + + G +++D+ +SP+ Sbjct: 121 VEIMNPEQEIANIDN-GTTLEMELEASLGKGYVLAE---EMKSNGYSSGTIILDSLFSPI 176 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 ++ Y VE RVEQ + DKL+IE+ T+G++ P++A+ R+A IL + L F D + Sbjct: 177 IKVNYEVENTRVEQTLNYDKLIIEIWTDGSVSPKDALMRSAEILRKILVIFTD-NAFKTE 235 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 EV +K E D IL +PV ++++V++ LK+ I + DLV+ E +LL NL K+S Sbjct: 236 EVSADKEEQDGILGKPVSIMDISVKTLKSLKSAGIETVEDLVKIKEEDLLNFNNLSKRSC 295 Query: 301 TEIKDVLASRGLSLGMRLEN 320 EIK+ + GLSLGM++E+ Sbjct: 296 EEIKNRVKELGLSLGMKIED 315 >UniRef50_D2ISB5 RNA polymerase alpha subunit n=1 Tax=Cryptomonas paramecium RepID=D2ISB5_9CRYP Length = 310 Score = 306 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 8/307 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +K + +S + + T +PL+ G G T+GNALRR+LLS + G A+T + G +HE+ Sbjct: 6 IKYIESETYTNTSYYGRFTFQPLKLGQGLTIGNALRRVLLSDLEGIAITSARVSGSVHEF 65 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 S G +ED+LEILLNLK + ++ KD I L G VTA+D V+ V P Sbjct: 66 SEIPGTREDVLEILLNLKKIVLKGSSKDAGIARLKVQGPCIVTASDFELPSFVKAVDPSQ 125 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I + D N + + + + GRGY + + + L +DA + PV ++ Y +E Sbjct: 126 YIATICDSNV-LEIEVSISAGRGYKLVNRQ----SLDSGKDSLELDAVFMPVNKVNYTIE 180 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 + +KL +E+ TNG++ PEE++ +AAT+L + L + + + +K Sbjct: 181 EINTDFPIAEEKLTLEIWTNGSLTPEESLMQAATVLTDILAPIQRIHLTDEEDFPADKE- 239 Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + P++DL+L+VR+ NCLK I Y DL+ R++ ELL+ N GKK E+ L Sbjct: 240 -PEVKNLPIEDLKLSVRAYNCLKQINIDYTEDLLTRSQEELLEIKNFGKKCCEEVTQALK 298 Query: 309 SR-GLSL 314 + GL+L Sbjct: 299 NIVGLTL 305 >UniRef50_P60315 DNA-directed RNA polymerase subunit alpha, chloroplastic n=2 Tax=Physcomitrella patens RepID=RPOA_PHYPA Length = 450 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 26/330 (7%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K +E + + + P G +T+G ++++ LL + G AV+ V EY+ Sbjct: 128 KCVETQVEGERLHYGRFAVSPFRSGQANTVGVSMQKALLGEVEGAAVSCATFKNVKSEYA 187 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 +GV+E ++IL+NLK L +R + ++ G GPVTA DI +E+ P Sbjct: 188 AMKGVEETPMDILVNLKELVIRSDSDEPQKAIISAIGPGPVTAGDIVLPPSLEVTDPTQH 247 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I +LT E S+ + + V++G GY GR +D+ + PV Y+V + Sbjct: 248 IAYLTKE-VSLDIELDVEKGCGYRMGDHTKS------GDGRFYIDSVFMPVRNANYSVHS 300 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD---------------- 233 E + L +E+ TNG+I PEEA+ AA L + F+ Sbjct: 301 YESEPDVTQEILFLEIWTNGSITPEEALHEAARCLIDLFLPFLHPKKKEVTNSATKMHKS 360 Query: 234 LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + E + + VD L + ++ N LK I+ + DL+ T+ +LL P Sbjct: 361 FTMSQFNSSAEMSAKEVDLRHVYVDQLRIPSKAYNSLKRANINTVSDLLDYTQDDLLSIP 420 Query: 294 NLGKKSLTEIKDVLASRGLSLGMRLENWPP 323 N G+KS+ +I + L + + L P Sbjct: 421 NFGRKSVDDILEALQA---QFSIDLPENNP 447 >UniRef50_Q1IX99 DNA-directed RNA polymerase subunit alpha n=7 Tax=Deinococci RepID=RPOA_DEIGD Length = 331 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 174/319 (54%), Gaps = 32/319 (10%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED++ I+ Sbjct: 16 YGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVIRII 75 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLK L V+ LTL G G V A+ D EIV P I L E+ + M Sbjct: 76 LNLKELVVKFHAPGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-EDGKLVM 134 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 ++V+ G GYVPA + I + VDA +SPV R+AY+VE RV Q+TDLD+L+ Sbjct: 135 EVRVEEGEGYVPADKHATKDR----INSIPVDAVFSPVRRVAYHVENTRVGQQTDLDRLI 190 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ----------------------- 239 + + T+G++ P+EA+ RA IL ++L F ++ V Sbjct: 191 LRIWTDGSVGPQEALDRAVEILRDELTVFGNVETVSAAAPELPSVYTPAAPIVSGYDLPR 250 Query: 240 -PEVKEEKPEFDPILLRP---VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 PE+ + L P ++ L LT R + LK E I + L ++ +L K P + Sbjct: 251 QPELSINPQPYPADLDTPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGI 310 Query: 296 GKKSLTEIKDVLASRGLSL 314 G++SL EIK LA GL+L Sbjct: 311 GERSLDEIKQQLAQFGLAL 329 >UniRef50_C1CXD4 Putative DNA-directed RNA polymerase alpha chain (DNA-dependent RNA polymerase) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CXD4_DEIDV Length = 333 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 175/325 (53%), Gaps = 34/325 (10%) Query: 19 VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDI 78 V + + LEPL RG+G T+GN +RRIL+SS+PG AVT V I+ VLHE+ST GV+ED+ Sbjct: 12 VDGNYGEFVLEPLTRGYGVTIGNPIRRILMSSIPGTAVTSVYIEDVLHEFSTIPGVKEDV 71 Query: 79 LEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENA 138 ++++LNLK L VR LTL G G V A+ D EIV P I L E+ Sbjct: 72 IQLILNLKELVVRFHTSGPKTLTLRAQGEGVVKASAFEVPSDAEIVNPDLTIATLA-EDG 130 Query: 139 SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDL 198 + M ++V+ G GYVPA + I + VDA +SPV R+AY+VE RV Q+TDL Sbjct: 131 KLVMEVRVEEGEGYVPADKHATKDR----INSIPVDAVFSPVRRVAYHVENTRVGQQTDL 186 Query: 199 DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR----------------DVRQPEV 242 D+L++ + T+G+ P++A+ ++ IL ++L F ++ V V Sbjct: 187 DRLILRVWTDGSTGPQDALDKSVEILRDELTVFGNVEALPALVSDVAPVYTPTPVPAHNV 246 Query: 243 KEEKPEFDPILLRP-------------VDDLELTVRSANCLKAEAIHYIGDLVQRTEVEL 289 + P + L P ++ L LT R + LK E I + L ++ +L Sbjct: 247 YDLPPTSGSVNLNPGDYPAELDSPRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDL 306 Query: 290 LKTPNLGKKSLTEIKDVLASRGLSL 314 K P +G++SL EIK LA GL+L Sbjct: 307 KKVPGIGERSLDEIKQQLAQFGLAL 331 >UniRef50_C2KYM7 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KYM7_9FIRM Length = 312 Score = 301 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 192/320 (60%), Gaps = 13/320 (4%) Query: 5 VTEFLKPR-LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +KP V +A+ + L +G LGN+LRRILLSSMPG AV+EV++D Sbjct: 1 MENIMKPVLEVKEFVEEQGYARFVCDSLAKGEATVLGNSLRRILLSSMPGSAVSEVKLDS 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRV--QGKDEVILTLNKSGIGPVTAADITHDGDV 121 V HE+S+ GV+ED+ EI++NLK LA+R G++ V+ ++ G G V A+DI +V Sbjct: 61 VYHEFSSIPGVKEDVSEIIMNLKNLALRYTGSGEEPVMAYVDYMGEGVVKASDIKVSSEV 120 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 EI+ P V+ HL+ ++A I M +KV +G+GY A+TR HS + IG + VDA YSPV+ Sbjct: 121 EIMNPDLVLAHLSGKDAKIYMEMKVSKGKGYDGANTRDHS---DLAIGVIAVDAIYSPVK 177 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 ++ VE + + ++L++++ T+ T+ PEEA+ AA IL L+ F+ + + + Sbjct: 178 KVNVFVEE-----QGNTERLILDVTTDRTMMPEEAVSLAARILQTHLQLFMHMDTSAKEQ 232 Query: 242 VKEEKPEF--DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + L + +D+LEL+VRS NCLK I+ + DL +T +L+K N+G+KS Sbjct: 233 GAAVANQEAGRDELNKSIDELELSVRSYNCLKRAGINTVEDLCAKTMDDLMKVRNMGRKS 292 Query: 300 LTEIKDVLASRGLSLGMRLE 319 L EI + L S GL L + + Sbjct: 293 LDEILNKLESMGLFLSSKAD 312 >UniRef50_A5IMB1 DNA-directed RNA polymerase subunit alpha n=11 Tax=Thermotogaceae RepID=RPOA_THEP1 Length = 336 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 123/337 (36%), Positives = 183/337 (54%), Gaps = 32/337 (9%) Query: 5 VTEFLKPRLVDIEQVSS----THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + EF+ P+ + +E+ +A+ +L PLERG+ T+GNALRR+LLSS+P A+ V Sbjct: 1 MIEFVIPKKLKVEEEREEKDYYYARFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVR 60 Query: 61 I--DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADIT 116 HEY EGV+EDIL+I+LNLK + RV K + + + K G G + A DI Sbjct: 61 FIKPEKYHEYDYIEGVKEDILDIILNLKKVQFRVNVTVKGTIKMEVEKKGPGELVAGDIK 120 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 +E+ P I L + A + + + G+G+VP S E+ +G + +D Sbjct: 121 TPAGIEVANPDLHIATLNSK-ADLFFEVYAEVGKGFVPVSE----REERPDVGWIPIDGV 175 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD--- 233 +SPV ++ + E RV +RTD DKL++E+ T +I PEEA+R+AA IL + + Sbjct: 176 FSPVIKVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVTEGLP 235 Query: 234 ---------------LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYI 278 ++ + +EE E + R +D+LEL+VRS NCLK I I Sbjct: 236 ELKISEEYIITSEEEEAEIPAVDHEEENRENLDVYNRKIDELELSVRSLNCLKRAKIETI 295 Query: 279 GDLVQRTEVELLKTPNLGKKSLTEIKDVLAS-RGLSL 314 GDL+ +TE ELLK N G+KSL E+K+ L GL L Sbjct: 296 GDLLSKTEEELLKIKNFGQKSLDEVKEKLKEKFGLEL 332 >UniRef50_Q4G347 DNA-directed RNA polymerase subunit alpha n=1 Tax=Emiliania huxleyi RepID=RPOA_EMIHU Length = 309 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 170/311 (54%), Gaps = 9/311 (2%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 ++ + + AK +EPL +G G T+GNALRR LLS++PG A+ I GV HE+ Sbjct: 4 VQCLESAQKAATENVAKFCIEPLSKGQGITIGNALRRTLLSNIPGTAIVGTRISGVDHEF 63 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 S GV+ED LEILLNLK L + + +I LN G VTA DI D+E++ PQ Sbjct: 64 SVIPGVKEDALEILLNLKQLVFKGNLNEPIITRLNIQGPCIVTAGDIDIPTDLELIDPQQ 123 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I +TD + + M +++G YV + + P G L VDA ++P++++ + VE Sbjct: 124 YIATITD-FSHLEMEFILEQGESYVLSEKTASNN----PRGFLAVDAVFTPIKKVNFFVE 178 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR---DVRQPEVKEE 245 + ++R + ++L+IE+ETNG+I P EA+ AA L+ + + Sbjct: 179 TSSSKERLEKERLIIEIETNGSILPLEALNLAAERLSSLFKLVNSADLTAEFPTEVENIV 238 Query: 246 KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 + + +++LEL+VR+ NCLK IH +G+L++ ++ LL+ N G+KS E+ + Sbjct: 239 QVSQTDVTGVLIEELELSVRAYNCLKRAQIHTLGELLKYSKENLLEFKNFGQKSANEVCE 298 Query: 306 VLAS-RGLSLG 315 L L+L Sbjct: 299 NLHERFNLTLN 309 >UniRef50_Q3ZZP6 DNA-directed RNA polymerase subunit alpha n=5 Tax=Dehalococcoides RepID=RPOA_DEHSC Length = 330 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 116/322 (36%), Positives = 182/322 (56%), Gaps = 9/322 (2%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +++ P + E + + +EPLE+GFG T+GN+LRRILLS + G A+T V IDG+ Sbjct: 1 MSDLAIPTISCTESDGK-YGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVAITRVRIDGI 59 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIV 124 HE+ +ED L+ LLNLK + V E IL L SG VTAADI D E+V Sbjct: 60 QHEFCALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLRASGSKVVTAADIEPSNDFEVV 119 Query: 125 KPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIA 184 P+ + L ++A +++ ++V+ GRGY P + + PIG + VDA ++P+ ++ Sbjct: 120 NPELYLLTLDSDDAVLNVELEVELGRGYRPPESA-----ENTPIGTIPVDAIFTPIRKVN 174 Query: 185 YNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 + E V + T L++LV+E+ T+GT++P A+ R+A IL +Q + V V Sbjct: 175 FTTEPMHVGRETSLERLVLEVWTDGTVEPATAVSRSADILVKQFASLVSHSKVVAEIEAS 234 Query: 245 EKPEF---DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 301 E ++ + P++ L+L+VR+ NCL+ I +G+++ R ELL N G KSLT Sbjct: 235 EPVKYTIPEEKYNMPIEQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLT 294 Query: 302 EIKDVLASRGLSLGMRLENWPP 323 E++D L + GLSL E + Sbjct: 295 ELEDRLKTIGLSLNPEDELFEE 316 >UniRef50_B0VI04 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) n=2 Tax=Bacteria RepID=B0VI04_9BACT Length = 391 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 178/322 (55%), Gaps = 10/322 (3%) Query: 5 VTEFLKPRLVDIEQ--VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + P VD ++ S T+ K + PLE G+G T+GN LRRILLSS+ G AV V I+ Sbjct: 4 LEPLQMPNEVDYDKASYSRTYGKFEIGPLEPGYGTTIGNTLRRILLSSIQGAAVRFVRIE 63 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G+ HE+ G D ++++L LK L + +EV L L G G +TA+ I V+ Sbjct: 64 GLHHEFCPIPGTNSDYIDLILRLKQLVISSSSVEEVPLVLEHKGKGVITASMIQETAYVK 123 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I+ + + D + + + V GRGYV A + + + +G + VD+ YSPV + Sbjct: 124 IINKDLYLLEVVD-DIDFRLEMIVGIGRGYVSADRQ---NPEGKAVGFIPVDSIYSPVLK 179 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF----VDLRDVR 238 + ++V RV++R + D+L++E+ TNG ++P A+ AA IL + ++ + +R Sbjct: 180 VNFSVSHQRVKERMNFDRLIMEIYTNGAVEPSIALFLAAKILKDMAAKISLFEIEPQYIR 239 Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E+ E E + IL V ++EL+VR+ANCL I IGDLV +TE E+LK N GKK Sbjct: 240 DIELDPELEEKERILKTSVKEIELSVRAANCLAQAKIETIGDLVSKTEAEMLKFRNFGKK 299 Query: 299 SLTEIKDVLASRGLSLGMRLEN 320 SL EI L L LGM +E Sbjct: 300 SLEEIVQKLKKYDLHLGMDVEG 321 >UniRef50_Q85FU3 DNA-directed RNA polymerase subunit alpha n=1 Tax=Cyanidioschyzon merolae RepID=RPOA_CYAME Length = 316 Score = 298 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 18/314 (5%) Query: 5 VTEF-----LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV 59 +++F ++ I +AK L+PL T+GN+LRR+LLS + ++T V Sbjct: 3 MSQFPIEFQIECAASTINHARDIYAKFILQPLSYTQALTMGNSLRRVLLSELESISITAV 62 Query: 60 EIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ-GKDEVILTLNKSGIGPVTAADITHD 118 I G HE +T +GV+ED+L+I+LNLK + R Q K I L G VTAA + Sbjct: 63 RIAGASHELATLKGVREDVLQIMLNLKQIVWRGQLKKQPTITRLKVQGPAIVTAAAFQSE 122 Query: 119 GD--VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 + I+ I + ++ + M ++++ GY A + I L +D Sbjct: 123 ANSSANIIDTCQYIATIDTQDI-LEMECQLEQSSGYRLA-------KPSEMIDWLPIDGV 174 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 + PV+R+ + V+ A V++ L +E+ TNG+I P+EA+ +AA IL L Sbjct: 175 FMPVKRVNFWVDKALVDKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTLEW 234 Query: 237 VRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 + + + +++L+L+VR+ NCLK IH + DL+Q T+ ELL N G Sbjct: 235 KTSHT--KNEQTMAQLSNMLIEELDLSVRAYNCLKRAQIHSVADLMQYTQEELLALKNFG 292 Query: 297 KKSLTEIKDVLASR 310 +KS+ E+ L + Sbjct: 293 QKSVEEVNKALEQK 306 >UniRef50_B7CA10 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA10_9FIRM Length = 318 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 9/312 (2%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K ++ IE+ + K EPLE +G LGNALRR+LLSS+PG A+ + IDGV HE++ Sbjct: 4 KYKISTIEETTK-EGKFLFEPLEYRYGTPLGNALRRVLLSSIPGGAIFSIRIDGVYHEFT 62 Query: 70 TKEGVQEDILEILLNLKGLAVRVQ--GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 +GV+ED+ I+LNLK L + + + L +++ G V A DI V ++ Sbjct: 63 GIKGVKEDVASIILNLKQLILDIDIHDNEVYTLRIDQEGPKTVVAGDIECPTGVTVLNKD 122 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDE-RPIGRLLVDACYSPVERIAYN 186 IC L+ E SI M ++ + GRG+V + ++E +P+G + D+ YSPV+ ++Y Sbjct: 123 LPICTLS-EGGSIHMELQARLGRGFVRSDVNKRMYQNEGQPLGIIYTDSLYSPVKNVSYV 181 Query: 187 VEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD----VRQPEV 242 + E + D L +E+ T+ TI P EA+ AA IL + L + + V++ EV Sbjct: 182 ANPIKSEDGSMYDSLELEITTDETIKPSEALAVAAKILRDHLSILASVDEASLEVKEQEV 241 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTE 302 + + + ++DLEL+VRS NCLK I + +L Q+TE E++ NLGKKSL E Sbjct: 242 EVSEEPVVHTTHKMIEDLELSVRSYNCLKRAGIATVDELTQKTEEEMIHVRNLGKKSLQE 301 Query: 303 IKDVLASRGLSL 314 +KD + GLS Sbjct: 302 VKDKIKELGLSF 313 >UniRef50_Q0ID28 DNA-directed RNA polymerase subunit alpha n=25 Tax=Cyanobacteria RepID=RPOA_SYNS3 Length = 312 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 162/303 (53%), Gaps = 8/303 (2%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 I S + PLERG TLGN+LRR+L+ ++ G AVT V I GV HEY+T Sbjct: 9 IEHQITDDRSQTGVFLIGPLERGQATTLGNSLRRMLMGNLAGTAVTAVRIAGVNHEYATI 68 Query: 72 EGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 GV+ED+L+ILLN K L V + + I L SG V A D+ V++V + I Sbjct: 69 PGVREDVLDILLNCKQLTVTSRTDELEIGRLIVSGPAVVKAKDLQFSSQVQVVDGERPIA 128 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR 191 ++ E S+ + + V+RG GY P ED I L +DA + PV R+ + + Sbjct: 129 TVS-EGHSLELEVHVERGVGYRPVDRH---NEDTSAIDLLQIDAVFMPVHRVNFTTDETA 184 Query: 192 V-EQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD 250 V E + ++L +E+ T+G++ P++AI +AA L E + + V +P ++ PE Sbjct: 185 VAEGGSARERLRMEVVTDGSMTPDDAIAQAANQLIELFQPLATVTMVEEPGIE---PEPS 241 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 P+++L L+VR+ NCLK ++ + DL+ + +LL+ N G KS E+ + L Sbjct: 242 AEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALERI 301 Query: 311 GLS 313 G+S Sbjct: 302 GIS 304 >UniRef50_Q2NIY1 DNA-directed RNA polymerase subunit alpha n=5 Tax=Acholeplasmataceae RepID=RPOA_AYWBP Length = 330 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 112/335 (33%), Positives = 181/335 (54%), Gaps = 15/335 (4%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ +F+KP V+ + K T++PLERG+G T+GNALRR+LLSS+PG A+ V+ Sbjct: 1 MKNL--KFIKPFFVEEIDENPISGKFTIKPLERGYGITVGNALRRVLLSSLPGAAIVNVK 58 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKD---EVILTLNKSGIGPVTAADITH 117 I GV E++T GV ED++ I+LNLK + V + E L L G +TAA Sbjct: 59 IQGVEQEFTTIPGVYEDVMTIILNLKKIVFAVDDESDDFEEKLELIAKGPQRLTAASFEL 118 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 V+I+ P H I L+D + M + +++G GYV A E++ +G + +D+ + Sbjct: 119 PAGVKIINPDHYITTLSD-DVCFHMTVTIKKGIGYVGAKENKVHIENQ--VGVIAIDSLF 175 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 +PV ++Y VE + + D+L IE+ TNG + +EA+ AA+IL + V+L Sbjct: 176 TPVVNVSYQVEK----KLGNKDELTIEITTNGALLAKEALATAASILVDHFNVLVELSQK 231 Query: 238 RQPEV---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 + +K + +L ++ L+L+VR N LK I + LV+ +E E++K + Sbjct: 232 PAHVEFVSESKKEAHNYVLDLEIEQLDLSVRLFNSLKRAGIDTVASLVKLSEKEVVKLKS 291 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE 329 LG+KS E+KD GL L+ S+ ++ Sbjct: 292 LGRKSFQELKDKFLEYGLEFNDYLKEALHHSVEED 326 >UniRef50_Q85FJ1 DNA-directed RNA polymerase subunit alpha n=8 Tax=Embryophyta RepID=RPOA_ADICA Length = 345 Score = 293 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 154/319 (48%), Gaps = 29/319 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K IE + + + P +RG T+G A+RR LL + G ++T GV+HEYS Sbjct: 16 KCLESKIESKRLHYGRFLVSPFKRGQASTVGIAMRRALLQEIEGTSITCARFCGVVHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDE-VILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 T G+QE I ++L+NLK + +R K++ L+ +G VTA D++ VE + Sbjct: 76 TITGLQETIHDVLVNLKEIVLRGDSKEDIQEAFLSVTGPKEVTAGDLSLPPGVEAIDNSQ 135 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 I +T + S+++ +++++ GY + + G+ +DA + PV + Y++ Sbjct: 136 YIATIT-QPISLTIELEIEKDCGYRIENLAKSGK------GQFPIDAVFMPVRNVNYSIH 188 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL-------------- 234 + T + L IE+ TNG++ P EA+R+A+ L + L F+ + Sbjct: 189 LFGSGRAT-QEILFIEIWTNGSLTPHEALRKASEKLMDLLTTFLYVRGGDVSLFENGEDS 247 Query: 235 ------RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 ++ E + R +D LEL R+ NCLK I+ I DL+ + + Sbjct: 248 LDLTKSPSLQPQFGDTNNLEERVLENRFIDQLELPARAFNCLKRAEIYTIADLLNYSRED 307 Query: 289 LLKTPNLGKKSLTEIKDVL 307 L K N G+KS+ ++ + L Sbjct: 308 LSKLKNFGRKSVDQVSEAL 326 >UniRef50_A8SNA8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNA8_9FIRM Length = 313 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 8/300 (2%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + + K + PL+RG+G TLGN++RR+LL S+PG A+ V+IDGV HE++T +G D Sbjct: 15 DLEKNYGKFAIMPLDRGYGTTLGNSMRRVLLGSLPGSAIATVKIDGVGHEFTTIKGSIAD 74 Query: 78 ILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDEN 137 + EIL+N+KG+A++ + VIL LN G VTA DI+ + +VEI H I L +E Sbjct: 75 VPEILINIKGIALKKFNDEPVILELNVKGPKVVTAGDISENQNVEIANKDHYITTLNEEG 134 Query: 138 ASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTD 197 I M + V G+GY + ++ I + VD+ +SPV+++ + V RV Q D Sbjct: 135 -EIRMDLLVLNGKGYRVSDLN----KEYCDINSIAVDSSFSPVKKVNFIVGNTRVGQSID 189 Query: 198 LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDP---ILL 254 DKL IE+ TNGTI P+EA+ A I + L F L D+ + + +L Sbjct: 190 FDKLEIEVWTNGTITPQEALSTGAGIFIDYLSLFRSLPDINLDNSSIKDGKILDANGVLS 249 Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + V++L+L++RS NCLK + + D++ + +L K N GKKS+ E+ D + GL Sbjct: 250 KSVEELDLSLRSFNCLKRANLDTVKDIISQDIEQLKKIKNFGKKSVEEVVDKIHELGLKF 309 >UniRef50_A0T0Z4 DNA-directed RNA polymerase subunit alpha n=12 Tax=Eukaryota RepID=RPOA_THAPS Length = 313 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 88/306 (28%), Positives = 159/306 (51%), Gaps = 8/306 (2%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 ++ + + + + ++ L G G T+GN LRR+LL + G A+T V I GV E Sbjct: 7 LMECIKSEKIESGPMYGQFLIDSLSSGQGITIGNLLRRVLLGDLQGTAITGVRIAGVKDE 66 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 +S GV+EDILEILLNLKG+ ++ + + L G +TA+ I ++EI+ P Sbjct: 67 FSLIPGVREDILEILLNLKGIVLKSKTPNRQFGRLRLQGPAVITASSIQLPPEIEIINPN 126 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 H I ++ + + + K++ G Y A+ + ++ + DA + PV+++ + V Sbjct: 127 HYIATISSSHI-LEIEFKIESGSKYRLANELFSDKFED----FIETDAIFMPVQKVDFKV 181 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL---RDVRQPEVKE 244 E ++L+I++ TNG+I PE+AI + ++ ++ + ++ + K Sbjct: 182 ENVYDNSNNIKERLLIDIWTNGSISPEQAIFSGSNLIINLFKSIGEQKINKEKENIKEKN 241 Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 DP +++L+L+VR NCLK I+ IGDL+ + +LL+ N G+KS E+ Sbjct: 242 HIKPIDPYTHIAIEELQLSVRPYNCLKRAQINTIGDLLDYSPEKLLELKNFGRKSADEVF 301 Query: 305 DVLASR 310 L ++ Sbjct: 302 ATLKNK 307 >UniRef50_Q8RE44 DNA-directed RNA polymerase subunit alpha n=21 Tax=Fusobacteriaceae RepID=RPOA_FUSNN Length = 326 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 106/315 (33%), Positives = 179/315 (56%), Gaps = 14/315 (4%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K + + S+ + +EPL RG+G+TLGNALRR+LLSS+PG A+ + I+GVL E++ Sbjct: 9 KAIKITEVKESNYKGQFIVEPLYRGYGNTLGNALRRVLLSSIPGAAIKGMRIEGVLSEFT 68 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 +GV+E + EI+LN+K + V+ + E ++L+ G V AADI D +EIV P+ V Sbjct: 69 VMDGVKEAVTEIILNVKEIVVKAESSGERRMSLSIKGPKVVKAADIVADIGLEIVNPEQV 128 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 IC +T + ++ + V G G+V + ++ + P+ + VDA Y+P+ +++Y ++ Sbjct: 129 ICTVTT-DRTLDIEFIVDTGEGFVVSEEI---DKKDWPVDYIAVDAIYTPIRKVSYEIQD 184 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 + TD DKL + +ET+G+I+ +A+ A +L L+ F+++ + + + + Sbjct: 185 TMFGRMTDFDKLTLNVETDGSIEIRDALSYAVELLKLHLDPFLEIGNKMENLRDDIEEMI 244 Query: 250 DPIL----------LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 + + +++L+LTVRS NCLK I + L + ELLK NLGKKS Sbjct: 245 EEPMDIQVIDDKSHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKS 304 Query: 300 LTEIKDVLASRGLSL 314 L EI + + G L Sbjct: 305 LDEILEKMKDLGYDL 319 >UniRef50_Q0SN05 DNA-directed RNA polymerase subunit alpha n=17 Tax=Borrelia burgdorferi group RepID=RPOA_BORAP Length = 344 Score = 286 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 181/334 (54%), Gaps = 19/334 (5%) Query: 1 MQGSVTEFLKPRLVDIEQVSST--HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 M+ + +F P ++ + + K T+ P ERGFG T+GN LRR+LLSS+ G A+T Sbjct: 3 MERFLKDFTIPEKIEFLKSQDDGSYGKFTIYPFERGFGVTIGNTLRRVLLSSIEGYAITA 62 Query: 59 VEIDG---------VLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGI- 107 + + V E+ GV ED LE++ N+K + +++ +G+ ++ + SG Sbjct: 63 MRVQSNNKDSSSKVVSSEFDLIPGVSEDTLEVIANIKNIHLKLREGEQRKTISFSVSGKD 122 Query: 108 -GPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDER 166 + A+ D VE+ VI L+ + ++ ++ GRGYV + + Sbjct: 123 TNVLKASHFERD-GVEVFNKDLVIATLS-HDVNLDFEFQINYGRGYVSSEQNS---KYLE 177 Query: 167 PIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAE 226 + + +D+ +SP+E+++Y+VE RV QR+D DKLV+E+ T G I ++AI++AA+I+ E Sbjct: 178 EVNVIALDSIFSPIEKVSYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVRE 237 Query: 227 QLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 L VD D + K E +L ++ L+L+VRS NCL E + +G+L+ + Sbjct: 238 FLFPLVDFEDSVSVSFDKSKSESSNLLDMSIEKLDLSVRSLNCLAKENVRTLGELISKNA 297 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 EL K N GKKSL EI + L S L LGM E+ Sbjct: 298 EELSKARNFGKKSLEEIIEKLGSYQLFLGMSKED 331 >UniRef50_Q5SD25 DNA-directed RNA polymerase subunit alpha n=1 Tax=Huperzia lucidula RepID=RPOA_HUPLU Length = 336 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 157/328 (47%), Gaps = 28/328 (8%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 + +E +++ L PL+ G +T+G +RR LL + G +T + + + HEYS Sbjct: 19 RCVESKVESERLFYSRFILSPLKVGQANTIGLVMRRALLGEIKGTCITCAKFENITHEYS 78 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T +G+QE + +IL+N K + ++ + + ++ G VTA DI VE++ P Sbjct: 79 TMDGIQESVHDILINSKEIVLKSKSSEAQKAFISIVGPRRVTAQDIELPTSVEVIDPMQH 138 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I +T + +++ +K+++ GY + E G VDA ++P+ + Y++ Sbjct: 139 IATIT-KKVKLNIELKIEKDSGYRRQNIV------EYKDGNFTVDAVFTPIRSVNYSIHC 191 Query: 190 ARVEQRTD-LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 ++ + L+ E+ +NG+I PEEAI A+ F+ ++ E+ E Sbjct: 192 FESHDKSIMKEMLLYEIWSNGSITPEEAIYEASRSSINLFLPFLQAEKEKEDFKGEDIHE 251 Query: 249 FDPIL-----------------LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + + ++ LEL+ ++ N LK +H I DL+ ++ +L+K Sbjct: 252 SNALHPSVSIVVDQMAKKVTFQHIFIEQLELSPKAYNFLKKINVHTISDLLDYSQDDLMK 311 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLE 319 N GKKS+ +I + L R GMRL+ Sbjct: 312 MKNFGKKSVEQILEALQKR---FGMRLQ 336 >UniRef50_D0JAU5 DNA-directed RNA polymerase subunit alpha n=2 Tax=Blattabacterium RepID=D0JAU5_BLASB Length = 337 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 110/337 (32%), Positives = 183/337 (54%), Gaps = 14/337 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ +F+KP + + + S L+PLE G+G TLGNALRR+LL S+ G AVT + I G Sbjct: 2 AILDFVKPDRIAMSEFSDNKGIFHLKPLEPGYGITLGNALRRVLLGSLKGFAVTSIRIKG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSG--IGPVTAADI-THDGD 120 V +E+ST EGV ED+ EI+LN K + ++ + T+N S VT + Sbjct: 62 VKYEFSTIEGVVEDVTEIVLNFKKIRLKQKISGIHKETVNASIHHGKQVTGGYLNKFISG 121 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 I+ VIC+ DE+ + + ++ GRGYVPA + ++ IG + +D+ Y+P+ Sbjct: 122 FHILNENLVICN-KDESIPLEISFTIEEGRGYVPAEENK--KNNDHLIGTIPIDSIYTPI 178 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 + Y +E RV Q+TD + L +E++T+G+I P+ A+ A+ IL + F + ++ Sbjct: 179 RNVKYTIENCRVGQKTDFENLSLEIQTDGSICPKSALMEASKILIQYFSIFSHEKIGKKK 238 Query: 241 EVKEEKPE--------FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + + K + +L + D++L+VR+ NCLK+ +I I DLV +LK Sbjct: 239 QEEINKDKKYDEEFLRMRTLLKSKLSDMDLSVRTKNCLKSASIESIADLVSCNRNNMLKM 298 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE 329 N GKKSL E++ + +GL GM + + + + Sbjct: 299 RNFGKKSLDELESKMKEKGLCFGMEISEYRLNNKENN 335 >UniRef50_UPI00016B2694 DNA-directed RNA polymerase subunit alpha n=3 Tax=candidate division TM7 RepID=UPI00016B2694 Length = 294 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 174/296 (58%), Gaps = 5/296 (1%) Query: 5 VTEFLK-PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +T+ + P L +IE SST A T+EPL G+G+TLGN+LRR+L+SS+ G AV +I+G Sbjct: 1 MTKVIHNPALSNIEDYSSTSAAFTVEPLRGGYGNTLGNSLRRVLMSSIHGAAVISFKIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 HE++T G++ED+++I LNLK + +++ D + L L K G G VTA DI DVEI Sbjct: 61 ATHEFTTVPGIKEDVVDISLNLKSVKIKMHTDDPIELRLEKHGAGQVTAGDIQSHADVEI 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + P+ VIC + D +A + + + GRGY+ S E + +DA +SPV R+ Sbjct: 121 INPEQVICTVDDPSAKAVIDLVIDSGRGYLSIED---SSETRLHSDHIALDAVFSPVIRV 177 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ-PEV 242 Y VE+ RV Q T+L+KL++ ++T+G+I P +A AA IL Q A V P + Sbjct: 178 RYKVESTRVGQETNLEKLIVVIDTDGSITPRDAFEEAAAILVNQYTALAGSTVVESAPAL 237 Query: 243 KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 +E+ E L ++DL+LT R+AN L I + DLV TE +L + G K Sbjct: 238 GQEREEESNELNTSIEDLDLTARTANALINNDIRTVQDLVTLTEQDLRELKGFGSK 293 >UniRef50_Q73PK8 DNA-directed RNA polymerase subunit alpha n=4 Tax=Treponema RepID=RPOA_TREDE Length = 351 Score = 283 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 175/330 (53%), Gaps = 19/330 (5%) Query: 2 QGSVTEFLKPR--LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV 59 + + F KP+ ++ + ++ K T P E GFG T+GN LRRILLSS+ G A++ V Sbjct: 4 KNLLKGFKKPKGLEFAQQESTESYGKFTASPFETGFGTTIGNCLRRILLSSIQGYAISAV 63 Query: 60 EI-----DGVLH----EYSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGP 109 I DGV H E+ V ED LEIL LK + +R+ + E G Sbjct: 64 LITSHDADGVPHTISSEFENIPNVSEDTLEILNKLKQIRLRLSDESEQGDFHFEFKGPAS 123 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 +T+ D +G +EI+ + L + A++S ++V GRGYVPA +E+ +G Sbjct: 124 ITSKDFAVEGQLEILGEPFYVMELM-KGANVSFDVQVDFGRGYVPAE---VNEKYIEIVG 179 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +DA Y PV +++Y +E RV QR D DKL++E+ T+ T+ PE+ + AA I + Sbjct: 180 TIPMDAIYGPVLKVSYAIEPCRVGQRNDYDKLILEIWTDSTVRPEDVLGEAAKIAKDHFS 239 Query: 230 AFVDLRDVR---QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 F++ + + E E+ +L ++ L+ +VR+ NCL + I +G+L Q++E Sbjct: 240 IFINFNENDYLGEDEDDNEEAVIKQLLATSINTLDFSVRAKNCLDSAGIKTLGELAQKSE 299 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 E+ N+G+ +L EI LA L LGM Sbjct: 300 DEIESMRNVGRMTLNEIHAKLAEYNLRLGM 329 >UniRef50_Q2SRH9 DNA-directed RNA polymerase subunit alpha n=7 Tax=Mollicutes RepID=RPOA_MYCCT Length = 317 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 184/317 (58%), Gaps = 10/317 (3%) Query: 5 VTEFLKPRLVDIEQ-VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F++P + +++ + K ++ PLERGFG TLGNA+RR LL++ PG +V ++I G Sbjct: 1 MKQFVRPEFILLKEGQDKNYGKFSVSPLERGFGITLGNAIRRTLLAATPGASVYAIKIAG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADITHD 118 HE+++ G+ E++ +I+LN+K L +R+ + V L + GPV A D+ Sbjct: 61 ATHEFTSIPGIIENVTKIILNIKQLVLRIDTSIYSDDEVVQLKIRSDIQGPVYAGDLELP 120 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 178 VE++ +I ++ E + + + + RGY + + E G + +D+ YS Sbjct: 121 AGVEVLNQDLLIATIS-EGGILDLVLYAKNSRGYKTFKDNKNEKNIEP--GMITIDSNYS 177 Query: 179 PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-DV 237 P+ ++AY+V++A++ + DL+KL +E+ T+G+I +AI A+ IL LE F+DL ++ Sbjct: 178 PIIKVAYSVDSAKIGRAIDLEKLELEVTTDGSITAIDAISIASKILVAHLEFFIDLNREI 237 Query: 238 RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 EV D L R V++L+ T RS NCLK I+ + +LV + E E+ NLG+ Sbjct: 238 SVLEVIGVNQTDDKELDRTVEELDFTQRSLNCLKRAGINTLRELVTKNEDEIGSIRNLGR 297 Query: 298 KSLTEIKDVLASRGLSL 314 KSL EIKD +AS GL+ Sbjct: 298 KSLKEIKDKVASLGLAF 314 >UniRef50_B7C9S8 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S8_9FIRM Length = 321 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 165/316 (52%), Gaps = 8/316 (2%) Query: 4 SVTEFLKPRLVD-IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 ++ EF + L + EPLERGFG T+GN + R LL+S+PG + ++ Sbjct: 5 TMQEFERASLHKDFVNEENNTGSYIFEPLERGFGITIGNTICRTLLTSVPGTRIVGFKVS 64 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 G + + +G+ EDI I LNLK + + G+ L ++K G + AADI VE Sbjct: 65 GFDGKATMVDGILEDIYRISLNLKAVQLYNDGEGFQTLHISKKGPATIQAADIICPEAVE 124 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 +V P+ VIC L ++ AS+ M I G GY + + +++DA ++P+ + Sbjct: 125 VVDPEQVICTL-EKGASLEMEIYAVTGTGYKSSIENKV--SYDFGEDVVVLDATFTPIRK 181 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE- 241 Y E ARV DK+ I +ET+GTI P +AI AA + E L+ + + D+ E Sbjct: 182 ADYLSEPARVGLDKKYDKVHINVETDGTITPLQAITMAAKVCMENLDEVLTVSDLELEES 241 Query: 242 ---VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 K + + + ++DL+L+VRS NCLK I + +L Q+TE E++ NLGKK Sbjct: 242 FMVQKPQVEDVKKVNTMMIEDLDLSVRSYNCLKRAGIQTVDELTQKTEDEMMHVKNLGKK 301 Query: 299 SLTEIKDVLASRGLSL 314 SL E+KD + GL Sbjct: 302 SLKEVKDKMYQLGLFF 317 >UniRef50_Q8M9V7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chaetosphaeridium globosum RepID=RPOA_CHAGL Length = 334 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 158/322 (49%), Gaps = 29/322 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 + IE+ + + + + PL +G +T+G ALRR LLS + G +T V+I +HEYS Sbjct: 16 RCLESKIEKSTLHYGRFIISPLWKGQANTIGLALRRTLLSEVEGTCITSVKIKNAIHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 + GVQE + +IL+NLK + + L+ G V A+D+ ++IV P Sbjct: 76 SLSGVQESVHDILINLKKIILSSSFSGIFEGFLSVVGPKTVLASDLNLPSFIKIVNPDQY 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I + ++ + +++I +Q+G+GY + + G LVD + P+ + Y++ + Sbjct: 136 IATV-NKPINFNLQIYIQKGKGYSLKNPISIKQ------GFFLVDPVFIPIRSVNYSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV----------------- 232 E+ T + L++E+ TNG+I+P+EAI+ A+ L V Sbjct: 189 FEDEKAT-KEFLIVEVWTNGSIEPKEAIKEASYNLVNLFTPLVSQEYQQLKNQLFKEDEK 247 Query: 233 ----DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 + + + + + ++ +D LEL+ R+ N LK I+ I DL++ + + Sbjct: 248 NKELNFIETNSNAISDNENSYNLYNQIFLDQLELSSRAYNSLKKNNINTISDLLKYSYED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASR 310 LLK N GKKS ++ + L R Sbjct: 308 LLKIKNFGKKSADQVIEQLKKR 329 >UniRef50_B2S0K5 DNA-directed RNA polymerase alpha chain n=4 Tax=Borrelia RepID=B2S0K5_BORHD Length = 344 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 179/330 (54%), Gaps = 18/330 (5%) Query: 4 SVTEFLKPRLVDIE--QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 + +F P ++ + ++ K + P E+GFG T+GN LRR+LLSS+ G A++ + I Sbjct: 7 LLKDFTIPDRIEFLRGEDDGSYGKFIIYPFEKGFGVTIGNTLRRVLLSSIEGYAISAMRI 66 Query: 62 DG--------VLHEYSTKEGVQEDILEILLNLKGLAVRVQ-GKDEVILTLNKSGI--GPV 110 V E+ GV ED LE++ N+K + +++ G ++++ +G + Sbjct: 67 QSNQGGSLKIVSSEFDLIPGVVEDTLEVIANIKNIHLKLDEGVKSATISVSVNGKDTNVL 126 Query: 111 TAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 A + + VE+ VI L+ E A++ +V GRGYV + H+ + + Sbjct: 127 KAVHLERE-GVEVCNKDLVIATLSSE-ANLDFEFQVDYGRGYVSSE---HNAKYLEEVNT 181 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + +D+ +SP+E++ Y+VE RV QR+D DKLV+E+ T G I ++AI++AA+I+ E L Sbjct: 182 IALDSIFSPIEKVTYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLLP 241 Query: 231 FVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 V+ D V + + IL ++ L L+VRS NCL E + +G+L+ ++ EL Sbjct: 242 LVNFEDKVVHSVDDSEFRDSDILNMNIEKLNLSVRSLNCLTKENVKTLGELISKSAEELS 301 Query: 291 KTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 K N GKKSL EI + L+ GL LGM Sbjct: 302 KARNFGKKSLEEIVEKLSVYGLFLGMSKTE 331 >UniRef50_C7BED9 Alpha subunit of RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BED9_9CHLO Length = 356 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 33/336 (9%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 IE+ + + + L P E G G TL N+LRR LLS + G A+ +EI+G LHEYS Sbjct: 14 CIESRIEENKNFYGRFILGPFEVGQGLTLANSLRRTLLSEISGLAIVAMEIEGALHEYSN 73 Query: 71 KEGVQEDILEILLNLKGLAV--RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 GVQE IL+ILLNLK + + R + V L G G VTA+D+ ++ V P Sbjct: 74 LPGVQESILDILLNLKQIVLVSRFEMDQPVFGFLKVQGPGIVTASDLKLPSSIQCVDPHQ 133 Query: 129 VICHLTDENASISMRIKVQRGRGYV-------------------PASTRIHSEEDERPI- 168 I L+ N +S++ V + + Y+ S + ++ I Sbjct: 134 YIATLSY-NGFLSIKFFVCQKKNYIFLKNASLKKKKIYKLKKNKIQSPILEKKKSNFLIN 192 Query: 169 ---GRLLVDACYSPVERIAYNVEAARVE-QRTDLDKLVIEMETNGTIDPEEAIRRAATIL 224 + +D + V ++ Y +E + +++ +E+ TNG++ P +AI AA + Sbjct: 193 KTSNVVSIDPNFFSVNKVNYLIETCSLFLFEKPKEQIFLEIWTNGSLHPRQAINEAAKRI 252 Query: 225 AEQLEAFVDLRDVRQPEVKEEK------PEFDPILLRPVDDLELTVRSANCLKAEAIHYI 278 F + R + +K K F + +L+L++RS CLK IH I Sbjct: 253 VNIFSPFQETRFYKPGRLKSSKLFSLKRENFKKFTSLDIANLDLSLRSYTCLKRANIHTI 312 Query: 279 GDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +L+Q + ELL N G +SL E+ ++L GL+L Sbjct: 313 DNLLQYSSEELLLLKNFGTRSLEEVLNILQQIGLNL 348 >UniRef50_Q1ACG7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chara vulgaris RepID=RPOA_CHAVU Length = 358 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 149/336 (44%), Gaps = 33/336 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K IE + + + PL++G +TLG LRR LLS + G +T V+ID + HEY Sbjct: 13 KCLESKIESQRIHYGRFAIAPLKKGQANTLGITLRRTLLSDLDGICITSVKIDNIKHEYC 72 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T GV+E I +ILLNLK + + + G +TA+DI + +EI+ + Sbjct: 73 TLTGVRESIQDILLNLKEIVFKGVCDKTQKGFIFVKGPKKITASDIQIEPCIEILDSNQI 132 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I HLT E + + +++ G+ + S+ +DA + P+ + Y++ Sbjct: 133 IAHLT-EPIDFKVELTIEKSMGFRLQNATQISK------DSFSIDAIFMPIRNVNYSIHP 185 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 + L++E+ TNG+I P+EA +A+ + + + D + E + E Sbjct: 186 VEKAGDWKSELLILEIWTNGSITPKEAFHQASEKIMNIFLSLSNSSDNQIQEKSTKNFEE 245 Query: 250 DPIL-----------------------LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 ++ LEL+ R+ NCLK E I + DL+ ++ Sbjct: 246 KEEFIFQNIDGFKQDKETKVQESLGWKKISINQLELSARAYNCLKNEKISTLFDLLNYSQ 305 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWP 322 +LLK N GK+S ++ + L M+L Sbjct: 306 EDLLKIKNFGKRSFEQVVNALEK---HFDMKLSKDS 338 >UniRef50_Q2GEB6 DNA-directed RNA polymerase subunit alpha n=2 Tax=Neorickettsia RepID=RPOA_NEOSM Length = 333 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 116/329 (35%), Positives = 183/329 (55%), Gaps = 12/329 (3%) Query: 2 QGSVTEFLKPRLVDIEQVSSTH-AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 +GS+ + V Q+ + A+ +EPL GFG T+GNA+RR+LLSS+ G A++ V Sbjct: 7 KGSLVDVFSSPSVVFNQIREGYCAEFIVEPLRVGFGLTIGNAMRRVLLSSLSGFAISAVG 66 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVR-VQGKDEVILTLNKSGIGPVTAADITHDG 119 I G+ HE+S GV+ED ++ LNLK + ++ + G L L+ + G V + I+ Sbjct: 67 IKGLTHEFSCIPGVREDFADLALNLKKVVLKSISGATCGNLHLSVTDGGAVFSNMISPSH 126 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 D E+V +IC++ E S+ M +KV G GYV + +++ G + +DA Y+P Sbjct: 127 DFEVVNGDLLICNVA-EGVSLEMEMKVSSGFGYVSS--VSVRKDEYDLEGAVPIDAIYNP 183 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 V + + V+ DKL++ +ETNG +DP+ A+ A+ IL+ Q F+++ D Sbjct: 184 VRAVNFTVKPTSAGSFAGHDKLILYVETNGAMDPKTAVLEASKILSTQARCFLNIADPEH 243 Query: 240 P-------EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 ++ + +L +D L L+ R+ CL E I YI DLV RTE +LLK Sbjct: 244 RVHGVPCGVSTSDRNDASDLLSARIDRLYLSARARKCLNGENIVYIRDLVSRTEADLLKA 303 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLENW 321 PN G++SL E+K L S+GLSLGM L++ Sbjct: 304 PNFGRRSLEEVKKELFSKGLSLGMNLDSH 332 >UniRef50_A9CP51 DNA-directed RNA polymerase alpha chain n=4 Tax=Bryophyta RepID=A9CP51_PHYPA Length = 525 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 30/327 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--GVLHE 67 + E +A+ + P +G T+GNALRR LL + G A+T G++HE Sbjct: 202 RCVETFKENDHRHYARFAVSPFRQGQAITVGNALRRALLGEVQGAAITCATFKDMGIVHE 261 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQ 127 Y +G+QE + +ILLN++ +A+ + ++ G V A DI + + P Sbjct: 262 YQAVDGIQETVQDILLNVRDVAIGSNTHEPQKAFISVMGPRQVIAGDILCPPSLVVPDPS 321 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 I L ++ I+V++ GY + GR +D+ + PV + Y+V Sbjct: 322 QNIA-LVTAAIPFNVEIEVEKDVGYRIVDPGKSTN------GRFYIDSVFMPVVQANYSV 374 Query: 188 EAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKP 247 + VE T + L +E+ TNG+I PEEA+ AA L + L ++ + E++ Sbjct: 375 HSFEVEDVT-REILFLEIYTNGSISPEEALIEAARSLIDLLLPLLESEVIEVTNTTEKEN 433 Query: 248 -------------------EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 + +D L+L R+ NCLK IH + DL+ T+ + Sbjct: 434 GSRNISMLSSFLSSSDQITKEVTYKHVFIDQLKLPARAYNCLKRANIHTVSDLLDYTQDD 493 Query: 289 LLKTPNLGKKSLTEIKDVL-ASRGLSL 314 L++ N GKKS+ E+ + L A +SL Sbjct: 494 LMRIKNFGKKSVEEVLEALRAQFNISL 520 >UniRef50_Q7YJU6 DNA-directed RNA polymerase subunit alpha n=15 Tax=Embryophyta RepID=RPOA_CALFG Length = 340 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 80/332 (24%), Positives = 143/332 (43%), Gaps = 32/332 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K + + + L PL +G T+G A+R+ LL + G +T + + V HEYS Sbjct: 16 KCVESRTDSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T G++E + EIL+NLK + ++ ++ G VTA DI VEIV Sbjct: 76 TIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQH 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I LT E ++ + ++++R RGY + + + G +DA PV +++ + Sbjct: 136 IASLT-EPINLCIELQIERDRGYRMKAPNNYQD------GSYPIDAVSMPVRNANHSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 + L +E+ TNG++ P+EA+ A+ L + F+ + E+ Sbjct: 189 YGSG-NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEQDIHLNLEDNQNR 247 Query: 250 DPILL---------------------RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 + +D EL R+ NCLK IH + DL+ ++ + Sbjct: 248 FTVSPFTLHDRLGNIRKNKKEIALKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L++ + + + +I D+L G+ L Sbjct: 308 LMRIEHFRIEDIKQILDILQK---HFGIDLPK 336 >UniRef50_C6KIM3 DNA-directed RNA polymerase alpha chain n=2 Tax=Pelagophyceae RepID=C6KIM3_9STRA Length = 305 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 155/307 (50%), Gaps = 9/307 (2%) Query: 5 VTEFL-KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F + + ++ L+ L +G G T+GN LRR+LL+ + G A+T V I+G Sbjct: 1 MQQFQFEKIESYSNDLGEQSSRFLLKELTQGQGLTIGNTLRRVLLTELEGTAITAVRING 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 + +E++T GV+ED+LEILLNLK + + ++ G VTAA+I+ + + Sbjct: 61 INNEFATIPGVREDVLEILLNLKQIKFTGLVTEPFFTHVSVQGPQLVTAANISLPDGLSL 120 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERI 183 + H I + E + + +K++ G GY E L +D+ ++PV+ + Sbjct: 121 LNSNHYIAAVA-EQTNFEIELKIESGTGYNFTDE----ENRICSGDFLSLDSIFTPVKNV 175 Query: 184 AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 Y ++ + + L +E+ TNG+I P +A+ +AA +L + V P + Sbjct: 176 NYQIKDSYKIDEKITEILDLEIITNGSITPNDALNKAALVLQTLFGSLVIDELQTNPVL- 234 Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + L +++L+L+VR+ NCLK I I DLVQ + EL N G+KS E+ Sbjct: 235 --PEQTETELDILIEELQLSVRAYNCLKRVNIKTIADLVQYSVKELKDIKNFGQKSANEV 292 Query: 304 KDVLASR 310 + L R Sbjct: 293 VEKLQDR 299 >UniRef50_Q8EUD7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma penetrans RepID=RPOA_MYCPE Length = 331 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 165/330 (50%), Gaps = 24/330 (7%) Query: 5 VTEFLKPRLV--DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +FL+ + + + + +PLERGFGHTLGN+LRR+LLS++ G ++ ++I Sbjct: 1 MEKFLRYNIQIGKDQNKDADYGVFVFKPLERGFGHTLGNSLRRVLLSNIIGHSLFAIKIP 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGIGP 109 V HE+ + +GV+ED+ +I+LNLK L V++ + L ++ S G Sbjct: 61 NVSHEFQSIKGVKEDLTQIILNLKRLVVKIDQEIFGEEEQKETSLEKWPTLKIDFSKGGV 120 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 + A+DI EI+ I + + M + V+ GRG+ ++E I Sbjct: 121 LKASDIETPVGFEIINKDMYIATI-ESGVKFKMELFVKTGRGFTTF---SENKELINAIN 176 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + VD+ +SPV ++ Y V + + D L +E+ TNG + EA+ +A IL E + Sbjct: 177 VIAVDSNFSPVLKVGYKVSDIKTTKNEINDVLELEVATNGAVSAAEAVAMSAKILLEHYK 236 Query: 230 A-----FVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 F + D+R + L +D+LEL+VRS NCLK IH I L + Sbjct: 237 PIVTELFDNYNDLRIINEEATVSSSKSSLAISIDELELSVRSYNCLKRAGIHTITQLTDK 296 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 T+ E+ K NLGKKS EI + R L L Sbjct: 297 TKGEIEKIRNLGKKSFKEIIKKIQDRNLKL 326 >UniRef50_C0QW20 DNA-directed RNA polymerase alpha subunit n=2 Tax=Brachyspira RepID=C0QW20_BRAHW Length = 324 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 181/325 (55%), Gaps = 12/325 (3%) Query: 1 MQGSVTEFLKPRLVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 ++ + P V E+ + T+ K +P ERG+ T+GNALRR+LLSS+PG A+T Sbjct: 3 LKEILESIRHPHRVTFEKKDLTPTYGKFIAQPFERGYAVTVGNALRRVLLSSIPGYAITT 62 Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITH 117 ++IDGV +E+ G++ED + ++++LK + V + D + + K G +TA D+ Sbjct: 63 IKIDGVSNEFENVPGMKEDTIVMIMHLKNVVVSLPSHMDTKTIHMKKEGPCVITAGDLVA 122 Query: 118 -DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 D + ++ P + I + E + M I+++ G YVPA I ED I + +DA Sbjct: 123 DDTEAQVHNPDYYIATIA-EGYTFEMDIQIEGGYSYVPAEMNIELLED---INAIAIDAI 178 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 YSP+ + YNV+ RV QR D KL +E+ET G I P++A+ +AA IL + L+ F+D + Sbjct: 179 YSPIVSVKYNVDPIRVGQRIDYGKLTLEIETKGNIAPDKALSQAAKILRDNLKHFMDPEE 238 Query: 237 VRQPEVKEEKPEFDPILL----RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + K E+ D +L + ++++E +VR+AN L A + + + +T+ +LL+ Sbjct: 239 ANGDDEKIEETPKDSVLDSLKGKHIEEVEFSVRTANFLMASDLKTLDKVAVKTDADLLRL 298 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMR 317 + + EIK+ LA LGMR Sbjct: 299 IGANEMIIEEIKEKLAEYNAHLGMR 323 >UniRef50_C2KUE9 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUE9_9FIRM Length = 314 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 178/315 (56%), Gaps = 11/315 (3%) Query: 5 VTEFLKPRLVDIE-QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +F KP + +E + EPLERG+G TLGN+LRR++LSS+PG A++ ++I+ Sbjct: 1 MFDFTKPNIEILEISEDKRFGRFVCEPLERGYGSTLGNSLRRMMLSSLPGAAISAIKIEN 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGDVE 122 + G+QE E+L NLK +AV + + + + ++++ SG + A D + +++ Sbjct: 61 LSG--DKVSGIQESFPELLTNLKSIAVILPEEVESLEVSVDLSGKSEILAEDFIGESELK 118 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 + P I + + A S+ + + RG+GY S E P +DA Y+PVER Sbjct: 119 LSNPTEHIATV-EAGAQGSISLFISRGQGY---SGEKAEGRVEAPKEYQDIDALYTPVER 174 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR---Q 239 + ++E RV TD D+L +++ TNG++ PE+AI +AA +L + L+ FV L + + Sbjct: 175 VNMSIENTRVGNMTDYDRLTLDVYTNGSMSPEDAISKAAQMLFQHLDLFVALSEEVAATE 234 Query: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299 V + + E ++ +D+LEL+VRS NCLK I+ + +L +T +++K NLG+KS Sbjct: 235 LMVDKPEDEKGKVMEMNIDELELSVRSYNCLKRAGINTVSELTSKTPEDMMKVRNLGRKS 294 Query: 300 LTEIKDVLASRGLSL 314 L E+ L L L Sbjct: 295 LEEVLAKLRDLNLGL 309 >UniRef50_B0B881 DNA-directed RNA polymerase subunit alpha n=18 Tax=Chlamydiales RepID=RPOA_CHLT2 Length = 377 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 177/344 (51%), Gaps = 33/344 (9%) Query: 7 EFLKPRLVDIEQVSSTHA------KVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 +F P V + V + +PLE+G GHTLG+ALRR LL + A+ Sbjct: 12 KFELPESVKMSPVEGAVGGIDKVARFVADPLEKGMGHTLGSALRRALLIGLEAPAIVSFS 71 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG---------KDEVILTLNKS------ 105 + GVLHEY EG+ ED+ I+LNLKG ++ ++ T++ Sbjct: 72 MTGVLHEYMAVEGIIEDVTNIVLNLKGSLLKKYPLQDCEGGRCSQKLRATISVDASDLAA 131 Query: 106 --GIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G VT D+ +G E V P+HVI +T + + ++V GRGY P+ + Sbjct: 132 AGGQKEVTLGDLLQEGTFEAVNPEHVIFTVT-RPMQLEVMLRVAFGRGYSPSERIVL--- 187 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 +ER + +++DA +SPV + Y VE RV Q TD D+LV+++ET+G + P+EA+ A I Sbjct: 188 EERGMNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLVLQVETDGRVAPKEAVAFATQI 247 Query: 224 LAEQLEAFVDLRDVRQPEVK------EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHY 277 L++ F + + R + E K + L+ ++++EL+VRS NCL I Sbjct: 248 LSKHFSVFEKMDEKRIVFEEAISVEKENKDDILHKLVLGINEIELSVRSTNCLSNANIET 307 Query: 278 IGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 IG+LV E LL+ N GKKSL EIK+ L L LGM L + Sbjct: 308 IGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEMKLELGMDLSQF 351 >UniRef50_P56762 DNA-directed RNA polymerase subunit alpha n=266 Tax=Euphyllophyta RepID=RPOA_ARATH Length = 329 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 29/322 (9%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K + + + L PL +G T+G A+RR LL + G +T + + + H+YS Sbjct: 16 KCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYS 75 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 G+QE + EIL+NL + +R + G G +TA DI VEI+ Sbjct: 76 NIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQH 135 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I LT E + + +K++R RGY + +DA + PVE +++ + Sbjct: 136 IATLT-EPIDLCIELKIERNRGYSL------KMSNNFEDRSYPIDAVFMPVENANHSIHS 188 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ---------- 239 + L +E+ TNG++ P+EA+ +A+ L F+ + + Sbjct: 189 YGNG-NEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEEETFYLENNQHQVT 247 Query: 240 -----------PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE 288 K++K + +D LEL R NCLK IH + DL+ ++ + Sbjct: 248 LPFFPFHNRLVNLRKKKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQED 307 Query: 289 LLKTPNLGKKSLTEIKDVLASR 310 L+K + + + +I D+L + Sbjct: 308 LIKIEHFHVEDVKKILDILEKK 329 >UniRef50_P47423 DNA-directed RNA polymerase subunit alpha n=2 Tax=Mycoplasma RepID=RPOA_MYCGE Length = 328 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 24/330 (7%) Query: 5 VTEFLKPRL----VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + +FLK + + + + PLE GFG T+GNA+RR+LLS +PG +V + Sbjct: 1 MEKFLKYEIKVNNNQPTNTNPNYGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIA 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGI 107 I GV E+S EGV ED+ E++LN K L VR+ + +L + Sbjct: 61 ISGVKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLLFEDGEMIEPPLERWPVLKVTAEKK 120 Query: 108 GPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERP 167 G V A D+ E++ + L ++ +++ + V++GRG+ + + E Sbjct: 121 GAVYAKDLECPAGFEVINKDLYLFSL-QKDMKLTVSVYVKQGRGFTSF---LENRELINS 176 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 +G + DA +SPV Y V+ + ++ D L ++ TNG I +A AA IL E Sbjct: 177 LGIIATDANFSPVLHCGYEVQEVKTSKQKLTDHLTFKIATNGAIKAVDAFAMAAKILIEH 236 Query: 228 LEAFVDLRDVRQ---PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQR 284 L V + + + ++ + + +++L+ TVR+ NCLK IH + +L+ + Sbjct: 237 LNPIVSVNESIKNLTIIQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSK 296 Query: 285 TEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + ++ + NLGKKS EI + GL Sbjct: 297 SLTDIREIRNLGKKSEREIIKKVQELGLKF 326 >UniRef50_Q9RDV6 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma gallisepticum RepID=RPOA_MYCGA Length = 325 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 104/323 (32%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 5 VTEFLKPRL-VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 + +FL+ + V E + K ++PLE+GFG TLGNALRR++LS +PG +V ++I G Sbjct: 1 MQQFLRYNINVIKEDNDKNYGKYIVKPLEKGFGITLGNALRRVMLSHLPGSSVFALKIKG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGIGPV 110 + HE+ GV+ED+ +I+LN+K L V + + ++T+ + G + Sbjct: 61 ISHEFGFIPGVKEDVTQIILNIKNLVVWISDNMITDETLSETPIEKWPVMTIRANKAGII 120 Query: 111 TAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 A DI E+ IC L+ E+A +++ I RGRG+ A + + + Sbjct: 121 KAGDIECPLGFEVFNKDLEICTLS-EDAEVAIDIYATRGRGFKTA---AENRSEIGSLSI 176 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + +D+ ++P+ ++ Y+VE + T DKL+IE+ TNG I +AI A+ IL++ L+ Sbjct: 177 IPIDSNFNPIIKVGYHVEEETSDVIT--DKLIIEVGTNGLIKSGDAIAIASKILSDHLKP 234 Query: 231 FVDLRDVRQPEV---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 +D+ ++ E + L P++ L+LTVRS NCLK I + +LV R++ Sbjct: 235 LIDINKSLHDIQVLNEKNVEEKNKKLSIPIEQLDLTVRSYNCLKRHGIQTVEELVTRSKS 294 Query: 288 ELLKTPNLGKKSLTEIKDVLASR 310 E+ NLGKKS+ EI L+ Sbjct: 295 EIENIRNLGKKSVREINKKLSEL 317 >UniRef50_C1KR47 RNA polymerase alpha chain n=2 Tax=Micromonas RepID=C1KR47_9CHLO Length = 352 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 143/342 (41%), Gaps = 41/342 (11%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L+ +A++ L PL G G TLGN RR+LL+ +PG A+T +++ E+ Sbjct: 12 LECVEFRENNPRDHYARLVLGPLAPGQGVTLGNTFRRLLLNDLPGVAITAAKLNETRTEF 71 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKD----EVILTL----------NKSGIGPVTAAD 114 T G++E ++EI LNL+ + D + +T+ + + A D Sbjct: 72 MTLPGIRESVVEIFLNLRDIVFFNTFPDVLAPQGTITISPRPQTDESKSFHTPRVICAGD 131 Query: 115 ITHDGDVEIVKPQHVICHLTDENASISMRIKVQR--------------GRGYVPASTRIH 160 + + V P I L + + + ++ +++ G G+ P+ Sbjct: 132 MQLPEGITCVDPTQPIATLMNGDTAFNLTFILEQSTGYRVWKKPTQSYGTGFYPSPQIES 191 Query: 161 SEEDERPIGRL-LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRR 219 + ++ G +D + PV+ + + V + + + E+ TNG+I P A + Sbjct: 192 VQIEQVKSGVFQPIDGNFMPVKNVNFAVHEV----QPHGEYIHFEITTNGSIHPHNAFKH 247 Query: 220 AATILAEQL-------EAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKA 272 A IL E V + + P V + ++ LEL++R+ NCLK Sbjct: 248 AGAILTEITRATLQDPRPVVGIDEASTP-VDTAVAQKAYFENIAIEQLELSLRAYNCLKR 306 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 I + DL + + LL N G+KS E+ L + G+ L Sbjct: 307 AQILTLADLSRESYSSLLALRNFGQKSAEEVAKALETYGIEL 348 >UniRef50_A8ETK6 DNA-directed RNA polymerase subunit alpha n=3 Tax=Epsilonproteobacteria RepID=RPOA_ARCB4 Length = 332 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 175/331 (52%), Gaps = 17/331 (5%) Query: 5 VTEF----LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + +F P V+IE +S AK++ P E GF TL + LRR+LLSS GCA V+ Sbjct: 1 MKKFAETPFLPTEVEIEAISDNEAKISAYPFEDGFAITLAHPLRRLLLSSSVGCAPIAVK 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEV-ILTLNKSGIGPVTAADITHDG 119 I+G HE+ + G+ ED+ ++NLK + ++ G E ++ + +G + D+ + Sbjct: 61 IEGASHEFDSLRGMLEDVAIFVINLKNIKFKINGDKEQVVVEYSFNGPRDIKGEDLI-NS 119 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 +V++V + + + + +++ + +Q+G GY+P+ D + +DA ++P Sbjct: 120 EVDVVSKDAHLATI-NSDCNLTFSVILQKGIGYMPSEDI----RDIVGADYIPIDAFFTP 174 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 V+++ Y++E VE + +K V ++TNG I P A + A +++ Q+ F + D+ + Sbjct: 175 VKKVVYDIEKMLVEDNPNYEKAVFRVQTNGQISPVTAFKEAVSVMYSQMSVFNKVFDLSE 234 Query: 240 PEVKEEKPEFDPILL--RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 V + E + +DDL L+ RS N L + Y+G+LV +EVE+ NLGK Sbjct: 235 VAVSDSGEEPVELKELVIRIDDLNLSARSFNSLDRAGLKYLGELVLMSEVEVKNIKNLGK 294 Query: 298 KSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 KS EI + L SLG +EN P ++A Sbjct: 295 KSYDEIAEKLE----SLGYPVENTLPENVAS 321 >UniRef50_Q9ZJT5 DNA-directed RNA polymerase subunit alpha n=30 Tax=Epsilonproteobacteria RepID=RPOA_HELPJ Length = 344 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 164/336 (48%), Gaps = 16/336 (4%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ T L P + + + K++L P E G+ TL + +RR+LL S G A ++ Sbjct: 1 MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLK 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAV---------RVQGKDEVILTLNKSGIGPVT 111 I+GV HE+ + GV ED+ ++NLK + V++ + G + Sbjct: 61 IEGVHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGPMELR 120 Query: 112 AADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRL 171 A D+ D +EIV P+ + + +E+A ++ + + +G GYVP+ + + P G + Sbjct: 121 ARDLNSD-HIEIVNPEMPLATI-NEDAQLNFSLIIYKGMGYVPSE----NTRELMPEGYM 174 Query: 172 LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 +D ++P++ + Y +E VE + +K++ ++ET+G IDP +A A ++++QL F Sbjct: 175 PLDGSFTPIKNVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVF 234 Query: 232 VDLRDVRQPEV-KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELL 290 + + + L ++ + L+ R NCL I Y+G+LV +E EL Sbjct: 235 GERPIANTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELK 294 Query: 291 KTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASI 326 N+GKKS EI + L G +G L S+ Sbjct: 295 GVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESL 330 >UniRef50_A7H5U5 DNA-directed RNA polymerase subunit alpha n=19 Tax=Campylobacterales RepID=RPOA_CAMJD Length = 337 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 166/318 (52%), Gaps = 8/318 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ P IE +S T AK++ P E G+G TL + LRR+L +S G A T + Sbjct: 1 MRNITISAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLRRLLYTSTVGYAPTAIH 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDG 119 IDGV HE+ + G+ ED+ ++NLK L +++ ++ I+ + G + D+ +D Sbjct: 61 IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKSDSNKEIVEFSFKGSKEIYGKDLNND- 119 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 VE+V + + +E+A + + V++G GY+P+ D + + +DA ++P Sbjct: 120 QVEVVNKDAYLATI-NEDAELEFTLIVEKGIGYIPSEEIKEFLNDPK---FIALDAFFTP 175 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 V Y++E E D +K+V+ + T+G I P EA + A + +QL F + +VR Sbjct: 176 VREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDKITNVRS 235 Query: 240 --PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + LL+ + DL L+ RS NCL+ + YIG+L + EL NLGK Sbjct: 236 VIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYIGELALMSVSELAGLKNLGK 295 Query: 298 KSLTEIKDVLASRGLSLG 315 KSL EIK+++ + G +G Sbjct: 296 KSLDEIKNIMENIGFPVG 313 >UniRef50_Q9PQN4 DNA-directed RNA polymerase subunit alpha n=15 Tax=Ureaplasma RepID=RPOA_UREPA Length = 327 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 168/331 (50%), Gaps = 22/331 (6%) Query: 5 VTEFLKPRL--VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +FLK +L I V + PLE GFG TLGNALRRI LSS+PG ++ V+ Sbjct: 1 MRKFLKYQLDVPSINSEDKNRTVVKIAPLEIGFGDTLGNALRRICLSSIPGASMFAVKFG 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-------------KDEVILTLNKSGIGP 109 G HE+ EGV+EDI I+LNLK LA+++ + +N G G Sbjct: 61 GYSHEFQPYEGVKEDITHIILNLKNLAIKIDELIYSEDYFNNLLIDKWPKMKINFKGPGV 120 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 +TA DI EIV I +T + + + I + GRG V +T +++ + Sbjct: 121 ITAKDIVCPVGFEIVNQDLYIAEVT-KPIDVEIEIFAKTGRGRVDFNT---NKDFVSTLH 176 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + D+ YSPV AYNVE + + + + L I++ TNGTI EAI AA I+ LE Sbjct: 177 IIATDSNYSPVLHYAYNVEMIKDSKSSMSEILTIDIATNGTISGSEAIAIAAKIMQAHLE 236 Query: 230 AFVDLR---DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 V++ + + E+ E +DDL+LTVR+ N LK I+ +L++ T+ Sbjct: 237 PIVNIDKTINEMIIMREREEEEKRQNASISIDDLDLTVRAYNALKQSGINTTAELIELTK 296 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 +L K NLG+KS+TEI L R L L Sbjct: 297 SQLEKIKNLGRKSVTEIIQKLTERSLELKKD 327 >UniRef50_B3R017 DNA-directed RNA polymerase, alpha chain n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R017_PHYMT Length = 331 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 12/309 (3%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + + ++ LE +G T+GN LRR+LLSS+PG + VEI GV HE+ST GV ED Sbjct: 17 SEDLSFGRFIIQNLEPSYGVTIGNPLRRVLLSSLPGAGIVYVEIKGVDHEFSTIPGVYED 76 Query: 78 ILEILLNLKGLAV---RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 ++ I+LNLK + + + E + L +G VTA+ ++I+ P+ I +L Sbjct: 77 VMSIVLNLKQVVISVDSIDDDFEQEMELFVTGKQKVTASCFEQVEGIKIINPEQEIANLV 136 Query: 135 DENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQ 194 ENAS+ M + ++RG GYV A + + G + +D Y+PV +++Y++E + Sbjct: 137 SENASLKMTVLIKRGIGYVSAEENKIYTK--KKKGLISIDTLYTPVSKVSYDIEK----K 190 Query: 195 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEV---KEEKPEFDP 251 D ++L IE+ TN + ++A+ A+ IL + +L + + K +K + Sbjct: 191 LGDKEELAIEITTNKSTTAKDALTTASKILFDHFSFLANLNEKKDQISFIYKPKKELPNK 250 Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 L +D LEL+VR NCLK I + DLV E E+ K +LG+KS E+K+ G Sbjct: 251 SLELRIDQLELSVRLFNCLKKSGIEKVSDLVLLKEEEVFKLKSLGRKSFNELKEKFKQHG 310 Query: 312 LSLGMRLEN 320 L LE Sbjct: 311 LEFQNDLEK 319 >UniRef50_O98462 DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirogyra maxima RepID=RPOA_SPIMX Length = 344 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 41/325 (12%) Query: 23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEIL 82 + PL G TLG A+RR LL S+ G A+ +I G HEYST EG+QE I +IL Sbjct: 31 YMLFIASPLLAGQATTLGVAIRRTLLESIQGTAIVAAKIYGAAHEYSTLEGIQESIHDIL 90 Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LNLK + ++ + + ++ G VTAADI ++ I P H I +T + + Sbjct: 91 LNLKQVIIKNKICEFQKCLISIIGPKKVTAADIELSQNITISNPYHHIATIT-KPIRFQV 149 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + + +GRGY+ + G VDA ++PV + +++ +Q + L+ Sbjct: 150 ELIINKGRGYLIQDGN------DVQDGYFPVDALFNPVRNVNFSIHNLAEQQ----EALI 199 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEA-----------------------------FVD 233 +E+ TNG I P +A+R+ + L F Sbjct: 200 LEIWTNGAITPLDALRQGSENLIHLFLPPFGLEDDTYMTSLGSQDYNIHIKNSLKEKFEL 259 Query: 234 LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 R + K +F P++ LEL+ R CLK I+ I DL++ ++ +LLK Sbjct: 260 HSIERIEDSHLIKDQFLEYSKTPIELLELSTRPFKCLKNANIYTINDLLKLSQQDLLKIS 319 Query: 294 NLGKKSLTEIKDVLAS-RGLSLGMR 317 N+G S+ +I + L G++L ++ Sbjct: 320 NMGPSSVKQIVEALDKRFGINLKLK 344 >UniRef50_C5F0M8 DNA-directed RNA polymerase subunit alpha n=3 Tax=Helicobacter RepID=C5F0M8_9HELI Length = 329 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 165/325 (50%), Gaps = 9/325 (2%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M+ T P +++ + + ++T P E G+ TL + LRR+LL S G A + Sbjct: 1 MKSIKTSPHIPTKIEVRETGNNKVQITAYPFENGYAITLAHPLRRLLLGSSVGFAPIALR 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDG 119 I GV HE+ + GV ED+ + ++NLK + R+ D V + +G +T AD+ + Sbjct: 61 ISGVAHEFDSVRGVVEDVSQFIVNLKAIRFRIKDNSDNVSVDYKFNGSKVITGADL-SNE 119 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 VE+V P + + +E+A+++ I + +G GYVP+ S P G + +DA ++P Sbjct: 120 LVEVVTPDIHLATI-NEDATLAFSIIIYKGIGYVPSEEIRAS----VPEGFMPLDAYFTP 174 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 V Y E +E + +K++ +++T+G +DP A + A +++ +Q+ F ++ Sbjct: 175 VTSATYTTENMLLEDDPNYEKIIFDIQTDGQVDPLTAFKNALSVMHKQMSIFNSELNIEM 234 Query: 240 PE--VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 PE V EE+ +L + +D L + R NCL I Y+G+LV E ++ NLGK Sbjct: 235 PETTVSEEERPELKVLSQTIDSLNFSARCFNCLDRSGIRYLGELVLLNEDQIKNIKNLGK 294 Query: 298 KSLTEIKDVLASRGLSLGMRLENWP 322 KSL EI L G + + Sbjct: 295 KSLDEITAKLDELGYPVNREIPEDL 319 >UniRef50_A0Q4K8 DNA-directed RNA polymerase subunit alpha 1 n=33 Tax=Francisella RepID=RPOA1_FRATN Length = 323 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 195/324 (60%), Gaps = 15/324 (4%) Query: 2 QGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 S EF+ P + E + + KV L P+E+G H LGN++RR+LLSS+ G ++ +V I Sbjct: 4 NNSKQEFV-PNIQLKEDLGAFSYKVQLSPVEKGMAHILGNSIRRVLLSSLSGASIIKVNI 62 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-DEVILTLNKSGIGPVTAADITHDGD 120 VLHEYST E V+ED++EI+ NLK +A+++ D + L L+ + G V+A D Sbjct: 63 ANVLHEYSTLEDVKEDVVEIVSNLKKVAIKLDTAIDRLDLELSVNKSGVVSAGDFKTTQG 122 Query: 121 VEIVKPQHVICHLTDENA-SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 VEI+ I LT++ A S++ + V R G + A +G + VDA ++P Sbjct: 123 VEIINKDQPIATLTNQRAFSLTATVSVGRNVGILSAIPTELER-----VGDIAVDADFNP 177 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 ++R+A+ V D + L + ++TNGTI+P A+ +A EQ+ FV LR Sbjct: 178 IKRVAFEV-----FDNGDSETLEVFVKTNGTIEPLAAVTKALEYFCEQISVFVSLRVPSN 232 Query: 240 PEVKE--EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 297 + + DPILL+P+DDLELTVRS+NCL+AE I Y+GDLVQ +E +L+K PNLGK Sbjct: 233 GKTGDVLIDSNIDPILLKPIDDLELTVRSSNCLRAENIKYLGDLVQYSESQLMKIPNLGK 292 Query: 298 KSLTEIKDVLASRGLSLGMRLENW 321 KSL EIK +L LSLG++++N+ Sbjct: 293 KSLNEIKQILIDNNLSLGVQIDNF 316 >UniRef50_Q0P3L0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ostreococcus tauri RepID=RPOA_OSTTA Length = 356 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 157/354 (44%), Gaps = 50/354 (14%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 LK ++ + +++ P+ G G T+GN LRRILL+ +PG V EI+GV E+ Sbjct: 8 LKSLQYRQNSLTDCYGRLSFGPVNPGQGLTIGNTLRRILLNDLPGIGVIGAEINGVQSEF 67 Query: 69 STKEGVQEDILEILLNLKGLAVR---------VQGKDEVILTLNK-----SGIGPVTAAD 114 ST G++E ++EI LNL+ L Q K V LN + VTA D Sbjct: 68 STLPGIRESVIEIFLNLRELIFTPTATCAQKVKQTKPFVYAKLNSELKIDNFPYVVTAKD 127 Query: 115 ITHDGDVEIVKPQHVICHLTDENA--SISMRIKVQRGRGYVP--------------ASTR 158 + + E V P I + A + + + + +GRGY + Sbjct: 128 LHIP-EYEFVDPNQQIATILSPTAAENFKLTLLIGQGRGYQSWKKLPGVPQLMDQRFFEQ 186 Query: 159 IHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR 218 S + +DA + P+ ++ + V+ V D + + E+ TNG+I+P +A++ Sbjct: 187 FDSTQTNSKSVTFPIDAIFMPIRQVNFTVQEHSV----DGEYIYFEVWTNGSINPFDAVK 242 Query: 219 RAATI--------LAEQLEAFVDLRDVRQPEVK-------EEKPEFDPILLRPVDDLELT 263 AA + L + V L + + PE + ++ LEL+ Sbjct: 243 SAAKVGMKLMTACLTTLQDQQVYLDESKLPETPNFVQVNYNKMESESNFDQIFIEQLELS 302 Query: 264 VRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 +R+ NCLK I + DL Q++ +L+K N G+KS E++ L++ G+ L Sbjct: 303 LRAYNCLKRANILTLADLSQQSFRDLMKLRNFGQKSADEVRAALSTYGIELKED 356 >UniRef50_C4XFY9 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFY9_MYCFE Length = 339 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 157/329 (47%), Gaps = 19/329 (5%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV 64 +T+ ++ + +S TL+PLERG G TLG ALRRILLS++ A+ ++I+ V Sbjct: 6 MTKLEYQKVTKLNNSTSNVTAFTLQPLERGMGQTLGVALRRILLSNITSLALFAIKIEDV 65 Query: 65 LHEYSTKEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADITH-D 118 HE+ +G ED+ I++NL+ + + + + +TL G VT+ + + Sbjct: 66 NHEFQVVDGCVEDVATIIMNLRKVKFQYNPEFVKDDEIIKVTLKADQPGEVTSRLLEVNN 125 Query: 119 GDVEIVKPQHVICHLTDEN-ASISMRIKVQRGRGYVPASTRI----------HSEEDERP 167 +EI+ I HL+ +++ + ++ GRG++ E + Sbjct: 126 SSIEILNKSLEIAHLSANGKHKLNIELYLRPGRGFISNEENKKLLNNSSITTRMESKIKN 185 Query: 168 IGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 + D+ +SP+E++ Y VE ++L +T+GT+DP+ A+++A IL Sbjct: 186 GIFIATDSNFSPIEKVNYTVEELNSSSNKIEERLTFSFQTDGTVDPKSALQQACEILVGH 245 Query: 228 LEAFVDLRDVRQPEVKEEKPEFDPILLR--PVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 + ++ +++ EE + ++ L L+VRS N LK I + + + Sbjct: 246 FKLIGNVDEMKVNVFAEESEQTQETNDNDVDINSLNLSVRSLNALKRIGKTKISQVAEMS 305 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 EL + NLG+KSL EI+ L G L Sbjct: 306 LEELEQVKNLGRKSLDEIQQRLKEYGYEL 334 >UniRef50_Q32RM8 DNA-directed RNA polymerase subunit alpha n=1 Tax=Zygnema circumcarinatum RepID=RPOA_ZYGCR Length = 356 Score = 249 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 54/352 (15%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYS 69 K +I+ + + + PL G T+G A+RR LL + +T + G HEYS Sbjct: 13 KCLNHEIQNARLHYGRFAVYPLFPGQAITIGTAIRRALLGEVHSTCITSAYVVGASHEYS 72 Query: 70 TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 T +G++E I +ILLNLK + + + L +G G VTA I V++V Sbjct: 73 TLKGIRESIHDILLNLKDIVFKSDTLERQEGILLFNGPGIVTAQHIKLPPVVQVVDNTQY 132 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I L + SI + I ++ + +T ++ GR ++DA PV + Y++ + Sbjct: 133 IARL-EMPTSIEIHITLENTKTCTSLNTMPTTK------GRFILDAALKPVRNMNYSIHS 185 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 + LV+E+ TNG++ P+E I +A+ L + L+ + + Q + K Sbjct: 186 LGEGDMR-QEMLVLEVWTNGSLTPQEVISQASQNLNDLLKPLLKVERYFQAKQNIHKKRM 244 Query: 250 D---------------------------------------------PILLRPVDDLELTV 264 + +DDL+++V Sbjct: 245 FTPTQSENLNMDQIEMIGGNKLIDQPLLPADSHLNSSLSLNIDNLVHLEGISIDDLQISV 304 Query: 265 RSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL-ASRGLSLG 315 R++NCLK I+ I L+ T+ +L + NLGKKS+ +I + S G LG Sbjct: 305 RASNCLKKVGIYTIRQLLSYTQQDLFQIKNLGKKSVEQIVIAIRKSYGHILG 356 >UniRef50_Q4A8J7 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCH7 Length = 332 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 18/319 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 + +EQV+ ++PLERG G+TLGNALRR +LSS+P CAV V+I+G+ HE+ Sbjct: 7 VYYSENLVEQVNEFETSFEIKPLERGLGNTLGNALRRTVLSSIPSCAVFGVKIEGIKHEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNK-----SGIGPVTAADITHDGDVEI 123 + + V ED++ IL NLK + +++ G + A DI ++I Sbjct: 67 TVLDDVIEDVVTILNNLKRVRFFYNPSVFSQNSIHVASFLGQKAGQIYARDIESHSGLKI 126 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEED-------ERPIGRLLVDAC 176 V P I ++ A + + + G+G+V T + + L VD+ Sbjct: 127 VNPDLYIADVSKVGA-LKFELFITNGKGFVDFETNKKYVNEVISRLESQIEGSVLAVDSD 185 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 +SPV Y +KL ++T+G+I ++A+ + A IL L D+ + Sbjct: 186 FSPVLNANYQAVEINSASPIIEEKLNFSIKTDGSIFAKDALSQGAKILIAHLNLLADVEN 245 Query: 237 VRQPEVK-----EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + + E K E +D L+L+VRS N L+ + I D+ + ++ + Sbjct: 246 LNKFSADFFGDQEIKEEPIRRFSNSIDALDLSVRSLNALRRAQYYKISDIEKLSQDDFEN 305 Query: 292 TPNLGKKSLTEIKDVLASR 310 NLG+KS+ EI + L + Sbjct: 306 IKNLGRKSVQEIMEKLQNY 324 >UniRef50_C7LKJ3 DNA-directed RNA polymerase, alpha subunit n=2 Tax=Candidatus Sulcia muelleri RepID=C7LKJ3_SULMS Length = 349 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 180/340 (52%), Gaps = 31/340 (9%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F K + + ++++ +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV Sbjct: 4 LKFTKKENLRVLKLTNYEGHFKIEPLYPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVD 63 Query: 66 HEYSTKEGVQEDILEILLNLKGLAV---------------RVQGKDEVILTLNKSGIGPV 110 HE++T +GV+ED+ EILLNLK + + + E + K+ + Sbjct: 64 HEFATIKGVKEDMTEILLNLKKIRFKKKMEMEEEEEEEEEEEEEEGEKFNIIIKNEKEEI 123 Query: 111 TAADI-THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 TA D+ + EI+ P +I + + +++ I +++G GYVP+ +E+ G Sbjct: 124 TAGDLGEYIHLFEIINPDLIILN-KKKFIYLNITIVIKKGIGYVPSE---ENEKHINTNG 179 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +D+ ++P++++ Y +E V + + ++L E++T+GTI+P++A+ +A+ ++ L+ Sbjct: 180 TISMDSIFTPIKKVKYTIENCSVSKNSTYERLFFEIKTDGTINPKDALIKASNLVIRHLK 239 Query: 230 AFVD--------LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 + + ++ + E + IL ++ L+VR+ NCLK I GDL Sbjct: 240 LLSNKKISLNYNKKYKKKKQTNENYLKLRNILNSSLERKNLSVRTLNCLKKAKIFTWGDL 299 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 ++ LGKKSL E+ ++ + GM LE++ Sbjct: 300 IKSNPT---NFKYLGKKSLEELDLIMKKLTIYYGMNLEDY 336 >UniRef50_C0JX08 Alpha subunit of RNA polymerase n=1 Tax=Pyramimonas parkeae RepID=C0JX08_9CHLO Length = 351 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 82/325 (25%), Positives = 152/325 (46%), Gaps = 34/325 (10%) Query: 15 DIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VL 65 + +Q +A L P G G T+ N LRR LL+++ G +T V+ + + Sbjct: 39 ETDQELLLYALFQLGPFSHGQGLTIANGLRRTLLNNIIGFGITSVKFEPKWVDISKEVFI 98 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADITHDGD 120 HEYST G+ E I EI+ NLK + +R + ++ ++ + + G + A I Sbjct: 99 HEYSTIPGIWESIFEIIENLKKIKIRRENSPFEPFEKQVIRITQDKPGVLRADSIKLPPF 158 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 ++I+ I + N + + I ++ G + + + V P+ Sbjct: 159 LKILNQNQPIVSMMSSNLILDIIITIEAQTGNHLCNNQ-----------FIHVSEVCLPI 207 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF------VDL 234 + + Y ++ + + L E+ T+GTI P+EA+ +AA I + F +++ Sbjct: 208 KWVNYVIKTDPLLGSKSPESLFFEISTDGTITPQEALSKAADICIDLYSCFSTAQKELEV 267 Query: 235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 294 + + + +V EE E +++L L+VR+ NCLK I+ + DL+ +++ +LL N Sbjct: 268 KSIVKEKVTEEVKEEIITNKVTIENLGLSVRAYNCLKRANIYTVTDLLTKSKSDLLAMKN 327 Query: 295 LGKKSLTEIKDVLASRGLSLGMRLE 319 GKKS E+ + L +R LG+ L Sbjct: 328 FGKKSADEVYEALQNR---LGIDLP 349 >UniRef50_Q14GG5 DNA-directed RNA polymerase subunit alpha 2 n=20 Tax=Francisella RepID=RPOA2_FRAT1 Length = 318 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 188/324 (58%), Gaps = 11/324 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-D 62 ++ L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I D Sbjct: 2 ALENLLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKIND 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDV 121 G + E + +I+LN+K L V + +G + +T SG ++ + Sbjct: 62 GKVTSLEDVIPCDETVADIILNVKSLPVTLAEGVETGTITFELSGSEEEIFSEEAKLSEG 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 + + IC + + + KV++G G+ PA +D G L+DA +SPV Sbjct: 122 LAITEEVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVV 173 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV-RQP 240 + ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL +D+ ++ + Sbjct: 174 FCDFEIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNILDIEEINKGI 233 Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 V++ + +PILL+ V++L LT RS+NCLKA I IG+LVQ+TE ELLK PN GKKSL Sbjct: 234 FVEDPTKDINPILLKHVEELNLTARSSNCLKAVNIRLIGELVQKTENELLKAPNFGKKSL 293 Query: 301 TEIKDVLASRGLSLGMRLENWPPA 324 TEIKD L+ GLSLG +ENWP Sbjct: 294 TEIKDKLSELGLSLGTLIENWPQD 317 >UniRef50_A5IYV9 DNA directed RNA polymerase alpha chain (RNAPalpha subunit) (Transcriptase alpha chain) (RNApolymerase alpha subunit) n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IYV9_MYCAP Length = 336 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 84/317 (26%), Positives = 155/317 (48%), Gaps = 21/317 (6%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 + +L+PLERGF +T+ ALRR+LLS++ A+ ++I GV HE+ T G+ ED Sbjct: 18 NNNLNEVTFSLKPLERGFANTVAVALRRVLLSNITSLALFAIKISGVSHEFQTIPGIVED 77 Query: 78 ILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADI-THDGDVEIVKPQHVIC 131 + I++NL+ + + + + + T+ G VT+ I + VEI+ I Sbjct: 78 VTAIIMNLRKVKFKYNPEFVKDGEIIKATIKAEQPGVVTSKSIEISNPSVEIINKSQEIA 137 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHS-----------EEDERPIGRLLVDACYSPV 180 ++ + ++ + + ++ GRG++ + E + + + VD+ +SPV Sbjct: 138 NI--QKGALVIELFLRPGRGFISNESNKKFIQNDSLFASKIESNIKKGLFIAVDSNFSPV 195 Query: 181 ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP 240 E+ +Y V+ ++L+ ++T+GT+D + AI +A IL D+ ++ Sbjct: 196 EKCSYTVKELNTSSNKIEEELLFTIKTDGTVDAKSAINQACKILVAHFMTVGDVDAMKID 255 Query: 241 --EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 E ++ + ++ L L+VRS N LK ++ T EL +T NLG+K Sbjct: 256 VFEEEKINNDEPIENDVDINQLGLSVRSLNALKRIGKTKASEVAAMTWEELEQTKNLGRK 315 Query: 299 SLTEIKDVLASRGLSLG 315 SL EI++ L G +L Sbjct: 316 SLDEIQECLKLNGFTLN 332 >UniRef50_B2Y1Z1 RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI Length = 340 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 79/329 (24%), Positives = 147/329 (44%), Gaps = 23/329 (6%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--VLHE 67 K +E S + + +L PL RG G T+G+ALRR LL + G VT V+ V H Sbjct: 16 KCLEYRVESKRSHYGRFSLSPLLRGQGGTIGSALRRTLLRDVEGTNVTHVKFFNKRVKHL 75 Query: 68 YS--TKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 +S T G++E + +I++NL+ + R + + G VTA DI ++IV Sbjct: 76 FSSSTILGIEESVHDIIMNLREIVFRCELHGIHKAYIYTVGPKNVTAQDIILPPFIQIVD 135 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I +T + + + +K+++ G S ++ R + + Y PV + Y Sbjct: 136 GTQHIASIT-KPIHLHVTLKIEKNWGETTESIHPITKYFTR---YIPTEIFYMPVRSVTY 191 Query: 186 NVEAARVEQRT-DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR--------- 235 NV + E D L+ E+ TNG + P+EA+ A L + + +D+ Sbjct: 192 NVYFYKDEYDIHIYDILIFELWTNGELTPKEALYEACWRLIDLIIPLLDVPLLHVEGSGV 251 Query: 236 --DVRQPEVKEEKPEFDPILLRP--VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + P V + + ++ +D L L + + L+ I+ + D + ++ +L Sbjct: 252 KESIPLPIVSNMNRTQEDLFVQHLFIDQLGLPSKISKSLRESHIYRVSDFMNYSQQDLKN 311 Query: 292 TPNLGKKSLTEIKDVLASR-GLSLGMRLE 319 K+S+ + ++L G++L +R + Sbjct: 312 LEYSKKESIEQTLEILHKYFGINLTLRKD 340 >UniRef50_A6CGQ3 DNA-directed RNA polymerase subunit alpha (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CGQ3_9PLAN Length = 208 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 92/211 (43%), Positives = 130/211 (61%), Gaps = 4/211 (1%) Query: 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDIL 79 +ST+ EP ERGFG T+ N+LRRILLSS+ G +VT V+I GV HE++T GV EDI Sbjct: 2 TSTYGMFVAEPFERGFGATIANSLRRILLSSLEGSSVTRVKIQGVQHEFTTIPGVVEDIT 61 Query: 80 EILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENAS 139 EI LNLK L V+ L + K G VT AD+ D VE++ VI +TD + Sbjct: 62 EICLNLKSLIVKNSSSTSKTLRIEKHERGVVTGADVITDDQVEVINKDLVIATMTD-DVP 120 Query: 140 ISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 ++M + ++ GRGY PAS + + +G + +DA +SPV R+ Y +E RV QRT+ D Sbjct: 121 LNMELTIENGRGYSPASEHAQHDSE---VGVIPLDATFSPVVRVRYKIEDTRVGQRTNYD 177 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 KL++E+ TNGT+ P+ A+ A+ IL + L Sbjct: 178 KLILEIWTNGTVKPDMALVEASKILRKHLNP 208 >UniRef50_Q6KI29 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma mobile RepID=RPOA_MYCMO Length = 333 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 20/329 (6%) Query: 5 VTEFLKPR--LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + +F+K ++++ ++PLE+G TLG A+RR+LLSS+ A V+I Sbjct: 1 MEKFIKINWTENKTKRINDFSTSFIVQPLEKGLATTLGTAIRRVLLSSISSVAPFAVKIK 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNK------SGIGPVTAADIT 116 GV HE+ V ED+ +ILL L+ + + + + K G + A D Sbjct: 61 GVEHEFMAINKVTEDVPQILLRLRDIKIAYNPEIFEDGKIYKLSLKSNKEAGDIYAKDFI 120 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI-------- 168 EIV P +I N + + + V+ GRGYV ++ + Sbjct: 121 LPIGAEIVNPGLLIATTAAANV-LEIDVFVRAGRGYVDFEENKKYIDEIKTNLTSSISNG 179 Query: 169 GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + VD+ +SP+E+++++ +KL +E+ T GTID + AI +AA IL L Sbjct: 180 QYIAVDSNFSPIEKVSFSSSELNTSSVIVQEKLEMEIVTKGTIDAKNAIAQAAKILVAHL 239 Query: 229 EAFVDLRDVRQPEVKEE---KPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 D+ + ++ EE + E + L+L++RS N LK + L + Sbjct: 240 NIIGDVNSLNIKDIFEEGNTEKEHSKTQNILIQSLDLSIRSFNALKRANYTTVQQLEALS 299 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +L NLG+KS+ EI + L + L Sbjct: 300 LDDLKNIKNLGEKSINEIVEKLEKYNVFL 328 >UniRef50_D1GJR1 DNA-directed RNA polymerase alpha chain n=1 Tax=Fucus vesiculosus RepID=D1GJR1_FUCVE Length = 368 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 79/365 (21%), Positives = 154/365 (42%), Gaps = 63/365 (17%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ K +D+ + + LE+ G+T+GN LRR LLS++ G + V G Sbjct: 2 LMSSKCKCVDLDLLNTNEFYGHFVFTALEKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDV 121 + +E++ EGV+ED+ EI+LNLK + + L G +TA + +V Sbjct: 62 INNEFALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNV 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 +I+ P + + ++DE+ I + +K++ G+ Y+ A + + E + + +D+ ++PV Sbjct: 122 KILNPNNHLLTISDESL-IEIEVKIEAGKSYILAKDQ----KLEGALDFIPIDSNFAPVL 176 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA-----FVDLRD 236 ++ + + + + + ++L +E+ TNGT+ P +A+ +A T++ L F L Sbjct: 177 KVNWYIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYMLSPISTIEFSCLDT 236 Query: 237 VRQPEVKEEK-------------------------------------------------- 246 + E+ + Sbjct: 237 YEKEEIHDTNHIKSLTYITDPISRDQNKTVLRSNLIKNKSKFEKINLDKINQVSIDEQKL 296 Query: 247 -PEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 + + +L L+ R N L I++I DL+ L+ LG KS+ EIK+ Sbjct: 297 IKNIVDLEYESLKNLGLSNRIINALNKVNINFISDLIHYPSSSLINIVGLGPKSVEEIKN 356 Query: 306 VLASR 310 L Sbjct: 357 KLNQF 361 >UniRef50_Q32RU7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Staurastrum punctulatum RepID=RPOA_STAPU Length = 383 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 151/388 (38%), Gaps = 83/388 (21%) Query: 2 QGSVTEFL---KPRLVDIEQVSS-THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVT 57 + + +FL K + +++ L PL T+G A+RR LLS + G ++ Sbjct: 4 KTGLIQFLSEWKCVDDQPDHNRRLHYSRFALSPLLVDQAMTIGVAIRRALLSEVEGISII 63 Query: 58 EVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ--------GKDEVILTLNKSGIGP 109 I G +HEYST +GV+E + EILLNLK + ++ E ++ G G Sbjct: 64 SANIVGAVHEYSTLDGVRESVDEILLNLKQIVIKGAKGASITPLDHKEYRASIFAQGPGV 123 Query: 110 VTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG 169 VTA I + V P I L +E + + + +++G T+ + + Sbjct: 124 VTAEHIKFPSSILAVDPDQSIATLLNE-TQLCIELFIRQGIAKQLTRTKKNHQG------ 176 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 +DA ++PV++ +++ + + + L++E+ TN T+ P EA+ +A L Sbjct: 177 -FFIDANFTPVQKANFSIHSVG-DPKGLQQLLLLEIWTNKTLTPAEALYQAHASLLNLFH 234 Query: 230 AFVDLRDVRQPEVK------------------------EEKPEFDPILLRPVD-DLELTV 264 ++ E + + + +++ +V Sbjct: 235 QISPPLLHKELSPSKNILNQNSDSNSLGGSSFGRVVSLETRRDSTQTNNSSIPKEIQPSV 294 Query: 265 R----------------------------------SANCLKAEAIHYIGDLVQRTEVELL 290 R +NCLK I+ I DL+ T+ +LL Sbjct: 295 RLKSYTDTNLSIDKQMNDSVNKENLSIDELELSPRISNCLKKANINTIADLLNYTQEDLL 354 Query: 291 KTPNLGKKSLTEIKDVLASRGLSLGMRL 318 K N G+KS+ ++ VL R M L Sbjct: 355 KIKNFGRKSVEQVSLVLRKR---FNMEL 379 >UniRef50_P38018 DNA-directed RNA polymerase subunit alpha n=4 Tax=Mycoplasma RepID=RPOA_MYCSP Length = 353 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 80/331 (24%), Positives = 160/331 (48%), Gaps = 19/331 (5%) Query: 5 VTEFLK--PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 + + K + + E+V+ + +EPL RG+ +T+G LRR LLSS+ A ++I+ Sbjct: 1 MEKIQKITYKELVAEKVNDFNTTFVIEPLARGYANTMGTVLRRTLLSSITSVAPFAIKIN 60 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-----KDEVILTLNKSGIGPVTAADITH 117 V HE+ T G++ED + ++ N++ + ++ ++ + G + A+DI Sbjct: 61 NVEHEFQTISGLKEDAITLVRNIRNIRFVYNEEIFEKENLAKISFKTNKEGEIFASDIPE 120 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH--------SEEDERPIG 169 +EIV I ++ + S+ + +++GRG++ + E + Sbjct: 121 VSGLEIVNKDQYIANIA-KGGSLEFDLFLRKGRGFIDFEENKNVISQYGSRLESSIKNGQ 179 Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 L +D+ +SPV++ A + E + ++L I++ET+ T+ +EAI +AA I+ + Sbjct: 180 FLAMDSDFSPVKKCAISFEELNSSSKLIEERLKIKIETDCTVSAKEAIEQAAKIIVAHFQ 239 Query: 230 AFVDLRDVRQPEVKEEKPEFDPILL---RPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 ++ + E+ EE E + P+ L L+VRS N L+ + + +++ ++ Sbjct: 240 IIGNINALETIELFEENKEKKEREIKSTTPITKLGLSVRSENALRRAKYNTVEEVLGLSD 299 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 EL NLGKKS+ +I + +G Sbjct: 300 EELSNIKNLGKKSIQDIIEKRNEWKERIGYD 330 >UniRef50_C7BEL8 Alpha subunit of RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEL8_PEDMN Length = 365 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 144/362 (39%), Gaps = 57/362 (15%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ +EQ +S +++ + P + G T+ N+LRR LLS G + VEIDG +HE Sbjct: 6 FVSCLESRMEQETSWYSRFEIGPFQAGQALTVANSLRRTLLSDQQGVFLAAVEIDGAIHE 65 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK-----------DEVILTLNKSGIGPVTAADIT 116 YS EG++E IL+ILLNL+ ++V + + + + G V A D+ Sbjct: 66 YSRLEGLKESILDILLNLRQVSVLLTDDTSKTASEFANQETFVGYFDLQGPMEVKAKDLK 125 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPAST-------------RIHSEE 163 +E P I LT N + R + G + ++ Sbjct: 126 FPKQIECGNPNQHIATLT-RNCTFQGRFLILTNPGLTFKNQSIGDPLLFTKQVAKLEIGN 184 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 L V+ + + R+ Y VE + + +V+E+ TNGTI P++AI A T Sbjct: 185 RLLEKNWLYVNPITNAIRRVNYVVEQFG-DVWEQKEVVVLEVWTNGTIHPKQAIHSACTK 243 Query: 224 LAEQLEAFVDLRDVRQP-------------------------------EVKEEKPEFDPI 252 L+ + + + + + Sbjct: 244 LSTLFSSLSSVNTTAFKFPASVARFKKVKTDSGADGNLTVKPMTEFSGQESPAGDKLTIL 303 Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 + +L+L++++ LK I IG+L+Q + +L + NL + EI+ L GL Sbjct: 304 FDLDIANLQLSLKTYLVLKNAKIQNIGNLLQYNKSDLTRLLNLANSQIEEIETALNVFGL 363 Query: 313 SL 314 + Sbjct: 364 AF 365 >UniRef50_Q3D5K7 DNA-directed RNA polymerase, alpha subunit (Fragment) n=3 Tax=Streptococcus RepID=Q3D5K7_STRAG Length = 212 Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 130/215 (60%), Gaps = 7/215 (3%) Query: 106 GIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDE 165 G +TA DI D D+EIV P H + + E S+ + V + RGYVPA +++D+ Sbjct: 1 GPAEITAGDILTDSDIEIVNPDHYLFTIA-EGHSLKATMTVAKNRGYVPAEG---NKKDD 56 Query: 166 RPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILA 225 P+G L VD+ Y+PV+++ Y VE ARV DKL IE+ TNGTI PE+A+ +A +L Sbjct: 57 APVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTIEIMTNGTIIPEDALGLSARVLI 116 Query: 226 EQLEAFVDLRDVRQPEV---KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV 282 E L F DL +V + + EK + +L R +++L+L+VRS NCLK I+ + DL Sbjct: 117 EHLNLFTDLTEVAKATEVMKETEKVNDEKVLDRTIEELDLSVRSYNCLKRAGINTVXDLT 176 Query: 283 QRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 ++TE E++K NLG+KSL E+K LA GL L Sbjct: 177 EKTEPEMMKVRNLGRKSLEEVKIKLADLGLGLKND 211 >UniRef50_Q98Q08 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma pulmonis RepID=RPOA_MYCPU Length = 333 Score = 213 bits (543), Expect = 5e-54, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 18/324 (5%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 +K + V ++V+ +EPLERGFG T+G ALRR LLSS+ ++I V E+ Sbjct: 7 IKYKEVKTKRVNDYETTFKIEPLERGFGSTIGTALRRTLLSSITSVVPFAIKIKDVDQEF 66 Query: 69 STKEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADITHD--GDVE 122 T + ED+ I+LN+K + + +++ + ++ +T++D+ ++E Sbjct: 67 DTISDIVEDVQMIMLNVKNIHLVYDENIFEDNKIYRGVIETKNEKITSSDLKFPENPEIE 126 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI--------GRLLVD 174 IV I + M + GRGY+ E++ + L +D Sbjct: 127 IVNKDLEIAT-NNGQKPFVMEVYFHVGRGYISFEDNKKLIEEKVALLNSTIKRGKFLAID 185 Query: 175 ACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234 + +SPVE++ V+ ++L IE++T GTID + + +AA IL L+ D+ Sbjct: 186 SDFSPVEKVKVKVQEINSSSLNIEEELEIEIKTKGTIDTKNILSQAAQILIAHLQVIGDV 245 Query: 235 RDVRQPEVKEEKPE---FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 +++ +V E+K + I + L+L+VRS N LK + + D++ TE +L+ Sbjct: 246 KNLDAVDVFEQKKQEKVEPSIHSVDITSLDLSVRSINALKRQGYTKLADILTLTEDDLVA 305 Query: 292 TPNLGKKSLTEIKDVLASRGLSLG 315 NLGKKS+ EI L ++L Sbjct: 306 VKNLGKKSVEEIIQKLKEYNVTLN 329 >UniRef50_B5Y960 RNA-polymerase DNA-directed n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y960_COPPD Length = 319 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 136/288 (47%), Gaps = 5/288 (1%) Query: 24 AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILL 83 AK+++ L G G TLGNALRR+LL + G V ++G+ HE+ EGV ED L I L Sbjct: 25 AKLSVLNLPEGEGITLGNALRRVLLGQIGGTGVLGFRLEGLDHEFMVPEGVVEDGLTIGL 84 Query: 84 NLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMR 143 NLK + + G +L + G + AADI D DVE+ I ++ + I M Sbjct: 85 NLKKVLFKYYGDGVKVLYIKAKGPAEIKAADIVPDADVEVFNLDQTILTVST-DREIYME 143 Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVI 203 I + G GY + + P + +D +SPV R Y+V A V++ + L + Sbjct: 144 IYLTNGVGYRTVEDNK--KLYQFPFRTIYLDTSFSPVRRAEYHVTPAIVDEPGTFESLEL 201 Query: 204 EMETNGTIDPEEAIRRAATILAEQLE-AFVDLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 + TN +DP E IR+AA L+E+ V EE+ D L V+ L L Sbjct: 202 IVYTNLAVDPVEVIRQAANFLSEEFRKVAEAKEAAAGEVVVEEQAISDEKLDASVEMLNL 261 Query: 263 TVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + L+ I+ I DLV E P +G L EI++ LA+ Sbjct: 262 SRAVLTHLEKANINTIRDLVDVLEHN-ESIPGIGAVRLEEIRNKLAAY 308 >UniRef50_D1J731 DNA-directed RNA polymerase subunit alpha n=1 Tax=Ectocarpus siliculosus RepID=D1J731_ECTSI Length = 361 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 81/363 (22%), Positives = 155/363 (42%), Gaps = 60/363 (16%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQ +++ K D+ S + LE+ G T+GN LRR+LLS++ G +T V Sbjct: 1 MQN-MSK-CKCVDSDLLSPSELYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVR 58 Query: 61 IDGVLH-EYSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITH 117 + V H E++ +GV+ED LE++LNLK + ++ + K L G VTA I Sbjct: 59 LPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGSIKF 118 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 ++++ P + + ++D ++ + + +K++ G+ YV A + + E L +D+ + Sbjct: 119 SKGIKVLNPNNYLLTISD-DSFVEIHLKLEHGKAYVLAKDQ----KLEGSTYFLPIDSNF 173 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR-- 235 +PV ++ V+ +L +E+ TNG++ P +A+ +A ++ L + Sbjct: 174 APVLKVNSYVKTLPQHIENTDVELHLEIFTNGSLLPHQALLQAKNMIGYMLSTVNKMEFP 233 Query: 236 ---------------------------------------DVRQPEVKEEKPEF------D 250 + + ++E PE + Sbjct: 234 CLSQVVSEETKSIVKIENIQKKIYKKKEKTVQAKIFQSGEKKAKCIEEPTPEELLLKRVN 293 Query: 251 PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVE---LLKTPNLGKKSLTEIKDVL 307 + +D L+L+ R LK I++ +L+ L+ LG KS+ EI+ L Sbjct: 294 EMDSGSLDCLKLSDRIVKALKKANINFTWELMDYDSSGPPYLIDIKGLGPKSVAEIEKSL 353 Query: 308 ASR 310 Sbjct: 354 RLF 356 >UniRef50_Q9BAC8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus RepID=Q9BAC8_FUCVE Length = 226 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 ++ K +D+ + + L++ G+T+GN LRR LLS++ G + V G Sbjct: 2 LMSSKCKCVDLDLLNTNEFYGHFVFTALKKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAG 61 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDV 121 + +E++ EGV+ED+ EI+LNLK + + L G +TA + +V Sbjct: 62 INNEFALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNV 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 +I+ P + + ++DE+ I + +K++ G+ Y+ A + + E + + +D+ ++PV Sbjct: 122 KILNPNNHLLTISDESL-IEIEVKIEAGKSYILAKDQ----KLEGALDFIPIDSNFAPVL 176 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 ++ + + + + + ++L +E+ TNGT+ P +A+ +A T++ L Sbjct: 177 KVNWYIISLPQDGESINEELHLEIYTNGTLLPHQALLQARTMIGYMLSPI 226 >UniRef50_C7BEY4 Alpha subunit of RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEY4_CHLKE Length = 275 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 45/275 (16%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M +F I+ +A+ L RG T+ NALRR LL +P VT+V Sbjct: 1 MIQIQNKFYSCVETRIQSQGEMYARFHLGTFFRGQALTVANALRRTLLGELPYLIVTKVH 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKD---------EVILTLNKSGIGPVT 111 IDGV+HE+S+ GVQE +L+ILLNLK L + K + + L G VT Sbjct: 61 IDGVVHEFSSIPGVQESVLDILLNLKRLTFTISNKKFNIFSNSWLKTKVFLKIRGPAKVT 120 Query: 112 AADITHDGDVEIVKPQHVICHLTDENASISMRIKV------------------------- 146 AAD+ + V P H I L+ NA ++ +++ Sbjct: 121 AADLKLPPHLACVWPNHYIATLSS-NAELACVLELAVVHPKQKISIAKNEVGSKNKIFGK 179 Query: 147 ------QRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK 200 ++G+G S E + I +D YSP+ ++ Y + ++ + + + Sbjct: 180 VTNDVFEKGKGTESKKILTDSIEKNKKI--FSLDTNYSPIRKVNYVI--YELDSKKNSEY 235 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 LV+E+ T+G+I+P++A+R A L + F + Sbjct: 236 LVLEIVTDGSIEPKQALRFAFKQLTKLFYEFTQIS 270 >UniRef50_Q4A5J0 DNA-directed RNA polymerase subunit alpha n=1 Tax=Mycoplasma synoviae 53 RepID=RPOA_MYCS5 Length = 333 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 149/330 (45%), Gaps = 24/330 (7%) Query: 5 VTEFLKPRLVDIE----QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 + + K + I Q +S + ++ LERGFG+TL ALRRILLS++ G A V Sbjct: 1 MEKLTKIKHRIIPAKDSQNNSYKKVLKIKGLERGFGNTLAVALRRILLSNITGIAPFCVR 60 Query: 61 IDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADI 115 I+GV HE++ E V EDI+ IL NLK + + + L+LN + +T+ + Sbjct: 61 IEGVEHEFTALEKVSEDIVTILSNLKKVVLNYDEDYVKDNQIIKLSLNANEDNRITSNHL 120 Query: 116 THD--GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIG---- 169 T VE+ I L+ + + + ++ GRGYV E++ Sbjct: 121 TVTNAPRVEVQNKDVEIATLSKPGV-LKLEMFLRAGRGYVDFEDNKKFIEEKEKELKELS 179 Query: 170 ------RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 + +D+ +SPV +A+ V ++L +E+ET + PE AI+ A I Sbjct: 180 SLSKGAFIAMDSVFSPVVNVAWKVTELNTASLKIEEQLELELETKLGVTPESAIKLACKI 239 Query: 224 LAEQLEAFVDLRDVRQPEVKEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 L + DL D+ E+ + + + + L L++RS N L I + +L Sbjct: 240 LVAHFQTIGDLTDLDSDEIFQSEKQSLEKEEDDMEIRLLNLSMRSQNALAKSGIKTLNEL 299 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 +L + NLG+KS EI L G Sbjct: 300 ASYPIEKLKEIKNLGEKSREEIIRKLNEYG 329 >UniRef50_D0EVR6 RNA polymerase alpha subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVR6_9CHLO Length = 363 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 128/312 (41%), Gaps = 40/312 (12%) Query: 7 EFLKPRLVDIEQVS-----STHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 I++ + +A L + G T+ NALRR LL+ C++T V I Sbjct: 14 SIFSCLETRIDENTVDHTPQLYACFQLGLFPKNQGLTIANALRRTLLTESTECSITGVLI 73 Query: 62 DGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDG 119 + + HEYS +G++E + +IL+NLK + + L++ G + A ++ Sbjct: 74 EDIKHEYSNLKGIKETVFDILMNLKKIIFFSGQSFFKTQVSFLSEKGPIVLKAKNLKLPS 133 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQR-----------------GRGYVPASTRIHSE 162 + + P I L + N+ I+M I + + + P + + Sbjct: 134 FLFCINPDQYITTL-ETNSKINMTIFIDQSTPKNFSYFTHCYYSNFSNNFFPFKLKKNFT 192 Query: 163 EDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAAT 222 ++++ L +D + P+ + Y ++ + + + L E+ TNG++ P +++A Sbjct: 193 QNQQ-SNFLFLDTQFCPISNLNYKIKK----KESQKEILFFEIWTNGSVHPNFILKKAIK 247 Query: 223 ILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRP----------VDDLELTVRSANCLKA 272 L L F LR+ + E + I+ + + + +++ + LK Sbjct: 248 NLLLNLIPFHSLRNSKIEFEDYENKKIQKIVSQKKFIQKLIKLDLTNFPISLETYQSLKK 307 Query: 273 EAIHYIGDLVQR 284 I IGDL + Sbjct: 308 LNILTIGDLYRL 319 >UniRef50_P56298 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlorella vulgaris RepID=RPOA_CHLVU Length = 278 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 45/270 (16%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ ++ S +A+ + RG T GN++RR LLS MPG +T+V I G HE Sbjct: 8 FVSCIESRVQDQGSLYARFHIGTFFRGQALTFGNSIRRALLSEMPGFLMTDVRIQGATHE 67 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEV-------ILTLNKSGIGPVTAADITHDGD 120 ++ V+E +LEILLNLK + L +G G V AADI Sbjct: 68 FAVLPDVEETVLEILLNLKKTVFVPRIPKNQKFETFQGFGFLKNNGPGKVRAADIRLPET 127 Query: 121 VEIVKPQHVICHLTDENASISMRI--------KVQRGRGYVPASTRIHSEEDERPI---- 168 V+ V P+ I LT A +S+R ++++ G + T ++ ++ + Sbjct: 128 VQCVSPEVHIATLTS-GAELSLRFNLQFRNFSQLEKREGTFKSKTVAQAKTEDGNVQDTT 186 Query: 169 -----------------------GRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 +L +D PV+++ Y +++ + + +++E+ Sbjct: 187 NELPTLEKNSLFFQQLQNKRNSKDQLFLDTVPMPVQKVNYVIKSLNA--KNGSEYIILEI 244 Query: 206 ETNGTIDPEEAIRRAATILAEQLEAFVDLR 235 T+G++ P+E++ A L + F ++ Sbjct: 245 WTDGSLYPQESVEFALRNLTDLFFQFANIS 274 >UniRef50_B2XTD4 DNA-directed RNA polymerase alpha subunit n=2 Tax=Heterosigma akashiwo RepID=B2XTD4_HETA2 Length = 402 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 15/231 (6%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 D + + + K + L G G T+G+ALRR+LL+ +PG A+ + I + E+S+ Sbjct: 8 ESDQNEYNEQYGKFLINSLHPGQGTTVGSALRRVLLTDLPGLAIVGLRIANINTEFSSLP 67 Query: 73 GVQEDILEILLNLKGLAVRVQ---GKDEVILTLNKSGIGPVTAADITH--DGDVEIVKPQ 127 GV+EDILEI+LN+K + + + K V+ L G G VTAA I D +++I+ P Sbjct: 68 GVREDILEIILNVKDIVIEGEFNSSKPWVLGRLKLKGPGVVTAALIEFEEDANIQIINPS 127 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNV 187 I + + N+SI M VQ G+ Y L +DA + PV ++A+ V Sbjct: 128 QYIATI-EVNSSIEMEFLVQTGKNYRLVE---SENSITYSTDFLQIDAIFMPVTKVAFEV 183 Query: 188 EAARVE------QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + + D + L +E+ TNG+I P +A+ +A+IL + Sbjct: 184 TSTKTNALENNSSIQDNENLTLEIWTNGSISPIKALVFSASILENLATQLL 234 Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%) Query: 239 QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 298 + + + + P+++L L+VR+ N LK IH + DLVQ + +L N GKK Sbjct: 325 EEKRENVTSNERNLSQMPIEELILSVRAYNGLKRANIHSVSDLVQYSIKDLKDIKNFGKK 384 Query: 299 SLTEIKDVLASR 310 SL E+ L + Sbjct: 385 SLDEVVASLKNL 396 >UniRef50_A8Z691 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z691_SULMW Length = 239 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 141/240 (58%), Gaps = 10/240 (4%) Query: 6 TEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVL 65 +F + + + + +++ +EPL G+G T+GN LRR+LLSS+ G A++ V+I+GV Sbjct: 4 LKFKQSKNLRVLKLTPEEGLFKIEPLFPGWGVTIGNTLRRVLLSSLEGYAISSVKIEGVN 63 Query: 66 HEYSTKEGVQEDILEILLNLKGLAVRVQGKD-----EVILTLNKSGIGPVTAADI-THDG 119 HE+ST +GV ED+ EI+LNLK + + K EV + + +TA D+ + Sbjct: 64 HEFSTIKGVIEDMTEIILNLKKVRFKKNKKKENFESEVFNMIISNDKEEITAGDLGKYIN 123 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSP 179 +I+ P +I + + S+ + I +++G GYVP+ ++E+ G + +D+ ++P Sbjct: 124 KFDILNPDLIILN-KQKLISLDISIVIKKGIGYVPSE---ENKENLIGSGSIPMDSIFTP 179 Query: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 ++ + Y ++ + + ++ + L++E++T+G+I+P +A+ A+ IL + L+ F+ ++ Sbjct: 180 IKNVKYKIDNCSINKNSNYESLLLEIKTDGSINPRDALTNASNILIQHLKMFIYETRKKK 239 >UniRef50_B2X253 RNA polymerase alpha subunit n=1 Tax=Floydiella terrestris RepID=B2X253_9CHLO Length = 316 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 109/290 (37%), Gaps = 63/290 (21%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 + E + + + + P E G T+ NALRR LLS +PG +T VEI+GV HEYST Sbjct: 27 IKEEKENNQTFYGRFYIGPFEIGQSLTMANALRRSLLSEVPGLGLTSVEIEGVAHEYSTI 86 Query: 72 EGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV 129 GVQE + +ILLN+K + + K I SG + A D+ ++ V P Sbjct: 87 PGVQETVFDILLNIKNIVFKSTTYLKKAEIGYCRASGPKTLRAKDLLLPAHIQCVNPDQY 146 Query: 130 ICHLTDE---NASISM---------------RIKV---------QRGRGYVPASTRIHSE 162 I L + N + + + V + +G Sbjct: 147 IATLKSDGTLNMKLKIRQGTHYLVNTPFEQSELLVAKQEKSLDQTKKKGQSMLKQNKSDL 206 Query: 163 ED----------------------------------ERPIGRLLVDACYSPVERIAYNVE 188 E+ R LL+D + PV + Y +E Sbjct: 207 EEKLQVFSKTLKTKKNENKAFKNVLNIQKEKSLVVPTRKSKPLLLDPVFMPVTKANYVLE 266 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 + + +V+E+ TNG+I P A++ A L L + + ++ Sbjct: 267 LDERVHNSPKELIVLEIWTNGSISPHGALQTAIKKLVRLLGNVKNAKMLK 316 >UniRef50_A6Q046 DNA-directed RNA polymerase alpha chain (Fragment) n=5 Tax=Leuconostocaceae RepID=A6Q046_LEULA Length = 190 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 2/180 (1%) Query: 74 VQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHL 133 +ED+ +I+LNLK + + + DE L ++ G VTAAD+ DVE++ P I + Sbjct: 5 CREDVTQIILNLKKVVLAIDSDDERSLEIDVQGPAEVTAADLQAGADVEVLNPDLHIATV 64 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 S+ M + +GRGY A +E PIG L VD+ Y+P+ER+ Y+VE RV Sbjct: 65 A-AGKSLHMTVTAVKGRGYSSADENKQL-REEMPIGVLAVDSIYTPIERVNYHVENTRVG 122 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 R D DKL ++ TNG+I P +A+ A ILAE L F+D+ V + E + Sbjct: 123 ARDDYDKLTFDIWTNGSIKPSDALSLGAKILAEHLNLFMDISPVAAEANVMVEAEPVAVS 182 >UniRef50_B2X1Z0 Alpha subunit of RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z0_OEDCA Length = 442 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 137/330 (41%), Gaps = 68/330 (20%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 L R + + + + + + + P G G T+ NALRR LLS + AVT ++I V+H+Y Sbjct: 95 LSCRQIVKKNLRNIYGQFYIGPFFIGQGLTIANALRRTLLSELSSLAVTSIQIQDVVHQY 154 Query: 69 STKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVKP 126 T +G+QE + ++LLN+K + ++ + I L G + A D+ ++ V P Sbjct: 155 QTIQGLQESVFDLLLNMKDIVLKSKTTIPVPQIGYLQVQGPCIIKAKDLLLPPFIQCVDP 214 Query: 127 QHVICHLTDENASISMRIKVQRGRGYV---------------------PASTRIHSEEDE 165 + I L+ E+ ++M+ +++G+ + T +HS ++ Sbjct: 215 EQYIATLS-EDGILNMKFVIRQGKHSLTHVTPGYDSFTQKYDQHSYNSTCDTNVHSNKNR 273 Query: 166 RPIGR-------LLVDACYSPVERIAYNVEAARVEQ-RTDLDKLVIE------------- 204 + L++DA ++PV ++ Y +E +Q + D + +E Sbjct: 274 NSLSLLNTYSKHLIIDASFNPVIKVNYIIEVLDFDQLFFEKDSVKLESNDSNNFYCNEEK 333 Query: 205 -----------METNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE--FDP 251 + TNG+I P A++ + L F+ ++ + ++ E + Sbjct: 334 TLIKKEIIILEIWTNGSISPITALKVSIQKLI---SVFLKIQKSKILNIQLIDSEIFYRD 390 Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 I + + + LK + + D Sbjct: 391 IFEKLTNQFYI-------LKFKQCQTLSDF 413 >UniRef50_B3L930 DNA-directed RNA polymerase, alpha subunit,truncated, putative n=6 Tax=Plasmodium RepID=B3L930_PLAKH Length = 805 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 106/274 (38%), Gaps = 26/274 (9%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G L+ + + + G A+ +++ ++E + + Sbjct: 404 IIKYPQNGRLYQKFYIGPLNITDGHTFGTLLKYVCQTQVYGYAIVAIKVHN-MNEDTRID 462 Query: 73 GVQEDILEILLNLKGLAVRVQGKD-EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 VQED+LEI LNL + + + + E + L G V A I +++V + IC Sbjct: 463 NVQEDLLEIALNLSDVCIYSKEINIETNVRLIFKGPLMVVAGMIPLPSHLQVVNKEQYIC 522 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSE---------------EDERPIGRLLVDAC 176 L E+ + + IK++ G+G+ + + ++ + + A Sbjct: 523 TL-KEDGYLDISIKIEYGKGHWLTYEKGLYKREVGSDNECMKKRQVKEVVEKNYMPISAS 581 Query: 177 YSPVERIAYNVEAA--------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + + V R E LV+E+ ++ + P+ + + + L Sbjct: 582 FGSCRMVRMAVHKIATKYWCEDRCEFTDPKQMLVMEIWSDCRMLPKNVLLYGIKNIKKIL 641 Query: 229 EAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 F ++ + + E L +D + Sbjct: 642 RKFREMIISDTDFPSDVEDEEIKKLWPAIDRYKF 675 >UniRef50_B9VL93 RNA polymerase alpha subunit n=1 Tax=Caulerpa filiformis RepID=B9VL93_9CHLO Length = 301 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 18/235 (7%) Query: 11 PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYST 70 IE+ + + P + G T N+LRR LL ++I GV HEYS+ Sbjct: 5 CISSKIEKTGQFYGCFKIGPFQTHSGMTFANSLRRTLLEDNSRYIFDTIQISGVEHEYSS 64 Query: 71 KEGVQEDILEILLNLKGLAVRVQGK--------DEVILTLNKSGIGPVTAADITHDGDVE 122 GV+E +++I+ NL+ L V K I LN +G G + A I D Sbjct: 65 LIGVRESVIDIIFNLQKLIFEVSDKVHLVGKDPKPQIAFLNFTGPGILRAQHIHLPKDFH 124 Query: 123 IVKPQHVICHLTDENASISMRIKVQ---RGRGYVPASTRIHSEEDERPI----GRLLVDA 175 V P I L + + ++ ++ + Y ++ S P L +D+ Sbjct: 125 FVYPDQYIATL-EVDGKLNFKLFFSPKIFQKKYKSLHSKSGSGRQMPPSVLLENYLFLDS 183 Query: 176 CYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + +ER+ Y +++ Q + ++ E+ TNG+I P++AI + + Sbjct: 184 DFCSIERVNYTIQS--GNQNPKEEFILFEIWTNGSIHPQKAIYQGINEILLDFFP 236 >UniRef50_Q20F02 DNA-directed RNA polymerase subunit alpha n=1 Tax=Oltmannsiellopsis viridis RepID=RPOA_OLTVI Length = 508 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 L IE S +++ L P + G G T+GNA RR LLS + G +T +EIDGV HE Sbjct: 5 LLSCVESRIEHNRSFYSRFQLGPFDLGQGLTVGNAFRRTLLSELSGVGITLIEIDGVCHE 64 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L+ILLNLK L + + LN +G G VTA D+ V V Sbjct: 65 YSTLPGVRESVLDILLNLKQLVLTSDTTFTVPQVGYLNFTGPGVVTAKDLKLPVSVYCVD 124 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI 168 P I L+ +A+++ + V +G+ Y+ + E ++ I Sbjct: 125 PDQPIATLS-ADATLNFKFLVCQGKNYIIQTPVDKFHEYQKKI 166 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 49/189 (25%) Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 L VD + P++++ Y ++ E D + +V+E+ TNG+I P +A+ AA L Sbjct: 318 LPVDTLFMPIKKVNYMIDIDPAE--PDRESVVLEIWTNGSIHPRQAVHEAAKQLIHLFSP 375 Query: 231 FVDLR------------------------------------------DVRQPEVKEEKPE 248 F+ + + ++K Sbjct: 376 FLQTHLVPTTLQSTPYSKAASKTQEFSLNETSTEKVKDELGKVAFGSENNTAALNQQKNL 435 Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLV-----QRTEVELLKTPNLGKKSLTEI 303 I + +L ++R+ LK E I+ + +LV Q+TE + N+ L EI Sbjct: 436 VTAIQTLDIANLNFSLRTFTFLKKENINTVSELVEFWTRQKTEAKDSIQSNVQSSVLLEI 495 Query: 304 KDVLASRGL 312 + L + G+ Sbjct: 496 SNNLKNFGV 504 >UniRef50_Q05FK5 DNA-directed RNA polymerase subunit alpha n=1 Tax=Candidatus Carsonella ruddii PV RepID=RPOA_CARRP Length = 322 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 150/323 (46%), Gaps = 11/323 (3%) Query: 3 GSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 62 V + + I+ +S + + +E F +LGN ++R++ + + ++I Sbjct: 2 NFVNNLFTLKKISIKNISFFRSIIRIETFNNSFCDSLGNFIKRVIFLTTNSYKIIYLKIY 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVE 122 + E+ G+ E+ IL NL + +++ + L + K G +TA DI D ++ Sbjct: 62 KIKSEFYDLPGIIENTQTILKNLDNIIIKINNDNVANLIIKKKGPCIITAKDIFSDKNIT 121 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I P +I ++++ N +K + + ++ SP+ Sbjct: 122 IFNPNKIIANVSN-NIVFYCIMKCVNSLFKNYTDEFFQFK--IFKENIIFLNNFKSPIIS 178 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA---FVDLRDVRQ 239 + Y + ++ KL ++ETNG+I P + + + + + F+ + ++ Sbjct: 179 LNYYINKKIFNKKLK--KLFFDIETNGSIKPVDCFKNCIFYIKKYFDLIFSFIGFKKYKK 236 Query: 240 PEVKEEKP---EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLG 296 V+++ + + + L +++L+L++RS NCLK I IGDL++ ++ L+ PNLG Sbjct: 237 INVEKKNNLNLKINSVYLNSINNLKLSIRSLNCLKNNNIFLIGDLIKISKNNLINIPNLG 296 Query: 297 KKSLTEIKDVLASRGLSLGMRLE 319 KKS EI + L + GL+L ++E Sbjct: 297 KKSYNEILNSLKNFGLNLNSKIE 319 >UniRef50_B7T1W3 RNA polyperase alpha-chain n=1 Tax=Vaucheria litorea RepID=B7T1W3_VAULI Length = 230 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 115/219 (52%), Gaps = 9/219 (4%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQ 75 +E K ++PL G G ++GN RRILL+ MP +T V G+ +E+ST +GV+ Sbjct: 11 LEVPDENFGKYIIKPLNLGMGVSIGNLFRRILLTQMPRTNITGVRFAGITNEFSTIKGVR 70 Query: 76 EDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADIT--HDGDVEIVKPQHVICHL 133 ED+LEILLNLK + + +++ + + +G +T++ + ++ +V P I + Sbjct: 71 EDVLEILLNLKQIIFKGFKEEKTYVRIKITGPTVITSSCLQSALPDEITLVNPSQYIATI 130 Query: 134 TDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE 193 T+ ++++ +K++ + A+ + E + L VD SP+ +I ++V + Sbjct: 131 TN-DSTLEFELKIESEKKSNLANNQAIFESSD----FLEVDKITSPIRQILFDV--YKKS 183 Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + ++LV+++ T+G+I P +A+ + ++ Sbjct: 184 ETETQEELVLQIWTDGSITPIDALITSVKLVQNLFTQIT 222 >UniRef50_Q06SF7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Stigeoclonium helveticum RepID=RPOA_STIHE Length = 517 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 + R +E S + + + PLE G G TL NALRR LLS + G A+T VEI+GV HE Sbjct: 20 LVSCRESIMENKKSFYGRFYIGPLEVGQGITLANALRRALLSELNGLAITTVEIEGVSHE 79 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQG--KDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L+ILLNLK + ++ + K + G G + A DI ++ V Sbjct: 80 YSTLMGVRESVLDILLNLKQIVLKSKKSVKRAQTAYIYCQGPGVIRAGDIILPSSIQCVD 139 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHS 161 P+ I L+ + + M++ +++G+ Y+ + Sbjct: 140 PEQYIATLSSDGI-LKMKVIIRQGKNYLVQTPNSLF 174 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 ++ D +++E+ TNG+I P A++ A L+ F + + ++ + K Sbjct: 449 NQSPKDIIILEIWTNGSILPRTALKHATQNLSNLFIKFQNAKMMKNSFFETNK-----TY 503 Query: 254 LRPVDDLEL 262 + + L Sbjct: 504 TQTIRQLYE 512 >UniRef50_Q4UG79 DNA-directed RNA polymerase alpha chain, putative n=2 Tax=Piroplasmida RepID=Q4UG79_THEAN Length = 680 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 29/262 (11%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 L+ I + K + P G T+G+ L+ + S PG AV V+I +++ +T + Sbjct: 252 LIRIPDTGRLYQKFYMGPYPVTMGWTIGSLLKVMTQSRCPGHAVVAVKIHN-MNKDTTVD 310 Query: 73 GVQEDILEILLNLKGLAV-RVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 GV +D+L I LN K +A+ ++ E + G V A + V+I P+ I Sbjct: 311 GVADDLLNIALNFKMVALQTLEPGKEARVRTKIKGPAMVCAGALEWPPFVKICNPESYIT 370 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSE---------------EDERPIGRLLVDAC 176 L +E A + + IK++ GRG+ A ++ ++ + G Sbjct: 371 KL-EEGAELDLEIKIEWGRGFWMADSKGLYRVEEGANSLCQKRRDIKEVKEEGFYPTSCV 429 Query: 177 YSPVERIAYNVEAARVEQ--------RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + I V ++ +D+LV+E+ T+ + P+ + L E + Sbjct: 430 FGGCRMIRLAVHKLMGQRWCSLTYTCPDPMDQLVVEIWTDVSTTPKHVLEFG---LCEVI 486 Query: 229 EAFVDLRDVRQPEVKEEKPEFD 250 +L+ +V E + Sbjct: 487 AWLTELKRQVSHDVDFENEDEQ 508 >UniRef50_B3LBN8 Dna-directed rna polymerase alpha chain,putative n=9 Tax=Plasmodium RepID=B3LBN8_PLAKH Length = 674 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 7/231 (3%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 K + + E NA RR+ + + G VT + I + HE+ Sbjct: 290 FKQIQPVKYHQGRAYTYFFMHSHEVELSPIFLNAFRRVAMKHLKGGRVTALRIPNMKHEF 349 Query: 69 STKEGVQEDILEILLNLKGLAVR-----VQGKDEVILTLNKSGIGPVTAADITHDGDVEI 123 GV+E+ ++ NL+ + + + + + G V A + +EI Sbjct: 350 YCIVGVRENFFDLAQNLRQITFKNVPENIDMDNYITGKFRIKGPMIVVAGHMQLPKGIEI 409 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLVDACYSPVER 182 V IC ++ + + M +K++ YV P D + + +PVE Sbjct: 410 VNKNQYICSVS-AGSYLEMDVKIESIEEYVMPEYGSQSRNRDICKDNFIHFSSSCTPVEY 468 Query: 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 + + + T + ++EM T+G+I P+ A+ + ++E + + Sbjct: 469 FGFMGQRRGINLDTLGEINIVEMHTDGSITPKSALLKTIDYISENFQYMEN 519 >UniRef50_A8DR58 DNA-directed RNA polymerase alpha subunit (Fragment) n=1 Tax=uncultured bacterium RepID=A8DR58_9BACT Length = 219 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 92/196 (46%), Positives = 129/196 (65%), Gaps = 4/196 (2%) Query: 59 VEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILT-LNKSGIGPVTAADITH 117 ++IDGVLH+YS +G+QED++E+LLNLK LA + + + KS GPV A+D Sbjct: 19 IKIDGVLHDYSALDGLQEDVVEVLLNLKELAFNIASDENTVAINFEKSSPGPVLASDFAD 78 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177 ++E+ P VIC++T + M + QRGRGY A R + +E+ IG L +DA Y Sbjct: 79 QSNIEVFNPNLVICNVTS--GVLKMELTAQRGRGYELAVNRDV-DRNEKSIGVLQLDASY 135 Query: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 SPV++++YNVE AR R DLDKLVI++ETNG I PE+AIR ++TIL +QL AFV+L Sbjct: 136 SPVKKVSYNVEVARFGGRADLDKLVIDLETNGAISPEDAIRISSTILQQQLLAFVNLDSK 195 Query: 238 RQPEVKEEKPEFDPIL 253 E +++ EFDPIL Sbjct: 196 LLKEPTKKEEEFDPIL 211 >UniRef50_B2X2B7 RNA polymerase alpha subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B7_CHLMO Length = 633 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 5 VTEFL-KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG 63 +++F+ + IE S + L P E T+ N LRR LLS + G A+ VEI+G Sbjct: 1 MSQFIISCKESRIENNRSFYGCFELGPFEPSQSLTIANTLRRTLLSEIYGLAIVSVEIEG 60 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKD--EVILTLNKSGIGPVTAADITHDGDV 121 HEYS+ GV E +L+ILLNLK + ++ K+ I L G G VT + + + Sbjct: 61 ASHEYSSLPGVHESVLDILLNLKEIVLKKSIKNFTPQIGYLRARGPGVVTGSHLRLPPFI 120 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 + V P I L+ N ++++ VQ G AS R+ P Sbjct: 121 QCVDPDQYIATLS-HNGFLNIKFVVQYG-NKWLASGRMPDSSINLPSEI 167 Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 17/137 (12%) Query: 194 QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 + + +E+ TNG++ P +A+ +A L + +++ Sbjct: 467 KENIKHNITLEIWTNGSLHPRDALNQAFKNLIKTFLQLKNVQPY------GLNNLLFNSQ 520 Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQ--RTEVELLKTPN--LGKKS-LTEIKDVLA 308 ++ L T L+ I +L + L + N G++S L +I Sbjct: 521 SLSINALGET------LQVSNISEENELALDPTNKKNLKRGKNDFSGQQSKLEQILLKKI 574 Query: 309 SRGLSLGMRLENWPPAS 325 G+ +E P + Sbjct: 575 RMGVFKKDFIETLSPLN 591 >UniRef50_B8R199 RNA polymerase alpha subunit n=2 Tax=Volvox carteri RepID=B8R199_VOLCA Length = 768 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 26/228 (11%) Query: 2 QGSVTE------FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCA 55 + + + F+ + IE +S + L P + T+ N +RR LLS + A Sbjct: 8 KNIMAKMQTTDFFIACKESRIENNTSFYGCFYLGPFDDSLSQTIANDIRRTLLSELTSLA 67 Query: 56 VTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRV-----------QGKDEVILTLNK 104 +T +EI+G+LH+YS+ G++E +L+++ NL+ + ++ K LN Sbjct: 68 ITSIEIEGILHKYSSLPGMKETVLDLICNLQSIVLKKQEISFTNITLRSTKKTYRGFLNV 127 Query: 105 SGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEED 164 SG + A D+ ++ V P I L E+ ++M++ + G+ ++ Sbjct: 128 SGPRVIKAMDLKLPSGLQCVDPNQYIATLA-EDGLLNMKLNINEGKNFIKQKPHNLDVSV 186 Query: 165 ERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTID 212 + LL + ++ A++ + + D+ ++TN Sbjct: 187 LKKRNLLL--QNFK--KKAAFSSRKLLLGKHNCKDR----IKTNQATT 226 Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 L P+ L++++R+ LK I I DLV+ ++ +LLK NLGKKSL I+ L+ GL Sbjct: 703 LKAPIGILKISLRAYTALKKAGILTINDLVKCSKNDLLKINNLGKKSLVLIETSLSYLGL 762 Query: 313 SL 314 +L Sbjct: 763 TL 764 Score = 41.5 bits (96), Expect = 0.047, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 163 EDERPIGRLLVDACYSPVERIAYNVE---AARVEQRTDLDKLVIEMETNGTIDPEEAIRR 219 + +V+ +P+++ +E +++ +L++E+ TNG+I P +A+ + Sbjct: 540 SNIFKNTFKIVNTSINPIKQQTMYLEYAKNIKLKPLRKKSQLIVEIWTNGSIHPRQALYQ 599 Query: 220 AATILAEQLEAFVDLRDV 237 T L+ ++ + Sbjct: 600 CFTFLSNNFLKLQTVKML 617 >UniRef50_Q8IKB1 DNA-directed RNA polymerase, alpha subunit, putative n=3 Tax=Plasmodium RepID=Q8IKB1_PLAF7 Length = 861 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 107/274 (39%), Gaps = 26/274 (9%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++ Q + K + PL GHT G+ ++ + + + G A+ +++ ++E + Sbjct: 469 IIKYPQNGKLYQKFYIGPLNITDGHTFGSLIKYVCQTQIYGYAIVGIKVHN-MNEDTKIN 527 Query: 73 GVQEDILEILLNLKGLAVRVQGKD-EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVIC 131 VQED+LEI LN+ + + + + E + L G + A I ++I+ +H IC Sbjct: 528 NVQEDLLEIALNISDVCIYSKEINLESNIRLIFKGPLMLVAGMIPLPSHLKIINKEHYIC 587 Query: 132 HLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPI---------------GRLLVDAC 176 + E+ I + IK++ G+G+ + + + + + + Sbjct: 588 TI-KEDGFIDISIKIEYGKGHWLTYDKGLYKRERGSDNDCMKKREIKEVVHKNYMPISSS 646 Query: 177 YSPVERIAYNVEAA--------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQL 228 + I V R E LV+E+ T+ + P+ + + + L Sbjct: 647 FGACRMIRLTVHKIATKFWCEDRCEFTDPKQMLVVEIWTDCRMLPKNVLLYGIKNIKKIL 706 Query: 229 EAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 F ++ +E+ + L +D + Sbjct: 707 RKFREMIVKDTDFTFQEEEQEIKNLWPAIDKYKF 740 >UniRef50_Q8HUH2 DNA-directed RNA polymerase subunit alpha n=1 Tax=Chlamydomonas reinhardtii RepID=RPOA_CHLRE Length = 550 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 12/175 (6%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 F+ + IE ++ + L P + TL N LRR LLS + G A+T +EI+GVLH+ Sbjct: 20 FIACKESRIENNTNFYGCFYLGPFDESLSQTLANDLRRTLLSELTGLAITSIEIEGVLHK 79 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQ-----------GKDEVILTLNKSGIGPVTAADIT 116 +ST G++E +L+++ NL+ + +R + K I L+ +G + AAD+ Sbjct: 80 FSTLTGMKEPVLDLICNLQNIVLRKETISSTNMNYRATKKTYIGFLSVNGPRVIKAADLK 139 Query: 117 HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRL 171 ++ V P I L E+ ++M+ + G+ Y+ + L Sbjct: 140 LPAGLQCVDPNQYIATLA-EDGFLNMKFNINEGKNYIKQKPYNLDVTTLKKRNIL 193 >UniRef50_Q2WGF4 RNA polymerase alpha chain like (Fragment) n=1 Tax=Selaginella uncinata RepID=Q2WGF4_SELUN Length = 245 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 79/224 (35%), Gaps = 9/224 (4%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG-VLHEY 68 + ++ H++ + P + G TLG A+RR G T + HEY Sbjct: 14 RCIEPKVDNERPCHSRSIIPPPKIGQASTLGIAMRRAPPGESEGACTTPAGSPERINHEY 73 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 GV+E + E +NLK +A+ + G G V A D + I+ P Sbjct: 74 PAIAGVRESVHETSMNLKEIALTAHPSAAQEAHIPIVGPGKVAARDTVPPSSIGIIYPAQ 133 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 +T + S +V+ G GY + + + P DA P+ Y++ Sbjct: 134 HAATVTRK-IRSSTGSRVEGGCGYRRRNMVEYQKGSPPP------DAVSMPIRNANYSIH 186 Query: 189 AARVEQRTD-LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 + E T+G+ P EA A+ A Sbjct: 187 RLESHSGGIMKEMPPPEARTDGSPTPGEATYEASRDSANLFSPV 230 >UniRef50_Q06J39 DNA-directed RNA polymerase subunit alpha n=1 Tax=Bigelowiella natans RepID=RPOA_BIGNA Length = 358 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 123/352 (34%), Gaps = 48/352 (13%) Query: 7 EFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 + + + +++ + P + N LRR+LLS +T V I G H Sbjct: 4 KLFSCIESRLRGKRNYYSRFYIGPFLKNQAFLYSNVLRRVLLSDSSNIVITAVNIVGAKH 63 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADITHDGDVE 122 EYS GV+E L++LLNLK L L +G + +DI + Sbjct: 64 EYSLLPGVRESSLDLLLNLKELVFVKDIYTKFNKSYFAYLKSNGPKIIRCSDIILPNTIY 123 Query: 123 IVKPQHVICHLT-DENASISMRIK------VQRGRGYVPASTRIHSEEDERPI--GRLLV 173 V I ++ +++ + M++ Y S + D L++ Sbjct: 124 AVDSTQYIATISNNKSLILKMKLTANLLNNFYSNLNYELNSLLSYYTNDILEKTNFSLII 183 Query: 174 DACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 D +S V ++ ++ + D + +E+ TN + P I+ + + + D Sbjct: 184 DPNFSCVNKVNSSLISL-DNLENYNDSISLEVWTNSSYSPRIIIQNSIKSMVNLFLSIYD 242 Query: 234 LRDV----------------------------------RQPEVKEEKPEFDPILLRPVDD 259 + VK + + L +D+ Sbjct: 243 TSFIDIKLENSDNFLENHLVSLSNRATFFKKSFFNICTEFNTVKYKTSFDKNLTLISIDE 302 Query: 260 LELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRG 311 L+L++ S LK I + DL + + L + N+ K+L I+ + G Sbjct: 303 LDLSIYSKFLLKRHNILTLYDLFKIDKRVLERFYNISYKTLQSIERKMVKYG 354 >UniRef50_Q3ZJ77 DNA-directed RNA polymerase subunit alpha n=1 Tax=Pseudendoclonium akinetum RepID=RPOA_PSEAK Length = 577 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 L +E ++ + + L P G T+ NALRR LLS +PG ++T VE+ G +E Sbjct: 41 LLSCIDSRVENLTKFYGRFELGPFAPGQALTVANALRRSLLSQLPGTSITLVEVRGASNE 100 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVK 125 Y GV+E IL+ILLNLK + + + I L+ G G + A D+ + V Sbjct: 101 YEIITGVRESILDILLNLKQIVLTSDFEIFSPQIGFLSVEGPGVIRANDLKLPSFIYAVD 160 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIH 160 P I L++ ++M+ + G+ Y+ + Sbjct: 161 PNQYIATLSNSG-RLNMKFLICCGKNYITYNPNDS 194 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 36/199 (18%) Query: 152 YVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTI 211 V + + + IG +DA + P+ R+ Y +E+ + D++++E+ TNG+I Sbjct: 378 KVDYDSDFNLDHKSTKIGYFPIDAIFMPINRVNYLIESTEDIKLKIKDRVILEVWTNGSI 437 Query: 212 DPEEAIRRAATILAEQLEAFVDL------------------------------------R 235 P AI +AA L + + Sbjct: 438 HPRHAIHKAAKALIQLFLPLQQIRTNLFLISDNSHFEEGQDKIKKRIDNFKKEALLKANP 497 Query: 236 DVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 295 ++ +++ +L + +LELT R +CLK I+ I DL+ ++ +LL N Sbjct: 498 QIQANPQLKKRNFDHRLLELDIANLELTARPYSCLKLANINTIEDLISYSQEDLLSIKNF 557 Query: 296 GKKSLTEIKDVLASRGLSL 314 G++SL E++ L L+L Sbjct: 558 GRRSLIEVQKALQLMKLTL 576 >UniRef50_Q9TL28 DNA-directed RNA polymerase subunit alpha n=2 Tax=cellular organisms RepID=RPOA_NEPOL Length = 495 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 ++K + + + + PL G G TLGNALRRILL + G A T + G HE Sbjct: 3 YIKHIETKRISARTYYGRFCVLPLPAGQGITLGNALRRILLGDLVGFAATSANLAGASHE 62 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEV-------ILTLNKSGIGPVTAADITHDGD 120 + T G++E +LEILLN+K L + +LN +G VTA D+ Sbjct: 63 FDTLPGIRESVLEILLNIKQLVFKQISSRPKDTNRFAMRASLNLTGPATVTAKDLVLPSW 122 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVP 154 +++V P I L AS+ I++ +G GY Sbjct: 123 MKVVDPSQYIATLAS-GASLEFEIQLSQGSGYRL 155 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 79/143 (55%), Gaps = 3/143 (2%) Query: 170 RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 L +DA + PV R+ Y VE + R ++LVI++ TNG++ P +A+ +AA IL L Sbjct: 237 TLHIDAVFFPVTRVNYRVEEEVINGRR-REELVIDIWTNGSLSPRKALDQAAVILIRMLA 295 Query: 230 AFVDLRDVRQPEVKEEKPEF--DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEV 287 + + K+ + I L P++ L+L+VRS NCLK I +G L+ T Sbjct: 296 SLQAPPPLLIEPEKKPTTKTIAKEIALTPIESLDLSVRSFNCLKRANITNVGKLIAYTRQ 355 Query: 288 ELLKTPNLGKKSLTEIKDVLASR 310 ELL+ N G KS +E+ DVL SR Sbjct: 356 ELLQLKNFGTKSASEVVDVLNSR 378 >UniRef50_UPI000169A5A9 DNA-directed RNA polymerase subunit alpha n=1 Tax=Francisella tularensis subsp. holarctica FSC200 RepID=UPI000169A5A9 Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-D 62 ++ L P + I++ + K + E LERG G+TLG AL++ +L S+ G VT ++I D Sbjct: 2 ALENLLHPTNIKIDEYAKNATKFSFEALERGVGYTLGFALKQTMLYSIAGACVTSIKIND 61 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDGDV 121 G + E + +I+LN+K L+V + + + +T SG ++ + Sbjct: 62 GKVTSLEDVIPCDETVADIILNVKSLSVTLAEDVETGTITFELSGSEEEIFSEEAKLSEG 121 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVE 181 + + IC + + + KV++G G+ PA +D G L+DA +SPV Sbjct: 122 LAITEEVFICSY-NGGKKLKIEAKVEKGVGFRPA-------QDNFKDGEFLLDATFSPVV 173 Query: 182 RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 + ++ ARV +RTDLDKL + ++TNG ++ EEA+R AAT + QL V Sbjct: 174 FCDFEIKDARVGRRTDLDKLELNIKTNGNVNCEEALRLAATKIQNQLRNIV 224 >UniRef50_A6YGD4 Alpha subunit of RNA polymerase n=1 Tax=Leptosira terrestris RepID=A6YGD4_LEPTE Length = 537 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 E S + + + P G G T+ N LRR LLS + G A+T VEI HEY T G+ E Sbjct: 20 ETNRSFYGRFEIGPFAHGQGITVANMLRRTLLSELSGLAITAVEIKEASHEYMTLPGISE 79 Query: 77 DILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLT 134 + +I+LNLK L R L+ G + A+ ++ V P I L Sbjct: 80 SVQDIILNLKQLIFRSNFDLKQPEFGFLSIQGPAIIKASHFRLPSFIKCVDPNQYIATLA 139 Query: 135 DENASISMRIKVQRGRGY 152 N +++++++ +G+ Y Sbjct: 140 F-NGQLNLKVQICQGKNY 156 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 158 RIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAI 217 + + + L VDA ++PV ++ Y + + + +++++E+ TNG+I P+ AI Sbjct: 459 KEIENKLIKTDNILPVDAIFTPVTKVNYLI-CLDEKVKPFKEQILLEIWTNGSITPKTAI 517 Query: 218 RRAATILAEQLEAFVD 233 +AA + + L Sbjct: 518 YKAADCILDLLLPLSK 533 >UniRef50_P19587 DNA-directed RNA polymerase subunit alpha n=1 Tax=Scenedesmus obliquus RepID=RPOA_SCEOB Length = 478 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 3/171 (1%) Query: 8 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE 67 FL + +E S + +L P + T+ NALRR LL+ + A+T +EI+GV HE Sbjct: 9 FLSCKECILENPRSFYGSFSLGPFKNSQSLTVANALRRTLLAELSNIAITHLEIEGVTHE 68 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVK 125 YST GV+E +L++LLN KG+A++ + L G G V A+D+ ++ V Sbjct: 69 YSTLVGVRESVLDLLLNFKGIALKNTSPVTKPLFGYLQVRGPGVVRASDLKFPPMIQCVD 128 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 P I L +EN + ++ ++ + S+ D Sbjct: 129 PDQYIATL-NENGKLILKFRISDFKNSQENLNFEVSKTFLNIPNFGHFDTS 178 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 56/233 (24%) Query: 144 IKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAAR-VEQRTDLDKLV 202 ++++ + + + + + L VD ++P+ ++ Y +E +++ + + Sbjct: 244 FRIEKNQQDFNKNKNGNFDSQKNKTNSLWVDPLFNPILKVNYIIETIEPMQKNIPNEIVF 303 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLE--------------------------------- 229 IE+ TNG+I P +A A L + Sbjct: 304 IELWTNGSIHPRKAFYTALLYLKTMFDKLDCMRLLNYEFSNTMLESEKTSTKFFKTFEYD 363 Query: 230 -------------AFVDLRDVRQPEVKEEKPEF---------DPILLRPVDDLELTVRSA 267 +F + E+++ + ++ + P+ +L L R Sbjct: 364 FRFYNSREDKTMKSFTPEKFFLPEEIEDVEKDYLLNLKNQADNTWNDLPLTNLNLPYRIT 423 Query: 268 NCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L +GDL++ + EL K +G + ++ GL LG R E Sbjct: 424 KILAKNNFFVVGDLLKISPNELKKLSGIGNYCVFILQKRFEKLGLKLGSRNEK 476 >UniRef50_A7DUN8 RNA polymerase alpha subunit (Fragment) n=1 Tax=Streptococcus criceti RepID=A7DUN8_STRCG Length = 168 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 4/166 (2%) Query: 83 LNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISM 142 LN+KGLAV+ +DE + L+ G VTA D+ D D+EI+ P H + + E S+ Sbjct: 1 LNVKGLAVKSYVEDEKTIELDVQGPAEVTAGDVLTDSDIEIINPDHYLFTIA-EGHSLKA 59 Query: 143 RIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLV 202 + V + RGYVPA ++ D P+G L VD+ Y+PV+++ Y VE ARV DKL Sbjct: 60 TMTVAKNRGYVPAEG---NKSDSAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLT 116 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPE 248 IE+ TNGTI PE+A+ +A +L E L F DL ++ + ++ E Sbjct: 117 IEIMTNGTIIPEDALGLSARVLIEHLNLFTDLTEIAKTTEVMKETE 162 >UniRef50_A7AQ59 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AQ59_BABBO Length = 610 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 91/236 (38%), Gaps = 24/236 (10%) Query: 17 EQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQE 76 + + L L N+LRR+ + +T + I G+ +E+ + G++E Sbjct: 215 HHNGKSFTFYYVHSLHTNVIPVLLNSLRRVAKRHLGAGRITALRIPGMKNEFYSIVGLRE 274 Query: 77 DILEILLNLKGLAVRV-----QGKDEVILTLNKSGIGPVTAADITHDGD----------- 120 D ++ NL + R +I L G A I D Sbjct: 275 DFFDLSRNLTKVIFRNVPMTATFHRPLIGRLRLKGPIIAVAGHIELDQTFQKEGVGSSSG 334 Query: 121 ------VEIVKPQHVICHLTDENASISMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLV 173 +EIV IC L+ +A + M +K++ YV P D P G + Sbjct: 335 SKDDRRIEIVNKNQYICALS-RDAYLDMEVKIEYIANYVMPEKGPESLNRDITPDGFIHF 393 Query: 174 DACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +P+E A++ + +++ + + + +E+ T+G+ P A+ AT + E Sbjct: 394 SSSCTPIEVFAFDGDRRGIDEESTSEIVTLELHTDGSTTPRLALLNCATFIETWFE 449 >UniRef50_O21260 DNA-directed RNA polymerase subunit alpha, mitochondrial n=1 Tax=Reclinomonas americana RepID=RPOA_RECAM Length = 222 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 113/222 (50%), Gaps = 16/222 (7%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGV--LHEYST 70 ++ + + +V + PLE+ F + N LR+I+ G ++ ++I+G+ LH YS Sbjct: 11 IIHVLKHDFNSIQVLIGPLEKNFSGSFANLLRKIIFRYTSGVSIIGLKINGIDSLHSYSL 70 Query: 71 KEGVQEDILEILLNLKGLAVRVQGK--DEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 128 GV+ED+L +L NLK L +++ ++LT+ K G + + DI +++I+ Sbjct: 71 IPGVKEDVLNVLNNLKHLLIQIDDYDYKPILLTIQKKGPYIIKSKDIICPSNIKILNDDL 130 Query: 129 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVE 188 IC L + ++ I + + G GYV ++ + + + D + P++ ++Y V Sbjct: 131 YICTLEN-DSQIDLTLIGDIGCGYVLSTYFGNRKS------IVYSDTNFCPIKHVSYYVR 183 Query: 189 AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 + T ++L+ ++TNGT +P ++ A + L +++ Sbjct: 184 SY-----TTYEELIFYIKTNGTCNPLFVMKNAFSFLKDKINI 220 >UniRef50_Q4N9I8 DNA-directed RNA polymerase, alpha subunit, putative n=1 Tax=Theileria parva RepID=Q4N9I8_THEPA Length = 746 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 67/374 (17%), Positives = 124/374 (33%), Gaps = 91/374 (24%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 L+ I + K + P G T+G+ L+ + S PG AV V+I +++ +T Sbjct: 274 LIRIPDTGRLYQKFYMGPYPVTMGWTIGSLLKVMTQSRCPGHAVVAVKIHN-MNKDTTVN 332 Query: 73 GVQEDILEILLNLKGLAVR----------------------------------------- 91 GV +D+L I LNLK ++ Sbjct: 333 GVADDLLNIALNLKMVSYTHFYTIYTHFTHLHIYTFTHLHIYTFTHLHTYTFLQIFTQFI 392 Query: 92 -----VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKV 146 ++ E + G + A + V++ P+ I L +E A + + IK+ Sbjct: 393 VSLQTLEYGKEARVRTVIKGPAMLCAGALEWPSFVKLCNPECYITKL-EEGAELDLEIKI 451 Query: 147 QRGRGYVPASTRIHSE---------------EDERPIGRLLVDACYSPVERIAYNVEAAR 191 + GRG+ A ++ ++ + G + I V Sbjct: 452 EWGRGFWMADSKGLYRLEEGANSLCHKRRDIKEVKEEGFYPTSCVFGGCRMIRLAVHKLM 511 Query: 192 VEQ--------RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLR------DV 237 ++ +D+LV+E+ T+ + P+ + + + L F + Sbjct: 512 GQRWCSLTYTCPDPMDQLVVEIWTDVSTTPKHVLEFGLSEVIAWLTEFKRQVSHDVDFEH 571 Query: 238 RQPEVKEEKPEFDPILLR----------PVDDLELTVRSANCLKAEAIHYI--GDLVQRT 285 ++K+ + D PV L T N L+ E Y+ GD + Sbjct: 572 EDEQLKDIWEKIDKYGSMKHRQELMGGPPVVPLHETDAIPN-LRQEDCQYVNPGDHTKIP 630 Query: 286 EVELLKTPNLGKKS 299 + PN G S Sbjct: 631 QANF-SLPNSGPHS 643 >UniRef50_D0FY14 Alpha subunit of RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY14_DUNSA Length = 547 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 26/170 (15%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTK 71 + IE S + L + G T+ NALRR LLS G A+ V+ID V HEYST Sbjct: 2 KESRIENNKSFYGCFYLGSFDSGQSITVANALRRSLLSDCTGLAIISVKIDAVQHEYSTL 61 Query: 72 EGVQEDILEILLNLKGLAVR-------------------------VQGKDEVILTLNKSG 106 GV++ +L+ILLN K + ++ V+ L G Sbjct: 62 PGVRDSVLDILLNFKEIVLKKVKNPFGGPNGYKNKGLSSVYDKVGSTFFKPVVGYLKVKG 121 Query: 107 IGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPAS 156 G + A D+ ++ V P I L E+ ++++ + G+ Y Sbjct: 122 PGIIRAKDLRLPPFIQCVDPNQYIATLA-EDGVLNVKFVIMEGKSYYVQK 170 >UniRef50_B9Q9G8 RNA polymerase Rpb3/Rpb11 dimerisation domain-containing protein, putative n=2 Tax=Toxoplasma gondii RepID=B9Q9G8_TOXGO Length = 1084 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 52/294 (17%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--------- 62 + I + + K+ + P+ G T+G+ ++ PG AV +++ Sbjct: 603 NVTIIPETGHLYQKLYIGPVPVTTGWTMGSLIKAFAAQRCPGHAVVALKLHAPRKPNAGG 662 Query: 63 ---------------GVLHEY---STKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLN 103 G E + V+ED+LEI LNLKG+A ++ ++ + + Sbjct: 663 RRGRKKTGEGEPQSAGGEAEAPMVTQLPNVREDLLEIALNLKGVAFETLRPRESACVRVK 722 Query: 104 KSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G + A I V + P+H I + +E + + +K++ GRG A E Sbjct: 723 AVGPQLLVAGMIDWPSFVRVGNPEHFIAKV-EEGGVLDLEMKLEWGRGAWLADLHGLYRE 781 Query: 164 DE---------------RPIGRLLVDACYSPVERIAYNVEAA--------RVEQRTDLDK 200 +E G + + V R ++ Sbjct: 782 EEGVDTRCYKRRRIWEVDHRGFYPTSCIFGACTMMRLAVHKLMGTRFCQDRQASTNPTEQ 841 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL 254 LV+E+ T+ + P+E + A + L E++ Sbjct: 842 LVLEIWTDASKSPKEVLAFALQDMLAWLVDLRRQLVEDVDWKTEDEDLTAAWKH 895 >UniRef50_B6K900 RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Toxoplasma gondii ME49 RepID=B6K900_TOXGO Length = 623 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 52/294 (17%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID--------- 62 + I + + K+ + P+ G T+G+ ++ PG AV +++ Sbjct: 142 NVTIIPETGHLYQKLYIGPVPVTTGWTMGSLIKAFAAQRCPGHAVVALKLHAPRKPNAGG 201 Query: 63 ---------------GVLHEY---STKEGVQEDILEILLNLKGLAV-RVQGKDEVILTLN 103 G E + V+ED+LEI LNLKG+A ++ ++ + + Sbjct: 202 RRGRKKTGEGEPQSAGGEAEAPMVTQLPNVREDLLEIALNLKGVAFETLRPRESACVRVK 261 Query: 104 KSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEE 163 G + A I V + P+H I + +E + + +K++ GRG A E Sbjct: 262 AVGPQLLVAGMIDWPSFVRVGNPEHFIAKV-EEGGVLDLEMKLEWGRGAWLADLHGLYRE 320 Query: 164 DE---------------RPIGRLLVDACYSPVERIAYNVEAA--------RVEQRTDLDK 200 +E G + + V R ++ Sbjct: 321 EEGVDTRCYKRRRIWEVDHRGFYPTSCIFGACTMMRLAVHKLMGTRFCQDRQASTNPTEQ 380 Query: 201 LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL 254 LV+E+ T+ + P+E + A + L E++ Sbjct: 381 LVLEIWTDASKSPKEVLAFALQDMLAWLVDLRRQLVEDVDWKTEDEDLTAAWKH 434 >UniRef50_Q4UCN2 DNA-directed RNA polymerase D subunit, putative n=2 Tax=Theileria RepID=Q4UCN2_THEAN Length = 587 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 50/270 (18%) Query: 9 LKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 K + L L N+LRR+ + +T + I G+ +E+ Sbjct: 151 FKQIQPVRHHNGKAFTFFYIHSLHTDVIPVLLNSLRRVAKRHLGSGRITALRIPGMENEF 210 Query: 69 STKEGVQEDILEILLNLKGLAVRVQGK-----DEVILTLNKSGIGPVTAADITHDG---- 119 + G++ED E++ NL+G+ + K VI TL G A + D Sbjct: 211 YSVVGLREDFFELVRNLRGVIFKNVPKTATFHRPVIATLRLKGPIIAVAGHLKFDNKRST 270 Query: 120 ---------------------------------------DVEIVKPQHVICHLTDENASI 140 ++E++ H IC L+ + + Sbjct: 271 KTASDIDNKTENKNDNTDTKADNEEGVINDYVYDKKYTGEIEVINKNHYICSLS-QGCYL 329 Query: 141 SMRIKVQRGRGYV-PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLD 199 +M +K++ YV P D P G + + +PVE + E +++++ + Sbjct: 330 TMDVKIEYISNYVIPEFGPESLNRDITPDGFIHFCSSCNPVEIFGFTGERRGLDEQSTSE 389 Query: 200 KLVIEMETNGTIDPEEAIRRAATILAEQLE 229 + +E+ T+G+ P A+ R+AT L + Sbjct: 390 IVSLELHTDGSATPRVALLRSATFLLNWFD 419 >UniRef50_C6UN28 Putative DNA-directed RNA polymerase, alpha subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN28_HODCD Length = 228 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 6/199 (3%) Query: 36 GHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQ-G 94 HTL ALRR L++ + G AV + +DG H + EGV ED+L + N + + G Sbjct: 25 AHTLAVALRRTLMARVEGWAVVGLCVDGAAHALARAEGVIEDVLGVAANAARIVFEGECG 84 Query: 95 KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVP 154 V+ + ++ G VTA + + +V +C + V RG GY+ Sbjct: 85 SRRVVKAVVRASAGVVTAGQLVLPEGLRVVNTNERVCSV-GAGCVFRAEFVVARGVGYMR 143 Query: 155 ASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPE 214 A+ + + G +VDA +SPV+R++Y V +A ++ D+ + +ETNG +D Sbjct: 144 AA-QARARWSRVLAGYTVVDAHFSPVKRVSYKVSSAEDDRSC--DRAQLVIETNG-VDGA 199 Query: 215 EAIRRAATILAEQLEAFVD 233 A+ A L+ + Sbjct: 200 HAVVDACRELSRCFQLVGC 218 >UniRef50_Q06FN2 Putative DNA-directed RNA polymerase subunit alpha-like 1 n=3 Tax=Pelargonium x hortorum RepID=RPAL1_PELHO Length = 574 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 16/239 (6%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY--ST 70 + + L PL L LR LL+ + T +I Sbjct: 14 ECKDLHNDLLYGRFALSPLTAKESRLLKKGLREALLTGILCLRFTHAKIQNACKNLNLMN 73 Query: 71 KEGVQEDILEILLNLKGLAVRVQ-----GKDEVILTLNKSGIGPVTAADITHDGDVEIVK 125 G+QE + EIL N + + + GK + L+ G A DI +++ Sbjct: 74 IVGIQESLDEILKNFGKIILTGKLEEFVGKGPFVAILDVRGPLNAMAVDIELPPGIKVEI 133 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAY 185 I +T E + ++++ S+ E +D P++++ Sbjct: 134 ETQHIATIT-EPIPFVVELRIE------LVSSTSKGETGITDEEGFSIDPN-PPIQKVNS 185 Query: 186 NVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKE 244 +++ +T L IE+ + P +A+ + + + + + + E+++ Sbjct: 186 SIQGYEYGGQT-FQTLFIEILSTSPTVPNKALLLVSMKIMNLFQIVLQAKYLDYKELEK 243 Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 172 LVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 +D+ ++PV+ + +E+ E +T +L +E+ T +P+EA+ A+ + E F Sbjct: 290 SIDSNFTPVQNLDCRIESYEEEGQT-FQRLFLEIWTKSPTEPQEALWEASAKILELFSLF 348 Query: 232 VDLRDVRQPEVKEEKPEFDPILLRPVDDLEL 262 + + ++K+ ++ + + L L Sbjct: 349 LQTSKENEKDLKQIIKDWTENKRKHQEVLRL 379 >UniRef50_Q1Q053 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q053_9BACT Length = 380 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 5/174 (2%) Query: 152 YVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTI 211 + A + ED+ I P + AY E D + E + Sbjct: 198 FQMAFNYDIAGEDDLAIEYYERCTNLRPAHKNAYMNLGILYEDNGKYDDAIFCYE---AV 254 Query: 212 DPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLK 271 E + A+ + + V E +++ +L P+ D EL+VRS NCL+ Sbjct: 255 LDVEPMHERASFCLKSAK--ASSEMVFDEEASKKQGHEGDVLNIPISDFELSVRSRNCLE 312 Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPAS 325 IH + DL + +E +LL N G+ SL EIK +L +GL LG + Sbjct: 313 KMNIHTLRDLTRISEPDLLTFKNFGETSLNEIKAILIQKGLQLGQSYDGHNIEK 366 >UniRef50_A3X1T9 DNA-directed RNA polymerase alpha subunit n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1T9_9BRAD Length = 317 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 47/91 (51%), Positives = 65/91 (71%), Gaps = 1/91 (1%) Query: 232 VDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 + L + P V + +L R VDDLEL+VRSANCLK + I+++G+LVQ++E E+L+ Sbjct: 220 LALPEWPPPNVDFLSQQAGKLLER-VDDLELSVRSANCLKKDGINHVGELVQKSEDEMLR 278 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLENWP 322 TPN G++SL EIKD+LA+ GL LGM L WP Sbjct: 279 TPNFGRRSLNEIKDLLAASGLHLGMDLSGWP 309 Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 34/74 (45%), Positives = 52/74 (70%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 L R +D+LEL+VR++ CLK + + +GD + +E ELL+ PN G+KSL E+K++L GL Sbjct: 157 LYRSIDELELSVRTSLCLKNDDVRLVGDFARNSEAELLRIPNFGRKSLNELKEILGQVGL 216 Query: 313 SLGMRLENWPPASI 326 LG+ L WPP ++ Sbjct: 217 QLGLALPEWPPPNV 230 >UniRef50_Q97B93 DNA-directed RNA polymerase subunit D n=3 Tax=Thermoplasmatales RepID=RPOD_THEVO Length = 271 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 89/270 (32%), Gaps = 53/270 (19%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---VLHE-- 67 V I ++S + ++ + NALRR L++ +P A+ V E Sbjct: 2 EVKIFKLSDKYMSFEIDGITPSQA----NALRRTLINDIPKLAIENVTFHHGEIRDAEGN 57 Query: 68 --YSTKEGVQEDI----------LEILLNLKGLAV---RVQGKDEVILTLNKSGIGPVTA 112 S+ E + ++ LN + + V ++NK G V + Sbjct: 58 VYDSSLPLFDEMVAHRLGLIPLKTDLSLNFRDQCSCGGKGCSLCTVTYSINKIGPASVMS 117 Query: 113 ADIT--HDGDVEIVKPQHVICHLTDENASI------------SMRIKVQRGRGYVPASTR 158 DI D+ V P I L + A + + +V G Y Sbjct: 118 GDIQAISHPDLVPVDPDIPIVKLGAKQAILITAEAILGTAKEHAKWQVTSGVAYKYHREF 177 Query: 159 IHSEE---------DERPIGRLLVD---ACYSPVERIA---YNVEAARVEQRTDLDKLVI 203 +++ + P L D ++ E+ V+ + D + + Sbjct: 178 EVNKKLFEDWAKIKERCPKSVLSEDENTIVFTDDYGCNDLSILFESDGVQIKEDDSRFIF 237 Query: 204 EMETNGTIDPEEAIRRAATILAEQLEAFVD 233 ET+G++ EE + A L ++ V+ Sbjct: 238 HFETDGSLTAEETLSYALNRLMDRWGILVE 267 >UniRef50_UPI00016C3B80 probable DNA-directed RNA polymerase alpha chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B80 Length = 458 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 5/163 (3%) Query: 158 RIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAI 217 D IG Y PV + E DK DP + Sbjct: 215 NDQQGNDHEAIGYYERCLKYPPVGKGVLYNLGVLYEDNDMYDKAADCYRRLAKADPRD-- 272 Query: 218 RRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHY 277 A + + EA + + + ++ +L P+ D EL+VRS NCLK I Sbjct: 273 -ERAKLFVKDSEASLTMHYSPED--EQLTQANRVVLEIPITDFELSVRSRNCLKRMNIRT 329 Query: 278 IGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 +GDL + TE +LL + N G+ SL EI+ ++ ++GL +G L+ Sbjct: 330 LGDLTRVTEPQLLASKNFGETSLDEIRAIMVTKGLRIGQSLDQ 372 Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 51/105 (48%) Query: 210 TIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANC 269 ++D AI + Q + R + PE L +PV DL L+VR+ C Sbjct: 351 SLDEIRAIMVTKGLRIGQSLDQGQQYEFRYRPQQNLSPEEQATLGKPVSDLNLSVRARKC 410 Query: 270 LKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 + I +G+LVQRT ELL+ N G+ SLTE+++ L L L Sbjct: 411 MNRLNIGTLGELVQRTADELLEAKNFGQTSLTEVRERLQQFNLKL 455 >UniRef50_Q5JJF4 DNA-directed RNA polymerase subunit D n=2 Tax=Thermococcus RepID=RPOD_PYRKO Length = 259 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 84/265 (31%), Gaps = 55/265 (20%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYST 70 I + K + G NALRR +LS +P AV EVE + + Sbjct: 2 VEFKILEKRPDSIKFIVS----GVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDE 57 Query: 71 KEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADIT-HDGDVEIVK 125 + + I L + V L+L G G V + D+ DGDV+ Sbjct: 58 I--IAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPAN 115 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTRIHS------------------------ 161 P I L E ++ + GRG A + Sbjct: 116 PNIPIVKLA-EGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKEL 174 Query: 162 --------EEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK----LVIEMETNG 209 EE + I + A Y P + + + + V +ETNG Sbjct: 175 AERRGLPVEESDEEIVITTIKAFYLP-RKF-----EEHMGKGIREEIVPGSFVFTVETNG 228 Query: 210 TIDPEEAIRRAATILAEQLEAFVDL 234 + EE + A IL + + F++ Sbjct: 229 ELPVEEIVSIALKILMRKSDRFINE 253 >UniRef50_Q8SL86 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena viridis RepID=RPOA_EUGVI Length = 214 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 41/218 (18%) Query: 5 VTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE---- 60 + L + + ++ + N LRRILL G ++ Sbjct: 1 MKLIKICVLKNSIFRDTFYSLFDIIYPRSENSLIFANQLRRILLGKSEGLRFLKISGFIA 60 Query: 61 -------IDGVLHEYSTKEGVQEDILEILLNLKGLAVRV---QGKDEVILTLNKSGIGPV 110 + ++E+S E + E + ++ LN+K + + TL Sbjct: 61 NKNSKFSVYQKINEFSEFEEINESVFQLFLNIKNIDLYYRSCDANKRFFGTLEAYYPKTY 120 Query: 111 TAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 + DI +++++K I L+ + ++ ++G G Sbjct: 121 SQDDIILSKNIKLIKKNQHIFSLSSLKLKMKFILEAKKGIG------------------- 161 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETN 208 + ++PV+R+ Y +E ++ ++V+E+ET+ Sbjct: 162 ----SFFTPVKRVNYIIEENKLS----FSRVVLELETD 191 >UniRef50_Q8SL88 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena stellata RepID=RPOA_EUGST Length = 213 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 43/183 (23%) Query: 40 GNALRRILLSSMPGCAV-----------TEVEIDGVLHEYSTKEGVQEDILEILLNLKGL 88 GN LRR LL + G +++ ++EYS E V +L++ N + L Sbjct: 38 GNLLRRTLLKDLEGLRFGNSSIFISRSFSKIPYYHRVNEYSDIEQVNPSLLQVFSNFRNL 97 Query: 89 AVRVQG---KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIK 145 + + + + DI ++ +V P + + + + + Sbjct: 98 HIFSSKPFYRKTSYSMIKVLTSRSYFSKDILLPNNLYVVNPDVQLFEFLSKRYKLRIISE 157 Query: 146 VQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 + +G G +SP++++ Y VE L++E+ Sbjct: 158 ICKGSGK-----------------------SFSPIKKVNYVVE------GIPYASLLLEI 188 Query: 206 ETN 208 T+ Sbjct: 189 YTD 191 >UniRef50_Q7UWL0 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=Q7UWL0_RHOBA Length = 500 Score = 95.0 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 9/138 (6%) Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 E DK + + P+ +A + E + Sbjct: 290 VMYEDNGQYDKAQLCYKRILDCHPDHP-----RTQLYMKDASATGNMLYDEEAQRRNDRL 344 Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 L PV + EL+VRS NCL+ I IGDL + +E ELL + N G+ SL EI+++L+ Sbjct: 345 AQTLNMPVANFELSVRSRNCLQKMGIETIGDLTRHSEQELLSSKNFGETSLVEIREMLSQ 404 Query: 310 RGLSLGM----RLENWPP 323 +GLSLG + N PP Sbjct: 405 KGLSLGQFAGEKKSNDPP 422 Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 228 LEAFVDLRDVRQPEVK--EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 L F + P V P+ +L RP+ DL L+VR+ C+ I+ IG+L+++T Sbjct: 409 LGQFAGEKKSNDPPVDTSHMSPDEQALLERPIADLNLSVRARKCMTRLQINSIGELIRKT 468 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLS 313 ++L+ N G SL E+++ L GL Sbjct: 469 GDDMLECKNFGVTSLNEVREKLGDLGLK 496 >UniRef50_Q2EEW7 DNA-directed RNA polymerase subunit alpha n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOA_HELSJ Length = 246 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 36/250 (14%) Query: 8 FLKPRLVDIEQVSSTHA-KVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLH 66 +K + ++ +A + PL G +LG +R +LL P AV + + + Sbjct: 2 LIKQLSSSYNEYNNNYAASFLIGPLPEGIAQSLGFNIRSVLLKEFPYFAVKNIRFNPENN 61 Query: 67 EYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGI------------------- 107 Y T G +E I I+ + G+ + L KS Sbjct: 62 NYKTHIGTKESIETIINTILGIDFNYSFDFYKAMGLYKSKPKALFQENLSKAKFLCSAKQ 121 Query: 108 ---GPVTAADITHDGDVEIVKPQHVICHLTDEN-ASISMRIKVQRGRGYVPASTRIHSEE 163 G + A D+ ++ P +I H+T +N + + G + I E Sbjct: 122 VGEGILYAKDLMLPVGIKCTTPYKIIAHVTKQNFLGFTFELGFLFG-----LNNNIKFEN 176 Query: 164 DERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATI 223 I P++ I + ++ + + +++ T ++ P + I+ + + Sbjct: 177 KLYSIKTY-------PIQNINIEIINSKKSFNLNSESIILSFTTKSSLQPIDVIKILSYL 229 Query: 224 LAEQLEAFVD 233 L + + Sbjct: 230 LLNKHLILIK 239 >UniRef50_Q8U0E4 DNA-directed RNA polymerase subunit D n=7 Tax=Thermococcaceae RepID=RPOD_PYRFU Length = 261 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 83/261 (31%), Gaps = 47/261 (18%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID-GVLHEYST 70 V I + K L +G + NALRR +L +P AV EVE + Sbjct: 4 IEVQILEKKEDSIKFVL----KGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDE 59 Query: 71 KEGVQEDILEILLNLKGLAVRVQ----GKDEVILTLNKSGIGPVTAADITH-DGDVEIVK 125 + + I L + V L+L G G V + D+ D DV+ V Sbjct: 60 I--IAHRLAMIPLTTPVDRFELDALELDDYTVTLSLEAEGPGIVYSGDLKSDDPDVKPVN 117 Query: 126 PQHVICHLTDENASISMRIKVQRGRGYVPASTR---------------------IHSEED 164 P I L E + + GRG A + ++ Sbjct: 118 PNIPIVKLA-EGQRLVFNAYAKLGRGKDHAKWQPGFVYYKYYTIVHISKSIPEWKELKKL 176 Query: 165 ERPIG-----------RLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDP 213 + G + Y P + Y + E + + +ETNG + Sbjct: 177 AKKRGLPVEETEEEVLVTTIKPFYIPKDFEEYEGKEIWEEIVPNT--YIFTVETNGELPV 234 Query: 214 EEAIRRAATILAEQLEAFVDL 234 EE + A IL + + F+ Sbjct: 235 EEIVSIALKILMRKADRFISE 255 >UniRef50_C1ZD20 DNA-directed RNA polymerase, alpha subunit/40 kD subunit n=2 Tax=Planctomyces RepID=C1ZD20_PLALI Length = 319 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEF 249 E R + I + A + + +E ++ + Sbjct: 99 LLYEDRGNYASAAFCFR---RILAFDPNHVRARMYMKDIE--ATQEMYYDDDMARNEARM 153 Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 +L RPV D EL+VRS NCL + IH +GDL + +E +LL+ N G+ SL EI+D++ Sbjct: 154 AQLLSRPVTDFELSVRSRNCLASMDIHTLGDLTRVSESDLLQGKNFGETSLVEIRDLMQQ 213 Query: 310 RGLSLGMRLE 319 GL +G L+ Sbjct: 214 HGLKVGQNLQ 223 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%) Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + P+ +L RPV DL L+VR+ C+ I +G+LVQ++ ELL T N G SL EI Sbjct: 246 DLSPQEQALLSRPVSDLNLSVRARKCMARLQIGTLGELVQKSADELLATKNFGVTSLNEI 305 Query: 304 KDVLASRGLSLGMR 317 + L L L Sbjct: 306 RAQLTEHNLKLRND 319 >UniRef50_D2R234 RNA polymerase alpha subunit domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R234_9PLAN Length = 440 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 51/102 (50%) Query: 215 EAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEA 274 EA +A + E + +L PV D EL+VRS NCL+ Sbjct: 250 EAFPEHPRARLYSKDAAASGNMLFDEEAQRRNDRLAQVLSIPVTDFELSVRSRNCLQKMG 309 Query: 275 IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 + +GDL + +E ELL + N G+ SL EI+D+L S+GL LG Sbjct: 310 VRTLGDLTRTSEQELLASKNFGETSLVEIRDMLHSKGLELGQ 351 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Query: 228 LEAFVDLRDVRQPEVK--EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 L F + V +P + P+ +L RP+ +L L+VR+ C+ + IG+LV++T Sbjct: 349 LGQFAAEKAVAEPVLDLASMSPDEQALLERPISELNLSVRARKCMARLGLTLIGELVRKT 408 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +LL+ N G SL E+++ L + G+ L Sbjct: 409 GDDLLECKNFGVTSLNEVREKLTTLGIKL 437 >UniRef50_A3Y4L0 DNA-directed RNA polymerase alpha subunit n=2 Tax=Gammaproteobacteria RepID=A3Y4L0_9VIBR Length = 82 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 58/62 (93%), Positives = 62/62 (100%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 MQGSVTEFLKPRLVDIEQ+++THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE Sbjct: 1 MQGSVTEFLKPRLVDIEQINTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 Query: 61 ID 62 I+ Sbjct: 61 IE 62 >UniRef50_P48337 DNA-directed RNA polymerase subunit alpha n=2 Tax=Euglena gracilis RepID=RPOA_EUGGR Length = 216 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 44/198 (22%) Query: 43 LRRILLSSMPGCAVTEVEID-----------GVLHEYSTKEGVQEDILEILLNLKGLAVR 91 +RR LL + +T V V+H + E +++ +LEI K L + Sbjct: 39 IRRYLLLDLESWNITNVMFFVTNNLKNTSTFHVVHNFLGLEELKQSLLEITKKFKLLRFK 98 Query: 92 VQGK----DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQ 147 + K ++ LN + + DI ++++ + ++ N ++ + +K++ Sbjct: 99 LCSKSYQGNKFFAVLNAFEVKDFLSGDIIFPPHLKLLNSRELLFTKISFNITLKILLKIE 158 Query: 148 RGRGYVPASTRIHSEEDERPIGRLLVDACY-SPVERIAYNVEAARVEQRTDLDKLVIEME 206 + A + P++R+ +E ++ ++ Sbjct: 159 AKK------------------------ASFQKPIKRLNLIIEKDEFFDN----YMIFDLT 190 Query: 207 TNGTIDPEEAIRRAATIL 224 T+G++ P A +A Sbjct: 191 TDGSVTPFNAFIKALQSS 208 >UniRef50_Q8SL92 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena granulata RepID=RPOA_EUGGA Length = 216 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 38/199 (19%) Query: 39 LGNALRRILLSSMPGCAVTEVEID-----------GVLHEYSTKEGVQEDILEILLNLKG 87 LGN R+ LL S G + E +++E+S E V E ++ Sbjct: 36 LGNIFRQFLLGSFEGLVINEKRFYVSHTNSLYKDFYLVNEFSLLEEVLEPFYDVWTVFDN 95 Query: 88 LAVR--VQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIK 145 L + L G G + + DI ++ ++ + L ++ I + ++ Sbjct: 96 LRFKEKFSLSKRYYARLLTYGSGEINSKDIIVPSNLSLL-ENKSLFTLITDSLCIDVILQ 154 Query: 146 VQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 + G + ++ VER+ Y +E + + +KL +++ Sbjct: 155 ILSKNG-----------------------SPFNGVERVNYILENSNSG-NINYNKLYLDI 190 Query: 206 ETNGTIDPEEAIRRAATIL 224 T + P EA+ Sbjct: 191 STRYFLSPMEALFECFRKT 209 >UniRef50_Q8SL90 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena myxocylindracea RepID=RPOA_EUGMY Length = 207 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 44/200 (22%) Query: 37 HTLGNALRRILLSSMPGCAVTEV--------EIDGVLHEYSTKEGVQEDILEILLNLKGL 88 + N +RRILL + V+ + + +HE++ E V+ +++ L+ LK + Sbjct: 34 LSFSNLIRRILLKEIYNFKVSTISIFLFNSNKFCYKIHEFTKVEEVKNNLVSFLILLKEI 93 Query: 89 AVRVQGK---DEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIK 145 R K L V DI + +I+ + + L + ++ + ++ Sbjct: 94 KFRSYYKLKTKRTFALLKIKQFTQVFLTDIILPNNFKILSIDNNLIKLNSLDINLKVLLE 153 Query: 146 VQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEM 205 + + +GY ++PV+++ Y E + E+ Sbjct: 154 LHKSKGY-----------------------NFNPVKKVNYIEEN----------NVYFEI 180 Query: 206 ETNGTIDPEEAIRRAATILA 225 TN T P E + ++ I+ Sbjct: 181 YTNQTSTPLEVLVKSLKIIK 200 >UniRef50_C0JWM7 Alpha subunit of RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWM7_MONSK Length = 324 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 61/158 (38%), Gaps = 23/158 (14%) Query: 90 VRVQGKDEVILTLNKSGIGPVTA--ADITHDGDVEIVKPQHVICHLT---------DENA 138 + + K+ G ++A + +++ P+ + + + Sbjct: 171 LSEKNKNNQSSVFVLRGKHLISADQRTNQNPNFAQLINPEQYLATILPIQKTATGLSKFP 230 Query: 139 SISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVE----- 193 + K+ +G + + ++EE G + PV+++ Y VE + Sbjct: 231 EFEIEYKIGKGNLFENLDLQSNNEEFLLNSGP------FFPVKKVNYTVEDIKNSTNNFL 284 Query: 194 -QRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEA 230 +R + + E+ T+G++ PE+A+ +A IL + + Sbjct: 285 WERGFSECVFFEIWTDGSLHPEKALSQAFDILLDFFQQ 322 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG--------- 63 E S + K L L++G G T+ NALRR+LL + G +T+V+ + Sbjct: 32 KNTFENSSLHYGKFYLSGLKKGQGITVANALRRVLLYDIMGLGITKVKFNSKNNENLSSQ 91 Query: 64 VLHEYSTKEGVQEDI 78 LHE+ST G++E I Sbjct: 92 KLHEFSTISGIRESI 106 >UniRef50_B9PR73 DNA-directed RNA polymerase alpha chain, putative n=3 Tax=Toxoplasma gondii RepID=B9PR73_TOXGO Length = 837 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 18 QVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQED 77 S A NALRR LS + A++ V+I+G HE+ + G++ED Sbjct: 51 HNSGCSAFFYFHTCFSSVAPVFLNALRRTSLSRLESLAISAVKIEGAKHEFYSLPGIRED 110 Query: 78 IL-EILLNLKGLAVR 91 I+ +I NL + R Sbjct: 111 IVDDIFNNLGKIVFR 125 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 97 EVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYV-PA 155 + L G A I VE+V + + + ++M K++R R YV P Sbjct: 281 PLRAKLRVRGPLVAVAGHIQLPEGVEVVNKNQYLFTV-NAGYYVNMDFKIERIREYVMPE 339 Query: 156 STRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKL 201 E D G + +PV AY E T D++ Sbjct: 340 FGYDSLERDRDKEGFMYFTNYVAPVPIFAYAAERRGEAVHTKWDEV 385 >UniRef50_B5ID28 RNA polymerase n=3 Tax=Euryarchaeota RepID=B5ID28_9EURY Length = 273 Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 66/275 (24%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 I ++ + K + +G ++ NALRR L++ +P A+ +V + E Sbjct: 2 EFHILELQDRYIKFEI----KGITPSVANALRRTLINDIPKLAIHKVIFHH--GQIRDME 55 Query: 73 GVQED-----ILEIL------------LNLKGLAVRVQGKDE---------VILTLNKSG 106 G D EI+ LN+K R + V TLNK G Sbjct: 56 GNVYDSSTPLFDEIIAHRLGLIPLPTDLNMK---FRDECDHPPDEGCPLCTVTYTLNKHG 112 Query: 107 IGPVTAADITH--DGDVEIVKPQHVICHLTDENASI------------SMRIKVQRGRGY 152 V + D+ D + V P I L + A + + +V G Y Sbjct: 113 PATVYSGDLIPVGDEKFKPVDPLIPIVKLKEHQAILLEAEAIMGTAKEHAKWQVTSGVSY 172 Query: 153 VPASTRIHSEEDER---------PIGRLLVD---ACYS---PVERIAYNVEAARVEQRTD 197 +++D P + D ++ P + IA + + + T+ Sbjct: 173 KYHREIKVNKKDSELWEKVKKSCPKNVIKEDDKFIIFTDDIPCKEIA-EILSFENPEITE 231 Query: 198 LDK-LVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 D + E ET+G++ + + A L + Sbjct: 232 DDSWFIFEFETDGSLKAIDTLEYAIKRLKTRFNTL 266 >UniRef50_Q14PS2 Putative uncharacterized protein n=1 Tax=Spiroplasma citri RepID=Q14PS2_SPICI Length = 111 Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 50/82 (60%) Query: 233 DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 ++++ ++ ++ E + +L +DDLE+T R+ CL+ I+ + DLV +TE E+ Sbjct: 28 EIQEQITIWLEMDETERNQLLNHSIDDLEITQRTQICLEKAKIYRLSDLVSKTENEIKNI 87 Query: 293 PNLGKKSLTEIKDVLASRGLSL 314 NLG+KSLTEIK+ + GL Sbjct: 88 KNLGEKSLTEIKEKMHELGLHF 109 >UniRef50_A3ZU45 Probable DNA-directed RNA polymerase alpha chain n=2 Tax=Planctomycetaceae RepID=A3ZU45_9PLAN Length = 93 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%) Query: 234 LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTP 293 + + +E L ++ LTVR+ NCL+ I + DL+ T +LL Sbjct: 1 MTRIPLNAAAQESESLMSKLEMSTAEIGLTVRTTNCLEERGIFTVRDLLNCTRADLLSIS 60 Query: 294 NLGKKSLTEIKDVLASRGL 312 N G+K+L E+ L S G Sbjct: 61 NFGEKTLDEVYSSLESIGF 79 >UniRef50_A6C7Z0 Serine/threonine protein kinase n=2 Tax=Planctomycetaceae RepID=A6C7Z0_9PLAN Length = 1405 Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 217 IRRAATILAEQLEAFVDLRDV-----RQPEVKEEKPEFDPILLRPVDDLELTVRSANCLK 271 A +L F + + E + ++ D + +L L RSAN L Sbjct: 772 FDNAEEMLRAWRNCFEGIDEPGALSDHADETRLQELLADAEFETQIPELGLGSRSANALD 831 Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAD 328 I + DL+ L++ +G K+ EI + LG + P+S++D Sbjct: 832 RANILTVEDLLTVPMRRLMRLRGVGNKTRREITSAVKILRDRLG--KPDRDPSSLSD 886 >UniRef50_P34778 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena longa RepID=RPOA_ASTLO Length = 220 Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 49/228 (21%) Query: 19 VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGC-AVTEVE---------------ID 62 + + ++P + GN +RR LL ++ +T ++ I Sbjct: 15 KNQNINFLKIKPFNCPNYNFFGNEIRRSLLLNIKKTMTITNIKFFISKSKSKHPKKLKIF 74 Query: 63 GVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEV----ILTLNKSGIGPVTAADITHD 118 ++E+ E ++E++ I +NLK L + K+ + LN +A DI Sbjct: 75 HPVNEFFDIEEIKENLSNICINLKKLRFKFNPKNNKEKKTFIILNSFNKKSFSAKDIIIP 134 Query: 119 G--DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDAC 176 +++IV + + + + ++ + IK++ Y Sbjct: 135 STSNLKIVNLKEHLFNKISQKINLKVLIKIENNENYF----------------------- 171 Query: 177 YSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATIL 224 Y+P++RI + +E +++++ ++ I+P +A + L Sbjct: 172 YNPIKRINFILEK----NNNIGKYIILDLNSDININPFKAFIESLKYL 215 >UniRef50_Q57648 DNA-directed RNA polymerase subunit D n=12 Tax=Methanococcales RepID=RPOD_METJA Length = 191 Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 42/207 (20%) Query: 37 HTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQG-- 94 + NA+RRI++S +P A+ +V I Y + ++IL L L + ++ + Sbjct: 24 ISFSNAIRRIMISEVPTFAIEDVYI------YENSSSMDDEILAHRLGL--IPIKGKPLL 75 Query: 95 -KDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYV 153 + + TL K G V ++D+ + E+ I L + I + + G G V Sbjct: 76 ENEVITFTLEKEGPCTVYSSDLKSENG-EVAFKNIPIVKL-GKGQRIQIECEAIPGIGKV 133 Query: 154 PASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDP 213 A + +A Y ++ D++ +ET G ++ Sbjct: 134 HAKWQ-------------PCNAVY----------------KQIADDEVEFFVETFGQMEA 164 Query: 214 EEAIRRAATILAEQLEAFVDLRDVRQP 240 EE + A IL + E+F+ ++ + Sbjct: 165 EEILEEAVKILKNKAESFLQQLEMIEQ 191 >UniRef50_A7M3S5 Putative uncharacterized protein n=7 Tax=Bacteroidales RepID=A7M3S5_BACOV Length = 248 Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 227 QLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE 286 + + +++ + + + E L +P+ +++T + L++ I Y+GDL+Q E Sbjct: 140 YINSVQRVKEGLEIALDNIQAEEVHYLSQPIFSMKMTPIVRSKLESHGILYVGDLIQLNE 199 Query: 287 VELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 L++ LG +L IK L G+ GM + Sbjct: 200 EYLMEIWGLGPVALERIKTKLNENGVWFGMDV 231 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMR 317 DDL ++ R N I +GDL+ +TE +LL+ +G K++ E++D L +R L + Sbjct: 1334 DDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILE 1393 Query: 318 LENWPPAS 325 E S Sbjct: 1394 PEEDEADS 1401 >UniRef50_A3CWH9 DNA-directed RNA polymerase, subunit D n=5 Tax=Methanomicrobiales RepID=A3CWH9_METMJ Length = 276 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 53/277 (19%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTK 71 + ++ AK TL G + N LRR ++S +P A+ +V I D + Sbjct: 2 EIAFSRLDERVAKFTLS----GVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEM 57 Query: 72 EGVQEDILEILLNLKGLAVRVQ--------GKDEVILTLNKSGIGPVTAADITH-DGDVE 122 + ++ + +LK R + TL+ G V ++D+ D D Sbjct: 58 LAHRLGLIPLRTDLKRYKPRSECTCEDAGCPVCTATYTLSVEGPKTVYSSDLIPQDPDAA 117 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY----S 178 + I L + + + + G G A + + + + +D Sbjct: 118 PADEKIPIIELA-RDQKLVLEAQAIVGTGKEHAKWQATTACGYKNYPVIAIDERCDGCGM 176 Query: 179 PVERIAYNVEAARVEQ----------------------------------RTDLDKLVIE 204 ++ +V + TD ++ + Sbjct: 177 CIDECPRSVLETAQGKIRVVEERQELCSLCRLCERACLAGGIGTEPAIHIGTDAERFIFV 236 Query: 205 METNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPE 241 +E +G+I E I RA + + + VD+ + E Sbjct: 237 VEGDGSIPVREIIERALQYIQKSSDDLVDVMNEITGE 273 >UniRef50_Q6VAG4 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=Q6VAG4_BACUN Length = 137 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 253 LLRPVDDLELT----VRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + + VD L+ +R + I I DL + +L++ +G KS+ EI+DVL Sbjct: 6 INQSVDTLDFGSKHGLRIQQVCRGFNIKTIRDLCKWPGRDLVRLRGIGGKSIDEIEDVLK 65 Query: 309 SRGLSLGMRLENWP 322 L LGM E Sbjct: 66 KYNLRLGMFNEELD 79 >UniRef50_B1G5N0 RNA polymerase alpha subunit domain protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G5N0_9BURK Length = 77 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 253 LLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 P+D L+L R N L + I +GDL + +LLK P G KSL E++ L G Sbjct: 10 SDAPLDLLDLNFRVTNRLASAGIFRVGDLCVCSASDLLKMPGFGVKSLQEVERSLQRAGR 69 Query: 313 SL 314 SL Sbjct: 70 SL 71 >UniRef50_C0JWW4 Alpha subunit of RNA polymerase n=1 Tax=Pycnococcus provasolii RepID=C0JWW4_9CHLO Length = 357 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 39/172 (22%) Query: 1 MQGSVTEFLK---PRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMP----- 52 ++ ++T+ + + + + ++ + N LRR+L+S P Sbjct: 31 IKKAMTQHFSNFECQKLTLHPKNEFQGTISFSDVPSHQPIRFSNFLRRVLISETPHLSLR 90 Query: 53 -GCAVT--------EVEIDGV----------------LHEYSTKEGVQEDILEILLNLKG 87 G T ID V L E G+ D+ ++ + Sbjct: 91 VGFCGTWTTDFLRQTTSIDFVYSNFFFKKRNGFRQKSLGELGYISGI--DLQDLTTQINQ 148 Query: 88 LAVRVQGKDEV----ILTLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTD 135 L + + E ++ L G G + AA + V + P V+ ++D Sbjct: 149 LPLVFTEQQEKLNKSLIRLCVQGPGQIRAAHLHFPKGVYCLTPNVVLAEISD 200 >UniRef50_A6TQ35 RNA polymerase, alpha subunit domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQ35_ALKMQ Length = 912 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 + L L+ RS N L+ E IH DL+ ++ +++ ++G KSL EI + + Sbjct: 2 HSHNYSDSISTLNLSTRSYNTLRREGIHTTNDLLNCSKDDIINFRSVGVKSLEEIVNAID 61 Query: 309 SRG-LSLGMRLEN 320 S L M EN Sbjct: 62 SLNKYKLEMYSEN 74 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 42/74 (56%) Query: 233 DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 ++ + ++ + + +++L L+VR+ NCLK+ ++ Y L+ + EL+ Sbjct: 74 NMLNKKRNHKTFVGHDGLKYIDIAIENLNLSVRAFNCLKSTSVDYYSQLIDVLDEELIAI 133 Query: 293 PNLGKKSLTEIKDV 306 PN+G+K+L E++ + Sbjct: 134 PNMGRKTLLELEHI 147 >UniRef50_UPI000197AD37 hypothetical protein BACCOPRO_01772 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AD37 Length = 251 Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%) Query: 224 LAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQ 283 +A +++ ++ + V E P L R + DL +T + L E I Y+G+L+ Sbjct: 135 MANYVDSIKSIKTGLEIAVNNIDAEEIPFLSRAITDLGITPSARERLAKEGILYVGELIH 194 Query: 284 RTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRL 318 E L+ +G ++ IK+ L + GM + Sbjct: 195 LNEDYLMDIWGVGPVTIDRIKNKLNENSVWFGMDV 229 >UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9H2_9ACTN Length = 1373 Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGL 312 DDL ++ R N I +GDLV ++E +LL+ +G K++ E++D L + L Sbjct: 1224 DDLGVSQRWTNKFSEVGIETVGDLVGKSEEDLLRIDGIGAKAIEELRDGLEAHDL 1278 >UniRef50_D1H4E8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4E8_VITVI Length = 110 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%) Query: 10 KPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVT 57 K + + + L P G T+G +RR L + G +T Sbjct: 16 KCVESRVNNKRLCYGRFILSPFIIGQADTIGIVMRRTLFGEIEGTCIT 63 >UniRef50_B4CX76 RNA polymerase alpha subunit domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX76_9BACT Length = 145 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%) Query: 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 ++P P+ DL L R AN L+ + +G+L ++L +PNLG++SL +++ Sbjct: 69 DRPSRVLPNHTPIRDLPLPTRIANGLRRMGVRTLGELTALHAEDILLSPNLGERSLDQLR 128 Query: 305 DVLASRGLSL 314 VL G SL Sbjct: 129 HVLGLIGRSL 138 >UniRef50_A3ZPK6 DNA-directed RNA polymerase, alpha subunit n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPK6_9PLAN Length = 124 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 8/108 (7%) Query: 211 IDPEEAIRRAATI-LAEQLEAFVDLRDVRQPEVKEEKPEFDPILLR-------PVDDLEL 262 I +A A I L F D+ + E K + + P+ L L Sbjct: 4 ITAAQAAMVARQIELQLAQGNFAAADDILARCLAEVKSQRRELCDEYALPREVPLARLNL 63 Query: 263 TVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + N L+ I+ +GDL T +LL PNLG+ +E++D + Sbjct: 64 EPQILNALEYCEINTVGDLQGVTYEDLLSVPNLGQSRASEVRDSVRQL 111 >UniRef50_UPI0000E87F4D hypothetical protein MB2181_05315 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F4D Length = 808 Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%) Query: 222 TILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDL 281 I + L + + + L V L+L +RS NCL++ I I DL Sbjct: 109 RIEGKALNEIEQNVEFPIGSLGSRFNMSNNKLELDVVVLDLDIRSTNCLRSRGIDKIEDL 168 Query: 282 VQRTEVELLKTPNLGKKSLTEIKDVLASR 310 ++ ++ ELL+ NLG++SL I D ++ Sbjct: 169 LKLSDTELLRIDNLGRRSLKLIIDSISKL 197 >UniRef50_B1L798 DNA-directed RNA polymerase subunit D n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L798_KORCO Length = 251 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 88/254 (34%), Gaps = 39/254 (15%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 V + ++S + LE G + N++RR +++ +P A+ EV + E Sbjct: 2 KVRVIELSDQRTLLVLE----GVSPSFANSIRRAIIAEVPTFAIDEVIFFENTTPFFD-E 56 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGI---GPVTAADIT-HDGDVEIVKPQH 128 + + I L +RV V+L L+K V + ++ D + + Sbjct: 57 YIAHRLAMIPLRTSLDVLRVDPNRTVVLELSKKAKDPIEVVYSGELKSSDPLIYPANDKI 116 Query: 129 VICHLTDENASISMRIKVQRGRGYVPAST----------RIHSEEDERPIGRLLVDACY- 177 I + + + + + GRG + E + L + Sbjct: 117 PIIKM-RKGQKLRFQAIARIGRGKDHSKWSPAAAVGYSYMPIYELKDPVECDLSQCSNCI 175 Query: 178 ---SPVERIAYNV---------------EAARVEQRTDLDKLVIEMETNGTIDPEEAIRR 219 + R+ Y V ++ +R D +++I E+ G++ PEE Sbjct: 176 ESDGGISRVDYPVLCEGCLEALERCRVRNPDKIIRRWDESRIIISYESTGSLRPEEIFSE 235 Query: 220 AATILAEQLEAFVD 233 A + +L ++ Sbjct: 236 ALNQVKGKLGELLN 249 >UniRef50_D1CF08 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 Length = 785 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 250 DPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 306 + +++L+L+ R L+ I L + T+ ELLK +GK +L EIK V Sbjct: 155 SHEVDNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGIGKAALEEIKAV 211 Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 33/87 (37%) Query: 233 DLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292 + + +Q I P+ L L++ + L+ I IGD+ L + Sbjct: 221 SIEEEKQRLDDAGIKIPGGISEHPISKLPLSMSIIHRLELAGIKTIGDITGENFSRLQEI 280 Query: 293 PNLGKKSLTEIKDVLASRGLSLGMRLE 319 P +GK + I + + S L +E Sbjct: 281 PRIGKVTAKRILEAIQSYSEQLPAEVE 307 >UniRef50_D1Z0V8 DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella paludicola SANAE RepID=D1Z0V8_METPS Length = 262 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 88/264 (33%), Gaps = 45/264 (17%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTK 71 ++I ++ AK L + F NA+RR +L+ +P A+ V+I D + Sbjct: 2 KLEILELGDRKAKFVLSEVTPAFA----NAVRRAMLADIPKMAIDYVDIYDNTSVMFDEM 57 Query: 72 EGVQEDILEILLNLKGLAVRVQGKDEVIL--------TLNKSGIGPVTAADIT-HDGDVE 122 + ++ I NL +R + + TL+ G V + D+ D D Sbjct: 58 LAHRMGLIPIKTNLDMYKLREECDCKGEGCALCQVSFTLSAEGPCMVHSRDMKSSDPDTV 117 Query: 123 IVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVER 182 I L E + + + GRG + + + + + + ++ Sbjct: 118 PADDNVPIIEL-KERQKVVLTAVARLGRGKEHSKFQPVCPPGYKYVPIIEISDKCDSCKQ 176 Query: 183 I-------AYNVEAARVEQRTDLDK-----------------------LVIEMETNGTID 212 + V+ +V + + +ET+G+ Sbjct: 177 CVEQCPRGVFAVDKNKVVVDNPYNCSMCEECLEACDLKAIKLSIDNTAFIFMVETDGSYS 236 Query: 213 PEEAIRRAATILAEQLEAFVDLRD 236 +E I RA + + A ++ + Sbjct: 237 AQEIITRAVESIRARSAALNEVLE 260 >UniRef50_C5T6I0 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6I0_ACIDE Length = 222 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 250 DPILLRPVDDLE-LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 DPIL RP+ ++ LT L A +H +GDLVQ + L++ ++ I++ L Sbjct: 138 DPILFRPISEIYELTDPVIALLVAAGVHRLGDLVQMSPTALMRIRGFDVLAMERIEEGLT 197 Query: 309 SRGLSLGMRLENWP 322 GL +GM L W Sbjct: 198 IFGLKVGMALPGWS 211 >UniRef50_A3VLF1 RNA polymerase sigma factor n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VLF1_9RHOB Length = 562 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 272 AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPA 324 E I +G VQ T ++L+ LGKKS E + L + GLSLGM L W Sbjct: 3 KEGIVLVGSFVQLTAGDILRKQGLGKKSYREARATLEALGLSLGMELCGWDEE 55 >UniRef50_UPI000197BA40 hypothetical protein BACCOPRO_01755 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197BA40 Length = 89 Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 266 SANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L I + DL ++TE EL P + K+L IKD+LA +GL GM E Sbjct: 23 IRKALMQAGIVTVEDLCRKTEEELSSIPFIKGKNLQAIKDMLAEKGLHTGMSQEE 77 >UniRef50_C5SIY2 Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIY2_9CAUL Length = 130 Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 12/74 (16%) Query: 249 FDPILLRPVDDLELTVRSANCLKAEA------------IHYIGDLVQRTEVELLKTPNLG 296 L P++ L+L R+ LK + + VQ T+ +L PNLG Sbjct: 1 MKDKLDAPIEVLKLCRRTYCALKRREAQGMHPEITYDPVLTVRQAVQLTDRDLRNMPNLG 60 Query: 297 KKSLTEIKDVLASR 310 + S+ E+KD LA+ Sbjct: 61 RVSIKELKDKLAAF 74 >UniRef50_A6C6A3 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6A3_9PLAN Length = 69 Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENW 321 ++VR+ N LK +H IGDLV+ + +LL PN G+++L E D+ L + W Sbjct: 1 MSVRTVNYLKEHKVHTIGDLVKLKQEDLLSIPNFGEQTLQECIDLFD----RLKVPNPGW 56 Query: 322 P 322 Sbjct: 57 E 57 >UniRef50_Q2NFZ6 DNA-directed RNA polymerase subunit D n=2 Tax=Methanobacteriaceae RepID=RPOD_METST Length = 270 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 52/273 (19%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE-YSTKE 72 ++I + A +E G T N +RRI L +P A+ +V I + + Sbjct: 3 IEIREKDDERAVFVVE----GVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVL 58 Query: 73 GVQEDILEILLNLKGLAVRVQGKDE---VILTLNK---------SGIGPVTAADITHD-G 119 + ++ I+ +L + + E ++ + V + D+ D Sbjct: 59 AHRLGLIPIVTDLDSYVMPSECDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDP 118 Query: 120 DVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDA---- 175 V+ V I L E + + + G G A + + + ++ +D Sbjct: 119 AVKPVYDTIPIVRL-REGEEVELEAIAELGLGSEHAKWQATTTCGYKYYPKIEIDTEKVN 177 Query: 176 ---------------------------CYSPVERIAYNVEAARVEQRTDLD--KLVIEME 206 S E D + K + ++E Sbjct: 178 DLEEYVEECPRNVLQIEDDTLVVGNIENCSTCRTCQRLSEKDDNAIVVDFEESKYIFKIE 237 Query: 207 TNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 T+G++ P + + A IL+E+ + ++ + + Sbjct: 238 TDGSLKPFDVLTIACDILSEKADNIINFVNEEE 270 >UniRef50_Q8PV16 DNA-directed RNA polymerase subunit D n=4 Tax=Euryarchaeota RepID=RPOD_METMA Length = 266 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 28/164 (17%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 VDI ++S AK L N +RR +++ +P A+ V + Y Sbjct: 4 EVDILELSDRSAKFVLS----RVSMAFANGVRRAMIADVPTLAIEYV------NLYDNTS 53 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEV----------------ILTLNKSGIGPVTAADIT 116 + ++ L + L+L L ++ LTL+ G G V + D+ Sbjct: 54 VLYDEQLALRLSLIPLVTDIETYMPQAECEVCGGEGCPACEVSLTLSAEGPGTVYSRDLI 113 Query: 117 -HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRI 159 D ++ P I L + + + G G + Sbjct: 114 SSDPKIQPADPNIPIVEL-KKGQKLVLEAIAHMGYGRDSVKWQA 156 >UniRef50_A5UN55 DNA-directed RNA polymerase subunit D n=2 Tax=Methanobrevibacter smithii RepID=RPOD_METS3 Length = 274 Score = 57.3 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 96/274 (35%), Gaps = 55/274 (20%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTK 71 ++++ + + E F NA+RR + ++P A+ +V I ++ Sbjct: 2 EIEVKSQTDDEIVFIVRDAEVPFI----NAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEV 57 Query: 72 EGVQEDILEILLNLKGL-------AVRVQGKDEVILTLNKSGIGPVTAADIT-HDGDVEI 123 + + ++ N+ + + + V+ +L + G V + D+ D ++ Sbjct: 58 LAHRLGLTPLVSNMDAIEGLPLPGDDDYEENNSVMFSLKEEGPKVVYSKDLISSDSKIKP 117 Query: 124 VKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSE-----------EDERPIGRLL 172 V + L E +++ + G G A + ++ I Sbjct: 118 VYDTIPLVKL-KEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGIDYEC 176 Query: 173 VDACYSPVER----------------------IAYNVEAARVEQRTDL--------DKLV 202 DAC V + + ++ A+ E + + + + Sbjct: 177 ADACPRGVLKSDKRSKEIKILDIEDCAMCKSCVRASIRNAQSEGKDESYINVGYHENDFI 236 Query: 203 IEMETNGTIDPEEAIRRAATILAEQLEAFVDLRD 236 +ET+G++ P+E + +A L E+ + F+ + Sbjct: 237 FRIETDGSMPPKEVLLQACDELGEKADKFIRFSE 270 >UniRef50_UPI000197BA3F hypothetical protein BACCOPRO_01754 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197BA3F Length = 146 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 + VR + I + DL +++ EL T L KKS++ I+ +L L LGM Sbjct: 18 QYGVRVQRIFQTNGIFTVRDLCSQSKQELRHTRYLSKKSISMIEKILGKYALRLGMTNNE 77 Query: 321 WPP 323 Sbjct: 78 LDE 80 >UniRef50_A9F5X1 Protein kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5X1_SORC5 Length = 1477 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 220 AATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILL-----RPVDDLELTVRSANCLKAEA 274 A + E + F + + P L PV+ L L R N L Sbjct: 756 AEQMRTEWIACFAAAPSEAGADEADGAPPVAADLSIFTEATPVEALPLGAREKNALDRSG 815 Query: 275 IHYIGDLVQRTEVELLKTPNLGKKSLTEIKD 305 I + +L+ + +L +G+++ I+D Sbjct: 816 IVTVRELLALPQNQLSAIRGVGRETARAIQD 846 >UniRef50_B1INQ5 Dna-directed rna polymerase alpha chain (Rnap alphasubunit) (Transcriptase alpha chain) (Rna polymerase subunit alpha) n=4 Tax=Clostridium botulinum RepID=B1INQ5_CLOBK Length = 69 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 + +L L++R+ N L+ I+ + DL ++ +L + +G SL +I+ L + + Sbjct: 9 LRELNLSIRAYNSLRNMGINTLEDLSMYSKKQLYQFKGIGIVSLRKIEKGLDKKNMK 65 >UniRef50_Q2SGK7 Serine/threonine protein kinase n=2 Tax=Gammaproteobacteria RepID=Q2SGK7_HAHCH Length = 1385 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 11/112 (9%) Query: 217 IRRAATILAEQLEAFVDLRDVR----QPEVKEEKPEFDPILLRPVDDLELTVRSANCLKA 272 AA +L + F+ P + + LEL+ ++ + L Sbjct: 741 FATAADMLRAWRQVFLQASKESRHPTVHGEVPTCPVEEAQQDTQIGLLELSPQALDALSR 800 Query: 273 EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPA 324 ++ + DL+++ ++ P +G K+ E+ +++ E WP Sbjct: 801 RNLNTVADLLKQNRSKVRAWPGVGIKTRNEVSELIRKL-------QEKWPNE 845 >UniRef50_C1EL51 Conserved domain protein n=81 Tax=Bacteria RepID=C1EL51_BACC3 Length = 95 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L+ + L+ IH + +L + +E E+LK +G SL +++ L GLS Sbjct: 42 LSAPARRALEHHGIHNVEELSKYSEKEILKLHGMGPASLPKLRKALEESGLSF 94 >UniRef50_B0R4Y2 DNA-directed RNA polymerase subunit D n=11 Tax=Halobacteriaceae RepID=RPOD_HALS3 Length = 248 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 78/253 (30%), Gaps = 49/253 (19%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYSTKE 72 V+ A+ + R N +RR +L +P ++ V + + Sbjct: 8 VEFVDRDDREARFVV----RNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFDE-- 61 Query: 73 GVQEDILEILLNLKGLAVRVQGK----DEVILTLNKSGIGPVTAADITH-DGDVEIVKPQ 127 ++ L L + + + V L L+ G G + D+ D +VE Sbjct: 62 -------QLGLRLGLVPLTTPEDYAAGEAVTLALDVEGPGTAYSGDLVSNDPEVEAADEN 114 Query: 128 HVICHLTDENASISMRIKVQRGRGYVPASTRIH---------------------SEEDER 166 I L D + + + G G A + ++ + Sbjct: 115 IPIIELKD-DQRLELEADAVMGHGRDHAKHQGGVAVGYRHLQRVHVVGDSPEYADDDPQM 173 Query: 167 PIGRLLVDACYSPVERI------AYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRA 220 G + D P + Y + +E V +E++G++ EE + RA Sbjct: 174 LRGVIEEDDELVPTDDFDNDLTTRYPGKEVEIEDVDG--AFVFHVESDGSMPVEELVLRA 231 Query: 221 ATILAEQLEAFVD 233 L ++ + Sbjct: 232 VDTLVDRADELEQ 244 >UniRef50_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT Length = 351 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 101/298 (33%), Gaps = 69/298 (23%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID- 62 +V LK + I +++S + L G + NALRRILL +P A+ V+I Sbjct: 56 TVENILKLIDIKINELTSDYINFDL----IGVDAAVANALRRILLVEVPTVAIETVQIYQ 111 Query: 63 --GVL------HEYSTKE-GVQEDILEIL-----LNLKG-LAVRVQGKDEVILTLNKSG- 106 GV+ H + D+++ LN K + ++ + +K+G Sbjct: 112 NSGVIQDEVLAHRLGLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECNKYDIDDKNGI 171 Query: 107 -IGPVTAADITHDGDVE------------IVKPQHVICHLTDENASISMRIKVQRGRGYV 153 + + D+ E +V P +I L I + ++G G Sbjct: 172 TSKAIYSKDLIWVPMSESQKQIFEKKPPSVVYPDILITKL-RPGQVIEAILYCEKGIGKT 230 Query: 154 PASTRIHSE-------EDERPIGRLL---------------VDA--------CYSP--VE 181 A S E + P G + D +P Sbjct: 231 HAKWSPVSTATYRLLPEFKFPEGYITGKDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCT 290 Query: 182 RIAYNVEAA--RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 +E +VE + + +E+ G+I P + ++ A IL E+ + D+ Sbjct: 291 TCRACIEKFPKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSHKINNSIDI 348 >UniRef50_B2J0X0 RNA polymerase, alpha subunit domain protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J0X0_NOSP7 Length = 258 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%) Query: 226 EQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRT 285 QL + E+ + + ++ L L + LK ++ I DL + Sbjct: 158 NQLVEVANSNVHPVEEINGDNKPNGVVDENSIESLNLKRNTYTALKDAKVNTIEDLNKYG 217 Query: 286 EVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L NLG KS+++I + L RG+ L Sbjct: 218 VTGLRTLKNLGNKSVSQIVEALLFRGIEL 246 >UniRef50_D1C976 Helix-hairpin-helix motif protein n=7 Tax=Bacteria RepID=D1C976_SPHTD Length = 72 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 262 LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 L + L + DL + TE +LL+ +G K+L ++++ LA+RGL+ ++ Sbjct: 14 LAQPARRALLGAGYTRLEDLTRVTEDQLLQLHGIGPKALAQLREALAARGLAFAADTDD 72 >UniRef50_Q8TVB8 DNA-directed RNA polymerase subunit D n=1 Tax=Methanopyrus kandleri RepID=RPOD_METKA Length = 275 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 44/234 (18%) Query: 41 NALRRILLSSMPGCAVTEVEIDG---------VLHEYSTKEGVQEDILEILL-NLKGLAV 90 N +RR L + +P + EV I + H +DI + L +L Sbjct: 32 NTIRRALYTLVPTLRIEEVIIYENDTPMYDEMLAHRLGLIPLRVDDIDQFELPDLCDCGG 91 Query: 91 RVQGKDEVILTLNKSGIGPVTAADITHD-GDVEIVKPQHVICHLTDENASISMRIKVQRG 149 + K +V L G V A D+ D DVE P +I E+ I + + G Sbjct: 92 KGCEKCQVRAELEVEGPTKVYARDLKFDHPDVEPAFPDTLI-TEVGEDQRIRLEVIAVPG 150 Query: 150 RGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN-------VEAARV---------- 192 G A + S + + L +D ++I Y +E V Sbjct: 151 LGLEHAKWKPVSAVGYKGLPELEIDEDKLKEKKITYECPQGIIRIENGEVVHIDEDRLPE 210 Query: 193 -------EQRTD--------LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 E+ TD D V +ET+G++ + AI +A + +LE+ Sbjct: 211 CRMYKEYERETDGAVRVRLRDDAFVFNVETDGSMSLDTAILKALDAIEHKLESL 264 >UniRef50_C6J496 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J496_9BACL Length = 64 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%) Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 L+ + L+A + + L + +E E+L+ +G S+ ++K+ L S+GL+ Sbjct: 9 RLSAPARRALEANGVTTLEKLAELSEQEVLRFHGMGPASIPKLKEALRSKGLTF 62 >UniRef50_A8SD09 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD09_9FIRM Length = 1010 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 + + L+ R+ N L I + L + +E EL LG K+L EI Sbjct: 1 MSDLLLASTNLSTRAINILARNNILTLSQLKECSEKELRSMRGLGGKTLDEI 52 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%) Query: 241 EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 V + + + +++++ R + L I LV+ + KT N+G+K++ Sbjct: 76 CVALTPEILNSLSYHQITEIDMSARGFHYLTLMGCTTIAQLVRLKREDFQKTANIGEKTI 135 Query: 301 TEIKDVLASRGLSLGMRLEN 320 I++ L G + Sbjct: 136 EIIEESTKKWLLENGYYGDG 155 >UniRef50_C7DIN8 RNA polymerase insert n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIN8_9EURY Length = 191 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 43/225 (19%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 +++ + + L+ + NALRRI ++ + A+ +V + Y Sbjct: 2 EIEVLRDDDKVFEFVLKGATANYA----NALRRIAINGIKAFAIDKVTV------YENTS 51 Query: 73 GVQEDILEILLNLKGLAV--RVQGKDEVILTLNKSGIGPVTAADIT-HDGDVEIVKPQHV 129 + ++ + + L L KDE++ TL +G G + + + D V + P Sbjct: 52 SMFDEYIAHRIGLVPLITPHGSSDKDEILFTLEAAGPGTIYSKSLESSDKSVVVANPNIP 111 Query: 130 ICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEA 189 I L + I + K G A + + Y Sbjct: 112 IIKL-GRDQKIRIEGKAVMGSALKHAKFQPGL---------------------VTY---- 145 Query: 190 ARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDL 234 + T D+ +ET G + P + I +A + E ++ F + Sbjct: 146 ----EATADDEFKFYVETFGQMPPRDIIIKACDAIKENMKEFSKV 186 >UniRef50_A3MXZ5 DNA-directed RNA polymerase subunit D n=2 Tax=Thermoproteaceae RepID=RPOD_PYRCJ Length = 258 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 91/263 (34%), Gaps = 45/263 (17%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHE-YSTK 71 V I + S AK +E G +L N+LRR+++S +P A+ V + Y Sbjct: 3 KVSIVEKSQFFAKAVVE----GVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEM 58 Query: 72 EGVQEDILEILLN--LKGLA--------VRVQGKDEVILTLNKS--GIGPVTAADITHD- 118 + + I L LK L + + V LTL + G V A D+ D Sbjct: 59 --LAHRLGLIPLTTPLKDLPPIEDCESGLVDPSECTVRLTLQVNATGDVVVYAGDLVADR 116 Query: 119 GDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRL------- 171 DV V I L E S+ + + GR A + + Sbjct: 117 PDVAPVYKDIPIVKLV-EGQSVVVEAYAKLGRARDHAKWQAALASYYYYPKVVVKREECR 175 Query: 172 ------------LVDACYSPVERIAYNVEAARVEQ--RTDLDKLVIEMETNGTIDPEEAI 217 ++ ++ + E + DK V +E+ G D E A+ Sbjct: 176 EMCKEVCRNLENPLECTFN---KATTCKEMCGGGIVVEWEKDKYVFWIESFGNYDAETAL 232 Query: 218 RRAATILAEQLEAFVDLRDVRQP 240 R A IL ++ E F+D + Sbjct: 233 REAFRILKKKFEDFLDALSRKAE 255 >UniRef50_D1VQ00 Putative uncharacterized protein n=1 Tax=Frankia sp. EuI1c RepID=D1VQ00_9ACTO Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 8/132 (6%) Query: 199 DKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVD 258 D+ E+ G + E + + A+Q+ + V + E E PV Sbjct: 23 DRAGDEVTLYGLVRAREVLVLGQSQFADQVREVLRAGQVPGWGLHELPAERA-----PVS 77 Query: 259 DLE--LTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 L L+VR+AN LK + ++ + L + LG + L EI+ LA L+ Sbjct: 78 ALYALLSVRTANILKRAPFLFAQEVAALPDEVLREFRGLGPRVLAEIRAALADPALA-NF 136 Query: 317 RLENWPPASIAD 328 R++ P S A Sbjct: 137 RIDLASPESDAS 148 >UniRef50_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2 Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO Length = 346 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 72/299 (24%) Query: 4 SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-- 61 S+ +F + + VS L +G + NALRRIL+S +P A+ V+I Sbjct: 51 SIDKFCERTSLKFLSVSPERVVFEL----KGVDAAIPNALRRILISEVPTVAIETVQIWQ 106 Query: 62 -DGVL------HEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKS------GIG 108 GV+ H + + LN + V ++ + ++L+ G Sbjct: 107 NTGVVQDEVLAHRLGLIPFIVDPT---ALNYRQPNQEVTDENALRVSLHVKCTEQSLGPH 163 Query: 109 P----VTAADITH----DGDVE--------IVKPQHVICHLTDENASISMRIKVQRGRGY 152 V A I E V P +I L I ++ +++G G Sbjct: 164 QTSLPVYAKHIKWEPMSPSQKEAFAANPPRAVHPDILITKL-RPGQEIELKAYLEKGVGK 222 Query: 153 VPASTRI------HSEEDERPIGRLL-VDAC--YSPVERIAYNVEAA------------- 190 A E + + DA S +++E Sbjct: 223 THAKWSPVCTAVYRLEPEIVFKESIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCT 282 Query: 191 -----------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238 +E R D + +E+ G++ + A IL E+ F + D++ Sbjct: 283 TCRACIERFPKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEKALTFRQIIDLK 341 >UniRef50_A2BK79 DNA-directed RNA polymerase subunit D n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BK79_HYPBU Length = 281 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 74/279 (26%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE-IDGVLHEYSTKEGV 74 I ++ +E GFG L NA+RR S +P AV VE + Y + Sbjct: 6 ILDKDRLTIRLYVE----GFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEI--I 59 Query: 75 QEDILEILLNLKGLAVRVQGKDE------------VILTLNKS-GIGP---VTAADITH- 117 + I L K + + +E V+L L G V + D+ Sbjct: 60 AHRLGLIPLTSKEALQKYKRPEECEKAELGDPSCYVVLRLEVETGPREERIVYSGDLETS 119 Query: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHS---------------- 161 D DV V I + + + ++ + G G A S Sbjct: 120 DPDVRPVYDNMPIV-VMAPDQRLRLQAYARLGYGREHAKWMPVSVAAHRYLPILEFNLDE 178 Query: 162 ------------------EEDERPIGRLLVDACYSPVERIA----YNVEAARVEQRT--- 196 + E G + V VE + Y R + Sbjct: 179 MSDECIRCIESGYPELAAKIREMRSGSIAV------VEDVNTSGLYWCVQRRCGGKGVKL 232 Query: 197 --DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 D + ++++E+ G + PE+ +R AA + + E + Sbjct: 233 VYDDKRFILKIESTGALPPEDIVREAARAIVRKAENLLS 271 >UniRef50_A8H4Z2 RNA polymerase sigma factor n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H4Z2_SHEPA Length = 930 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%) Query: 249 FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308 +L +P+++L L VR N + DL T+ +L PN G+KS ++ +L Sbjct: 277 PFSLLEKPLEELNLPVRLFNVFNVNGFTSLNDLKDITDKTMLSWPNFGRKSARDLYSLLL 336 Query: 309 SRGLSLGMRLENWPPASIADE 329 +L+ + + + Sbjct: 337 EIISRKQSKLDAFLNSDASQN 357 >UniRef50_Q01V32 RNA polymerase, alpha subunit domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01V32_SOLUE Length = 130 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 234 LRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVEL-LKT 292 +R + L V+DL L+VR+ N L+A + +++ +L Sbjct: 1 MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLAL---DLGSSV 57 Query: 293 PNLGKKSLTEIKDVLASRGLS 313 LG+K+ E+ L +G Sbjct: 58 RGLGRKTKEELLVALELKGFR 78 >UniRef50_UPI00016C679A hypothetical protein CdifQCD-7_20312 n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C679A Length = 70 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 258 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 + L+L+ + N L I I L T +LLK +G KSL EIK L+ Sbjct: 2 NQLKLSKKIVNHLIKANIDSIESLKTMTSNDLLKINGIGPKSLEEIKQALSLL 54 >UniRef50_C4R7L2 RNA polymerase II third largest subunit B44, part of central core n=3 Tax=Saccharomyceta RepID=C4R7L2_PICPG Length = 304 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 40/243 (16%) Query: 37 HTLGNALRRILLSSMPGCAVTEVEI---------DGVLHEYSTKEGVQEDILEILLNLKG 87 +L N+LRR +L+ +P A+ VEI + + H V ED+ E+ + Sbjct: 26 LSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISHRLGLIPLVSEDVEEMKYSRDC 85 Query: 88 LAVRVQGKDEVILTLNK-----SGIGPVTAADITH---DGDVEIVKP------QHVI--C 131 + V+L L+ G V ++ + G++ + +P I C Sbjct: 86 TCEDYCDECSVVLELSARHEGEEGTTDVYSSSLIKVSGPGNLNVGEPVRRDDYDQGILLC 145 Query: 132 HLTDENASISMRIKVQRGRGYVPAST---------RIHSEEDERPIGRLLVDACYS-PVE 181 L + +++R ++G A + + VDA P Sbjct: 146 KLRNHQ-ELNIRCIAKKGIAKEHAKWSPCSAIAFEYDPHNKLKHTDFWFEVDAKKEWPDS 204 Query: 182 RIAYNVEAARVEQRTDLD----KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDV 237 + A E + + D + + +ET G++ + R L E+L + + Sbjct: 205 KYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKANQVFSRGIKTLQEKLANVLFELEN 264 Query: 238 RQP 240 +P Sbjct: 265 SRP 267 >UniRef50_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum RepID=RPB3_DICDI Length = 302 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 92/295 (31%), Gaps = 70/295 (23%) Query: 1 MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 M +V++ + ++I ++ + L ++ NALRR++++ +P + VE Sbjct: 1 MSQTVSQLTRQPELEILEIKNDSIIFILS----NTDISVANALRRVMIAEVPTMCIDLVE 56 Query: 61 IDG---------VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKS----GI 107 + + H V ++I + + V L LN Sbjct: 57 FESNNSVLCDEFIAHRLGLIPLVSDNIDKFCYTRDCSCSDRCDQCSVELRLNVKCTENRP 116 Query: 108 GPVTAAD--------ITHDGDVEIVKPQHVICHLT-DENASISMRIKVQRGRGYVPASTR 158 VT++D I V + I + I +R ++G G A Sbjct: 117 RDVTSSDLLSQNSAVIPVSSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWS 176 Query: 159 IHSEEDERPIGRLLVDAC-----------------------YSPVE-----------RIA 184 + ++++ YSP + R Sbjct: 177 PSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCV 236 Query: 185 YNVE----------AARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 229 Y +E V DK + +E++G + PE+ + A I+ +L Sbjct: 237 YCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLT 291 >UniRef50_D0TJA1 Predicted protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TJA1_9BACE Length = 193 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVE----LLKTPNLGKKSLTEIKDVLASRGL 312 V D +L R+ N L+ I+ + DL++ T+ + LLK G SL +K+ L +G+ Sbjct: 120 VSDFDLDTRTINMLRKMEIYTLEDLLRYTKDKGLQVLLKYRGFGAHSLALLKESLIKKGV 179 >UniRef50_O28002 DNA-directed RNA polymerase subunit D n=3 Tax=Archaeoglobaceae RepID=RPOD_ARCFU Length = 264 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 17/179 (9%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 ++I + K L + L N+ RR + + +P AV V+I + E Sbjct: 4 EIEILEEKDFKIKFIL----KNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYD-E 58 Query: 73 GVQEDILEILLNLKGLAVRVQGKDE----------VILTLNKSGIGPVTAADITH-DGDV 121 + + + + +Q + + LN G V + D D DV Sbjct: 59 VIAHRLAMLPIKTYLDRFNMQSECSCGGEGCPNCQISFRLNVEGPKVVYSGDFISDDPDV 118 Query: 122 EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 180 + L E + + + G G A + S + I ++V+ + Sbjct: 119 VFAIDNIPVLELF-EGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVVNENCNGC 176 >UniRef50_D1J901 Putative DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured archaeon RepID=D1J901_9ARCH Length = 213 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 59/237 (24%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKE 72 V I + L G NALRR++++ +P A+ E+ I Sbjct: 2 EVKIADRGEKEVVIALS----GVKVRFANALRRVMIAEVPKLAIDELNIRENTSLLYD-- 55 Query: 73 GVQEDILEILLNLKGLAVR-----VQGKDEVILTLNKSGIG-----PVTAADITHD-GDV 121 ++ L L + ++ + +D++ LTL + V + ++ V Sbjct: 56 ------EQLALRLALVPLKTDLKDYKEEDQITLTLKATSPEKAGHTMVYSKELISSYPKV 109 Query: 122 EIVKPQHVICHLTD-----------ENASISMRIKVQRGRGYVPASTRIHSEEDERPIGR 170 E I L I + + GRG A + Sbjct: 110 EAASENIPIVKLISTEREIGAIKTVARQKIDLDAIARWGRGEEHAKWQ------------ 157 Query: 171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQ 227 PV Y + L+ +E++G + +E I AA I+ E+ Sbjct: 158 --------PVTICGYKNISDEDVNN-----LLFTVESDGALPVDEIILEAARIMQEK 201 >UniRef50_D2S452 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S452_9ACTO Length = 178 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 256 PVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 V DL L R+ L I L T EL+ LG S+ I+ V+ Sbjct: 13 TVSDLGLPTRAVTALARAGITTTAQLAALTRAELVAVNGLGPGSIAAIRRVVPE 66 >UniRef50_A0B9L4 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosaeta thermophila PT RepID=A0B9L4_METTP Length = 264 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 78/263 (29%), Gaps = 50/263 (19%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID-GVLHEYSTKE 72 V++ ++ + L G NA+RR ++ +P A+ E+ I + E Sbjct: 3 VELIELRDDRVRF----LLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFD--E 56 Query: 73 GVQEDILEILLNLKGLAVRVQGKDEVIL-----------TLNKSGIGPVTAADITH-DGD 120 + + + + L+V + L G V + DI D Sbjct: 57 QIALRLGLVPIRADDLSVYSTPDECQCGGIGCPGCRIDFMLTAEGPATVHSRDIKFSDPS 116 Query: 121 VEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHS--EEDERPIGRLLVDACYS 178 V + + E + + G A + + P + Sbjct: 117 VRAAFDNIPLV-VLGEGEKLVIEGFATLRTGKEHAKWQAGTLCGYKNLPSIEISGCNNCG 175 Query: 179 PVERI-------------------------AYNVEAA---RVEQRTDLDKLVIEMETNGT 210 ++ VE + D ++ +E++G+ Sbjct: 176 RCVKVCPRGVLVLDENDSIKVRDITECSLCRLCVEECDQRAISVVPLEDAFIMSIESDGS 235 Query: 211 IDPEEAIRRAATILAEQLEAFVD 233 I+ ++ +R AA L ++ A D Sbjct: 236 INAKDLVRMAAEELKKKALALQD 258 >UniRef50_Q8SL94 DNA-directed RNA polymerase subunit alpha n=1 Tax=Euglena anabaena RepID=RPOA_EUGAN Length = 207 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 67/190 (35%), Gaps = 37/190 (19%) Query: 19 VSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEV-----------EIDGVLHE 67 + + ++ +G +RR L+ G +T+ ++ L+E Sbjct: 15 KNKKYNLFKIKTNRDFNPLVIGTKIRRNLIKETKGTKITQASLFVLNKKSKEKLYHSLNE 74 Query: 68 YSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKS-GIGPVTAADITHDGDVEIVKP 126 ++ E + E EI+ NL+ L +++ K+ + + +I ++I Sbjct: 75 FTNIEEISEKTNEIIKNLERLKIKLVNKNLKKKIICITLTKENSFFKEIY--KTIKISNL 132 Query: 127 QHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYN 186 IC + N I + +K+++ +G ++P+E I + Sbjct: 133 NQKICTIKSHNVEIKLLLKIEKEKGIK-----------------------FNPIETINFI 169 Query: 187 VEAARVEQRT 196 + E + Sbjct: 170 IPKKNNENNS 179 >UniRef50_P37382 DNA-directed RNA polymerase II subunit RPB3 n=5 Tax=Ascomycota RepID=RPB3_SCHPO Length = 297 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 91/281 (32%), Gaps = 47/281 (16%) Query: 14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEYSTKEG 73 + I +S L + N+LRR++L+ +P A+ VEI V E Sbjct: 7 ITIRNISKNSVDFVL----TNTSLAVANSLRRVVLAEIPTVAIDLVEI-NVNTSVMPDEF 61 Query: 74 VQEDILEILLNLKGL---------------AVRVQGKDEVILTLNKS----GIGPVTAAD 114 + + I L+ + + K V L LN G + A D Sbjct: 62 LAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARD 121 Query: 115 ITHDGDVEIVKPQH--------VICHLTDENASISMRIKVQRGRGYVPASTRIHS----- 161 + + + P +IC L E IS+R ++G A S Sbjct: 122 LVVSSNSSLGHPILADPKSRGPLICKLRKEQ-EISLRCIAKKGIAKEHAKWSPTSAVAFE 180 Query: 162 ----EEDERPIGRLLVDACYS-PVERIAYNVEAARVEQRTDLD----KLVIEMETNGTID 212 + + DA P + A E R + + + +++E+ G+I Sbjct: 181 YDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIP 240 Query: 213 PEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPIL 253 P E + + IL E+L V D QP Sbjct: 241 PNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEEN 281 >UniRef50_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DHI5_LACTC Length = 328 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 31/170 (18%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---------DG 63 V I + + + L T+ N+LRR++++ +P A+ VE+ + Sbjct: 7 QVKIREATKDNVDFILS----NVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEF 62 Query: 64 VLHEYSTKEGVQEDILEILLNLKGLAVRVQGKD-EVILTLNKSGIGP----VTAADITHD 118 + H DI +++ + V+LTL G V A D+ Sbjct: 63 ISHRLGLIPLQSSDINDLIY-CRDCYCEDHCDRCSVVLTLQAVGESESTTNVYAKDLVIV 121 Query: 119 GDVE--------IVKPQ---HVICHLTDENASISMRIKVQRGRGYVPAST 157 ++ I +IC L + + ++ ++G A Sbjct: 122 SNLMGRNIGHPIIQDKDGNGVLICKL-RKGQELKLKCVAKKGISKEHAKW 170 >UniRef50_Q5CPY6 RNA polymerase III C5 subunit n=2 Tax=Cryptosporidium RepID=Q5CPY6_CRYPV Length = 344 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 94/294 (31%), Gaps = 76/294 (25%) Query: 2 QGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI 61 + +V E ++ + + ++ S + + G ++ NALRRILL +P A+ V+I Sbjct: 45 KQTVEEIIETIDIKVNELKSDYINFDIS----GIDASIANALRRILLVEIPTVAIETVQI 100 Query: 62 D---GVL------HEYSTKE-GVQEDILEIL-----LNLKG-LAVRVQGKDEVILTLNKS 105 GV+ H + + +E LN K + ++ K ++ Sbjct: 101 YQNNGVIQDEVLAHRLGLIPMLIDPNTIEFRNEDEDLNEKNSVCFKLNVKCTKDDINHEK 160 Query: 106 G--IGPVTAADITHDGDV------------EIVKPQHVICHLTDENASISMRIKVQRGRG 151 G + + D+ ++V +I L SI + ++ G Sbjct: 161 GITSKAIYSKDLVWIPLSDNQRKKFGKTPPKVVTDDILITKL-RPGQSIEAILYCEKNIG 219 Query: 152 YVPAST-----------------------------------RIHSEEDERPIGRLLVDA- 175 V A + ++ + + Sbjct: 220 RVHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVFDIEDVTGNAVPTNPR 279 Query: 176 CYSPVERIAYNVEAARVEQRTDLDK--LVIEMETNGTIDPEEAIRRAATILAEQ 227 + +E + + DK + +ET G I P E ++ A IL ++ Sbjct: 280 NCTTCRAC---IEKFPNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKK 330 >UniRef50_A0JVH2 Putative uncharacterized protein n=2 Tax=Arthrobacter RepID=A0JVH2_ARTS2 Length = 72 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 254 LRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLS 313 P+ + + + + + +VQ + ELLK +G K++ +++D + GL Sbjct: 10 HTPIPR-GIGAPARRAMAHAGLETLEQVVQFGQRELLKLHGMGVKTMAQLEDAMDEHGLE 68 Query: 314 L 314 Sbjct: 69 F 69 >UniRef50_C7RJ33 Serine/threonine protein kinase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ33_9PROT Length = 1413 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 214 EEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAE 273 E A +L + + F + E + +L+ +V + N L Sbjct: 765 RERFDNAEDMLRDWRKIFDQADTQTAADPFEVIALRATR-ETAIGELDYSVEAQNVLDRM 823 Query: 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 304 IH + +L+ V ++G K EI+ Sbjct: 824 GIHSVRELLAVDRVRFRYLKSVGDKVRKEIR 854 >UniRef50_C1F696 Transcription termination factor NusA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F696_ACIC5 Length = 548 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%) Query: 257 VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGM 316 V +L + L A I + L T +L + P +G+K+L +I + G Sbjct: 370 VKELGES--IIQKLVAAGITTVESLADMTPEQLEEIPGIGEKTLEKISTAVRHY---FGQ 424 Query: 317 RLENWPPASIAD 328 ++ + Sbjct: 425 YEPGEERPAVPE 436 >UniRef50_B0SFJ1 Putative uncharacterized protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SFJ1_LEPBA Length = 67 Score = 47.3 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 I + DL + ++ +LL+ G SL +++ L G+ L Sbjct: 25 GITKLEDLSRYSKQDLLRLHGFGPSSLPKLESELRKLGIQL 65 >UniRef50_C6Z4I8 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=C6Z4I8_9BACE Length = 226 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 242 VKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTE----VELLKTPNLGK 297 ++ E +L+ P+ +L++ R L+ I+ + DL++ + L + P +G Sbjct: 137 EQDIPSECVDLLVTPLGNLDINFRVLRALRKYNIYQLEDLLRFIKYNGFDALCRIPGMGM 196 Query: 298 KSLTEIKDVLASRGL 312 KS+ ++ L R + Sbjct: 197 KSVEQLYHTLKERNI 211 >UniRef50_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2F4R6_TRIVA Length = 322 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 85/299 (28%), Gaps = 87/299 (29%) Query: 16 IEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---------DGVLH 66 + +S + L + R F NALRR++++ +P AV VE + + H Sbjct: 17 VTAKTSNSIEFRLMNVSRHFA----NALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72 Query: 67 EYSTKEGVQEDILEIL----LNLKGLAVRVQGKDEVILTLNKS-GIG-----PVTAADIT 116 + V ED + N G + VI T++ VT+ D+ Sbjct: 73 RLALIPFVSEDADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDLK 132 Query: 117 HDG---------------DVEIV--------KPQHVICHLTDENASISMRIKVQRGRGYV 153 V+ PQ V ++ + +++G G Sbjct: 133 LIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIGRN 192 Query: 154 PASTRIHSEEDERPIGRL--------LVD--------------------------ACYSP 179 A + + ++D A + Sbjct: 193 HAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVVASCPKKCLKMGLDDNIQVANFED 252 Query: 180 VERIAYNVEAARVEQRTD-------LDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 + A V D V +ET G++ PE + R L +L+ F Sbjct: 253 CTFCNQCIRTAEVHGHKDAIVIQSKRGLFVFNVETIGSLSPENVVTRGFQALTNKLDQF 311 >UniRef50_Q9YB53 DNA-directed RNA polymerase subunit D n=1 Tax=Aeropyrum pernix RepID=RPOD_AERPE Length = 286 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 62/287 (21%) Query: 12 RLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI-DGVLHEYST 70 R V++ ++ S ++ + RG+ NA+RR +LS +P AV I D Y Sbjct: 7 RSVEVVELDSLRVRLRI----RGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDE 62 Query: 71 KEGVQEDILEILLNLKGLAVRVQGKDEV----------------ILTLNKSGI--GPVTA 112 V + ++L+ + + +E ++ G +TA Sbjct: 63 M--VAHRLGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITA 120 Query: 113 ADI-THDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRL 171 D+ D V+ V P+ + ++ I ++ + GRG S R L Sbjct: 121 GDLSISDPQVKPVYPETPLIYVA-PGQRIHVQAFARLGRGKEHTKWSPASLSVLRYTPIL 179 Query: 172 LVDACYSP--VERI--AY--NVEAARVEQRT----------------------------- 196 + D+ + AY VEA + + Sbjct: 180 IYDSSKAGDECLECLSAYPQVVEALKSGGKGSLVLEGLRRTSGLRYCAETACRGAVEVRY 239 Query: 197 DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVK 243 D L +E+E+ G + PE+ + A L E+++ F + + E Sbjct: 240 DSSNLDLEVESTGALRPEKIVELAIRELEEKVKRFAEAVESVGVEES 286 >UniRef50_B0SH17 Transcription elongation factor n=6 Tax=Leptospira RepID=B0SH17_LEPBA Length = 466 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 210 TIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANC 269 + + E + R E +E D + + +EE F P+ P LT R Sbjct: 363 SPEAREKLDRLFNAQQEAMEESEDGYNQSGQDEEEEDSGFTPLSEIP----GLTPRIVGL 418 Query: 270 LKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 L+A I + L++ ++ EL K +GK + +I +L Sbjct: 419 LEAGGIKNVETLLEFSQEELSKISGIGKTTAEQILRLLRE 458 >UniRef50_D1R556 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R556_9CHLA Length = 422 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 252 ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 L P+ L L+ + CL+ I DL++ +L+ +G+ + EI+ L Sbjct: 133 FLDEPIHILGLSQHAEKCLEKNGKCLIQDLLKADTQDLIFLKGMGQGHIDEIQQTLKKY 191 >UniRef50_A3DMQ6 DNA-directed RNA polymerase, subunit D n=2 Tax=Desulfurococcaceae RepID=A3DMQ6_STAMF Length = 280 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 94/275 (34%), Gaps = 59/275 (21%) Query: 13 LVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI---------DG 63 +++ + + ++ ++ + + N++RR +++ +P A+ V + Sbjct: 2 EINVLEKTPLRLRLYIKDIPLH----VLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEY 57 Query: 64 VLHEYSTKEGVQEDILEILLN---LKGLAVRVQGKDEVILTLNKSGIGP----VT--AAD 114 + H E L+ + + R ++ + L+ G G VT + D Sbjct: 58 IAHRLGLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGD 117 Query: 115 ITH-DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLV 173 + D DV+ V I + +N I + + GRG A S + I + + Sbjct: 118 LKTSDPDVKPVYDNIPII-VLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADIYI 176 Query: 174 D------------ACYSPVERIAYNVEAARVEQRTDLD---------------------- 199 D P +++ V D Sbjct: 177 DEKKCLGENCKKCIEVCPRNILSFENGKIIVNTNKIFDCSLCRICEEYCPTDAIRVGWRE 236 Query: 200 -KLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233 + ++ +E+ G++ P+ + A IL +++ F++ Sbjct: 237 NEYILTIESTGSLPPKRILIEAVKILENKIDDFIE 271 >UniRef50_D1SHQ1 Putative uncharacterized protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SHQ1_9ACTO Length = 64 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 261 ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +++ + L A + L EL + +G K+L I+ L L L Sbjct: 10 KISAPATRALTAAGYTTLRQLAGVPRAELARLHGMGPKALGVIEAALDEHDLRL 63 >UniRef50_Q49ZY1 Putative uncharacterized protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49ZY1_STAS1 Length = 197 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 25/64 (39%) Query: 255 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSL 314 +D ++ + N L + + D+ LL +G K++ ++D L ++ Sbjct: 1 MTIDLPKIGKPATNALHHIGVKTLEDIAGYDRTTLLAIHGVGPKAMDILEDNLKKHNMNF 60 Query: 315 GMRL 318 + Sbjct: 61 KEDI 64 >UniRef50_D1VE21 Serine/threonine protein kinase n=1 Tax=Frankia sp. EuI1c RepID=D1VE21_9ACTO Length = 1583 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%) Query: 232 VDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK 291 V + D + P+D L+ R+ + +GDL+ E++ Sbjct: 868 VAMADEETARRARDAAAAAATSDTPLDAAGLSPRAVSAAHRLNATTVGDLLTLGSKEIIS 927 Query: 292 TPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE 329 P G K+ E++ + SL P A+ A + Sbjct: 928 LPGTGAKTRQELQSRIRQWRRSLAAAPAGTPSAATAAQ 965 >UniRef50_A5EC86 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EC86_BRASB Length = 88 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 244 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEI 303 P + P+ ++EL +R L A + IG++ + + E+L+ +LG SL + Sbjct: 1 MIDPSPELPDDTPILNVELPLRVREALVAAGLTTIGEIRETPDKEILRIQHLGTSSLALL 60 Query: 304 KDVLASRGL--SLGMRLENWPPASIADE 329 + L GL S+G+R + P + A++ Sbjct: 61 RKTL---GLPSSVGVRGDAVPMPTKAED 85 >UniRef50_D1C4N8 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4N8_SPHTD Length = 193 Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 230 AFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVEL 289 V + + V+E + L P+++L+L+ R L +H I + + E L Sbjct: 69 LIVSVPVLIIATVEELWRQVRCRLQPPIEELDLSPRVLRLLHRYGLHTIAAVERVDEATL 128 Query: 290 LKTPNLGKKSLTEIKDVLA 308 + PN ++ E+ ++ Sbjct: 129 MLLPNFDARARHEVLRAIS 147 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.144 0.382 Lambda K H 0.267 0.0438 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,077,969,762 Number of Sequences: 3077464 Number of extensions: 93115867 Number of successful extensions: 282719 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 594 Number of HSP's successfully gapped in prelim test: 107 Number of HSP's that attempted gapping in prelim test: 280479 Number of HSP's gapped (non-prelim): 881 length of query: 329 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 200 effective length of database: 643,403,500 effective search space: 128680700000 effective search space used: 128680700000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 93 (40.3 bits)