Phyre 2 Results for P77044

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Email | l.a.kelley@imperial.ac.uk
Description | P77044
Date | Thu Jan 5 12:25:30 GMT 2012
Unique Job ID | 5911fb25819b226b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1u2eA_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:2-hydroxy-6-ketonona-2,4-dienedioic acid PDBTitle: crystal structure of the c-c bond hydrolase mhpc
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
286 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | E | K | M | M | S | Y | Q | P | Q | T | E | A | A | T | S | R | F | L | N | V | E | E | A | G | K | T | L | R | I | H | F | N | D | C | G | Q | G | D | E | T | V | V | L | L | H | G | S | G | P | G | A | T | G | W | A | N | F | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | N | I | D | P | L | V | E | A | G | Y | R | V | I | L | L | D | C | P | G | W | G | K | S | D | S | V | V | N | S | G | S | R | S | D | L | N | A | R | I | L | K | S | V | V | D | Q | L | D | I | A | K | I | H | L | L | G | N | S | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | G | H | S | S | V | A | F | T | L | K | W | P | E | R | V | G | K | L | V | L | M | G | G | G | T | G | G | M | S | L | F | T | P | M | P | T | E | G | I | K | R | L | N | Q | L | Y | R | Q | P | T | I | E | N | L | K | L | M | M | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | I | F | V | F | D | T | S | D | L | T | D | A | L | F | E | A | R | L | N | N | M | L | S | R | R | D | H | L | E | N | F | V | K | S | L | E | A | N | P | K | Q | F | P | D | F | G | P | R | L | A | E | I | K | A | Q | T | L | I | V | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | .
Sequence |  | G | R | N | D | R | F | V | P | M | D | A | G | L | R | L | L | S | G | I | A | G | S | E | L | H | I | F | R | D | C | G | H | W | A | Q | W | E | H | A | D | A | F | N | Q | L | V | L | N | F | L | A | R | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1u2eA_ |

### PDB 1u2e chain A

Region: 8 - 293
Aligned: 286
Modelled: 286
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: A: PDB Molecule:2-hydroxy-6-ketonona-2,4-dienedioic acid
PDBTitle: crystal structure of the c-c bond hydrolase mhpc

Phyre2
2 |
| d2rhwa1 |

### PDB 2rhw chain A domain 1

Region: 11 - 292
Aligned: 281
Modelled: 281
Confidence: 100.0%
Identity: 51%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Carbon-carbon bond hydrolase

Phyre2
3 |
| c1cr6A_ |

### PDB 1cr6 chain A

Region: 12 - 291
Aligned: 273
Modelled: 278
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor

Phyre2
4 |
| c2vf2A_ |

### PDB 2vf2 chain A

Region: 11 - 291
Aligned: 279
Modelled: 281
Confidence: 100.0%
Identity: 40%
PDB header:hydrolase
Chain: A: PDB Molecule:2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
PDBTitle: x-ray crystal structure of hsad from mycobacterium2 tuberculosis

Phyre2
5 |
| c3kdaB_ |

### PDB 3kda chain B

Region: 9 - 292
Aligned: 275
Modelled: 283
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:cftr inhibitory factor (cif);
PDBTitle: crystal structure of the cftr inhibitory factor cif with the h269a2 mutation

Phyre2
6 |
| d1uk8a_ |

### PDB 1uk8 chain A

Region: 15 - 292
Aligned: 265
Modelled: 277
Confidence: 100.0%
Identity: 32%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Carbon-carbon bond hydrolase

Phyre2
7 |
| d1hkha_ |

### PDB 1hkh chain A

Region: 19 - 292
Aligned: 270
Modelled: 274
Confidence: 100.0%
Identity: 19%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloperoxidase

Phyre2
8 |
| d1brta_ |

### PDB 1brt chain A

Region: 18 - 292
Aligned: 271
Modelled: 275
Confidence: 100.0%
Identity: 18%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloperoxidase

Phyre2
9 |
| d1b6ga_ |

### PDB 1b6g chain A

Region: 14 - 292
Aligned: 276
Modelled: 279
Confidence: 100.0%
Identity: 20%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloalkane dehalogenase

Phyre2
10 |
| c3oosA_ |

### PDB 3oos chain A

Region: 16 - 290
Aligned: 266
Modelled: 274
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha/beta hydrolase family protein;
PDBTitle: the structure of an alpha/beta fold family hydrolase from bacillus2 anthracis str. sterne

Phyre2
11 |
| d1c4xa_ |

### PDB 1c4x chain A

Region: 16 - 291
Aligned: 275
Modelled: 276
Confidence: 100.0%
Identity: 26%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Carbon-carbon bond hydrolase

Phyre2
12 |
| c3u1tA_ |

### PDB 3u1t chain A

Region: 14 - 292
Aligned: 270
Modelled: 278
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:dmma haloalkane dehalogenase;
PDBTitle: haloalkane dehalogenase, dmma, of marine microbial origin

Phyre2
13 |
| d1va4a_ |

### PDB 1va4 chain A

Region: 17 - 292
Aligned: 268
Modelled: 276
Confidence: 100.0%
Identity: 22%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloperoxidase

Phyre2
14 |
| d1zd3a2 |

### PDB 1zd3 chain A domain 2

Region: 6 - 292
Aligned: 280
Modelled: 286
Confidence: 100.0%
Identity: 18%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Epoxide hydrolase

Phyre2
15 |
| c2vavL_ |

### PDB 2vav chain L

Region: 27 - 292
Aligned: 266
Modelled: 265
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c
PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak)

Phyre2
16 |
| c2xt0A_ |

### PDB 2xt0 chain A

Region: 14 - 291
Aligned: 268
Modelled: 278
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:haloalkane dehalogenase;
PDBTitle: dehalogenase dppa from plesiocystis pacifica sir-i

Phyre2
17 |
| d1a8sa_ |

### PDB 1a8s chain A

Region: 17 - 291
Aligned: 267
Modelled: 275
Confidence: 100.0%
Identity: 20%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Haloperoxidase

Phyre2
18 |
| d1q0ra_ |

### PDB 1q0r chain A

Region: 16 - 292
Aligned: 271
Modelled: 277
Confidence: 100.0%
Identity: 18%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Aclacinomycin methylesterase RdmC

Phyre2
19 |
| d1ehya_ |

### PDB 1ehy chain A

Region: 11 - 291
Aligned: 272
Modelled: 280
Confidence: 100.0%
Identity: 18%
Fold: alpha/beta-Hydrolases
Superfamily: alpha/beta-Hydrolases
Family: Epoxide hydrolase

Phyre2
20 |
| c3kxpD_ |

### PDB 3kxp chain D

Region: 16 - 291
Aligned: 265
Modelled: 276
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-(n-acetylaminomethylene)succinic acid
PDBTitle: crystal structure of e-2-(acetamidomethylene)succinate2 hydrolase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1u2eA_ |
|  | 100.0 | 100 | PDB header:hydrolase Chain: A: PDB Molecule:2-hydroxy-6-ketonona-2,4-dienedioic acid PDBTitle: crystal structure of the c-c bond hydrolase mhpc
2 | d2rhwa1 |
|  | 100.0 | 51 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
3 | c1cr6A_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
4 | c2vf2A_ |
|  | 100.0 | 40 | PDB header:hydrolase Chain: A: PDB Molecule:2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate PDBTitle: x-ray crystal structure of hsad from mycobacterium2 tuberculosis
5 | c3kdaB_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:cftr inhibitory factor (cif); PDBTitle: crystal structure of the cftr inhibitory factor cif with the h269a2 mutation
6 | d1uk8a_ |
|  | 100.0 | 32 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
7 | d1hkha_ |
|  | 100.0 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
8 | d1brta_ |
|  | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
9 | d1b6ga_ |
|  | 100.0 | 20 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase
10 | c3oosA_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:alpha/beta hydrolase family protein; PDBTitle: the structure of an alpha/beta fold family hydrolase from bacillus2 anthracis str. sterne
11 | d1c4xa_ |
|  | 100.0 | 26 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
12 | c3u1tA_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:dmma haloalkane dehalogenase; PDBTitle: haloalkane dehalogenase, dmma, of marine microbial origin
13 | d1va4a_ |
|  | 100.0 | 22 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
14 | d1zd3a2 |
|  | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
15 | c2vavL_ |
|  | 100.0 | 18 | PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak)
16 | c2xt0A_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:haloalkane dehalogenase; PDBTitle: dehalogenase dppa from plesiocystis pacifica sir-i
17 | d1a8sa_ |
|  | 100.0 | 20 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
18 | d1q0ra_ |
|  | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Aclacinomycin methylesterase RdmC
19 | d1ehya_ |
|  | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
20 | c3kxpD_ |
|  | 100.0 | 15 | PDB header:hydrolase Chain: D: PDB Molecule:alpha-(n-acetylaminomethylene)succinic acid PDBTitle: crystal structure of e-2-(acetamidomethylene)succinate2 hydrolase
21 | d1cr6a2 |
| not modelled | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
22 | d1m33a_ |
| not modelled | 100.0 | 23 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Biotin biosynthesis protein BioH
23 | c2cjpA_ |
| not modelled | 100.0 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: structure of potato (solanum tuberosum) epoxide hydrolase i2 (steh1)
24 | d1a8qa_ |
| not modelled | 100.0 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
25 | d2vata1 |
| not modelled | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
26 | d1j1ia_ |
| not modelled | 100.0 | 24 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase
27 | c1j1iA_ |
| not modelled | 100.0 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:meta cleavage compound hydrolase; PDBTitle: crystal structure of a his-tagged serine hydrolase involved2 in the carbazole degradation (carc enzyme)
28 | c3p2mA_ |
| not modelled | 100.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:possible hydrolase; PDBTitle: crystal structure of a novel esterase rv0045c from mycobacterium2 tuberculosis
29 | c3e3aA_ |
| not modelled | 100.0 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:possible peroxidase bpoc; PDBTitle: the structure of rv0554 from mycobacterium tuberculosis
30 | d1azwa_ |
| not modelled | 100.0 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Proline iminopeptidase-like
31 | c2e3jA_ |
| not modelled | 100.0 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase ephb; PDBTitle: the crystal structure of epoxide hydrolase b (rv1938) from2 mycobacterium tuberculosis at 2.1 angstrom
32 | c3fobA_ |
| not modelled | 100.0 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:bromoperoxidase; PDBTitle: crystal structure of bromoperoxidase from bacillus anthracis
33 | c2r11D_ |
| not modelled | 100.0 | 19 | PDB header:hydrolase Chain: D: PDB Molecule:carboxylesterase np; PDBTitle: crystal structure of putative hydrolase (2632844) from2 bacillus subtilis at 1.96 a resolution
34 | d1bn7a_ |
| not modelled | 100.0 | 14 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase
35 | c3om8A_ |
| not modelled | 100.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:probable hydrolase; PDBTitle: the crystal structure of a hydrolase from pseudomonas aeruginosa pa01
36 | d2b61a1 |
| not modelled | 100.0 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
37 | c3qyjB_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:alr0039 protein; PDBTitle: crystal structure of alr0039, a putative alpha/beta hydrolase from2 nostoc sp pcc 7120.
38 | c3a2nF_ |
| not modelled | 100.0 | 17 | PDB header:hydrolase Chain: F: PDB Molecule:haloalkane dehalogenase; PDBTitle: crystal structure of dbja (wild type type ii p21)
39 | d1mtza_ |
| not modelled | 100.0 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Proline iminopeptidase-like
40 | c1zoiC_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: C: PDB Molecule:esterase; PDBTitle: crystal structure of a stereoselective esterase from2 pseudomonas putida ifo12996
41 | c3i1iA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis
42 | c2xuaH_ |
| not modelled | 100.0 | 21 | PDB header:hydrolase Chain: H: PDB Molecule:3-oxoadipate enol-lactonase; PDBTitle: crystal structure of the enol-lactonase from burkholderia2 xenovorans lb400
43 | c2qmqA_ |
| not modelled | 100.0 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution
44 | d1mj5a_ |
| not modelled | 100.0 | 15 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloalkane dehalogenase
45 | c3ibtA_ |
| not modelled | 100.0 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; PDBTitle: structure of 1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase (qdo)
46 | c1wprA_ |
| not modelled | 100.0 | 21 | PDB header:signaling protein Chain: A: PDB Molecule:sigma factor sigb regulation protein rsbq; PDBTitle: crystal structure of rsbq inhibited by pmsf
47 | c2wj4B_ |
| not modelled | 100.0 | 11 | PDB header:oxidoreductase Chain: B: PDB Molecule:1h-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; PDBTitle: crystal structure of the cofactor-devoid 1-h-3-hydroxy-4-2 oxoquinaldine 2,4-dioxygenase (hod) from arthrobacter3 nitroguajacolicus ru61a anaerobically complexed with its4 natural substrate 1-h-3-hydroxy-4-oxoquinaldine
48 | c2qvbA_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:haloalkane dehalogenase 3; PDBTitle: crystal structure of haloalkane dehalogenase rv2579 from mycobacterium2 tuberculosis
49 | d2pl5a1 |
| not modelled | 100.0 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase
50 | d1a88a_ |
| not modelled | 100.0 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Haloperoxidase
51 | c1y37A_ |
| not modelled | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:fluoroacetate dehalogenase; PDBTitle: structure of fluoroacetate dehalogenase from burkholderia sp. fa1
52 | c3v48B_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:putative aminoacrylate hydrolase rutd; PDBTitle: crystal structure of the putative alpha/beta hydrolase rutd from2 e.coli
53 | d1wm1a_ |
| not modelled | 100.0 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Proline iminopeptidase-like
54 | c2xmzA_ |
| not modelled | 100.0 | 19 | PDB header:lyase Chain: A: PDB Molecule:hydrolase, alpha/beta hydrolase fold family; PDBTitle: structure of menh from s. aureus
55 | c3qvmA_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:olei00960; PDBTitle: the structure of olei00960, a hydrolase from oleispira antarctica
56 | c2y6vB_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:peroxisomal membrane protein lpx1; PDBTitle: peroxisomal alpha-beta-hydrolase lpx1 (yor084w) from2 saccharomyces cerevisiae (crystal form i)
57 | c3r3xA_ |
| not modelled | 100.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:fluoroacetate dehalogenase; PDBTitle: crystal structure of the fluoroacetate dehalogenase rpa1163 -2 asp110asn/bromoacetate
58 | c3r0vA_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:alpha/beta hydrolase fold protein; PDBTitle: the crystal structure of an alpha/beta hydrolase from sphaerobacter2 thermophilus dsm 20745.
59 | c3bwxA_ |
| not modelled | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:alpha/beta hydrolase; PDBTitle: crystal structure of an alpha/beta hydrolase (yp_496220.1) from2 novosphingobium aromaticivorans dsm 12444 at 1.50 a resolution
60 | c3fsgC_ |
| not modelled | 100.0 | 16 | PDB header:hydrolase Chain: C: PDB Molecule:alpha/beta superfamily hydrolase; PDBTitle: crystal structure of alpha/beta superfamily hydrolase from oenococcus2 oeni psu-1
61 | c3nwoA_ |
| not modelled | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:proline iminopeptidase; PDBTitle: crystal structure of proline iminopeptidase mycobacterium smegmatis
62 | c3qitB_ |
| not modelled | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:polyketide synthase; PDBTitle: thioesterase domain from curacin biosynthetic pathway
63 | c2pseA_ |
| not modelled | 100.0 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:renilla-luciferin 2-monooxygenase; PDBTitle: crystal structures of the luciferase and green fluorescent2 protein from renilla reniformis
64 | c2ockA_ |
| not modelled | 100.0 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:valacyclovir hydrolase; PDBTitle: crystal structure of valacyclovir hydrolase d123n mutant
65 | c2yysA_ |
| not modelled | 100.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:proline iminopeptidase-related protein; PDBTitle: crystal structure of the proline iminopeptidase-related protein2 ttha1809 from thermus thermophilus hb8
66 | c3jw8A_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:mgll protein; PDBTitle: crystal structure of human mono-glyceride lipase
67 | d1xkla_ |
| not modelled | 100.0 | 12 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like
68 | d1r3da_ |
| not modelled | 100.0 | 15 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein VC1974
69 | d1e89a_ |
| not modelled | 100.0 | 12 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like
70 | c3e0xB_ |
| not modelled | 100.0 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lipase-esterase related protein; PDBTitle: the crystal structure of a lipase-esterase related protein2 from clostridium acetobutylicum atcc 824
71 | c3c5wP_ |
| not modelled | 100.0 | 13 | PDB header:hydrolase Chain: P: PDB Molecule:pp2a-specific methylesterase pme-1; PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme
72 | d1qo7a_ |
| not modelled | 100.0 | 12 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase
73 | c3bdiA_ |
| not modelled | 100.0 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ta0194; PDBTitle: crystal structure of predicted cib-like hydrolase (np_393672.1) from2 thermoplasma acidophilum at 1.45 a resolution
74 | c3gzjB_ |
| not modelled | 100.0 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:polyneuridine-aldehyde esterase; PDBTitle: crystal structure of polyneuridine aldehyde esterase2 complexed with 16-epi-vellosimine
75 | d3c70a1 |
| not modelled | 100.0 | 12 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hydroxynitrile lyase-like
76 | c3hjuB_ |
| not modelled | 100.0 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:monoglyceride lipase; PDBTitle: crystal structure of human monoglyceride lipase
77 | c3bf7B_ |
| not modelled | 100.0 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:esterase ybff; PDBTitle: 1.1 resolution structure of ybff, a new esterase from2 escherichia coli: a unique substrate-binding crevice3 generated by domain arrangement
78 | c3dqzB_ |
| not modelled | 100.0 | 11 | PDB header:lyase Chain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein; PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana
79 | c3l80A_ |
| not modelled | 100.0 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159
80 | d1imja_ |
| not modelled | 100.0 | 25 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Ccg1/TafII250-interacting factor B (Cib)
81 | d1k8qa_ |
| not modelled | 100.0 | 15 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase
82 | d1hlga_ |
| not modelled | 100.0 | 14 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase
83 | c3flaB_ |
| not modelled | 100.0 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:rifr; PDBTitle: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic2 pathway - form 1
84 | c3dyvA_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:esterase d; PDBTitle: snapshots of esterase d from lactobacillus rhamnosus:2 insights into a rotation driven catalytic mechanism
85 | d1tqha_ |
| not modelled | 99.9 | 16 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase/lipase
86 | c3llcA_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative hydrolase (yp_002548124.1) from2 agrobacterium vitis s4 at 1.80 a resolution
87 | c2q0xA_ |
| not modelled | 99.9 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: alpha/beta hydrolase fold protein of unknown function
88 | c3qm1A_ |
| not modelled | 99.9 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:cinnamoyl esterase; PDBTitle: crystal structure of the lactobacillus johnsonii cinnamoyl esterase2 lj0536 s106a mutant in complex with ethylferulate, form ii
89 | c2ronA_ |
| not modelled | 99.9 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:surfactin synthetase thioesterase subunit; PDBTitle: the external thioesterase of the surfactin-synthetase
90 | c2hdwB_ |
| not modelled | 99.9 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:hypothetical protein pa2218; PDBTitle: crystal structure of hypothetical protein pa2218 from pseudomonas2 aeruginosa
91 | c3h04A_ |
| not modelled | 99.9 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein with unknown function from2 staphylococcus aureus subsp. aureus mu50
92 | c2wtmC_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: C: PDB Molecule:est1e; PDBTitle: est1e from butyrivibrio proteoclasticus
93 | c3qmwD_ |
| not modelled | 99.9 | 14 | PDB header:hydrolase Chain: D: PDB Molecule:thioesterase; PDBTitle: redj with peg molecule bound in the active site
94 | c3fcyB_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:xylan esterase 1; PDBTitle: crystal structure of acetyl xylan esterase 1 from2 thermoanaerobacterium sp. jw/sl ys485
95 | d1l7aa_ |
| not modelled | 99.9 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetyl xylan esterase-like
96 | c1pjaA_ |
| not modelled | 99.9 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2)
97 | d1pjaa_ |
| not modelled | 99.9 | 13 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases
98 | d1xkta_ |
| not modelled | 99.9 | 13 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases
99 | d1qlwa_ |
| not modelled | 99.9 | 15 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:A novel bacterial esterase
100 | c2qs9A_ |
| not modelled | 99.9 | 19 | PDB header:structural protein Chain: A: PDB Molecule:retinoblastoma-binding protein 9; PDBTitle: crystal structure of the human retinoblastoma-binding2 protein 9 (rbbp-9). nesg target hr2978
101 | c2px6A_ |
| not modelled | 99.9 | 11 | PDB header:transferase Chain: A: PDB Molecule:thioesterase domain; PDBTitle: crystal structure of the thioesterase domain of human fatty2 acid synthase inhibited by orlistat
102 | c3mveB_ |
| not modelled | 99.9 | 14 | PDB header:lyase Chain: B: PDB Molecule:upf0255 protein vv1_0328; PDBTitle: crystal structure of a novel pyruvate decarboxylase
103 | c3ksrA_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:putative serine hydrolase; PDBTitle: crystal structure of a putative serine hydrolase (xcc3885) from2 xanthomonas campestris pv. campestris at 2.69 a resolution
104 | c3fnbB_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:acylaminoacyl peptidase smu_737; PDBTitle: crystal structure of acylaminoacyl peptidase smu_737 from2 streptococcus mutans ua159
105 | c2jbwB_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:2,6-dihydroxy-pseudo-oxynicotine hydrolase; PDBTitle: crystal structure of the 2,6-dihydroxy-pseudo-oxynicotine2 hydrolase.
106 | d1uxoa_ |
| not modelled | 99.9 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like
107 | c3fleB_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis.
108 | d1ufoa_ |
| not modelled | 99.8 | 20 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein TT1662
109 | d2jbwa1 |
| not modelled | 99.8 | 17 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:2,6-dihydropseudooxynicotine hydrolase-like
110 | c3lcrA_ |
| not modelled | 99.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:tautomycetin biosynthetic pks; PDBTitle: thioesterase from tautomycetin biosynthhetic pathway
111 | d1vlqa_ |
| not modelled | 99.8 | 18 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetyl xylan esterase-like
112 | c2qruA_ |
| not modelled | 99.8 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an alpha/beta hydrolase superfamily protein from2 enterococcus faecalis
113 | c2rauA_ |
| not modelled | 99.8 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:putative esterase; PDBTitle: crystal structure of a putative lipase (np_343859.1) from sulfolobus2 solfataricus at 1.85 a resolution
114 | c3ilsA_ |
| not modelled | 99.8 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:aflatoxin biosynthesis polyketide synthase; PDBTitle: the thioesterase domain from pksa
115 | c2qjwA_ |
| not modelled | 99.8 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein xcc1541; PDBTitle: crystal structure of a putative hydrolase of the alpha/beta2 superfamily (xcc1541) from xanthomonas campestris pv. campestris at3 1.35 a resolution
116 | c2hu7A_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:acylamino-acid-releasing enzyme; PDBTitle: binding of inhibitors by acylaminoacyl peptidase
117 | d1ex9a_ |
| not modelled | 99.8 | 14 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase
118 | c2h7xA_ |
| not modelled | 99.8 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:type i polyketide synthase pikaiv; PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label
119 | c3lp5A_ |
| not modelled | 99.8 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1
120 | d2fuka1 |
| not modelled | 99.8 | 19 | Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Atu1826-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0