153 c3cm6A_ Probab=33.84   E-value=22  Score=12.93  Aligned_columns=103  Identities=15%

Q ss_pred             HHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCC-----------EEEECCCCCCCCCCCCCCCHHHHC----
Q ss_conf             99999998187998-77407898899999999999998898-----------343045511465447134435623----
Q batch____        80 EHQTDFAGFNISYD-NYHSTHSEENRQLSELIYSRLKENGF-----------IKNRTISQLYDPEKGMFLPDRFVK----  143 (677)
Q Consensus        80 ~~~~~~~~lgi~~D-~~~~T~~~~~~~~v~~~f~~L~~~G~-----------iy~~~~~~~y~~~~~~~l~d~~v~----  143 (677)
                      ...+....+||+++ ...+..+..  ..+-+++.+|.+.|.           ...+..+..+.+.-.+-++++-..    
T Consensus       158 ~L~~l~~~~gI~~~g~~H~AL~DA--~~tA~I~~kmlk~~~~~~I~e~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  235 (294)
T c3cm6A_         158 NIGKMNEYYDLPTIGRAHDAMDDC--LNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRSSFMDAGKIFERV  235 (294)
T ss_dssp             HHHHHHHHTTCCCCSCTTCHHHHH--HHHHHHHHHHHHTTCCCSCCEEEESCCGGGSSCCCCCTTGGGCHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCCCCCCCHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             989999972899757534758999--999999999998498131888654433110146889877888645547688874


Q ss_pred             ------------------CCCCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCCEE
Q ss_conf             ------------------3344445542325610010200483443168101268824997536500
Q batch____       144 ------------------GTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFF  192 (677)
Q Consensus       144 ------------------g~~p~~~~~~~~gd~~e~~g~~~~~~el~~p~~~~~~~~~~~~~~~~~f  192 (677)
                                        |.||+|+..      -+.||..+  .+--..+...+..|.++.++.++|
T Consensus       236 ~p~~~~~~~~~~~~~~~y~~c~~c~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  294 (294)
T c3cm6A_         236 LPLVVTTIRAGDFRLEMYGVCRYCRKG------MDVCGTSH--QQTPHDLYKNEEDPIHFAKIAGYY  294 (294)
T ss_dssp             SSCEEEECCGGGCCGGGTTBCTTTCCB------TTTTTSSC--TTCCGGGSCCTTSCCHHHHHHTCC
T ss_pred             CCCCHHEEEHHHCCHHHHCCCCCCCCC------CHHHHHCC--CCCHHHHHHHHCCHHHHHHHCCCC
T ss_conf             574100000231352320127555860------00310001--125778987421522244401669