BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (813 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 1669 0.0 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 1055 0.0 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 1050 0.0 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 1040 0.0 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 826 0.0 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 802 0.0 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 784 0.0 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 748 0.0 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 736 0.0 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 717 0.0 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 709 0.0 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 708 0.0 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 690 0.0 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 688 0.0 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 684 0.0 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 673 0.0 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 668 0.0 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 663 0.0 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 629 e-178 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 601 e-170 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 600 e-170 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 586 e-165 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 568 e-160 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 551 e-155 UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 525 e-147 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 508 e-142 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 502 e-140 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 498 e-139 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 489 e-136 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 488 e-136 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 484 e-135 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 482 e-134 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 479 e-133 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 476 e-132 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 470 e-131 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 465 e-129 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 462 e-128 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 462 e-128 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 460 e-127 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 454 e-126 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 451 e-125 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 451 e-125 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 447 e-124 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 442 e-122 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 440 e-121 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 437 e-121 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 437 e-120 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 435 e-120 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 435 e-120 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 430 e-119 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 425 e-117 UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteoba... 424 e-117 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 422 e-116 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 420 e-115 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 419 e-115 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 417 e-115 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 415 e-114 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 414 e-114 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 414 e-114 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 410 e-113 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 410 e-112 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 409 e-112 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 408 e-112 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 407 e-112 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 405 e-111 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 405 e-111 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 404 e-111 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 402 e-110 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 402 e-110 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 402 e-110 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 401 e-110 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 399 e-109 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 399 e-109 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 394 e-108 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 394 e-108 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 392 e-107 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 392 e-107 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 391 e-107 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 385 e-105 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 385 e-105 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 383 e-104 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 382 e-104 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 382 e-104 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 382 e-104 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 381 e-104 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 381 e-104 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 379 e-103 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 377 e-103 UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfurica... 377 e-103 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 377 e-103 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 376 e-102 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 374 e-102 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 373 e-101 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 371 e-101 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 370 e-100 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 369 e-100 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 367 e-100 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 367 e-100 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 367 e-99 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 366 2e-99 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 366 2e-99 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 365 3e-99 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 365 3e-99 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 364 6e-99 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 360 2e-97 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 359 3e-97 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 359 3e-97 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 358 6e-97 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 357 1e-96 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 356 2e-96 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 355 3e-96 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 355 6e-96 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 353 1e-95 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 352 4e-95 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 351 6e-95 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 351 7e-95 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 350 1e-94 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 349 2e-94 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 349 3e-94 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 348 6e-94 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 348 7e-94 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 345 3e-93 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 345 5e-93 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 345 6e-93 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 343 1e-92 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 343 2e-92 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 342 5e-92 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 341 6e-92 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 340 1e-91 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 338 6e-91 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 336 2e-90 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 335 3e-90 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 335 3e-90 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 334 7e-90 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 332 2e-89 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 332 3e-89 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 332 5e-89 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 331 8e-89 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 331 8e-89 UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q... 330 1e-88 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 329 3e-88 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 328 5e-88 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 325 6e-87 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 322 3e-86 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 321 7e-86 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 320 1e-85 UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organ... 316 3e-84 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 315 4e-84 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 314 7e-84 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 311 7e-83 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 310 1e-82 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 310 2e-82 UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collins... 309 2e-82 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 308 6e-82 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 306 2e-81 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 305 4e-81 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 305 4e-81 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 304 9e-81 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 304 1e-80 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 303 1e-80 UniRef50_D2G831 Ribonuclease R n=2 Tax=Firmicutes RepID=D2G831_S... 303 1e-80 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 303 2e-80 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 301 6e-80 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 300 1e-79 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 299 4e-79 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 298 5e-79 UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica Re... 291 6e-77 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 291 8e-77 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 288 5e-76 UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases ... 288 7e-76 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 285 4e-75 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 282 3e-74 UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 994... 279 3e-73 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 278 6e-73 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 277 9e-73 UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n... 276 2e-72 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 275 7e-72 UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter w... 273 2e-71 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 273 2e-71 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 272 3e-71 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 272 4e-71 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 272 5e-71 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 271 1e-70 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 270 1e-70 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 270 2e-70 UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage ... 268 5e-70 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 265 4e-69 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 256 3e-66 UniRef50_D1NGV9 Ribonuclease R (Fragment) n=1 Tax=Haemophilus in... 251 1e-64 UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria Rep... 249 3e-64 UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepI... 248 6e-64 UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam ... 248 7e-64 UniRef50_Q7VIS0 Putative uncharacterized protein n=1 Tax=Helicob... 238 9e-61 UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n... 237 1e-60 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 237 1e-60 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 237 1e-60 UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35... 236 3e-60 UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepI... 234 1e-59 UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_... 232 4e-59 UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_S... 231 1e-58 UniRef50_UPI00019779BC hypothetical protein HcinC1_09125 n=1 Tax... 229 3e-58 UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria Rep... 229 4e-58 UniRef50_B6FY97 Putative uncharacterized protein n=1 Tax=Clostri... 227 2e-57 UniRef50_A8ERD9 Ribonuclease R n=1 Tax=Arcobacter butzleri RM401... 226 3e-57 UniRef50_Q46363 Acetazolamide conferring resistance protein zam ... 226 3e-57 UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysente... 225 5e-57 UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1... 222 5e-56 UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii ... 221 8e-56 UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9... 221 9e-56 UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turner... 217 2e-54 UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria R... 217 2e-54 UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Z... 212 5e-53 UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis ME... 212 5e-53 UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis A... 208 8e-52 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 206 2e-51 UniRef50_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus ... 204 8e-51 UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosacch... 201 8e-50 UniRef50_Q9ZJX9 Ribonuclease R n=18 Tax=Helicobacter RepID=RNR_H... 197 2e-48 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 196 4e-48 UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1... 193 2e-47 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 191 9e-47 UniRef50_UPI0000D53949 ribonuclease R n=1 Tax=Psychroflexus torq... 189 3e-46 UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria R... 189 5e-46 UniRef50_D1R8V1 Putative uncharacterized protein n=1 Tax=Parachl... 188 6e-46 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 187 2e-45 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 187 2e-45 UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 ... 185 6e-45 UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agarica... 185 8e-45 UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina R... 184 2e-44 UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosac... 182 4e-44 UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria R... 182 4e-44 UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilag... 181 7e-44 UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria R... 181 9e-44 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 181 1e-43 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 181 1e-43 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 180 2e-43 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 180 2e-43 UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n... 179 3e-43 UniRef50_D1YYD5 Exoribonuclease II n=10 Tax=cellular organisms R... 179 4e-43 UniRef50_C4PZR2 Ribonuclease II-related n=3 Tax=Schistosoma mans... 179 5e-43 UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria R... 178 7e-43 UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_V... 177 1e-42 UniRef50_C1MNB1 Predicted protein (Fragment) n=1 Tax=Micromonas ... 177 1e-42 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 177 1e-42 UniRef50_Q0WPN0 Putative 3'-5' exoribonuclease n=2 Tax=Arabidops... 176 3e-42 UniRef50_D0A826 Exosome complex exonuclease RRP44, putative n=4 ... 176 4e-42 UniRef50_A8PEK1 RNB-like protein n=5 Tax=Brugia malayi RepID=A8P... 176 5e-42 UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clu... 175 8e-42 UniRef50_UPI00016C3D4C ribonuclease R n=1 Tax=Gemmata obscuriglo... 174 1e-41 UniRef50_A9UUB7 Predicted protein n=1 Tax=Monosiga brevicollis R... 174 2e-41 >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 1669 bits (4322), Expect = 0.0, Method: Compositional matrix adjust. Identities = 811/813 (99%), Positives = 811/813 (99%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR Sbjct: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH Sbjct: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVRP TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA Sbjct: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR QVGKKVNFEPDSAFRGEKKTKPKAA Sbjct: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPDSAFRGEKKTKPKAA 780 Query: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE Sbjct: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/754 (66%), Positives = 606/754 (80%), Gaps = 4/754 (0%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DPF +REA+ Y NPIPSRE+ILE LT+ P +R++L L +EGEEQ EGLRRRLRAME Sbjct: 8 DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTCIH 120 RDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG ++ D+ L QM+T IH Sbjct: 68 RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIH 127 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD VL QP G D++GR+E R+VR+L + QIVGR+F E G +VVPDDSR+ DILIP Sbjct: 128 GDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPN 187 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D GARMG VVV+E+T R TR +GK+VEVLG+NM GM IA+RTH+IP+ WP Sbjct: 188 DLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAE 247 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VEQQVAGL EEVPEEAK GRVDLR LPLVTIDGEDARDFDDAVYCE K+GGGWRLWVAIA Sbjct: 248 VEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 307 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVRP T LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEMTVS Sbjct: 308 DVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 367 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 G+L+GYK YEAVM+SHARLTYTKV IL+GD++LRE+Y LV HLEELH +Y+VL A Sbjct: 368 ETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSA 427 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ERG I FE+ E KFIFNA+R+IE IE RNDAHKLIEECMILANI++A VEKAKE Sbjct: 428 RDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+R+H+ P E +T FR L ELGL+L GG +P P DYA L++ + +RPD E++QTMLL Sbjct: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-HQGNTTET 599 RSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AK++G +Q T T Sbjct: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 GGYHYS ++M G+ CSM ERRAD+ATR+V+DWLKC++M D VG +GV+++VT FGF Sbjct: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FVRL +L IDGLVH+S+L NDYY +D +GQRL+GES G YRLGD V+V+V AVN+D+R+ Sbjct: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQ 727 Query: 720 IDFSLISSERAPRNVGKTAREKAKKGDAGKKGGK 753 IDF L+ + R R GKTA+++A + A +G K Sbjct: 728 IDFELVETSRKLRGQGKTAKKRADEARAKAQGKK 761 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/744 (67%), Positives = 596/744 (80%), Gaps = 1/744 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 ++QDP +RE EKY NPIPSREFIL + P +RDE+ L I E+Q+E +RRRLR Sbjct: 9 INQDPHYKRELEKYGNPIPSREFILTVIRDNNAPMNRDEILTALSIRNEDQIEAMRRRLR 68 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AME DGQLVFT+R+ YALPE+LDL KGTVIGHR+G+GFL+V+G+KDDL++ + QM+ +H Sbjct: 69 AMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMH 128 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD VLAQP G DR+GRRE RIVRVL + QIVGR+F E G G+VVPDDSR+ DIL+P Sbjct: 129 GDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + GARMG VVVVEL +R + +G I E+LGDNM GM V+IALR H+I + +P A Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSA 248 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VE+ V EEV EEAK GRVDLR+LPLVTIDGEDARDFDDAVYCEK G GW+LWVAIA Sbjct: 249 VEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEK-HGKGWKLWVAIA 307 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVR + LD EA NRG SVYFP++V+PMLPE+LSNGLCSLNPQVDRLCMVCEM +S Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +KG+LT Y+FYEAVM+SHARLTYTKV +L+GD++LR +Y+ LV HLEEL+ LY+ L A Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +RG I FE+ E KFIFNA RIERIE RNDA K+IEECM LANI+AA F+EK KEP Sbjct: 428 RHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKEP 487 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+RIH PS E +TSFR+ L+E GL L GG KP +DYA LLE V +RPD E++QTMLL Sbjct: 488 ALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTMLL 547 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y +N GHFGLAL+ YAHFTSPIRRYPDLTLHR IKYLLAKEQG + TT+TG Sbjct: 548 RSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTG 607 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYS +EM LG HCSM ERRAD+ATR+VADWLKC++M D VG F GVISSVTGFG F Sbjct: 608 GYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGLF 667 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVH+S+L+NDYY+FD QRL+GE+SG YRLGD+V ++VEAV+++ + + Sbjct: 668 VRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKMV 727 Query: 721 DFSLISSERAPRNVGKTAREKAKK 744 DFSLI SER PR GKTA+EKAKK Sbjct: 728 DFSLIGSERKPRRAGKTAKEKAKK 751 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/741 (66%), Positives = 596/741 (80%), Gaps = 4/741 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DPF +RE++ Y NPIPSREFILE L + P +R++L L + GEEQ EGLRRRLR Sbjct: 5 IPNDPFADRESQNYENPIPSREFILEFLEQAGVPMNRNDLFEALKLAGEEQYEGLRRRLR 64 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKT 117 AMERDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG + DD+ L QMK Sbjct: 65 AMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKN 124 Query: 118 CIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDIL 177 IHGD VL QP ++GRRE R+VRVL + SQIVGR+F E G +VVPDDSR+S DIL Sbjct: 125 IIHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDIL 184 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 IP + GARMG VVV+E+T R +R +GK+VEVLG+NM GM IA+RTH+IPY W Sbjct: 185 IPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEW 244 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 P+AVE+Q+ L EEVPEEAK GRVDLR+LPLVTIDGEDARDFDDAV+CEKK+ GGWRLWV Sbjct: 245 PEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWV 304 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVSYYVRP + LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEM Sbjct: 305 AIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEM 364 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 T+S G+L+ YK YEAVM+SHARLTY+KV IL+GD++LRE+Y PLV HLEELH +YKVL Sbjct: 365 TISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 +AR++RG I FE+ E KFIFNAER+IE IE RNDAHK+IEECMILANI++A VEKA Sbjct: 425 KEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVEKA 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 KEPAL+RIH+ P + FR L+ELGLEL GG +P P DYA+L +A R D E++QT Sbjct: 485 KEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQT 544 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-HQGNT 596 MLLRSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AKE+G +Q Sbjct: 545 MLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRW 604 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 T TGGYHYS ++M G+ CSM ERRAD+ATR+VADWLKC++M D VG+ +GVI++VT Sbjct: 605 TPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTS 664 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 FGFFVRL DL IDGLVH+S+L NDYY+FD +GQRL+GES G YRLGD V+V+V AVN+D Sbjct: 665 FGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNLD 724 Query: 717 ERKIDFSLISSERAPRNVGKT 737 +++IDF L+ + R R GKT Sbjct: 725 DKQIDFELVETSRKLRGEGKT 745 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/830 (51%), Positives = 559/830 (67%), Gaps = 46/830 (5%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DP REAEKY NPIPSRE IL+HL +R PA+R+EL E +E +E +E LRRRLRA Sbjct: 6 SLDPEAAREAEKYENPIPSRELILQHLGERGSPAAREELVEEFGLESDEDIEALRRRLRA 65 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 MERDGQL++TRR YA ++LDLV G V GHRDG+GFL + DDL+LS QM+ G Sbjct: 66 MERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDG 125 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+ LA+ G DR+GRRE IV V+ IVGRY E+ VGFVVPD+ ++ ++L+ P Sbjct: 126 DRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPG 185 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + + A+ G V V++T PT+R + G IVEV+G+ M GM +D+ALR+ +IP++WP+AV Sbjct: 186 RALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHVWPEAV 245 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG-----GGWRLW 296 ++ A LK EV E+ K RVDLR LP VTIDGEDARDFDDAVYCEK G GG+RL+ Sbjct: 246 LKEAARLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLY 305 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADVS+YV+ + LD+EA RG SVYFP +V+PMLPE LSNGLCSLNP VDRL MVCE Sbjct: 306 VAIADVSHYVKVDSALDKEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCE 365 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-----LREQYAPLVKHLEELH 411 +T+S G++T Y+FYEAV+ SHARLTY KV +L+ + L +YA ++ HL++L+ Sbjct: 366 ITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHLKQLY 425 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 +LYKVL KAR RG I FE++E + +F A+R+I I+ T+RNDAHKLIEECM+ AN++ A Sbjct: 426 SLYKVLLKARHTRGAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCANVATA 485 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK-PEPRDYAELLESVADRP 530 F++K + PAL+R+HD P E R+ L ELGL L G + P P+DY LLE + RP Sbjct: 486 AFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKIQGRP 545 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 D ++QT++LRS+ QA+Y EN GHFGL ++YAHFTSPIRRYPDL +HRAI+ ++ + Sbjct: 546 DFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRR 605 Query: 591 GHQGNTTETGG-------YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 E Y Y + QLG+ CSM ERRADEATRDV +WLKC+FM D+V Sbjct: 606 DTPHVRREGAPSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRV 665 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F GVI++VTGFG FV L D++++GLVHV+++ DYY FD + RL GE SG+++RLG Sbjct: 666 GETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGRSFRLG 725 Query: 704 DRVEVRVEAVNMDERKIDFSLI---SSERAPRNVGKTAREK------------------- 741 D VEVRV V++DERKIDF LI S R+ G+ RE Sbjct: 726 DSVEVRVMRVDLDERKIDFELIAGGSKTAGQRDSGERGREPGNADIRKSRELKQALMAEA 785 Query: 742 ---AKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAK 788 +KG A K GG + + G +P SA + +K+ + RKAK Sbjct: 786 KSGGRKGKADKAGGSKSRSGAS---KPKSAGKPAEKSPASSGGPRKRKAK 832 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/730 (53%), Positives = 509/730 (69%), Gaps = 3/730 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP+Q+REA++Y NPIPSRE+I L + S+ L + I +E + LRRRLR Sbjct: 1 MVVDPYQKREAKRYKNPIPSREYISSCLRTSQDLISQKNLEKKFGINNQESKKALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQ+++T +CY PE L +VKG VIGHRDGYGFLR E K+DL+LSSEQMK+CIH Sbjct: 61 AMERDGQVIYTSNRCYVAPESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD +LA + K R AR +++L P IVGRY+ + + FV+PDD+R +F I I Sbjct: 121 GDIILAHIVETHGKRRSSARFLKLLQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFS 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 +G +V V+L Q P R ++ G IVE+LG MGT +A++IALRTH IP +W + Sbjct: 181 AIKDDISIGSIVSVKLKQHPIRNSRVQGFIVEILGKEMGTNLAIEIALRTHLIPSLWSKE 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG--GWRLWVA 298 V++QV + ++ + R DLR P TID EDARDFDDAV+C++K GW LWVA Sbjct: 241 VKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVA 300 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV+P+TPLD+ A RGTSVYFPS VIPMLPE +S LCSL P V+RLC++CEM+ Sbjct: 301 IADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMS 360 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 +S +G L YK YE ++ SH R TY +++ I GD LR +Y +K +E L L + + Sbjct: 361 LSKQGELISYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFN 420 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K + GI FE+ E KF+ ++ RI+ I Q RNDAHK IE CMILAN+++ARFVEK K Sbjct: 421 KDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVEKYK 480 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 P LFR HD+P + + S R L ELG L GG+ PE Y+ LL++V+DRP+ EM+QT+ Sbjct: 481 YPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMIQTV 540 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-HQGNTT 597 LLRSM QA+Y P+NRGHFGL+L SY HFTSPIRRYPDL LHR IKYLL K++ + N Sbjct: 541 LLRSMTQAVYSPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKSNYN 600 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + YS E+ ++G HCS+ ERRADEA RDV DWLKCDFM ++G + GVIS+VT F Sbjct: 601 FYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIGCILNGVISNVTTF 660 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 GFFVRL+ FIDGLVH++SL++DYY FD +G +L+G+S+ TY LGD ++V+V +VN++E Sbjct: 661 GFFVRLNQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNE 720 Query: 718 RKIDFSLISS 727 +KI+ SL S Sbjct: 721 KKIELSLYKS 730 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/749 (52%), Positives = 519/749 (69%), Gaps = 15/749 (2%) Query: 1 MSQ----DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGE-EQLEGL 55 MSQ DP +EAEKY NP+ SREFIL+ L++++ P + + L L +G+ E++EGL Sbjct: 1 MSQETVSDPQAAQEAEKYDNPVASREFILQLLSEQDGPLTLNRLISHLEYDGDDERIEGL 60 Query: 56 RRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQM 115 RR+RAMERDGQ++ RR Y +LV+G V+GHRDG+GFL + DD++LS M Sbjct: 61 SRRMRAMERDGQVIRNRRGGYVPVTHAELVRGRVLGHRDGFGFLVPDDGGDDVFLSPRVM 120 Query: 116 KTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFD 175 + ++GD+ + Q G DR+GRRE +V V+ ++IVGR EAG+ FVVPD +R++ D Sbjct: 121 RALLNGDRAVVQVTGLDRRGRREGNLVEVIERANAEIVGRLVLEAGIAFVVPDHARITQD 180 Query: 176 ILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 IL+P +MGAR G +V V L ++PT R K VGK+VEVLGD+M GM +D+A+ +H IP+ Sbjct: 181 ILVPMTDLMGARDGQIVRVALVEQPTLRHKPVGKVVEVLGDHMSPGMEIDVAINSHGIPH 240 Query: 236 IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295 WP+ V + GL EV E K+GRVDLR +PLVTIDG D++DFDDAV+C+ G+RL Sbjct: 241 EWPEEVLAAIDGLNPEVEESHKSGRVDLRSMPLVTIDGADSKDFDDAVFCQAA-PEGFRL 299 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 VAIADVS+YV + LDRE NR TSVYFP +V+PMLPEVLSNGLCSLNP VDRLC+ Sbjct: 300 LVAIADVSHYVNVGSALDREGFNRATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCA 359 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLY 414 +M ++++G + ++F+E VM S ARLTY V +L D + R +A L++ LE LH +Y Sbjct: 360 DMLINNEGHIAKFRFFEGVMKSAARLTYDTVAKVLVDQDAEARAAHAHLLEPLETLHGVY 419 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 KVL ARE RG I F++ E K +F R+IE I +RNDAHK+IEECMI AN++A RFV Sbjct: 420 KVLRSARERRGAIDFDTVETKIVFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFV 479 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 K PAL+R+HD+P+ E IT R++LAE GL L GG++P P+D+ LL V R D Sbjct: 480 ADHKIPALYRVHDRPTAEKITDLRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGRADFLT 539 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 +QTM+LRS+KQA+Y P+N GHFGLA + YAHFTSPIRRYPDL +HRAI++LL Sbjct: 540 IQTMILRSLKQAVYSPDNLGHFGLAHEFYAHFTSPIRRYPDLMVHRAIRHLL-------- 591 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 T + Y+ +EM+ +G+HCS ERRADEATRD DWLKC+FMLD+VG VF+G ++SV Sbjct: 592 RTGAPDRFPYNHDEMVIIGEHCSNNERRADEATRDATDWLKCEFMLDKVGEVFEGRVASV 651 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 GFG FV L D F++GL+H+++L DYY FD V L GE SG+ Y L D + VRV V+ Sbjct: 652 LGFGLFVELKDFFVEGLLHITALTKDYYHFDPVTLSLRGERSGRVYALNDAITVRVARVD 711 Query: 715 MDERKIDFSLISSERAPRNVGKTAREKAK 743 +DERKIDF L + A AR + + Sbjct: 712 LDERKIDFVLPDDDEALSESSGDARSEPR 740 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/727 (48%), Positives = 507/727 (69%), Gaps = 10/727 (1%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP +REA+KY NPIPSREFI+E L K +KP ++A L I+ +E+ E L RRL+ Sbjct: 39 MIADPHADREADKYENPIPSREFIIELLEKEQKPLRIKQIATILDIDDDERFEALSRRLK 98 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AM RDGQ++ RR + L +++DL+KG VIGH G+GF++ E DL+L +M H Sbjct: 99 AMVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFH 158 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD+V+A +G DRKGRRE IV ++ I+GR E G+G+V P+++R++ DI IP Sbjct: 159 GDKVIASVIGVDRKGRREGMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQ 218 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D ++ A G +V+VE+ +PT+R+ A+GKI+EV+GD + GM +D A+ ++IP WPQ Sbjct: 219 DGLLDAEEGQIVMVEVIHQPTKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQE 278 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q+ + +EV +E K GR DLR LPLVTIDG D++DFDDAV+ K+R GWRL VAIA Sbjct: 279 LLDQLEAIPDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFA-KRRKNGWRLVVAIA 337 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ TPLD+EA RG SVYFP +V+PMLPE LSN LCSLNP VDRLCMVC+M++ Sbjct: 338 DVSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSID 397 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDK 419 + G+L +FY+AVM+S ARLTY +V +L + R+ + +V ++E+L++LY++L Sbjct: 398 NDGKLERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKG 457 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 AR ERG + F++ E + +F+ R+IE+I RN+AHKLIEECM++AN++ AR+++ K Sbjct: 458 ARSERGALEFDTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKWHKI 517 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 P L+R+H+KPS E + + R+ L + GL L GG++P+ DYA + E+V +P ++ T+L Sbjct: 518 PMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVL 577 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRSM QA+Y P+N GHFGL + YAHFTSPIRRYPDL +HRAI++ K+ + Sbjct: 578 LRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQ--------DV 629 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + YS ++M LG+HCS ERRADEATRD +LKC+F+ ++G + V+++ T FG Sbjct: 630 SKFKYSEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEEYDAVVTAATNFGL 689 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV L+ L+++GLVH++ L DY+ +D L GE +G+ YRLGD++ V+V VN+D+RK Sbjct: 690 FVELEPLYVEGLVHITELGEDYFHYDASRHCLKGERTGKVYRLGDKLRVQVAQVNLDDRK 749 Query: 720 IDFSLIS 726 ID +S Sbjct: 750 IDLRFLS 756 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/726 (50%), Positives = 500/726 (68%), Gaps = 11/726 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP+QERE KY NPIPSRE++LE L +P R E+A L +E E E LRRRLRAM Sbjct: 12 RDPYQEREQAKYDNPIPSREYLLELLAAHRRPLGRREIADALGLESPEHHEALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR+ Y + + +LV+G V+G DG GFL +G D L LS QM+ +HGD Sbjct: 72 ERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + +A+ G D G + +V +L QI GR+F E GVGF+VP++ RL D+L+ PD Sbjct: 132 RAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLLAPDG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 GA G + V E+ +P R + +G+I++VLG + G +A R H IP WP VE Sbjct: 192 RGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWPAEVE 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VA EEVPE K GR DLR LPLVTIDG DA+DFDDA+YCE GWRL VAIADV Sbjct: 252 KEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPT-AKGWRLVVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YVRP T LD+EAR RG SVYFP V+PMLPE LSNGLCSLNP+VDRL MVC+M + Sbjct: 311 SHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDMLLQGN 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTK-VWHILQGDQDLREQYA-PLVKHLEELHNLYKVLDKA 420 G++ +FY AV+ S ARLTY + ++ GD+ +R +V+HLE LH LYK L KA Sbjct: 371 GKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENLHGLYKTLRKA 430 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ERG I F++ E + F+ E R+ +E T+RND HK++EECMI AN+ A+F+ K K P Sbjct: 431 RDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFLLKNKVP 490 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 +L+R+H++P + + + LA+ GLEL GG++P +DY ++E +RPD +++T+LL Sbjct: 491 SLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHLIETVLL 550 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+ A Y P+N GHFGLAL++Y HFTSPIRRYPDL +HR I +++ GH+G + Sbjct: 551 RSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVI---DGHRGRS---- 603 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + +++ LG+HCSMAERRADEATRD LKC+++ D +G+ F GVI++VT FG F Sbjct: 604 -FPMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDEFTGVIAAVTSFGLF 662 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L+ +++DGLVH+++L++D++ FD VG RL+G+ +G+ YRL DRV VRV V+ D+RKI Sbjct: 663 VSLEGVYVDGLVHITNLESDFFHFDSVGHRLVGDRTGKEYRLSDRVRVRVGRVDKDDRKI 722 Query: 721 DFSLIS 726 D +++ Sbjct: 723 DLEVVA 728 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/756 (49%), Positives = 493/756 (65%), Gaps = 36/756 (4%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 PIPSRE IL L P S ++A L + +E +G ++RL AMERDGQ+ R+ Y Sbjct: 49 PIPSREEILGVLRTSGSPQSAGDIAKALSVTRKEH-DGFQKRLAAMERDGQIELNRKGRY 107 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 L + + V G V GHRDG+GFL + +DD++L +++ +H D+ + +G DR+GR Sbjct: 108 ELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGYDRRGR 167 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E +IV ++ ++GR +E GV V P+D R+S DILIPP AR+G VV VEL Sbjct: 168 PEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQGKARVGQVVSVEL 227 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + P R + VG++VEVLG+ GM ++IA+R + +P+ + A Q+ + L +EV + Sbjct: 228 IEFPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSPAAAQEASALPDEVRQAD 287 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEK---KRGGGWRLWVAIADVSYYVRPSTPLD 313 R+DLRD+PLVTIDGEDARDFDDAVYCE R GWRL VAIADVS+YVRP TPLD Sbjct: 288 LDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVSHYVRPGTPLD 347 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +A +R TSVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+ +++KG L GY+FY A Sbjct: 348 ADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAKGELKGYQFYPA 407 Query: 374 VMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 VM S ARLTY +VW +L + + LV HL+ L+ L++VL KAR RG I F++ Sbjct: 408 VMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYELFQVLLKARRARGAIDFDTT 467 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E + NA+ +IE+I RNDAH+LIEECM+ AN+ AA F+E+ K PAL+RIH PS E Sbjct: 468 ETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALYRIHAGPSEE 527 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + R L GL L GG+KP+ DYAE+++ + RPDA MLQTMLLRSM+QA+Y P+N Sbjct: 528 KLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAVYSPDN 587 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA--KEQGHQGNTTETGGYHYSMEEML 610 GHFGL+ ++YAHFTSPIRRYPDL +HRAIK +LA K Q + TE L Sbjct: 588 IGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELNTAISPKARRL 647 Query: 611 Q------------------------LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 Q LG HCS ERRADEA+RDV WLKC FM D++G+ Sbjct: 648 QAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKCYFMRDKLGSD 707 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 + G +S+VT FG FV+LD+L+++GLVHV+ L +DY+++D+ L GE +G YRL DRV Sbjct: 708 YAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYRLTDRV 767 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 V+V V++D RKIDF L+ A KT R +A Sbjct: 768 RVQVSRVDLDARKIDFRLVQEPSA-----KTLRARA 798 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/714 (49%), Positives = 484/714 (67%), Gaps = 17/714 (2%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 +Y P+PSRE+I + L ++ P S LA L I+ E LE RRLRAMERDGQL+ R Sbjct: 2 QYDYPLPSREYIEQTLAEQGVPMSFAALAGALDIQPHE-LEHFERRLRAMERDGQLMRNR 60 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 R + LP++ DL++G V GH DG+GFL + + D++L ++M+ +HGD+ + + G D Sbjct: 61 RDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHGDRAIVRIAGQD 120 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 R+GR E ++V +L S++VGR E GV VVP++ RL+ DIL+ P + G VV Sbjct: 121 RRGRPEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPGG-KKVQPGQVV 179 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 VEL ++PT+ + +G++ EVLG+ GM ++IALR H++P+ + + L V Sbjct: 180 TVELIEQPTKYAQPIGRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEAKADTRKLPTAV 239 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 ++ AGR D+ LPLVTIDGE A+DFDDAVYCE++ G G+RL VAIADVS+YV + L Sbjct: 240 RKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQ-GRGFRLVVAIADVSHYVEAGSAL 298 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 DR+A RG SVYFP +VIPMLPE LSNGLCSLNPQV+RLCMV +M +S G + Y+FY Sbjct: 299 DRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMGISMTGEIKAYRFYP 358 Query: 373 AVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 AVM SHARLTYTKV L D ++ L+ HLE L L++VL KAR +RG I FE+ Sbjct: 359 AVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRVLLKARAKRGAIDFET 418 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E + IF+ +IERI RNDAH+LIEECM+ AN+ A+ F+ K PAL+R+H+ P+ Sbjct: 419 TETRMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHKNDHPALYRVHEGPTP 478 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 E + R+ L+E GL L GG++P +DYA LL+ V DRPDA++LQT++LRS++QA+Y P+ Sbjct: 479 EKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQTVMLRSLRQAVYSPD 538 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +LA G HY+ + Sbjct: 539 NVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA-------------GEHYAAGDWDD 585 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +G HCS ERRADEATRDV WLKC +M D+VG F+G +S+V FG FV LD +FI+GL Sbjct: 586 IGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEEFEGSVSAVVPFGLFVALDGIFIEGL 645 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +HVS L DY+ +D+ ++GE +G+ +RL DRV V++ V+M+ KIDF L+ Sbjct: 646 LHVSELGADYFHYDEARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKIDFRLV 699 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/726 (47%), Positives = 482/726 (66%), Gaps = 10/726 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +RE EKY PI SRE+IL +L +P++ +++ +L + E+Q E LRRRLRAM Sbjct: 13 RDPMFDREKEKYERPIVSREYILSYLESAGQPSTLEDIIADLEVSEEDQ-EALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + E ++LV+GTV H DG+GFL EG DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVEAMELVRGTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +L + +G DR+GR E IVR+L Q+VGRY+ E GV +VVP+D R+ + + Sbjct: 132 TILGRAVGEDRRGRIEGAIVRILERALKQVVGRYYAEGGVRYVVPEDRRIPQEFAVVEGG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G +V +E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP V Sbjct: 192 ELAPVHGQIVTLEITQYPDGRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWPDEVL 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ E VPE K GR DLR LPLVTIDG DA+DFDDAVY E+ G +RL VAIADV Sbjct: 252 AEITHFSETVPEAIKEGRRDLRALPLVTIDGADAKDFDDAVYAEEIENG-FRLIVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 + YVRP + LD+EA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM+CEM Sbjct: 311 ATYVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEMETDLT 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + ++F VM S R TY +V IL GD+DLR + A +V HLE LH LY+ KARE Sbjct: 371 GEVQRFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESFAKARE 430 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F+S+E++ I+N + RIE+I RN AH++IEECM+ AN+ AA++ + P L Sbjct: 431 RRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIHELPML 490 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R+H +PS + + R L ELG+ + P D A ++E +R D+ ++QT++LRS Sbjct: 491 YRVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQTVILRS 550 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 + QA Y + HFGLA +Y HFTSPIRRYPDL +HR I+ LL + Sbjct: 551 LSQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALL--------DAAGAEPR 602 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + + + +LGQHCSM ERRADEA+R+ +WLKC+FM+D+VG + G+I+ VTGFG FV Sbjct: 603 WFPQKVLQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGETYTGIITGVTGFGLFVA 662 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L +++++GL+H+S+L DY+ FD R++G+ + +T++LGD +++RV VN+D+RKIDF Sbjct: 663 LREIYVEGLIHISTLGEDYFHFDAQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKIDF 722 Query: 723 SLISSE 728 + E Sbjct: 723 ERVMPE 728 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/746 (48%), Positives = 483/746 (64%), Gaps = 15/746 (2%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +REA +YA PI SRE IL+ L + P + +E+A +L++ ++++ L +RL AM Sbjct: 106 KDPHADREALRYAEPIASREAILQLLEACDGPQTAEEIAEQLNLS--DRIDALGKRLAAM 163 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 R+ QLV RR YA ++ L+ G VI + +G+GFL+ +G DDL+L +M+ +HGD Sbjct: 164 VREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHGD 223 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + LA G DR+GRRE I RVL S+++GR+F E GV +V PDD R+ ++ I PD Sbjct: 224 RALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDG 283 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 I AR G +VV EL P R A+GKI+ VLGD + + V++A+ HE+P+ +PQ V Sbjct: 284 IGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVL 343 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + A + V + GRVDLR +PLVTIDGEDA+DFDDAVYCE G+RL VAIADV Sbjct: 344 DEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPN-ADGFRLVVAIADV 402 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S YVRP TPLD EA+ R TSVYFP V+PMLPE LSNG+CSL P+VDR+C VC+M V Sbjct: 403 SNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGGD 462 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G +TG +FYEAVM+SHARLTY +VW + +GD D + PL+ ++ LH LY+VL KAR Sbjct: 463 GEVTGSRFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQVLSKAR 522 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 RG I FE+ E +F+ + + + RNDAHKLIEECMI AN+ AAR++ PA Sbjct: 523 THRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSMHVPA 582 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+H++P L E L LP +K P DY +LL+ V RPDA +L+++LLR Sbjct: 583 PYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLR 642 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 S A+Y PEN GHFGLAL++YAHFTSPIRRYPDL +HRA+K+ L G + E Sbjct: 643 SQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALT------GASPEK-- 694 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + Y+ +M L CS RRADEA R+V + + +M VG F GVIS VTGFG FV Sbjct: 695 FIYTPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTGFGLFV 754 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L ++GLVHV+ L DYY+FD + + L GE G+ +RLGD V V V +M+ERKID Sbjct: 755 ELTQSKVNGLVHVTQLPQDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKID 814 Query: 722 FSLI---SSERAPRNVGKTAREKAKK 744 F L ++ AP + +T+ ++ KK Sbjct: 815 FRLAEEGAAPEAPLPLRETSTKRKKK 840 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/726 (48%), Positives = 485/726 (66%), Gaps = 13/726 (1%) Query: 4 DPFQEREAEKYA-NPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 DPF RE +KY NP+PSREFIL L + K + ++A ++ E E L+ RL+AM Sbjct: 16 DPFFAREQQKYGDNPLPSREFILNWLEAQGKLLTFAQIARAFDMDAAES-EKLQIRLKAM 74 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 GQL+ R+ + + ++DL+ G V+ H++GYGF E + D ++ + M +HGD Sbjct: 75 LGAGQLMCNRQGRFGVARKMDLISGFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMHGD 134 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 ++LA+ D +GR++ V +L +IVG+ + GV ++PD+ RL+ ++IP D Sbjct: 135 KILARVKDTDERGRKDYAPVEILERAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPADA 194 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G + G VV+ E+T P+R + +GK+V VLG+ M GM VDIA+ H IP ++P+AV Sbjct: 195 LGGGKAGQVVIGEITAYPSRFQQPIGKVVAVLGEAMAAGMEVDIAIENHNIPAVFPEAVR 254 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 +Q + + + ++ GR+DLR LP VTIDG ARDFDDAVY E KRG +RL+VAIADV Sbjct: 255 EQCEKIPDALRDQDYEGRLDLRHLPFVTIDGISARDFDDAVYAE-KRGENYRLYVAIADV 313 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 ++YVRP +PLD EA NRGTSVYFP +VIPMLPE LSNGLCSLNP VDRL MVCE+T++ Sbjct: 314 AHYVRPDSPLDIEAYNRGTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEITLAPD 373 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDKAR 421 G + F++AV+ SHARLTY V IL D Q +RE +A L + L+ L +Y +L AR Sbjct: 374 GSIKRSAFHDAVIHSHARLTYETVEEILFLDNQMVRESFAALQRPLDNLKTVYGILRAAR 433 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 R I F + E +FI+++E +IE I+ R ++H+LIEECMI ANI AA+++ + K PA Sbjct: 434 LARSVIDFHASEPEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGRHKLPA 493 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLL 540 L+R+HD PS E + L + G++ G + P ++ LL ADRPD ++ M+L Sbjct: 494 LYRVHDHPSAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQIEIMVL 553 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM QAIY PENRGHFGLAL+ YAHFTSPIRRYPDL +HRAI++ L QG T + Sbjct: 554 RSMSQAIYIPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQL------QGGTRDN- 606 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 Y YS E M++ G+HCSM ERRADEATRD D+LKC+FM ++G F G I+++T FGFF Sbjct: 607 -YRYSAESMVEKGKHCSMTERRADEATRDAMDFLKCEFMSHRIGETFTGRIANITNFGFF 665 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V LDD++IDGLVHVS+L NDYY + L GE SG + L D VE++V V+++ERKI Sbjct: 666 VTLDDIYIDGLVHVSALTNDYYHYSAETFTLNGERSGTRFALMDAVEIQVAKVDIEERKI 725 Query: 721 DFSLIS 726 DF L++ Sbjct: 726 DFELLA 731 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/754 (48%), Positives = 494/754 (65%), Gaps = 33/754 (4%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 ++ KY PIPSRE IL L + P + +++A L I+ +E+ EG RR+ AMERDGQ Sbjct: 82 DKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQER-EGFFRRVAAMERDGQ 140 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 + +R Y L + V G V GHRDGYGF+ + +DDL+L + +M+ +H D+VLA+ Sbjct: 141 IRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLAR 200 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 +G DR+GR E +V V +++GR E G V P+D R+S DIL+ A+ Sbjct: 201 IVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVT-QNAKKAK 259 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 +G VVVVELT P+R ++ +G++ EVLGD GM ++IA+R + +P+ + + A Sbjct: 260 VGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAA 319 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK---RGGGWRLWVAIADVSY 304 L ++V RVDLRD+PLVTIDGEDARDFDDAVYCE RG G+RL VAIADVS+ Sbjct: 320 LPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSH 379 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV+P +PLD +A R TSVYFP +VIPMLPE LSNGLCSLNPQVDR + C+M ++++G Sbjct: 380 YVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGD 439 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHIL---QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 + Y+FY AV+ S ARLTYT+V +L +G + R A L+ HL+ L+ +YK L AR Sbjct: 440 IKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARR--AELMPHLQHLYGVYKALFVAR 497 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 ++RG I F++ E + NA+ +IE+I QRNDAH+LIEECM+ AN+ AA F+++ K P Sbjct: 498 QKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPG 557 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+H P+ E + + R+ L ++GL L GG+ P DYA L+ + DRPDA+MLQ MLLR Sbjct: 558 LYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLR 617 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI-------KYLLAKEQGHQG 594 SM+QA+Y P+N GHFGLA +YAHFTSPIRRYPDL HRAI KY +G + Sbjct: 618 SMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVEL 677 Query: 595 NTT-------------ETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFML 640 NT E G S + +LG HCS ERRADEA+RDV WLKC FM Sbjct: 678 NTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMR 737 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 D++G + G+++ VT FG FV+LD LFI+GLVHV+ L DY+++D+V L GE +G Y Sbjct: 738 DKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRY 797 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLI--SSERAPR 732 RL DRV V+V V++D RKIDF L+ + +APR Sbjct: 798 RLSDRVRVQVSRVDLDARKIDFRLVRETPVKAPR 831 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/797 (45%), Positives = 500/797 (62%), Gaps = 47/797 (5%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP +REAEKY NP+PSRE IL+ L + KP S + LA L ++ E ++ GL RR++AM Sbjct: 19 DPHADREAEKYENPVPSRELILDVLNDQGKPLSFELLAQLLEVDEEGEV-GLDRRIKAML 77 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGD 122 RD QLV R + R+DL+ G V GH+DG+GFL + + + DL+L+ QM+ + GD Sbjct: 78 RDAQLVQNRNGKVGVVSRMDLIAGRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMDGD 137 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +VL G +R G++EARIV + ++++GRY EAG+ F+ P++ R++ ++LI Sbjct: 138 RVLVSNAGYNRFGKKEARIVEITERVATEVIGRYSREAGISFIEPENRRITKEVLIEDKN 197 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G V +TQ P+R + ++ E++ GM V++ALR EIP++WP+ VE Sbjct: 198 GIKPNPGDHVRATITQYPSRDHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVWPEGVE 257 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VP E KA RVDLRDLPLVTID E ARDFDDAVY E++ GGWRL VAIADV Sbjct: 258 AAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIVAIADV 317 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+P + LD+EA RG SVYFP++VIPMLPE LSNGLCSLNP VDRLC+ C+M +S+ Sbjct: 318 SHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDMKISAN 377 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD--LREQYAPL----VKHLEELHNLYKV 416 GRLT + F E VM S RLTY KV I++ + ++ A L + + H ++ Sbjct: 378 GRLTRFIFREGVMRSRHRLTYNKVGAIIEEPESELAQDTVASLDDESLDMIWSFHEMFLA 437 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L + R ERG I F+S++ + I++ ++IE I QRN AH +IEE M+ ANI +A+ +EK Sbjct: 438 LRRRRAERGAIDFDSDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICSAKLLEK 497 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEM 534 A PAL+R H+ P E ++ + L LGL + G P+P + +L E + +RPD + Sbjct: 498 AGVPALYRNHEPPKEERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILERPDRNV 557 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 +QTM+LR+M QA Y+ EN+GHFGLA ++Y HFTSPIRRYPDL +HRAI++L+ + G Sbjct: 558 IQTMMLRTMSQAKYEAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLI-RSNGEPN 616 Query: 595 NTTETGG---------YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN 645 + G Y+ +M+ +G+ CSM ERRADEATRDV WLKC FM +G Sbjct: 617 HVDNPGNLPEIPRQKILPYNQADMVAIGEQCSMTERRADEATRDVVSWLKCQFMEAHLGQ 676 Query: 646 VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR 705 VF+G IS V FG FV+L DL IDGLVHV++LD+DYY FD+V L GES+G+ + LGD Sbjct: 677 VFEGAISGVASFGLFVQLSDLHIDGLVHVANLDSDYYHFDEVSLTLTGESTGRQFGLGDA 736 Query: 706 VEVRVEAVNMDERKIDFSLISSERAPR----------------------NVGK-----TA 738 V V V AV+ ++RKID L S + + N GK + Sbjct: 737 VTVCVAAVHTEDRKIDLQLESFTPSGKGRPKAASKKKPSGGRGKGGRSGNAGKAESGQSE 796 Query: 739 REKAKKGDAGKKGGKRR 755 REK KGD K KR+ Sbjct: 797 REKLAKGDIPKAKAKRK 813 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/751 (45%), Positives = 496/751 (66%), Gaps = 14/751 (1%) Query: 3 QDPFQEREAEKYA-NPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +DP+ RE EKY NP+PSREFIL L ++ K + ++ ++ E + + L R++A Sbjct: 12 RDPYYRREIEKYGKNPLPSREFILLWLEEQGKLLTFPQIVKAFNM-SEARGDLLHYRIKA 70 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M GQL+ R+ + ++DLV G VI H +GYGFL VEG DD ++ + M+ +HG Sbjct: 71 MIAAGQLMRNRQGFIGVSHKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHG 130 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ D +GR++ V +L ++VG+ G+ V+P++ RL+ I+IP Sbjct: 131 DKILARIKHVDGQGRKDYVPVEILQRGQKRVVGKLLNNQGIFSVIPENRRLTQPIMIPKA 190 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + A +V+ E+T P++ +A+G IV+VLGD M G+ V IA+ + IP + AV Sbjct: 191 ALGDAVANQIVLAEITAYPSKHQQAIGTIVKVLGDEMAAGLEVAIAIENYNIPNHFSDAV 250 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q+ + + + E R+DLR LP+VTIDG ARDFDDA+Y EK RG +RL+VAIAD Sbjct: 251 RAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEK-RGENYRLFVAIAD 309 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSYYV+P +PLD EA RGTSVYFP +V+PMLPE LSNGLCSLNP VDRLC+VCE+T++ Sbjct: 310 VSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELTITP 369 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 G++ KF++AV+ SHARLTY V IL D ++E +A L LE+L +Y++L A Sbjct: 370 SGQIKNSKFHQAVIQSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQILRTA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 RE+R I F+ +EA+F+F++E +IE I+ ++++LIEECM++AN++AA+F++K K Sbjct: 430 REKRQAIRFDFKEAEFLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQKHKLI 489 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 L+R+HDKPS E + A+LG + P + +A LL+ R D +L+ M+L Sbjct: 490 GLYRVHDKPSAERFEKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLEKMIL 549 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y ENRGHF LAL YAHFTSPIRRYPDL +HRAI++ L +E ++E Sbjct: 550 RSLPQALYSSENRGHFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEE------SSEVS 603 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 YS+E+M ++ +HCSM ERRAD+A+RD D+LKC+FM ++G+ F G ISSVT FG F Sbjct: 604 L--YSLEKMDEMAKHCSMTERRADDASRDAMDFLKCEFMSHRIGDEFFGEISSVTSFGLF 661 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + LD+ FIDGLVHVS+L +DYY +D RL+GE SG +Y+L D+V +RV VN++++KI Sbjct: 662 ITLDEFFIDGLVHVSTLPSDYYHYDADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKI 721 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKG 751 DF L+ E + + K R + K +KG Sbjct: 722 DFELL--EHQGKKLNKKKRTRTDKRGRARKG 750 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/808 (44%), Positives = 499/808 (61%), Gaps = 34/808 (4%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +QDP+ RE +KY +P+PSRE+I++ L P LA +L I + + E RRL+A Sbjct: 24 AQDPYLAREQQKYPHPLPSREWIIQLLETTGVPQKIPSLAKQLSI-ADSEYEFFERRLKA 82 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLSSEQMKTCI 119 M RDGQ++ RR E+L++VK V H+DG+GF + + DL L Q + + Sbjct: 83 MARDGQILINRRNLVCAAEKLEIVKCRVEMHKDGFGFAVPLIPTGEGDLVLYERQTRGVM 142 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 +GD V +PLG DR+GRRE +I+ ++ + IVGR++ E G+ + P+D RL+ ++++ Sbjct: 143 NGDIVTVRPLGLDRRGRREGQILDIIERAQTSIVGRFYLERGIAVLDPEDKRLTQNVILE 202 Query: 180 PDQI--MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 PD + G VVV E+T P AV +I EVLGD +GM ++IALR H++P+ + Sbjct: 203 PDSVAQFAPGEGQVVVAEITAYPENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHEF 262 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + A + E+V + RVDLRDLPLVTIDGE +RDFDDAV+ EK G +RL V Sbjct: 263 SAGCLKAAAKIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKI-GRNYRLVV 321 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVS+YV+P +D++A+ R TSVYFP +VIPMLPE LSNG+CSLNP V+RLCMVC++ Sbjct: 322 AIADVSHYVKPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCDI 381 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWH-ILQGDQDLREQYAPLVKHLEELHNLYKV 416 ++ G + Y+FY AVM SH RLTY +VW I Q Q+ P + L L+ L+K+ Sbjct: 382 EITFAGNIKSYRFYPAVMKSHGRLTYNQVWEWISQKTQN------PYSEQLNTLYKLFKI 435 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L K R RG + FE+ E + +FN +I+RI RNDAHKLIEECM+ AN+ AA F+ K Sbjct: 436 LQKKRHARGAMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLLK 495 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 K PAL+R H P+ E + + R L LGL+L GG+ P P+DYA L + +A+R D E+LQ Sbjct: 496 NKHPALYRNHAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELLQ 555 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 TMLLRSM+QA Y+P N GHFGLA + Y HFTSPIRRYPDL +HRAIK +LA Sbjct: 556 TMLLRSMQQAQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLA--------- 606 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 G Y + LG H S ERRAD+A+RDV +WLK +M D+VG VF G IS + Sbjct: 607 ----GTQYQA-DWQALGAHSSHCERRADDASRDVENWLKTYYMRDKVGEVFAGKISGMAN 661 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 FG FV LDD+ I+G+VHVS L DY+ + ++GE SG +++GDRV ++V ++D Sbjct: 662 FGIFVTLDDIHIEGMVHVSDLGEDYFNYHPETLSMIGERSGVQFKMGDRVVIKVARADLD 721 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK 776 KID L+S + +++R KAKK A G ++ GKK + G K Sbjct: 722 TSKIDLVLVSGGES-----RSSR-KAKKQAANDSGSLKKARGKKAAETAAAPIEGSAGKK 775 Query: 777 PKAAKKDARKAKKPSAKTQKIAAATKAK 804 + A K + K S K A +AK Sbjct: 776 SRKA-KGSLKTSNASFSEAKTEGANEAK 802 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 323/727 (44%), Positives = 470/727 (64%), Gaps = 18/727 (2%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DPF +RE++KYA+PIPSREFIL+ + K P ++EL L I+ E+ E L RL+A Sbjct: 13 SNDPFFKRESKKYAHPIPSREFILDVMKKCGTPIKKNELIKLLRIKKSEE-EALTHRLKA 71 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIH 120 M RDGQ++ R+ + + E+++ + G V GH DGYGFL E DD++L+ ++M H Sbjct: 72 MRRDGQILKNRKDVFCIAEKINCISGKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFH 131 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 D+V+ Q G DRKG+ E IV VL + +VGR GV V +D R+ DI+IP Sbjct: 132 NDRVMVQISGLDRKGKAEGTIVEVLERFNTVLVGRVVQSYGVTIVAAEDKRIHQDIIIPY 191 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + M A G +V VE+T +P K +G+I+EV+G +G+ ++IALR H +P+ + + Sbjct: 192 GKDMDAVPGDIVEVEITTQPAMNIKPMGQIIEVIGKLDDSGIEIEIALRKHNLPFRFDKK 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 +++++ + ++ + R+DLRD +TIDGE A+DFDDAVY E + ++L V IA Sbjct: 252 IDKELEKI-SDISDGDLKDRIDLRDNFFITIDGETAKDFDDAVYAENHKEF-FKLLVGIA 309 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ + LD+EA +RG SVYFP +VIPMLPE LSN LCSLNP VDRL M+ +M ++ Sbjct: 310 DVSHYVKEGSALDKEAFDRGNSVYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMVIT 369 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 KG + Y+FY AV++S RLTYT V ++ Q+ +E L++HL L ++Y+VL +A Sbjct: 370 KKGEVQSYEFYPAVINSKHRLTYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVLSEA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +R I F+ E++ +F+ +I+ I RN+AH+LIEECM+ AN+SAA ++ +K+ Sbjct: 430 RNKRHAIEFDRIESQILFDEGGKIKDIVPLTRNEAHRLIEECMLAANVSAADYL-LSKKI 488 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFR H+KP E + +SVL++ + + GG P DY EL+ + ++ + +MLQTM+L Sbjct: 489 GLFRNHEKPKDEKLEILKSVLSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQTMIL 548 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+QA Y N+GHFGLA Y HFTSPIRRYPDL +HR IK L K++ N Sbjct: 549 RSMQQANYGSVNKGHFGLAYDKYTHFTSPIRRYPDLVVHRLIKSFLNKKRLKTDN----- 603 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + +G HCS ERRADEATRDV +WLKC +M D++G F VISSVT FG F Sbjct: 604 --------LESIGNHCSSTERRADEATRDVENWLKCFYMKDRIGEKFDVVISSVTNFGIF 655 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V + L I+GLVHV+ L NDY+ F++ Q L GE + + +RLGD + V++ V+++ K+ Sbjct: 656 VEISRLHIEGLVHVTELGNDYFVFNKEKQMLEGEKTKKKFRLGDELAVKLIRVDLELGKM 715 Query: 721 DFSLISS 727 DF+ I + Sbjct: 716 DFTYIKN 722 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 308/671 (45%), Positives = 418/671 (62%), Gaps = 32/671 (4%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 + GTV GHRDG+GF+ + + D+YL +M+ +H D+V + D +GR E R+V + Sbjct: 19 ILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRIARHDHRGRPEGRVVEI 78 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + I+GR+ E+GV V P+D R D+LIP + A+ G VVVVELT+ P Sbjct: 79 VERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLIPSNATGAAKPGQVVVVELTEAPALFG 138 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 + VG+I EVLG+ GM ++IA+R + +P+I+ A +Q L E+V R+DL Sbjct: 139 QPVGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKALPEKVRPADYKHRIDLT 198 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGG---GWRLWVAIADVSYYVRPSTPLDREARNRGT 321 D+PLVTIDGEDARDFDDAVYCE + G GWRL VAIADVS+YV + +D +A +R T Sbjct: 199 DIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHYVTTGSAIDVDAYDRAT 258 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+M ++++G + Y+FY AVM SHAR Sbjct: 259 SVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEIHAYQFYPAVMHSHARF 318 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV---LDKAREERGGISFESEEAKFIF 438 TYT+V IL + + A + +++L NLY V L KARE RG + FE+ E + + Sbjct: 319 TYTEVAAILANTRG--PEAAKRKERVQDLLNLYGVFQSLLKAREARGAVDFETTETQIVC 376 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + RIE+I RNDAHKLIEE M+ AN+ +A F++++ + LFR+HDKPS E R Sbjct: 377 DDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFRVHDKPSLEKQEILR 436 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + L +G+ + P +++ ++ + DRPD++ + TMLLRSM QA Y PE GHFGL Sbjct: 437 NYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMMQAFYTPEGSGHFGL 496 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ------- 611 A ++Y HFTSPIRRYPDL +HR IK L + G M + L Sbjct: 497 AFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEAKMAKRLSSRVVEPG 556 Query: 612 -----------------LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 G HCS ERRADEA+RDV WLKC +M + +G F G +SSV Sbjct: 557 QKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEEFAGTVSSV 616 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 T FG FV LD ++++GLVH++ L DY+RFD+ Q L GE SG Y +G RV V+V V+ Sbjct: 617 TTFGVFVTLDAMYVEGLVHITELGGDYFRFDEARQELRGERSGVRYGIGARVRVQVSRVD 676 Query: 715 MDERKIDFSLI 725 +D R+IDF L+ Sbjct: 677 LDGRRIDFRLV 687 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 600 bits (1547), Expect = e-170, Method: Compositional matrix adjust. Identities = 323/722 (44%), Positives = 463/722 (64%), Gaps = 26/722 (3%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP+ +RE++KY PIPSR +IL K K EL L I+ Q + L RLRAM Sbjct: 3 DPYYKRESKKYNKPIPSRGYILSFFEK--KSHKLHELCNLLSID-HHQKKPLTHRLRAMV 59 Query: 64 RDGQLVFTRRQCY-ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 RD QL +R Y E+ ++ GTVI + G+GF+ ++ DL LSS+QM+ HGD Sbjct: 60 RDQQLNCDQRGVYHKFSEKNWVMTGTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFHGD 119 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +V + L R + +I++V + +VGR E +VV DD R+ +I I + Sbjct: 120 RVKVRLLNQ----RGDTQIIKV-IKSIETVVGRLHLEKDGAYVVVDDKRIKHNISIS--K 172 Query: 183 IMGARMG-FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 I + +V+V++T+ PT ++ AVG+IV++LG M G+ D AL + IP + Sbjct: 173 INREHLDEQIVIVKITKSPTLKSLAVGEIVQILGSYMDEGVETDSALYRNGIPVDFSPEA 232 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q L V + K GR+D+ + LVTID ED+RDFDDAVY + GW+L V+IAD Sbjct: 233 LIQTDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQTT-SKGWKLVVSIAD 291 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YV+ LD++A +RG SVYFP V+PMLPEVLSNGLCS+NP V+RLCM CEM + + Sbjct: 292 VSHYVKEGLYLDKDATDRGNSVYFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNIDT 351 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKA 420 G L YKFY AVM SHARLTYTKV IL+ D DL +QYA ++ +L L++LYK L A Sbjct: 352 HGNLLDYKFYPAVMLSHARLTYTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKALKYA 411 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 + +RG + F+ E++ +FN +I+ I RNDAHKLIEECM++AN ++A+F+ E Sbjct: 412 KIKRGVMDFDRIESQILFNDNGKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHHNED 471 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 L+RIH KP+ E + R L +GL L GG +P+ +D+A++L S R D +++T++L Sbjct: 472 FLYRIHPKPTVEKVEVTRQFLTAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKTVVL 531 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R+MKQA+Y P N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +L K+ Sbjct: 532 RTMKQAVYTPVNEGHFGLAFENYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPS------ 585 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 ++ML++G H SM ERRAD+A+RDV WLKC++M D++GN F GVIS V FG F Sbjct: 586 ------KKMLEIGAHLSMTERRADDASRDVEQWLKCEYMRDKIGNTFNGVISGVASFGIF 639 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + L D+F++G++ + + +DYY FD + +L GE +G+ Y+LG+ ++++V +VN+D+R++ Sbjct: 640 IELTDVFVEGMIAIRDMKDDYYIFDDIHHQLKGERTGKIYQLGNTIKIQVASVNLDDRQM 699 Query: 721 DF 722 F Sbjct: 700 AF 701 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 310/755 (41%), Positives = 446/755 (59%), Gaps = 39/755 (5%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M+ +P + Y NPIP REFIL K +K +R+++A L ++ EQ E LRRRLR Sbjct: 1 MNLNPTAPLSSPIYDNPIPGREFILSLFGKMKKNLNREQIAHALELKNAEQKEALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQL+F++ + Y + ++ LV G + H DG+GF+ + DL+++ Q+ Sbjct: 61 AMERDGQLMFSQHKGYQVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFE 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFV-VPDDSRLSFDILIP 179 GD V A K R ++++++ KT+ + G G +V V D+++ + + Sbjct: 121 GDIVQILQEAASHK-RSNNKLIKIIEHKTTHLAG-ILKRQGTDYVLVADNTKCPQKVQVA 178 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 Q+ +G V ++TQ PT R +I EVLG GM +ALR H + W + Sbjct: 179 QCQLANTSVGQYVNTKITQYPTFRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSK 238 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 + Q + L EV E+ K RVD R P VTIDGEDA+DFDDAVYCE+ G WRL VAI Sbjct: 239 DLLAQASSLGNEVTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAI 298 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVS+YV+P+ LD EA+ R TS+Y P QV+PMLPE LSNGLCSLNP DRL +VC+MT+ Sbjct: 299 ADVSHYVKPNDVLDIEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTI 358 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ--------DLREQYAPLVKHLEELH 411 S G++T F E ++ SHARLTYT+ ++ +L +PL+K+ LH Sbjct: 359 SQDGQVTQANFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAELNADVSPLIKN---LH 415 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 LY L AR+ RG I F+++E K N ++I IE +RNDAH++IEE M+ AN+ A Sbjct: 416 YLYLDLSAARKLRGAIDFDTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTA 475 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD 531 +F++K + P LFR+H P + + + R++LAE L+L GG+KP P DY +LL +++ R D Sbjct: 476 QFLDKHQIPGLFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSD 535 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 A +++T+LLRS QA Y N+GHFGLA +YAHFTSPIRRY DL HRAI+ AK Q Sbjct: 536 ASVIRTLLLRSQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIR---AKIQA 592 Query: 592 HQGNTTETG--------------------GYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 Q N + Y Y++E + L HCS R+A++ +R+V Sbjct: 593 KQQNGLQRAISFLNVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDISREVE 652 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 LKC +M +G+ F IS V+ GFFV LD ++GLV VSS + F+ Q+ Sbjct: 653 SALKCSYMEKYLGDTFTATISGVSSAGFFVELDCTGVEGLVPVSSFSQGEFVFNAAKQQW 712 Query: 692 MGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 +S Q + +G+RV V ++++++ +RK+ FSL S Sbjct: 713 --SNSKQKFTIGERVNVTLKSIDLRQRKMSFSLAS 745 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 316/744 (42%), Positives = 439/744 (59%), Gaps = 21/744 (2%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP + EAE+Y NPIPSR IL L + + P S EL I ++ ++ L RL AM Sbjct: 19 DPEAKAEAERYDNPIPSRTLILTTLEQLDLPQSHAELVDHFDIHDQKSIDALSHRLIAMV 78 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 RDGQL + + E+ TV + G+G ++G ++DL L +++ +GD+ Sbjct: 79 RDGQLSKDGFKFQPIGEQPTF-DATVYINNKGFGSAHIDG-QNDLLLPERELRLVFNGDR 136 Query: 124 VLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 V + DRKG+ I V + Q++G+ G F+ P I + + I Sbjct: 137 VKVRQTSVDRKGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELI 196 Query: 184 --MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 A++G + V + PTR + G I++ + D T + + + +PY +P+ V Sbjct: 197 EHAQAKVGENLRVAIDDYPTREEFSTGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEEV 256 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 + KE ++ + GR+DLRDLPLVTIDGEDARDFDDAVY EK+ GGG+R+ VAIAD Sbjct: 257 VKDAESFKEPSKKDIE-GRIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIAD 315 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVR PLD EA+ RGTSVYFP V+PMLPE LSNGLCSLNP VDRLCMVC++ +S Sbjct: 316 VSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSR 375 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 GR+ Y+FY +VM S ARLTYT+V + G D + K L L LY+ L R Sbjct: 376 AGRVMSYEFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGLR 435 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +R + FE+ E F+ I+ I RN+AHKLIEECM+LAN++AA F + P Sbjct: 436 AKRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIPM 495 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+H+ P I + + LGL P ++P DY ++E+ DR DA + +LLR Sbjct: 496 LYRVHEAPEFSRIQKVKDFVKLLGLPFP--DQPTQADYQRVIEATKDRIDAPSIHAVLLR 553 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM QA Y +N GH+GLA ++Y HFTSPIRRYPDL LHRAIK L ++ Sbjct: 554 SMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKP----------- 602 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 Y S + G+ S ERRADEA+R V WLKC +M +G F G+IS+VT FG FV Sbjct: 603 YPLSGAALDDAGEQFSRTERRADEASRSVTTWLKCHYMKQHLGEEFIGIISAVTEFGLFV 662 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L DL++DG++HVS L +D++ +DQ Q L+G++ GQ + LGD V+++V AVN+DERKID Sbjct: 663 TLKDLYVDGMIHVSQLGDDFFLYDQASQSLVGQNRGQIFGLGDEVKIKVAAVNLDERKID 722 Query: 722 FSLISSERAPRNVGKTAREKAKKG 745 F L+ + + G+ R+KA + Sbjct: 723 FELM---QQITHAGRVIRQKAPRS 743 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 298/729 (40%), Positives = 432/729 (59%), Gaps = 19/729 (2%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DP ++ EA+KY NPIPSRE IL ++ P S + +A L I + +GL RL Sbjct: 6 IHNDPNKDLEAQKYENPIPSREVILNYIRDTNIPVSIENIANALEIFKKNLFDGLVNRLG 65 Query: 61 AMERDGQLVFTRRQCYALPERLDL-VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 AM RDGQL R Y+LPE + + V RD L + + S Q K + Sbjct: 66 AMVRDGQLE-KDRSYYSLPEIAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQAKMVM 124 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDI-LI 178 GD+V A+ LG +++GR +A I ++ I G Y+ F+ P ++ DI L+ Sbjct: 125 VGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVSKSMTSDIVLL 184 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 PP Q + ++ E+ P+ + AV K + + A+ +A + +++ W Sbjct: 185 PPKQKI--EHNSLIEAEIIVYPSINSVAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQWS 242 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + + + + ++V RVDLR+ VTIDGEDA+DFDDAVY K + G W+L+VA Sbjct: 243 KKTLRYLDDISDDV---IVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVA 299 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV + LD +A+ R TSVYFP VIPMLPE LSNGLCSL P DR +VCEM Sbjct: 300 IADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMN 359 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVL 417 +S +G+L+ YKFY AV++S ARLTYT+V +++ Q+ + E+ LV ++ +L+ LYKVL Sbjct: 360 ISKEGKLSRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVL 419 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 +AR+ERG I F++ E + I N IE I RNDAH+LIEECM++AN++AA+F K Sbjct: 420 HQARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKH 479 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN--KPEPRDYAELLESVADRPDAEML 535 K+ + FR+H +P + + + + LA+ G+ L G K P+ AE+L+S+ DRPD + + Sbjct: 480 KKTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDI 539 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 Q M LRSM QA+Y N GHFGLA Y HFTSPIRRYPDL +HR IK ++ + Sbjct: 540 QMMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGE------- 592 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 E GG Y E+ + ++ S ER AD A++ V +WLKC FM D +G+V + I V Sbjct: 593 -YEHGGADYKPSELANICENASDQERNADGASKQVENWLKCYFMQDYIGHVLEAQIKHVN 651 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G G F L D++I+GL+HVS++ DYY +D+ L+G+ + + Y++G + VRV ++ Sbjct: 652 GLGLFAELKDMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADL 711 Query: 716 DERKIDFSL 724 D IDF L Sbjct: 712 DRIHIDFEL 720 >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 282/728 (38%), Positives = 435/728 (59%), Gaps = 14/728 (1%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP + EL L+I E+ + L + L A+E G +V TR Y +PE+++L+KG + H Sbjct: 20 KPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRSDRYGIPEKMNLIKGKISAH 79 Query: 93 RDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQ 151 G+ FL E D+++ ++ T ++GD V+ + R+E ++R+L + Sbjct: 80 AKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSSGSRQEGTVIRILERAIQR 139 Query: 152 IVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 +VG Y GFV+PDD +++ DI IP + GA G VVV+LT P R A G++ Sbjct: 140 VVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKVVVKLTSYPEGRMNAEGEVE 199 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 +LG G+ + + H +P +P +Q + + + E+ R DLRD +VTI Sbjct: 200 TILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDLKDRRDLRDQVIVTI 259 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DG DA+D DDAV K G ++L V IADVS+YV ++P+D+EA RGTSVY +VIP Sbjct: 260 DGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIP 319 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL- 390 M+P LSNG+CSLNP+VDRL + CEMT++S+G++T ++ +++V+ + R+TY+ V IL Sbjct: 320 MIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKILV 379 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 D++L+++Y PLV +++ L ++L R +RG + F+ +EAK + + E ++ + Sbjct: 380 DDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAKVLVDDEGAVKDVVIR 439 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +R+ A KLIEE M++AN + A P ++RIH++P+ E + F + G + G Sbjct: 440 ERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNAEKLQKFLEFVTTFGYVVKG 499 Query: 511 --GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTS 568 GN PR +L++V DRP+ ++ T++LRSMKQA YDP++ GHFGL+ + Y HFTS Sbjct: 500 TAGNI-HPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDPQSLGHFGLSTEFYTHFTS 558 Query: 569 PIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATR 628 PIRRYPDL +HR I+ L G E ++ E + + +H S ERRA +A R Sbjct: 559 PIRRYPDLIVHRLIRTYLI-----NGKVDEATQEKWA-ERLPDIAEHTSSMERRAVDAER 612 Query: 629 DVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVG 688 + D K ++MLD++G F G+ISSVT FG FV L + I+GLVHVS + +DYYRFD+ Sbjct: 613 ETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNT-IEGLVHVSFMTDDYYRFDEQH 671 Query: 689 QRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAG 748 ++GE +G +R+GD + V+V VN DER IDF ++ + PR + +++K G Sbjct: 672 FAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPRELDSSRSRK--RG 729 Query: 749 KKGGKRRQ 756 K KR Q Sbjct: 730 KPARKRVQ 737 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 303/746 (40%), Positives = 424/746 (56%), Gaps = 21/746 (2%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQ 114 L+R L M +DG+LV R YAL ++G + HRDGYGF+ +G +D+++ Sbjct: 37 LKRMLDDMAQDGELVRFRGNSYALASAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRH 96 Query: 115 MKTCIHGDQVLAQPLGADRK----GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDS 170 M+ +HGD V A+R G+ E RI V+ S++VGRY V+P+++ Sbjct: 97 MRGAMHGDTVEVH---AERSRMGGGKFEGRITSVVERGVSRVVGRYEETRRGAIVIPEET 153 Query: 171 RLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 RL+ I IPP A+ G VVVEL+ P A G +VEVLG + V A+R Sbjct: 154 RLNLVIAIPPKGRGLAQDGQQVVVELSSYPVGGRPAEGNVVEVLGWPDDPEVEVQSAIRR 213 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 ++P+++ + + E VP + AGRVDLR L VTIDGE ARDFDDAV ++ G Sbjct: 214 FDLPHVFAPDTLAEAEAIPETVPAQELAGRVDLRPLATVTIDGETARDFDDAVSL-RREG 272 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 +RLWV+IADVS+YVRP +PLDR+A RGTSVYFP + IPMLPE LSNG+CSLNP V+R Sbjct: 273 DNFRLWVSIADVSHYVRPDSPLDRDAYLRGTSVYFPDRCIPMLPERLSNGICSLNPGVER 332 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH-ILQGDQDLREQYAPLVKHLEE 409 L M EM G + FY +++S ARLTYT+V I+ D++ + + L E Sbjct: 333 LTMTAEMLFDRDGSMLESSFYPGIIASAARLTYTQVKRVIVDQDRETADSLGTVTPMLLE 392 Query: 410 LHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS 469 + L +L R +RG I F+ E++ I E I + +R AH+LIEE M+ AN + Sbjct: 393 MKELALILMGMRRKRGSIDFDLPESEVIIGLTGLTEGIVRAERTLAHQLIEEFMLAANEA 452 Query: 470 AARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAELLESVAD 528 A F+ + P L+RIH+ P + +F+ G E P + P D LLES A Sbjct: 453 VALFIAEKGIPLLYRIHENPDPAKLINFQEFAFGFGYEFPLKEERVNPADLQRLLESAAG 512 Query: 529 RPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAK 588 RP+ M+ LLR MKQA Y EN HFGLA + Y HFTSPIRRYPDL +HR +K LLA Sbjct: 513 RPEERMINYALLRCMKQARYAAENLHHFGLASRCYCHFTSPIRRYPDLVVHRILKALLAL 572 Query: 589 EQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFK 648 + ++G+ + + ++G+H S ER A EA RD+ + K FM +G F Sbjct: 573 AE-NRGSKQAEKRLSLATHNLSEVGEHTSKRERVAMEAERDIVELKKAQFMQQHLGEEFD 631 Query: 649 GVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 G I+ VTGFGFFV L++LF++GLVHVS+LD+D Y F + L+G + G+ R+GDR V Sbjct: 632 GFITGVTGFGFFVELEELFVEGLVHVSTLDDDLYTFVENRHSLVGRNRGRVLRIGDRARV 691 Query: 709 RVEAVNMDERKIDFSLI----SSERAPRNV---GKTAREKAKKGDAGKKGGKRRQVGKKV 761 RV +V+ R+I+F L+ S+ + P G+ R + +G +R G K Sbjct: 692 RVASVSPATRRIEFVLVGHASSTPQMPLTTAGDGEFPRTPIRGKRLPGQGRERNAEGTKP 751 Query: 762 NFEPDSAFR-GEKKTKPKAAKKDARK 786 + P + R G+K+TK A + RK Sbjct: 752 S--PAAGRREGQKRTKKGAVRTGGRK 775 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/764 (37%), Positives = 440/764 (57%), Gaps = 32/764 (4%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIG 91 +K + ++L +E+ + + + + + L +E G +V +R+ YALPE++DLVKGT Sbjct: 19 DKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRA 78 Query: 92 HRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTS 150 H G+GF+ E ++ DD+++ ++K ++GD V A E I +++ KT+ Sbjct: 79 HERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTT 138 Query: 151 QIVGRYFTE-AGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 QIVG Y + AG V+PDD RL ++ I + + G V+VELT+ T +A G Sbjct: 139 QIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGV 198 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 + ++G G+ + + H I +P+ V +QV+ + V + R DLRD ++ Sbjct: 199 VKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMII 258 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TIDG DA+D DDAV + G W+L V IADV++YV +PLD EA+ RGTSVY +V Sbjct: 259 TIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQERGTSVYLVDRV 318 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 IPMLP LSNG+CSLNPQVDR M CEM + +G + ++ +E+++ + R+TYT V I Sbjct: 319 IPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESIIKTTERMTYTDVNDI 378 Query: 390 L-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIE 448 L + D+ LRE+YAP+V LE++ +L ++L + RE+RG I F+ +EA+ + + + E + Sbjct: 379 LVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVV 438 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 +R+ LIEE M+ AN + A P ++RIH+ P + + F + GL + Sbjct: 439 MRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIV 498 Query: 509 PG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 G N P ++LE V +P+ ++ T++LRSM+QA YD + GHFGL+ Y HFT Sbjct: 499 KGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFT 558 Query: 568 SPIRRYPDLTLHRAIK-YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 SPIRRYPDL +HR I+ YL+ + + T E EE+ ++ +H S ERRA EA Sbjct: 559 SPIRRYPDLIVHRLIREYLINGDV--RPETLEKRA-----EELPEIAEHSSKMERRAVEA 611 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R+ + K +FM+D+VG F G+ISSVT FG F+ L I+GLVHVS++ DY++F Q Sbjct: 612 ERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTT-IEGLVHVSAMKGDYFKFHQ 670 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGD 746 ++GE +GQ YR+GD VEV V V++D R+IDF+L S + K R++ K D Sbjct: 671 NQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPID 730 Query: 747 AG-------KKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKD 783 KKG +R+ G +TKPK +KD Sbjct: 731 KTRNFKSNQKKGRNKRRTG------------NSDETKPKTERKD 762 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 282/770 (36%), Positives = 443/770 (57%), Gaps = 41/770 (5%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP ELA I ++ + ++ L ME++G ++ TR + Y +P R++L+ G + GH Sbjct: 17 KPMDIKELARIFDIRKKD-MHMFQQVLDDMEKEGTIIKTRTENYGVPARMNLIIGKLQGH 75 Query: 93 RDGYGFL--RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKT 149 G+GF+ EG KD +++ S QM IHGD+V+A+ ++ G++ E I+R+L T Sbjct: 76 SKGFGFVIPDEEGVKD-VFIPSSQMGGAIHGDRVVAKITFGEKNGKKCEGEIIRILERNT 134 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT-RRTKAVG 208 +++G Y GFV+P+D R+SFDI +P + GA+ G VV+ E+ + P R G Sbjct: 135 KEVIGTYEDSRNFGFVIPEDKRISFDIFVPKNFRSGAKTGQVVICEILEYPDDSRRNPEG 194 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 KI +LG+ G+ + ++ H +P +P V + EE+P++ A R DLRD+ + Sbjct: 195 KIKNILGNKGDKGIDILTIIKKHGLPEEFPAKVLDAAESIDEEIPDKEIARRRDLRDMMM 254 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 VTIDGEDA+D DDAV K G + L V IADV++YV+ S+ LD EA RGTS Y + Sbjct: 255 VTIDGEDAKDLDDAVSLSKLDNGNYYLGVHIADVTHYVKESSKLDNEAFLRGTSTYLIDR 314 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 VIPMLP LSNG+CSLNP+VDRL + C M ++ KG++ ++ E+++ ++AR+TYT V Sbjct: 315 VIPMLPRKLSNGVCSLNPKVDRLTLTCFMEINDKGKVENHEIVESIIKTNARMTYTNVTK 374 Query: 389 ILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERI 447 IL+ DQ+L E+Y LV + + L +L+ R++RG + F+ +E K I N + I Sbjct: 375 ILRDKDQELIEEYKELVPMFQAMEELQHILEAKRKKRGAVDFDFQECKIILNEMGKPVDI 434 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 + +R A+K+IEE M+ N + A + +K P ++RIH++P+ E + F LG Sbjct: 435 KPYERAIANKIIEEFMLACNETIAEHMFWSKMPFVYRIHEEPNEEKLEHFNEFARNLGYV 494 Query: 508 LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 + + P+ E++E V + + ++ T+LLRSM QA Y PE+ GHFGLA + Y HFT Sbjct: 495 VKKTKEVHPKHLQEIVEQVKGKKEETVINTLLLRSMMQARYSPESLGHFGLAAKYYCHFT 554 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ-HCSMAERRADEA 626 SPIRRYPDL +HR IK + G E Y + ++ S ER A +A Sbjct: 555 SPIRRYPDLQIHRIIKSFI------NGKIDEK--YMKKLTVTVEKASLQSSERERAAQDA 606 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R+V D K ++M D++G V++G+ISSVT FG FV L++ ++GL+H+S+L++DYY +D+ Sbjct: 607 EREVDDLKKAEYMSDRIGEVYEGIISSVTNFGMFVELENT-VEGLIHISTLNDDYYVYDE 665 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGD 746 L+GE + YRLGD +++ V+ V++ +I F + + + + E+ K Sbjct: 666 DRLWLLGERTKNIYRLGDSIKIIVDKVDLAAHEIYFEVFKEDNIEDKIEEYKDEEEK--- 722 Query: 747 AGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQK 796 F+G+KK P+A KK K + S + Q+ Sbjct: 723 ---------------------FFKGDKKDLPEAVKKQLLKDLETSLEDQQ 751 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 287/754 (38%), Positives = 435/754 (57%), Gaps = 28/754 (3%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 ++ EH T P S DEL L +EG + L+ ++ +E GQ++ TR Y LP + Sbjct: 13 YMKEHPTA---PLSADELLQALTLEGAD-LKLFWTVMKELEDRGQVIKTRFNIYGLPAAM 68 Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDD--LYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 LV G G+ F+ E + +D L++ + + + GD V+A+ + + R+E + Sbjct: 69 GLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGYDDRQEGK 128 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 I+R+L ++VG + GFV+PD+ R+ DI + GAR VVVE+T P Sbjct: 129 IIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVRRKDFNGARDKEKVVVEITTWP 188 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 R A GKIVE+LG G+ + ++ +++P +P V+ +++++ ++ R Sbjct: 189 DERRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQKIKKKEIQNR 248 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +D RD ++TIDG D++D DDAVY EK+ G + L V IADVSYYV+P + LD+EA RG Sbjct: 249 LDRRDWNIITIDGVDSKDLDDAVYVEKQ-GDNYFLGVYIADVSYYVQPHSVLDQEAYERG 307 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFYEAVMSSHA 379 TSVY +V+PMLP LSNG+CSLN DRL M CEM + K GR + V+++H Sbjct: 308 TSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFTIAPCVINNHH 367 Query: 380 RLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+ Y V IL D+ LRE+YA +V LE++ L +VL K RE RG I+FE E K + Sbjct: 368 RMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAINFELPEQKVLL 427 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + ++ I + +R+ A LIEE M+ AN + A F+ + K P ++R+HD P E I + Sbjct: 428 DDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDLPDPEKIQNLA 487 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 ++A G+ L K P+D L+ VA +P+ +++ T+ LRSM+QA+Y EN GHFGL Sbjct: 488 KLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVYQTENIGHFGL 547 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A Y HFTSPIRRYPDL +HR ++ L E+ + E + + + HCS+ Sbjct: 548 AAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEE------RTQRLSLVASHCSV 601 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A +A R D ++M+ VG F G IS V+ FGFFV LD+ ++GLVHVSSL+ Sbjct: 602 RERAAIDAERQTVDLKMAEYMVQFVGKEFTGTISGVSSFGFFVELDN-GVEGLVHVSSLN 660 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI-----SSERAPRN 733 +DYY + + L+G+ G YRLGD+V+++V V++ ERKIDF L ++++ R Sbjct: 661 DDYYDYIEGQYALIGQHLGHRYRLGDQVDIQVLQVDVAERKIDFVLAGLAPEAADQMRRE 720 Query: 734 VGKTAREKA-------KKGDAGKKGGKRRQVGKK 760 +G+ + K + G+K G+R++ GKK Sbjct: 721 LGRQKKTKTGIATGKLRNDTTGRKSGERKESGKK 754 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 277/710 (39%), Positives = 408/710 (57%), Gaps = 30/710 (4%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP + EL I + + + L +E +G+++ TR + Y +PER++L++G + H Sbjct: 17 KPMTYQELEQHFGINDAAEFKEFLKLLNQLEEEGKVIRTRNERYGVPERMNLLRGKIQAH 76 Query: 93 RDGYGFLRVEGRKD--DLYLSSEQMKTCIHGDQVLAQPLG-ADRKGRREARIVRVLVPKT 149 G+ FL + KD D+Y+ + K+ ++GD L + ++ GR E +VR++ Sbjct: 77 AKGFAFL-LPDEKDHPDVYIHANDQKSAMNGDIALVRITSQSEGGGRMEGEVVRIVQRAV 135 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 +Q+VG + + GFVVPDD R++ DI IP + GA G VVV++T P R+ A G+ Sbjct: 136 TQVVGTFESHEAFGFVVPDDKRINRDIFIPKGEFQGAVTGQKVVVKITSYPEGRSAAQGE 195 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE--AKAGRVDLRDLP 267 I+E+LG G+ + +R H++P + V + + + EE + GR DLR Sbjct: 196 IIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAEAAPDSITEEEIVEQGRRDLRGEV 255 Query: 268 LVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS 327 +VTIDGEDA+D DDAV+ ++ G + L V IADV YYV+ + LD+EA RG SVY Sbjct: 256 IVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGYYVKERSALDQEAFRRGCSVYLVD 315 Query: 328 QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW 387 +VIPMLP LSNG+CSLNPQVDRL + CEM SK + + + +V+ + R+TYT V Sbjct: 316 RVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLKRVRHDIFTSVIKTKERMTYTNVR 375 Query: 388 HILQGD-----QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 IL +L+E+YA L+ + L L K R +RG I F+ +E+K I + E Sbjct: 376 KILMATEEEPETELKERYADLLDMFTLMEELAMKLRKKRMKRGAIDFDFQESKVIVDKEG 435 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 + I + +R+ A ++IEE M+ AN + A + P L+RIH+ P E + F + Sbjct: 436 KAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPFLYRIHEDPDQEKLLHFMQFAS 495 Query: 503 ELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 G + G GN PR LLE + + ++ T++LRSMKQA YD E+ GHFGLA + Sbjct: 496 NFGYVVKGKGNSVHPRALQTLLEEIHGTKEETVISTVMLRSMKQAKYDAESLGHFGLAAE 555 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE------MLQLGQH 615 Y+HFTSPIRRYPDL +HR I+ +L E GG + M + QH Sbjct: 556 FYSHFTSPIRRYPDLVIHRVIREVL-----------ENGGALPEIRNEALAARMPDIAQH 604 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ER A +A RD KC+FMLD+VG F G+ISSVT FG FV LD+ ++GL+ +S Sbjct: 605 SSERERVAVDAERDTDKLKKCEFMLDKVGEEFDGIISSVTSFGMFVELDNT-VEGLIRLS 663 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L +DYY F ++ L+GE + + YR+GD V++RV VNMD+ IDF ++ Sbjct: 664 GLTDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDDYTIDFEMV 713 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 279/729 (38%), Positives = 424/729 (58%), Gaps = 18/729 (2%) Query: 5 PFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 P + A+ A P+ E +L L REK AS E+A L + + + L++ L ++R Sbjct: 62 PRGGKSAKPGAGPV---EAVLAFLHGREKGASATEIAAALAEQPDFDRQLLKKTLEELDR 118 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD------DLYLSSEQMKTC 118 G LV +RR Y+L L++ + H G+GF + D D++L + M + Sbjct: 119 RGWLV-SRRSRYSLAPDLEICPAELSMHPRGFGFAMLSESTDAARYHKDIFLPPDAMGSA 177 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 +HGD++L + R + E R++RVL + +VG Y + A G V P+D RL F +++ Sbjct: 178 VHGDKILVLVVKG-RADKAEGRVLRVLERGITSLVGIYVSGATSGLVTPEDERLPFKVVV 236 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 Q GAR G VVVE++ R + G+IVEVLGD + ++IA+R+H++P+ + Sbjct: 237 RRPQSGGARNGEAVVVEIS-RFKEQGNPEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFA 295 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 A+ +V +++ E +A R+DLR++P VTID E ARD+DDAV E GG RL+V+ Sbjct: 296 PALLAEVEAYSDKI--EPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVS 353 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS+YV+P + LD EA RGTSVYFP +V+PMLPE LSN LCSL P DR M + Sbjct: 354 IADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIID 413 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVL 417 KG+ +F ++++ S RLTYTKV +L+ + +L +YA ++ LE++ L L Sbjct: 414 FDGKGQRKSARFGKSLIRSRHRLTYTKVKAMLEDREPELCRRYADILPDLEQIAKLAANL 473 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 ++ R RG I FE EA + + + I+ I + +RN AHKLIEECM+ AN + A F+E+ Sbjct: 474 NQVRMRRGSIGFEIPEADIVLDDDGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQ 533 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P L+RIH+ P +T F +GL+LP G +P P + ++L A P ++ + Sbjct: 534 QAPTLYRIHEDPDPVKVTEFAEFAGAMGLQLPKG-EPGPGWFGQVLALAAGTPREYIVSS 592 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 +LLRS++QA Y PEN GHFGLA Y HFTSPIRRYPDL +HR + L A E G + Sbjct: 593 LLLRSLQQARYAPENVGHFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQK 652 Query: 598 ETGGYH--YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + G ++ G S ER A +A R+ + L +M D+VG F V+S ++ Sbjct: 653 QPVGAQGLAPAADLATAGLELSRRERVAVDAERNATERLVALYMADKVGEEFDAVVSGIS 712 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L ++ I G V ++ L +DYY D RL+G +S + +++G+ + VR+ +V+ Sbjct: 713 SFGMFVELVEIMISGAVALTDLTDDYYEVDDKSHRLVGRNSNRIFQIGNPIRVRLSSVDQ 772 Query: 716 DERKIDFSL 724 R+++F + Sbjct: 773 RRRRLNFVI 781 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/815 (34%), Positives = 443/815 (54%), Gaps = 116/815 (14%) Query: 24 ILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 IL+H+ ++ + A+ +L E+ + G ++ + L RRL ++ + G+LV YA+ + Sbjct: 7 ILDHIERQAHQSANFKQLVREMRLRGPDR-DQLGRRLESLVKRGKLVTAAAGRYAMVKTT 65 Query: 83 ---DLVKGTVIGHRDGYGFLR---------VEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 +L+ G + HRDGYGF+ +EG D+Y+ + + +HGD+VLA+ + Sbjct: 66 RAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEG---DIYIPPHAIGSAMHGDEVLAEIVA 122 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP---------- 180 + GR E RI+R L + +VG + + V FV P D +++ DI+IP Sbjct: 123 TKKDGRAEGRILRTLNRAHTSVVGTFHYDK-VNFVRPIDEKITQDIVIPKGMEWPPDVER 181 Query: 181 ------------DQIMGARM---------GFVVVVELTQRPTRRTKAVGKIVEVLGDNMG 219 D+++G VV VE+T+ P+ G++VE+LG Sbjct: 182 EEGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQSPRGRVVEILGYEDD 241 Query: 220 TGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDF 279 G+ +I +R H +P+ +P AV + E+P + R D R+LP+VTIDGE ARDF Sbjct: 242 FGVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDF 301 Query: 280 DDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSN 339 DDAV G + L V IADV++YV + +D EAR RGTSVYFP + +PMLP LS Sbjct: 302 DDAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELST 361 Query: 340 GLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ 399 +CSL PQV+RL + C M + +G + GY+ E V+ S R+TYT V +LQGD +LR + Sbjct: 362 DICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRSAERMTYTAVHGVLQGDTELRTR 421 Query: 400 YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLI 459 YAPLVK+ E + +L +L+K R++RG I F+ E F+ ++ + +++RN+AH+LI Sbjct: 422 YAPLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRLI 481 Query: 460 EECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP----- 514 EE M+ AN S A ++E K +L+RIH+KP + + F ++ A G L G+ P Sbjct: 482 EEFMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERVH 541 Query: 515 --------------------------EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 PR Y +L + + +P+ +L ++LRS++QA Y Sbjct: 542 LKADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQARY 601 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN----------TTE 598 +N GHF LA SY HFTSPIRRYPDL +HR +K +L KEQ + + E Sbjct: 602 SEKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVL-KEQAEKNDHGVPVGVGGAVNE 660 Query: 599 TGGYH-------------------------YSMEEMLQLGQHCSMAERRADEATRDVADW 633 G+ E++ Q+ + S AERRAD+A R++ +W Sbjct: 661 VDGHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEW 720 Query: 634 LKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMG 693 K FM D+VG F G+I SVT +G FV L DLF++GLV + +L D++ + + ++L+G Sbjct: 721 KKIKFMQDRVGEEFTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFNYHENTKQLIG 780 Query: 694 ESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 E S +TY LGD+V V ++ ++ +RK+ F+++ E Sbjct: 781 ERSRKTYSLGDKVRVILDRIDRMQRKLQFAVVEDE 815 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/698 (39%), Positives = 396/698 (56%), Gaps = 16/698 (2%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTV 89 R KP S ++ + + +++ LR L ++ +G + R+ ++LP ++V G V Sbjct: 15 NRGKPLSGRQIVSQFQLSRDQRQHALRM-LDSLADEGLVRRVRKGLFSLPRSSEMVVGKV 73 Query: 90 IGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPK 148 HR GYGF+ E + D+++ + M+ + GD+V + + R G E R++RVL Sbjct: 74 SVHRQGYGFVIPEAAGQADVFIPARYMREVMDGDRVAVRVQRSSRGGY-EGRVLRVLSRA 132 Query: 149 TSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVG 208 IVG Y G G V+P D LS I++ A G +VVV + Q P RR G Sbjct: 133 HQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSPAPGDAHAGDLVVVSIAQYPGRREPPRG 192 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 +VEVLGD + + A +P + A +Q + V EE AGR DLR Sbjct: 193 VMVEVLGDPADPQVEILAAAYKFNLPREFSTATLEQARSIAPVVREEDLAGREDLRSTLF 252 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 VTIDGE A+DFDDAV ++ GG RLWVAIADV +YV P +P+DR+A+ RGTSVYFP Sbjct: 253 VTIDGETAKDFDDAVAVSREPGGCMRLWVAIADVGHYVAPDSPIDRDAKERGTSVYFPGS 312 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 +PMLPE LSNG+CSLNP VDRL + EM +G + +F+ AV+ S ARLTY +V Sbjct: 313 CLPMLPEALSNGICSLNPGVDRLVLTAEMLFDKQGVMLESRFFHAVICSKARLTYREVAD 372 Query: 389 ILQGDQDLREQYA-PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERI 447 +L + PL+ L + L L R RG + F+ E + + + + R ++I Sbjct: 373 VLAAGAIHNPALSDPLISQLHHMSELASRLQAMRFRRGSLDFDLPEPEIVLDLQGRPDQI 432 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 + +R AH+LIEE M+ AN + A+F+ P L+RIH+ P E + +F++ LA L + Sbjct: 433 LRAERTVAHRLIEEFMLAANEAVAKFLSDRNIPLLYRIHESPEVEKLFAFQTFLAHLNIG 492 Query: 508 L-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 L + P +LE+V DRP+ M+ LLRSMKQA Y +N GHFGLA Y HF Sbjct: 493 LVVTDDSVSPTVLQGVLETVRDRPEERMVNQFLLRSMKQARYSSDNLGHFGLASDCYCHF 552 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPDL +HR + L +T++ ++EE LG S ERRA EA Sbjct: 553 TSPIRRYPDLVVHRILSRAL--------STSKRSSATVNLEE---LGDLTSQKERRAMEA 601 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 RD+ +C FM D+VG VF ++ V FG FV L D+F++GLVHV++L +DYY FD+ Sbjct: 602 ERDIVALRRCQFMADKVGQVFDACVADVQPFGIFVELKDVFVEGLVHVATLTDDYYEFDE 661 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 RL+G+ + +R+G+ V V++ VN++ R++DF L Sbjct: 662 ELHRLVGQRRRKIFRIGEVVTVQLVKVNLERRELDFEL 699 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 264/701 (37%), Positives = 416/701 (59%), Gaps = 18/701 (2%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP EL + L + EE +E + + +E +G++ T + Y +P RL+LV G + GH Sbjct: 21 KPLLFKELRMVLDVP-EEDIELFTQVMDELEEEGRVFKTHGKRYGVPSRLNLVTGRIQGH 79 Query: 93 RDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLA---QPLGADRKGRREARIVRVLVPK 148 GYGFL + +D+++ ++ + +H D+V+A + +DRK E I+R+L Sbjct: 80 ERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSSSDRK--MEGEIIRILKRA 137 Query: 149 TSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVG 208 + +VG + GFVVPD+ R+S DI + + GA+ G VVVE+ + P R A G Sbjct: 138 NTTLVGTFENSMSFGFVVPDNKRISGDIFVSKSEFHGAKKGQKVVVEILKYPEARRNAEG 197 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 +++E++GD TG+ + ++++ + +P+ V Q + + V EE GR DLR L + Sbjct: 198 RVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIGDTVTEEMIQGRRDLRGLRM 257 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 VTIDGEDA+D DDAV E G +RL V IADV+ YV ++PLD EA +RGTSVY + Sbjct: 258 VTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSPLDLEALDRGTSVYLVDR 317 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 VIPMLP LSNG+CSLNP VDRL + + G+ ++ +E+V++ R+TYT V+ Sbjct: 318 VIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNHEIFESVINIDERMTYTNVYK 377 Query: 389 IL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERI 447 IL + DQ+L ++Y+ +V +++ L +L K R +RG I F+ +EA+ + + + + + Sbjct: 378 ILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAIDFDFDEARVVIDEKGKPIDV 437 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 ++ + A+++IEE M+ N + A P ++RIH+ P E I + L LG Sbjct: 438 KRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHEDPDEEKIHNLNEFLYNLGYS 497 Query: 508 LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 + G NK PR +LLE V ++ T +LRS+++A Y E+ GHFGLA + Y HFT Sbjct: 498 IKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKARYSNESTGHFGLAAKYYCHFT 557 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEA 626 SPIRRYPDL +HR +K L +G +E H +E +L ++ + CS ER ADEA Sbjct: 558 SPIRRYPDLIIHRIMKLYL------KGGMSEEKINH--LEGILPEIAKQCSERERAADEA 609 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R+ D K ++M G +F+G+I++VT FG F+ LD+ I+GLV +SS+++DYY +++ Sbjct: 610 ERESEDLKKVEYMKAHEGEIFEGIIANVTSFGMFIELDNT-IEGLVRMSSMEDDYYNYNE 668 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 L+GE + + YR+GD V+V + ++ RKI+F L+ S Sbjct: 669 SHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFILVES 709 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 273/729 (37%), Positives = 418/729 (57%), Gaps = 29/729 (3%) Query: 13 KYANPIPSREFI-----LEHLTKRE--KPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 KY+N I E + L K +P +EL I+ E ++ LR ME + Sbjct: 10 KYSNSIMEEEIMGIKQTLASFMKEPAYRPMDIEELIAVFDIKKNE-YNAFKKTLRTMENE 68 Query: 66 GQLVFTRRQCYALP----ERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLSSEQMKTCI 119 G ++ T++ Y + E L+ G++ H G+GFL EG+KD +++ S + + Sbjct: 69 GLIIRTKKDKYMIANANHEEEGLIIGSLQSHSKGFGFLIPEEEGQKD-VFIPSNCINGAM 127 Query: 120 HGDQVLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 +GD++ + D K + RE +V ++ T++IVG Y GFVV +D R+S D+ I Sbjct: 128 NGDKISVRVTREDTKTKKREGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFI 187 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 GA G VV V++T+ P KA G + EVLG G+ + + ++ +P + Sbjct: 188 SKKDRNGANDGDVVTVKITKWPEENRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFS 247 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + V++ G+ +E+ EE GR DLRDL +VTIDGEDA+D DDAV EK G ++L V Sbjct: 248 EKVQKYAEGISDEIDEEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVH 307 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADV++YV+ ++PLD+EA R TSVY +V+PMLP LSNG+CSLNP+VDRL + C M Sbjct: 308 IADVTHYVKENSPLDKEALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFME 367 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVL 417 + KG++ ++ E+V+ ++ R+TY V IL+ D++L ++Y LV + + L +L Sbjct: 368 IDHKGKVVDHEIVESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGIL 427 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 R +RG I FE EAK N + I+ R ++++IEE M+ AN + A + Sbjct: 428 RNKRTKRGAIDFEIAEAKITLNELGKPIEIKPYDREISNRMIEEFMLAANETVAEHMFGT 487 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 P ++RIH+ P E + F+ + LG + + P+ + E+LE V + + ++ T Sbjct: 488 HLPFVYRIHESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVST 547 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK-YLLAKEQGHQGNT 596 +LLRSM QA Y PE GHFGLA + Y HFTSPIRRYPDL +HR IK YL + G + N Sbjct: 548 LLLRSMMQARYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINK 607 Query: 597 TET-GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + GY + S ER+A +A R+V D K ++M +++G F+G+ISSVT Sbjct: 608 LKNIVGY---------AAKQSSEMERKAQDAEREVDDLKKAEYMQERIGQEFEGIISSVT 658 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L + I+GLVH++ LD+DYY F++ L+GE + + Y+LGD+V+V V++ Sbjct: 659 SFGIFVELPNT-IEGLVHITDLDDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVNVDI 717 Query: 716 DERKIDFSL 724 R+I F + Sbjct: 718 TNREIFFKI 726 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 262/701 (37%), Positives = 408/701 (58%), Gaps = 18/701 (2%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP + +EL E I Q++ ++ L+ M RDGQ+V TR Y LPER++L GT+ GH Sbjct: 17 KPMTFEELKDEFKINKPRQVKRFKKILKKMTRDGQIVKTRYGYYGLPERMNLQIGTIQGH 76 Query: 93 RDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTS 150 GY FL + D++LS + + +H D+VL + + ++ E +VR++ S Sbjct: 77 PKGYAFLLPDKPGSPDVFLSPKSLNGALHNDKVLVRIHKEEMLNQKPEGEVVRIISRGMS 136 Query: 151 QIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP-TRRTKAVGK 209 ++VG + GFVVPDD R D+ I GA+ G VV ++T P T G+ Sbjct: 137 EVVGTFDKSDRFGFVVPDDDRFFRDVFINKADANGAKNGQKVVAQITGWPDTPAKNPEGE 196 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 I++V+G+ G+ ++ + + + +P V++Q+ + E+ + GR ++ LP V Sbjct: 197 IIKVIGNPSDPGVDIETIINKYGLSEDYPPKVKEQLEEVPNEISPKDYEGRELIQGLPTV 256 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TIDG DA+D DDAV EK G L V IADVSYYVR TPLD+EAR RGTSVY +V Sbjct: 257 TIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEARQRGTSVYLVDRV 316 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 +PMLP LSN +CSLNP V+RL M + ++ +G + Y+ +V+ S+ RLTY +V + Sbjct: 317 LPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIANYRLTPSVIKSNYRLTYEEVNEL 376 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQ 449 G +++ E+Y + L E+ + + L + R + G I FE +E + + + + E +E+ Sbjct: 377 FDGSKEIEEKYPDVAWMLFEMKTISEKLRERRFDEGAIDFEFDEPVVVLDDQGKPESVEK 436 Query: 450 TQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP 509 R A KLIEE M+LAN A P ++R+H++P E +++FR ++ G LP Sbjct: 437 RARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQPDDEKVSTFREFASKFGYYLP 496 Query: 510 GGNKPE-----PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 KPE P ++ ++LE D + + TM+LRSMKQA Y E+ GHFGL+ Q Y Sbjct: 497 ---KPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQARYAAESLGHFGLSFQYYT 553 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRYPDL +HR ++ ++ K+ + + ++ ++ S+ E+ A Sbjct: 554 HFTSPIRRYPDLVVHRIMREIITKKDLKEARQKKL------QSKLEEIAYQSSLREQEAT 607 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 EA R+ D+ ++M VG+ F G++SSVT FG F+ L +L ++GLVHVSS+ +DYY F Sbjct: 608 EAERESVDYKMAEYMEQFVGDDFPGIVSSVTSFGIFIELPNL-VEGLVHVSSMTDDYYYF 666 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 D+ L+GE + +TYR+GD V+V+V + ++ ++DF L+ Sbjct: 667 DEEKFALIGEQTRKTYRIGDEVKVKVVKTSKEDCQVDFELV 707 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 277/729 (37%), Positives = 411/729 (56%), Gaps = 16/729 (2%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P S D+L +L +G+ L L + M +DG LV TR LP + LV G + + Sbjct: 21 PVSYDDLGRDLRYKGK-GLGALWTEIELMIKDGLLVKTRFNTLGLPRAMGLVTGRLQVTQ 79 Query: 94 DGYGFL--RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQ 151 GYGF+ + + DL++ + + ++ D V+A+ GRRE +++R+L + Sbjct: 80 KGYGFVVPLEKTEEGDLFIPAMHLSGAMNEDLVIARVSDHGYGGRREGKVIRILERAHER 139 Query: 152 IVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 VG + GFV PD+ + DI + + AR G VVV++T P R KA G I Sbjct: 140 FVGTFTRSGDFGFVTPDNRHIGQDIYVRRKDFLNARNGDKVVVKITVWPNGRQKAEGTIT 199 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 E+LG G+ + ++ ++P +P+ V++ + + +P++ GR+D R P++T+ Sbjct: 200 EILGKKGDVGIDIISIIKDKDLPLDFPKEVKEAAQLVPQVIPKKDLKGRLDRRKWPIITV 259 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DG D++D DDA+Y EK RG + L V IADVS+YVRP LDREA RGTSVY +V+P Sbjct: 260 DGVDSKDLDDAIYAEK-RGEDYFLGVYIADVSHYVRPRGELDREAYARGTSVYLVDRVLP 318 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFYEAVMSSHARLTYTKVWHIL 390 MLP +LSNG+CSLN +RL M CEM +S K G++ Y +V++S R+ Y V IL Sbjct: 319 MLPPLLSNGICSLNEGEERLTMSCEMVISGKTGKVLSYDIAPSVIASRHRMNYPDVAKIL 378 Query: 391 QG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQ 449 D LRE+Y+ +V LE + L +L K R RG I FE E K I + ++R + Sbjct: 379 TDRDTALREKYSDIVPMLETMEELCTILHKKRVRRGAIEFEIPEVKVILDEKKRPIDVHL 438 Query: 450 TQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP 509 R A +IEE M+ AN + A + K P ++R+HD P + + S ++A+ G L Sbjct: 439 RHRTIAEMMIEEFMLAANETVAAHMTKHHYPFIYRVHDVPDEDRMQSLSKIMAQFGTVLK 498 Query: 510 GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 K P+ L V +P+ M+ T+ LRSMKQA+Y EN GHFGLA + Y HFTSP Sbjct: 499 IEGKMRPKVLQMALRKVKGKPEEGMISTLALRSMKQAVYQTENVGHFGLAAKDYTHFTSP 558 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR +K + G + + E + +++ + H S ER A EA R+ Sbjct: 559 IRRYPDLLVHRLLK---EQRTGQKLSKKEKENLN---DKLSLMASHASTRERLAIEAERE 612 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + ++ML VG F G IS VT FG FV+L++ I+GLVH+SSL +DYYR+D+ Sbjct: 613 TDELKMTEYMLPYVGQEFDGTISGVTSFGMFVQLEN-GIEGLVHISSLLDDYYRYDEEHF 671 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE---RAPRNVGKTAREKAKKGD 746 L+GE G++YRLG V ++V V+++ERKIDF L E A + + +++ K Sbjct: 672 ALVGEHGGKSYRLGSPVRIKVFHVSVEERKIDFILPEFETFVTARKETVPSDKKRTPKKQ 731 Query: 747 AGKKGGKRR 755 KKGG+ + Sbjct: 732 TVKKGGRNK 740 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 283/744 (38%), Positives = 405/744 (54%), Gaps = 36/744 (4%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD----DLYLSSEQ 114 L A+E +G ++ R Y LP R++LV G + G+GF+ + R++ D+++ Sbjct: 48 LDALEEEGVIIRNRSGLYGLPSRMNLVVGRLSMSPKGFGFIIPDARENEEETDVFVPGAA 107 Query: 115 MKTCIHGDQVLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS 173 + T +HGD+V+A+ ++ GR RE I+R+LV + IVG + GFV PD +++ Sbjct: 108 LATAMHGDRVVARVTPSESPGRAREGEIIRILVRANTHIVGTFERSKAFGFVTPDSTKIG 167 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 DI + GA+ G VVVE+T+ P R A G+++EVLG G+ V +R +++ Sbjct: 168 RDIFVLKKDFGGAKTGSKVVVEITKWPEARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDL 227 Query: 234 PYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 +P V A E E AGR D RD P+VTIDGED +D DD +Y +R G + Sbjct: 228 DENFPPDVAAAAAQCPENPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGIYA-YERDGEF 286 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 L V IADVS+YVR PLD EA RGTSVY +VIPMLP+ LSNG+CSLN VDRL M Sbjct: 287 FLGVYIADVSHYVRAGEPLDVEAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSM 346 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNL 413 CEM + + G + Y+ V+ RLTYT V +L G++ + LE L L Sbjct: 347 ACEMQIGADGEVKSYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRRL 406 Query: 414 YKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473 +VL R RG I FE E K +A +E+ + +IEECM+ AN + AR Sbjct: 407 REVLRGKRHRRGSIDFELPEIKVKLDAAGHPIALERRTGSIGESIIEECMLAANETVARH 466 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPD 531 +E +EP ++R+H+ P +E I F+S+LA LGL L K RD ++L+ V P+ Sbjct: 467 MELKEEPFVYRVHEAPVSEKIERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAPE 526 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 ++ + LRSM+QA Y + GHFGLA + Y HFTSPIRRYPDL +HR ++ A Sbjct: 527 ERIIGAVALRSMQQARYATASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFA---- 582 Query: 592 HQGNTTETGGYHYSMEEML-----QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 TG E L + +H S ER A EA R+ D K ++M VG Sbjct: 583 -------TGHIPAEKRERLRTVLSEAAEHSSARERIAVEAERETTDMKKIEYMAQFVGET 635 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F+GVIS VT FG FV L++ ++GLVHVS++ NDYY + + ++GE +G YRLGD V Sbjct: 636 FEGVISGVTAFGIFVELEN-GVEGLVHVSTMVNDYYSYVEEQYAMVGERTGARYRLGDAV 694 Query: 707 EVRVEAVNMDERKIDFSLISSE-RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEP 765 + + ++ R +DF L + P V +A+ KA + KRR KK Sbjct: 695 TIIITRADVQARTLDFVLKDNGVYDPDTVKASAKPKAPQEKPDASSEKRRPRKKK----- 749 Query: 766 DSAFRGEKKTKPKAAKKDARKAKK 789 G++K +P A A +A++ Sbjct: 750 -----GDRKHEPIIADTQASRAER 768 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 270/679 (39%), Positives = 384/679 (56%), Gaps = 27/679 (3%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFL----RVEGRKDDLYLSSEQ 114 L A+E DG ++ R Y LP R++LV G + G+GF+ R + D+++ Sbjct: 48 LAALETDGAVIRNRSGLYGLPSRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSA 107 Query: 115 MKTCIHGDQVLAQPLGADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS 173 M T +HGD+V+A+ +++ GR RE I+R+L + IVG + GFV PD +++ Sbjct: 108 MGTAMHGDRVVARVTPSEQPGRAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIG 167 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 D+ + GA+ G VVVE+T+ P +R A G++VEVLG G+ V +R +++ Sbjct: 168 RDVFVLKKDFGGAKTGSKVVVEITKWPEQRRSAEGRVVEVLGKTGDPGVDVLAVMRAYDL 227 Query: 234 PYIWPQAVEQQVAGL-KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 +P V + A K+ +PEE AGR D RD P+VTIDGED +D DD VY +K G Sbjct: 228 DEKFPPDVAEAAARCPKDPLPEE-YAGRRDRRDFPIVTIDGEDTKDIDDGVYAYEK-DGV 285 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 + L V IADVS+YVR PLDREA RGTSVY +VIPMLP+ LSNG+CSLN VDRL Sbjct: 286 FFLGVYIADVSHYVRAGEPLDREAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLS 345 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN 412 M CEM + G + Y+ V+ RLTYT V +L G++ + LE L Sbjct: 346 MACEMEIGMDGEVRNYEIVPCVIHVARRLTYTLVNKVLAGEEPFVSDNGDIRPMLETLRR 405 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 L +VL R RG I FE E K +A+ +E+ + +IEECM+ AN + AR Sbjct: 406 LREVLRAKRHRRGSIDFELPEVKVKLDADGHPVALEKRTGSIGESIIEECMLAANETVAR 465 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRP 530 +E +EP ++R+H+ P+ E I +S+LA LGL L K P D ++L+ V +P Sbjct: 466 HMELKEEPFVYRVHETPAAEKIERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQP 525 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 + ++ + LRSM+QA Y + GHFGLA + Y HFTSPIRRYPDL +HR ++ A Sbjct: 526 EERIIGAVALRSMQQARYSTASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFA--- 582 Query: 591 GHQGNTTETGGYHYSMEEML-----QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN 645 TG E L + +H S ER A EA R+ D K ++M VG Sbjct: 583 --------TGHIAAEKRERLRALLPEAAEHSSARERIAIEAERETTDMKKIEYMAQFVGE 634 Query: 646 VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR 705 ++GVIS VT FG FV L++ ++GLVHVS++ NDYY + + ++GE +G YRLGD Sbjct: 635 TYEGVISGVTAFGIFVELEN-GVEGLVHVSTMVNDYYSYIEDQYAMVGERTGTRYRLGDT 693 Query: 706 VEVRVEAVNMDERKIDFSL 724 V + + ++ R +DF L Sbjct: 694 VTIIITRADVQARTLDFVL 712 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 277/702 (39%), Positives = 396/702 (56%), Gaps = 12/702 (1%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 +P + +ELA + + + L +R LR ME +G + TR Y LPE+ +LV G + H Sbjct: 17 RPLTLNELA-RIFLPDGKGLGAFKRLLREMEEEGLIYQTRAARYGLPEQFNLVVGRLECH 75 Query: 93 RDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTS 150 GY FL V R+ D+++ + +H D+V + RE +VRVL Sbjct: 76 PRGYAFL-VPDREGEPDVFIPPGCLGGAMHQDRVAVRLFPGSHGRTREGEVVRVLRRAHR 134 Query: 151 QIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 Q+VG + + FVVPDD RL+ ++IP ++ GAR G VVVELT P T A G++ Sbjct: 135 QLVGTLYKKRRSVFVVPDDPRLTHQVVIPKGKLNGARNGEKVVVELTTYPGPYTPAEGRV 194 Query: 211 VEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVT 270 VEVLG GM + + R + +P +P VE++ + + E AGR DLR+ +VT Sbjct: 195 VEVLGPEDAPGMDMLVLCRRYGLPDGFPPEVEEEAENIPLTIRPEELAGRRDLREWLIVT 254 Query: 271 IDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVI 330 IDGEDA+D DDAV E G +RL V IADVSYYVR + LDREA RGTS+Y P +VI Sbjct: 255 IDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDREAFQRGTSIYLPDRVI 314 Query: 331 PMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL 390 PMLP LSNG+CSLNP+ DRL + M V SKG + Y+ + +V+ S ARLTY V L Sbjct: 315 PMLPPRLSNGICSLNPEEDRLTLSVLMRVDSKGEVLEYELFPSVIRSKARLTYRAVNDYL 374 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 G + L + LE + L L + R ++G I F E K + + E R + Sbjct: 375 AGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLPETKVVLDEEGRTVDVYPA 434 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +R ++IEE M+LAN + AR K + P ++RIH +P E + S +LA LG + Sbjct: 435 ERGIGEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQPDPEKVASLEELLASLGYQNTR 494 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 EP + E+LE+VA +P+ ++ ++LRS+KQA Y E HFGLA + Y HFTSPI Sbjct: 495 LGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARYAAERSEHFGLASEYYTHFTSPI 554 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ-LGQHCSMAERRADEATRD 629 RRYPDL +HR ++ + K G +E++ Q S ER A E R+ Sbjct: 555 RRYPDLFIHRVLRETVLKGAGLSPRR------RARLEKLAQEAAAQSSERERLAMEVERE 608 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 D K FM+D+VG + G IS VT +G +V L++ ++GLVHV L +D+Y +D+ Sbjct: 609 AVDIKKVAFMVDKVGREYAGFISGVTNWGLYVMLENT-VEGLVHVRHLTDDFYFYDEKNY 667 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 L+G +G+ +RLGD V VRV ++ E+ ++FSL++ AP Sbjct: 668 ALVGRHTGKRWRLGDPVRVRVLRASVPEKLVEFSLLTEAEAP 709 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 255/643 (39%), Positives = 381/643 (59%), Gaps = 12/643 (1%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 ++V GTVI + G+GFL VEG KD +Y+ +M HGD V A+ + KG++E RI+ Sbjct: 66 EVVTGTVIAYPGGFGFLEVEGGKD-IYIPPFEMVKVFHGDVVKAKV--TEFKGKKEVRII 122 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 +VL IV + E +VVP D IL+ + G VVV+++TQ PT+ Sbjct: 123 KVLKRAKKDIVAKVVFEDEQCYVVPLDENAHHRILLSKKDCQKLKEGEVVVLKITQFPTK 182 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 ++ A GK++EVLG+ +A+D+ +R + +P +P+ V ++V + EE+PEE R D Sbjct: 183 KSPARGKVIEVLGNPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRRD 242 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 LR+ TID E A DFDDAV E G ++L+V IADVSYYVR T D+EA RG + Sbjct: 243 LREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGFT 302 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 YFP + + MLPE LS LCSL P D+L EM G L Y YE+V+ S ARLT Sbjct: 303 YYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKARLT 362 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y + ++ GD L +++ LV+ L + LY++L + R E G I F+ EA+ I + Sbjct: 363 YNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDEYG 422 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I +R+ AH++IE MI AN + A +E A P L+R+H+ P E + + +L Sbjct: 423 EPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEILE 482 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 LG ++ ++ P+ + +++E RP+ +++ + LR+M +A Y P N GHFGLAL+ Sbjct: 483 GLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLALEH 542 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 YAHFTSPIRRYPD+ +HR +K L +G + + +T Y +EE G H S ER Sbjct: 543 YAHFTSPIRRYPDIIVHRLLKKAL---RGEEIDYEKTLAY---LEEA---GNHLSKQERI 593 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 ADEA + D+LK +M ++G F G+I+ V FGFFV L++ ++GLV +++L +D Y Sbjct: 594 ADEAEMEAIDYLKARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINTLTDDEY 653 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 FD+ RL+G +G+ +RLGD V+VR AV+ + +++F LI Sbjct: 654 VFDEPAHRLVGVRTGKVFRLGDHVKVRCIAVDEERARVEFELI 696 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 303/849 (35%), Positives = 440/849 (51%), Gaps = 120/849 (14%) Query: 66 GQLVFTRRQCYALPE----RLDLVKGTVIGHRDGYGFLRVEGR--KDDLYLSSEQMKTCI 119 G+LV ++ +AL + R +LV G + HRDGYGF+R R D+++ ++ T + Sbjct: 49 GRLVKVDKEHWALAQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAM 108 Query: 120 HGDQVLAQPLGADRKG--RREARIVRVLVPKTSQIVGRYFTEAGVG-------------- 163 GDQVL + + R G R RIVRVL + +VG++ G Sbjct: 109 QGDQVLVE-VFPKRPGEDRMAGRIVRVLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGP 167 Query: 164 -----FVVPDDSRLSFDILIP------------PDQIMGARM--------GFVVVVELTQ 198 +VVP D R++ ++IP P +++G + G VV VE+T+ Sbjct: 168 QYPGHYVVPFDERMTQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITE 227 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV---EQQVAGLKEEVPEE 255 PT A G+++EVLG+ G+ V++ +R H +P+++P+ V ++VA L EV Sbjct: 228 WPTPTRPARGRVIEVLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVAHLDGEV--- 284 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 A R D RDLP+VTIDGE ARDFDDAV + G W L V IADV+ YV P + LD E Sbjct: 285 -VAARRDFRDLPIVTIDGETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLE 343 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 AR RGTSVYFP + IPMLP+ LS +CSL P DRL + C M + + G++TGY+ E V+ Sbjct: 344 ARLRGTSVYFPDRAIPMLPQELSTDICSLRPGEDRLVLSCLMQMDAHGQVTGYEVTEGVI 403 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S R+TYT+V IL GD + R+ + PLV E ++ L ++L+ RE RG I F+ E Sbjct: 404 RSAQRMTYTQVQAILDGDAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPV 463 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 F+ ++ + + +R A++LIEE M+ AN A ++E PA++RIH+KP + Sbjct: 464 IEFDEFGAMKAVTRAERLWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVV 523 Query: 496 SFRSVLAELGLELPGGNKP-----------------------------------EPRDYA 520 F + A G L GN P P+ Y Sbjct: 524 EFEEIAASFGYSLGIGNLPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQ 583 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 +L +A +P+ ++ ++LRS+KQA Y +N GHF LA +Y HFTSPIRRYPDL +HR Sbjct: 584 KLTAKLAGKPEERIVAYLMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHR 643 Query: 581 AIKYLL-AKEQGHQGNTTETGGYH---------------YSMEEMLQLGQHCSMAERRAD 624 K LL A GH H + E+ + Q S ERRA Sbjct: 644 IAKALLEAGVDGHGVVAMGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAA 703 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS---LDNDY 681 EA R++ +W K FM D+VG F G+I S T +G FV L+DLFI+GLV + S LD D Sbjct: 704 EAERELVEWKKIKFMRDRVGEDFDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDR 763 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 Y + + + ++G+ G+T+R+G RV V ++ V+ E+++ FS++ E TA K Sbjct: 764 YSYRENTREIIGDGHGRTFRIGQRVRVLLDRVDAMEKRLQFSILLDEEE-----ATAARK 818 Query: 742 AKKGDAG--KKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAA 799 + AG K G + KK + S + E+ + KK RK K+ SA A Sbjct: 819 PRGKSAGKSKSAGHSKTGAKKTHAAAASERKAERPARTANPKKSGRKKKRFSAD----AV 874 Query: 800 ATKAKRAAK 808 AKR A+ Sbjct: 875 PDFAKRVAQ 883 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 401/713 (56%), Gaps = 19/713 (2%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIG 91 ++ S ++L ELH G L + L MER + + L + V+G+ G Sbjct: 19 DRTYSVEQLTDELHFTGATAFTFLVKELANMERKKLVSTDDHDHFKLVQETKTVEGSFHG 78 Query: 92 HRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR---EARIVRVLVPK 148 + G+GF+R + D+Y++ + + I GD V + + R G E +IV ++ Sbjct: 79 NDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPGSDRGPEGKIVSIVKRN 138 Query: 149 TSQIVGRYFTEAG----VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR- 203 +QIVG Y +G V D +LS L+ DQ + G V++ E+ P + Sbjct: 139 YTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHPTEGEVIIAEVAAYPDAQH 198 Query: 204 -TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 T+ +G +V+G GM V + H++P ++P+ V + + + V +E K GRVD Sbjct: 199 PTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDEANRIPDYVTDEEKVGRVD 258 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 + D PLVTIDG +++D DDAV + G + L V IADVS+YV ++ LDREA RGTS Sbjct: 259 ITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSHYVTENSELDREAFKRGTS 318 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +VIPMLP LSNG+CSLNP V+RL M CEM + G + +K +++V+ SHAR+T Sbjct: 319 VYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGEIVNHKIFQSVIRSHARMT 378 Query: 383 YTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 Y V IL+ D RE+YA LV + + +L+++L K R RG I F+ EAK I + Sbjct: 379 YDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRRHRGAIDFDDNEAKIIVDEA 438 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 I+ R A ++IE M+ AN + A+ + K P ++R+H+ P ++ + SF + Sbjct: 439 GHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFIYRVHETPDSDRMLSFFEFV 498 Query: 502 AELGLELPGGNKP-EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 G+ + G +K +P+ ++L+ VA +P+ M+ M+LRSMKQA Y ++ GHFGLA Sbjct: 499 TNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLRSMKQARYADQSLGHFGLAA 558 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 Y HFTSPIRRYPD+ +HR I++ + T E Y + + + + S E Sbjct: 559 PYYTHFTSPIRRYPDMMVHRLIRHYA------ENGTGEEARARYR-DNLPNIAETTSDHE 611 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 RR + RDV K ++M D VG F+ V+ SV FG FV L++ ++GLVH+S++D+D Sbjct: 612 RRGIDTERDVDSMKKAEYMADHVGETFEAVVDSVMKFGLFVELENT-VEGLVHISTMDDD 670 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 YY + + L+G + +T+R+G V+V++ V+ D+R++DF L++ E AP+ Sbjct: 671 YYEYVEKQLALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFKLLNPEEAPKT 723 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 291/759 (38%), Positives = 423/759 (55%), Gaps = 44/759 (5%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE IL + R +P + EL V L IE E L L ++E++G +V TR+ Y LP Sbjct: 3 REEILTLMRARSYRPLTASELMVALGIEDEGAFMEL---LHSLEQEGYIVRTRKDKYGLP 59 Query: 80 ERLDLVKGTVIGHRDGYGFL-RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 E++ LV G + GY F+ ++ ++DLY+ + + +HGD VLA+ L R+E Sbjct: 60 EKMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMHGDLVLARVLPGTTGRRQE 119 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 I+RVL ++VG + + FV+PDD+RL DI+IP + AR VVVE+T+ Sbjct: 120 GEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPAGASLEARDRDKVVVEITR 179 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P R G++++VLG G+ V ++ + + +P V ++ EE+P + + Sbjct: 180 WPEARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREA----EEIPRDLEP 235 Query: 259 G----RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 G R DLRD LVTIDG DARD DDAV E++ G + L V IADVS+YVR PLDR Sbjct: 236 GELAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGRPLDR 295 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA NRGTSVYF +VIPMLP LSN +CSLN DRL + MT+S G + Y+ + +V Sbjct: 296 EAFNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKDYELFPSV 355 Query: 375 MSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 + R+TY V IL+ D +L E+Y LV + + L +L + R RG I F+ E Sbjct: 356 IRVRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAIDFDFPE 415 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 AK + + I R A +IEE MI+AN AR + + PA++R+H++P+ + Sbjct: 416 AKVKLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEEPAPDK 475 Query: 494 ITSFRSVLAELGLELPGG--NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + + + LA GL + + PR + E+L +V RP+ ++ T++LRSM A Y + Sbjct: 476 LEALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHARYAGD 535 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GHFGLA Y HFTSPIRRYPDL +HR ++ T G +S E M Q Sbjct: 536 CLGHFGLASPYYCHFTSPIRRYPDLVVHRILR-----------ETWSPAG--FSAERMAQ 582 Query: 612 LGQHCSMA-------ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 L ++A E+ A+EA R+ D K +M VG F GVIS V +GFFV L+ Sbjct: 583 LSAFVALAAVQASEREKLAEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVELE 642 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + ++GLVHVS+L +DYY + + L+GE +G++YR+G V V V V++D R++DF L Sbjct: 643 NT-VEGLVHVSTLTDDYYHYQEDQLALVGEHTGKSYRIGQPVTVLVTRVSVDARQVDFEL 701 Query: 725 ISSERAPRN-VGKTARE------KAKKGDAGKKGGKRRQ 756 + E VG + KA++ +AG GGK R+ Sbjct: 702 VKPEEEKTGPVGGAGAKVKGHPVKAREREAGPSGGKARK 740 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/685 (37%), Positives = 389/685 (56%), Gaps = 21/685 (3%) Query: 46 IEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL-DLVKGTVIGHRDGYGFLRVEGR 104 I G + LE R + + R+G L +R Y ++ + +G G+R YGF+ + Sbjct: 5 IRGGKDLEMFIRSAKMLAREGVLTSSRPDVYRYEDQQHEEYEGIYKGYRKSYGFV-IMLD 63 Query: 105 KDDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREARIVRVLVPKTSQIVGRYFTEAGVG 163 +D+Y++ + T +H D+V + + +D K +RE IV V+ IVG Y + G Sbjct: 64 DEDIYVAEQNKGTAMHNDKVRVRIVPSDYTKHKREGIIVDVIERANETIVGTYDRQQHFG 123 Query: 164 FVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMA 223 FVVPDD R+ D+ + + AR G V+V++T+ P K G I E+LG G+ Sbjct: 124 FVVPDDERIGTDVFVDLKNTLDARSGAKVLVKITKWPEGNKKPEGIITEILGYKGDVGLD 183 Query: 224 VDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAV 283 ++ + H+IP+ +P+ V + + V E+ K R DLRDL +VTIDGEDA+D DDAV Sbjct: 184 INCIMANHKIPFAFPKEVIEASEKIDTIVHEDPK--RWDLRDLQMVTIDGEDAKDLDDAV 241 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 K G + L V IADVS+YV P+D EA RGTSVY +V+PMLPEVLSNG+CS Sbjct: 242 SGRKLPNGNYELGVHIADVSHYVTSGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGICS 301 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 LN DR M C M + G + Y+ +++ R +Y +V+ L+ + + + Sbjct: 302 LNAHEDRYAMTCMMEIDDSGTVVNYRIRPSIIHVGRRCSYKEVYKALE-ENIIPDDLVDF 360 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 + L +L + K+L++ R RG + F+ E K + + + RI + R A +LIEECM Sbjct: 361 IPMLRDLAEISKILNRMRRRRGALDFDFPEYKVLLDLDGTPLRIVKRDRTMAERLIEECM 420 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAEL 522 ++AN + A + + +++RIH+ PS E + F+ VL LG L + PRD+ ++ Sbjct: 421 LIANETVATHLRDTERTSVYRIHENPSEEKLDLFQKVLNYLGQNLVISADGVTPRDFQKI 480 Query: 523 LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 L+ V + ++ Q M LRSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR + Sbjct: 481 LDVVKGQDIEQVAQIMTLRSMQQAKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRLL 540 Query: 583 KYLLAKEQGHQGNTTETGGYHY-SMEEMLQLG--QHCSMAERRADEATRDVADWLKCDFM 639 K + GGY ++E G +H S+ E+ A EA R+ D K +M Sbjct: 541 K----------ADMHWKGGYSKRDVDEAFLAGAVEHSSIQEQVATEAERETTDLKKTQYM 590 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 + VG VF+G I+S+T FG FV L++ IDGLVH+S +++DYY FD+ L+G+ +G+T Sbjct: 591 VPFVGEVFEGTIASITSFGMFVELEN-GIDGLVHISMMNDDYYFFDEEHFVLVGKRTGKT 649 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSL 724 Y LG++V V + ++++++IDF L Sbjct: 650 YHLGEKVTVTLVKADVEKKQIDFVL 674 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust. Identities = 255/695 (36%), Positives = 396/695 (56%), Gaps = 17/695 (2%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P E+A+ L I E++ E L+ L ++ +G++ ++R Y+ + + GT + Sbjct: 69 PMKIKEIAMVLQITKEQRKE-LQEVLDSLVEEGKISLSKRGKYS-KGQAKRIMGTFQANI 126 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIV 153 G+GF+ VEG+++D+++ +E + GD+V G+ R+E +IV ++ + +++V Sbjct: 127 RGFGFVMVEGQEEDIFIPAENVNGAFQGDEVECIITGSPSGRRQEGKIVGIISHQVTKVV 186 Query: 154 GRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEV 213 G Y GFV PD+ R DI IP + + A G VVVELT K GKI+E+ Sbjct: 187 GLYEKSKSFGFVRPDNQRFLKDIYIPAGKELHAMTGHKVVVELTSYGGEHMKPEGKIIEI 246 Query: 214 LGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDG 273 LG G + ++ +IP +P+ V Q + +EV E AGR+DLRD +VTIDG Sbjct: 247 LGHVNDPGTDILSIVKDFDIPTEFPEKVLNQAVRVGKEVSEADMAGRMDLRDWQMVTIDG 306 Query: 274 EDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPML 333 EDA+D DDAV G +RL V IADV+ YV+ + LD EA RGTSVY +VIPML Sbjct: 307 EDAKDLDDAVSVVMD-GENYRLGVHIADVTNYVQERSALDWEALKRGTSVYLADRVIPML 365 Query: 334 PEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD 393 P+ LSNG+CSLN +RL + C MTV+ +G + ++ E V+ R++Y V +L GD Sbjct: 366 PQTLSNGICSLNAGENRLTLSCIMTVTPEGEVVDHQIAETVICVDKRMSYNGVAKVLAGD 425 Query: 394 QDLRE---QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 + E ++ P++ ++EL + ++ + R +RG I F+ E K I + + R I+ Sbjct: 426 AEALEADREFVPMILRMKELSD---IIRERRAKRGSIDFDFPETKIILDEKGRPVEIKPY 482 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 RNDA K+IE+ M+LAN + A + P L+R HD P E I + + G L Sbjct: 483 DRNDATKIIEDFMLLANETVAEEYFWREIPFLYRTHDVPDEEKIRKLGTFINNFGYNLHV 542 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 N+ P++ +LL V P+ ++ + LRSMKQA Y EN GHFGLA + Y HFTSPI Sbjct: 543 RNEVRPKEIQKLLCKVEGTPEEPLISRLALRSMKQAKYTTENTGHFGLAAKYYTHFTSPI 602 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRYPDL +HR IK L +G T HY + + ++ CS ER A+E+ R+V Sbjct: 603 RRYPDLQIHRIIKENL------RGRLTGERMEHYR-KILTEVASQCSQRERTAEESEREV 655 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 K ++M +G ++GVIS VT +G +V L + I+GL+HV+ + +D+Y F + Sbjct: 656 VKLKKAEYMQAHIGGEYEGVISGVTKWGVYVELPNT-IEGLIHVADMRDDHYNFIEETYE 714 Query: 691 LMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++GE +G+T++LG +V++RV + +R ++F + Sbjct: 715 MVGEHTGKTWKLGQKVQIRVTDADRLQRTVNFEFV 749 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 276/701 (39%), Positives = 385/701 (54%), Gaps = 28/701 (3%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRL----RAMERDGQLVFTRRQCYALPERLDLVKGT 88 +P S +EL EL++ LRR+L ++ G + RR Y + L LV Sbjct: 18 QPFSINELLGELNLS-----RSLRRKLVQFLDSLVVAGLIKHMRRGRYRVNRPLKLVCAR 72 Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPK 148 + G+G L +LY+++ ++ + GD+V+A L R R E IV V+ Sbjct: 73 LKHQSSGHGVLTDCDDGHELYVATFRLGGAMDGDEVMALELPESRGRRPEGWIVEVVKRS 132 Query: 149 TSQIVGRYFTEAGVGFVV--PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++G + G VV + L+FD+ + + +G VVV+ + + P Sbjct: 133 RETLLGVCEKNSRQGGVVFRSEQGGLTFDV-DDRSRDVSLLVGQVVVLRIDRYPAMHENG 191 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHE--IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 +G IV+VLG + G+ VDI H IP + AVEQ + + EVP E A R DL Sbjct: 192 LGHIVDVLG-HAGSP-EVDILSTVHRLGIPNRFSAAVEQAASAIAAEVPPEVVAARADLC 249 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 LP VTIDG DARDFDDAV + G WRL VAIADV YYV + LD EAR RGTSVY Sbjct: 250 SLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIADVGYYVEEGSALDLEARERGTSVY 309 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FPS+ +PMLP+ LSNG+CSL P+ +RL +V E+T GR ++ Y A + S RL Y Sbjct: 310 FPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDDLGRRLNFEAYRATIRSRQRLIYE 369 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 +V +L G PL + L ++ +L + L R RG I F+ EA IF+ E RI Sbjct: 370 QVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGAIDFDLPEANVIFDDEGRI 429 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 RI + R D+H+LIEE M+ AN + A F+ +E +FRIH+ P ++ SF+ LA L Sbjct: 430 VRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIHESPDIRSMQSFQQFLATL 489 Query: 505 GLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSY 563 L + + R+ LL V + +LLRSMKQA YD EN GHFGLA +Y Sbjct: 490 NLGITLDEDGISARELRRLLHEVEGTSLEFSVNRILLRSMKQARYDAENSGHFGLASDAY 549 Query: 564 AHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRA 623 HFTSPIRRYPDL +HR + +L + + E + +L + AERRA Sbjct: 550 CHFTSPIRRYPDLLVHRLLLQILDGRADWEAD-----------EPLPRLADAATAAERRA 598 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 EA RD+ D KC FM D++G + G I+SV FGFFV LD+ F++GLVH+ +L +DYY Sbjct: 599 MEAERDIVDLRKCQFMEDKIGTRYSGYITSVNAFGFFVELDEFFVEGLVHIRTLSDDYYV 658 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 FD+ L+G++ +T+++GD VEV V + R+IDF L Sbjct: 659 FDEERLILVGQARRKTFQVGDTVEVEVWQIKSAAREIDFVL 699 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/719 (35%), Positives = 410/719 (57%), Gaps = 26/719 (3%) Query: 12 EKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFT 71 +K N + S ++I P + DEL+ L+IE +++ + + + +++D +++ Sbjct: 5 QKVLNIVNSNDYI---------PLTFDELSSRLNIEKKDK-KIFHKIINELQKDKKILLD 54 Query: 72 RRQCYALPERLDLVKGTVIGH-RDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 + GT+ G D F+ + DD++++ + + IH D+VL + Sbjct: 55 KNSNIIPITEQKAYPGTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVT-IT 113 Query: 131 ADRKGRR--EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 ++K R E +++++L +T ++VG + G GFV+ DD + FD+ + GA+ Sbjct: 114 VEKKPNRSPEGKVLQILSRETKKLVGTFDEAKGYGFVILDDKKYGFDVFVQSGNKNGAKN 173 Query: 189 GFVVVVELTQRPTRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 VVV+L + P++ K G IVEVLG G+ + +T ++PY +P+ V+QQ Sbjct: 174 NDKVVVKLIKTPSKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKE 233 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 +++ V E K R+D RDL V+IDG DA+DFDDA+ KK G + L+V IADVS+YV+ Sbjct: 234 IEQHVDESEKKSRMDFRDLLTVSIDGSDAKDFDDAISITKK-GENFVLYVHIADVSHYVK 292 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 +T LD+EA RGTSVY +VIPMLP LSNG+CSLNP DRLC+ +M +S G+ Sbjct: 293 KNTALDKEAFRRGTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLD 352 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 YKFYE+V++S RL Y V L+ D D + L +L + LY++L R++RG I Sbjct: 353 YKFYESVINSDYRLIYKNVSDFLE-DIDNPYEDEKLTDNLLLMKELYEILSARRKKRGSI 411 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 F+ E K I + ++ + + +R +KLIEE M++ N + A P L+R+H+ Sbjct: 412 DFDFPETKIILDENSKVIDVTKDERRIGNKLIEEFMLITNETVASHFGYLDRPFLYRVHE 471 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 +P E + +F+ +L+ G L G N +DY +L + +P+ +L ++LLRSM++A Sbjct: 472 EPDEEKVNTFKRILSNFGYHLKGKN-LYSKDYQRILNELDGKPEKPLLASLLLRSMQKAE 530 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y HFGLA Y HFTSPIRRYPDL +HR +K + H+ +T + M+ Sbjct: 531 YSENPSIHFGLASMFYTHFTSPIRRYPDLFIHRIVKNFI----NHKPDTNNEKEF---MK 583 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + + + CS ERRA+EA R+ D ++M + F+G+ISS+T FG FV+LD+ Sbjct: 584 YIKDIAKQCSATERRAEEAEREAIDMKSAEYMQQHIDEEFEGIISSLTKFGIFVQLDNT- 642 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 I+GLV S+ +DYY FD+ + GE + ++Y +G +V V+V + D+R+IDF ++ Sbjct: 643 IEGLVQFQSMIDDYYVFDEKNYTVYGERTKKSYHIGQKVRVKVINSDKDKRQIDFEFVN 701 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/714 (37%), Positives = 409/714 (57%), Gaps = 16/714 (2%) Query: 20 SREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 +R+ IL+ + K KP S EL I+ ++ + + +E++G++V TR + L Sbjct: 3 NRDSILDCMHKESYKPLSYHELKAVFGIKDVDEDIKFSKIVGKLEKEGEIVKTRAGKFGL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 PE ++LVKG + + G+G L + ++++ +++ +H D+V+ + G+R Sbjct: 63 PEMMNLVKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMHNDRVMVRIQEKGYNGQR 122 Query: 138 -EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E ++R+L T ++VG + + VVPDDSR + I + + A+ G V+V + Sbjct: 123 PEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASRKWKAKEGDKVLVRI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + P R A GKIVEVLG G+ + + + H + +P V ++ + EV E Sbjct: 183 SSWPERDKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVMEEARNVAVEVNAEE 242 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 + R DLR+ +VTIDGEDA+D DDAV EK G++L V IADVS+YV+ LDREA Sbjct: 243 ISRRRDLREWRMVTIDGEDAKDLDDAVSIEKT-SKGYKLGVHIADVSHYVKEDCKLDREA 301 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTSVY +V+PMLP LSN +CSLNPQV+RL + C M + S G++ Y+ ++V+ Sbjct: 302 FKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDIDSWGQVVDYEIVKSVIQ 361 Query: 377 SHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 + R+TY+ V IL + L+E+Y LV+ + L +L ++R RG + F+ E+K Sbjct: 362 INERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRRSRLNRGMLDFDFPESK 421 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I + E +++ +R LIE+ MI AN A + P L+R+H+KP EAI+ Sbjct: 422 VIVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHLHNLGLPVLYRVHEKPDEEAIS 481 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 VLA G ++ G+K P + +L + +P+ +M+ M+LRSMK A Y PE RGH Sbjct: 482 ELNKVLAVFGHKIK-GHKVSPMLFQGILADIKGQPEEQMISLMILRSMKHASYLPEPRGH 540 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL-GQ 614 FGLA Y HFTSPIRRYPDL +HR + LL G TT S+E+ + + G+ Sbjct: 541 FGLASPYYCHFTSPIRRYPDLIVHRVLSSLL-----DGGMTTRKKS---SLEKKMTIYGE 592 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S+ E +A+EA R++ D K +M VG+ F ISSV FGFFV L++ ++GLVH+ Sbjct: 593 QSSLQEMKAEEAERELLDVKKAQYMSQFVGDEFSARISSVQAFGFFVALENT-VEGLVHI 651 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 SS+ +DYY F L G SG+ + +GD+V V++ V++DE KIDF L+ E Sbjct: 652 SSIADDYYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDVDEGKIDFELLQDE 705 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/644 (38%), Positives = 379/644 (58%), Gaps = 11/644 (1%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRV 144 +GT IGH G+GF+ +EG+ +D+++ T +H D+V ++G+R E +V+V Sbjct: 111 EGTFIGHPKGFGFVEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDKKEGKRQEGVVVKV 170 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 L +IVG Y GFV+ D+ + S DI IP + G + G V+V +T + Sbjct: 171 LERGMPEIVGTYQLNRDFGFVISDNPKFSKDIFIPRKEAAGIKNGDKVIVVITDYGSGNK 230 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 GKI E LG+ G + +++ IP +P+ V +Q + + V + + GR+DLR Sbjct: 231 NPEGKIKENLGNIRTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDADRDGRLDLR 290 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 L VTIDGEDA+D DDA+ K+ G + L V IADVS YV+ ++ LDREA RGTSVY Sbjct: 291 HLQTVTIDGEDAKDLDDAISLTKE-GDIYHLGVHIADVSNYVQYNSALDREALKRGTSVY 349 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 +V+PMLPE LSNG+CSLN DRL + C M ++ KG++ ++ E V++ + R+ YT Sbjct: 350 LADRVVPMLPERLSNGICSLNQGEDRLALSCLMDINEKGKVVSHQIAETVINVNERMCYT 409 Query: 385 KVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 V +IL+ D++ +++Y L+ + L +L +R RG I F+ E+K I NA + Sbjct: 410 DVKNILEDTDEEAKKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDFPESKIILNAAGK 469 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 ++ + N A K+IE+ M++AN + A+ + P ++R HD P E + S ++L Sbjct: 470 AIDVKPYEANVATKIIEDFMLMANETVAQEYCTEEIPFVYRTHDNPDPEKVESLLTLLHN 529 Query: 504 LGLELPGGNKP-EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 G+++ + P++ +++ES+ P+ M+ ++LRSMKQA Y E GHFGLA + Sbjct: 530 QGVKIQKAKEEITPKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYTTECSGHFGLAAKY 589 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPDL +HR IK L +G T HY+ E + ++ + S+ ERR Sbjct: 590 YCHFTSPIRRYPDLQIHRIIKDNLRGRLMREGRTE-----HYA-EILDEVARQSSVCERR 643 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 ADEA R+ K ++M +G F+G+IS VTG+G +V L + ++GLVHV++L +DYY Sbjct: 644 ADEAERESDKLKKAEYMSYHLGEEFEGIISGVTGWGLYVELPNT-VEGLVHVNTLRDDYY 702 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 FDQ L GE + + Y+LGD+V VRV + + +DF L++ Sbjct: 703 IFDQETYELRGEMTKKVYKLGDKVCVRVADADKMLKTVDFELVA 746 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/697 (36%), Positives = 375/697 (53%), Gaps = 70/697 (10%) Query: 83 DLVKGTVIGHRDGYGFL-------RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 + V G + HRDGYGFL RV G D+++ + +HGD+VL + + G Sbjct: 66 EFVVGRLNLHRDGYGFLIADRQIPRVVG---DIFIPPDSASQAMHGDRVLVRIARIEPDG 122 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM---GARM---- 188 R + IV+VL + +VG + +VVP D RL + IP GA + Sbjct: 123 RADGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIG 182 Query: 189 -------------GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 G +V VE+ + R VG++VE+LG G+ V+I +R H +P+ Sbjct: 183 VTAPKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVDVEIVIRKHHLPH 242 Query: 236 IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295 +P V +Q + +P GR D R + +VTIDGE ARDFDDAV+ +K G + L Sbjct: 243 QFPPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVL 302 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 V IADVS+YVRP TP+DREA RGTSVYFP + +PMLP LS LCSL P DRL + Sbjct: 303 HVHIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSA 362 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYK 415 M + +G + +F E V+ S AR+TYT V +L+GDQ LRE+Y PLV E + L Sbjct: 363 LMEIDHRGEVVRQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELAL 422 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 VL++ R RG I F+ E F+ + + + RN A++LIEE M+ AN S A +E Sbjct: 423 VLNRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHLE 482 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG------------------------ 511 A +++RIH+KP + + F V A G+ L G Sbjct: 483 NAGIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAIV 542 Query: 512 ----NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 R Y +L+ + +P+ +L ++LRS++QA Y EN GHF LA +Y HFT Sbjct: 543 LADNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHFT 602 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEAT 627 SPIRRYPDL +HR ++ +L G T E+ + CS +ERRA +A Sbjct: 603 SPIRRYPDLIVHRLLRAVLL------GKPTP------DESELGPIADDCSQSERRAADAE 650 Query: 628 RDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQV 687 R++ +W K FM D+VG F ++ S T +G FV L +LFI+GLV + +L +D Y + + Sbjct: 651 RELVEWKKVKFMADRVGEDFDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQEN 710 Query: 688 GQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 ++++G+ + + + +GD++ V ++ ++ ++RK+ FS+ Sbjct: 711 VRKVVGKRTRRQFSIGDKLRVVLDRIDANDRKLQFSI 747 >UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteobacteria RepID=RNR_THIFE Length = 439 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 219/429 (51%), Positives = 285/429 (66%), Gaps = 4/429 (0%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP ERE EKY PI SRE+IL +L +P + +++ EL + ++Q E LRRRLRAM Sbjct: 13 RDPMFEREKEKYERPIVSREYILSYLEGTGRPLTLEDIIAELEVAEDDQ-EALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + ++LV+GTV H DG+GFL E DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVAAMELVRGTVSAHPDGFGFLIPEAGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL--SFDILIPP 180 +L + +G DR+GR E +VR+L IVGRY+ + GV +VVP+D R+ F ++ Sbjct: 132 TILGRAVGEDRRGRIEGAVVRILERALKHIVGRYYADNGVHYVVPEDRRIPQEFAVVEGE 191 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + + G +V++E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP Sbjct: 192 GEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVRNYGLPHQWPDE 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ E VPE KAGR DLRDLPLVTIDG DA+DFDDAVY E G +RL VAIA Sbjct: 252 VLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIENG-FRLTVAIA 310 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV+ YV P + LDREA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM CEM + Sbjct: 311 DVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFCEMEMD 370 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + GR TG++F ++ S R TY +V IL GD +LR Q A +V HLE LH+LY+ KA Sbjct: 371 AAGRSTGFRFDRGIIGSQRRFTYDEVAAILAGDAELRAQDAAMVPHLEALHSLYESFAKA 430 Query: 421 REERGGISF 429 RE RG I F Sbjct: 431 RERRGTIEF 439 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/748 (34%), Positives = 403/748 (53%), Gaps = 21/748 (2%) Query: 16 NPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQC 75 +P+ E IL L + + R + VE + +++ + R L + + Q++ + Sbjct: 9 HPLTPEERILAFLREEAQKPVRSDRLVEAVLRKKKERSDVSRALDRLVAEKQVILLKGGY 68 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 LP++L +G + H DGYGF+ EG ++DLY+ K +H D+VL+ LG D +G Sbjct: 69 AGLPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHLGTDHRG 128 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 R E ++V ++ S +VG G F+ P D ++ + L+ + + G + V++ Sbjct: 129 RSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVDNGAEKLQEGELAVLD 188 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + + P GKI LGD + D+ + TH + +P VE + + +EV E Sbjct: 189 ILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKRMAKEVAVE 248 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 RVDLR L ++TIDG+ ARDFDDA+ + G +++ + IADV YV P + LD+E Sbjct: 249 PSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDKE 308 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTSVYFP +V+PM PEVLSNG+ SLNP DRL + +S G++ + +V+ Sbjct: 309 AFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVI 368 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER---GGISFESE 432 S R TY++V IL G+ +P K +L +L+K+ REER G + F+ Sbjct: 369 RSRLRATYSRVHPILAGES----TDSPESKFSVQLRSLWKLAKNLREERFQNGSLDFDLP 424 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E + + + I ++ R +H L+EE M+LAN A + + A++R+H+ PS E Sbjct: 425 EPEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPE 484 Query: 493 AITSFRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 S L LG+ +P K + D + +LES P +M+ +LRS+KQA YD Sbjct: 485 KTESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDV 544 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 GHFGLA+ Y HFTSPIRRYPDL +HR + + G G Y +E Sbjct: 545 YPLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGE--------GSFYPLE--- 593 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 Q+ S ER + EA R D K FM +G F G +S VTGFGFFV L D+ ++G Sbjct: 594 QVAVQASERERASVEAERMAVDLKKIRFMGQHIGKKFSGSVSGVTGFGFFVELSDVLVEG 653 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 LV S+L++DYY +D+ L GE++ +TYR+GDR+EV V V+ + +I+F+L E Sbjct: 654 LVPFSALNDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFAL-DQEGR 712 Query: 731 PRNVGKTAREKAKKGDAGKKGGKRRQVG 758 P ++ K +++ K + ++ GK R+ G Sbjct: 713 PESLQKVRKKRKGKKNRSQRAGKSRKKG 740 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 269/723 (37%), Positives = 391/723 (54%), Gaps = 15/723 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E +LE++ E +P++ EL L + R L ME G LV T+ YALP Sbjct: 3 KERLLEYMRSEEYRPSTVQELCERLGVTSAADFRAFVRLLNEMEDAGDLVRTKNNRYALP 62 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLA---QPLGADRKG 135 E+++ + G + GYGF+ E + D+Y+ + + GD+VL + G + Sbjct: 63 EQMNFIAGRLQLKARGYGFVIPENEAEADIYILQTALNGAMSGDRVLVRLREERGKGAQA 122 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 RE IV++L +IVG+ A FV P D R D+ +P D + A G VVVVE Sbjct: 123 HREGEIVKILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVFVPKDAVGNAHDGQVVVVE 182 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 LT PT VG++VEVLG G+ + +R + +P +P+ V + E+ Sbjct: 183 LTSYPTATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLPEAFPEDVLADAERIPLEIDPA 242 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 A R D R +VTIDG+DA+D DDAV+ ++ G + L V IADV YYV+ ++PLD+E Sbjct: 243 EIARRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYELGVHIADVGYYVKENSPLDKE 302 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTSVY +VIPMLP LSN +CSLNP+VDRL M C M + +GR+ ++ +V+ Sbjct: 303 AFRRGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMSCVMEIDGQGRVVSHEIVPSVI 362 Query: 376 SSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + R+TY V IL+ D++LR +YAPLV E + L +L R RG I F+ +E Sbjct: 363 RTAERMTYNDVRKILEDEDEELRARYAPLVPMFERMRELALILRDKRMRRGAIDFDFDEI 422 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K N IE R+ A ++IEE M+ AN + A P ++R+HD+P + I Sbjct: 423 KVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAEHFHWLGVPFIYRVHDEPDPDKI 482 Query: 495 TSFRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 L G + G G K PR E+L V + +A M+ ++LRSM+QA Y PE Sbjct: 483 IHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKREARMISMVMLRSMQQAKYRPEC 542 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR I+ +L + G+ + H E + + Sbjct: 543 TGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLTR-----GSLSPQREAHLR-EFVAEA 596 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 + S ER A EA R+V ++M + F G+IS V FG FV+LD+ ++GL+ Sbjct: 597 SRQSSERERIAQEAEREVDQLKMVEYMQAHIDEEFDGIISGVVPFGLFVQLDN-GVEGLI 655 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 H+S L +DYY + L+GE + + +R+GD V V V ++ +IDF L+ R Sbjct: 656 HISELSDDYYVLHERQMALIGERTRRVFRIGDPVRVVVIRAVKEDLRIDFGLVEHLREAT 715 Query: 733 NVG 735 VG Sbjct: 716 YVG 718 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/716 (35%), Positives = 403/716 (56%), Gaps = 23/716 (3%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD-LVKGTVIG 91 +P S +L L + E+ + + + + +VF+++ +P R+ +G + Sbjct: 20 RPLSLAQLQETLGLSTTEEFVAMNKAVNELAEQYVIVFSQKGNL-MPARMGGYYQGALSV 78 Query: 92 HRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQ 151 +R G+GFL +E ++ ++++ + ++GD + + L + G E ++RVL KT+ Sbjct: 79 NRKGFGFLDLED-ENSIHITEANLHGAMNGDVAIVKKLPS-FYGSDEGEVIRVLQHKTNT 136 Query: 152 IVGRYFTEAGVGFVV-PDDSRLSFDILIPPDQIMGARMGFVVVVELTQR--PTRRTKAVG 208 +VG +FT G G + DD R+ +++ Q G V++++ + P Sbjct: 137 LVGTFFTSVGKGLQLRLDDERIKSRLIVKNWQAFKMVSGTKVLLKVLRYGDPMEL----- 191 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 +IV++LG G+ + L ++I +P+ V +Q V + K GR D + Sbjct: 192 EIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPKEKEGRRDCTGKMI 251 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 +TIDGED++D DDAV C +K GG+RL V IADVS+YV ++PLD+EA RGTS Y + Sbjct: 252 ITIDGEDSKDLDDAV-CVEKIAGGYRLGVHIADVSHYVPENSPLDQEALKRGTSTYVVDR 310 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 V+PMLP +LSNG+CSLNP+V RL + CEM +S G + Y+ + + + + R+TYT V Sbjct: 311 VVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEILNYEIFPSFIKTTERMTYTAVNA 370 Query: 389 ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIE 448 IL+G+++ +Y L + + + + + + K R E G I FE+ EAK I N + +IE I+ Sbjct: 371 ILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAKIILNEQNKIEEIQ 430 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 +R +A +IE+ M+ AN AR ++ + PAL+R+H+ P + + F ++ +G Sbjct: 431 VRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLRDFAKIVLLMGKRF 490 Query: 509 PGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 G + P +LL+S D P ++ TM+LRSM++A YDP GHFGLAL+ Y HFT Sbjct: 491 KGSVEQIRPLQLQQLLDSFKDDPAYPVISTMMLRSMQKAKYDPRCLGHFGLALEEYTHFT 550 Query: 568 SPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 SPIRRYPDL +HR + KY G + +M + G+ S ER A EA Sbjct: 551 SPIRRYPDLIVHRMLHKYGF-------GTALDPEMMKQDELKMEEYGKLTSERERAAIEA 603 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R+V D K ++M DQ+G + +GVIS VT FGFFV L++ ++GLVHV L +DYY +D Sbjct: 604 EREVEDMKKAEYMEDQIGKIAEGVISGVTKFGFFVELENT-VEGLVHVQKLTDDYYHYDP 662 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 L GE + + YRLG RV+++V + ++IDF L+ + R A++KA Sbjct: 663 DTLSLKGERTKKIYRLGQRVKIKVTGASKLHQEIDFDLVRPRKEKREPIPAAKKKA 718 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 248/712 (34%), Positives = 404/712 (56%), Gaps = 28/712 (3%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E +L+ + K +P S E++ ++ E+ + L+R L+ + G+++ R+ Y + Sbjct: 4 EEVLDFIKKSGRPLSFREISESFGLKASER-KKLKRMLKELLSQGKILRNRKGLYLTIKE 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 L+ G H++G+GF+ + K+ D+++ +HGD+V+A+ +++ +RE R Sbjct: 63 AKLITGFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMHGDRVVAR---VEQRKKREGR 119 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 IVR+L T ++VG + ++ P ++ I+I I G +V+ E+ Sbjct: 120 IVRILERATRRVVGIVEKSGPIFYIQPRKKNINQQIVIASGDI-KVNPGSLVLAEIVTYQ 178 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-----VPEE 255 V KI++V DI + T+E Y P+ ++V+ EE + ++ Sbjct: 179 AVNKPLVAKILKVFEKPKTPKE--DIEILTYE--YELPKKFSKEVSNFSEELSLKGISKK 234 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 RVDLR+LP VTIDGE+A+DFDDAV +K R G + LWV IADVS+Y++ ++ +D E Sbjct: 235 QFKNRVDLRELPTVTIDGENAKDFDDAVSIKKIRNG-FILWVHIADVSHYIKWNSTIDGE 293 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 AR+RGTSVY P +VIPMLP LS LCSL P++ RL EM S+ G FY +++ Sbjct: 294 ARHRGTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMHFSNSGERKESLFYPSII 353 Query: 376 SSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + R+TYT V IL D++ ++Y PLV + E++ L ++L R++RG + F+ E Sbjct: 354 QTAERMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEILKNKRKKRGSLDFDLPEP 413 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 + + + + I + +RN AH +IEE MI AN + A F+ P+L+R+H++P T I Sbjct: 414 EVLLDIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYSNNIPSLYRVHEEPETNKI 473 Query: 495 TSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 ++ LG+ +P D+ E +E + P E++ ++LRS+KQA Y EN G Sbjct: 474 QYITRIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVNYLILRSLKQARYSSENVG 530 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML-QLG 613 HFGLA + Y HFTSPIRRYPDL +HR +K L K + + E ++E+L + Sbjct: 531 HFGLASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQKE-------LKEILPHIA 583 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S ERRADE RD ++ FM D+VG F+G ++ VT G VRL++ +I+G +H Sbjct: 584 IHSSRMERRADEVERDAIQIMRVWFMKDKVGEEFEGRVTMVTPEGLRVRLEEYYIEGFLH 643 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +S + +D+Y+FD+ L+G + + +G ++ VRV V+++ER+I F L+ Sbjct: 644 LSHMIDDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEEREIIFDLL 695 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/705 (36%), Positives = 390/705 (55%), Gaps = 14/705 (1%) Query: 28 LTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY-ALPERLDLVK 86 L+ KP EL + + EQ + +R ++ +E++G++ R Y L E DL Sbjct: 14 LSDDYKPMVLKELYKKFRAKTREQRKKVREVVKKLEKEGRIFRDSRGRYRKLGE--DLKV 71 Query: 87 GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV 146 GT+ R GY + +++ + E K +H D+V+ + G R G R+VRVL Sbjct: 72 GTIEFTRSGYVAFVITDDFEEIAVPVEDTKYAMHKDRVVVEITGTWR-GLPRGRVVRVLE 130 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++VG + + GFVVPDD ++++D + P+ I GA+ V+ E+ + P+ Sbjct: 131 RGLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPENIDGAKPNQKVIAEILKYPSPGKNP 190 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYI--WPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 K+V+VLGD + + + H++P +P+ V ++ + V ++ GR DLR Sbjct: 191 EAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKDLR 250 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 D +VTIDGEDA+DFDDA+ EK G + L V IADVS+YV+ + LD+EA RGTSVY Sbjct: 251 DKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVY 310 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 VIPMLP LSNG+CSL DRL M EM + GR+ Y Y +V+ S R+ Y Sbjct: 311 LIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYE 370 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI-SFESEEAKFIFNAERR 443 +V L+ ++E Y P + L ++L +AR +RG I ES+E K I + + Sbjct: 371 RVNEFLEDPSSMKE-YEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILDENGQ 429 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 + I +R A KLIEE MI AN + A + A P ++R+H++P E I ++ L Sbjct: 430 VVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLKNYLEA 489 Query: 504 LGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSY 563 +G+ +K P +LLE V D P ++ +L+RSMK+A+Y N GHFGLA +Y Sbjct: 490 MGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGLASYAY 549 Query: 564 AHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRA 623 HFTSPIRRYPDL +HR +K L + G T +S + + ++ +HCS ER A Sbjct: 550 THFTSPIRRYPDLVVHRLLKLYLEQ----NGYFTPEQIEKFS-KVLPKIAKHCSRRERVA 604 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 DEA D+ K +++ +G VF V++++T FG FV + + I GLVH+S+LD DYY Sbjct: 605 DEAEWDLVAMKKVEYIARHIGEVFNVVVTNITKFGLFVEIPEKSISGLVHISTLD-DYYY 663 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +D+ L+G+ G+ +RLGD ++ +V + +IDF L+ + Sbjct: 664 YDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLVEED 708 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/708 (36%), Positives = 381/708 (53%), Gaps = 22/708 (3%) Query: 84 LVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 ++ GT+ H DG+GF + ++ D+Y+ M+ + D+V + R + Sbjct: 6 ILTGTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFRGELD 65 Query: 143 RVLVPKTSQIVGRYF-TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 VL T +VGR+F G + + D+ I + M A+ +V E+T P Sbjct: 66 HVLSRGTKTVVGRFFKMNERTGLIRDEGKGWGQDLKIKIEDSMQAKDKELVAAEITSYPD 125 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 GK++E++GD M + +R + IP + +A ++ E E+ GR Sbjct: 126 DGKPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDEKDFKGRR 185 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLRD L+TIDG A+DFDDAVY E G+ L+VAIADVS+YV+ T +D++A RGT Sbjct: 186 DLRDKALITIDGATAKDFDDAVYVET-LNEGFLLYVAIADVSHYVKIGTAIDKDAYERGT 244 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVY P+ V+PMLPEVLSNGLCSLNP V RLC+V EM G L FYEAVM S AR+ Sbjct: 245 SVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKSDFYEAVMESKARV 304 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 TY + I+ G++ E++ + H+ L +L K+L R + G + E E + + + Sbjct: 305 TYGEAQEIIDGNE--VEKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPETELVIDGA 362 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 I++++R AH+LIEE M+ AN++ A+F+ + PAL+RIH+ P+ AI + L Sbjct: 363 GVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIHEPPNEMAIRTLEKYL 422 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 A G + G+ + + LE RP+A++L + LRSM QA Y+ N GHFGL + Sbjct: 423 ANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNVGHFGLGFE 482 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPDL +HR +K + ++ S +++ G S AE+ Sbjct: 483 FYTHFTSPIRRYPDLIVHRLLKTQVMPNSRYR---------LMSEDDLATAGTILSAAEQ 533 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 R+ +A R V K FM +G F G+ISSV FG FV L + IDGLV + L D Sbjct: 534 RSTKAERQVQSIKKARFMQKFIGQEFDGMISSVAKFGVFVLLREYDIDGLVRLDDLGGDR 593 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 + FD+ RL+ + SG Y +GD + ++V A + ++ +I+F+L E+ + +T E+ Sbjct: 594 FEFDEENLRLVAKRSGFAYSIGDSIRIQVVAADPEQGQINFALAGLEKEEHDDARTPAER 653 Query: 742 AKKGDAGKKGGKRR-----QVGKKVNFEPDSAF-RGEKKTKPKAAKKD 783 + + G +R GKK + D F RGEK+ KA KD Sbjct: 654 SASAVLKRLHGDKRPKDHISHGKKKH--QDREFERGEKRADKKAGNKD 699 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 241/726 (33%), Positives = 403/726 (55%), Gaps = 27/726 (3%) Query: 21 REFILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE I+++L K A S +EL+V LH+ + + + L ++E + L FT + L Sbjct: 4 REVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLNFTAKGKVELA 63 Query: 80 ERLD---LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ---PLGADR 133 E+ + ++ G + G+GF+ ++ + D++++ Q + GD+V + A + Sbjct: 64 EKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNANALK 123 Query: 134 KGRREARIVRVLVPKTSQIVGRYFT-------EAG-VGFVVPDDSRLSFDILIPPDQIMG 185 E +V ++ Q+VG + + G +GFV + ++ + + + + ++ Sbjct: 124 GTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEGLIP 183 Query: 186 ARMGFVVVVELTQRPTRRTKAV--GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 +V VE+T P + G + E++G G+ V L + +I +P+ V Sbjct: 184 ENKA-IVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVLD 242 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 Q + EEVPE GRVD R+ TIDG DA+D DDAV+ ++ G + L V IADVS Sbjct: 243 QAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVS 302 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV ++PLD+EA RGTSVY +V+PMLPE LSNG+CSLNP+++RL C M +S +G Sbjct: 303 HYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEG 362 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 R+ Y+ ++++ + R+TY V ++ GD+ E YA + ++ + L+ +L+ R+ Sbjct: 363 RVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKR 422 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I F++ EAK I N + I + R A ++IE M+ AN + A E P ++ Sbjct: 423 RGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPFIY 482 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 RIH++P + + F A G+++ G N + + ++ + +P +L TMLLRS Sbjct: 483 RIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRS 542 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M+QA Y N GHFGLA ++Y HFTSPIRRYPDL +HR I+ + +G T Sbjct: 543 MQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREI------GEGKTPANILQ 596 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + +++ ++ +H S ERRA +A R+V K +FM + VG ++G+I+SVT FG F+ Sbjct: 597 KWE-DKIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFIE 655 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L++ I+GLVH+S+L DY+ + + L+GE SG T+++G ++++V + +IDF Sbjct: 656 LENT-IEGLVHISTLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEIDF 714 Query: 723 SLISSE 728 + SE Sbjct: 715 EYLPSE 720 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/709 (34%), Positives = 394/709 (55%), Gaps = 16/709 (2%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E ILE L+ S D +A +L+ ++ L + + +E +G++V + Y LP Sbjct: 2 KEKILELLSDENYLERSIDLIAAKLNCNKSDKFVNLVKLMNELEDEGKVVRNKYNHYYLP 61 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + ++ GT+ ++ G+GF+ VE ++ D+++S + +K + D VL + + R E Sbjct: 62 NQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNKDTVLVELKKHSDEERPEG 121 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL-TQ 198 R++RV+ +++VG FV DD I + + GA G V VE+ T Sbjct: 122 RVIRVIKRGQTRLVGEIKKGKRDCFVDVDDPMFDKPIFVDRAHLHGAMPGHKVQVEIKTY 181 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 +P + G +V++LG G+ + + H+ P +PQAV Q+ + + + Sbjct: 182 KPILK----GDVVKILGHRNDPGIDILSIVYEHDAPVEFPQAVYDQIENIPDSLEGIDIG 237 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R+DLRD +VTIDG+DA+D DD + +K G + L V IADVSYYV +PLD+EA Sbjct: 238 QRIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVHIADVSYYVTEESPLDKEAFA 297 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTS+Y +VIPMLP LSNG+CSLNP VDR + C M + G + + AV++S Sbjct: 298 RGTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFMEIDENGEVVEHDIVPAVINST 357 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+TYT V IL GDQ L+ QY+ + + L +L + RG I F+ +EAK + Sbjct: 358 ERMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMILQAKKARRGAIDFDVKEAKVLV 417 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 +++ + +R + ++IEE M+LAN + A + + P ++R+H+ P + + F Sbjct: 418 DSKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWLELPFIYRVHENPKPKKLLQFS 477 Query: 499 SVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + LG + G P + + ++E D P+ ++ T+LLR M++A YD + GHFG Sbjct: 478 GIAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIATLLLRCMQKARYDEQCLGHFG 537 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 LA + Y HFTSPIRRYPDL +HR I KY+ N + + E M ++ Sbjct: 538 LADEYYTHFTSPIRRYPDLIVHRLIRKYMFE-------NRLDRRTIMHYQELMPEIALQT 590 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A R+V D +FM Q+G F+G+ISSVT FGFFV LD+ IDGLVHV+ Sbjct: 591 SAREREAIMIEREVDDMKIAEFMEKQIGEEFEGIISSVTNFGFFVELDNT-IDGLVHVTD 649 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L +D+Y FD+ R +G+ +G+ +++ DRV+VRV + + ++ +DF ++ Sbjct: 650 LTDDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKDKSVDFEIV 698 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/716 (35%), Positives = 393/716 (54%), Gaps = 26/716 (3%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQ------LEGLRRRLRAME-RDGQLVFTRR 73 +E ILE + K KP ++++LA +I+ ++ LE L+R+ E + +L+F Sbjct: 3 KEKILE-VIKNSKPQTKEDLAKVFNIKKRDRENFYFLLENLQRQGLVFEDKKAKLIFVDN 61 Query: 74 QCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR 133 + Y G + + G+GFL E +D+Y+S E + ++GD V+ + Sbjct: 62 KTYFF--------GKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKDSS 113 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 + E ++V ++ ++VG + GFVV DD++ + DI IP ++ GA+ G V+ Sbjct: 114 GSKPEGKVVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKRMNGAKNGQKVL 173 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 V++ + P+ K G+++E+LG + + ++ +IP + + V+++ L+ V Sbjct: 174 VKIDKWPSPGKKPEGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSLETSVQ 233 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E R+DLRD TIDG D++DFDDAV E G + L V IADV++YV+ +P+D Sbjct: 234 AEEIKSRLDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKEDSPID 293 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA RG SVY ++VIPMLP LSNG+CSLN VDRL + C M V KG++ K E+ Sbjct: 294 EEAFLRGNSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINKKICES 353 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++S RL Y V L+ D + L + L+ ++ L K+L + R E G I FE E Sbjct: 354 VINSKKRLVYDYVSDYLE-DGVSDDSLIGLEETLKNMYELSKILQEKRREMGSIDFEVPE 412 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 A + I + +R A+KLIE+ M+LAN + A + K + P L+RIH+KP E Sbjct: 413 ALIKVTEDGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHEKPREEK 472 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I S L LG G++ + RD +LL+ V + + + TM LR+M +A Y P+N Sbjct: 473 IQELNSYLRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKARYSPKND 532 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 HFGL Q Y HFTSPIRRY DLT+HR IK L +G+ ++ + +++ + Sbjct: 533 IHFGLCFQYYTHFTSPIRRYADLTVHRIIKDFL------RGDLSKNKVKKLN-DDLQGIS 585 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +H S ER A EA R V ++M D++G + G+IS +T FG FV L++L I+GLV Sbjct: 586 EHISATERVAQEAERQVESIKMAEYMSDRIGKKYNGIISGITNFGIFVELENL-IEGLVS 644 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 ++ +Y FD V R + + ++ +GD V ++V VN+ KIDF L S + Sbjct: 645 YKTMKG-FYEFDPVNYRAVDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFELESDDN 699 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/741 (34%), Positives = 393/741 (53%), Gaps = 62/741 (8%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P ELA+ L+I + Q E L L A+ +G++ +++ Y E V G GH Sbjct: 24 PMKAKELAILLNIP-KSQREDLMEVLNALVAEGRIGVSKKGKYGKAETFS-VNGIFSGHP 81 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV-----------LAQPLGADRKGRREARIV 142 G+GF+ VEG + D+++ ++ +HGD+V ++ R E ++ Sbjct: 82 KGFGFVTVEGMEQDVFIPEDKTGAALHGDRVQIVVEHDSRMSGSRSGMGSGGRRAEGAVI 141 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 RVL +IVG Y GFV+PD+ +L+ DI IP MGA G VVV++T + Sbjct: 142 RVLEHANQEIVGYYQKNKNFGFVIPDNQKLAKDIFIPQGCDMGAVTGHKVVVKITDFGSE 201 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP--------- 253 + K G++ E++G G + +R + +P +PQ V +++ + E+V Sbjct: 202 KHKPEGRVTEIIGHVNDPGTDILSIVRAYGLPEAFPQEVMEEIEDIPEDVTVPGQPYVPG 261 Query: 254 ------EEAK--------------------AGRVDLRDLPLVTIDGEDARDFDDAVYCEK 287 + AK +GR+DLR L VTIDGEDA+D DDAV + Sbjct: 262 QTDIPGQPAKPGSPYGISDLTSHDGWGGELSGRLDLRGLQTVTIDGEDAKDLDDAVTICR 321 Query: 288 KRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 G + L V IADVS+YV+ +PLDREA R TSVY +VIPMLP LSNG+CSLN Sbjct: 322 DNQGHYILGVHIADVSHYVKEGSPLDREAFKRSTSVYLVDRVIPMLPHKLSNGICSLNAG 381 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKH 406 DRL + C M V +G + ++ E V+ R+TYT V I+ D+ + +Y V Sbjct: 382 TDRLALSCIMEVDGQGTVLDHRIAETVIHVDRRMTYTAVNAIVTDRDEAVMAEYEDFVPM 441 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 + + L +L ++R +RG I F+ E+K + + + + I+ +RN A ++IE+ M+LA Sbjct: 442 FDCMKELADILRESRRKRGAIDFDFPESKIVLDGQGKPLEIKPYERNAATRIIEDFMLLA 501 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG--LELPGGNKPEPRDYAELLE 524 N + A P L+R HD P E + + + G +++ G + P++ +LL+ Sbjct: 502 NETVAEDYYWQSIPFLYRSHDNPDPEKMKQLGTFINNFGYFIKMQHG-EIHPKELQKLLD 560 Query: 525 SVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKY 584 + P+ +L + LRSMKQA Y + GHFGLA + Y HFTSPIRRYPDL +HR IK Sbjct: 561 KIEGTPEEALLSRLTLRSMKQAKYTTQCSGHFGLATRYYTHFTSPIRRYPDLQIHRIIKE 620 Query: 585 LLAKEQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 L +G ++ HY E++L ++ S ERRADEA R+ KC++M + Sbjct: 621 TL------KGGLSDKRAGHY--EKILPEVAVQTSALERRADEAERETDKLKKCEYMSRFI 672 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F G IS VT +G +V L + ++GLV +S LD+DYY FD+ L+GE + +TY+LG Sbjct: 673 GQDFDGAISGVTNWGLYVELPNT-VEGLVRMSDLDDDYYIFDEQHYELIGEMTKKTYKLG 731 Query: 704 DRVEVRVEAVNMDERKIDFSL 724 + V V + + R +DF L Sbjct: 732 QPIRVTVSSTDRLLRTVDFIL 752 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 260/696 (37%), Positives = 389/696 (55%), Gaps = 23/696 (3%) Query: 34 PASRDELAVELHIEGEE--QLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIG 91 P EL + L ++ E+ QLE + L+A +G++ ++R Y+ E V G Sbjct: 33 PMKIKELCIVLGVKKEDRPQLEQILLDLQA---EGRITLSKRGKYSKSEIKKTV-GVFTA 88 Query: 92 HRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD--QVLAQPLGADRKGRREARIVRVLVPKT 149 H+ G+GF+ VEG DD+++ +E + +H D ++ P+ R R+E ++V V+ Sbjct: 89 HQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISPVTTGR--RKEGKVVSVIERGM 146 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 Q+V Y GF VPD++R DI IP ++ GA G VVVE+T + K GK Sbjct: 147 KQVVCTYEASDNFGFAVPDNTRFGTDIFIPKERSKGAMSGHKVVVEITSYGKKGKKPEGK 206 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 +VE++G G + ++ +++P + + + QV + ++V AGR+DLRD +V Sbjct: 207 VVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQNVAKDVTPADMAGRMDLRDWMMV 266 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TIDGEDA+D DDAV G + L V IADVS YV+ + LD EA RGTSVY +V Sbjct: 267 TIDGEDAKDLDDAVSLYMD-GDNYVLGVHIADVSNYVQEHSALDVEALKRGTSVYLVDRV 325 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 IPMLP LSNG+CSLN DRL + C MT++ KG + +K E V+ ++ R+TYT V I Sbjct: 326 IPMLPRELSNGICSLNEGCDRLALSCIMTINKKGEVIDHKIAETVIKTNRRMTYTNVKKI 385 Query: 390 L-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIE 448 L D + E+Y LV E++ L +L K R +RG I F+ E K + + + I+ Sbjct: 386 LADKDAAVIEEYKELVPMFEKMAELAAILRKKRMKRGSIDFDFPETKVVLDEDGHPIDIK 445 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 RN A KLIE+ M++AN + A + P ++R HDKP +E I + + G L Sbjct: 446 PYDRNVATKLIEDFMLIANETVAEDYFWQEIPFVYRTHDKPDSEKIAKLSTFINNFGYTL 505 Query: 509 P-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 G ++ P++ +LL V + ++ + LRSMKQA Y GHFGLA Y HFT Sbjct: 506 HIGADEVHPKELQKLLMKVDGTDEESLISRLTLRSMKQARYTTACTGHFGLAANYYCHFT 565 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ-LGQHCSMAERRADEA 626 SPIRRYPDL +HR IK + +G + HY E +L + + S ERRA+EA Sbjct: 566 SPIRRYPDLQIHRIIK------ENIRGRMNDNRREHY--ESILDAVAKQASETERRAEEA 617 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R+ KC++M + +G F+GVIS VT +GFFV L + ++GLV V+ L +D+Y F + Sbjct: 618 ERETVKLKKCEYMSNHIGECFEGVISGVTEWGFFVELPNT-VEGLVRVTDLTDDFYEFYE 676 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L G ++ + Y+LG +++V V++ + R IDF Sbjct: 677 DTYELAGTATNKRYKLGQKIKVVVDSADKIMRTIDF 712 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/662 (38%), Positives = 355/662 (53%), Gaps = 34/662 (5%) Query: 85 VKGTVIGHRDGYGFL-RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVR 143 V GT+ HRDGYGF+ R++ + DD+++ + + GD V + + A R GR R+V Sbjct: 97 VVGTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLVRVEIVPA-RGGRTAGRLVE 155 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 V+ + ++G Y FVVP D L + +P + A+ G VV V L R Sbjct: 156 VIERRRRLLIGTYHARGARSFVVPADEELGEAVPVP--ETAAAQDGDVVKVALEPGTARL 213 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 G +VE +G + V ++P+ V + + V E + GR DL Sbjct: 214 Q---GAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAEAEATPDRVRPEDRQGRRDL 270 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRG--GGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 LPLVTIDGEDARDFDDAV+ E+ G G +RL VAIADV++YVRP LD EA RGT Sbjct: 271 TALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADVAHYVRPGAALDAEAGRRGT 330 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVYFP QV+PMLPE LSNG+CSLNP VDRLCMV ++ V G + YE VM S AR Sbjct: 331 SVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEHGETRSAEVYEGVMRSAARC 390 Query: 382 TYTKVWHILQGDQ-----DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 TYT+V +++ G RE++ + + E+L + R RG + F+ EAK Sbjct: 391 TYTEVANVVAGQSVPGRDRFRERFLLMAELQEKLTAM-------RGRRGALDFDLPEAKI 443 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + IE+ RN AH+++EE M+ AN + AR+ + P ++RIHD P E + + Sbjct: 444 VLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTIYRIHDVPDEEKLQA 503 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 F + G E+P P PR LL L +LLR+M QA+Y EN GH+ Sbjct: 504 FLDLAESHGFEVP--EVPGPRALNALLGRFQGHAQQRALNQLLLRAMMQAVYATENIGHY 561 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA Q Y HFTSPIRRYPDL +HR +K A+ QG S + ++ Sbjct: 562 GLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREP-------SPAALAEMAAVS 614 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A EA RD+A + FM D+VG ++GVIS+V FG FV L F++GLV + Sbjct: 615 SERERAAMEAERDIAAFYAALFMKDKVGERYEGVISAVVEFGLFVELKRWFVEGLVRLED 674 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 L D L+ ++G+ +R+GD V V V + + R+I+ L+ +A +GK Sbjct: 675 L-GGAPELDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIELKLVEEAKA---IGK 730 Query: 737 TA 738 A Sbjct: 731 PA 732 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 251/718 (34%), Positives = 404/718 (56%), Gaps = 20/718 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E +L+ +T R +P EL+ L + +E+ + L+ + ++ DG+++ Y Sbjct: 10 KELLLQVITDRSYRPMKFRELSSLLQVPKDER-DDLKIVMDSLISDGKIMLDGNGRYK-E 67 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKD--DLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 ++ G G G+GF+++EG ++ D+++ + K ++ D+V RR Sbjct: 68 TNGNIKTGIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRRR 127 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E ++ +L +++VG + GFV+ D+++ + D+ IP + GA G V+V+LT Sbjct: 128 EGAVISILERNVTELVGTFQKSKNFGFVIADNTKFNSDVFIPKEHTKGAVNGHKVLVQLT 187 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + GKI++++G G+ V + + +P +P V +QV + EEV Sbjct: 188 DYGSETKNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVERIGEEVSSADI 247 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GRVDLR+L VTIDGEDA+D DDA+ KK G ++L V IADVS YV +PLD+EA Sbjct: 248 GGRVDLRNLQTVTIDGEDAKDLDDAITLSKK-GDIYQLGVHIADVSNYVTEDSPLDKEAL 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP LSNG+CSLN DRL + C M + KG + G++ E V++ Sbjct: 307 KRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGHRIAETVINV 366 Query: 378 HARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V I++ D+ E+Y LV E + L +L + R +RG I F+ E+K Sbjct: 367 DRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDFPESKI 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 I +++ R I+ +RN A K+IE+ M++AN + A + P ++R H+ P E I Sbjct: 427 ILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDLEKIQK 486 Query: 497 FRSVLAELGLEL-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + G + G ++ P++ +LL + +P+ ++ + LRSMKQA Y GH Sbjct: 487 LSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTTTCDGH 546 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML-QLGQ 614 FGL+ + Y+HFTSPIRRYPDL +HR IK + +G E HY E +L ++ + Sbjct: 547 FGLSTKYYSHFTSPIRRYPDLQIHRIIK------ENLRGGLKEKRINHY--ESILNEVAR 598 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S+AERRADE+ R+V K ++M +G F+GVIS VT +G +V L + ++G++ + Sbjct: 599 QSSLAERRADESEREVEKLKKVEYMSQFIGQTFEGVISGVTSWGMYVELPNT-VEGMIRL 657 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 + + +DYY +D+ L GE + + Y+LG+ V +RVE + R I+FS++ RA R Sbjct: 658 ADMHDDYYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTINFSIVG--RANR 713 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/687 (36%), Positives = 368/687 (53%), Gaps = 30/687 (4%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTC 118 L + G +V TRR+ Y LPE + LV+G G+GF+ + +D Y+ +EQ Sbjct: 228 LETLVESGTVVRTRRRTYGLPEAMSLVRGKFQASAAGFGFVVPDSGGEDYYIPAEQTLEA 287 Query: 119 IHGDQVLAQ-------------PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFV 165 +GD VL + G G A +VR++ S++VG G + Sbjct: 288 WNGDIVLVRMEGRGDSGRGGGPRRGQRGDGNPRASVVRIVQRAYSKLVGTLEFHHGHPIL 347 Query: 166 VPDDSRLSFDILIPPDQIMGARMGFVVVVEL-TQRPTRRTKAVGKIVEVLGDNMGTGMAV 224 PDD R IL+ P+ + G + G VV EL T + G++V VLG+ Sbjct: 348 KPDDHRARHRILVLPEGLEGLQAGARVVTELFWPENTGEDEVFGQVVRVLGEQDDPETET 407 Query: 225 DIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVY 284 + + + +P V + A + E+P EA GR+DLR+ + T+DG DA+DFDDA++ Sbjct: 408 EAVIVKFGLRGEFPGEVMAEAAAIPTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIH 467 Query: 285 CEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344 + G + + V IADVS+YVR TPLD EA R TSVY P +V+PMLPE LSNG+CSL Sbjct: 468 IQPTPEGTFVVGVHIADVSHYVREGTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSL 527 Query: 345 NPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLV 404 P DRL M + +S++G + K +V++S ARLTY +V + L + Sbjct: 528 VPYQDRLTMTALVELSAEGDILDVKIAPSVINSKARLTYDEVQAYSEATATLPDH----A 583 Query: 405 KHLE-ELHNLYKVLDKAREER---GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 +HLE +LH L K+ K R++R G + F+ E K + R+E I + A +IE Sbjct: 584 RHLEGDLHLLLKITSKLRQKRLREGSLDFKMREVKVDVGPDGRMELIP-IREETARGMIE 642 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 + M+LAN A ++ + + P LFRIH++P+ + + LGL PGG +P P+ Y Sbjct: 643 DLMLLANKVVAHYLLQREIPTLFRIHEEPTLQRFQEVSQAIGRLGLAFPGG-EPTPQAYQ 701 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 +L+ V P ++ T+LLRSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR Sbjct: 702 AVLKQVRGTPRESVVNTLLLRSMQQAKYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHR 761 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 +K +L E + E + M G H S ER A EA RD+ + + + Sbjct: 762 VLKGVLGGEL--KAGNREVAKLQGRLPAM---GDHTSDRERTAAEAERDLTKYYQAKWAQ 816 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 + + F G +S V G +V LD+ ++G +H+S+LD+DYY + + Q L G S G+T+ Sbjct: 817 EHLQETFAGNVSGVVASGLYVALDN-GVEGKLHISNLDDDYYVYIEDAQMLRGRSGGRTF 875 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLISS 727 RLGD V V + AVN R ID +L S Sbjct: 876 RLGDSVTVTISAVNPMARMIDLTLGDS 902 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 252/698 (36%), Positives = 377/698 (54%), Gaps = 42/698 (6%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKT 117 L+ + R+G+++ Y + E+++LV G + R G FL + +K D+Y+ ++ ++ Sbjct: 52 LKDLVREGKIIKIG-SAYGVVEKMNLVTGKLQVQRSGAAFLLPDDKKRKDIYIHTKNLRD 110 Query: 118 CIHGDQVLAQPLGADRKGRRE-ARIVRVLVPKTSQIVGRYFTEAGVGFVV--PDDSRLSF 174 HGD+V G+ G+RE R+VRVL R G ++ P D RL F Sbjct: 111 AWHGDRVTVAITGSHWGGKREEGRVVRVLERGKQVFPVRVIRPMGGTALLCHPTDPRLDF 170 Query: 175 DILIPPDQIM-------------------GARMGFVVVVE---LTQRPTRRTKAV---GK 209 I++ PD+ + A + F V L P + G+ Sbjct: 171 GIVVEPDEAVVNEPVLDDNGREIYPAESVDAEVDFTRVSRGDILLVAPGEQINPSLWEGR 230 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 I+++LGD + I H IP +P V L +E EE A R D+RD+P V Sbjct: 231 ILKMLGDEDDAIVQEAIVKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFV 290 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TIDG A+DFDDAV+ EK GG+RL VAIADVS+YV +PLDREA RG S YFP V Sbjct: 291 TIDGATAKDFDDAVFVEKI-AGGYRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSV 349 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH- 388 PM PE LSNGLCSLNP V+RL M + G F AV+ S RLTY +V+ Sbjct: 350 EPMFPEALSNGLCSLNPDVNRLAMTATIEFDKSGAPVNSSFAPAVIRSQGRLTYEQVYQG 409 Query: 389 ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIE 448 ++ G+++ +E L+ L+ L + ++K R RG + F+ E + +FN + R I Sbjct: 410 VILGEKEEQESLGDLLPMLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIR 469 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 RN AH+++EE MI AN + A F+ + + L+R+H P E +T+ VL ++G+ Sbjct: 470 PRCRNFAHQIVEEFMIAANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISK 529 Query: 509 PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTS 568 + P+ E+++ ++ +LLRSMKQA Y+P+N GHFGLA + Y HFTS Sbjct: 530 QIPDPVTPQTLQEVIKDSEGTDQEYIVSRLLLRSMKQAKYEPDNEGHFGLASECYCHFTS 589 Query: 569 PIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATR 628 PIRRY DL +HR +K L E HQ + +++ ++G S ER A EA R Sbjct: 590 PIRRYADLVVHRLLKVALGDE--HQAIPGQ--------KQLGRIGSAISGTERTAMEAER 639 Query: 629 DVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVG 688 ++ L F+ D+VG F GVISS+ FGF+V ++ +G+V +SSL +DYY F Sbjct: 640 EILKRLTIIFLKDKVGEEFTGVISSIAEFGFWVEFQEVMAEGMVRLSSLGDDYYTFWSDR 699 Query: 689 QRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 Q ++GE +G +RLG ++ VR+E+V+++ + + SL+S Sbjct: 700 QMIVGERTGHAFRLGQKITVRLESVSLELLEANLSLVS 737 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 273/750 (36%), Positives = 403/750 (53%), Gaps = 45/750 (6%) Query: 22 EFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E ILE+L K K S E+ L +E EE ++ L + + G+L+ RR YALPE Sbjct: 3 ERILEYLRKNPTKTYSLREVQRMLRLEREE----VKSALAELVKQGRLIEPRRGLYALPE 58 Query: 81 RLDLVK-------GTVIGHRDGYGFLRVEG-----------RKDDLYLSSEQMKTCIHGD 122 K G + H G+GF+ + + DLY+ E + HGD Sbjct: 59 AKPAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAWHGD 118 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 QVLA P R R ++ +VL S++ GR G +V+PDD RL + + P+ Sbjct: 119 QVLAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLEPEG 178 Query: 183 IMGARMGFVVVVEL--TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW-PQ 239 + G G + VEL Q + + +E LG + H++ + P+ Sbjct: 179 LAGLEQGARIAVELHFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLKSEFDPE 238 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 A+ + A + E +P E A R D R L + TIDG DA+DFDDA++ E+ G +R+ V I Sbjct: 239 ALAEAEA-IPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHI 297 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVS+YVR + LD+EA RGTSVY P +V+PMLPE LSNG+CSL P DRL + + + Sbjct: 298 ADVSHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEI 357 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDK 419 + GR+ + F E V+ S ARLTYT+V +G + + +++ L L L L + L Sbjct: 358 TDGGRVLRHSFREGVIRSKARLTYTQVQAFAEG-KGMPDEFKWLEPDLALLLELTRKLKA 416 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 R G + F E K I I QT+ DA LIEE M+LAN A+++ Sbjct: 417 KRVAAGALDFHFTEVKVDIGEAGEIHLIPQTE-PDARSLIEELMLLANRIVAKYLSDKGL 475 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 PAL+R+H+ P+ A + L++LG ELP G +P P+ +L+ V +P+A M+ T+L Sbjct: 476 PALYRVHEDPTDMAYAKLAAQLSKLGYELP-GMEPSPKAMQAILKQVEGKPEAPMVSTLL 534 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRS+K A Y EN GHFGLA + Y HFTSPIRRYPDL +HR +K L+ + T Sbjct: 535 LRSLKLARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRR------RLTPE 588 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 H+ E ++ +H S ER A+ A RD+ + +C + G F GV+S VTGFG Sbjct: 589 KVEHWR-EVFPRMAEHTSSRERSAEAAERDLTKYYQCCWAELHKGERFGGVVSGVTGFGV 647 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV L++ ++G+V +SSL +D+Y + + L+G + + R+GD +EV ++ VN+ R+ Sbjct: 648 FVALEN-GVEGMVRLSSLLDDHYEYVEETLSLVGTRTKRRIRIGDPLEVVIQGVNLPTRQ 706 Query: 720 IDFSLISSERA---PRNVGK--TAREKAKK 744 I+ L+ +E A P N K +RE ++K Sbjct: 707 IE--LVPAEFAAVRPSNTAKPEISREVSRK 734 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 227/670 (33%), Positives = 364/670 (54%), Gaps = 29/670 (4%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 + + GT + + G+GF++ + +DDL++ + D+VLA + + GR E +I Sbjct: 10 NFINGTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVPEGKI 69 Query: 142 VRVLVPKTSQIVGRYFTEAG---------------VGFVVPDDSRLSFDILIPPDQIMGA 186 ++L ++VG + + +G + +D +L + + + Sbjct: 70 EKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKGLQP 129 Query: 187 RMGFVVVVELTQRPT--RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 + V +Q PT R +G + V+G + G+ + + + +IP +P+ QQ Sbjct: 130 QDRDSVTATTSQFPTSDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPEDAAQQ 189 Query: 245 VAGLKEEVPEEAKA--GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + + + +A GR D RD PL+TIDG D +D DDAV K G + L V IADV Sbjct: 190 AKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIADV 249 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S YV T LD EA RGTSVY +VIPMLP +SNG+ SLNP DRL M CEM ++ + Sbjct: 250 SNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEMEINQE 309 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G++ +K +++ SHAR+TY + IL GDQ +YA L + + ++ +L+K+L R+ Sbjct: 310 GQVVKHKIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKILAAMRK 369 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 +RG I FE++EA+ I +A+ + R ++IE M+ AN + A + P L Sbjct: 370 KRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDHLHVPFL 429 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKP-EPRDYAELLESVADRPDAEMLQTMLLR 541 +R+H+ P + + +F + +G + K P+D+ L++VA P+ M+QTM+LR Sbjct: 430 YRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMIQTMMLR 489 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 + KQA Y P+ GHFG+A + Y HFTSPIRRYPDL +HR IK+ G G Sbjct: 490 ATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSSTDAVRG- 548 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ Q+G S ERRA +A R D ++M D +G+++ GV++S FG F+ Sbjct: 549 ------KLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGDIYDGVVNSALKFGLFI 602 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L + I+GL H+S++ +D Y++D+ Q L+G + + + +G +V+VRV N + RKID Sbjct: 603 SLPNT-IEGLAHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKETRKID 661 Query: 722 FSLISSERAP 731 F LI + AP Sbjct: 662 FELIDPQSAP 671 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/679 (34%), Positives = 376/679 (55%), Gaps = 23/679 (3%) Query: 53 EGLRRRLRAMERDGQL-VFTRRQCYALPE-RLDLVKGTVIGHRDGYGFLRVEGRK-DDLY 109 + +R ++ +E++ ++ V +++ L + ++L+ G + + GYGF + R +D++ Sbjct: 36 KAVRDIIKDLEKENKIRVSNKKRIMPLTDDEINLI-GKISMAQAGYGFFISDNRDFEDVF 94 Query: 110 LSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTSQIVGRYFTEAGVGFVVPD 168 + + M + D+V + + KGR+ E R++ ++ +IVG + G GFV+PD Sbjct: 95 IKRDNMNKAHNNDRVKIELIKRKEKGRKAEGRVIEIIERAKDEIVGSFQKNKGFGFVIPD 154 Query: 169 DSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 D DI I A+ VVVE+ P + K G+I E++G + + + Sbjct: 155 DRSYGEDIFIAEKFFNKAKNKDKVVVEIINYP-KDGKPEGRIKEIIGGKNDKNIEILSLI 213 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 R H +PY + + +++ +K+ V E GR DLRDL VTIDG D++DFDDA+ EK Sbjct: 214 RAHGLPYQFSKETKKESLYVKDTVNEIELEGRKDLRDLFTVTIDGRDSKDFDDAISIEK- 272 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 G + L+V IADV++YV+ T +D +A RG S Y + VIPMLPEVLSNG+CSLNP Sbjct: 273 NGENYDLYVHIADVAHYVKKGTAIDNDAYERGNSTYLFNIVIPMLPEVLSNGICSLNPNE 332 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKH- 406 DRL + +MT++ KG++ +FYE+V++S RL Y V L + D+++ E L+K Sbjct: 333 DRLAISLKMTINDKGKVIDNEFYESVINSDHRLVYDDVNAFLDKNDENVYED--ELIKEK 390 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 L L ++L+ RE+RG I F E++ + R+ I +R +K+IEE M+ A Sbjct: 391 LRIFDELREILNTMREKRGSIDFNFSESQIDVAEDGRVLNISNFERGSGNKMIEEFMLAA 450 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV 526 N + A P ++RIH+KP E I SF+ L +G + GN P+D+ ++LE V Sbjct: 451 NETVASLFAYMDFPFIYRIHEKPKEEKIESFKKALNTMGYNIR-GNDLHPKDFQQILEEV 509 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 + ++ ++LR+M++A Y HFGL+ Y HFTSPIRRYPDL +HR +K + Sbjct: 510 EGKDVESVINILMLRTMQKAKYSEHRDMHFGLSTSFYTHFTSPIRRYPDLIVHRLVKKFI 569 Query: 587 AKEQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN 645 + T S+E+ + H SM ERR+++ RDV D LKC +M +G+ Sbjct: 570 HNKLTSLNQT--------SLEKTITNNADHLSMTERRSEDCERDVEDLLKCKYMTRFIGD 621 Query: 646 VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR 705 F G IS++T FG F+ LD+ ++GL + ND Y + + + Y +GDR Sbjct: 622 EFYGNISAITEFGIFIELDNT-VEGLF-MYKFSNDRYEYLEDKMKAFNTDKKIFYSIGDR 679 Query: 706 VEVRVEAVNMDERKIDFSL 724 V++RV V+ +R IDF L Sbjct: 680 VKIRVMDVDTYQRNIDFDL 698 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 269/759 (35%), Positives = 399/759 (52%), Gaps = 39/759 (5%) Query: 44 LHIEGEEQLEGLRRRLRA--------MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDG 95 L I+ ++ GL RR++ + R G+++ R + L E+L LV GT+ R G Sbjct: 29 LKIDALMRMLGLHRRMKKELEDRLDDLVRQGRIIRLRGGAWGLVEQLRLVTGTLSIQRSG 88 Query: 96 YGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVG 154 GF+ E + +DD+Y+ QM HGD+V+ L E RIVRVL +I Sbjct: 89 MGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVVALLPGRHGKNPEGRIVRVLERGRKEIPA 148 Query: 155 RYFTEAGVGFVV--PDDSRLSFDILIPPDQIM-GARMGFVVVVELTQRPTRRTKAVGKIV 211 R G ++ P D R++ ++ + A G +VV ++ A + Sbjct: 149 RVVRRMGRHSLLCRPADPRMAVSFVVDMSAVEEKAEKGDLVVAAPGEKVEDGLWAATGLA 208 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 VLG + + + H++P +P V ++ L + GR+DLR L VTI Sbjct: 209 -VLGADDNVLVQERLVKINHDVPGDFPPEVLEEARDLPAVPGRDDMEGRIDLRHLEFVTI 267 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DG ARDFDDAVY E++ G G+RLWVAIADV++YVRP + +DREA+ R S YFP V P Sbjct: 268 DGAKARDFDDAVYVEEQ-GTGYRLWVAIADVAHYVRPGSAMDREAQARSNSYYFPQSVEP 326 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH-IL 390 MLPE LSNGLCSLNP+V RL MV E + G KFY A++ S ARLTY +V I+ Sbjct: 327 MLPEALSNGLCSLNPRVPRLAMVAETFFYADGTPGRSKFYAAIIESKARLTYGQVNRAII 386 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 + D+ R P++ LE L ++L+ R ERG + F+ E + IFN I + Sbjct: 387 EKDEKERRLLTPVLPLLERAEALARLLNAKRSERGSLDFDLPEPEVIFNIYGETVDIGRK 446 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL--EL 508 R+ H++IEE MI AN + ARF+ + L+R+H +P TE + VL L L Sbjct: 447 VRHFGHQIIEEFMIAANEAVARFLTEKNARFLYRVHPEPDTEKLEGLFKVLGRTSLAQHL 506 Query: 509 PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTS 568 PG K + +L++ ++ M LR+M QA Y P++ GHFGLA + Y HFTS Sbjct: 507 PG--KASAKALQGVLQAAKGSDQEFLVNRMALRTMMQARYAPDHEGHFGLASECYCHFTS 564 Query: 569 PIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATR 628 PIRRY DL +HRA++ L G +L + + ER A EA R Sbjct: 565 PIRRYADLVVHRALRRTLG---------LPVNGPLPGERALLTIADTLNTNERVAMEAER 615 Query: 629 DVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVG 688 ++ + F+ ++VG F GVIS + FGFFV +++ +G+V +SSLD+DYY + Sbjct: 616 EILKRITVLFLSERVGEEFTGVISGIIDFGFFVEFNEVMAEGMVRLSSLDDDYYGYLPER 675 Query: 689 QRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTA--REKAKKGD 746 Q L+GE +G+++RLG V VR+ VN+ +++ +L P V T +E+ ++ D Sbjct: 676 QELVGERTGRSFRLGQTVTVRLAEVNVARLEVNLALA----GPDAVASTGVRKERRERRD 731 Query: 747 AGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 G + G+ + G+ S GE+ +P+ +DAR Sbjct: 732 YGGRSGRDARGGRGARPGERS---GERSGRPEG--RDAR 765 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/701 (35%), Positives = 379/701 (54%), Gaps = 47/701 (6%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQ 114 L L ME++ + R + + +++G + +R G GF+ +E KD + + Sbjct: 40 LNHVLEKMEQEYFIFRNARNEFLTQSQAKVIEGRLSVNRMGVGFVDIED-KDSYRIEAPD 98 Query: 115 MKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL-- 172 + T ++GD VL Q L K A+++ + +VG FT+ ++ DD RL Sbjct: 99 LATAMNGDLVLIQAL----KILPFAKVIAIKERAKDTVVGTIFTKGKKVYLGLDDERLKE 154 Query: 173 -------SFDILIPPDQIMGARMGFVVVVELTQR--PTRRTKAVGKIVEVLGDNMGTGMA 223 S D L P D G VV +T+ P T +++V+G G Sbjct: 155 RKVRLSYSKDFL-PID-------GLKVVGHITRYGDPLDVT-----VLKVIGHKDDPGTD 201 Query: 224 VDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAV 283 + L HEIP +P+ V +++ + +EV GR DLR+ VTIDG+ ++DFDDAV Sbjct: 202 IASILVDHEIPLEFPEEVLEELKSISQEVHPSQFIGRKDLRNQIFVTIDGDSSKDFDDAV 261 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 EK G + LWV+IADVS YV+ +T LD+EA+ R S Y +V+PMLP LSNG+CS Sbjct: 262 SVEKDENG-YHLWVSIADVSSYVQENTALDQEAQQRSFSTYVVDRVVPMLPHELSNGICS 320 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 LNPQVDRL + CEM +S +G + Y Y +V+ S R+TY KV IL G++ + ++YA + Sbjct: 321 LNPQVDRLTLTCEMQISKQGEIVSYDVYPSVICSKRRMTYNKVNQILIGNESVIQEYADM 380 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 E L + + R ++G I+FE E + + I QR A ++IE+CM Sbjct: 381 GNFFEVLLDCADAIRHQRVDKGAINFEHPETGIDLDERGKPIHIYPKQRGVAEEIIEDCM 440 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG--LELPGGNKPEPRDYAE 521 I+AN+S A+++++ P ++R+H++PS + + +R + LG L N +P+D + Sbjct: 441 IVANVSVAKYLKEYGIPGIYRVHEEPSAKRLKEYRHLAEILGKPFTLKTSN-VQPKDVQQ 499 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 L S+ D A +L M+LR+M++A YD + GHFGLA Q Y HFTSPIRRYPDL +HR Sbjct: 500 FLTSIQDENSAPILNMMMLRTMQKARYDIRDIGHFGLAEQDYLHFTSPIRRYPDLIVHRM 559 Query: 582 I-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 + KY+ + Q + + + +H S+ ER +A D K ++M Sbjct: 560 LWKYMFGENQKKDKD--------WDNRRNREFAEHASIQERNCSDAEYACLDMKKAEYMQ 611 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 D +G F G+I+ VT FGFFV+L++ ++GLV S+ DYY F + L+G+ +G Y Sbjct: 612 DHLGEYFDGIITGVTHFGFFVQLENT-VEGLVQTRSIPGDYYLFHEDRSELVGKRNGVVY 670 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 R+G V+V+V A N + +DF L+ PR G+ R K Sbjct: 671 RVGQSVKVKVVAANKQKGNVDFELV----LPRQKGQDFRLK 707 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/692 (34%), Positives = 389/692 (56%), Gaps = 38/692 (5%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQ 114 L + L A+E +G L R + L +KGT + G+GF+ V + D+++ Sbjct: 41 LVKELAALEEEGILELNRNGKFGLNPLNQTLKGTYRANDKGFGFVTVVEGEPDIFIPRGD 100 Query: 115 MKTCIHGDQV---LAQPLGADRKGRREARIVRVLVPKTSQIVG---RYFTEAG-----VG 163 + + GD+V + +P + R+ +IV+++ T+Q+VG R+ +E G Sbjct: 101 TMSAMDGDEVELVITEPADSYRQRSATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCG 160 Query: 164 FVVPDDSRLSFD-ILIPPDQIMGARMGFVVVVELTQRPTRRTKAV--GKIVEVLGDNMGT 220 VV D +L+ LI P+ + G VV+VELT+ + ++ G +V+ +G Sbjct: 161 EVVVKDKKLAGTRCLIRPNGLHPVD-GTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAV 219 Query: 221 GMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFD 280 GM + + L+ IP +PQ V Q + E + +E + GR DLR VTIDG DA+D D Sbjct: 220 GMDILMVLQQLHIPTEFPQEVIDQANLVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLD 279 Query: 281 DAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNG 340 DAV K+ G + L V+IADVSYYV ++ +DREA RGTSVY +V+PMLP+ LSNG Sbjct: 280 DAVALTKREDGTFELTVSIADVSYYVTENSAIDREAFERGTSVYLTDRVVPMLPQRLSNG 339 Query: 341 LCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ-DLREQ 399 +CSL+P +RL M C M + G + Y+ + +V+ S RLTY+ V + + + +++++ Sbjct: 340 ICSLHPHEERLTMSCRMEIDRSGTIYQYEIFPSVIRSDMRLTYSLVNELYEKKEVEIQDE 399 Query: 400 YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLI 459 ++ ++ELH+ +L++ R+ERG I FE+ EAK I + + I+ +R A +LI Sbjct: 400 IQQMLLDMKELHH---ILERRRKERGAIDFETHEAKIIVDEQGAPIDIQIRERGVAERLI 456 Query: 460 EECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG-GNKPEPRD 518 E M+ AN + A ++ P ++R+H++P E + F + G+ + G + P+ Sbjct: 457 ESFMLAANETVAMHYQRKNVPFIYRVHEQPQQEKMQRFLEFVTAFGINIKGTSDTISPKK 516 Query: 519 YAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 + L+ V ++ TM+LRSMKQA YD GH+GLA + Y HFTSPIRRYPDL + Sbjct: 517 LQKALDEVKGETYEAVVSTMMLRSMKQAKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIV 576 Query: 579 HRAIKY------LLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVAD 632 HR I+ L+K+Q + ++ ++ S ER A +A R+V Sbjct: 577 HRMIRQYEGSGSFLSKQQE-----------ELNASKLERIADQSSKMERLAVQAEREVDA 625 Query: 633 WLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 K +FM D++G F+G++SSVT FG FV L + ++GLVH++ ++ DY+ F + L+ Sbjct: 626 MKKAEFMADKIGQEFEGIVSSVTKFGMFVELPNT-VEGLVHITHMNQDYFNFIESHLVLI 684 Query: 693 GESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 GE +G TYR+GD V+V++ V+++ +IDF L Sbjct: 685 GERTGVTYRIGDCVKVKLIKVDVEAHEIDFIL 716 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 284/815 (34%), Positives = 409/815 (50%), Gaps = 50/815 (6%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P PSRE +LE + R E+A HI G E+ + LR L+ +E +G L R + Sbjct: 55 PFPSREQVLEFIRAANGEVDRREIARAFHITGPERAD-LRTLLKELESEGALQRGRGRRI 113 Query: 77 ALPERLDLVKGTVIGHRDGYG--FLRVEGRKDD-----LYLSSEQMKT--------CIHG 121 A P L V ++ D G F + E +D + L E G Sbjct: 114 APPGSLPEVAVLIVARADAEGDLFCKPEHWPEDEEPPRILLWPEPHHARRPGVGAEIGVG 173 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ L R +AR +R L S+++G + P + R + L+ P+ Sbjct: 174 DRILAR-LTRIGDARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPE 232 Query: 182 QIMGARMGFVVVVELTQRPTRRTKA-VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 GA G +V EL P+RR K++E LG G + + +H+IP +P Sbjct: 233 DAGGAEPGELVEAELL--PSRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFPPE 290 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGWRLW 296 + + V + + GR DLR +PLVTIDGEDARDFDDAV+ E GGWR Sbjct: 291 ALAEA---EAAVGVDLR-GREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRAL 346 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADV++YVR LD+ AR RG SVYFP +V+PMLPE LSNG CSL P DR C+ Sbjct: 347 VAIADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVW 406 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYK 415 M ++G ++F +M S ARLTYT+V G D + APL + + L+ +++ Sbjct: 407 MIFDAEGNKLRHRFLRGLMRSAARLTYTQVQAARDGHAD--DLTAPLQERVIAPLYGVFQ 464 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L AR RG + + E K + + + RIE R D+HKLIEE MI AN+SAA +E Sbjct: 465 ALLGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLE 524 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 + + P ++R+HD+P+ + + + L L + G+ + +L++ P M+ Sbjct: 525 EKRRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMV 584 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 ++LRS QA Y P+N GHFGLAL+ YAHFTSPIRRY DL +HRA+ L Sbjct: 585 NEVVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGL--------G 636 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + G + E+ ++ H + ERRA +A RD + F+ +VG F G I+ VT Sbjct: 637 LGDDGLRPGAEEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVGATFAGRINGVT 696 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G FV L+D DGL+ + SL NDYY D L G+ G + LG VEV + N Sbjct: 697 RAGLFVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANP 756 Query: 716 DERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK-- 773 + F L+ G A +G +GK G R +GK E +A + +K Sbjct: 757 VSGGLVFGLLQ--------GGVAGAAKGRGFSGKTKG-RDGLGKTRLKERGAAAKLKKGA 807 Query: 774 KTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAK 808 + KPKAA +DA + + +K T ++R + Sbjct: 808 RGKPKAAGRDALAGEPVGSGPKKRPPTTTSRRKTR 842 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/729 (34%), Positives = 391/729 (53%), Gaps = 39/729 (5%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLR---RRLRAMERDGQLVFTRRQC 75 P+RE ++ L K +P +L + ++L G R L + R G+++ TRR+ Sbjct: 252 PARELVIAQLRKLGRPIHVRDLERTFTRQMLDRLGGWRDLEALLDDLTRTGEVIRTRRRT 311 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG----- 130 Y LPE + LV+G G+GF+ + +D Y++ E +GD VL + G Sbjct: 312 YGLPEAMSLVRGRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDTVLVRMEGRGDSG 371 Query: 131 ---ADRKGRR-----EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 R+G+R A + R++ +VG G + DD R IL+ P+ Sbjct: 372 RSPGPRRGQRGDGSPRASVARIVQRAYRHLVGTLEFSKGHPILKADDPRARHRILLLPEG 431 Query: 183 IMGARMGFVVVVELT-QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + G G VV EL T + G+++ VLG+ + + + + +P V Sbjct: 432 LEGLASGARVVAELYWPEQTGEDEVFGQVIRVLGEQDDPATETEAVIVKYGLRGEFPADV 491 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 ++ + +P E+ GR+DLR+ + T+DG DA+DFDDA++ + G + + V IAD Sbjct: 492 LEEANAIPTRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIAD 551 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVR TPLD+EA R TSVY P +V+PMLPE LSNG+CSL P DRL + + +S+ Sbjct: 552 VSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPFEDRLTVTALIELSA 611 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLE-ELHNLYKVLDKA 420 +G + K +V++S ARLTY +V + L E +HLE +LH L K+ K Sbjct: 612 EGDILDVKLAPSVINSKARLTYDEVQAYSEATSTLPEH----ARHLEGDLHLLLKITSKL 667 Query: 421 REER---GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 R++R G + F+ E K + R+E I A +IE+ M+LAN A ++ + Sbjct: 668 RQKRLREGSLDFKLREVKVDVGPDGRMELIP-IHEETARGMIEDLMLLANKVVAHYLIER 726 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 P LFRIH++P+ + + +A LGL PGG +P P+ Y +L++V P ++ T Sbjct: 727 GIPTLFRIHEEPTLQRFQEATAAIARLGLAFPGG-EPTPQAYQAVLKAVRGTPRESVVNT 785 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 +LLRS++QA Y EN GHFGLA Y HFTSPIRRYPDL +HR +K +L+ + Sbjct: 786 LLLRSLQQAKYAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVLSGDL------- 838 Query: 598 ETGGYHYSME---EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 G E ++ +G H S ER+A EA RD+ + + + + +G F G ++ V Sbjct: 839 -KAGSRAVAELRSQLPAMGDHTSERERKAAEAERDLTKYYQAKWAQEHLGERFSGNVTGV 897 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 G FV LD+ ++G +H+S+LD+DYY + + Q L G S G+T+RLGD + V + VN Sbjct: 898 VSSGLFVALDN-GVEGKLHISNLDDDYYIYLEDAQMLRGRSGGRTFRLGDPITVTISQVN 956 Query: 715 MDERKIDFS 723 R+IDF+ Sbjct: 957 PLARQIDFT 965 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/714 (34%), Positives = 398/714 (55%), Gaps = 35/714 (4%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---- 79 I++ L ++KP ++ +++ +E + +RR LR ++++ ++V + Y L Sbjct: 8 IVDFLKNQKKPVYLKQILKAFNLDKKEDKKLVRRLLRKLQKN-KIVLYKNGGYILKREIQ 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 E+ +L+KG V H G+GFL E + DL++ +MK GD VLA+ +G++EA Sbjct: 67 EKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAEE--KIYRGKKEA 124 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +IV+VL + VG+ E FV D + I + + + VVVE+ + Sbjct: 125 KIVKVLERRVKTAVGKLKQEGNRYFVYLLDFVIPHKIYVDKKEAKKYELDNYVVVEILRY 184 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW-PQAVEQQVAGLKEEVPEEAKA 258 P + +A G+I++ LG T +I R +++P P+A+++ E++P K Sbjct: 185 PEPKVEAKGRIIKDLGKVKNTQTVAEIVARKYDLPLTHSPEALKEA-----EKLPSVVKI 239 Query: 259 --GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R DL TID E ARD DDAV EK+ G +RL+V IADVS+YV+ + +D+EA Sbjct: 240 TKNRKDLTKQICFTIDPESARDHDDAVAIEKE-GDKYRLYVHIADVSHYVKEGSVIDKEA 298 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG + Y P + + MLPE L++ LCSL P+ R CEM + KG + Y YE+V+ Sbjct: 299 FQRGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIE 358 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S A+LTY + I+ G +L + + LVK L+ + L ++L KA+E+RG I F+ E++ Sbjct: 359 SKAKLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQI 418 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 +F+ + +R+ A+++IEE MI+AN + A+ +EK P ++R+H+KP E + + Sbjct: 419 LFDQYGNPYDVVPYERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKLEKVMA 478 Query: 497 FRSVLAELGLELPGGNKPEPRDYAE-LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 F ++A LG ++ K + + ++E P+ +++ + LR+MKQA Y PEN GH Sbjct: 479 FVDLIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSPENIGH 538 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ---- 611 FGLA + Y HFTSPIRRY D+ +HR LL K + + MEE+ + Sbjct: 539 FGLASECYTHFTSPIRRYADVWVHR----LLKKAIKKKFTKKD-------MEELPKKLDI 587 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 + + CS ER AD+A RD D LK + D+VG F+G+I+ V G F+ ++ I+GL Sbjct: 588 IAKQCSERERVADDAERDALDILKLRILKDKVGEKFEGIITGVMAVGLFIEIERYIIEGL 647 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 V + SL +++D+ +L+G+ +RLGD+V V + V+ D ++ID L+ Sbjct: 648 VPIDSLPGK-FKYDEKNHQLIGDK--MKFRLGDKVLVEIVKVDEDTKRIDLKLV 698 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 266/741 (35%), Positives = 392/741 (52%), Gaps = 50/741 (6%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P ELA+ L I + Q + L + L + +G++ +++ Y PE V G GH Sbjct: 24 PMKAKELAMLLGIP-KSQRDELTQVLDYLVSEGRIGISKKGKYGKPEVFS-VNGIFCGHP 81 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--RREARIVRVLVPKTSQ 151 G+GF+ VEG + D+++ ++ +HGD+V DR G R E +++VL + Sbjct: 82 KGFGFVTVEGMEQDVFIPEDRTGAALHGDRVQIVVESQDRGGGRRAEGSVLKVLEHANKE 141 Query: 152 IVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 +VG Y G GFV+PD+ ++S DI IP MGA G VV + + K G + Sbjct: 142 VVGYYQKSKGFGFVIPDNQKISKDIFIPQGCDMGAVTGHKVVARIKEFGDANHKPEGVVT 201 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP-------EEAK------- 257 E+LG G + +R + +P +P V +V G +EV EE Sbjct: 202 EILGHVNDPGTDILSIVRAYGLPEEFPPEVMDEVEGCPDEVAVPGMTRDEETWDGPYGIG 261 Query: 258 ------------AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYY 305 AGR+DLR L VTIDGEDA+D DDAV + GG+ L V IADVS+Y Sbjct: 262 DLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTLCRNGQGGYILGVHIADVSHY 321 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V+ PLD+EA RGTSVY +VIPMLP LSNG+CSLN DRL + C M + +G + Sbjct: 322 VKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMELDDQGNV 381 Query: 366 TGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 +K E V+ R+TYT V I+ GD+ + +Y V + + +L + R++R Sbjct: 382 LDHKIAETVIHVDRRMTYTAVNAIVTDGDEAVMAEYEGFVPMFMLMKEVSDILREKRKKR 441 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G I F+ E+K I +A+ + I+ +RN A K+IE+ M+ AN + A P L+R Sbjct: 442 GAIDFDFPESKIILDAQGKPLEIKPYERNAATKIIEDFMLAANETVAEDYFWQSLPFLYR 501 Query: 485 IHDKPSTEAITSFRSVLAELG--LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 HD P E + + + G + L G + P++ +LL+ + P+ +L + LRS Sbjct: 502 THDNPDPEKMKQLGTFIHNFGYFIRLQQG-EIHPKELQKLLDKIEGTPEEVLLSRLTLRS 560 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 MKQA Y GHFGLA + Y HFTSPIRRYPDL +HR IK L +G + Sbjct: 561 MKQAKYTTLCSGHFGLAARYYTHFTSPIRRYPDLQIHRIIKESL------KGGLGDKRAG 614 Query: 603 HYSMEEMLQ-LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 HY E +L + S ERRA+EA R+ KC++M +G F GV+S VT +G +V Sbjct: 615 HY--EAILPGVAMQTSALERRAEEAERETDKLKKCEYMSRFIGQEFDGVVSGVTNWGLYV 672 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L + ++GLV +S L +DYY FD+ L+GE + +T++LG + V+V + + R +D Sbjct: 673 ELPNT-VEGLVRISELRDDYYIFDEQHYELVGEMTRKTFKLGQPIRVQVASTDRLLRTVD 731 Query: 722 FSLISSERAPRNVGKTAREKA 742 F L PR+ ++A + A Sbjct: 732 FIL------PRDWDRSAGKGA 746 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 370/698 (53%), Gaps = 27/698 (3%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P +++ELAV L+I L+ + L ++ ++ F + Y++ ++ + +KG + Sbjct: 18 PLTKEELAVALNISFN-SLKQFFKLLDSLVNSKKVSFNDYK-YSIYQKKETLKGKISFTT 75 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLVPKTSQI 152 G F E DD+++ +++ H D V + + R + E R+++VL ++ I Sbjct: 76 KGNAFFISEEDIDDIFIPKKELNHANHNDDVEIEIIKEKRMNSKAEGRVLKVLNRNSNLI 135 Query: 153 VGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVE 212 VG + GFVVPDD + ++DI I A+ VV +L + P ++ G ++E Sbjct: 136 VGTFTENKNFGFVVPDDIKCNYDIFIKKGDKNSAKTDDKVVCKLVEFPDKKKNPEGVVIE 195 Query: 213 VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 V+G+ + L+ EIPY + + +++ L + ++ RVD R+L VTID Sbjct: 196 VIGNKKDKNAQIISLLKDMEIPYKFSNKINKELEELTQTDIKKEIKNRVDFRNLFTVTID 255 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 G DA+DFDDA+ +KK + L+V IADVS+YV+ + LDREA RG SVY V+PM Sbjct: 256 GADAKDFDDAISIDKK-DNDYVLYVHIADVSHYVKKDSKLDREAYKRGNSVYLIDYVVPM 314 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG 392 LPEVLSN LCSLNP D+L + +M + G + YKFYE+V++S+ RL Y V + L+G Sbjct: 315 LPEVLSNNLCSLNPNTDKLSITVKMIIGKNGNVKEYKFYESVINSNYRLVYDDVTNFLEG 374 Query: 393 ------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 D+ L+E ++K L+E +L R RG I F E F + ++E Sbjct: 375 KKHFYDDETLKENLL-VMKELDE------ILTNKRINRGTIDFNFPEIAITFGKDGKVEN 427 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 I + + A+++IE MI AN + + P ++RIH KP + + ++ L+ L + Sbjct: 428 IAKKENGLANRIIESFMICANEVVGKHFGELDIPIIYRIHSKPPEDKLEILKNNLSRLNI 487 Query: 507 ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 ++ + + +E+++ D ++ + +LRSM +A Y P HFGLA Y HF Sbjct: 488 KMKPIDMISSKYLSEIIDQFKDTNKSDFINYSILRSMTKAKYSPNIDIHFGLATFLYCHF 547 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRY DLT+HR +K L N Y + + H + E A +A Sbjct: 548 TSPIRRYADLTVHRTLKNYL------HSNIEIPKNY---ISYLDITSNHINDTEVLAIDA 598 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R + D K +FM +++G VFKG+I SVT FG FV+L++ ++GLV + +DYY FD+ Sbjct: 599 ERKLEDIKKVEFMKNKIGQVFKGIIVSVTSFGLFVQLENT-VEGLVKYEDIMDDYYEFDE 657 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +G + + +G VEV V VN +I+F L Sbjct: 658 QTLTAIGRRTKNVFDIGMGVEVIVAKVNEITNEINFYL 695 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 259/774 (33%), Positives = 415/774 (53%), Gaps = 51/774 (6%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 P ++F ++ + E+ A RD L L + L +E++ Q++ Y L Sbjct: 19 PQKQFSVDQI---ERQARRDRLG---------NFTDLVKALAYLEQEKQIITDGNGRYQL 66 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPL--GADRKG 135 + V+G + G+GF+R++ + DD++++S+ K + GD+V + G G Sbjct: 67 AKENTEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAGGNPWNG 126 Query: 136 R-REARIVRVLVPKTSQIVGRYF--------TEAGVGFVVPDDSRLS-FDILIPPDQIMG 185 + E ++ +L S IVG Y G+V+P + + + + + + ++ Sbjct: 127 KGPEGQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKKYRVYVSENGLI- 185 Query: 186 ARMGFVVVVELTQRPTRR--TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 +MG +V V L PT + G +VE++G+ G+ + + H+I WP+ + Sbjct: 186 PQMGDMVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWPEDALE 245 Query: 244 QVAGLKEEVPEEAK--AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q + + V EE + AGR D+ D P VTIDG+D++DFDDAV K G + L V IAD Sbjct: 246 QANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNGNYHLGVHIAD 305 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 V++YV+ TPLDREA RG S Y +VIPMLP LSNG+CSLN VDRL + C+M ++ Sbjct: 306 VAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDMEITP 365 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGD---QDLREQYAPLVKHLEELHNLYKVLD 418 +G Y Y A+M SH RLTY KV L+ D DL ++Y + L+++ L++VL Sbjct: 366 EGERVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLKDMAALHEVLY 425 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K R RG I FE EAK I + + + I R A K+IE M+LAN + A + K Sbjct: 426 KKRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANETVAEAYYRKK 485 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQT 537 P L+R+H+ P + I+ F + GL + N +P D +++ + ++Q Sbjct: 486 VPFLYRVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTLGTSEESVVQM 545 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 M+LRS+KQA Y + GHFG+A + Y HFTSPIRRY D +HR I L E+G + Sbjct: 546 MMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMIHAYL--EEGMGDDVK 603 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 E H+ EE+ + SM ERR+ + R D ++M DQVGN F+ V+SSVT F Sbjct: 604 E----HFK-EELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGNKFEAVVSSVTSF 658 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 G FV+L++ ++GL+H+S+L +DYY +D+ L G ++ + Y++G ++V + N+++ Sbjct: 659 GMFVQLENT-VEGLIHISNLKDDYYSYDEKSMTLTGRTTHKKYKVGMPIKVVLTNANVEQ 717 Query: 718 RKIDFSLI--SSERAPRN---VGKTAREKAKKGDAG----KKGGKRRQVGKKVN 762 ++D + +++ P N +G+ + ++ KG + K G RR + N Sbjct: 718 HQLDIEVYDPDAKKRPHNDRGMGRRSGDRNFKGRSNYGGRDKSGDRRHKPSRNN 771 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 231/652 (35%), Positives = 356/652 (54%), Gaps = 19/652 (2%) Query: 96 YGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ-PLGADRKGRREARIVRVLVPKTSQIVG 154 +GFL + +D+Y++ ++ D V + G + E ++R++ + V Sbjct: 26 FGFLITDEEHEDVYIADRDHLNAVNNDIVEVRIKKGETGRHNTEGEVLRIIERAENTFVC 85 Query: 155 RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVL 214 Y + G +P D ++ I IP + + A G V+VE+T+ P R A GK+ E++ Sbjct: 86 TYEMTSFGGKAIPIDEKIDMVIEIPRGEELEAVTGARVIVEVTRWPGARANAEGKVTELI 145 Query: 215 GDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGE 274 G G+ +DI + H +P+++ +A+ + L +E+ +E G D R LP+VTIDG Sbjct: 146 GYKGDKGIDIDIIIAQHRLPHVFSKALMAEADALSKEMKQEK--GVEDFRSLPIVTIDGP 203 Query: 275 DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLP 334 DA+D DDAVYC KK G ++L V IADVS YVR + +D EA RGTSVY +VIPMLP Sbjct: 204 DAKDLDDAVYCVKKENGHYQLGVHIADVSRYVRKGSLIDDEAYRRGTSVYLADRVIPMLP 263 Query: 335 EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ--- 391 LSN LCSLN DR M C M V+ G++ K +++ R Y ++ + Sbjct: 264 FQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVAAEKITPSMVRVARRCNYPEINQAFETGV 323 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 DL+ Y P++++L+ + +L K RE RG + F+ E K I + E RIE+ Sbjct: 324 ASDDLK-PYLPMLRNLKACAD---ILRKNRENRGALEFDFPEYKVILDEEGTPLRIEKRN 379 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 R DA K+IE+ MI AN + ARF+E +++RIHD P + S + ++A G+ Sbjct: 380 RGDAEKMIEDAMIAANETVARFLEATGHTSVYRIHDHPDGNKLLSLKKMMAIFGMAEKLP 439 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 +PEP+D L+ES+ + ++Q M LRS+ QA Y EN+GHFG+A Y HFTSPIR Sbjct: 440 KEPEPKDMQRLMESMKGKESEAVVQVMTLRSLPQACYSTENKGHFGIASTCYTHFTSPIR 499 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 RYPDL +HR I+ L N E +L+ +HCS E+ A E RD Sbjct: 500 RYPDLMVHRLIRQALR-------NRLNKSQLKKQTEFLLRAVEHCSETEQNAVETERDTT 552 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 D ++M+ VG F I+ +T FG FV LD+ ++GLVH+ S+D+D Y + + + Sbjct: 553 DLKMTEYMIPFVGEPFDAHITGLTRFGIFVGLDN-GVEGLVHIDSMDDDEYVYQEDTMTV 611 Query: 692 MGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAK 743 G G+ Y +G V V + + ++R++DF ++ R+P N+ K R+ ++ Sbjct: 612 KGLRGGKKYTMGMPVRVTLVKADKEKRELDF-IMGEIRSPLNLEKRVRKGSR 662 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/644 (36%), Positives = 343/644 (53%), Gaps = 23/644 (3%) Query: 87 GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV 146 G V H DG+GF+ VEGR+ +L E+M +HGD V +P+ ++GR A +VR++ Sbjct: 76 GKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVRPV--RKRGRESAEVVRIVE 133 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++ +VG+Y + + V P + ILI A G V +E+ +R + Sbjct: 134 HASTVLVGQYLVQGKIAVVQPRSRNMPQAILIAHGDAGTASDGDWVRIEI-KRDAGHVR- 191 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 GK+ EVLGDN+ +D+ + ++ +P AV + ++V E GR DLR + Sbjct: 192 -GKVQEVLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFADQVLESDIKGRKDLRHI 250 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 P VTIDGEDARDFDDAV C RG G+ WV+IADVS+YVRP + LD+EA R S YFP Sbjct: 251 PFVTIDGEDARDFDDAV-CVLPRGEGFEAWVSIADVSHYVRPHSALDKEALARSNSFYFP 309 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 +VIPMLPE LSNGLCSLNP + RL M M + G YE+V+ S ARLTYT+ Sbjct: 310 DRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGTRRSIHVYESVIHSQARLTYTQA 369 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 L+ + + L + L++ L++ L+K R++RG + + E + + + ++ Sbjct: 370 SAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLDMPEVRALLQDDVVVD- 428 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 I ++RN A +LIEE M+ AN + A +++ + L+RIH P +AI + LA GL Sbjct: 429 IVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAPERQAIETLNEFLAPFGL 488 Query: 507 --ELP----GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 +LP ++ P D +LE +P A +L ++LRSM+QA Y P N GHFGLA Sbjct: 489 FVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSMQQAKYTPVNVGHFGLAY 548 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 SYAHFTSPIRRY DL +HR +K L+ +G N + G + +G S E Sbjct: 549 DSYAHFTSPIRRYADLIVHRRLKALI---RGEDPNRVQPVG------TLADIGLQTSTQE 599 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R+ D L F VG IS +T F ++ + + V L Sbjct: 600 RKQQRGEWDTQAMLAALFHSKDVGKTMPARISGLTKRRIFFEIEPTMAEAGLAVDDLPG- 658 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + D+ G RL G Y LGDR++V +++ + +I+ L Sbjct: 659 AFELDETGHRLAARRGGSAYHLGDRLDVVIDSTDPVRGQINVRL 702 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/627 (36%), Positives = 329/627 (52%), Gaps = 23/627 (3%) Query: 95 GYGFL-----RVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVP 147 G+GFL +E + D Y+S M +HGD+VLA + GR EA I V+ Sbjct: 99 GFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGDKVLAYIFRTTQNGRSEAEIFHVIKR 158 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 ++I G + G VVP+D RL F + + + M R G V+V L Q T Sbjct: 159 GLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPEDMSVRHGDGVIVTLKQTATPDKVRQ 218 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267 G ++E G + + +P + + A L++ E+ RVDLRD+ Sbjct: 219 GMLLESFGSPDSVKSQIRFVVEKSVLPDKFSG---ETYAELEQMGGEDHDPKRVDLRDIK 275 Query: 268 LVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS 327 VTIDG+ A+DFDDAV C +KRG +RL+VAIADVS++V+ + LDR+A RGTSVYFP Sbjct: 276 FVTIDGDTAKDFDDAV-CVEKRGVNFRLYVAIADVSHFVKVGSALDRDAYERGTSVYFPG 334 Query: 328 QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW 387 VIPMLPE LSN LCSL P DRL + + + G+L F +++ S R TYT+V Sbjct: 335 TVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRAGKLQKKSFCRSLIRSQHRFTYTRVQ 394 Query: 388 HILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERI 447 IL + + L+E L ++L + R RG + F E+ + ++E +E + Sbjct: 395 EILDTPGSVSADEKAFLSMLQEAEKLARILKEKRAIRGALGFTMPESIILLDSEGEVENV 454 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 +++ + + K+IEE M+ AN + A F + AL+RIH+KP + + F + LG++ Sbjct: 455 ARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSALYRIHEKPDVDRVKEFATYAHNLGMQ 514 Query: 508 LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFT 567 LP + P + ++E ++ +LLRSMKQA Y +N GHFGLA Y HFT Sbjct: 515 LPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLRSMKQAKYSADNVGHFGLAATDYTHFT 573 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEAT 627 SPIRRYPDL +HR + L+ N + Q G S ER A +A Sbjct: 574 SPIRRYPDLMVHRELCRLVGYLPAETKNRSAQ-----------QAGDFLSGRERVATKAE 622 Query: 628 RDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQV 687 R++ D LKC FM +G FK +IS VT GFFV L D I + L D Y FD Sbjct: 623 RELGDRLKCIFMERYIGETFKAIISGVTDTGFFVELKDFPISASAPIEELVEDMYLFDYR 682 Query: 688 GQRLMGESSGQTYRLGDRVEVRVEAVN 714 G L+G++ G + LGD VEV V+ ++ Sbjct: 683 GHNLIGQNKGAFFSLGDSVEVTVQRID 709 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/727 (33%), Positives = 373/727 (51%), Gaps = 38/727 (5%) Query: 31 REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL---DLVKG 87 R+ P S EL +LH+ ++ + L+ L + R+G L + Y+ LV G Sbjct: 31 RKNPFSYKELIKKLHLVRDKDKKALKDVLEDLVREGILAKDKSGLYSNAGSSGGESLVTG 90 Query: 88 TVIGHRDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQV---LAQPLGADRKGRR--EAR 140 V + ++ EG K +D+++SS +M + GD V + + G KG + E Sbjct: 91 RVDFVNARFAYVIPEGEKADNDIWISSNKMSGALDGDIVRVAVYKKSGGGNKGTKSAEGE 150 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 IV ++ K + VGR A FVVPD ++ DI IP + I GA+ G V+V++T P Sbjct: 151 IVEIVERKRTSFVGRIEVSARHAFVVPDGRKMHVDIFIPKEHINGAKTGEKVLVDITAWP 210 Query: 201 TRRTKA-VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 TR K+ GK+ EVLG + L +PY +P V + + E E Sbjct: 211 TRDEKSPTGKVTEVLGMAGENETEMHAILAEFGLPYEFPNQVIKAAQDITAETSEAEIKK 270 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D+R TID EDA+DFDDA+ + G W + V IADVS+YV+P LD+EA R Sbjct: 271 RRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGDTLDKEAYRR 330 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY + +PMLPE LSN LCSL P D+L + + ++ F ++ S Sbjct: 331 ATSVYLVDRCVPMLPERLSNELCSLRPNEDKLTFSAIFEIDADAKVLDEWFGRTIIHSTR 390 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R +Y + +++ Q LVK L L+ L K + R + G ISFE+ E KF + Sbjct: 391 RFSYEQAQEVIETQQ------GDLVKELTILNTLAKKMRAQRFKEGAISFETVEVKFQLD 444 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFV------EKAKEPALFRIHDKPSTEA 493 A+ + + R DAHKLIEE M+LAN A FV + ++R HD P+ E Sbjct: 445 AKGKPLAVVPKVRKDAHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYRTHDAPNPEK 504 Query: 494 ITSFRSVLAELG--LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + S + G +EL N ++ +L + V +P+ +LQ++ +R+M +AIY E Sbjct: 505 LASLATFAKRFGHKVELDDENAI-AKNLNKLSDEVEGKPEQNVLQSLAIRTMSKAIYSIE 563 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 HFGLA + Y+HFTSPIRRYPD+ HR +++ L GG E ++ Sbjct: 564 PDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQHYL------------DGGKSADKEYYIE 611 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +H S E+ A EA R + + +FM +G F+G++S VT FG FV + + +G+ Sbjct: 612 ACEHSSAQEKLAAEAERSSIKFKQVEFMQSSIGKEFEGIVSGVTEFGMFVEIVETKCEGM 671 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 V ++ +D+D+Y D R++G+ + + LGD V+V V++ N++ R ID L+ + Sbjct: 672 VRLADMDDDFYEVDTDNYRIVGKRNKRMITLGDSVQVIVKSTNLERRTIDLELVKNSDGN 731 Query: 732 RNVGKTA 738 R+V + A Sbjct: 732 RDVNRDA 738 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/649 (38%), Positives = 354/649 (54%), Gaps = 25/649 (3%) Query: 85 VKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVL---AQPLGADRKGRREAR 140 V+G + H GYGF+ +EG++D D+Y+S M T + GD+VL A P DR RRE Sbjct: 92 VEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALDGDRVLVGLAAPARGDR--RREGE 149 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +++VL + Q VG ++ FVVPDD RL+ DI +P + GAR G VVV + + Sbjct: 150 VLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYVPREAFNGARAGDKVVVSIDRFD 209 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 + G+++EVLG + V + ++ +P+A ++ + + +PE R Sbjct: 210 DPKASPEGRVLEVLGPASDPRVQVLALALSKDVRTGFPEAALKEAERIPDTIPEREYRRR 269 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +DLRD + TID DA+DFDDA++ + G + V IADVSYYVRP + LD EA RG Sbjct: 270 LDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAYQRG 329 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY +VIPMLPE LSN +CSL P D+L M ++ R+ Y+ E V+ S R Sbjct: 330 TSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHSRQR 389 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 TY + I+ G PL + + H L + L KAR E G I F+ E K + Sbjct: 390 FTYEEAQAIIDGADH------PLAEPVRLAHELAQKLRKARMEAGAIDFDLPEVKVELDE 443 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE--PALFRIHDKPSTEAITSFR 498 RI + +R AH+LIEE M+LAN A + K E P ++RIHD+P E I Sbjct: 444 AGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPDAEKIRQLA 503 Query: 499 SVLAELG--LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G LEL + ELL+ V P+ +++ LR+M +A Y +N GH+ Sbjct: 504 QYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQNIGHY 563 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA Y HFTSPIRRYPDL +HR +K L K + + + +E+ +HC Sbjct: 564 GLAFDFYTHFTSPIRRYPDLMVHRLLKQYLKKAE--KAPVVDA-------DELEARCRHC 614 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A+EA RD + + +M VG F+GV+SSVT FG FV L+D+ ++GLVHV Sbjct: 615 SERERAAEEAERDSVRFKQVQYMQQHVGERFRGVVSSVTNFGVFVELEDVLVEGLVHVRD 674 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + +DYY +D+ L G SG+ YR GD VEV V + R+ID + Sbjct: 675 MGDDYYEYDERRYTLRGMYSGKRYRPGDVVEVVVVRADPATRQIDLRFV 723 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 245/664 (36%), Positives = 358/664 (53%), Gaps = 27/664 (4%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLR-VEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 RR ++ E L++G + HRDG+GF+ + G D+++L + + + D+V+ G Sbjct: 156 RRGRFSEVEEDGLLEGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAVSG 215 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 R R E RIVRV+ + VG Y + V P DS L I +P Q+ AR G Sbjct: 216 --RPPRLEGRIVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVPLTQM--AREGD 271 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGD--NMGT------GMAVDIALRTHEIPYIWPQAVE 242 +V V+L G EV G GT G+A P + +A Sbjct: 272 LVKVQLGIGAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADR 331 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 V +EEV E R DLR +PL+TIDGEDARDFDDAV C + R GWRL VAIADV Sbjct: 332 YAVTVTEEEVRGEH---RRDLRAIPLITIDGEDARDFDDAV-CVEDRADGWRLVVAIADV 387 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 ++YV + L+ EA R TSVY P +V+PMLPE LSNG+CSL P DRLCMV +MT + Sbjct: 388 THYVWEGSALNAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRR 447 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G Y Y AVM S AR TY +V +L G D R + P H E L +L + L K R Sbjct: 448 GHRRSYDLYPAVMRSVARCTYNEVQDVLDGKDVPHRNAHKP---HFERLMSLARALMKMR 504 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +ERG I F+ E K + + + R+++ +R D+H+LIEECM+ AN + A F + P Sbjct: 505 KERGAIDFDLPEHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPT 564 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 ++R H +P E + +F ++ G ++ + ++ + + P+ L +LLR Sbjct: 565 VYRFHGEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQLLLR 624 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM QA+Y GH+GLA + Y HFTSPIRRYPDL +HR +K A+ +G Sbjct: 625 SMMQAVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWAR----KGRKPSQSM 680 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 +++ + CS ER A + R+V + C M D+VG F ++++T FGFFV Sbjct: 681 LEREEDQLEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEEFAATVAAITDFGFFV 740 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 LD++ ++GLV +L + D++ L+ ++G+ R+G ++ VR+ +VN+ +KID Sbjct: 741 ELDEVHVEGLVKAETL-GPGAKLDKLTHSLV-YANGRRVRVGQKLRVRLTSVNVTAKKID 798 Query: 722 FSLI 725 F + Sbjct: 799 FEAL 802 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/637 (33%), Positives = 367/637 (57%), Gaps = 23/637 (3%) Query: 95 GYGFLRVEGRKD--DLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTSQ 151 GYGF + KD D+++S+ + T + D+V + + G+ E ++V ++ +++ Sbjct: 79 GYGFF-ISDNKDFKDVFISANNLNTANNLDRVRIKIIKNKEFGKNAEGKVVEIIERNSNK 137 Query: 152 IVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 IVG Y G GFV+ D + ++ DI + A+ V+VE+ P ++ GK++ Sbjct: 138 IVGLYQKNKGFGFVISDSNNITSDIYVDEKNSKKAKSNDKVLVEIINYP-KKGSPEGKVI 196 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 EVLG+ + + +++H + + + V+++ ++++V R DLRDL VTI Sbjct: 197 EVLGNKDEANVDLISIVKSHGLKENFSKKVKKEAVFIEKDVDLSKVKNREDLRDLFTVTI 256 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DG D++DFDDA+ EK + L+V IADVS+YV+ + +D+EA RG S Y + V+P Sbjct: 257 DGRDSKDFDDAISIEKD-NEDYILYVHIADVSHYVKEKSEIDKEAYQRGNSTYLYNLVLP 315 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLPE LSNG+CSLNP +RL + +M ++ KG++ YK Y+A++ S+ RL Y V L Sbjct: 316 MLPEELSNGICSLNPNENRLSLSLKMKINDKGKVIDYKIYKALIRSNYRLVYDDVNDYLD 375 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 ++ + + L++ L+ ++LYK+L K RE+RG I F E++ + + + I + Sbjct: 376 YNKKVYDD-EVLLEKLDLFNDLYKILKKKREKRGSIDFNFTESQIDVSNQGDVLNISLFE 434 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 R A+K+IEE M+++N + A P+++RIH+KP E + SF+++L LG + G Sbjct: 435 RGSANKMIEEFMLVSNETIASLFAFMDFPSIYRIHEKPKEEKVESFKNILNTLGYNIKGK 494 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 + P+D+ ++L+ + + D ++ ++LR+M++A Y HFGLA + Y HFT+PIR Sbjct: 495 -ELHPKDFQDILKQIKGKDDESLINMLMLRTMRKAKYTNYRDMHFGLATKYYTHFTAPIR 553 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDV 630 RYPDL +HR +K + + T S+E+ L + +H S+ ER +++ RDV Sbjct: 554 RYPDLIVHRLVKDFIDNKLESINQT--------SLEKKLSKFAEHLSITERNSEDCERDV 605 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 D KC +M +G F+G+ISS+T FG FV L++ ++G D+ F+ + + Sbjct: 606 EDLYKCKYMKKFIGERFEGIISSITDFGIFVELENT-VEGCFMYKFSDS---HFEYIEDK 661 Query: 691 L--MGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L + + Y++G +V + V+ V++D+R IDF L+ Sbjct: 662 LSCINIDKNKRYKIGQKVMIEVKNVDLDKRNIDFDLM 698 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 233/694 (33%), Positives = 368/694 (53%), Gaps = 37/694 (5%) Query: 59 LRAMERDGQLVFTRRQCY---ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQM 115 L +E+DG+LV+ + Y L + + G V G+ F+ +EGR+DD+Y+ E + Sbjct: 70 LHELEQDGRLVYNKNGTYHAAPLKTKPQGLTGRVERVNKGFAFVVIEGREDDIYVDLELL 129 Query: 116 KTCIHGDQVLAQPL---------GADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV 166 GD V QPL G + R E R+ ++ ++IVG V Sbjct: 130 NGAWDGDIVQVQPLSKNLRSKGRGDSGRNRTEGRVTDIVERSNAEIVGIIEINPRFAVVQ 189 Query: 167 PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 PD+ RL I + PDQ+ AR G V+V++T+ TRR++A G+IV VLG + + Sbjct: 190 PDNKRLYDPIYLEPDQVGAARHGDKVIVKVTEWSTRRSQAEGEIVSVLGAAGNNDVEMHA 249 Query: 227 ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE 286 L +PY +P VE + + ++ ++ A R D+RD+ TID DA+DFDDA+ Sbjct: 250 ILAEFGLPYHFPDEVEAEAQKIPNKIVKKDLAKRRDIRDVLTFTIDPVDAKDFDDALSVR 309 Query: 287 KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP 346 + V IADVS+YV P T L++EA R TSVY + +PMLPE LSN LCSL P Sbjct: 310 YLDEDVVEVGVHIADVSHYVLPGTELEKEALRRATSVYLVDRTVPMLPEKLSNNLCSLRP 369 Query: 347 QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH 406 DRL ++SKG+L F V+ S R TY + +L + K Sbjct: 370 NEDRLAFSAIFEITSKGKLLKEWFGRTVIHSDRRFTYEEAQAVLDSGE------GDFPKE 423 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 L+ L+ L K+ K R ++G I+FE+ E +F + E R I +R+D++KLIEE M+LA Sbjct: 424 LDTLNKLAKIFRKERFKKGAINFETPEVRFRLDPEGRPLGIYTKERHDSNKLIEEFMLLA 483 Query: 467 NISAARFVE-----KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE-PRDYA 520 N A +V + K ++RIH+ P + + +F + +A+LGL+L + + + Sbjct: 484 NKRVAEYVYSLSKGEDKNTMVYRIHEAPDPDRLQTFANFVAKLGLKLEVEEESKIAKSMN 543 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 +L V +P+ +++++ +R+M +A Y E+ GHFGLA + Y+HFTSPIRRYPD+ HR Sbjct: 544 AMLAKVEGKPEQNLIESLAVRTMAKARYSTEDLGHFGLAFRRYSHFTSPIRRYPDVMAHR 603 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM- 639 +++ L GG + E + +H S ER A EA R + + ++M Sbjct: 604 LLQHYL------------DGGANVDQETYERASKHSSERERLAAEAERASIKYKQVEYMS 651 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 + F G+I+ VT FG FV + + +GL+ ++ L +DYY D+ R++G+ + + Sbjct: 652 MMDPEKEFGGIITGVTEFGIFVEITETASEGLIRMTDLGDDYYELDKENYRVIGQHTKKI 711 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 Y GD V+V+V+ N+ R +D L ++ R+ Sbjct: 712 YAFGDAVKVKVKETNLARRSMDLYLAGTKPGRRS 745 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 250/731 (34%), Positives = 401/731 (54%), Gaps = 24/731 (3%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P+ +FI H +K+ P + ELA + EE + L+ +E G++V +R+ Y Sbjct: 4 PVSIIQFI--H-SKKYTPMTAAELAEHFEVNDEE-YRAFCKLLQDLEFQGEIVKIKRKQY 59 Query: 77 ALPERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLSSEQMKTCIHGDQVLAQ------- 127 A P++++L+ GT+ + G+GF+ +G D++++ E M + +HGD V+ + Sbjct: 60 ANPKKVNLLVGTMDCNSRGFGFVVPAKKGEGKDIFVNEENMNSAMHGDIVVVRLPDLEQI 119 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 P +KG +IV VL IVG + + +VVPD++RL D+ + A Sbjct: 120 PKRGKKKGGGSGQIVNVLKRANPFIVGTFKKSKRLLYVVPDNARLFRDVYVTEGDAKDAT 179 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 G VVV++ Q P+R G+I E+LG + + + ++P + + V + Sbjct: 180 PGDKVVVKIVQWPSRHLNPEGEITEILGKEGDPKVDLHSIIYQFKLPQAFHKKVSNEAEK 239 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 + +E+P+E R+DLR ++TID +DA+DFDDA+ EK G W+L V IADVSYYV+ Sbjct: 240 ISQEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGVHIADVSYYVK 299 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 + +D+EAR RGTSVY P +VIPMLPE LSN LCSL DRL +T+ +G + Sbjct: 300 QDSAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLVTIDPEGNILK 359 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKAREERGG 426 +V++ RLTY + I+ + +VK L EL L ++L K + RG Sbjct: 360 STVKHSVINVTKRLTYKQATAIINNES--AGNIPEMVKDVLVELAQLAQILFKNKMNRGA 417 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 I + E + E IE++E+ +R+ +H+L+EECM+LAN A F+ K K P + R+H Sbjct: 418 IELDLPEVSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFMHKNKLPLISRVH 477 Query: 487 DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQA 546 +P E + F + GLE + + L + +P+A M+ +LL+SMKQA Sbjct: 478 PEPDEEDMLEFADFVR--GLENTRVDPFKIHQLQAFLAEIRGKPEAHMVNLVLLKSMKQA 535 Query: 547 IYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 +Y GHF LAL++YAHFTSPIRRYPDL +HR + +Q G Sbjct: 536 VYSATESGHFALALENYAHFTSPIRRYPDLIIHRTL------DQHFSGELRSPVIQKMWE 589 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDL 666 + + HCS+ ERRA+EA R++ F ++VG+ F+GVI+ V +GFFV+L + Sbjct: 590 NCLPEWAGHCSVTERRAEEAEREITKLKLLRFFENRVGDNFEGVITGVQEYGFFVQLSEY 649 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++GLVH+ +L++D Y+ + L+G + +R+GD V+V++ +++ +R++DF Sbjct: 650 LLEGLVHIRTLEDDIYQISKKHMALVGTRRKKMFRVGDVVKVKIYKIDLLKREVDFIPYE 709 Query: 727 SERAPRNVGKT 737 + + GKT Sbjct: 710 NRNEKPHRGKT 720 >UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYR8_DESDA Length = 852 Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust. Identities = 289/838 (34%), Positives = 421/838 (50%), Gaps = 75/838 (8%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 PS E +L+ L + +P D L L + E+ E L L +ER G + R + Sbjct: 21 FPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKE-LEAALDDLERQGSALRLRGGLWT 79 Query: 78 LPERLDLVKGTVIGHRDGYGFL----------------RVEGRKDDLYLSSEQMKTCIHG 121 PE L + G R+G GF+ + G KD +Y+ S Q H Sbjct: 80 RPENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKD-IYIPSAQNGGAWHQ 138 Query: 122 DQV-LAQPLGADRKGRREARIVRVL------VPKTSQIVGRYFTEAGVGFVVPDDSRL-- 172 D V +A GA R E RIV ++ VP + +V R+ F P DSRL Sbjct: 139 DLVRVALSPGAQRGPSPEGRIVEIVERGLKEVP--AHVVHRHGNSL---FCRPADSRLPA 193 Query: 173 SFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 F++ +P A+ V++ L +P ++ G + ++ HE Sbjct: 194 DFNVELPAGSEAPAQGTLVLLAPL--KPLASDLWSATLLGNYGREDDVAVQEELVKLNHE 251 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 +P +P + E +P EA GR D+RDL LVTIDG DARDFDDAV+ E++ GG Sbjct: 252 VPRDFPAGALAE----AEALPGEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGG 307 Query: 292 -GWRLWVAIADVSYYVRP-----STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 GW L VAIADVS+YVRP LD EA +RG S YFP V PMLPEVLSNGLCSL Sbjct: 308 KGWVLRVAIADVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLR 367 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV-WHILQGDQ----DLR--E 398 P V+RL ++ E+ ++ G+ +F E VM S ARLTY +V IL D+ +LR E Sbjct: 368 PHVNRLAVLAEIPFTAAGKPGKPRFSEVVMRSAARLTYDQVKACILDKDEAALAELRTEE 427 Query: 399 QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKL 458 + ++ L++ LY VL R +RG + F+ EA+ + R+ + +RNDAH+L Sbjct: 428 RGEEVLAMLDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRERNDAHRL 487 Query: 459 IEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE-LPGGNKPEPR 517 IEE MI AN + AR + A P L+R+H P E + S LA G+E LP KP P Sbjct: 488 IEEFMIAANEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIENLP--PKPSPA 545 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 +L + P ++ + LR+M QA Y P N GHFGLA +Y HFTSPIRRY DL Sbjct: 546 AMQGILAAAQGTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLL 605 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 HRA+K L + G + E++L++G + ER A R++ L C Sbjct: 606 THRALKMSLGLDSGPL----------PAGEKLLRIGDQINRRERAAMACEREMDRRLGCL 655 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSG 697 +L +VG F G+++ VT FG FV L+ + ++G++ V L +D+Y FD L+G+ SG Sbjct: 656 ALLPRVGEHFSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSG 715 Query: 698 QTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV-GKTAR----EKAKKGDAGKKGG 752 +R+G ++EV + V++ +++ L+ E P+ + G+ AR + + AG+ G Sbjct: 716 VQWRMGQKLEVALSEVHLG--RLEIRLMPLE-LPKGIGGRGARSPRGSRGRGSPAGRAAG 772 Query: 753 KRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKK 810 R+ G ++ S GE + + K+ + KK A + + A K K Sbjct: 773 GRK--GSSSGWKLVSPGDGESRGRNDKPAKNGKNGKKSGAGKSGHSGQPGGQSARKGK 828 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 266/783 (33%), Positives = 398/783 (50%), Gaps = 56/783 (7%) Query: 11 AEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVF 70 A K +P +E +L + + S+ ++A + +++E L+ LR ++ +G + Sbjct: 48 AFKATGVLPGKEEVLAFIASQGGKVSKRDIARAFGLGSGQKIE-LKALLRDLKDEGAVEG 106 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 RR+ + +P L V + RDG G L + D + +H L P Sbjct: 107 GRRRMH-VPGSLPSVVLVDVTGRDGDGELLAVPTEWDSEEHGDAPVILLHVPDKLRGPAP 165 Query: 131 --ADRKGRR------------EARIVRVLVPKTSQIVGRYFT----EAGVGFVVPDDSR- 171 +DR R R+++VL Q +G + +G G ++P D + Sbjct: 166 GLSDRIVVRVEPNDPAPGIGYTGRVIKVLEKARKQQLGVFRKAPPGSSGGGRIIPIDKKN 225 Query: 172 LSFDILIPPDQIMGARMGFVVVVELTQR-----PTRRTKAVGKIVEVLGDNMGTGMAVD- 225 L ++ +PP GA G +V VE+ + PT R K E LG ++ T A+ Sbjct: 226 LGRELQVPPGAENGAEDGDLVSVEMMHQRVFGQPTARVK------ERLG-SLATEKAISL 278 Query: 226 IALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 +A+ H IP +P V +A + P AK GR D R LPLVTID DA+D DDAV+ Sbjct: 279 VAIHAHGIPNAFPAKV---IAEAEAARPATAK-GREDWRKLPLVTIDPPDAKDHDDAVHA 334 Query: 286 ----EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 + GG+ + VAIADV+ YVRP + LDREA RG SVYFP +V+PMLPE +SN L Sbjct: 335 VPDDDPDNAGGFIVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVVPMLPERISNDL 394 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA 401 CSL PQ DR + M + GR + F+ +M S A+L Y + + G D + A Sbjct: 395 CSLRPQEDRAALAVRMVIGKDGRKRSHSFHRILMRSAAKLAYEQAQAAIDGVSD--DTTA 452 Query: 402 PLVKH-LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 PL++ L L+ Y + +AR+ R + + E K + + ++R+ R DAH+LIE Sbjct: 453 PLLESVLRPLYAAYACVKQARDARQPLELDLPERKILLKEDGTVDRVIVPPRLDAHRLIE 512 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 E MILAN++AA +E+ K P +FR+HD P+ +++ R LA L + LP ++ P + Sbjct: 513 EFMILANVAAAETLEQKKVPLIFRVHDGPTLAKLSALREFLATLDISLPKTDQVRPSHFN 572 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 +L V A ++ ++LRS QA Y EN GHFGL L+ YAHFTSPIRRY DL +HR Sbjct: 573 RILGMVDGGDSAPLVNQVILRSQSQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHR 632 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 + L + T ++E + ++ S ERRA A R+ D L + Sbjct: 633 GLLRTLGADADALPETA-------TVETLAEISADISATERRAMAAERETVDRLIAHHLA 685 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 +Q+G VF+G I+ T G FV LD+ DG V +SL DYYRFD+ Q L+G+ +G+ + Sbjct: 686 EQIGAVFQGRITGATRAGLFVALDETGADGFVPAASLGQDYYRFDETRQALVGDRTGEMH 745 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLISS----ERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 R+GDRVEV++ + F L+S R G+ A A K + G +R Sbjct: 746 RIGDRVEVKLVEAAPVAGALRFELLSEGSYLGRGKSAKGRGAERPASKAAKARAGFAKRT 805 Query: 757 VGK 759 G+ Sbjct: 806 AGR 808 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/570 (39%), Positives = 314/570 (55%), Gaps = 37/570 (6%) Query: 163 GFVVPDDSRLSFDILIPPDQIMGARMGFVV-VVELTQ-----RPTRRTKAVGKIVEVLGD 216 G VVP D R + L+P + GA G +V + L +P R + +GKI GD Sbjct: 237 GRVVPTDRRSKAEWLVPAGEEGGAEPGDIVRAMPLPHTGYGLKPARIIEKLGKI----GD 292 Query: 217 NMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA 276 + I + TH+IP I+P + A VP E R DLRD+PL+TIDGEDA Sbjct: 293 ARSVSL---ICIETHDIPQIFPDEALSE-ARKARAVPLEK---REDLRDIPLITIDGEDA 345 Query: 277 RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEV 336 RDFDDAV+ E+ G+RL VAIADV++YVRP + LDREA RG S YFP +V+PMLPE Sbjct: 346 RDFDDAVFAERAENDGFRLIVAIADVAHYVRPGSALDREAFKRGNSCYFPDRVVPMLPEA 405 Query: 337 LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQD 395 LSNG CSL P DR C+ EM +++ G ++F +M S AR TY +V + GD+ Sbjct: 406 LSNGWCSLRPDEDRGCLFVEMMINAGGGKIRHRFGRGLMRSTARRTYEEVQQAHEAGDET 465 Query: 396 LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDA 455 L + L+ Y L KAR RG + + E K I N ++ I R D+ Sbjct: 466 L-----------DALYGAYHALIKARTARGTLDLDLPERKVILNEAGSVDAIIPRPRLDS 514 Query: 456 HKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 H+LIEE M+LAN++AA +E+ P ++R+H PS E + R L G+ LP + Sbjct: 515 HRLIEEFMVLANVAAAEELERLHRPCMYRVHAPPSDEKTEALRGFLDSFGISLPPAGQIH 574 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 PRD +L+ VA A ++ +LRS QA Y+P+N GHFGLAL YAHFTSPIRRY D Sbjct: 575 PRDLDHILKQVAGTEHAALINETMLRSQSQAEYNPDNIGHFGLALSRYAHFTSPIRRYAD 634 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 L +HRA L+A + G+ + + + + +H + ERRA A RD D Sbjct: 635 LLVHRA---LIAGLKLGVGSLEDDEASRF-----VDIAEHITATERRAAMAERDAIDRYL 686 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 FM D+VG F IS VT FG F+ +++ G+V +SSL +D++ D+ Q L+G + Sbjct: 687 AAFMADRVGARFAARISGVTRFGLFITVEENGASGIVPISSLPDDFWIHDEREQALIGRN 746 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 S +RL V VR+ + F+L+ Sbjct: 747 SRAVWRLAQSVTVRLAEATPITGGLVFNLL 776 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/670 (35%), Positives = 340/670 (50%), Gaps = 46/670 (6%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 ALP+RL + G + ++DGYGF+ K D+++ + + I GD V+ G D +GR Sbjct: 90 ALPDRLPRLTGRLEANKDGYGFVIDPEGKKDVFVPAHALAGAIDGDTVVCHVSGEDARGR 149 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS--FDILIPPDQIMGARMGFVVVV 194 RE IV V+ G +V P ++++ F + PP G G VV++ Sbjct: 150 REGVIVGVVAHGRKTFPGLLHRTPEGWYVKPKEAKIRHLFRVEAPPP---GTEEGTVVIL 206 Query: 195 ELTQRPTRRTKAV------------GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 E+T P + G+I+ VLG + + D+ + + +P+ VE Sbjct: 207 EVTVYPAPLSDPAAHSSEELPNIPAGRILTVLGADGDPAIDTDLVIASFGFSTAFPEEVE 266 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 +EVP R D R L +VTIDG+ A+DFDDA+ E++ G L + IADV Sbjct: 267 ALAHRRAQEVPIVPDKERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIHIADV 326 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S YV P + LDRE R TSVYFP +V+PM PEVLSNG+ SLNP+ DRL + + Sbjct: 327 SAYVLPGSALDREGFARATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTARIDRE 386 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G++ + +V+ S R+TY++V L G+ Y P L + + +L K R Sbjct: 387 GQVLSWTLDRSVIRSRMRMTYSEVHRALTGEPS--PDYLPYENRLHTMWRVASLLRKRRM 444 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 +G + F+ E + + + I ++ R +H+LIEE M+LAN A + + AL Sbjct: 445 GKGSLDFDLPEPEIVLDLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLRERLGTAL 504 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPE---PRDYAELLESVADRPDAEMLQTML 539 FR H+ P+ E I + S LA LGL KPE PRD + +LE P + + Sbjct: 505 FRAHETPTPEKIENLYSFLASLGLPF---TKPEVVTPRDLSRILEETKGSPLEHPVHYSV 561 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRS+KQA YDP GHFGLA Y HFTSPIRRYPDL +HR + LA G Sbjct: 562 LRSLKQARYDPSPLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLD--LATSSG-------- 611 Query: 600 GGYHYSMEEML-----QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 ME +L + QHCS ER+A EA R D+ K F+ +G F G I+ V Sbjct: 612 ------MESLLPGSLSAVAQHCSERERKATEAERMAIDFKKVRFISKHLGESFDGRITGV 665 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 FG FV L F++G++ + L DYY + + ++ G +G+T+ +GD V V V V+ Sbjct: 666 ASFGLFVELSPFFVEGMIPIHMLGRDYYEYREDRHQIRGSRTGRTFSVGDAVRVTVAKVD 725 Query: 715 MDERKIDFSL 724 + DF L Sbjct: 726 FQRLRCDFVL 735 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/701 (32%), Positives = 381/701 (54%), Gaps = 30/701 (4%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 L+ L + +KP + +L + ++ + L+R+LR + R + R + Sbjct: 5 LKILNRSKKPLTFKQLLSQSGLDAKT----LKRQLRDLVRQNKAEKYRNGTFVSKNTPTE 60 Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 + G + H +GYGFL +G D+++ +M +HGD+V P +G++E R+V + Sbjct: 61 ITGKLDLHPNGYGFLSHDGEGRDIFIPKNKMNGAMHGDKVTISP--ETFRGKQEGRVVEI 118 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + +IVGR AG+ VVP +++ I + +++ + VV+VELT P+ + Sbjct: 119 VERSEQKIVGRIENLAGIMRVVPMTRKVNTYIYLTSNKVQ-YKDDTVVLVELTHFPSEGS 177 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 A G++ +VLG + +I L ++I ++P+++E+ V E+ + A R DLR Sbjct: 178 AARGQVNKVLGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPGA-RTDLR 236 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 LP VTIDGE A+DFDDA+ EK + L+V IADV ++V+P TP+D EA RGTS Y Sbjct: 237 SLPTVTIDGETAKDFDDAISIEKTENE-FILYVHIADVCHFVQPGTPVDNEAYRRGTSFY 295 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +PMLPE LSNGLCSL P DRL + ++T + G+ FY ++++S RLTY Sbjct: 296 FPEFAVPMLPESLSNGLCSLRPNEDRLALTAKITYTKDGQRKKAYFYRSIINSDRRLTYN 355 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 V +L+ ++ +E+ ++ L++ L + R + G + F+ E F + + Sbjct: 356 SVNDVLE--KNTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFELDENGEV 413 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 I +R+ +H++IE MI AN + F+EK + +++RIHDKP + F + A Sbjct: 414 TAIIPAERHLSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDFAGLAATF 473 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 G+++ + P+D ++ E+V + A++L L+R+M +A Y+ N GHFGLA SY Sbjct: 474 GVDVTVKD-VTPKDVKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFGLASDSYT 532 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA---ER 621 HFTSPIRRYPDL +HR I L + H +E G L C ++ E+ Sbjct: 533 HFTSPIRRYPDLMVHRLICNTLFGTEYH----SEAG-----------LDDACKLSTENEQ 577 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 RA+ A RD++ + K ++ V F V+ SV FG + ++ + + G V + S+ D Sbjct: 578 RAENAERDISKFKKLKYLAKHVDEPFGAVVMSVGAFGLNIYIESVMLKGTVSLESIPGDV 637 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 Y+F + Q + G +G+ +R D +EV VE ++MD ++ F Sbjct: 638 YQFMKKEQIVRGRVTGKMFRAADLIEVMVERIDMDMQEAYF 678 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 254/721 (35%), Positives = 390/721 (54%), Gaps = 46/721 (6%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P EL L + EE+ + L M+ +G + + + Y+ E KGT +R Sbjct: 24 PMKEKELCFFLGVPKEEK-AAFQEILMEMQEEGVIGISLQGKYSRAESFS-QKGTFHANR 81 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTSQI 152 G+GF+ + +++D+Y+ + + GD V G + E +I +VL ++ Sbjct: 82 RGFGFVSLSEKEEDVYIPKGEAGNAMDGDLVKVILTKKSENGSKAEGKISKVLERANKEV 141 Query: 153 VGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE-LTQRPTRRTKA----- 206 +G + ++ PD+ +L ILI P + GA G VV+E L+ P++ KA Sbjct: 142 LGLVKEKREGLYLSPDNPKLPDCILISPGRDKGAVPGDKVVLEILSYGPSKENKAPRGRI 201 Query: 207 ------------VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV-P 253 VG++ E+LG GM V +R+ +P +P+ V + L V P Sbjct: 202 PRKRISPLLSCPVGEVKEILGHKDDPGMDVLSVIRSFSLPEEFPEDVLLEANQLPNAVSP 261 Query: 254 EEAK-AGRVDLRDLPLVTIDGEDARDFDDAV----YCEKKRGGGWRLWVAIADVSYYVRP 308 E+A+ GR D R L +TIDGEDA+D DDA+ + EK+ +RL+V IADVS YV+ Sbjct: 262 EKAEETGRKDFRKLTTITIDGEDAKDLDDAISLDYFPEKEE---YRLYVHIADVSDYVKE 318 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 + LD EA RGTSVY +VIPMLP+ LSNG+CSL+ VDRLC+ C M +GR + Sbjct: 319 GSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLHEGVDRLCLSCIMDFDREGRPLSH 378 Query: 369 KFYEAVMSSHARLTYTKVWHILQG----DQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + +++ S+ R++Y KV +L+ D + + Y P + L ++ L ++L K+R R Sbjct: 379 EITPSIICSNKRMSYHKVTALLEDKEWEDPEEKLSYLPFHELLTKMRELARLLRKSRMAR 438 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + F+ E+K F+ I +I +R ++HK+IEE M++AN + A P L+R Sbjct: 439 GALDFDFPESKVYFDENGNISKICAEEREESHKIIEEFMLIANETVAEEYYWRDIPFLYR 498 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRS 542 IH+KP E + VL+ L + P+ ELL + +P+ ML +M+LRS Sbjct: 499 IHEKPDWEKWQNLSHVLSSFSYSLKAKDPDNLRPKALQELLSKLKGKPEEAMLSSMILRS 558 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 +KQA Y E GHFGLA + Y+HFTSPIRRYPDL +HR IK +A ++ E Sbjct: 559 LKQAKYSTEPEGHFGLASKYYSHFTSPIRRYPDLQIHRIIKENIAYQE------NEKRRR 612 Query: 603 HYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 HY E +L + S+ ERRA+EA RD KC +M + +G VF G IS +T +G +V Sbjct: 613 HY--ERILPDVASQSSLRERRAEEAERDCMKLKKCQYMKNFLGEVFPGRISGLTQYGIYV 670 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L++ I+G++ + + DYY F++ L GE+SG+T+ +GD + + V AV+ R ID Sbjct: 671 TLEN-SIEGMIPLRFMTEDYYIFNEEEISLRGEASGKTFHMGDPMWISVYAVDTLSRSID 729 Query: 722 F 722 F Sbjct: 730 F 730 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 254/723 (35%), Positives = 392/723 (54%), Gaps = 24/723 (3%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE +L + K + K + ++L+ LH E + + L A+E + L +R+ Y Sbjct: 12 REELLALIEKSDYKGMNVEQLSHTLHKEEHALFVEMMKELNALEAEHILARDKRERYFFS 71 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 ++L V G + + G+GF VE + Y++ ++++ + D+V A+ + G RE Sbjct: 72 KQLGYVVGKLRVNPKGFGF--VEYDEGSFYVAPDKLRFALDQDEVYARSW-TNNDGSREG 128 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE---L 196 IV V+ + +VG G + +PD DI P +I F +V + L Sbjct: 129 EIVEVIKHNINNVVGVVKMREGRKYFLPDA-----DIYNRPFKITNYD-DFHLVHDSKVL 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + + I + +G G+ + L +I +P+ V ++V + E + + Sbjct: 183 VHIDSYGSTLKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVMEEVMQIPEALQSKE 242 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLR L +TIDGEDARD DDA+ EK G +RL+V IADVS+YV + LD+EA Sbjct: 243 YANRKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVSHYVTAGSALDKEA 301 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTSVY +V+PMLP LSNG+CSLNP+VDR + C M ++ KG + Y+ Y +V++ Sbjct: 302 YARGTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVIDYQIYPSVIN 361 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S R+TYT V IL+GD+ +++QY L+K ++ L ++ K RE+ G I F++ EAK Sbjct: 362 SDERMTYTAVNAILEGDEQVQKQYPHLLKMCLDMKVLSGIIRKRREKLGAIDFDTNEAKI 421 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + N + + I +R +A ++IE+ MI AN + A V + P++FRIH++P + I Sbjct: 422 LVNEKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQPEPKRIRE 481 Query: 497 FRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 F + LG GG P +L+ + +L T +LRSM++A YD GH Sbjct: 482 FARIAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARYDRRCIGH 541 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 FGLAL++Y HFTSPIRRYPDL +HR + KY +G Q + + + Q Sbjct: 542 FGLALKNYLHFTSPIRRYPDLVVHRMLRKYFF---EGLQDSEKMARDEQWIEDAAYQ--- 595 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S ER A +A R V D K ++M ++ + GVIS +T FG FV L + ++GLVH+ Sbjct: 596 -ASERERNAIDAERAVEDMKKAEYMEGRIDRQYDGVISGITRFGLFVELANT-VEGLVHI 653 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 S++D+DYY +D + L+GE S YR+G RV V A N +R+IDF L+ ++ Sbjct: 654 STIDDDYYHYDDETKCLIGEHSANVYRMGQRVRVVCVAANRFKREIDFELVVKKKKKHRR 713 Query: 735 GKT 737 GK Sbjct: 714 GKV 716 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/686 (33%), Positives = 372/686 (54%), Gaps = 34/686 (4%) Query: 57 RRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMK 116 +RL +ER+G++ + + LP+ DL+ G + +R G GFL + K + E Sbjct: 38 KRLARLEREGRIARIKGNRFILPQEADLIPGRIRINRQGKGFLEADDPKLPTIVVPEHAT 97 Query: 117 -TCIHGDQVLAQP----LGADRKGRRE--ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDD 169 T + D+VL + G R + E +++R+L + +Q+VG + + +V+PDD Sbjct: 98 GTAFNNDRVLVRRDVRYRGRSRIFQEEETGKVIRILERERTQLVGTFQSSNRFLYVIPDD 157 Query: 170 SRLSFDILIPPDQIMGAR--MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA 227 R+ DI + + +G R +G VVVEL +R G+I+EVLG G+ + Sbjct: 158 PRIPHDIYVTEPRDVGRRPNLGDKVVVELKLWESRELNPEGEIIEVLGAPDEEGVDMLSV 217 Query: 228 LRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK 287 LR + +P +P+ V Q+ + ++ E AGR D R +VTID DA+DFDDA+ E Sbjct: 218 LRQYNLPLHFPKTVLQEAHAIGNQIDERDIAGREDCRAHTVVTIDPVDAKDFDDAICLEA 277 Query: 288 KRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 G W+LWV IADVS+YV+ + LD EA+ RG S Y +VIPMLPE LSN LCSL P Sbjct: 278 APNGHWKLWVHIADVSHYVKVGSALDEEAQKRGNSTYLVDRVIPMLPEALSNELCSLKPG 337 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHL 407 V+RL E +S++G++ +FY AV+ S R TY +V LQ R+ P+ + L Sbjct: 338 VERLTKCVEFLLSAEGKVIRSRFYPAVIHSKRRFTYEEVLEALQ-----RKPAGPIEEML 392 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + + + L +AR + G + + E+K + + +I RI++ + + +H+LIEE M+LAN Sbjct: 393 HHANTMAQRLRRARMQAGSLDLDFPESKIRLDEQGKILRIDRVENDISHQLIEEYMLLAN 452 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA 527 + A + ++RIH+ P + + FR + L ++ GN + +LL+ + Sbjct: 453 EAVAGKLMALDRQTVYRIHEPPDDKRLQEFREDV--LSHQIQCGNLTNRHEVQKLLQKLN 510 Query: 528 DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA 587 P L+ L+S+ +A Y E GH+GLA Y HFTSPIRRY DL +HR++ Sbjct: 511 SLPIGPALKIGFLKSLMRARYAVEPLGHYGLAKAKYTHFTSPIRRYADLVVHRSL----- 565 Query: 588 KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN-- 645 + G + E + + +H S ER + +A RD D ++ Q+ + Sbjct: 566 ---------FQKGREKVAAESLRNVAEHISDTERNSADAERDSKDVKLFAYLQSQLDSGR 616 Query: 646 --VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 + G+++ V FGFFV + L + G+V +S+L +D+++FD +L+G S + ++LG Sbjct: 617 PQRYPGLVTDVRNFGFFVDVPGLGMSGVVPLSTLPDDFFQFDSNRNQLIGRRSRRVFKLG 676 Query: 704 DRVEVRVEAVNMDERKIDFSLISSER 729 D+VEV++ V+ ++++DF L ER Sbjct: 677 DKVEVQIHKVDKFKKQVDFRLAGPER 702 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 218/696 (31%), Positives = 382/696 (54%), Gaps = 17/696 (2%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 KP ++ A + + Q L L + ++ ++ + + Y+ P ++ +G Sbjct: 23 KPMKFNDFAFIFDMHSKNQKNLLSNSLNYLIKEKKIKYINNR-YS-PTCSNIYEGVFEKG 80 Query: 93 RDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG---ADRKGRREARIVRVLVPKT 149 R +GF+ VEG +D+++ + GD+V + + DRK RE RIV + Sbjct: 81 RGLFGFVNVEGLDEDIFVVGSESMDAFSGDKVKVEVIKEKEGDRK--REGRIVEITEKVK 138 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 Q VG ++ E GFVV D+ + DI IP I A+ VVVE+T P + VGK Sbjct: 139 RQTVGTFYKEKTFGFVVSDNPNFTNDIYIPKAGIKYAKNKDKVVVEITDFPKDKKNWVGK 198 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 I +VLG G+ ++ + +++PY + ++ L+ + ++ K R DL D+ + Sbjct: 199 ITKVLGRKDENGVDIEALIYEYDVPYEFSHLALKEADELEFDSFDKFKGKRKDLTDVNIF 258 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TIDG A+D DDAV KK + L V IADVS YV+ ++ +D++A RGTS+YF +V Sbjct: 259 TIDGPTAKDLDDAVSIVKKENE-YVLSVHIADVSNYVKRNSEIDKDAYERGTSIYFADRV 317 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 IPMLP+ L LCSLNP+ ++ +M ++ +G+L Y FY++++ S A+ Y +V + Sbjct: 318 IPMLPKTLCENLCSLNPKEEKKAFSVDMRINKEGKLLDYNFYKSIIKSKAKFVYDEVNEL 377 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQ 449 G +DLRE+Y + L + LY++L + R G + F+ +E FI + + Sbjct: 378 FDGSKDLREEYYTYEEDLNTMKELYELLRQRRYVEGNLDFDVDE-NFITVENGVVTDVSL 436 Query: 450 TQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP 509 +R A ++IE+ M++AN SA F ++R+H++P E ++ F LG +L Sbjct: 437 RERGIAERIIEQFMLVANTSACEFFSSMGLNGIYRVHEEPDKEKLSGFIKFANALGYKLR 496 Query: 510 GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 + ++ E L+++ + ++ +T+LLR MK+A+Y EN+GHF LA+++Y HFTSP Sbjct: 497 LHDGHYSKELEEFLKTIEGDKNEQLFKTVLLRCMKKAVYTTENKGHFALAIENYTHFTSP 556 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR + +L GN + E+M + H S ERR++E R+ Sbjct: 557 IRRYPDLMVHRILSNILL------GN-IDLNNLEKEREKMEKKANHLSKMERRSEEMERE 609 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 C +M + + ++G +S + G +V+L++ I+G+++ ++L++DYY +D+ Sbjct: 610 SDKIFICQYMENFIDEEYEGRVSGFSSKGMYVKLNNS-IEGVIYFTNLNDDYYIYDEEHY 668 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L+G G+ + +GD++ ++V +V+ +R+++F +I Sbjct: 669 SLVGRDFGRRFTMGDKINIKVISVSKLKREVEFCII 704 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 270/748 (36%), Positives = 374/748 (50%), Gaps = 58/748 (7%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR----RQCY 76 RE + +T+ + E+A ++ G E LR LR + +G LV R Sbjct: 39 REALRRFVTEASGRVGKREIARAFNL-GPEHKAALRAMLRELALEGTLVPAGARRFRASA 97 Query: 77 ALPER-LDLVKGTVIGHRDGYGFLRV-----EGRKDDLYLSSEQM--KTCIHGDQVLAQP 128 A+PE L V GT DG R +G +++ EQ G++V+A+ Sbjct: 98 AMPEAALVQVTGT---DPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVAR- 153 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFT---------------EAGVGFVVPDDSRLS 173 L GR E R +R L +IVG + A G +VP D R Sbjct: 154 LKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRAK 213 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI-ALRTHE 232 + +IP + MGA VVV E K +IV LG MG +V + A+ TH Sbjct: 214 AEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKPA-RIVARLGP-MGDARSVSLLAIHTHS 271 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 IP +P + + PE GR DLRD+PL+TIDGEDARDFDDAVY E G G Sbjct: 272 IPDQFPAEALSEAERARGVSPE----GREDLRDVPLITIDGEDARDFDDAVYAEPD-GDG 326 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 +RL VAIADV++YVRP + LDREAR RG SVYFP +V+PMLPE LSNG CSL P DR C Sbjct: 327 FRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGC 386 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN 412 + E+ + + G T ++F +M S ARLTY + I+ ++ +++ + L Sbjct: 387 LFAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFT 446 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 ++ L AR RG + + E + RI IE R+D+H+LIEE M+LAN++AA Sbjct: 447 AWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAE 506 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL----ESVAD 528 +E+ + P L+RIH PS E + R L+ +G +LP RD +L + A Sbjct: 507 ELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEAS 566 Query: 529 RP------DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 P ++ +LR+ QA Y P+N GHFGLAL +YAHFTSPIRRY DL +HRA+ Sbjct: 567 GPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRAL 626 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 + G G + ++G+ S AERRA A R+ + ++ D+ Sbjct: 627 IGM--------GTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADR 678 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 VG F G +S VT FG FV L GLV VS+L +D + D+ Q L G G RL Sbjct: 679 VGAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRL 738 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSERA 730 G V VR+ + F+L+ + A Sbjct: 739 GQPVTVRLVEATPVTGGLLFALVGANPA 766 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 367 bits (942), Expect = e-99, Method: Compositional matrix adjust. Identities = 226/713 (31%), Positives = 369/713 (51%), Gaps = 28/713 (3%) Query: 22 EFILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I + L K K A + +++ +L++ + E + L+ R G + + L + Sbjct: 15 QLISDVLEKSNKEALNYKQVSAKLNLTDADSRETISEILKEQARKGVFSEPEKGKFRLKD 74 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-E 138 + G V DG F+ + + D+++S+ ++ +HGD+V + A + GR+ E Sbjct: 75 LKTFITGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVY-IYAKKSGRKNE 133 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 +V ++ + +G FV DD ++ DI +P + + GA+ G V V +T+ Sbjct: 134 GEVVEIIERSKTDFIGVIRISERYAFVNVDDRKMLHDIFVPLNDLNGAKNGQKVQVSITE 193 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P +GKI+ +LG+ ++ L + P +P VE + + E+V Sbjct: 194 WPEGVKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAIPEQVSAAEIK 253 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 GR D R+ TID DA+DFDDA+ + G + + V IADVS+YV+P++ LD+EA Sbjct: 254 GRKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYA 313 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TSVY +VIPMLPE LSNG+CSL P D+LC + K L F V+ S Sbjct: 314 RATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVNEWFGRTVIHSD 373 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R +Y + +++ YA + L EL Y + DK + + G ISFES E KF Sbjct: 374 RRFSYEEAQEVIENKAG---DYAAEILKLNEL--AYILRDK-KFKNGAISFESTEVKFKL 427 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-----KEPALFRIHDKPSTEA 493 + + + +R DAHKLIE+ M+LAN A F+ K K ++R HD P+ E Sbjct: 428 DETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYRSHDSPNLEN 487 Query: 494 ITSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + +F A G ++ +K + L+E V + + +L + +RSM +AIY + Sbjct: 488 LGNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAIYTTKK 547 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 H+GLA Y HFTSPIRRYPD+ +HR LLA ++ + E EE Sbjct: 548 TSHYGLAFDHYTHFTSPIRRYPDVMVHR----LLAAYLNNEKSANE--------EEYEIA 595 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 H S E+RA +A R + + +++ + VGN+F G+IS VT +G +V L + +G++ Sbjct: 596 ASHSSAMEKRAADAERASIKYKQAEYLEENVGNIFAGIISGVTEWGMYVELTENKCEGMI 655 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + + +D+Y D+ ++G+ + Y+LGD V+V+V+ V++ +R+IDF+LI Sbjct: 656 RLRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQIDFTLI 708 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 213/647 (32%), Positives = 338/647 (52%), Gaps = 26/647 (4%) Query: 95 GYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVG 154 GYG++ VE DD++++++ + T GD V R+ R E I +++ K ++ VG Sbjct: 91 GYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFNRRRRKRSEGEITKIIKRKRTEFVG 150 Query: 155 RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVL 214 + GFVV DD + D IP +++ GA G VVVE + P + +GKI VL Sbjct: 151 TLQQKKDFGFVVIDDKSMHTDFFIPGNKLNGAENGDKVVVEFEEWPKKADSPLGKITRVL 210 Query: 215 GDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGE 274 G + L + +P+ +P+ VE+ + + +E + R D+RD+ TID + Sbjct: 211 GTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKIDTSINKEEISKRRDMRDVLTFTIDPK 270 Query: 275 DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLP 334 DA+DFDDA+ EK + G + + + IADVS+Y++P T LD EA R TSVY +V+PMLP Sbjct: 271 DAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQPGTILDEEAYERATSVYLVDRVVPMLP 330 Query: 335 EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ--- 391 E+LSN CSL P+ ++ + + F V S R Y + HIL+ Sbjct: 331 EILSNNACSLRPKEEKFTFSAVFEIDDNATVKNQWFGRTVTYSDERFAYEEAQHILETGT 390 Query: 392 ----GDQDLREQY----APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 D +R L++ + L+ L K + R + G ISF+ E KF N + Sbjct: 391 GTIPDDVSIRNHAYSVRGALIEAVVTLNTLAKKMRTRRMKDGAISFDKVEVKFNLNEDNN 450 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKA--KEPALFRIHDKPSTEAITSFRSVL 501 + DA+KLIEE M+LAN A ++ K K+ ++R HD+P + + S ++++ Sbjct: 451 PVGVFFKTAKDANKLIEEFMLLANRKVAEYIGKQSPKKTFVYRNHDEPDDQKLASLQTIV 510 Query: 502 AELGLELPGGNKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 G +L ++ +LLE V R + M+ T+ +R+M +A Y E+ GH+GLA Sbjct: 511 GRFGHKLNLKDRSSTTSSLNKLLEDVQGRKEQNMVDTLAIRTMSKAYYGTESIGHYGLAF 570 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 Y HFTSPIRRYPD+ +HR +++ L G S EE H S E Sbjct: 571 DYYTHFTSPIRRYPDVMVHRLLQHYL------------DGAKSASEEEYETKCHHSSEME 618 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 A A RD +++ FM D F GVIS VT +G FV + + +G++ + +++D Sbjct: 619 NLATNAERDSIKYMQVKFMQDHENEEFLGVISGVTEWGIFVEIVENKCEGMIRLRDMNDD 678 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +Y F+ ++G+ +GQTY LGD V V+V+ ++ +R +DF+L+ + Sbjct: 679 HYEFNADEFSVVGKRTGQTYTLGDEVYVKVKNADLIKRHLDFTLLGN 725 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 257/717 (35%), Positives = 371/717 (51%), Gaps = 37/717 (5%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 IPS+E IL+ +T S+ ++A I+G +++ L+R LR ++ +G L R Y Sbjct: 16 IPSKEQILQWITDNPGKRSKRDIAKAFGIKGAARID-LKRILRELQEEGHLEKVGR-TYR 73 Query: 78 LPERLDLVKGTVIGHRDGYG--FLR--------VEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 P++L V + D G F R VE R LY GD++LA+ Sbjct: 74 DPDKLPPVTILSVQAPDDNGDLFARPLEWHGEGVEPRV--LYTPRTADPAVGQGDRILAK 131 Query: 128 PL---GADRKGRR-EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 G+D + + A+++R + +I+G + A G + P + + Sbjct: 132 LFAVEGSDAEDHQYTAKLIRKIGTNPRKILGIFRKGAEGGVITPISKGSDKEWQVRAGDT 191 Query: 184 MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVD-IALRTHEIPYIWPQAVE 242 GA+ G +V EL R +I +GD G AV IA+ H IP +P V Sbjct: 192 HGAKDGELVEGELAGPKARMGAPRARITTRVGDP-GAARAVSLIAIHEHGIPDSFPNKVV 250 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKKRGGGWRLWVA 298 + K GR DLRDLPL+TID DARD DDA Y + GG +WVA Sbjct: 251 AEADAAKPA----GLTGREDLRDLPLITIDPADARDHDDACYAHADEDPGNKGGHVIWVA 306 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADV++YV P + LDREAR RG S YFP +V+PMLP+ LS LCSL+ V R + M Sbjct: 307 IADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRAVIAVRMV 366 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK-HLEELHNLYKVL 417 + ++G G+ F+ +M+S A L+Y + +G L E+ APL++ + L Y L Sbjct: 367 IDARGEKIGHTFHRGLMTSVASLSYEEAQAAQEG--TLSERTAPLIEGSIRPLFAAYDAL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 AR +R + + E + + + + R DAH+LIEE M+LAN++AA + Sbjct: 425 KIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMVLANVAAAETLIAK 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P LFR+H++PS E + + R V A GL L G + R LL++ A +E++ Sbjct: 485 RTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALLKA-AGEDTSELISI 543 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 LRSM+QA Y+PEN GHFGLAL+SYAHFTSPIRRY DL +HRA L G + Sbjct: 544 STLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRA----LIAAHGWGPDAK 599 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 G +E + + S ERR+ A RD +D ++ D+VG F G IS + F Sbjct: 600 IDGLSPDEIERLEDTAKLISGTERRSMVAERDTSDRYLAAYLSDRVGAEFGGRISGIARF 659 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV-EAV 713 G FV+LD+ DGL+ + +L +Y+ FD Q LMG +G +GDRV V++ EAV Sbjct: 660 GVFVKLDETGADGLLPMRALGQEYFHFDAEAQTLMGADTGTMISIGDRVLVKLAEAV 716 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 228/720 (31%), Positives = 374/720 (51%), Gaps = 34/720 (4%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E I+ L K+ KP ELA L+I + + L + L +E D + T++ + + Sbjct: 3 EQIVAILKKQTKPIDTIELAQLLNINKIDDNKMLLKALVELENDNIIGVTQQHRFYYFDP 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVL---AQPLGADRKGRRE 138 ++G + ++ G+GF+++ +++ Y+ + + + DQVL + + + E Sbjct: 63 KIYLRGVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILKKQKNDNNSKKAE 122 Query: 139 ARIVRVLVPKTSQIVG---------RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMG 189 A++++VL +VG +Y ++ D I + G Sbjct: 123 AQVIKVLKRNNEYVVGVIKKNRHQQKYLEILNNKLTQYRAEIINLDEAIENTIVKGI--- 179 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLK 249 +T ++ KI+E++G+ G+ V L I + + + + Sbjct: 180 ------ITSINSKNNLMQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEALTEANQIN 233 Query: 250 EEVPEE---AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + + A R DL+ VTIDG D++DFDDA+ +K + G + L VAIADV++Y Sbjct: 234 QNIDVATMLANKSRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAIADVAHYA 293 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 ++ LD+EA RG SVY +V+PMLPE LSNG+CSLNP RL ++CEM + +G + Sbjct: 294 PHNSYLDKEAFERGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEIDQQGHVV 353 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 YEAV+ S ARLTY +V + Q+ A + + L LY++L +E G Sbjct: 354 NSSIYEAVIISKARLTYDEVNKLFC--QEKNHISAEIAQMLFLAQQLYQILVWKKEHDGV 411 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 + F+ +E KF+ + +I+ I +R DA KLIE MI AN + A + P ++R+H Sbjct: 412 VDFDLDEPKFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMDLPFVYRVH 471 Query: 487 DKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 DKP + + + L+ LGL + G +D ++L + D+ + +++ ++LRSM++ Sbjct: 472 DKPKPKKLFDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISALVLRSMEK 531 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A Y N GHFGLA Y HFTSPIRRYPDL +HR +K L + + + +T + Sbjct: 532 AKYSDINDGHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLEQTRAF--- 588 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 + Q S+AE RA E R+V + ++M D++G + G+I+ VT FG FV L + Sbjct: 589 ---VSHASQQSSLAELRAMECEREVDKMKEAEYMEDKIGYEYNGIIAGVTSFGIFVELPN 645 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 I+GLVH++ L NDYY FD+ +L+GE + Y LG +V +RV+ + R+IDF L+ Sbjct: 646 T-IEGLVHITDLKNDYYVFDEKSLKLIGERKRKEYFLGKKVRIRVKKASKKLRQIDFELV 704 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 365 bits (938), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 215/699 (30%), Positives = 365/699 (52%), Gaps = 35/699 (5%) Query: 39 ELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGF 98 +++ +L+I + E + L+ + G V ++ + L + + G V DG F Sbjct: 33 QVSAKLNITDPDSRETILDILKQQTQKGVFVEAQKGKFKLKDLKTFIIGKVDMTADGAAF 92 Query: 99 LRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTSQIVGRY 156 + + + D+++S+ ++ +HGD+V + A + GR+ E +V ++ + +G Sbjct: 93 IIPDDEFEKDVFVSARKLHNALHGDKVKVY-IYAKKSGRKNEGEVVEIIERAKTDFIGVI 151 Query: 157 FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGD 216 FV+ DD ++ DI +P + GA+ V V++T P +G ++ +LG+ Sbjct: 152 KISDRFAFVIADDKKMMQDIFVPLSDLNGAKNRQKVQVKITDWPEGVKNPIGTVITILGE 211 Query: 217 NMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA 276 ++ L + P +P VE++ + E++ + R D R+ TID DA Sbjct: 212 QGENNTEMNAILAQYGFPLQFPPEVEKEANAIPEQITADEIKDRRDFRETVTFTIDPADA 271 Query: 277 RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEV 336 +DFDDA+ +K G + + V IADV++YV P++ LD+EA R TSVY +VIPMLPE Sbjct: 272 KDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNSALDKEAYGRATSVYLVDRVIPMLPER 331 Query: 337 LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ-D 395 LSNG+CSL P D+LC + +K + F V+ S R +Y + +++ D Sbjct: 332 LSNGVCSLRPHEDKLCFAAVFELDNKANIINEWFGRTVIHSDRRFSYEEAQEVIENKTGD 391 Query: 396 LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDA 455 E+ + +L+ L +L + + G ISFES E KF + + + + +R DA Sbjct: 392 FSEE-------ILKLNELAYILRDKKFKNGAISFESTEVKFKLDEDGKPLGVYVKERKDA 444 Query: 456 HKLIEECMILANISAARFVEKA-----KEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 HKLIE+ M+LAN A F+ K K ++R HD P+ E + +F A G ++ Sbjct: 445 HKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRSHDSPNLENLGNFALFAARFGYKI-- 502 Query: 511 GNKPEPRDYAE----LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 N +D A+ L+E V + + +L + +RSM +A+Y + H+GLA Y HF Sbjct: 503 -NMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAVYTTKKTSHYGLAFDHYTHF 561 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPD+ +HR + L KE+ E H S E+RA +A Sbjct: 562 TSPIRRYPDVMVHRLLAAYLNKEKSADAEEYEIA------------ASHSSTMEKRAADA 609 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R + + +++ + +GN++KG+IS VT +G +V L D +G++ + L +D+Y D+ Sbjct: 610 ERASIKYKQAEYLEENIGNLYKGIISGVTEWGMYVELADNKCEGMIRLRDLSDDFYVLDE 669 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++G+ +TY+LGD V+V+V+ V++ +R+IDFSLI Sbjct: 670 KNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLI 708 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 364 bits (935), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 225/655 (34%), Positives = 354/655 (54%), Gaps = 34/655 (5%) Query: 87 GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV-LAQPLGADRKGRREARIVRVL 145 G + H G+GF++ + ++ ++ M +HGD V +A A +RE ++ V+ Sbjct: 29 GVLQCHDKGFGFVQATDQDEEFFIREANMGEALHGDLVRVAVAARAPEDKKRECEVLEVV 88 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK 205 + +++VG + + FV PDD R+ D+ + PD GA+ G V+V + + R+ Sbjct: 89 ERRCTEVVGTFHHRSDFAFVEPDDQRILQDVYVAPDAFSGAKDGEKVMVSIDRFDDRKAS 148 Query: 206 AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRD 265 G+I+ V+G + + V + ++ +P VE + + ++PE+ R DLRD Sbjct: 149 PEGRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAESIPVKIPEDEIERRRDLRD 208 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 P+ TID DA+DFDDAV+ E+ G + + V IADVS+YV P T +D EA RGTSVY Sbjct: 209 KPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPDTAIDAEALERGTSVYL 268 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 + IPMLPE LSN +CSL P D+L M ++++G + Y+ E V+ S RLTY + Sbjct: 269 VDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICETVIHSKERLTYDR 328 Query: 386 VWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE 445 ++G + A +V+ + L K + + R + G I F S+E I + + Sbjct: 329 AQDYIEGGYPDDKMAADVVQ----ANRLAKTITRRRMQEGAIDFGSDEVNVILDDDGTPT 384 Query: 446 RIEQTQRNDAHKLIEECMILAN------ISAARFVEKAKE-------PALFRIHDKPSTE 492 I + +R A++LIEE M+LAN I+A V++ + P ++R+HD P +E Sbjct: 385 NIVRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLPFVYRVHDSPDSE 444 Query: 493 AITSFRSVLAELGLELP--GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 I + ELP GN D L++ V +P+ +++ LR+M +A Y Sbjct: 445 EIQQLAEYVRVFDHELPLTDGNA-RSSDLGALIDEVQGQPEEQVIVRAALRAMSKAEYAV 503 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 N GH+GL Y+HFTSPIRRYPDL +HR +K AK GG +E++ Sbjct: 504 GNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKR-YAK-----------GGSPADIEDLA 551 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 +HCS ER A+EA R+ + +++ + VG F GV+S VT FG FV + DL ++G Sbjct: 552 ARCEHCSEQERNAEEAERESVKLKQVEYVKNHVGEEFDGVVSGVTKFGVFVEITDLLVEG 611 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 LVHV + NDYY +D+ L GE++G +YR GD V V V + ++++R+ID + Sbjct: 612 LVHVREM-NDYYVYDESTYTLRGENNGTSYRPGDSVRVEVASASVEDREIDLLFV 665 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 253/757 (33%), Positives = 375/757 (49%), Gaps = 37/757 (4%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +P RE +L L + D +A ++G ++ LR +R +E G L R+ +A Sbjct: 18 LPDRETLLAFLRDAGETGKAD-IARHFGLKGADR-RALREMIRELEAQGALAKRGRKGFA 75 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR---- 133 L V + RDG G L V+ K D + + ++ G+ P DR Sbjct: 76 EAGSLPPVGVADVVERDGDGELYVKLTKSDDDVPNVRLAPG-KGEAAAGAPGLGDRLLVR 134 Query: 134 -----KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 G EA++++ L +I+G V P D + +++ P + Sbjct: 135 FERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDPSVAHDFKE 194 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 G +V+ ++ R GK++EV+G A IA+ +H IP + Sbjct: 195 GDLVLAQVGTHGGRYGPKPGKVLEVVGTENDPRAASLIAIHSHGIP----TGFSEAAEAE 250 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKKRGGGWRLWVAIADVSY 304 + E AGR DLRDLP VTID DARD DDAVY ++ GG+ +WVAIADV+ Sbjct: 251 AKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFVVWVAIADVAA 310 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL +R + M GR Sbjct: 311 YVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRMVFDKSGR 370 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKAREE 423 G++F +M S A+L+Y + + G D ++ PL+ L+ L + Y+ + R+ Sbjct: 371 KKGHRFVRGLMRSAAKLSYEQAQAAIDGQPD--DKAGPLLDPILKPLWDAYRTMKIGRDA 428 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 R ++ ES+E + I I I + +AHKLIEE M+ AN+ AA +E + P ++ Sbjct: 429 RSPLAIESDERRIIIKGGE-ITSITKRASLEAHKLIEEMMVQANVCAAESLEAKRSPLIY 487 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R+HD PS E + + L L + G P+ + +LLE + P+A ++ ++LR+ Sbjct: 488 RVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPNAAIINEVVLRTQ 547 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 QA Y +N GHFGL L YAHFTSPIRRY DL +HR + L G G T + Sbjct: 548 MQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALG--LGTDGLTDQ----- 600 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + ++ + + AERRA A RD D F+ D+VG F+G I+ VT FG F++L Sbjct: 601 -DIAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVGATFEGRITGVTRFGLFIKL 659 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 D DGLV VSSL +++ D L+GE +G+ + LG VEV++ + F Sbjct: 660 ADTGADGLVPVSSLGQEFFVHDDKMHALVGERTGKRWPLGLSVEVKLVEATPVTGGLLFE 719 Query: 724 LIS-----SERAPRNVGKTAREKAKKGDAGKKGGKRR 755 ++S + PR R+ A K G G RR Sbjct: 720 MLSEPLPPDPKMPRPRLGARRQAAVKPRGGLPKGVRR 756 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 359 bits (921), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 249/780 (31%), Positives = 392/780 (50%), Gaps = 53/780 (6%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 IL L + P S +E+ L I +++ + L L +++ GQ+V T+ + +A+ + Sbjct: 48 ILSLLYNSDHPLSSNEIITRLKITKQKK-QALELVLNVLQKQGQIVCTKGEKWAIASPMQ 106 Query: 84 LVKGTVIGHRDGYGFLRVEGRK-----DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 V GT + R G F+ V+ + D+++ E GD+V E Sbjct: 107 KVIGTFVVQRSGAAFVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQVIVYPTKHGKNFE 166 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVV--PDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 ++V++L +++ R + G VV P DS+L+ ++ ++ + ++V + Sbjct: 167 GQVVQILERPRKEVIVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLPEKPIENELLVII 226 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV--EQQVA-------- 246 T +G LG + + + IP +P V E+ VA Sbjct: 227 PTPNTNGELLMGIAQYSLGVEEDVRVQEKVVKLNYNIPCEFPLHVLKEENVAKDLFIKSK 286 Query: 247 GLKEEVPEE--------AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + VP + + A R DLR + VTIDGEDA+DFDDA+ C GW LWVA Sbjct: 287 AVFYNVPYQKYDDISQCSTAIRQDLRVIDFVTIDGEDAKDFDDAI-CVYPTDIGWDLWVA 345 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS++VR + LD EA RG S YFP V MLPE LSN CSL P+ +RL M +++ Sbjct: 346 IADVSHFVRAGSLLDSEALARGNSYYFPCSVESMLPEFLSNDFCSLKPKEERLVMATKIS 405 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN---LYK 415 + G+ F+ V+SS ARLTY +V L+ + R + L L+N L K Sbjct: 406 FDNDGKTKNVIFFPGVISSRARLTYEQVHLALEVKEISRLPGG--IDTLSMLNNASELAK 463 Query: 416 VLDKAREERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 VL R +RG + F+ E +F+ N A RR+ + + +R +H+LIEE M+ N + A F+ Sbjct: 464 VLQANRIKRGSLEFDLPETRFLINKATRRVIGVIRQERFFSHQLIEELMLAVNEAVATFL 523 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 + P L+RIH +P E + +LA L P+ + +LE + P + Sbjct: 524 HDKQIPFLYRIHPEPDIERLEKLFRILATTDLACQLSGSPDAKKLGGILEEAENTPQTFL 583 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + M+LRSM QA Y PE HFGLA Y HFTSPIRRY DL +HRA+K+ L Q H Sbjct: 584 ISRMVLRSMMQAKYSPEPGEHFGLASPLYCHFTSPIRRYADLLVHRAVKFALGDTQKH-- 641 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 G +++ + + C+ ER A EA R++ L C + G +F+ +++ + Sbjct: 642 --IPFG------QQLFSIAEQCNSHERVAQEAEREITKRLSCLVLQGDEGKIFEAIVTGI 693 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 T F FFV L + I+G+V ++SL +D++ ++Q Q L+G +G+ + LG R+ V+V +VN Sbjct: 694 TDFAFFVELISMPIEGMVRLASLKDDWFEYNQDRQELLGVRTGKRFYLGQRLTVKVSSVN 753 Query: 715 MDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKK 774 + +I+F L + T+ E KKG + R++ +KV +S+FR KK Sbjct: 754 ILRLEIEFEL-------HMMQPTSGENIKKGRTKARNYYRQK--EKVR-SSNSSFRKRKK 803 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 359 bits (921), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 229/696 (32%), Positives = 360/696 (51%), Gaps = 38/696 (5%) Query: 45 HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---ERLDLVKGTVIGHRDGYGFLRV 101 H +G E ++ L + G + R + +P ++L V G V GY ++ V Sbjct: 45 HFKGNLSKENIKEALADLVIQGAIERRDRGKFLVPFNIDKLPYVVGKVDYVNPGYAYVVV 104 Query: 102 EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR--KGRREARIVRVLVPKTSQIVGRYFTE 159 + D+ + + + + GD V + KG R+V +L ++ VG + Sbjct: 105 GDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGHPVGRVVEILEQNKNKWVGTVQQQ 164 Query: 160 AGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMG 219 V FV+P R+ +DI + P+ + A+ VVVEL +RPT G+I+EV G Sbjct: 165 GSVTFVLPISRRMHYDIFVRPENLKKAKHNDRVVVELVKRPTTSKNPEGRIIEVFGPMGE 224 Query: 220 TGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDF 279 + + + +P +P+ V + + + ++P+E A R D R++ +TID EDA+DF Sbjct: 225 NDVEIHTIMAEFNLPTQFPENVLAETSAISIDIPKEEIAARKDFREVFTITIDPEDAKDF 284 Query: 280 DDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSN 339 DDA+ + G + V IADVSYYV+ ++ +D+EA RGTSVY + IPM+PE LSN Sbjct: 285 DDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQEAFERGTSVYLVDRTIPMIPERLSN 344 Query: 340 GLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH-ILQGDQDLRE 398 LCSL P DR + +G L F E V+ S RL+Y + I Q L E Sbjct: 345 ELCSLKPHEDRPAFSAVFELDKQGSLHHEWFGETVIHSDQRLSYEEAQQAITQPTHSLHE 404 Query: 399 QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKL 458 Q + L+NL K L R + G I+F++ KF + + R I D+H+L Sbjct: 405 Q-------ITTLNNLAKKLRADRFKSGAINFDTPSVKFQLDKQGRPLSILPKVSEDSHRL 457 Query: 459 IEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAITSFRSVLAELGLELPGGNK 513 IEE M+LAN A V + K+ ++R HD+P+ E + F + + G + K Sbjct: 458 IEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQPNLERLGDFALFVKQFGYSI----K 513 Query: 514 PEPRDYAE----LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 EP++ A+ L E +A +P+A ++QT+ +R M +A+Y E + HFGLA + Y HFTSP Sbjct: 514 AEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKALYTTEAKPHFGLAFEHYTHFTSP 573 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR +K L G +++ + QH S ER A +A R Sbjct: 574 IRRYPDLLVHRLLKKYLK------------GEFYFEEAIYEKKCQHASERERVAADAERA 621 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + + + M G KGVISS+ +G +V L D+ +G++ +S L +DYY D+ G Sbjct: 622 SIKYKQVELMQTLQGKRLKGVISSLMEWGIYVELLDILCEGMIRLSDLTDDYYVLDKKGF 681 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +L+GE + + Y+LGD VEV ++A ++ +R +D L+ Sbjct: 682 KLVGERTKKVYQLGDLVEVEIKACDISKRTVDLWLV 717 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 358 bits (918), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 266/772 (34%), Positives = 382/772 (49%), Gaps = 92/772 (11%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY- 76 +PSRE IL + + AS+ ELA ++G+ ++E L+ L+ +E++G L +R+ Sbjct: 39 LPSREVILRFIADHPQKASKRELAKAFGLKGDSRVE-LKHLLQELEQEGMLQKSRKSLIR 97 Query: 77 --ALPER--LDLVK----GTVIGH-----RDGYGFLRVEGRKDDLYLSSEQMKTCIHG-- 121 ALP LD+ G +IG D V R+ + K + G Sbjct: 98 PGALPPVTVLDITTRDKDGDLIGRPAEWPEDQGVAPAVAIRQQSPAGRQGKGKAPVAGLG 157 Query: 122 DQVLAQPLGA-DRKGRR-EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 D++LA+ A DR G ARI++V+ + +G + T G G + R D++I Sbjct: 158 DRILAKIFPAVDRGGPAYTARIIKVIDRRRGAAMGVFRTAPGGGGRLLPIERRGEDMVID 217 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 PD GA IP+++P Sbjct: 218 PDFTGGA--------------------------------------------DGIPHVFPP 233 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGWRL 295 AV + K + R D RD+PL+TID DA+D DDAVY E GG + Sbjct: 234 AVMAEAEAAKPAT----MSHREDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPGGVIV 289 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 VAIADVS+YVRP++PLDREA RG SVYFP +V+PMLPE +SN LCSL +DR + Sbjct: 290 TVAIADVSWYVRPNSPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRPALAV 349 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLY 414 M+ SS+GR G+ F+ +M S A+L+Y + + G+ D ++ P+++ L+ L Y Sbjct: 350 RMSFSSEGRKIGHTFHRIMMKSAAKLSYQQAQAAIDGNAD--DKTGPMLEPILKPLWRAY 407 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 V+ + R+ R + + E K + + ++R+ R DAHKLIEE MI AN++AA + Sbjct: 408 AVMKRGRDRRQPLELDMPERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAAAETL 467 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 EK ++ ++RIHD P+ R LA LG+ L G + +L M Sbjct: 468 EKKRQVLVYRIHDGPTLAKQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTAHQTM 527 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + M+LRS QAIY PEN GHFGL L YAHFTSPIRRY DL +HRA+ L + Sbjct: 528 VNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGE---- 583 Query: 595 NTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 GG E L + S ERRA A R+ D L + +VG F G +S Sbjct: 584 -----GGITPDEEAALDDIAAEISTFERRAMAAERETIDRLIAHHLSTRVGEEFAGRVSG 638 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV-EA 712 VT G F+ L D DG + +S+L +DY+ +D+ Q L GE +G YRLGD V V++ EA Sbjct: 639 VTKSGLFIALPDYGADGFIPISTLGSDYFIYDEAHQALSGERTGLGYRLGDSVTVKLAEA 698 Query: 713 VNMDERKIDFSLISSER----APRNVGKTAREKAKKGDAGKKGGKRRQVGKK 760 + + + F ++S R A R+ K R KG KK G R G++ Sbjct: 699 IPL-AGALRFEMLSEGREMPTAVRSFHKAGRR--DKGQVRKKPGTRPPRGRR 747 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 251/758 (33%), Positives = 388/758 (51%), Gaps = 49/758 (6%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 P++E IL + + +S+ E+A +++G+ ++ LR LR + +D + +R+ Sbjct: 20 PNKEEILSFINENPNHSSKREIAKAFNLKGDSRI-WLRDILREL-KDQNPISKQRKRAIN 77 Query: 79 PERLDLVKGTVIGHRDGYG-FLRVEGRKDDLYLSSEQMKTCIH--------GDQVLAQPL 129 +L V I RD G F+ +D + ++ + H GD +L + Sbjct: 78 KGKLPPVTLVKISGRDKDGSFIAQPLEWEDSPKPNIEIHSFHHIKGSSIGVGDHILVKVF 137 Query: 130 GADRKGRREA-------RIVRVL--VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 R E+ RI+R + PK++ V R F E + P D R + ++++ Sbjct: 138 ---RNKNSESSSPLYMGRIIRKIDVSPKSAFAVVRKF-ENNQWRLDPID-RKTNELIVEM 192 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 M +G +V VE+ + K+ KI VLG IA+ + IPYI+P++ Sbjct: 193 SPEMKIEIGDLVEVEIKKNTGYGLKS-AKIKNVLGHIKSEKTLSMIAILSKGIPYIFPES 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKR----GGGWRLW 296 V +QV +K + R D R LP +TID DA+D DDAVY K + GW + Sbjct: 252 VLEQVKHIKAANMD----NREDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDGWIII 307 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADVSYY++ + LD+EA RG SVYFP V+PMLPE LS+ LCSL +R + Sbjct: 308 VAIADVSYYIKTGSALDKEALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPALAVR 367 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYK 415 M + G + F+ ++ A+L+Y +V ++G+ + E+ A L + L+ L Y Sbjct: 368 MIFDANGNKRKHSFHRTMIRVRAKLSYQEVQLAIEGN--INEKTAALFESILQPLWEAYT 425 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L AR R + E E K I + I+ + + +AH+LIEE MI ANI+A+ ++ Sbjct: 426 CLKAARNRRQPLELEIAEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAASETLK 485 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 + +P ++RIH+KPS RS L LG+ L G++ +L V + P E++ Sbjct: 486 QHHQPLIYRIHEKPSLAKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQKELI 545 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 ++LRS QA Y+P+N GHFGL L +Y HFTSPIRRY DL +HRA+ L + Sbjct: 546 NQVILRSQSQAEYNPKNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGNDQLTD 605 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 T E + + ++ S+ ERRA A R+ D L ++ +++G +F G IS VT Sbjct: 606 TQE--------QNLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIGRIFTGRISGVT 657 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G F+ LD L DG VH+S+L NDYY FD+ L+G+ S + Y+L D VEV++ V Sbjct: 658 KAGLFISLDKLNTDGFVHISTLKNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLITVQP 717 Query: 716 DERKIDFSLISSER----APRNVGKTAREKAKKGDAGK 749 + F L++ R +P + K +K K GK Sbjct: 718 FAGALSFELLTKPRPIKFSPTSYHKNKLKKQKHTFYGK 755 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 229/659 (34%), Positives = 344/659 (52%), Gaps = 25/659 (3%) Query: 83 DLVKGTVIGHRDGYGFLRVE---GRKDDLYLSSEQMKTCIHGDQVLAQPLG--ADRKGRR 137 +++ G G G+GFL E R+DD ++ GD+V A P +GRR Sbjct: 8 EIITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIPWEEGRR 67 Query: 138 EARIVRV------LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 A +VRV V T + +GR ++ PD +L I I + G R+G Sbjct: 68 TATVVRVTERANRFVTGTVEKLGREL------WMRPDSDKLPGPIKIS-GKAKGVRIGEK 120 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 + VE+ T +T +G + E G + L +EI +P AV A E Sbjct: 121 IAVEMLGYGTAKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPRE 180 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 V ++A GR DLR+ ++TIDG ++D DDAV E+ G W L V IADVS+YV+ +P Sbjct: 181 VEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKSP 240 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EA RGTSVYF +VIPMLP LSNG+CSLNP VDRL + C MT+++ GR + Sbjct: 241 LDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHTIC 300 Query: 372 EAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V+ S R+TY +L G D DL ++Y ++ L ++ L +VL+K R+ RG + E Sbjct: 301 KSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLDLE 360 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 + E+ I + + I+ ++ ++ LIE M+ AN AR + +PA++R+H+KPS Sbjct: 361 TSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEKPS 420 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + +++LA G + + ++LE +P+A ++ TM+LRS+ +A YD Sbjct: 421 QDKAEGLKTMLAPFGYTF---QEADSFALQKILEDTKGKPEAPIISTMVLRSLMKARYDV 477 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM- 609 +N GHFGLA + Y HFTSPIRRYPDL +HR + +LA E + N +T + M + Sbjct: 478 QNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADE-ANPANVGKTMPWEKRMASVA 536 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 + S E A A R++ ++ML VG G +S VT FG FV L ++ Sbjct: 537 ARAADQSSQREVAAQNAEREIEKLYMAEYMLAHVGETMVGTVSGVTKFGLFVMLPS-GVE 595 Query: 670 GLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 GL+ +L D+Y D L GE +G+ + G + V A + +I F L E Sbjct: 596 GLISAEALPRDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAADPGSGQITFHLSGEE 654 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 213/671 (31%), Positives = 352/671 (52%), Gaps = 33/671 (4%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRV 144 +GTV R G F+ +EG++ D+ + + + T + GD+VL + + +GR E I + Sbjct: 18 RGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDVIKQGKNEGRMEGVITEI 77 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + K + G G F++P+ DI IP + + A+ G VV + + Sbjct: 78 IKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPANSLKDAKNGDKAVVRVVAWGEKTR 137 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 K VG++VEVL + +A+ L P +P V +++ ++E + E R D R Sbjct: 138 KPVGEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLKELNEIQENIDAEEVKKRKDFR 197 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 TID DA+DFDDA+ K RG + + V IADVS+YV+P T LD+EA R TSVY Sbjct: 198 KTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQPDTALDKEADKRATSVY 257 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 P +V+PMLPE +SN LCSL P D+L ++ KG + V+ S R TY Sbjct: 258 LPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKGEIKENWIGRTVIHSDHRFTYE 317 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 +V +++ + P + L+ + + L K R E G I+F S+E +F + + Sbjct: 318 QVQEVIETGE------GPYKDEVLLLNKISQTLRKVRFENGAINFSSQEVRFQLDENAKP 371 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAK------EPALFRIHDKPSTEAITSFR 498 I + +AH+LIEE M+LAN + A +V + P +R+HD P E + F Sbjct: 372 IGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVPFPYRVHDTPDEEKLKMFS 431 Query: 499 SVLAELGLELPGGNKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + + G +L N + R + E+L+ +P+ +L+T+ +R+M +A Y ++ GH+G Sbjct: 432 AFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLGIRTMAKAAYTTDDIGHYG 491 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L + Y HFTSPIRRYPD+ +HR ++ L+ + + ++M + +H S Sbjct: 492 LGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDI-------------HPDKQMEKKCKHSS 538 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 ER+A EA R + + ++M +G F GV+S V FGF+V D +GLV + S+ Sbjct: 539 EMERKAMEAERAANKYKQVEYMQQYIGEEFDGVVSGVAHFGFWVETVDTKCEGLVSIHSM 598 Query: 678 DN-DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV-- 734 D + +D+ L+G +G+ R+GD+V ++V A N+ +R++D+ L+ E + ++ Sbjct: 599 STKDEFVYDEQEYSLVGSFTGRKIRIGDKVRIQVVAANLVKRQLDYDLVEPEGSAPDIFA 658 Query: 735 ---GKTAREKA 742 G++AR+ A Sbjct: 659 GGRGRSARKPA 669 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 212/668 (31%), Positives = 352/668 (52%), Gaps = 32/668 (4%) Query: 56 RRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQM 115 ++ L A E G + R Y LPE+ VKG + +GFL + G +++ + Sbjct: 85 KQLLNAWEESGDIYLKRNGRYTLPEKEGFVKGEISISSGNFGFLDINGEAS-VFIPGAYL 143 Query: 116 KTCIHGDQVLAQPL--GADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS 173 T ++GD VL + L +D +RE + +V+ + IVG + GFV P +S Sbjct: 144 NTAMNGDTVLVRILKQSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNS--P 201 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 DI IP I GA+ G +V V++ K G IV +LG T + L I Sbjct: 202 KDIYIPKKLIRGAKTGDLVAVKVDFWGDEERKPEGAIVSILGSPKDTEALISSLLLNEGI 261 Query: 234 PYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 +P V Q++ + E++ +E K R DLR L ++TIDG DA+D DDAVY EK G + Sbjct: 262 EEKFPNEVLQELDKIDEDISDELK-NRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-Y 319 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 +L+V+IADVSYYVR +T LD +A RG S+Y +VIPMLP LSN LCSLNP D+L Sbjct: 320 KLFVSIADVSYYVRENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTF 379 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD------LREQYAPLVKHL 407 EM + +G++ FY++V+ S R+TY V IL+ +++ L ++Y + + L Sbjct: 380 TVEMDLDKRGKVVKNDFYKSVIKSKYRMTYENVNTILEKNEESEEYKVLYDKYRKIDEML 439 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + + L K++ ++ RG I FE E K + + + ++ I R +A ++IE+ M++AN Sbjct: 440 KNMLELSKIIRNNKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIAN 499 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA 527 + A + + PA++R+H+ P + + L + G L G + P + ++E Sbjct: 500 ETVAEKLFWEEIPAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTT 559 Query: 528 DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI----- 582 P+ ++ ++LR+M++A Y +N GHFGLA + Y HFTSPIRRY DL +HR + Sbjct: 560 GLPEGYLIHKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIE 619 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 K++ KE+ G E + S ER AD+ D ++M D+ Sbjct: 620 KFMNEKEKAKYGANFEA------------IASSISRTERVADKLEEDSVKIKLIEYMQDK 667 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +G V+ +S + F+ L++ I+ + +V++ D + +D+ +++ + + ++Y + Sbjct: 668 IGQVYIARLSGMNKNKIFMELEN-HIEVVYNVTTA-RDNFIYDEENFKIVDKRNNESYTM 725 Query: 703 GDRVEVRV 710 G ++V + Sbjct: 726 GSTMKVSI 733 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 251/722 (34%), Positives = 383/722 (53%), Gaps = 57/722 (7%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 +P + EL+ L +++ E LR LR +E G++ R+ Y LP+ DLV G + H Sbjct: 27 RPLDKVELSKALRWPSDQRAE-LREALRELETAGEIARIRKDRYVLPQTADLVTGILQVH 85 Query: 93 RDGYGFLRVE--GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR----EARIVRVLV 146 +G+ L E G KD +++S+ + T +H D+V+A+ + R+ RR EAR++++L Sbjct: 86 ANGHAHLLSETPGVKD-VFISAPNLGTAMHSDKVVARLMHEGREQRRGGAQEARVIKILE 144 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 IVG + +V+PDD RL +I + P+ GA++G VVV + +R Sbjct: 145 RANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPEP-KGAQVGDKVVVRFEEWESRHVNP 203 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 G+++EVLG G+ + +R +++P +P AVE++ + E V + A R D R Sbjct: 204 EGEVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVEREAEKIFETVHPDEIARREDCRGQ 263 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 +VTID +DA+DFDDA++ E+ GWRL V IADVS+YVRP PLDREAR RG S Y Sbjct: 264 FIVTIDPDDAKDFDDAIHVERL-ARGWRLGVHIADVSHYVRPGHPLDREARKRGNSTYLA 322 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 +VIPMLPE LSNG+CSL P V+RL + G++ +F +V+ S ARLTY + Sbjct: 323 DRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDESGKIRKARFARSVIKSAARLTYRQA 382 Query: 387 WHILQ-------------GDQDLREQYAPL---------VKHLEELHNLYKVLDKAREER 424 IL+ G L + PL VK EL +L L K R Sbjct: 383 LAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPELRERVKLAWELASL---LRKNRFAA 439 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + + E K + + R R+E+ + +H+L+EE M+ AN A+ ++ K P ++R Sbjct: 440 GSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEFMLAANEVVAKALKDRKIPTVYR 499 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 IH+ P + + +R + G G+ + R+ LL + +P+ L+ LL+S+K Sbjct: 500 IHEDPDPDRLADYRELAISYGFR--AGDLTQRRELQRLLAATRGKPEEYALKLGLLKSLK 557 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 +A Y + GH+GLA +Y HFTSPIRRY DL +HRA L ++ G G E Sbjct: 558 RARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHRA---LAGEKLGGVGAVGE------ 608 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG----NVFKGVISSVTGFGFF 660 + H S ER + +A RD K +F Q+ + ++ V +G Sbjct: 609 -------IAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAIVVDVRSYGLV 661 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L D I GL+HVSSL +D+Y+FD R +G +TY++GD ++V V V+ +R+I Sbjct: 662 VELPDCLITGLIHVSSLPDDFYQFDSTRLRFVGRRKNKTYQIGDVLQVIVSRVDAYKRQI 721 Query: 721 DF 722 DF Sbjct: 722 DF 723 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 220/679 (32%), Positives = 353/679 (51%), Gaps = 46/679 (6%) Query: 104 RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-------EARIVRVLVPKTSQIVGRY 156 R DD+++S++ + + GD+V R G R E ++ V+ +++VGR Sbjct: 147 RDDDIWVSTDDLAGAVDGDRVRVVRFQDSRNGGRNAARRRIEGKVASVVERGRTELVGRI 206 Query: 157 FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP---TRRTKAVGKIVEV 213 GFVVPD ++ DI IP +++ GA G V+V LT+ P + + + G+++ V Sbjct: 207 EVWPTYGFVVPDSKKIYDDIFIPKEKLGGANDGEKVIVRLTKFPDPNSSKQRFEGEVITV 266 Query: 214 LGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDG 273 LG + L +P +P VE++ + ++ ++ A R D+RD+ TID Sbjct: 267 LGVAGQNNTEMHAILAEFGLPIHFPADVEKEAEAIPTKILKKDLAKRRDMRDVTTFTIDP 326 Query: 274 EDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPML 333 DA+DFDDA+ + G + + + IADV++YV P + L+ EA R TSVY +V+PML Sbjct: 327 IDAKDFDDALSVQILDNGNFEIGIHIADVTHYVLPGSKLEEEAFKRATSVYLVDRVVPML 386 Query: 334 PEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD 393 PE LSNGLCSL P D+L ++S ++ F + S+ R Y + IL + Sbjct: 387 PEKLSNGLCSLRPNEDKLTFSAVFEMTSDAKIVNEWFGRTAIHSNRRFAYEEAQDILNSN 446 Query: 394 QDLREQYAPLVKHLEELHNLYKVLDKAREER---GGISFESEEAKFIFNAERRIERIEQT 450 ++EEL L ++ K R+ER G I+FE+ E +F + + Sbjct: 447 SG---------DYIEELRLLNELAYKLRDERFKNGAINFETVEVRFRLDENGVPLAVYPK 497 Query: 451 QRNDAHKLIEECMILANISAARFVEK--------AKEPALFRIHDKPSTEAITSFRSVLA 502 R D +KLIEE M+LAN A FV + ++R+H+ P+ + + SF Sbjct: 498 IRQDTNKLIEEFMLLANKRVAEFVHSLSKRNKGGEENTMVYRVHESPAEDKLRSFSDFAR 557 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 +LG +L ++ + S+ +P+A MLQ + +R+M +A Y E+ GHFGLA + Sbjct: 558 KLGYKLNVDDEHLSNSMNRFMASIEGKPEANMLQQLAVRTMSKARYSTEDLGHFGLAFKR 617 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y+HFTSPIRRYPD+ HR +++ L K G +E + +H S E+ Sbjct: 618 YSHFTSPIRRYPDMMAHRLLQHYLDK------------GKPADRDEYEEKCRHSSEREKM 665 Query: 623 ADEATRDVADWLKCDFMLDQVGN-VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 A +A R + + +FM + VF+GVIS VT FG FV + + +GLV + L +D+ Sbjct: 666 ASDAERASIKYKQVEFMSRMAPDQVFEGVISGVTEFGIFVEITENSCEGLVRMQDLSDDF 725 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 Y FD+ R++G + + Y GD V VRV+ N+ R +DF+L+ S++A R + K Sbjct: 726 YEFDKDNYRIIGSRTKKMYTFGDAVVVRVKETNLARRSMDFALV-SDKAGRATDAGSGRK 784 Query: 742 AKKGDAGKKGGKR--RQVG 758 + + D+ + GG R+VG Sbjct: 785 SGRSDSSRLGGSSSTRKVG 803 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 351 bits (901), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 222/690 (32%), Positives = 362/690 (52%), Gaps = 23/690 (3%) Query: 52 LEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLS 111 L+ L+ ++M R + + Y + + + G V +GF+ +D ++S Sbjct: 34 LDKLKNTAKSMIRQRTIFKAKSDLYYISDIRTVFTGKVATLSRTFGFVTNLATGEDCFVS 93 Query: 112 SEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR 171 ++K + GD V+A+ + A + R V ++ + ++ G + G V DS Sbjct: 94 GGKLKGAVPGDTVIAREIAAKTEQRSATAEVLAVLDVSEELFGGVIVKEGKMLKVQPDS- 152 Query: 172 LSFDILIPPDQIMGARM----GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA 227 + PP I+ + G V+ + +R ++ + IV VLG + A + Sbjct: 153 ----LGCPPLTILKVKEQIKEGDKVLFSIRKRGEHHSEHIVDIVRVLGSSEYAKSATEAY 208 Query: 228 LRTHEIPYIWPQ-AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE 286 L + IP + + A+ Q + + E+ A R+DLRDLP+ TIDG D +D DDA+ E Sbjct: 209 LIQNNIPVDFSEEALNQAKQYVNAVIDEKQTAKRLDLRDLPIFTIDGADTKDIDDAISIE 268 Query: 287 KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP 346 + GG ++L V IADVS+YV +PLD +A RGTSVY +VIPMLP+ LSNG+CSLNP Sbjct: 269 RTEGG-YKLGVHIADVSHYVTEGSPLDNDAFERGTSVYIADKVIPMLPKELSNGICSLNP 327 Query: 347 QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG--DQDLREQYAPLV 404 VDRL C M +S KG + YKF + V+ S + Y++V IL G + ++ +Y ++ Sbjct: 328 GVDRLAFSCLMEISDKGTVKKYKFAKTVIRSRVQGVYSEVNSILDGTANAQIKRKYKDVI 387 Query: 405 KHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMI 464 + ++ L ++L K R++RG +S E+K I + I+ + + +IEE M+ Sbjct: 388 DCIPVMNELAQILIKKRKDRGAPDIKSSESKVICDENGICIDIKPRIQGVSEGIIEEFML 447 Query: 465 LANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAELL 523 +AN SAA+ K + P ++R+H+ P E I S ++ L LG+ G N K E +++A+LL Sbjct: 448 MANNSAAKVGMKKEIPFVYRVHENPPAEKIESLKTTLEALGVNPLGINEKAEAKNFAKLL 507 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 E AD P ++ ++LR+M +A Y + GHFGL ++ YAHFTSPIRRY DL++HR + Sbjct: 508 EETADDPKNIIINRIVLRTMAKAKYSEQPIGHFGLVMKEYAHFTSPIRRYADLSIHRILT 567 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 +++ +G + G + ++ + E A A R D+ ++M + Sbjct: 568 DYVSR-KGADKLKKKYGEFS------VKAAAQATKTELSAVAAERSCEDFYAAEYMKKHI 620 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F G+IS V G G FV L + ++G + V SL +Y+ G L +G Y +G Sbjct: 621 GEEFDGIISGVIGSGLFVELPNT-VEGKIDVRSLSENYFEVRN-GIALYDGVAGTMYTIG 678 Query: 704 DRVEVRVEAVNMDERKIDFSLISSERAPRN 733 D+V V+ N++ +IDF LI + N Sbjct: 679 DKVRVKCINANVNLGQIDFELIKVYKDASN 708 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 219/649 (33%), Positives = 338/649 (52%), Gaps = 27/649 (4%) Query: 95 GYGFLR---VEGRKD---DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPK 148 G+GF+R V R D D+++ + +GD V + + R R+ IV +L Sbjct: 210 GFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDIVRVRLVSGGRSLRKSGEIVEILERD 269 Query: 149 TSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVG 208 T Q VG Y + G G V D + I + GA G VV+E+ + P+ + Sbjct: 270 THQFVGVYQEQRGSGVVEVDGRVFAVPISVGDPGAKGAAPGDKVVIEMVRFPSHTHEGEA 329 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP--EEAKAGRVDLRDL 266 I EVLG G+ +R +E+P +P+AV +A +EE +E+ R D Sbjct: 330 VITEVLGARGTPGIDTLSIMREYELPEAFPEAV---LAASREEAEKFDESIGDRRDFTKT 386 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 ++TID DARDFDDA+ K G ++L V IADVS++V+P + LDREAR+R TSVY P Sbjct: 387 TIITIDPVDARDFDDAISLTKLESGNYQLGVHIADVSHFVKPKSVLDREARDRATSVYLP 446 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 +V+PMLPE++SN L SL P R + S +G +FY + + S R TY +V Sbjct: 447 DRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSPEGTPLHSEFYLSAIKSCRRFTYEEV 506 Query: 387 WHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE 445 L Q +++ P V L +H L +L + R ERG I E K + + + Sbjct: 507 DDYLADRQAWKKKLKPQVHELLGVMHELAMILRRRRLERGAIELSLPETKIDLDKKGEVS 566 Query: 446 RIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG 505 ++ ++H++IEE M+ AN + AR + + + P L RIH+ P + + ELG Sbjct: 567 GAHLSKNTESHQIIEEFMLAANEAVARHLNEKELPFLRRIHENPDLRKLQVLTKFVRELG 626 Query: 506 LELPGGNKPEPR-DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 +E + E R + +++ VA P+ + +LR+M++AIY P GH+ L + Y Sbjct: 627 IEC---DSLESRFEIKRVIKEVAGAPEEHAVNYAVLRAMQKAIYSPAVEGHYALHSEHYC 683 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRYPDLT+HR ++ L+ ++ ++ + L +HCS E+RA Sbjct: 684 HFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQ-----------VLLAEHCSEREQRAQ 732 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 A RD+ ++ +VG+ VI+ V FG FV DL +GL+H+ SL++DYY+F Sbjct: 733 AAERDLIKVKLLGYLSKRVGSEMDAVITGVEEFGIFVMGIDLPAEGLIHIQSLEDDYYKF 792 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 D L G +G +RLGD + V V V++D R++DF + ++ R Sbjct: 793 DSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFRFVGRLKSDRT 841 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 212/653 (32%), Positives = 338/653 (51%), Gaps = 32/653 (4%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVR 143 V GT+ ++ G +++VE DD+++ S+ +K + GDQVL + KG++ E ++ Sbjct: 86 VSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLI--VTYHFKGKKLEGSVLE 143 Query: 144 VLVPKTSQIVGRY--FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 V+ + VG + GFVV D ++ DI +P +I GA+ G VVV++T + Sbjct: 144 VIKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFVPKGKIGGAQDGDKVVVKMTDWKS 203 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 G+I++VLG + L + +PY +P VE++ + + + A R Sbjct: 204 GEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEADDIDRTIHDSEVAKRR 263 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 D+R + TID +DA+DFDDA+ +K G W + V IADVS+YV+P T LD EA +R T Sbjct: 264 DMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHYVQPGTLLDDEAYDRAT 323 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVY +V+PMLPEVLSN +CSL P D+ + + F V+ S R Sbjct: 324 SVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADVVNEWFGRTVIHSDRRF 383 Query: 382 TYTKVWH-ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 Y + I G DL E+ L + L K+L K R G I+F+ E +F + Sbjct: 384 AYEEAQERIETGTGDLAEEILTLDR-------LAKILRKERIRNGAITFDRSEVRFNLDE 436 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFV--EKAKEPA----LFRIHDKPSTEAI 494 + D++ LIEE M+LAN + F+ + EP ++RIHD P + Sbjct: 437 NSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTANTFIYRIHDDPDPTKL 496 Query: 495 TSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + R + G ++ N K LL+ V + + M++T+ +RSM +A+Y Sbjct: 497 EALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIETLAMRSMSKAVYSTNPI 556 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GH+GL Y+HFTSPIRRYPDL HR +++ L GG + ++ + Sbjct: 557 GHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYL------------DGGKSPNKQDYEEKS 604 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +HCS ER A +A RD +++ FM +G F GVIS V FGF+V++ + +GL+ Sbjct: 605 KHCSAMERLAADAERDSIKFMQVKFMEKHLGEEFTGVISGVADFGFWVQIPENGAEGLIK 664 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + L +D Y +D + G +G ++LGD+V ++V N+ ++++DF +I+ Sbjct: 665 LRDLMDDSYSYDPKNHLVHGARTGNQFQLGDKVRIKVMKANLIQKQLDFKIIT 717 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 257/781 (32%), Positives = 388/781 (49%), Gaps = 58/781 (7%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 +A K +P RE ++ L + A++ ++A ++G ++ LR LR +E G L Sbjct: 20 KAPKPPAGLPDRETLIAFL-RDAGEAAKADIARHFGLKGADR-RALREMLRELEAQGALG 77 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYG--FLRVEGRKDDLYL---------------SS 112 R+ +A L V + RD G ++R+ +DL + Sbjct: 78 KRGRRGFAEAGALPPVGVADVVERDADGDLYVRLTKGGEDLPMVRLVPGKGDAAAGGAPG 137 Query: 113 EQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL 172 + + +Q+ G EAR+++ L +++G V P D + Sbjct: 138 MGDRLLVRFEQL--------ESGETEARLIKRLGQSAHKVLGVIRKVRRETRVEPVDRKS 189 Query: 173 SFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 +L+ + + G +V+ ++ R GK++EV+G+ A IA+ +H Sbjct: 190 KESLLLNEQEAKDLKDGDLVLAQVGTSSGRYGPKFGKVLEVVGNEDDPRAASLIAIHSHG 249 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKK 288 IP + + E + K E GR DLRDLP VTID DARD DDAVY + Sbjct: 250 IPTGFSEDAEAEAHAAKPPTLE----GRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAG 305 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 GGW +WVAIADV+ YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL Sbjct: 306 NVGGWIVWVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLREGE 365 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG----DQDLREQYAPLV 404 +R + M + GR +KF +M S A+L+Y + + G D ++ PL+ Sbjct: 366 NRATLAVRMVFDNDGRKKSHKFVRGLMRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLL 425 Query: 405 KH-LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 L L ++++ K R +R + ES+E + I + I+ I + +AHKLIEE M Sbjct: 426 DPILRPLWAAFRLMGKGRAQRSPLGIESDERRIIIK-DGEIQSITRRASLEAHKLIEEMM 484 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 I AN+ AA +E + P ++R+HD PS E + S L + ++ G P + +LL Sbjct: 485 IQANVCAAESLEAKRTPLIYRVHDTPSQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLL 544 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 + + P A ++ ++LR+ QA Y +N GHFGL L YAHFTSPIRRY DL +HRA+ Sbjct: 545 DDTRESPHAAIINEVVLRTQMQAHYSSDNLGHFGLNLARYAHFTSPIRRYADLIVHRAL- 603 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 + A + G G T + + ++ + + AERRA A RD D F+ D+V Sbjct: 604 -IRALKLGDDGLTDQ------DISQIKDTAEVITHAERRAMAAERDATDRYIAAFLSDRV 656 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F G I+ VT FG FV+LD+ DGLV VS+L +Y+ D L+GE +G+ + LG Sbjct: 657 GATFSGRITGVTRFGLFVKLDETGADGLVPVSTLGEEYFVHDDRMHALVGERTGKRFPLG 716 Query: 704 DRVEVRVEAVNMDERKIDFSLIS-----SERAPR-NVGKTAREKAKKGDAGKKG---GKR 754 VEV++ + F +++ +APR +G AR K KG GKR Sbjct: 717 LAVEVKLREATPVTGGLLFEMLTEALPNDPKAPRPRLGVRARPAVKPRGGLPKGVRRGKR 776 Query: 755 R 755 R Sbjct: 777 R 777 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 245/687 (35%), Positives = 348/687 (50%), Gaps = 23/687 (3%) Query: 56 RRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQM 115 R RL + G + R+ PE G + H GYGF+ +E +++ + Sbjct: 267 RERLHPSQIPGAEITRTRRGETRPEEDLSRTGRITVHPAGYGFVELEDGTGTVFVPARHR 326 Query: 116 KTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFD 175 + GD+V+ KG E R++ VL +++ G ++ PDD R++ D Sbjct: 327 GAALDGDRVVLNTWSG-YKGT-EGRVIEVLSRGRAKLTGTLQRTGRAVYLEPDDPRIATD 384 Query: 176 ILIPP--DQIMGARMGFVVVVELTQRPTR-RTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 P D +++G VVE+ + PT R + VG++V VLG ++ L + Sbjct: 385 YGHVPLIDGPPQSKVGQAAVVEICRYPTHERPELVGRLVRVLGKPDDPRTEIEKILAFAD 444 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 +P +P+ V ++ V + RVDLRD P VTID ARDFDDAV E GG Sbjct: 445 LPTEFPRDVARRGDETSTTVRTRDQVDRVDLRDRPFVTIDPVTARDFDDAVCIEDGPHGG 504 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 R+WVA+ADVS+YV P+DREA RG SVY P +V+PMLP LS G+CSLNP+VDR Sbjct: 505 PRVWVAVADVSHYVEIDDPIDREAAVRGVSVYLPDRVVPMLPLPLSAGICSLNPEVDRCA 564 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELH 411 MV + ++ GR+ F AV+ SHARL Y V L GD + R+ Y P L L Sbjct: 565 MVVRLDLTDDGRVLERDFAAAVIRSHARLDYPGVAAALSGDFRGRRDHYRPWAPALSRLA 624 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAE-----RRIERIEQTQR-NDAHKLIEECMIL 465 L + + R RG + E I +A+ R I R + + A++L+EE MI Sbjct: 625 ALAQRMRTRRRARGALELTLAEPYVILDADEAELVRDIVRSKGAEDVRQAYELVEEFMIA 684 Query: 466 ANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN---KPEPRDYAEL 522 AN + ++ + P ++RIH P + + VLA G++L + +P + Sbjct: 685 ANEAVGKYFAERNLPTVWRIHAPPEPDRLHELLPVLANFGIKLTVEDIEAATKPTGMRRI 744 Query: 523 LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 +E++ +P A L +LRS+KQA Y + GHFGLA Y HFTSPIRRY DL +HR + Sbjct: 745 IEAIEGQPAAASLSFQVLRSLKQAQYSTDPIGHFGLASPFYLHFTSPIRRYADLLVHRQL 804 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC---SMAERRADEATRDVADWLKCDFM 639 K+ L H GG ++ L + C S ERRA E R+ + FM Sbjct: 805 KHYL-----HADGKPSGGGARIPAADIDTLAERCAQISTHERRAVEVEREAVSMYRAYFM 859 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 QVG F G +S+VT FG FV LD F++GL+ + L D + FD RL G SG Sbjct: 860 RGQVGEQFTGRVSAVTNFGAFVELDAPFVEGLIKLDDLGADAFGFDASSMRLRGRRSGLR 919 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLIS 726 LGD V + V V++ R+IDF LIS Sbjct: 920 LGLGDPVTIEVTNVSVARRRIDFKLIS 946 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 348 bits (892), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 221/609 (36%), Positives = 325/609 (53%), Gaps = 36/609 (5%) Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267 G+IV + G IAL +IP +P V + L +P + DLR LP Sbjct: 204 GRIVSIEGHVDDRTNWSLIALAEQDIPIHFPPEVVEAAEALT--LPSDLSPYE-DLRALP 260 Query: 268 LVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS 327 L+TID ++A+D DDAV+ E G+R+ VAIADV+ YVRP +PLD+EA+ RG SVY Sbjct: 261 LITIDPKEAKDHDDAVFAEPI-DEGFRIVVAIADVAQYVRPGSPLDQEAKRRGNSVYLID 319 Query: 328 QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW 387 +V+PMLPE LSNGLCSL DR + CE+ + G ++F+ A+++ H L Y + Sbjct: 320 RVVPMLPEALSNGLCSLKAGEDRTALCCELIIGPNGGRKRHRFFRALINCHRGLAYEEAQ 379 Query: 388 HILQG-----DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 G +DL++ ++ L ++ L+ AR + + + E + + + Sbjct: 380 AAADGRLTDRTRDLKDSV------IDPLWAAWQALETARRKSPSLDLDMPERQILLAEDG 433 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 ++RI + QR DAH+LIE M+ AN+ AA +E A ++R+HD P E I R L+ Sbjct: 434 AVDRIVRKQRLDAHRLIEAYMVTANVCAAETLESANRALIYRVHDVPDEERIDGLRVYLS 493 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 +G LP G +P + +L + D+ + +++ +LR+ QAIY EN GHFGL+L+ Sbjct: 494 SMGYSLPKGQVLKPAKFNHILRAARDKDETDLVALAVLRTQMQAIYSTENLGHFGLSLRR 553 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 YAHFTSPIRRY DLT+HRA+ + A+ G G E + + + +H S+ ERR Sbjct: 554 YAHFTSPIRRYADLTIHRAL--VSARRLGPGGMRAEDEAH------LADVAEHISVTERR 605 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A A R D F+ D+ GN F G IS VT G FV LD+ DG + + SL DYY Sbjct: 606 AVAAERATQDRYLASFLEDREGNDFHGRISGVTRAGLFVTLDETGADGFIPMRSLHTDYY 665 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 + D+ L+G+ SG Y LG RVEVR+ V + + F ++SS A + + Sbjct: 666 QHDEERNALIGQRSGGHYHLGQRVEVRLLEVTPLQGGLRFEMLSSPEAVETAPAASSAEK 725 Query: 743 KKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK---PKAAKKDARKAKKPSAKTQKIAA 799 G G R + G+K P A RG++ + PK+A +D KP A + K A Sbjct: 726 AAKKRGATDGARGRPGQK----PRGAKRGKRGAEDRPPKSAAQD-----KP-ASSAKRAP 775 Query: 800 ATKAKRAAK 808 AT ++A K Sbjct: 776 ATPPRKATK 784 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 348 bits (892), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 215/665 (32%), Positives = 353/665 (53%), Gaps = 39/665 (5%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV------LAQPLGADRK--GRR 137 +G + H +GYGF+ VEG DD+++ ++ + +HGD+V + + + + R Sbjct: 146 QGKLTTHPNGYGFVDVEGFDDDIFIGADMLGQSLHGDEVEVLVTKVPETYVSKQSPHQRC 205 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV---V 194 E IV V+ K + IVG E + PD ++ +I I A+ G V+ + Sbjct: 206 EGLIVNVVSRKLTTIVGTLQRENRRFLLKPDQRKILPEIHISVKDAKKAKDGAKVLAGDL 265 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E + T + +++E+LG + + V R I + Q + ++EE+ + Sbjct: 266 EFLKNGTIQ----ARVIEILGQAGESQVEVSAIARGLGIDETFEQELLTFAEKVREEITD 321 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK-KRGGGWRLWVAIADVSYYVRPSTPLD 313 E R+D+RD + TID DA+DFDDA+ EK GGG+++ V IADVS+YV ++ LD Sbjct: 322 EDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKLGNGGGYKVGVHIADVSHYVPENSALD 381 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EAR R TSVY +VIPMLP LS +CSLNP VDR+ ++ KG + ++F++ Sbjct: 382 KEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPGVDRMAFSVFFNITKKGEVKKFEFHKT 441 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S R TY V I+ + V+ L+ L +L K + R E GG+ FE+EE Sbjct: 442 VIHSKRRFTYEDVQQIIDAGK------GDYVEELQALESLSKTIRAQRMESGGLEFETEE 495 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-------EKAKEPALFRIH 486 +F + + + +R D+H+LIEE M+LAN + A ++ EK P ++R+H Sbjct: 496 VRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLANRTVAAYLTARYAENEKNPHPVIYRVH 555 Query: 487 DKPSTEAITSFRSVLAELGLELPGGNKPE------PRDYAELLESVADRPDAEMLQTMLL 540 P E + + + ++G +L K + R ELL+ V ++ ++L Sbjct: 556 GAPQMERVQVLANFVRKIGFDLKLDRKGKDSATVSSRALRELLQKVHGTNVEFLVNELVL 615 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTET 599 RSM +A+Y N GHFGL + Y HFTSPIRRYPDL +HR + +Y +++ + Sbjct: 616 RSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYPDLVIHRILFEYETTRKKRRKVTPERI 675 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 ++ E+ Q+ + E+ A EA R+ + ++M +GN + GVI+ T +G Sbjct: 676 TEISATITEVCQI---TNEREKIATEAERESVKLKQVEYMSSHLGNTYGGVITGATEYGI 732 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 +VR+ D I+GLVH+ +L +DYY +D+ L+G + ++G R++V+V V++ R Sbjct: 733 YVRMTDFAIEGLVHMRNLKDDYYEYDEATYSLVGRRKHRRLQIGQRLKVKVHEVDLTRRT 792 Query: 720 IDFSL 724 ID +L Sbjct: 793 IDLTL 797 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 246/704 (34%), Positives = 364/704 (51%), Gaps = 47/704 (6%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYG-FLRVEGRKD-----DL 108 L +L A+ +GQLV + +A + L ++G + R G G F+ G D+ Sbjct: 49 LEDQLYALADEGQLVRLQGGLWARADGLRQIRGRYMALRSGAGGFVTPLGDNGQVTGPDI 108 Query: 109 YLSSEQMKTCIHGD--QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGV-GFV 165 ++ Q H D +V P R +E RIV VL ++ G Sbjct: 109 FIHPLQAGDAWHQDMVRVALSPRSHARGKSQEGRIVEVLERGCREVPVHVIHVTGRRALC 168 Query: 166 VPDDSRLSFDILIP-PDQIMGARMGFVVVVELTQRPTRRTKA---VGKIVEVLGDNMGTG 221 P DSR+ FD+ + P+ + G +++V P +R A ++++ +G Sbjct: 169 RPADSRMPFDVSVELPEDMERPSGGSLLLVA----PEKRLAADLWQARLLQSVGREDDIA 224 Query: 222 MAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 + D+ HE+P +P V+ + L AGR D+R LPLVTIDG DARDFDD Sbjct: 225 VQEDLVKLNHEVPREFPPRVQAEADALPSAPRHADMAGREDVRALPLVTIDGADARDFDD 284 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 AV E + GGGW L VAIADVS+YVRP + LD EA RG S YFP+ V PMLP L +GL Sbjct: 285 AVQVEARPGGGWLLRVAIADVSHYVRPRSALDTEALARGNSWYFPTSVEPMLPPALCDGL 344 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV-WHILQGDQDLREQY 400 CSL P DRL M+ E+ S+ G+ +F VM S ARLTY +V +L D+ R Sbjct: 345 CSLRPDEDRLAMLAEIPFSATGQPGKPRFAAVVMRSAARLTYDQVKACLLDRDEQARAAL 404 Query: 401 AP------LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 A ++ LE LY+ L +AR+ RG + F+ E ++ F+ + R+ R+ + R+D Sbjct: 405 AAGPRGQEVLDMLETAFELYRCLREARQRRGSLDFDLPEPEYSFDDKGRLLRVSRRVRHD 464 Query: 455 AHKLIEECMILANISAARFV----------EKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 AH+LIEE MI AN + AR + KEP L+R+H +P E + S L + Sbjct: 465 AHRLIEEFMIAANEAVARHLGGLKADGSPEGAPKEPFLYRVHPQPDPERLESLFDSLEAI 524 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 EL KP +L V ++ + LR+M QA Y PEN GHFGLA ++Y Sbjct: 525 DPELV-PVKPAASALQGILRDVQGSDREFLVGRLCLRAMPQARYQPENEGHFGLASRAYC 583 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRY DL +HRA+K L G G +++L++ + ER A Sbjct: 584 HFTSPIRRYADLLVHRALKASLGLYDG----ALPAG------QKLLRVADQLNRRERDAL 633 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 + R++A L C + +VG F+GV++ V FG FV L+++ ++G++ V L +D+Y F Sbjct: 634 DCEREMARRLACMALEGRVGERFRGVVAGVNDFGLFVELNEMPVEGMIRVEDLGDDWYDF 693 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 D Q L+G+ SG + +G +EV + V+ +++ L+ +E Sbjct: 694 DVRRQCLVGQRSGLCWSMGQSLEVVLAEVH--SGRLEIRLLPTE 735 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 235/704 (33%), Positives = 363/704 (51%), Gaps = 12/704 (1%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 +E + K EK S ++L +L+IE ++ L + + +ER + + + + Sbjct: 5 IEKIFKEEKVLSIEDLKEKLNIESAKEFVELVKNVGKLERKSVVTQLPSEKFLYVKEALE 64 Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV-R 143 ++G + H+ G+ F+ ++Y+ ++ + GD VL + + R IV + Sbjct: 65 IEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDSVYKDDRNLEGIVQK 124 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ-RPTR 202 VL T VG FV DD + I I + G V+VE+T Sbjct: 125 VLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFNLVDGSKVLVEITDYSKVS 184 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 G I++ +G G+ + + H IP +PQ V +Q + +E+ E K D Sbjct: 185 FEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTEKISDEIKLEDKYR--D 242 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 + +VTIDG+DA+D DDA+ K + G +RL V IADVS YV +PLD+EA NRG S Sbjct: 243 CTNEMVVTIDGDDAKDLDDAISVIKTKKG-YRLKVFIADVSRYVTEDSPLDKEAANRGCS 301 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +V+PMLP LSN +CSLNPQV R + C++ ++KG Y Y AV+ S RLT Sbjct: 302 VYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKGFPESYDIYPAVIKSKGRLT 361 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y KV + +++ E+Y V L+ L + RE RG I F+ E+K + + Sbjct: 362 YKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAIDFDKPESKVVVDENG 421 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 + I +R + KLIE+ M+ AN + P ++RIH++P E + F + A Sbjct: 422 EVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIHEEPKMEKLRQFFDIAA 481 Query: 503 ELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 LG G + EP A +L ML T+LLR+M QA Y N GHF LA + Sbjct: 482 SLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQARYSINNIGHFALATK 541 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPDL +HR I+ L G+ ++ ++ + + L + S E+ Sbjct: 542 YYTHFTSPIRRYPDLLVHRMIRTYL-----FNGDVSDQTIDNF-ISRLPDLAESSSEYEK 595 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 RA + R+V KC++ML F+G++SSVT FG F+ L+ I+GLVH+ ++++DY Sbjct: 596 RAVDCEREVDRMKKCEYMLKYQEQTFRGIVSSVTNFGVFITLERSNIEGLVHIKAMNDDY 655 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 Y +DQ L+G + YRLGD V V+V V+++ ++IDF ++ Sbjct: 656 YTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFKIL 699 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 345 bits (884), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 217/633 (34%), Positives = 332/633 (52%), Gaps = 29/633 (4%) Query: 110 LSSEQMKTCIHGDQVLAQPLGADRKGRREARIVR-VLVPKTSQIVGRYFTEAGVGFVVPD 168 L+ + +HGD+V + A KG+ VR VL T +G Y +G VVP Sbjct: 49 LAKHGIHEAMHGDEVQVSLVSA--KGKAPLANVRFVLTRATQTFLGIYHDAGPLGAVVPL 106 Query: 169 DSRLSFDILI-PPDQIMGARMGF---VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAV 224 DSR+ D + P D +G F VVV +T+ PTR++ AV I +G M V Sbjct: 107 DSRIQRDFFVLPEDPSVGRHYVFEGDVVVARITEYPTRKSAAVVTIERRVGSAEDLDMNV 166 Query: 225 DIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK--AGRVDLRDLPLVTIDGEDARDFDDA 282 + + ++ + +P +Q + + + A R DLR+ +T+D DA+DFDDA Sbjct: 167 EATIASYGLATEFPIKALRQAEKISVDADKALAEDASRHDLREELCITVDPADAKDFDDA 226 Query: 283 VYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLC 342 V K G + LWV IADV++YV+ +P+D EAR R S Y +V+PMLPE L N +C Sbjct: 227 VGARKLEDGSFELWVHIADVAHYVKWDSPIDLEARMRTCSAYLVDRVLPMLPEKLCNDVC 286 Query: 343 SLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL------ 396 SL P DRL M +M +SS G++ G +V+ S ARL+Y +V LQGD Sbjct: 287 SLRPAEDRLAMSVKMKLSSSGKILGATAMNSVIRSRARLSYDQVDSYLQGDVSALDSAVS 346 Query: 397 REQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAH 456 RE + + ++ L+ + + ++ RE+RG + FES E + + + + + +R A Sbjct: 347 REDAGAIKEMIDVLNQIRALREEIREKRGSVDFESVETRVVLDENNKPVGVSVRERTQAT 406 Query: 457 KLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG-LELPGGNKPE 515 LIEE M+ AN S A + + + +R+H++PS E++ + L +G LE ++ Sbjct: 407 GLIEEAMLAANESVAHMLSQHDLESAYRVHEQPSPESLKLAITPLVAMGALEPDVASRIA 466 Query: 516 PRDYAEL---LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRR 572 D L LESV + ++ LLR+ K+AIY P N+GHF L +Y HFTSPIRR Sbjct: 467 IGDQTALQEALESVHGTRYSRVVNAQLLRAQKRAIYLPTNQGHFALGADAYCHFTSPIRR 526 Query: 573 YPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVAD 632 YPD+ +HR +K LL + + + + + CS ER+AD A R Sbjct: 527 YPDVIVHRTLKRLLCGQTAARAE----------LSALADICSTCSEQERKADAAARATQK 576 Query: 633 WLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 ++ ++G G I FG F+ LDD + DGL+ V L +++Y +DQ L+ Sbjct: 577 IKLAEYYQSRLGEETWGTIDGCERFGLFITLDDTYADGLLTVRDLGHEWYVYDQETLALI 636 Query: 693 GESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 GES+G+TYR+G RV V++ VN+ +ID +L+ Sbjct: 637 GESTGKTYRIGGRVRVKISGVNVARGQIDLALV 669 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 207/619 (33%), Positives = 326/619 (52%), Gaps = 37/619 (5%) Query: 121 GDQVLAQ--PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 GD+V PL A R R ++V VL + S VGR G ++ +D L IL+ Sbjct: 140 GDRVRVALFPLKARRT--RTGQVVEVLQRRRSTYVGRVVVTKGFSYLHTEDRALDSRILL 197 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 P + + GA+ +V + R + G++VEVLG + L +++PY +P Sbjct: 198 PREALAGAKNNDKAIVRIAHWGAREPEPTGEVVEVLGAAGDNNTEMHAILAEYDLPYSYP 257 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + E+ + E+P E A R D R++ +TID DA+DFDDA+ K GG + V Sbjct: 258 EEAEEAARQIPSEIPSEEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVH 317 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVSYYV P + +D+EA +R TS+Y + IPMLPE L N LCSL P RL C Sbjct: 318 IADVSYYVTPGSVIDKEAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFV 377 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL---QGDQDLREQYAPLVKHLEELHNLYK 415 ++ + Y+ ++ S+ R Y + ++ +GD + + LH+L + Sbjct: 378 LNEAAEVQSYRIGRTIIESNRRYAYEEAQQVIDTKEGDD---------AEVILSLHSLAQ 428 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS-AARFV 474 +L K R +G I+F S+E +F+ +AE R + A++LIEE M+LAN + A F Sbjct: 429 LLRKRRFAQGAINFSSQEVQFVLDAEGRPVDVMARPHGTANELIEEFMLLANRTVATEFG 488 Query: 475 EKAKEPA------LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE--PRDYAELLESV 526 +K + ++RIHD P + + + + G + + ++ ++E+ Sbjct: 489 KKQRNSNGDAKTFIYRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEAS 548 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 D+P+A ++QTM +R+M +A Y EN GH+GLA + Y HFTSPIRRYPDL +HR L+ Sbjct: 549 QDKPEATLIQTMAVRTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHR----LV 604 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 A+ +G+ + E QHCS E+ A +A RD + + ++M ++G V Sbjct: 605 ARYMAGEGSVPQA--------EYEAYAQHCSDQEQVAAKAERDSVRYKQVEYMSTRLGKV 656 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F GVIS+V +GF+V L +GLV + L++D+Y +D+ L+G + + LGD V Sbjct: 657 FDGVISNVAEWGFYVELTHSHCEGLVPMRLLNDDFYDYDEKNFALVGRRYRRKFTLGDTV 716 Query: 707 EVRVEAVNMDERKIDFSLI 725 VR + + R+IDF L+ Sbjct: 717 RVRAIHSDFERRQIDFELV 735 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 213/639 (33%), Positives = 331/639 (51%), Gaps = 25/639 (3%) Query: 110 LSSEQMKTCIHGDQVLAQPLGA-DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPD 168 +++E + + GD+V A L G+ R++ +L T+Q VG Y G G+V D Sbjct: 99 VAAEDAGSALTGDKVSAIILKKRGPNGKIAVRVIDILERATTQFVGEYHESRGKGYVTVD 158 Query: 169 DSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 +SR I + G R G VV+E+ P T +++VLG G+ + + Sbjct: 159 NSRFERPIDVGDPGAKGVRPGDQVVIEMVHFPEFSTPGEAVLLKVLGKRGEPGVDLQSII 218 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 +P +P++V ++ + E+ R+DLRD ++TID ARDFDDA+ ++ Sbjct: 219 YEFGLPDEFPESVLEESRLQAQLFSEDDIGDRLDLRDELIITIDPLTARDFDDAISLKRH 278 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 G W L V IADV+++VRP T LD+EA RG SVY P +V+PMLPEVLSN L SL Sbjct: 279 EDGSWTLGVHIADVAHFVRPGTELDKEAIRRGNSVYLPGKVLPMLPEVLSNALASLQQDK 338 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP------ 402 R + S G + F A + R Y +V +L Q E AP Sbjct: 339 VRFVKSAFIEYSPDGMVKHTSFANAAIKVRRRFAYEQVMPLLLNRQSPGEHPAPEGETVP 398 Query: 403 --LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 + + LE ++ L +L K R RG + E + N + + + + +H++IE Sbjct: 399 EEICQLLERMYELAMILRKRRFSRGALELSLGEVELDCNDDGNVTGAHRALHDASHQIIE 458 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 E M+ AN++ A ++ L R+HD P + +F +A LG +LP + + Sbjct: 459 EFMLAANVAVAEEFDRRGWFFLRRVHDSPDELRMQNFAKFVATLGYDLPRAQ--DRQAIQ 516 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 LL VA +P+A L LLRS+KQA Y PE GH+ LA+ +YAHFTSPIRRYPDLT+HR Sbjct: 517 ALLNEVAGQPEAFPLNYALLRSLKQAEYSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHR 576 Query: 581 AIKYLLA--------------KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 +++++A + + + S ++ QLG+ CS+ ERRA++A Sbjct: 577 LLEHVIADASFTHSVPAAESLNTASDRKKSKSSRADLLSEADLRQLGKQCSLTERRAEKA 636 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 R++ ++ D+VG I+ V FG F + +L +GLVH+S L DYY DQ Sbjct: 637 ERELIKIRLIRYLADKVGLELNATITGVERFGLFCQGIELPAEGLVHLSDLPGDYYDVDQ 696 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + ++G SG+ +RLGD V V+V +V+ +R+++F ++ Sbjct: 697 IAHAVIGRRSGRVFRLGDPVRVQVSSVDPAKRELNFRIV 735 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 213/680 (31%), Positives = 354/680 (52%), Gaps = 53/680 (7%) Query: 98 FLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYF 157 F E D Y+ + + D VL + ++ R +++ + I+G Sbjct: 81 FAFAETISDSFYIGKDDFNGALDMDDVLFEIKSNEK---RFGVVIKSVKRNRDVILGTMK 137 Query: 158 TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK-----IVE 212 + F +P D++++F + + ++ R R +VG+ I+ Sbjct: 138 KDGKKLFFIPYDNKITFKVEYDASNLD---------LKENDRCIGRITSVGERIHVDIIS 188 Query: 213 VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 VLG GM V L + I + Q V ++ + E+ + R+D RD ++TID Sbjct: 189 VLGQADEPGMDVLSVLFVYGIDNDFKQEVLDEIKNVPTEIDQNETKHRMDHRDQYVITID 248 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 GEDA+D DDA+Y E GG+RL+V IADV +YV+P T LD+ A R +SVY +V+PM Sbjct: 249 GEDAKDLDDAIYMEA-LNGGYRLYVHIADVGHYVQPQTALDQSAYERSSSVYMVDRVVPM 307 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG 392 LP+ LSNG+CSL+P VDRL M C++ +S G + Y YE+V+ S R++Y +V Sbjct: 308 LPKELSNGICSLHPNVDRLTMTCQIDISYAGEVIDYNIYESVICSKRRMSYKEV------ 361 Query: 393 DQDLREQYAPLVKHLEELHNLYKVLDKA------REERGGISFESEEAKFIFNAERRIER 446 +P + ++E+ ++ +LD A R + G I F+S E++F+ + E + Sbjct: 362 ------NTSPDLGEVQEMVSM--MLDCARRLQYKRNQAGQIGFDSAESQFVIDHEGNVLD 413 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 I +R +A ++IE M++AN A+ P L+R+H+ P E + L LG Sbjct: 414 IFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDREKMQELSHTLRILGY 473 Query: 507 ELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAH 565 L G + P++ + L+ +P+ ++ ++LRSM +A Y E GHFGLAL+ Y H Sbjct: 474 RLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQEPLGHFGLALEDYTH 533 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRYPDL LH+ IK K + E + ++ G H S ER + Sbjct: 534 FTSPIRRYPDLLLHQRIKQYAVKHDFSKLEKDE--------QFTIEAGLHVSKKERSILD 585 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD 685 A R V K FM +++G + G IS ++ FG FV L + ++GL+HV +L++D+Y FD Sbjct: 586 AERQVEKIKKAQFMSNKIGEEYVGFISGISNFGIFVELPNT-VEGLIHVRNLNDDFYTFD 644 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKG 745 Q+++GE +G+TY +G +++V++ +V+ E ++F +I ++ R + ++ K Sbjct: 645 GPSQKMIGERTGRTYSIGQKLKVKLVSVDDLEHVVNFEIIGQKKMSRRKPDSRKDGFKSK 704 Query: 746 D---AGKKGGKRRQVGKKVN 762 D + KR+ G+++N Sbjct: 705 DRPSESRNTDKRK--GRRIN 722 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 230/716 (32%), Positives = 365/716 (50%), Gaps = 22/716 (3%) Query: 12 EKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFT 71 E Y N I + L K+ P S E +G E +LR +G ++ Sbjct: 19 ESYKNKIVT---FLTAYDKKSMPLSMLESKCRTKKQGRENFTEAFSQLRT---EGVIMMK 72 Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 + AL R +V T+ +GF + + ++ + M + D+VL + A Sbjct: 73 KGMKVALCSRAGVVPATITRLSRTFGFAETD-EGIEYFIPGKCMLGAMPNDRVLLADI-A 130 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 R G E +V +L ++Q+ GR G ++VPD + + ++I + + G Sbjct: 131 SRTGEPEGEVVDILEFGSNQLTGRIEFVDGEPYLVPDTAAKNH-MIISVRESIPFENGDK 189 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V+ E+ R R + KI+ V G + L H P +P V+++ + E Sbjct: 190 VLAEIVYRGRRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKISEG 249 Query: 252 -VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 V + + R DLRD+P+ TID +++D DDAV E+ + G +RL V IADVS+YV+ ++ Sbjct: 250 GVQDYSFNNREDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVKGNS 308 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA RGTS+Y+ +VIPMLP+ LSNG+CSLNP +RL + + + S+G + Y+F Sbjct: 309 ELDKEAMRRGTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNMLSYRF 368 Query: 371 YEAVMSSHARLTYTKVWHILQGDQ--DLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 ++V+ S + Y+++ IL G++ ++RE+YA + L + L L +E R Sbjct: 369 CKSVIRSRVKGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERRHAPE 428 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 E+ E+K I + + +R + ++IEE M+ AN +AA+ + + P ++RIH+ Sbjct: 429 IETTESKLIIDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYRIHEA 488 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P + + +L + GLE P + +P AE+L S E + M+LRSM +A Y Sbjct: 489 PPEAKVENLHELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEAVNLMVLRSMAKAKY 548 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 E GHFGL L+ YAHFTSPIRRYPDL +HR I +LA + +G Sbjct: 549 STEPVGHFGLVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSKRYSGF------- 601 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 + + S AE RA R+ D K ++M +G F+ ISSVT FGF+ L + + Sbjct: 602 AVNAAERSSAAEIRAVTIERECEDCYKAEYMKAHIGETFRARISSVTEFGFYAELPNT-V 660 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +GL+H+ +L Y + + L + +G TY LG V+V AVN+ E IDF L Sbjct: 661 EGLIHIRTLPEGEYDYSE-PVSLTEKFTGTTYSLGMEVDVICSAVNVSEGTIDFVL 715 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 220/714 (30%), Positives = 358/714 (50%), Gaps = 35/714 (4%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY-ALPERLDLVKGTVI 90 E+ + ++A +LHI + + L ++L ++ ++V R Y A+P + V GT+ Sbjct: 43 EESFNYKQIAAKLHITDAPRRDMLVKQLVQLKEKKRIVEIDRGKYQAIPMQHYYV-GTLD 101 Query: 91 GHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD--QVLAQPLGADRKGRREARIVRVLVPK 148 G G++ V+G +D++++ + +HGD +V P +R + E I +VL Sbjct: 102 VSARGNGYVIVDGLDNDIFVAQNFLNKALHGDLVEVYVFPRFRNR-NKMEGEISKVLERN 160 Query: 149 TSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVG 208 + VG FVVP D+R+ D + D++ GA+ G V+V + + +G Sbjct: 161 KVRFVGTVQMHKNFAFVVPTDARMYTDFFVLKDKLNGAQDGDRVIVRIEDWKDKSDSPMG 220 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 + ++LG + L + +PY +P+ VE L + +E A R D+R+ Sbjct: 221 VVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVEAFAKKLDLSITDEEIARRRDMRENLT 280 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 TID DA+DFDDA+ + G + + V IADVS+YV+ T LD EA NR TSVY + Sbjct: 281 FTIDPRDAKDFDDALSFKLLENGNYEIGVHIADVSHYVKEGTILDEEAYNRATSVYLVDR 340 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 V+PMLPEVL N CSL P D+ ++ K + V S R Y + Sbjct: 341 VVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKKAEVVDIWIGRTVTHSSFRFAYEEAQS 400 Query: 389 ILQGDQDLREQY----------------APLVKHLEELHNLYKVLDKAREERGGISFESE 432 +++ + + E Y A +V+ + L+ L + L + R G I+F+ Sbjct: 401 VIEQAK-VGEGYTIPAETSITDKERAIPAEVVEAILTLNTLAEKLRRKRMRLGAITFDKV 459 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E KF + + + +A+KLIEE M+LAN A +V K K+ ++R+HD+P + Sbjct: 460 EVKFDLDENGNPTGVYFKESKEANKLIEEFMLLANRKVAEYVAKMKKTFVYRVHDEPDAD 519 Query: 493 AITSFRSVLAELGLELPGGNKPEPRD-YAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + F +V++ G L N+ D LLE V + + ++ T+ +RSM +A Y + Sbjct: 520 KLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEVKGKKEQNLVDTLAIRSMAKATYTTK 579 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N GH+GLA + Y HFTSPIRRYPD+ +HR ++ L ET Sbjct: 580 NIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYLDNAPSQPEAEYETK----------- 628 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +H S E A A RD +++ +M F GVIS VT +G +V + +GL Sbjct: 629 -CKHSSQMESLAASAERDSIKYMQVKYMEAHKNQQFAGVISGVTEWGIYVEITVNKCEGL 687 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 V + +DYY FD+ L+G+++G+TY+LGD V +RV+ ++ ++++DF LI Sbjct: 688 VRARDIKDDYYTFDEQQYALVGQATGKTYQLGDEVMIRVKNTDLMKKQLDFELI 741 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 250/728 (34%), Positives = 381/728 (52%), Gaps = 42/728 (5%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E +LE K +P +E+ LH G E+ E + L+A+ G L+ + Y L Sbjct: 2 QETLLEFFKKTGRPHRLEEI---LHRFGLEKREA-KAHLKALVARG-LLEKKGSRYFLAN 56 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 R V+G + HRDGYGF+R+ + DL++ GD V A+ + R GR Sbjct: 57 R---VQGPLSLHRDGYGFVRLP--EGDLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGV 111 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMG--FVVVVELTQ 198 + RVL ++VG G ++PD+ L ++ + P+ + G + G VV V + Sbjct: 112 VERVLKRARERLVGTLDFRKGRALLLPDEPNLP-ELPLAPEGLEGLKRGSRIVVQVHYGK 170 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 RP G + LG+ + + + + +P+ V ++ + E+PE Sbjct: 171 RP------YGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELR 224 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R D R L + TIDG DA+DFDDA++ E+ GG+R+ V IADVS+YV+ + LD+EA Sbjct: 225 RREDFRGLRVFTIDGVDAKDFDDAIHVERL-PGGYRIGVHIADVSHYVKEGSLLDQEAFL 283 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVY P +V+PMLPE LSNG+CSL P DRL + + ++ ++ +F E V+ S Sbjct: 284 RGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVRFREGVIRSV 343 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 ARLTYT+V +G L E++A L + L L +L + + + R + G + F E K Sbjct: 344 ARLTYTEVEAFAEG-FGLPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEV 402 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 E + I Q + A LIEE M+LAN A ++ + P LFR+H++P +A R Sbjct: 403 GEEGELHLIPQAE-PKARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLR 461 Query: 499 SVLAELGLELPGGNKPEPRDYA--ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 LA LG LP P+ +A + L + RP+ ++ ++LRS++ A Y PEN GHF Sbjct: 462 QALARLGYTLP----PKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHF 517 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA++ Y HFTSPIRRYPDL +HR +K L + T E + +H Sbjct: 518 GLAMEHYLHFTSPIRRYPDLVVHRVLKAALRR-------TLTPARKARWQEAFPAIAEHA 570 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER+A+ A R++ + + VG F G ++ V FG FV L + ++GLV + + Sbjct: 571 SEMERKAEAAERELTKYYMAKWAELHVGERFLGKVTGVANFGAFVTLPN-GVEGLVRLEA 629 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 L Y + + L+G G+ RLGD +EVR+ N R++D L+ E AP+ K Sbjct: 630 LGP--YTYSEEAMALLG-PKGRRIRLGDEMEVRIAGANPRLRQVD--LLPVEEAPKKT-K 683 Query: 737 TAREKAKK 744 +EKAK+ Sbjct: 684 NRKEKAKE 691 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 240/682 (35%), Positives = 356/682 (52%), Gaps = 40/682 (5%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSE 113 ++ L M G++V + Y L + L + GT+ R G G+L + RK DL++ Sbjct: 47 IKSTLAQMVESGEIV-QMGKSYGLIDNLPRMTGTLDVRRSGVGYLIADDRKQKDLFIHPN 105 Query: 114 QMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYF--TEAGVGFVVPDDSR 171 GD+V+A + +K E R+V VL T +++ R F P DSR Sbjct: 106 NFGGAWPGDKVVAVVDSSRKKDSPEGRVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSR 165 Query: 172 LSFDILIPPDQIMGARMG---FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 + F ++ + G V VE ++ R A+ + LG+ + Sbjct: 166 MPFYTVVDTSDVPNPEKGDILSVAPVEEQEKGIWRCTALRR----LGEERDLATQELLVK 221 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 + IP ++P +Q L + + A R DLR L LVTIDGE A+DFDDAVY E++ Sbjct: 222 TGYSIPEVFPVPALRQAEALPDTPSPQDWAERNDLRKLALVTIDGETAKDFDDAVYVERQ 281 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 G +RL VAIADV++YV +PLD EA RG S YFP V PM PE LSNGLCSL P+V Sbjct: 282 ENG-YRLVVAIADVAHYVPEGSPLDVEALARGNSYYFPLSVEPMFPEALSNGLCSLRPKV 340 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLE 408 RL MV + S G + Y AV+ S ARLTY +V L G D + A L+ L Sbjct: 341 ARLAMVVDTPYSMDGEPGAPRLYNAVIMSQARLTYNQVQAALDGTPD--QDTAELLPMLR 398 Query: 409 ELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ---RNDAHKLIEECMIL 465 + L K+ K R +RG + F+ EA+ R IE I R +H+LIEE MI Sbjct: 399 DAEELAKIFMKRRMDRGCLDFDIPEAQV-----RVIEDIISVHAGTRLFSHRLIEEFMIA 453 Query: 466 ANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL--ELPGGNKPEPRDYAELL 523 AN A ++ + +RIH +P + + + +L+ L LP K + + + Sbjct: 454 ANERVAEYMGARQRVFPYRIHPQPDEKKLETLLRMLSHTSLVDRLP---KEMNQMGLQHI 510 Query: 524 ESVADRPDAE-MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 A D E ++ ++LR+M QA Y PEN GH+GLA +Y HFTSPIRRY DL +HR++ Sbjct: 511 SHAAKGTDIEYLVNRLILRTMMQAQYSPENDGHYGLASVAYCHFTSPIRRYADLLVHRSL 570 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 K L+A E SM ++ + + + ER+A EA R++ + D+ Sbjct: 571 KRLIAGEPEKM-----------SMGDVQGICEGLNALERKAMEAEREIQKRSAILALEDR 619 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +G +GV+S V FGF+V L D+ +DGLV +++LD D+Y FD Q L+G+ +G+T+ + Sbjct: 620 IGEEMRGVVSGVADFGFWVELLDMPVDGLVRLATLD-DFYVFDPERQDLLGQRTGKTFAM 678 Query: 703 GDRVEVRVEAVNMDERKIDFSL 724 G + V +EAV+++ +I+F+L Sbjct: 679 GQTLNVVLEAVSLERVEINFTL 700 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 249/764 (32%), Positives = 378/764 (49%), Gaps = 63/764 (8%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA------ 77 +LE L + +++ E+A L ++G +++ LR+ L+ +E +G + T ++ ++ Sbjct: 9 VLEFLERNPDKSNKREIARGLGVQGSDRV-ALRQILKKLETEGTIARTGKRQFSSVDAPP 67 Query: 78 ---------LPERLDLVKGTVIGHRDG-YG----FLRVEGRKDDLYLSSEQMKTCIHGDQ 123 L E DLV G +G RDG YG + GRK L GD+ Sbjct: 68 PTSIIKFEKLDEHGDLV-GRCVG-RDGLYGPEITCVATGGRKKGESLGI--------GDK 117 Query: 124 VLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 L + A+ I ++ TS ++G + G V P + + L+ Sbjct: 118 ALCKVGKANDSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVEKILS 177 Query: 184 MGARMGFVVVVELTQRPTRRTKAVG----KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 A G +V + L +++K G ++VE++G A IAL TH++P +P Sbjct: 178 KDAETGDIVRISL-----KKSKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEFPV 232 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKKRGGGWRL 295 + + E K R DL D+PL+TID DARD DDAV+ ++ GGW + Sbjct: 233 EIIAEA-----ENATAQKTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIV 287 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 +VAIADV+ YV+ T LD EA RG S YFP +V PMLPE LS CSL R Sbjct: 288 YVAIADVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAV 347 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLY 414 EM S+ G G++F M S A+L+Y + + G D ++ PL++ L+ L Y Sbjct: 348 EMRFSANGNKIGHRFIRGTMRSAAKLSYEQAQAAIDGKPD--DKAGPLLETVLKPLWAAY 405 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 + + KAR R + + E + + + + + R DAHKLIEE MI AN+ AA + Sbjct: 406 ECVGKARTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESL 465 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 EKA P ++R+HD+PS E I + L +G++ G K + +LL + Sbjct: 466 EKANSPLIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHL 525 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + M+LRS QA Y PEN GHFGL L YAHFTSPIRRY DL +HRA+ + A G G Sbjct: 526 VSEMVLRSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVHRAL--IRALSLGPDG 583 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 + + + ++ +H + ERR+ A RD D FM ++VG F+G I+ V Sbjct: 584 LS------DVESKRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAEFQGRIAGV 637 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 T G FV+LDD DG + + L ++Y+ +D+ L+ E S + Y +G V V++E Sbjct: 638 TKAGMFVKLDDSGADGFIPAARLSDEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEAT 697 Query: 715 MDERKIDFSLISSERAPR-NVGKTAREKAKKGDA--GKKGGKRR 755 + F ++S R R ++ K RE+ + G KG K+R Sbjct: 698 PLTGGLLFEMLSEPREAREDLVKPKRERRGRNHPPRGNKGSKKR 741 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 226/753 (30%), Positives = 373/753 (49%), Gaps = 41/753 (5%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY--ALPERLDLVKGTVI 90 +P +A +L++ EE L+ L+R ++ + + G + + A E + V Sbjct: 20 QPVKPKVIAKQLNL-AEEDLKTLKRAIKRLLKKGHIAYGASHLIKRANAENAKAAQTIVG 78 Query: 91 G-HRD--GYGFLRVEG------RKDDLYLSSEQMKTCIHGDQV---LAQPLGADRKGRRE 138 G HR G+GF+R G R D+Y+ +++ +GD V + + G + + + Sbjct: 79 GFHRTAKGFGFVRPLGTPKSAERTADIYVPAKRTSDAANGDTVRIRMFRTRGMNGESKLC 138 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++ ++ +T + VG Y G V D + + I + + GAR+ VV+E+ + Sbjct: 139 GEVIEIVERETHRFVGTYNEAHGQALVQVDGNVFTQPISVGDPGVKGARLDDKVVIEIVR 198 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P+ G IVEVLG G+ + +R +++P +P+A + + + E Sbjct: 199 FPSHFHDGEGVIVEVLGARGAPGVDLLSVMREYDLPEEFPEAALEVAREMADAFDESIGE 258 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R D ++TID DARDFDDA+ K G W L V IADV+++V + LD EARN Sbjct: 259 DRRDETGETIITIDPFDARDFDDAISLTKLDNGHWLLGVHIADVAHFVPEGSALDTEARN 318 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TS+Y P +VIPMLPEV+SN L SL P R ++ + G + + + + S Sbjct: 319 RATSIYLPDKVIPMLPEVISNNLASLQPNKIRYAKTAKIEFTPDGTRVHTEVFNSAIRSV 378 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHL-EELHNLYKVLDKAREERGGISFESEEAKFI 437 R TY +V L +++ P V L ++H L L + R +RG I E K Sbjct: 379 RRFTYEEVDEYLADRDAWKKKLTPPVHQLVGDMHELAMTLRERRFQRGSIELLMPELKLD 438 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + + + + ++H++IEE M+ AN + A + + L R+HD P + + Sbjct: 439 LDNDGAVTGAHVEKNTESHQIIEEFMLAANEAVADKLHNQELFFLRRVHDSPDPRKLEAL 498 Query: 498 RSVLAELGLELPGGNKPEPR-DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + ++G+E + + R + L+ V P+ + LRSMK+A+Y PE GH+ Sbjct: 499 TEFVRDVGIEC---DSLQSRFEIIRALDKVKGLPEQAAVNYATLRSMKKAVYSPEEIGHY 555 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 LA + Y HFTSPIRRYPDLT+HR L ++ Q + M+ G+HC Sbjct: 556 ALASECYCHFTSPIRRYPDLTIHRMYNDLATGKKPVQ-----------DYDAMVAEGEHC 604 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S E+RA A RD+ + + +++G + VI+ V FG FV+ +L DGL+H+ + Sbjct: 605 SQREQRAASAERDLVKIKLLNHLSEKIGMEMEAVITGVESFGLFVQGLELPADGLIHIDA 664 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE-RAPRNVG 735 L +DYY +D+ L+G G +RLGD ++V + V++++R++DF LI E RA + Sbjct: 665 LQDDYYHYDRTTHSLVGNRDGNAFRLGDVLKVSIARVDLEKRELDFRLIEQEARAAGHAA 724 Query: 736 KTAREKAKKG---------DAGKKGGKRRQVGK 759 +R + G +GK K++ GK Sbjct: 725 DNSRRRPTSGRTASDDFSYQSGKPAPKKKNFGK 757 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 360/715 (50%), Gaps = 77/715 (10%) Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 TRR + P + V+G G+GF V+ + + ++ +M GD V PL Sbjct: 8 TRRHPRSNPRGVLSVRGG------GFGF--VQTAEGEFFVPESKMAGAFDGDLVEVAPLP 59 Query: 131 ADRKGRRE----------------ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 + GR++ AR++RV+ +VGRY G VVP+D+ + + Sbjct: 60 V-QSGRKKQPHERKADLRAGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPY 118 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 DI G +V V +T P+R T A G I EVLG AVD+ + H++ Sbjct: 119 DIFTMRADRPDIEDGSLVRVRITTFPSRNTAATGVIEEVLGLADDEHAAVDVVIARHKLE 178 Query: 235 YIWPQAV--EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE------ 286 ++ + E + A L E+ +G DLR+ TID DARDFDDAV E Sbjct: 179 TVFSEGALSEARSAVLDED--GALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCG 236 Query: 287 --------KKRGGG---WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 +RG G WRL V IADV++YV ++ LD +AR R TSVY +VIPMLP+ Sbjct: 237 VGTGIRVVDERGLGVARWRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPD 296 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ---- 391 LS LCSL P R M ++ + + RL Y Y A++ SHARL+Y + +L Sbjct: 297 ELSGDLCSLKPDEVRRTMTADLYLDDRARLVAYDLYPALIRSHARLSYEEAQALLDRCHP 356 Query: 392 -------GDQDLREQ---YAP---LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 +DL + AP L L L L K +RE GG+ F+S EA+ + Sbjct: 357 ERSAEGAESKDLVRRDGACAPGDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVL 416 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + E I+ + DA LIEE MILAN + A+ + AK P+L+R+H++PS +++ + Sbjct: 417 DEEGSPTGIDLRVKTDATSLIEEAMILANETVAKHLRDAKFPSLYRVHEQPSADSLAALV 476 Query: 499 SVLAELG----LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 V + ++ + +LE+ A+RP+ E++ T+LLRSMK+A+Y P+ Sbjct: 477 PVFQDFAWFRDIDQADFIAGDAHVVQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCAA 536 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 H+GLA +Y HFTSPIRRYPDL +HR +K L+ G E + + + + Sbjct: 537 HYGLASGAYTHFTSPIRRYPDLVVHRMLKALI-------GGRPEK--FDQEKSALPWIAE 587 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 H S ER A++A R+ + +++ VG F +S V +G +VRLD+ +GL+ Sbjct: 588 HSSDMERIAEKAARESQEVKLIEYLERFVGQTFSATVSGVATYGAYVRLDNT-AEGLIPC 646 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 +L ++Y+ D V RL G+ +G +YRL R+ V + + + R++DF ER Sbjct: 647 KNLGSEYFALDPVQHRLTGQDTGASYRLAQRLAVVLVSADPRARRLDFRPARDER 701 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 213/634 (33%), Positives = 332/634 (52%), Gaps = 16/634 (2%) Query: 96 YGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLVPKTSQIVG 154 + F+ +E D+++ + + GD VL + R +G E I+ VL K + Sbjct: 78 FAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLEQKNDMVGT 137 Query: 155 RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVL 214 E + FV PDD + + I D GA+ G V VE+ QR TR+ + Sbjct: 138 VRRIEGRLKFV-PDDCP-AISMTIQRDCEGGAKDGDKVAVEILQRGTRQEDHRVGVSMRF 195 Query: 215 GDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE-EVPEEAKAGRVDLRDLPLVTIDG 273 G L +I +P+ V + ++ V EE GR+DLR LP+ TID Sbjct: 196 GSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRALPIFTIDS 255 Query: 274 EDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPML 333 + +D DDAV + GGG+ L V IADVS+YV+P + L+ EA NR TSVY+ QV+PML Sbjct: 256 AETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYYADQVVPML 315 Query: 334 PEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD 393 P+ LSNG+CSLN + RL C M + G LT YKF ++++ S + Y+++ +L G Sbjct: 316 PKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTDYKFVKSIICSRVKGVYSEINALLAGT 375 Query: 394 QDLREQ--YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 D Q YA ++ L + LY + R+ERG I FES E K I + +++ Sbjct: 376 ADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGHCIDVKKRT 435 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 ++ +IEE M+LAN AA F + P ++R+H++P+ E + S+L G+ Sbjct: 436 SGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQACGINDHFA 495 Query: 512 NK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 + P P++ + +LE V P +++ T +LR M +A Y+ + +GH+GL L+ YAHFTSPI Sbjct: 496 KEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKDYAHFTSPI 555 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRYPDL +HR + LL+ G ET Y+ + + + S E A + R Sbjct: 556 RRYPDLAIHRMMTDLLS------GTDKETMIVRYT-DFAEKASKQSSEREVLAVQIERKA 608 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 D+ K ++ +G ++G+IS VT G FV L++ ++G V SSL + G R Sbjct: 609 EDYYKAEYARRHLGECYEGIISGVTQRGIFVELEN-GVEGFVPASSLTATGTTLTE-GIR 666 Query: 691 LMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 L +SG+T+ LGD + + + +++ K+DF + Sbjct: 667 LSDPASGKTWSLGDSMMITIVRADINLGKVDFEV 700 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 210/661 (31%), Positives = 348/661 (52%), Gaps = 15/661 (2%) Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV 124 DG+L+ R Y LPE +KG RD + F+ E + +++ + GD V Sbjct: 51 DGELIKNNRGKYNLPETQGYIKGVFSIIRDRFAFVDTED--EGIFIPKSGFNGALDGDTV 108 Query: 125 LAQPLGADRKG--RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + L A KG ++E +VRV+ ++G + GFV P S DI IP + Sbjct: 109 FVR-LTAGMKGDRKKEGEVVRVISRDKDIVIGIFQKNKNFGFVTPTHS-FGRDIYIPSIR 166 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + A +VVV +T K G+IVE+LG+ T ++ + + +P Sbjct: 167 MKNAENNQLVVVRITFWGDNERKPEGEIVEILGNPYDTKNMIEALIIREGMSETFPPEAM 226 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + + E+ ++ GR DLR LP++TIDG+DA+D DDAVY EK + G ++L V+IADV Sbjct: 227 AEARRIPMEIGKKELEGRKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSIADV 286 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+Y+ + LDREA RG SVY +V+PM P+ +SNG+CSLNP D+L CEM + K Sbjct: 287 SHYIPEGSVLDREAYKRGNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEIDKK 346 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G++ Y++V+ + R+TY V ++ GD++ + YAP+ + ++ L K++ + + Sbjct: 347 GKVVDSDTYKSVIKTAYRMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIREVKY 406 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 +RG I F+ E K + + + ++E I+ R ++ ++IE+ MI AN + A + + P++ Sbjct: 407 KRGSIDFDIPEIKLVLDEKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLEIPSV 466 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R H+KP E I + LA+ + + P+ + +++E +R ++ M+L + Sbjct: 467 YRTHEKPDMERIKNLNETLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKMILMA 526 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 +KQA Y EN GHFGLA Y HFTSPIRRY DLT+HR + +L G+ T Sbjct: 527 LKQAKYTVENYGHFGLASGYYTHFTSPIRRYADLTVHRILNSVL---HGYPNKKTIIK-- 581 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 +MEE+ H S ER A + + ++M+D+VG + I + F Sbjct: 582 --NMEELPVTCAHISKTERAAMKVEDESVKIKLVEYMMDKVGEEYDATIVGFSNKRVFFE 639 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 +D ++ V S + YY FD + +G+ Y +GD+ +V + ++ E +I+ Sbjct: 640 TED-HVECFWDVVSAKH-YYEFDDREYVMRDTDTGKFYSIGDKYKVTLVRASLSELEIEV 697 Query: 723 S 723 + Sbjct: 698 T 698 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 258/789 (32%), Positives = 382/789 (48%), Gaps = 79/789 (10%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY- 76 +P+RE I++ +T E PA + E+A ++G E++ L+ L+ M +G + R + + Sbjct: 9 LPTREQIIDFITTSEAPAGKREIARAFGLQGNEKI-ALKALLKDMADEGLIDSARGRAFH 67 Query: 77 ---ALPERLDL-------------VKGTVIGHRDGYGFLRVE---GRKDDLYLSSEQM-- 115 +P+ L V T G LRV RK +++ Sbjct: 68 RMGGIPKVTVLRITDVTDEGVPLAVPETWHGENGPPPQLRVREIRARKGSALGVGDRILA 127 Query: 116 KTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFD 175 +T G +A P+ + R EA ++ +L ++ ++ P D R D Sbjct: 128 RTEEAGSGWIAHPM--KKLARGEALMLGILHRDGDRL-----------WLRPVDKREKRD 174 Query: 176 ILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 L+ A G +V+ E RP R T ++ E LGD +A+ H IP Sbjct: 175 TLV--SDAGDADAGDLVLAERAGRPPRIT---ARVTERLGDPFAPRSFSLVAIHKHGIPD 229 Query: 236 IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKKRGG 291 ++P+ V ++ AGL + + GR DLRDLP+V ID DARD DDA++ + G Sbjct: 230 VFPETVIEE-AGLVTRL--DLGEGREDLRDLPIVAIDPADARDHDDAIWAMPDDDPGNPG 286 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 G+R VAIADVS+YVRP + LDREA+ RG SVYFP +V+PMLPE LS +CSL DR Sbjct: 287 GFRAIVAIADVSFYVRPGSALDREAKKRGNSVYFPDRVVPMLPEALSADICSLKHGEDRA 346 Query: 352 CMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-------DQDLREQYAPLV 404 MVC +TV + G L ++F AV+ A + Y + G D+ L + Sbjct: 347 AMVCHLTVKANGTLANWRFARAVVRIAANIAYEDAQAAIDGAPVAGTWDKALADSA---- 402 Query: 405 KHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMI 464 L+ L +K L AR+ R + + E + + + + RI + +R DAH+L+E+ MI Sbjct: 403 --LKPLWACWKALASARDAREPLDLDLPERRVVLDEKGRILSVAPRERLDAHRLVEDYMI 460 Query: 465 LANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLE 524 AN++AA+ +E K P ++R H+ PS E + + + LA +E G P + +L+ Sbjct: 461 AANVAAAKALEAKKAPVMYRDHEPPSREKLVALKDYLATFDMEFALGQVVRPATFNHILK 520 Query: 525 SVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKY 584 + D + +LRS QA Y P N GHFGLAL SYAHFTSPIRRY DL +HR++ Sbjct: 521 RITDDAIRPQIMEQVLRSQTQAYYAPRNAGHFGLALGSYAHFTSPIRRYADLLVHRSLVG 580 Query: 585 LLAKEQ--------GHQGNTT-ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 E G G+ T E M +G+ S AERRA EA RD D Sbjct: 581 AYGLETGKPRLEGPGRSGDIVPRTALTQEEAERMTPIGELISQAERRAMEAERDTIDRYV 640 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 F+ +VG + I+ V FGFF ++ L DGLV VS+L + + +D+ Q L GE Sbjct: 641 AAFLSTKVGELLDTRITGVQPFGFFATVEGLGGDGLVPVSTLGAERFHYDEGAQALEGEE 700 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE-----RAPRNVGKTAR----EKAKKGD 746 SG Y G ++ +R+ N + F L R PR R + + + Sbjct: 701 SGDRYTPGMKLRLRLVEANPINGSLRFELEEGASHLPMRGPRGTRGPKRPMMGRRGRPAN 760 Query: 747 AGKKGGKRR 755 KGG+RR Sbjct: 761 IRHKGGRRR 769 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 331 bits (848), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 220/700 (31%), Positives = 348/700 (49%), Gaps = 34/700 (4%) Query: 75 CYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK 134 Y L + + +GT I +G E +++S ++GDQV Q + + Sbjct: 72 AYTLNTKGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQVRVQFMARRQN 131 Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 +EA ++ +L K VGR E + F+V ++ DILIP ++ G + +V Sbjct: 132 HIKEAMVIAILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILIPKKKLKGGKTDDRALV 191 Query: 195 ELTQRPTRRTKA-VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 ++T+ P K VG++V+VLG+ + ++ L + +PY +P+ VE + E+ Sbjct: 192 KITKWPDADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVEDAAKKISAEIT 251 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + A R D RD+ TID DA+DFDDA+ K G W + V IADVS+YV+ +D Sbjct: 252 AQDYAEREDFRDVWTCTIDPRDAKDFDDALSIRKLESGQWEVGVHIADVSHYVKEGDIID 311 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 REA+ R TSVY + IPMLPE L N +CSL P ++L C + + + Y+ Sbjct: 312 REAQQRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDDEANVKSYRIVHT 371 Query: 374 VMSSHARLTYTKVWHILQ--GDQDLREQYAP----------LVKHLEELHNLYKVLDKAR 421 V+ S+ R Y + IL+ G D + AP + + L L K++ R Sbjct: 372 VIKSNRRYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITLDRLAKLIRGRR 431 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR---FVEKAK 478 + G + F+SEE F + + + R + DA+KLIEE M+LAN + A V+K K Sbjct: 432 MKAGSVKFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTVAESVGIVKKGK 491 Query: 479 EPAL--FRIHDKPSTEAITSFRSVLAELGLELPGGNK--PEPRDYAELLESVADRPDAEM 534 + +R+HD P + + R A+ G +L + R +L++ V + + ++ Sbjct: 492 KAKTLPYRVHDNPDPQKFENLREFTAKFGYKLKSASTKGATARALNKLMDEVQGKREEKV 551 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 +QT+ LRSM +A Y N GHFGLA Y HFTSPIRRYPD +HR I Sbjct: 552 IQTIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLI------------ 599 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 + GG + E +L +HCS E A A RD + +FM + +G + IS + Sbjct: 600 TRYQNGGRSANKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMSEHIGECYDAHISGI 659 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 FG + +D+ +G++ + LD+DYY FD+ L+G Y+LGD + ++V + Sbjct: 660 QSFGIYAEIDENHCEGMIPMRDLDDDYYDFDEKNYCLVGRRRHHVYQLGDPIRIQVAKAD 719 Query: 715 MDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR 754 ++ R++DF+L + P +TA E A +K KR Sbjct: 720 LERRQLDFAL--DDGRPLKAKQTAAEYAVNRKNDRKNSKR 757 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 331 bits (848), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 256/789 (32%), Positives = 387/789 (49%), Gaps = 68/789 (8%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 RE +++ L+ ++ +E+A L +E + L+R L + +G +V Q + + Sbjct: 19 REAVVDLLSSFKRALHANEIAERLGVE-PSRYAKLQRLLEELSLEGSIVALPGQRFRTSQ 77 Query: 81 RLDLVKG-----TVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 + +G T+ H G+GF+ + G DD+Y+S E M +HGD V+ + R+G Sbjct: 78 KQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVRISTRSRRG 137 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDI----------LIPPDQIMG 185 E IVRV+ + +++ G ++ PDD R+ I L+PPD Sbjct: 138 V-EGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLVPPD---- 192 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVE-VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A G VV + + P + ++E VLG + V L I + Sbjct: 193 AEDGAAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEAIAE 252 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 EVP EA GR DL LP+ TID EDARD DDAV+ ++ G +R W+AIADVS+ Sbjct: 253 AEAFGGEVPAEALEGRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIAIADVSH 312 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVRP + LD+ A RG SVY P + IPMLP LS+ LCSL P V RLC+ E+ + + Sbjct: 313 YVRPGSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVELDATAA 372 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL------- 417 + + E + S A+LTY V L + P E L N +V+ Sbjct: 373 VRRARVIEGYIRSIAKLTYPGVARALGFTPE-----PPRSPEAEALRNDLQVMWDLARLL 427 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRND-----AHKLIEECMILANISAAR 472 R RG + + EAK + + + Q + +D A++LIEE M+LAN + A+ Sbjct: 428 RGRRMRRGALDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLLANETCAQ 487 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA 532 FV P +FR H P + F ++ ELGL + +P+ + L+ + P Sbjct: 488 FVVDQGIPTVFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHPQK 547 Query: 533 EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 ++L +LLR+MKQA+YD N GHFGLA +Y HFTSPIRRYPD+T HRAI+ +L +G Sbjct: 548 QVLHMLLLRAMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVL---RGE 604 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIS 652 + + +E + E + + S ER+A E R+V D + M ++G+ F+G ++ Sbjct: 605 RVDRSEA-----ATERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGDTFEGTVT 659 Query: 653 SVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA 712 + G G +V ++D F+D LV + SL D Y D G R++G SG +GD + V++E Sbjct: 660 GIVGGGVYVNIEDPFVDVLVRMESLGPDQYEIDDEGLRVIGRRSGDRIAIGDAMLVQIED 719 Query: 713 VNMDERKIDFSLISSE------------------RAPRNVGKTAREKAKKGDAGKK---G 751 V + R + ++ E R PR V + K KG K G Sbjct: 720 VAILRRAVYGRRLAGEPTADEPKPRRLRRDAADARPPRRVKISKSTKPLKGMKTSKRTQG 779 Query: 752 GKRRQVGKK 760 GK +V KK Sbjct: 780 GKSAKVRKK 788 >UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q6SG71_9BACT Length = 495 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 184/491 (37%), Positives = 283/491 (57%), Gaps = 26/491 (5%) Query: 233 IPYIWPQAVEQQVAGLK--EEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 IP+ W + ++ ++A +K + +P R DL +P +TIDG DA+DFDDAV+C K + Sbjct: 17 IPFEWNEKIDNELADIKLNKNLP------RKDLTKVPFITIDGADAKDFDDAVHCVKNKS 70 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 + L VAIADV+ V+P T LD EA RGTS+YFPS+VIPMLPE +SN LCSL P R Sbjct: 71 S-FTLSVAIADVAELVKPGTALDNEAIERGTSIYFPSKVIPMLPEKISNNLCSLVPNEIR 129 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 ++CE+ S+ G L Y F EA + SH R+TY +V L+ + L + ++ L EL Sbjct: 130 NVLICEIVFSNSGDLQSYNFLEARIKSHKRMTYIEVDKYLKSNSTLSKSVEDSIRSLSEL 189 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 + +L K R +R + E +E N E +++ I +R +H++IEE M+ AN+ A Sbjct: 190 TH---ILLKKRSQRQALEIEGQEPLLRINNEGKVDEITLPKRLFSHQMIEEAMLAANVCA 246 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA-DR 529 A F+ K + ++RIH++P + S ++ + G K P D S A ++ Sbjct: 247 ANFMNKHYKFGVYRIHEEPEELKLESLKNFFSIKGFS--DSYKKIPLDLINQCLSYAREK 304 Query: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589 + LQT++L+S+K+A Y + GHFGL L+ Y+HFTSPIRRYPDL HR IK +L K Sbjct: 305 KLNKALQTVVLQSLKRAEYSTKEVGHFGLQLERYSHFTSPIRRYPDLMTHRLIKNILNK- 363 Query: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649 G + EE+ + S ER A+ A+R V + C ++ VG+ F Sbjct: 364 ----------GDLAINKEEIEEECVEMSDLERMAERASRQVTQQMICYYLKQYVGSDFNA 413 Query: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR 709 V++ + FG F +D+ ++ GL+HV+ L +D Y +D+ L G+ +G+++RLG + V Sbjct: 414 VVTGIAEFGLFAEIDNFYVSGLIHVTDLPSDRYFYDKEANILKGKKTGRSFRLGQNILVT 473 Query: 710 VEAVNMDERKI 720 + ++ +ERKI Sbjct: 474 IANISPEERKI 484 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 219/675 (32%), Positives = 362/675 (53%), Gaps = 23/675 (3%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQ 114 R + M +G++ +T+ + + L + + + ++ + + F + + +++ + Sbjct: 40 FRGAVNRMVAEGKIAYTKNRFFHL-KSIGVYAAEIVRNSRTFCFAQRASDEARIFIPGKY 98 Query: 115 MKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 + I GD VL +P A E ++ + S G E FV PD+ LS Sbjct: 99 SRGAILGDLVLVRP-QAQLGDSEEGQVFSIYKNGPSAFSGVLMQEDEDYFVQPDN--LSK 155 Query: 175 D-ILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 D I + I A+ G V+ ++ R +R ++ + ++ G L H I Sbjct: 156 DRIPVRSKSIGDAKPGDKVLAKVVLRGSRHSEHICELTGAYGSAETAAACARAVLDAHGI 215 Query: 234 PYIWPQAVEQQVAGLKEE-VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 +PQ V +Q + E+ + + + R+DL DLP+ TID D++D DDA+ EK Sbjct: 216 TEEFPQEVLEQARSISEQGIRDSERVHRLDLTDLPIFTIDSADSKDLDDAISIEKAEDC- 274 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 + + V IADVS+YV TPLD+EA RGTS+Y+ ++VIPMLP+ LSNG+CSLNPQ DRL Sbjct: 275 YHVGVHIADVSHYVGYRTPLDQEAFRRGTSIYYANRVIPMLPKELSNGICSLNPQEDRLA 334 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG--DQDLREQYAPLVKHLEEL 410 M VS G L + F + V+ S + Y +V +L+G D+DL+++Y+ ++ L+ + Sbjct: 335 FSALMNVSLDGELMDFTFRKTVIRSRVKGVYKEVNALLEGGADEDLKQKYSEVLPSLQLM 394 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 H LY+ L + + +RG E+ E+K I + I+ + + +IEE M+LAN +A Sbjct: 395 HELYQRLFQNKVKRGAPQLETSESKIIVDENDVAVDIQPRVQGLSEGMIEEFMLLANEAA 454 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL-ELPGGNKPEPRDYAELLESVADR 529 A ++ K P ++RIH+ PS E ++S + +L LGL L K +P A +L S D Sbjct: 455 ATLAKREKLPFVYRIHEHPSPEKLSSLKEILERLGLPSLRVDKKVKPGVLAGILTSSRDS 514 Query: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI-KYLLAK 588 ++ T +LRSM +A YD GH+GLAL++YAHFTSPIRRYPDLT+HR + +Y++ Sbjct: 515 GLFPIINTQVLRSMAKAQYDERPVGHYGLALENYAHFTSPIRRYPDLTIHRILTEYVVLH 574 Query: 589 EQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF 647 E + H ++ + Q + + E A + R+ D K +++ +G F Sbjct: 575 ETPDK--------IHKRYDKFVAQASKQSTETEITAMQIERECNDRYKAEYIRQHIGEEF 626 Query: 648 KGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVE 707 G+I+SV G G ++ L++ ++G V V L N Y D + L +G+ YR+GD+V Sbjct: 627 DGIITSVLGRGLYIELENT-VEGYVKVEDL-NGIYEHDGFTE-LKNHQTGKRYRVGDKVR 683 Query: 708 VRVEAVNMDERKIDF 722 ++ AV+++ +IDF Sbjct: 684 IQCVAVDVNAGRIDF 698 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 211/653 (32%), Positives = 340/653 (52%), Gaps = 31/653 (4%) Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIV 142 +V GT +G EG ++++ + GD+V Q L A R+GR EA ++ Sbjct: 100 IVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQ-LFAKRRGRAPEAAVI 158 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 ++ K + VG+ F+V +D L+ DI IP D + A+ G V+V + + P + Sbjct: 159 EIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDNLGNAKNGDKVIVRILEWPEQ 218 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 +G++ VLG ++ L +PY++PQ VE+ L ++ EE A R D Sbjct: 219 SKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKITEEELARRED 278 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 R + TID +DA+DFDDA+ + + V IADVS+YV +D+EA NR TS Sbjct: 279 FRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNRATS 338 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 +Y + IPMLPE L N LCSL P ++ C ++ + ++ Y+ +V+ S R Sbjct: 339 IYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICHSVIKSDRRFA 398 Query: 383 YTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 Y + +++ G+ D +E + +L+ L + L + R + G I+FE +E +F + + Sbjct: 399 YEEAQAVIETGEGDCKEA-------ILKLNELAQRLREERFQNGAIAFERKEVRFEIDEK 451 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFV-----EKAKEPALFRIHDKPSTEAITS 496 R + + +A+KLIEE M+LAN + AR + K + ++RIHD P + + + Sbjct: 452 GRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKLET 511 Query: 497 FRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 + G +L G N + LL+++ ++P+ ++ T+ +RSM +AIY +N G Sbjct: 512 LSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDNIG 571 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H+GLA Y HFTSPIRRYPDL +HR + KYL +GG + + Sbjct: 572 HYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYL-------------SGGSSVDKNDYEEKC 618 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +H S E+ A A R + + +FM + +G VF GVIS VT +G +V L + +GL+ Sbjct: 619 KHSSAMEQLAASAERASIKYKQVEFMSEHLGKVFDGVISGVTEWGLYVELKENMCEGLIP 678 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + LD+DYY +D L+G Y LGD + VRV N+D +++DF +S Sbjct: 679 IRCLDDDYYEYDDKNFCLIGRRYRHRYSLGDAITVRVAQANLDRKQLDFEPVS 731 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 325 bits (832), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 189/643 (29%), Positives = 336/643 (52%), Gaps = 31/643 (4%) Query: 95 GYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK-GRR-EARIVRVLVPKTSQI 152 GY F+ ++G D+++ ++ I GD L Q +RK G++ E ++++L K Sbjct: 29 GYAFVNIKGFPKDIFIPKKKTNRAIEGD--LVQVRFKNRKSGKKIEGEVIKILKRKRKNF 86 Query: 153 VGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVE 212 +G ++ G V+ ++ + DILIP ++ G + V+VE+ + P +GKI++ Sbjct: 87 IGILKMKSQYGLVIVHNNTIHVDILIPINEFKGYQHNEKVLVEIVKWPKNSKNPLGKIIK 146 Query: 213 VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 G + + L + I Y +P+ VE++ + + + R D+R++ TID Sbjct: 147 GFGVSGEYKTEIFSLLSEYGISYEFPKEVEKEAKEIVLKKNSDLNMRR-DMRNINTFTID 205 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 DA+D DDA+ K W + + IADVS+YV+ + LD+EA R S+YF +VIPM Sbjct: 206 PLDAKDIDDALSIRKLNSNTWEIGIHIADVSHYVKEGSFLDKEAYTRANSIYFVGKVIPM 265 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG 392 LP++LSN LCSL+P+ D+L ++++G++ F + ++ S+ R TY +V I++ Sbjct: 266 LPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKILKSWFGKTIIRSNRRFTYEEVQKIIER 325 Query: 393 DQ-DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 + D E + L+ K+L K R + G IS E E KF + + R+ + Sbjct: 326 KKGDYHEDISTLL-------FFSKILTKNRLKNGAISIEKVEIKFHLDKKNNPTRLYLEK 378 Query: 452 RNDAHKLIEECMILANISAARFV------EKAKEPALFRIHDKPSTEAITSFRSVLAELG 505 N+AH+LIEE M+LAN + F + + ++R+HD+P + I + ++ LG Sbjct: 379 SNEAHRLIEEFMLLANRKISEFFSLNLDGKPSNRTYIYRVHDEPDFQKIFVLKKIIEPLG 438 Query: 506 LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAH 565 L N ++ LL+S+ + + M++ ++LR+M +A Y +N GH+GL+ Y H Sbjct: 439 YFLDLKNIKTSINH--LLKSIQGKSEQNMIENLILRTMSKAKYSTKNIGHYGLSFIYYTH 496 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRY D+ HR + Y L K+ S+E + +HCS ER A + Sbjct: 497 FTSPIRRYSDIIAHRLLNYYLTKKNNKLK----------SIEFYEEQSKHCSEKERLAID 546 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD 685 A R+ +L+ ++ +G F+G+I+ T + ++ L +G++ + + D+Y Sbjct: 547 AEREFLKYLQVKYIKKYLGKEFEGIITGFTEWSVYIDLLVFQTEGMIRLRDIQEDFYTLH 606 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 ++G + Y LGDR++V++ N+++++I I E Sbjct: 607 SNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQITLGWIKKE 649 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 194/520 (37%), Positives = 300/520 (57%), Gaps = 15/520 (2%) Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 +I++VLG G+ + L ++++ ++ + ++ + +V ++ R D+R L Sbjct: 175 RIIQVLGHPDDAGVDISAMLTSNQVRQVFNGKIVKECKRIPAKVQKDELENRKDIRGLLT 234 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 VTIDG+DA+DFDDA+ K G + L+V IADVS+YV+ ++ LD+EA RG S+Y + Sbjct: 235 VTIDGDDAKDFDDAISIVKNEKG-YVLYVHIADVSHYVKENSALDQEAYLRGNSIYVCDR 293 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 V+PMLP LSNG+CSLNP VDRL + C M V KG L Y + +V+ S R TY KV Sbjct: 294 VVPMLPFDLSNGICSLNPNVDRLTITCAMQVDEKGNLLTYNIFPSVIHSDKRCTYKKVNA 353 Query: 389 ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIE 448 L GD+ + ++Y+ + + L L +L K+L K RG I F ++EAK I + + Sbjct: 354 CLDGDKAILQEYSEVKELLFTLESLAKLLKKQSHNRGCIDFNTKEAKIIMDKNGYPVDVN 413 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 +R A ++IEECMILAN+ A + K P+++R+H+ P + + + +V L + Sbjct: 414 VLERGFAEQMIEECMILANVCVAHHMHVNKIPSMYRVHENPDPKKVATICTVAN--SLRI 471 Query: 509 PGGNKPEPRDYAEL---LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAH 565 P P+ + +++ LES+ D E+L + LRSM++A YD GHFGLAL+ Y H Sbjct: 472 PFDFYPDEVNASQIQKFLESIQDENAYEVLSMVSLRSMQKARYDAHCLGHFGLALEEYCH 531 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRY DL +HR + KEQ + E +++ + H S ER A Sbjct: 532 FTSPIRRYSDLVVHRMLHAYCFKEQKRTPSNDE--------KKIEKQAFHISEKERDAIM 583 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD 685 R V D+ K +M +VG VF+G I V FGFFV +D+ ++GLV V +L ND+Y +D Sbjct: 584 MERMVNDYKKAQYMEKRVGQVFEGTIVGVMSFGFFVEMDNT-VEGLVPVHTLSNDFYDYD 642 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + L G++ G+ +++G RV V V ++ ++ FSL+ Sbjct: 643 EDTMTLKGQTHGKVFQMGMRVRVVCTDVQREKGQVTFSLL 682 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 224/695 (32%), Positives = 347/695 (49%), Gaps = 44/695 (6%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDD----------LYLSSEQMKTCIHGDQVLAQPLGADRK 134 + GT+ G G+L + DD LY+S + GD+V A + R Sbjct: 69 IAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYISERDLGDAQTGDEVYATAINRQRS 128 Query: 135 GRRE-ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 G + R+V ++ ++ VG YF G G+V D + I + G R VV Sbjct: 129 GGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIFNSPIHVGDPGAKGVRSEDKVV 188 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +++ P++ G I +VLG + G+ + + IP +P+ V +A +E+ Sbjct: 189 IDILHFPSKNYLGQGVIAKVLGPHGKAGVDLLSIIYEFGIPLDFPEEV---LAEAREQAS 245 Query: 254 --EEAKAG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 +E K G R DL +VTID DARDFDDA+ + G W L V IADV+++V+ + Sbjct: 246 LFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTRDEKGHWLLGVHIADVAHFVKEGS 305 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LDREA++RGTSVY P +VIPMLPE++SNGL SL R + + +G +F Sbjct: 306 LLDREAKHRGTSVYLPGRVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTPEGIPVHTEF 365 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER---GGI 427 + R Y +V I+Q D + + V+ L L N+Y++ R R G + Sbjct: 366 ANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVREL--LKNMYQLAMMLRGRRFSAGAL 423 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 E K F+ + R+ + + +++H++IEE M+ ANIS A L R+H Sbjct: 424 ELHLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLAANISIAEAFHDRGLRFLRRVHP 483 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAELLESVADRPDAEMLQTMLLRSMKQA 546 P +F LG L NK + R D +L+ V P + + LLRS+KQA Sbjct: 484 SPEMPRQLAFAEFANALGFTL---NKVQSRKDLQKLINEVHGTPVEQAINYALLRSLKQA 540 Query: 547 IYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 Y + GH+ LA+ Y HFTSPIRRYPDLT+HR I +L + +G S Sbjct: 541 EYTDKELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEILERPDKGKGQ---------SP 591 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDL 666 + + QLG S+ ERRA+ A R++ +M+D + +I+ V FG F R D+ Sbjct: 592 QGLRQLGHELSLRERRAESAERELTKVKLLTWMIDNNIRTLETMITGVETFGMFCRGTDV 651 Query: 667 FIDGLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++GL+H+S L +DY+ + ++GE +GQ YR+GD + V VE +++D R++DF L Sbjct: 652 PVEGLLHISRLGKHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEVEKIDLDRRELDFRLP 711 Query: 726 SSERAPRNVGKTAREKA----KKGDAGKKGGKRRQ 756 P+ GKT ++ + K+ AG K+++ Sbjct: 712 R----PKQYGKTKKKGSGAPEKRAPAGAAKSKKKE 742 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 194/627 (30%), Positives = 328/627 (52%), Gaps = 29/627 (4%) Query: 108 LYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVPKTSQIVGRYFTEAGVGFVV 166 ++++ ++ D+V L A RK R E ++ +L VG E F++ Sbjct: 107 IFIAERNSAHAMNNDKV-KIALFAKRKNRNPEGEVIEILERANDTFVGTLKVEKFYAFLL 165 Query: 167 PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 ++ L+ DI IP D++ G + G VV++ + P +G+++++LG + Sbjct: 166 TENRTLANDIFIPKDKLKGGKNGDKAVVKIVEWPEEAKNPIGQVIDILGKAGENTTEMHA 225 Query: 227 ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE 286 L +PY++P+ VE + E+ E A R D R++ TID +DA+DFDDA+ Sbjct: 226 ILAEFGLPYVYPKNVETAAEKIPAEISEADYAEREDFRNVTTFTIDPKDAKDFDDALSIR 285 Query: 287 KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP 346 + G W + V IADV++YV+ +D+EA R TSVY + IPMLPE L N +CSL P Sbjct: 286 LIKPGLWEVGVHIADVTHYVKEGGVIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRP 345 Query: 347 QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVK 405 ++L ++ KG + + ++ S R TY + +++ G+ D +E+ Sbjct: 346 DEEKLAFSVIFNMNEKGEVKDSRIVHTIIKSDRRFTYEEAQKVIETGEGDYKEE------ 399 Query: 406 HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIL 465 + EL+ L ++L K R G I F+ E KF + + + + +A+KLIEE M+L Sbjct: 400 -ILELNKLAQILRKQRLAAGAIDFDRVEVKFEIDETGKPLSVYFKESKEANKLIEEFMLL 458 Query: 466 ANISAAR---FVEKAKEPALF--RIHDKPSTEAITSFRSVLAELGLEL-PGGNKPE-PRD 518 AN + A V K K+ +F RIHD P + + + + G ++ G+K E + Sbjct: 459 ANRTVAEKIGKVPKNKKAKVFPYRIHDLPDPDKLENLNWFINRFGYKIRTSGSKTEISKS 518 Query: 519 YAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 LL+ + ++ + +++T+ LR+M++A Y N GH+GLA Y HFTSPIRR+PD+ + Sbjct: 519 INRLLDDIKNKKEQNLVETVSLRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMV 578 Query: 579 HRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 HR + LA G T + Y +L H S E+ A A R + + +F Sbjct: 579 HRLLTRYLA-----GGRTVQEAKYE-------ELCDHSSEMEQIAANAERASVKYKQVEF 626 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 M +++G F GVIS VT +G +V L++ +G++ + L +DYY FD+ L G + Sbjct: 627 MGERLGMEFDGVISGVTEWGLYVELNENKCEGMIPMRDLGDDYYDFDEKNYCLTGRRHHK 686 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLI 725 + LGD V ++V N++++++DF+L+ Sbjct: 687 KFSLGDPVTIKVARANLEKKQLDFALV 713 >UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organisms RepID=Q6KI25_MYCMO Length = 708 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 217/679 (31%), Positives = 356/679 (52%), Gaps = 42/679 (6%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKT 117 L + + G++ R Y +P+ L GT+ + G+GF+ E +KD +++S + Sbjct: 39 LFDLVKSGEIFKDRDNNYYMPKFLGEFNGTISINSKGFGFVDFEDDKKDSVFVSKFNLNG 98 Query: 118 CIHGDQVLAQPLGADRKGRRE---ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 +GD V + + ++ I +++ T +VG F E G D + + Sbjct: 99 SFNGDLVSVKSYCESNEAEKQKCFGVISKIIKRNTQYLVGWSFLENGKMKFKAFDEKYNV 158 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG--DNMGTGMAV-----DIA 227 + D + + ++ V + + + ++ +IV+ +G +N +A+ DI Sbjct: 159 TQFLFLDNVTNLKENTLIKVRIVE--FNKMSSIVQIVKTIGHLNNPYDEVALVIEESDIV 216 Query: 228 LRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK 287 +E I + Q ++ KEE+ R D R+ +VTIDG+D +DFDDA+ EK Sbjct: 217 TEFNENTLIESANIPQSISREKEEI-----NNRRDYREKLIVTIDGDDTKDFDDAILVEK 271 Query: 288 KRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 K G + L V IADVSYYV+ ++P+D EA +RGTS+Y +VIPMLPE LSNG+CSLNP Sbjct: 272 K-GDNFILSVHIADVSYYVKENSPIDLEALSRGTSIYLADRVIPMLPESLSNGICSLNPN 330 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHL 407 VDR M EM + KGR + + ++++S RLTY +V + + V +L Sbjct: 331 VDRFTMGIEMEIDEKGRTIRSEIFPSIINSKKRLTYKEVNRFYNNEISFDD-----VPNL 385 Query: 408 EELHN----LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 E+ N L +L K + G + FE EE K I + + R+ERI+ +R + LIE M Sbjct: 386 NEMLNTSLELSNILQKFKIADGYVDFEIEEPKVILDKDGRVERIDVRERGLSEVLIENFM 445 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 + AN A F+ K K P L+RIH+KP I+ ++ L + + + +++ L Sbjct: 446 VRANEEVATFLAKNKIPTLYRIHEKPDNLKISKLNGIIKTLNINAFFQSGNDSLKFSKTL 505 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 + D+ ++ ++LRSM++A Y P N GHFGL + Y HFTSPIRRYPDL HR I+ Sbjct: 506 NKLKDQRFDNFIKILILRSMQKAKYSPNNVGHFGLGSKFYLHFTSPIRRYPDLLTHRIIR 565 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQ-LGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 ++ K Q + + S +L+ +G+ S +E +A E R+V D K +F + Sbjct: 566 EIIFKNQKDKIS---------SFNAILKRIGEMNSESENKAVELERNVIDIKKAEFYESK 616 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +G F G++ S+ FGFFV ++ +D L+H ++ D Y+ ++ G +++ + +T + Sbjct: 617 IGKNFVGIVVSILPFGFFVEFENK-VDVLIHKDNIV-DAYKINEEGTKIILKD--KTILI 672 Query: 703 GDRVEVRVEAVNMDERKID 721 GD+V V + N RKID Sbjct: 673 GDQVNVTIIGTNRLARKID 691 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 315 bits (807), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 204/687 (29%), Positives = 352/687 (51%), Gaps = 32/687 (4%) Query: 55 LRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR--KDDLYLSS 112 ++ L +E++ ++ + L +++ KGT+ + G+GF+ + +D +++ Sbjct: 33 IKNYLDQLEKNNKITISLENNIYLLDQI-YKKGTIKLNPKGFGFINDINKINDEDHFIAG 91 Query: 113 EQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVG---RYFTEAGVGFVVPDD 169 + IH D+V+ L + R +A ++ ++ ++G R F + + F+ D Sbjct: 92 VDLNNSIHQDEVVY-ILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDK 150 Query: 170 SRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGT-----GMAV 224 S SF +I ++ ++ R K +++ ++G++ +A Sbjct: 151 SFDSFRFVIVNKNEFKYEEFNIIKAKIISCKER--KIFIRLIRIIGNSKKASDRILAIAE 208 Query: 225 DIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVY 284 + ++T A + ++ K E E K L + +VTIDG D++D DDA+ Sbjct: 209 EFDIKTSFDKQTLDNAKQINLSTDKLE-KEFLKRQNNSLVNKTIVTIDGIDSKDLDDAIC 267 Query: 285 CEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344 EK ++L+VAIADVSY+VR T LD+EA RG S Y ++VIPMLP +LS+ LCSL Sbjct: 268 VEKLENNNYKLFVAIADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSL 327 Query: 345 NPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLV 404 NP +L VCEM + + K YE+V+ S ARL Y +V + + + Sbjct: 328 NPNTKKLVFVCEMEFDNNANMLNKKVYESVIISKARLNYDEVNNYFKTKTWTHDDKTK-- 385 Query: 405 KHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMI 464 K L+ + LYK L+ + ++G ISF+ E K I + + I+ + A KLIE+ M+ Sbjct: 386 KMLDIAYELYKKLENLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMV 445 Query: 465 LANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP--EP----RD 518 N + A + + P L+R H+KP + + ++ L G+ NK +P Sbjct: 446 SCNEAVAELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHT 505 Query: 519 YAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 +++ E + D + E+L LLR M +A Y EN GHFGLA Y HFTSPIRRY DL + Sbjct: 506 LSQIKEQIKDETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLV 565 Query: 579 HRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 HR +K L + + + Y + ++ + E ++ E R+V C++ Sbjct: 566 HRYLKQYLITKDLEKTSLENNANYVNKVSNII------NDTETKSVECEREVIKACMCEY 619 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 ML++V N + IS+V FG F++LD+L ++GLVH+S++++D +D+ R++ + Sbjct: 620 MLNKVNNTYTATISAVLKFGIFIQLDNL-VEGLVHISNMNSDLV-YDETN-RILIKPDNT 676 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLI 725 YR+G +V+V++ V++ +R IDF LI Sbjct: 677 YYRMGQKVKVKLINVDIKKRTIDFVLI 703 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 231/697 (33%), Positives = 334/697 (47%), Gaps = 76/697 (10%) Query: 95 GYGFLRVEGRKDDLYLSSEQMKTCIHGDQV-LAQPLGAD--RKGRR----EARIVRVLVP 147 GYGF++ + + ++ MK+ GD V +++ G D R+ RR + R+ RV+ Sbjct: 8 GYGFVKTA--EGEFFIPESAMKSAFDGDVVAVSRASGGDGNRRARRTDRPQGRVARVVTR 65 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 + IVGRY G VVP+D R+ DI AR G +V V +T P A Sbjct: 66 AHASIVGRYEIAEPYGVVVPEDPRIRHDIFTLRRDASTAREGDIVRVRITAYPEAGQPAF 125 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ----AVEQQVAGLKEEVPEEAKAGRVDL 263 G I EV+G G+ VD+ + H + + AG+ + +E G DL Sbjct: 126 GSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDE---GYRDL 182 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 R TID DARDFDDA+ ++ G R+ V IADVS YV +TPLD EAR R TSV Sbjct: 183 RHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEARARATSV 241 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y +V+PMLPE LSN +CSL P V R + ++ S L Y AV+ S AR Y Sbjct: 242 YLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELVRVDAYPAVIESKARFVY 301 Query: 384 TKVWHILQ-----GDQDLREQYAP------------------------------------ 402 V L+ G DL + P Sbjct: 302 EDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVAGDDMHGIR 361 Query: 403 -LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 + LE LH + + L R GGI F+ EE K + + R ++ +RNDA L+EE Sbjct: 362 AIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRNDATSLVEE 421 Query: 462 CMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG----LELPGGNKPEPR 517 MI AN + AR + A ++R+H+ P + + +L E G + L P+ Sbjct: 422 AMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGYDDAVSLSAFAMGSPK 481 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 +L RP+ ++ ++LR+MKQA Y PE + HFGLA +Y HFTSPIRRYPDL Sbjct: 482 AVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSPIRRYPDLM 541 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML-QLGQHCSMAERRADEATRDVADWLKC 636 HR +K +L +G G T+ + E L + H S E+ A+ A R+ + Sbjct: 542 AHRLLKAVL---RGRDGTTS-------AQEAALPDIADHASRQEKVAETAARESQELKMY 591 Query: 637 DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESS 696 + + + +G F G++S V+ GF+VR+ ++ +G V + L +++ D + L G S Sbjct: 592 ELLSEHIGEPFDGMVSGVSTSGFYVRI-EMGAEGFVPMRDL-GEFFHLDSARRMLSGVES 649 Query: 697 GQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 G RLGD V +RV AV R F+L S+ RA R+ Sbjct: 650 GDVVRLGDAVRIRVVAVFPYARTATFALASNRRASRH 686 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 311 bits (797), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 244/829 (29%), Positives = 389/829 (46%), Gaps = 66/829 (7%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P + +A EL + G+++ L +R + G ++ + + +P+ +DLV GT+ + Sbjct: 18 PLDKSGIASELGL-GKKERRNLDYEMRLLLSKGDIIRIKGDSFCIPKDVDLVTGTIKFRQ 76 Query: 94 DGYGFLRVEGRKDD-----LYLSSEQMKTCIHGDQVLAQPLGAD------RKGRREA--- 139 G L + + + + +++E +H D+V+ + A ++GR++A Sbjct: 77 KGSAILIPDAKAGEPKPKAIEIAAEDTSVAMHDDKVVVRLADAPPNEPVWKRGRKQASAY 136 Query: 140 -------RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM---- 188 R++R+ +VG +V PDD R+ DI +PP + +R+ Sbjct: 137 QPTGPFGRVIRIQKRARETMVGTLCKTRFFHYVAPDDPRIIHDIYVPPPE--ESRLDPLP 194 Query: 189 --GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 G VVV+L + R G+++ LG + L + + +P V ++ Sbjct: 195 TVGSKVVVKLHEWEQRHVNPEGELIANLGKTHEPQAELMGVLHKYNLDPEFPPEVMKEAE 254 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + +V E+ GR DLR TID +DA+DFDDA+ E R+ + IADV+ YV Sbjct: 255 SVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAISLEYPDDKHVRVGIHIADVAAYV 314 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 R T LD EA NRG S Y VIPMLP LSNG+CSL DRL +T + KG + Sbjct: 315 RGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVEDEDRLTKSVFVTFNKKGDIV 374 Query: 367 GYKFYEAVMSSHARLTYTKVWHI-----LQGDQDLR-------------------EQYAP 402 + V+ S+ RLTY + + + LQ +DL+ + Sbjct: 375 EVDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPPAHQTGSTGRALNTLSDAELGK 434 Query: 403 LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEEC 462 L K + EL ++ L AR + G ++ + EE K + + +R+E+ +++H+LIEE Sbjct: 435 LQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEKGYADRLEKIVNDESHQLIEEY 494 Query: 463 MILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAEL 522 M+LAN A+ +++ + P ++R+H+ P E + R +A G+E N +D +L Sbjct: 495 MLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYMATWGIETSDLN--NRKDLNKL 552 Query: 523 LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 LE+++ P + +L+T +LRS+K+A Y GH+GL Y HFTSPIRRY DL HR Sbjct: 553 LETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKNDYLHFTSPIRRYSDLVTHRVF 612 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM--- 639 + L K +G T Y+ + + H S E + EA R+ +F Sbjct: 613 NHFLVKVRGEPALNEST--LRYNASKASSVADHLSQTEVNSVEAERESIKVKLLEFFERE 670 Query: 640 LD-QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 LD + F +I+ V G F+ L + G+VH+S+L +D YR + G L+G Sbjct: 671 LDKKKKTAFDAIITEVRNHGMFIELKESNAFGMVHISALRDDLYRLNASGTALIGRRKKN 730 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVG 758 Y LG ++V V V+ +R++DF L + P N T + K Q G Sbjct: 731 AYSLGQMIQVEVHKVDRFKRQVDFRLCDKQ-DPNNPKPTIMPTEAAEVSPAKPSPSSQNG 789 Query: 759 KKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAA 807 K R + K KP K ARKA KPS T TK R+A Sbjct: 790 KTPKRGSKRPARKQGKAKPAGGK--ARKA-KPSRATSDKGKPTKPARSA 835 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 224/718 (31%), Positives = 349/718 (48%), Gaps = 75/718 (10%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRV------------EGRKD---DLYLSSEQMKTCIHG 121 A E D++ T I + Y ++ EG KD DL+ + + Sbjct: 36 AHKEYFDIIDNTHIQLKKRYALGKITIKRTIAFLMMPEGAKDIAIDLF----DLNGAMES 91 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFD------ 175 D VLA +G + P +I+ T+ + D ++ FD Sbjct: 92 DIVLADIVGYN--------------PYIKEIIHSNLTKLIADVKIRSDKKMRFDANEAQN 137 Query: 176 --ILIP--PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTH 231 I++ PD ++ G VV++++T+ RT+ K EV+G M + + + Sbjct: 138 KLIIVKDVPDYLVD---GHVVLLDVTE--VTRTQIFTKFREVIGHKNDPDMEIVKIVYEY 192 Query: 232 EIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 E P + + V ++ +K + E K R D+ D +VTIDG DA+D DDA+ E G Sbjct: 193 EWPLKFSKEVLNELHHIKIDHEYERKTRR-DITDKLVVTIDGADAKDLDDAISLEYLENG 251 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 ++L V IADVSY+V+ + L+ A NR TSVY +VIPM+P LSN LCSLNP D+ Sbjct: 252 NFKLGVHIADVSYFVKEGSYLNEAAYNRATSVYLADRVIPMIPHGLSNDLCSLNPNEDKY 311 Query: 352 CMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELH 411 + CEM ++ + Y Y +++ S RLTY V + + Q + + K L ++ Sbjct: 312 TITCEMELNPDIEVVNYDIYASIIQSKHRLTYHDVNQLFKEHQS--TGFKEVDKMLFTMN 369 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 + + L + R +RG I F S E KF+ + + +E+ ++A LIE MILAN + + Sbjct: 370 EIAQKLKQIRTKRGAIDFNSTELKFVLDVNGDVLGVEERTTDEAEALIESFMILANETVS 429 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD 531 R P ++R+H+KP++E + A+LG + K + L + VA P Sbjct: 430 RHFFFNDLPGIYRVHEKPTSEKLDIAFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPY 489 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 ++ +LLRSM++AIY + GHFGLA Y+HFTSPIRRYPDL LHR I+ L+ Sbjct: 490 EYIINMILLRSMQKAIYSEKPIGHFGLASAYYSHFTSPIRRYPDLLLHRMIRDLML--NN 547 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 T + HY + M +H S ER+A R+V +M + F G I Sbjct: 548 PDAETLKKLKKHYR-DLMPSYSEHTSNQERQAVNMEREVNKLKSRQYMAQFINQSFDGQI 606 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 S+ GFFV+L++ I+GLV+V ++ N Y +D E G+ YRLGD++ V++ Sbjct: 607 VSMMPSGFFVKLEN-GIEGLVNVRNV-NQYLIYDDEALLFYTE-RGKRYRLGDKIRVKLI 663 Query: 712 AVNMDERKIDFSLISSERA------------------PRNVGKTAREKAKKGDAGKKG 751 V+ E IDF++ A P ++GK+ + K+K +GKKG Sbjct: 664 KVDEVENNIDFTIDPQNHAEDYKAHKTSTSKVKRKPNPADMGKSRKTKSKAPKSGKKG 721 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 225/716 (31%), Positives = 356/716 (49%), Gaps = 32/716 (4%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 I +E I E L A EL L + ++Q ++ +E++G LV T++ Sbjct: 3 ITIKEKITEALENYRDAAEPLELFRALGLNDKDQFAAA---VQELEQEGVLVATKKGRLL 59 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL---GADRK 134 + L +I G+ F R +D+Y++ E K + GD VL + + G Sbjct: 60 SVKSAGLTPAQMISQSKGFSFARPLEGGEDIYVAQEDRKRAMLGDTVLLRDIRDSGKGLS 119 Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 GR E +I+R K +++ G + D + + + + + G V Sbjct: 120 GRVE-KIIR----KGNRLFTGTVVRRGRDLELELDGAFRYQVPVEKKGSLHGKNGDKVQA 174 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE--V 252 L+ P R K +I++V G + D + + IP + + ++ L E Sbjct: 175 ILSYGP-RSGKLTARILKVYGKAASAKVCADAIIDANGIPKKFKKETLREAEKLSREPIT 233 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 P E K R DLR+ + TIDG DA+D DDA+ EK G GW+L V IADVS+YV+ + + Sbjct: 234 PAERKK-RADLREQLIFTIDGADAKDLDDAISVEKD-GAGWKLGVHIADVSHYVKEGSLV 291 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D EA+ RGTSVYF +VIPMLPE LSNG CSLN ++L C MT+ KG L GY+F + Sbjct: 292 DEEAKQRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMTLDRKGNLRGYRFQK 351 Query: 373 AVMSSHARLTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 +V+ S R Y +V +L+G + L+E+Y P++ L+ L ++L+ RG + FE Sbjct: 352 SVICSKVRGVYDEVNQVLEGCAAERLKEKYQPVLASLQAGQELAQLLEAKGRRRGTMDFE 411 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 S EA+F + I + + K+IE+ MILAN +AA + + + P ++R+H+ P Sbjct: 412 SSEARFFLDRNGTCVDILPRSQGLSEKMIEQFMILANQAAALYAKCLEIPFVYRVHEDPD 471 Query: 491 TEAITSFRSVLAELGL---ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 E + + + + A LGL + G + D ++LL P ++ +LR++ +A Sbjct: 472 PERLNTLQQLAAGLGLRARRIQEGVRSA--DLSDLLRQAEGTPAQNIINHQVLRTLAKAR 529 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 YD + GHFGL L Y HFTSPIRRYPD +HR L +G + + +S E Sbjct: 530 YDNKPLGHFGLNLDDYCHFTSPIRRYPDTAIHR---ILTGVAEGITVDRLQKKYQDFSRE 586 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + L C E RA A R ++M +G F G++S T G FV+L + Sbjct: 587 AAV-LSSAC---ELRAQRAERQAEKCYMAEYMRRHLGETFDGIVSGATARGIFVQLVN-S 641 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 ++G V V + ++FD + SG+ +GD ++V+V A ++ +IDF+ Sbjct: 642 VEGFVGVEDFPDCEFQFDGLLTH-TDVRSGRRLTVGDPMKVQVAAADVATGRIDFT 696 >UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC1_9ACTN Length = 711 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 216/639 (33%), Positives = 313/639 (48%), Gaps = 48/639 (7%) Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF---- 190 G R A I V+ +VG Y T +G + P DSRL D I P+ R+G Sbjct: 72 GERRAVIEGVVERAAISVVGTYQTAGPLGVIEPLDSRLKADFFILPEDTSADRLGVHPGD 131 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VV + PTR I +G + + V + + +P+A + GL Sbjct: 132 AVVARILTYPTRLESGAVTIERRIGGDDAPDLGVQYVMARYGYTDSYPEAALDEAEGLSL 191 Query: 251 EVPEEAKAG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPS 309 +V K R DLRD ++TID DARDFDDAV E+ GG+RL V IADVS+YV Sbjct: 192 DVSAALKDPLRRDLRDRFVITIDPVDARDFDDAVSLERTPEGGYRLGVHIADVSHYVAWD 251 Query: 310 TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYK 369 +D EAR+R TSVY +V+PMLPE LSN LCSL P DRL ++ + ++GR+ Y Sbjct: 252 GHIDLEARHRTTSVYLADRVLPMLPERLSNDLCSLRPDEDRLAFTVDIELDAQGRVRHYD 311 Query: 370 FYEAVMSSHARLTYTKVWHIL---------------------------------QGDQDL 396 Y +V+ S R+ Y +L ++ Sbjct: 312 PYPSVIRSRVRMDYDGAEALLVRAGAVEYSVLEGAAEDVAAAEASREEALERGLACEEAA 371 Query: 397 REQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAH 456 R L L + L ++ + R RG + F++ E + + + + +I +R+ A Sbjct: 372 RGYNVDLGDFLVAANELAELRRRIRRARGSVDFDTAEIRALLDEDGVPVQIVARERSCAT 431 Query: 457 KLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL----ELPGGN 512 LIEE M+LAN A ++ A +R+H+ PS +++ LA+LG+ G Sbjct: 432 SLIEEAMLLANECVAEWLADRDIEACYRVHEDPSPDSLHGAAVALAQLGIIDDRRAAGIA 491 Query: 513 KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRR 572 P + +++ A +A ++ T+LLRSM++A+Y P N GHF LA Y HFTSPIRR Sbjct: 492 LGSPDELQAAVDAAAGTANAPLVNTLLLRSMQRALYKPRNEGHFALAAPCYCHFTSPIRR 551 Query: 573 YPDLTLHRAIKYLLAKEQ-GHQGNTTET----GGYHYSMEEML-QLGQHCSMAERRADEA 626 YPDL +HR +K LA EQ G + T G S+ +L Q+ + CS AER AD A Sbjct: 552 YPDLVVHRVLKLQLAYEQLGGKDALVRTPRLIGKGRESLPRILPQICRACSDAERAADAA 611 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 + + D++G + G +S V+ G FVRLD ++GLV + SL N+++ FD+ Sbjct: 612 SHATQKIKIAQYYEDRLGERYAGTVSWVSSMGLFVRLDLTQVEGLVSIKSLGNEWFEFDE 671 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L G +G Y LG RV + V VN +DF LI Sbjct: 672 DALTLTGADTGTRYELGQRVIIEVSRVNTTRGHLDFKLI 710 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 176/488 (36%), Positives = 274/488 (56%), Gaps = 22/488 (4%) Query: 224 VDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAV 283 +DI L + +P+ V + A +++ V E+ R DLRD ++TIDGED +DFDDA+ Sbjct: 200 IDIVLEKSKTIIDFPEDVLDESALIEDHVIEKDYQNRKDLRDKLIITIDGEDTKDFDDAI 259 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 Y EK + + L V IADV++YV+ ++ +D+EA R TS+Y P VIPMLPE LSNG+CS Sbjct: 260 YVEKNKDH-FLLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLSNGICS 318 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 LNP VDRL M ++ + +G + YE +++S RLTY +V D L Sbjct: 319 LNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSKHRLTYNQV-------NDFYNNKIKL 371 Query: 404 VKHLEELHN----LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLI 459 +LE++ N L K+L+ +++ G I+ E EE+K I + E + I+ QR + LI Sbjct: 372 DPNLEKMLNDSLELSKILENYKKDEGYINLEIEESKVILDKEGKTVGIKVIQRGLSEVLI 431 Query: 460 EECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+ AN + A + K K P+++R+HD PS E++ F L LG++ P+ + Sbjct: 432 ENFMVRANEAVAWKMNKLKLPSIYRVHDNPSIESLVLFEKTLKTLGIDFDTPKITSPKAF 491 Query: 520 AELLESVADRPDAE-MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 ++ E + + ++ M+LR+M++AIY +N GHFGLA Y+HFTSPIRRYPDL L Sbjct: 492 SDSFEKIKQNYQIDNFVKLMVLRTMEKAIYSDKNIGHFGLASSYYSHFTSPIRRYPDLQL 551 Query: 579 HRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 HR IK ++ + N E H+S+ + + S E A R + D K ++ Sbjct: 552 HRLIKQMVF----DKSNLKEKKN-HFSL-ILSDVSVQSSKKEVEAVSIERQINDIKKAEY 605 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 ++G K I S+ FG FV +D + GL+H+S+L + ++ + G L+ S+ Sbjct: 606 YESKIGKSLKAQIVSILSFGMFVEFEDK-VSGLIHISNLLGEDFQVSEDG--LLISSNKT 662 Query: 699 TYRLGDRV 706 Y+LG + Sbjct: 663 KYKLGQEI 670 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 216/727 (29%), Positives = 364/727 (50%), Gaps = 54/727 (7%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 L + K K S ELA L I ++ E L ++ + ++ T Y +PE L Sbjct: 8 LINYIKARKNVSFIELANYLKINRKDNKE-FSAYLVSLIKRNKIFKTFDSNYYVPELLRK 66 Query: 85 VKGTV-IGHRDGYGFLRVEGR---KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 G + + + + FL E K+ +++ + + + ++ D+V+A + D + R Sbjct: 67 QSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIA-SIYKDHNEKNPTR 125 Query: 141 ----IVRVLVPKTSQ-IVGRYFTEAGVGFVVPDD---SRLSFDILIPPDQIMGARMGFVV 192 +V +V + +Q I+G + F P D ++ F++L ++ ++ V Sbjct: 126 QLLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCFDKVKFELLNLSSKV---KINDCV 182 Query: 193 VVELTQRPTRRTKA-VGKIVEVLGD-NM-------GTGMAVDIALRTHEIPYIWPQAVEQ 243 + E+ + + K++ D N+ T + ++ + T + PQ V+ Sbjct: 183 LCEIKKYDKNLVSLEIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAESKLIPQEVDL 242 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + + K R +L +VTIDGE +DFDDA+ +K G + L V IADV+ Sbjct: 243 NI---------KEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADVA 293 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV+ T LD EA RGTS+Y + VIPMLP LSNG+CS+NP VDR + C++ + G Sbjct: 294 HYVKEKTNLDSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQHG 353 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQD---LREQYAPLVKHLEE-LHNLYK---V 416 YK Y++V++S RLTY +V D + L ++ + VK LE L N Y+ + Sbjct: 354 NNVNYKIYKSVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELSLI 413 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L K +E +G + FE E K N + ++ I+ +R + LIE+ M+ N A+++ Sbjct: 414 LHKYKEAQGYVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYLSD 473 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK--PEPRDYAELLESVADRPDAEM 534 K P L+RIH+ PS E + S ++ L LG+ + N D+++ + ++ + Sbjct: 474 LKMPVLYRIHENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRNDYF 533 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + + LR+M++AIY N GHFGLA + Y HFTSPIRRYPDL +HR + L +G Sbjct: 534 INLLFLRTMQKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHL------EG 587 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 +++ H+ ++ Q S +E++A E R V D +F+ Q G FK I SV Sbjct: 588 KSSQEILNHFD-SKLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTGQKFKAQIVSV 646 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 FG FV + GL+H S+ + Y +++ E+ ++Y++G+ V+V + A + Sbjct: 647 LNFGIFVEF-EFGGSGLIHKSNFFDGSYEANEMLTVFASET--KSYKIGEYVDVVIIATD 703 Query: 715 MDERKID 721 + E KID Sbjct: 704 LLEGKID 710 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 209/640 (32%), Positives = 326/640 (50%), Gaps = 29/640 (4%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 +L +GTV G +GF+ E + + +L ++M GD++ D KG+ +A + Sbjct: 46 NLQEGTVRGSAGRFGFVSNE-QGESFFLPPDEMAKVFPGDEIRFST-KEDDKGKTQAIVE 103 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 +++ G + FVVPD +L+ I IPP+ + E+T+ P Sbjct: 104 KLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPEACKDVNENDWLQCEVTRHPYP 163 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 + K KI++ LG G A+ + + WP + ++A L E+ GRVD Sbjct: 164 KGKPQAKILKNLGQLSEPGFERQYAITKFNLSHEWPDIISSELAILGEDRIPALSEGRVD 223 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 L D VTID E RD DDA+Y EK G +RL VAIAD S + P+T LDREAR+RG S Sbjct: 224 LSDHAFVTIDSEHTRDMDDALYAEKTEDG-YRLHVAIADPSAWFGPNTSLDREARSRGNS 282 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 +YFP + + MLP+ LSNGLCSL RL +VC +++ + G L Y+F EA ++SHA+L+ Sbjct: 283 LYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLSIGTDGELNHYEFKEATVTSHAKLS 342 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y +V L+G++D + A L L LH + L + R I + ++ Sbjct: 343 YNQVTEFLEGEKDAVK--AELQDSLLILHETTQALHQGRIRNNLIMEDRDDYYLTVGDNG 400 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL- 501 +++ I +T+RN A KL+EE M+ AN S A+F+ K +F H TE I + ++ Sbjct: 401 KLQSIVRTERNTAQKLVEEAMLAANKSCAQFL-KEIGIGIFVDHPGFRTERIGDIKQIVQ 459 Query: 502 -AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 E+G E GN E Y L+ +V + E ++T+L R + ++ Y E + H G+ Sbjct: 460 DKEIGFE---GNFAELEGYKSLIRAVDAKEFDEPIKTLLSRFLSRSEYSLEAKPHMGMGF 516 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 + Y FTSPIR+Y DL +HR IK L++++ + N +E + L Q + Sbjct: 517 ECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEIN-----------DETIALLQDALVTG 565 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 RR A WLK ++ N F GVIS + G V + +L +DG + + N Sbjct: 566 RR---AVNLAEHWLKLQYLDKLKENQFDGVISQINPGGLTVTITELGLDGFIDLRK--NK 620 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 F++ LM E QT+ L +V+V V+ ++ +RK+ Sbjct: 621 ALSFNRT--YLMFEGEKQTFTLDQKVKVEVKKADLVDRKL 658 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 211/705 (29%), Positives = 356/705 (50%), Gaps = 50/705 (7%) Query: 72 RRQCYALPERLDLVKGTVIGHRDG-YGFLRVE-----GRKDDLYLSSEQMKTCIHGDQVL 125 R Y +++ ++G + +G F+ VE G K ++SS T ++ D V Sbjct: 54 RDSSYVALRKINTIQGPIHFASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVE 113 Query: 126 A---QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV-----PDDSRLSFDIL 177 A +P+ D R A++ +++ + ++G + GFV P SF I Sbjct: 114 ADVFEPISPDN-NRTFAKVKKIIERRCKTLIG--VLDNVNGFVTFKPIEPIYKNTSFRI- 169 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRR--TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 + AR+ VVV E+ R + +I +V D M +++ A +P Sbjct: 170 --KNIASEARVLDVVVAEIINYENRNKEINIIKRITDV-NDPMAYVKSLEEA---RNVPR 223 Query: 236 IWPQAVEQQVAG-LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 +P V + + + E + E + R DLR+ +VTIDG +DFDDA+ K + Sbjct: 224 EFPAEVNEYIQKFIPENIKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYE 283 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 L V IADV+YYV+ +TPLD EA RGTS+Y ++V+PMLP LSNG+CSLNP +RL + Sbjct: 284 LGVHIADVAYYVKENTPLDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTIS 343 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLY 414 C ++ G+ K +V+ S RLTY +V + +D ++ L K L+ + L Sbjct: 344 CITKINKLGQSIETKIVPSVIKSKYRLTYERVNEFINESKDFEDK--ELNKMLKNAYELS 401 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 +++ + + ++G I FE +E +++ R+ I + ++ K+IE+ M+ AN A+F+ Sbjct: 402 QIIREFKNKQGYIDFEIQEPHIELDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFI 461 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP-EPRDYAELLESVADRPDAE 533 +K P ++RIH+ PS E I F VL L + + K P + +++ + + + E Sbjct: 462 TNSKLPMMYRIHEVPSEEKIEYFLEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDE 521 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 L+ + LR+M++A+Y P+N GHFGLA + Y HFTSPIRRYPD+ +HR + + K+Q ++ Sbjct: 522 FLKMLFLRTMQKAVYSPDNIGHFGLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNK 581 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 + + ++ S +E A + RDV D ++ ++ + F+G + Sbjct: 582 VDEFAAN--------LQKIAAMNSASEENAVQLERDVNDLKFAEYFKSKINSEFEGQVFG 633 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA 712 +T FG F++ D+ D +VH+S++ D D+ +Q+ + + Y+LG VRV Sbjct: 634 ITKFGMFIQFDNK-TDAMVHISNIGDGDFEANEQMTKLYSKNDPKKAYKLGQT--VRVVI 690 Query: 713 VNMDER--KIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRR 755 N DE KID L ++ R K K +KG +R Sbjct: 691 TNADETTGKIDCVL------AQDYKTYLRNKVSKNFNQQKGFNKR 729 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 304 bits (779), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 195/641 (30%), Positives = 330/641 (51%), Gaps = 32/641 (4%) Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 P+ ++ G + +G GF+++E + Y+ + + ++ D V PL + Sbjct: 74 PDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDLVEFAPLTVQNDWYK 133 Query: 138 ----EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV- 192 +A I++VL ++ VG Y V+PDD +L + +++ + ++ Sbjct: 134 HDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKLIYKVVLDRHYLELKEHDRILF 193 Query: 193 -VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 ++E+ Q R +V+ +G G+ +D H I + Q + + LK E Sbjct: 194 EIIEIKQGVIR-----AALVKKIGSKEDLGIDIDAIAYNHLIEPTFSQEIINEAKSLKYE 248 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + + K R DLRDL +TID A D DDA+Y +K + L VAIADV +YV+ P Sbjct: 249 LDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLKVAIADVCHYVKFDGP 308 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 +DR AR + TSVY ++VIPMLPE LSN LCSLNP VD+ +V ++ + G++ ++FY Sbjct: 309 MDRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGDLMIDGTGKIMSHEFY 368 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 A+++SH R +Y +V DL++ + + L+E L K+L + + +RG + F+ Sbjct: 369 PAIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAKILRRMKIKRGYLQFDV 428 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 +E + I + +A ++IE+ M+ AN + F K ++R+H KP+ Sbjct: 429 DETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFASKYNLDFIYRVHPKPAV 488 Query: 492 EAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + SF + L E+ G N + D + L + AD +++ +LLRSM +A Y Sbjct: 489 HKLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKLINKLLLRSMNKAYYSV 548 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH---QGNTTETGGYHYSME 607 EN HF LA + Y HFTSPIRRY D +HR + + Q + Q N ++ Sbjct: 549 ENTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTDLQRNELKS-------- 600 Query: 608 EMLQLGQHCSMAERR---ADEATRDVADWLKCDFMLDQVGNVFKGV-ISSVTGFGFFVRL 663 L + C + ++ A + RDV +L +M + +GN + V I+++T FG FV L Sbjct: 601 ---HLVEWCDLINKQELVAVDCERDVNAFLYVKYMSNFLGNWYHNVTINAITNFGMFVEL 657 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGD 704 D+ I+GLV +++++ DYYR+D L+G ++ + Y++GD Sbjct: 658 DN-GIEGLVRLNNINGDYYRYDPNTDSLIGRNTHKKYQIGD 697 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 186/504 (36%), Positives = 277/504 (54%), Gaps = 27/504 (5%) Query: 225 DIALRTHEIPYIWPQAVEQQVAGLKEEVPE-EAKAGRVDLRDLPLVTIDGEDARDFDDAV 283 +I + + +P +P+ ++ L + + E + R+DLRD+ VTIDG D++DFDDA+ Sbjct: 118 EIIAKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGADSKDFDDAI 177 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 EK ++L + IADVS++V + LDREAR RG SVY V PM P LSNG+CS Sbjct: 178 SIEK-LNDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFPHELSNGICS 236 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 LN V R M +T+ +KG + F+++V+ S RLTY +L G + + L Sbjct: 237 LNEGVSRFTMTVFVTIDNKGNVKESTFHKSVIKSSRRLTYDYAQDVLDG---IEQDEDWL 293 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 V+ L+ ++ K+L + R + G I F E + I + + +R + HK+IEE M Sbjct: 294 VELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEELM 353 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP---GGNKPEPRDYA 520 ++AN A+ ++ K +++R+HD P E + +F + G L GN D+ Sbjct: 354 LIANCEVAKRLKNIK-GSIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDADGN----LDFH 408 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 +ES+ +PD ++L T+LLRSMKQAIYD N GHFGL + Y HFTSPIRRY DL HR Sbjct: 409 SFIESIMGKPDEKLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYTDLLTHR 468 Query: 581 AIKYLLAKEQGHQG--NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 +K Q +G N T Y+ Q CS ER A E R + F Sbjct: 469 LLK------QSLEGVNNLKPTMQQFYT-----NSAQWCSKTERIAVECERSLDKVKAARF 517 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 M D+VGN + G++S +T FG FV ++D I+GL+ ++L + +YR+D+ Q E + Sbjct: 518 MKDKVGNEYNGIVSGITNFGMFVEIEDRGIEGLIRYATLKS-HYRYDEHEQAAYSEEDAK 576 Query: 699 TYRLGDRVEVRVEAVNMDERKIDF 722 Y LGDR+ + V V++ E IDF Sbjct: 577 WYTLGDRIRIVVYKVDVKELFIDF 600 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 201/649 (30%), Positives = 322/649 (49%), Gaps = 31/649 (4%) Query: 87 GTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 GTV +GF+ + EGR D++L E+M+ + GD+V + KG+ + + +L Sbjct: 26 GTVKSTNGRFGFVALDEGR--DVFLPPEEMQKVLPGDRVNVTEHEVE-KGKTQGVVDELL 82 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK 205 + VGRY + FV P+ ++ I IPP + GA+ + ++ + P + K Sbjct: 83 ESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKERKGAQPDDFIYCQIHRHPIKDGK 142 Query: 206 AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRD 265 K++ V+G G+ L ++ WP+ V+ Q L EE + GR D + Sbjct: 143 GQAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEVQTQADALTEESITSHREGREDRTE 202 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 P VTID +D DDA+ GW L +AIAD + + P +P + EA NR T++YF Sbjct: 203 QPYVTIDSPGTQDMDDALMA-TPNATGWTLSIAIADPTAMIEPGSPAEEEAFNRATAIYF 261 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 P + +PMLP+ +S LCSL P+V RL +VC++ V++ G L Y F++AV+ S +L+Y Sbjct: 262 PGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNNDGSLGDYSFHQAVIRSQGKLSYEL 321 Query: 386 VWHILQGDQDLREQYAP--LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 V H+++G +D + P + L++LH L K R E +S + E + + +R Sbjct: 322 VSHLIEGREDDEIKALPEAVANSLDQLHQAATALRKWRSEHALLSNDRPEFRLRLDENKR 381 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 I IE +N+AH+L+EECM+ AN AA F+EK + LF H + + R +L Sbjct: 382 IRVIEPAVQNEAHRLVEECMVAANRCAADFLEKQGQ-GLFIQHPGLRDDRADNIRKLLEG 440 Query: 504 LGLELPGGNKPEPRDYAELLESV----ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 L + + L++ AD P ++++L R + +A E H G+ Sbjct: 441 YAPHLAELDATSAEGFKALMKHTDGLQADVP----VKSILSRQLARAELGFEPAPHQGMG 496 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 L +Y FTSP+R++ D +HR IK L + N + E LQ Q Sbjct: 497 LAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQL--------ESLQTTQF---- 544 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 RA A + WLK D+ + +G I+ GFFVRLD ++G V L+ Sbjct: 545 --RARMAANTLEAWLKSDYAKGLPADPMEGTITRTMPSGFFVRLDCNGLEGFVSCKDLEG 602 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 + FD V RL+ +G+ ++L RV V V+ + R+I+F L+ +E Sbjct: 603 K-FSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQINFKLLEAE 650 >UniRef50_D2G831 Ribonuclease R n=2 Tax=Firmicutes RepID=D2G831_STAAU Length = 471 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/432 (37%), Positives = 256/432 (59%), Gaps = 19/432 (4%) Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 +IPM+P LSNG+CSLNP VDRL + C M + + GR+ ++ +++V+ S R+TY V Sbjct: 1 MIPMIPHRLSNGICSLNPHVDRLTLSCRMEIDASGRVVKHEIFDSVIHSDYRMTYDAVNQ 60 Query: 389 IL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERI 447 I+ + D ++REQY + L+ +L L + R+ RG I F+ EAK + N + + Sbjct: 61 IITEKDPNIREQYKEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEDGIPTDV 120 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 + QR + +LIE M++AN + A K P ++R+H++P ++ + F + G+ Sbjct: 121 QLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQPKSDRLRQFFDFITNFGIM 180 Query: 508 LPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 + G G P ++ E V RP+ ++ TM+LRSM+QA YD N GHFGL+ + Y HF Sbjct: 181 IKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHF 240 Query: 567 TSPIRRYPDLTLHRAI-KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 TSPIRRYPDLT+HR I KYL+ K + E + +++ +L +H S ERRA E Sbjct: 241 TSPIRRYPDLTVHRLIRKYLIEKSM----DNKEVKRWE---DKLPELAEHTSKRERRAIE 293 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD 685 + RD + K ++M+ +G+ F+G++SSV FG F+ L + I+G+VH++++ +DYYRF+ Sbjct: 294 SERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNT-IEGMVHIANMTDDYYRFE 352 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS--------SERAPRNVGKT 737 + L+GE + +R+GD V+V+V V++DER IDF ++ S+R R Sbjct: 353 ERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQ 412 Query: 738 AREKAKKGDAGK 749 A+ + K D K Sbjct: 413 AKTRGKSLDKSK 424 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 263/465 (56%), Gaps = 17/465 (3%) Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLRD ++TIDGED +DFDDA+ +K G + L V IADV++YV+ +P+D EA+ Sbjct: 239 NRTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYVKQDSPIDVEAQR 298 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTS+Y P VIPMLPE LSNG+CSL P VDR + E ++ +G K Y +V++S Sbjct: 299 RGTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGENLSIKIYPSVINSK 358 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY V + G + L K L+ L +L ++ +G I +E K I Sbjct: 359 WRLTYKDVNNFFNGKSSFND--TNLEKMLKTAQELNTILSLFKKNQGYIDLAIDEIKIIL 416 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + E ++ R + +LIE MI AN + + F+ K K P L+R+H+KP E I F Sbjct: 417 DEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRVHNKPDPEKIMIFN 476 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 +L LG++ R++A ++ + + + L+ +LR+M++AIY EN GHFGL Sbjct: 477 QILKVLGVKNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQKAIYSTENIGHFGL 536 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A Y+HFTSPIRRYPDL LHR I++ + ++ + + + E + + + Sbjct: 537 AANFYSHFTSPIRRYPDLILHRIIRFFIFEKNKN---------FDFFNEILTKNSYLTTE 587 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL- 677 E++A R + + K +++ +G F I+S+ GFFV ++ LF D ++ SL Sbjct: 588 LEQKAFNLERKIVNIKKTEYVKKLIGQTFNAQITSIIKSGFFVEINGLF-DAMLSNKSLP 646 Query: 678 --DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 +ND Y+ + G + +S + ++LG+ +++++E+VN+ E KI Sbjct: 647 NNENDPYQLTEDGFCIY--NSRRRFKLGEFIDIKIESVNVWEGKI 689 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 169/507 (33%), Positives = 277/507 (54%), Gaps = 22/507 (4%) Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 + +P +P+ E+ + + + R D R+ TID ++A+DFDDA+ +K Sbjct: 94 YNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLTFTIDPQNAKDFDDALSIKKLSN 153 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 + + V IADV++Y++P + +D+EA RGTS+Y +VIPMLPE L N +CSL P D+ Sbjct: 154 NFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVIPMLPESLCNEVCSLRPNEDK 213 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 LC + K ++ Y+ ++ S R TY + I++ + L + L Sbjct: 214 LCFSVIFEMDGKAKIHNYRIRRTIIRSDHRFTYEEAQEIIERSFATNYEDCSLNSSVFTL 273 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 + L K+L + R G I F E +F + E I + N+A++L+EE M+LAN + Sbjct: 274 NCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYLKKNNEANQLVEEFMLLANKTI 333 Query: 471 ARFV-----EKAKEPALFRIHDKPSTEAITSFRSVLAELG--LELPGGNKPEPRDYAELL 523 A V K +P ++R+H P E I + + ++ G L + N ++ + L Sbjct: 334 AEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSFGYKLNIKRINNETSKNISSLF 393 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI- 582 + V + +++T+ LR+M++AIY EN GH+GLA + Y HFTSPIRRYPD+ +HR + Sbjct: 394 KQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKYYTHFTSPIRRYPDMIVHRLLE 453 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 KYL K Y S + + +L +HCS E A +A R + +FM + Sbjct: 454 KYLNRK-------------YSVSKKSLERLCKHCSEQESIAIQAERASIKAKQVEFMSTK 500 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 VGN F GVIS+VT +G +V L + +GL+ + LD+D+Y D+ RL+G++ Y L Sbjct: 501 VGNTFDGVISNVTEWGLYVELGN-GCEGLIPMRYLDDDFYELDEKTYRLIGKTKKHIYCL 559 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSER 729 GD +++RV N+++R++DF+ IS ++ Sbjct: 560 GDPLQIRVIHSNLEKRQLDFAPISFKK 586 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 221/659 (33%), Positives = 332/659 (50%), Gaps = 43/659 (6%) Query: 95 GYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--------RREARIVRVLV 146 GY F V+ + + ++ + ++ GD V L + +G R AR+VRV++ Sbjct: 16 GYAF--VQTAEGEFFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAGPDRPAARVVRVVL 73 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 IVGRY G VVP+D R+ DI + G +V V +T P RR A Sbjct: 74 RAHESIVGRYEVAEPFGIVVPEDPRIKHDIFTLRADAPHVQHGDIVRVRMTVYPNRREPA 133 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV-DLRD 265 G + EVLG GM V++ + H++ + V + VA E +G D+R+ Sbjct: 134 QGVVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVAHAAVGEAEALSSGDYRDIRN 193 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 + TID DA+DFDDA+ +K GG RL V IADVS+YV ++P D EAR R TSVY Sbjct: 194 RVVFTIDPADAKDFDDALSFDKV-GGYLRLGVHIADVSHYVPWNSPTDLEARRRSTSVYL 252 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 +V+PMLPEVLSN +CSL P+ R M ++ ++ + Y +++ S ARL Y Sbjct: 253 VDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETFSVHHVDAYPSIIESCARLDYDT 312 Query: 386 VWHILQ----GD--------QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V G+ QD+ + ++ L L + L + R +RGG+ F+ E Sbjct: 313 VQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGLKRVSVGLHERRLKRGGLDFDGVE 372 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 AK + E R ++ + A L+EE MI AN + AR + P+++R+H+ P+T Sbjct: 373 AKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAVARLLRDGAIPSIYRVHEPPATGD 432 Query: 494 ITSFRSVLAELG----LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 +++ +L E G + + +P +++ R + ++ T+++R+M QA Y Sbjct: 433 LSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKAKGRLEEPLVSTLVVRAMTQARYV 492 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE- 608 HFGL ++Y HFTSPIRRYPDL +HR +K L G T T S EE Sbjct: 493 DACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKLF------GRTETT-----SAEEA 541 Query: 609 -MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + + H S ER+A+ A R+ + + + + +G F G++S VT GFFVRLDD Sbjct: 542 ALATIAAHASEMERKAETAARESQELKLFELLEEHIGEEFDGLVSGVTASGFFVRLDDTS 601 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 +G V + +Y+ D L G SG YRLG RV +RV V ERK DF L++ Sbjct: 602 -EGFVSLRRA-QEYFILDPERYTLTGSDSGVVYRLGARVRIRVRDVYPFERKADFDLVA 658 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 202/695 (29%), Positives = 338/695 (48%), Gaps = 52/695 (7%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKD---DLYLSSEQMKTCIHGDQV---LAQPLGADRKGR 136 D+V G + H G+GF++V K+ D+++ K + GD V L Q + +D+ Sbjct: 94 DVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGDVVEVILNQEVISDKGP- 152 Query: 137 REARIVRVLVPKTSQIVG--------RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 E +IV +L + + G R F A V + +++ P + ++ Sbjct: 153 -EGKIVAILSRGRTHMAGIIRQLDKDRMFI-AHVPLLGTQQR-----VVVHPTEEHQLQI 205 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 G +V+E+ ++ T+ + + LG V A+ E+ + A ++ L Sbjct: 206 GDRIVMEVIDWGSKETETICRFSHYLGHISDPSCDVYAAIEEFELRSDFQTAAIEEANNL 265 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 + V ++ R DLR+L +TID + A+DFDDA+ + G + L V IADVS+YV+P Sbjct: 266 GKSVSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQP 325 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 T LD EA+ R S YFP +PMLP LS LCSL P V+RL + M + S G L Y Sbjct: 326 GTALDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLDY 385 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 +F +V+ S R TY + +L G ++ +P HLE + L ++L + R ERG I Sbjct: 386 RFTRSVIKSAKRFTYKEAKKVLDGQKN-----SPYKPHLELMVELCRLLKQKRYERGSIE 440 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 F E + + + + E + H+++EE M+ AN A + + + +RIHD+ Sbjct: 441 FSLPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDE 500 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 PS E + F ++ A G +LP + P P+D +L E A+ + L + +R M+ A Y Sbjct: 501 PSEENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAY 558 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 EN GH+GL+L Y HFTSPIRRY DL +HR + G ++ Sbjct: 559 SAENIGHYGLSLTHYCHFTSPIRRYVDLVVHRIL-----------------FGESDRFDD 601 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLD 664 + ++ +CS ER + +A V K + ++ ++ +I+ V FG + + Sbjct: 602 LQEIANYCSEQERISAKAENSVVILKKLRLLEERHQKAPEHEYQAIITRVKNFGIYFEIF 661 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 DL ++G +H+S L DY+ +++ L G G Y GD + V +E ++ ++ + + Sbjct: 662 DLLLEGFIHISDLGEDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEKIDFISQETKWYV 721 Query: 725 ISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 + S P+ AR+++ + K K+ GK Sbjct: 722 LPSVSTPKK--SIARKRSASKEYQKHLNKKCSTGK 754 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 215/648 (33%), Positives = 321/648 (49%), Gaps = 44/648 (6%) Query: 112 SEQMKTCIHGDQVLAQPLGADRKGRREARIV----RVLVPKTSQIVGRYFTEAGVGFVVP 167 +E + GD+V+ + + A R+GRR + RVL +VG VVP Sbjct: 189 AEDTDVALPGDRVVVR-VFAGRRGRRPGEKIGGVERVLERGRDTVVGDLRRRGRDYLVVP 247 Query: 168 DDSRLSFDILIPPDQIMGARM----GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMA 223 DD R +++ + G + G VVV+L R G+I LG Sbjct: 248 DDPRFVYEVAVSDPARSGVKPAPQPGDKVVVKLHAWNRRHDPLTGEIESRLGRTHEPQAE 307 Query: 224 VDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAV 283 + + + + +P VE++ A L + V AGR+D R+ P+ TID +DA+DFDDA+ Sbjct: 308 LLAIFQKYNLVTTFPADVEREAATLPDRVHPRELAGRLDYREQPVFTIDPDDAKDFDDAL 367 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 E GG R+ + IADVS YVRP T LDREA+ RG S Y VIPMLPE LSNGLCS Sbjct: 368 SYEPLHGGDVRVGIHIADVSTYVRPGTALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCS 427 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL-REQYAP 402 L DRLC +T + GRL F + S RLTY + + L + DL R + P Sbjct: 428 LVEGQDRLCKAVFLTFAKNGRLKETTFANTAIRSRKRLTYKQAY-ALMFEHDLDRIRALP 486 Query: 403 L-VKH----------------LEELHN----LYKVLDKAREER---GGISFESEEAKFIF 438 L KH L +L + L+K+ + R +R G + + E K Sbjct: 487 LPPKHQTGSTGRALSALSDAELVDLQSWVRALWKIASRLRHDRMAHGSLDLDMPETKIFV 546 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + +R+E+ + +++H+LIEE M+ AN + AR P+L+R+HD+P + + +R Sbjct: 547 DEQGYADRLEKIEHDESHQLIEEFMLAANEALARLTRTHSLPSLYRVHDEPDPDKLDEYR 606 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 +LA + G+ + +L+ +++ P L+T LLRS+++A Y GHFGL Sbjct: 607 QLLATFDIHT--GDLTRREELVKLIRTLSTHPQGYTLRTQLLRSLRKAAYRATADGHFGL 664 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 + Y HFTSPIRRY DL +HR + L K HQG G Y++ + LG+H S+ Sbjct: 665 NKKDYTHFTSPIRRYADLVVHRVFDFYLVK---HQGGRPAHGHTSYNLGHVESLGEHLSL 721 Query: 619 AERRADEATRDVADWLKCDFMLDQVG----NVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 E + EA R+ +F ++ F V++ V GFFV L + G V Sbjct: 722 TEINSAEAERESVKVKLLEFFERELAKKKKTPFAAVVTDVRQNGFFVELVESMTFGFVPT 781 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 +L +D+Y + G G + + + DR+EV VE V+ +R IDF Sbjct: 782 HTLSDDHYVLNNAGTMFTGRRHKRRFAVNDRIEVVVEKVDRYKRLIDF 829 >UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 291 bits (746), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 223/760 (29%), Positives = 376/760 (49%), Gaps = 66/760 (8%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY----ALPERLDLVKGT 88 +P+ ++A L ++ + E +RR ++ + +G+L++ A+ D ++GT Sbjct: 21 RPSKPKQIAALLELDADGYRE-VRRVIKQLVLEGRLIYGGNHLVVAAAAVGGPTDQIRGT 79 Query: 89 ---VIGHRDGYGFLRVE---GRKD-----DLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 +G G+GF+R G D D+++ + + GD ++A + R+G Sbjct: 80 FRRAMG--GGFGFVRPSSGGGNADADVPEDVFVPTGMTAGALEGD-LVAVTIEPSRRGGI 136 Query: 138 EARIVRVLVPKTSQIVGRYFT---------EAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 E ++V VL Q G +F+ + G VV D + ++ + + G + Sbjct: 137 EGKVVEVLQRARRQFTGTFFSSPQPDQPGSDTIEGPVVYLDG-VHYEAPVSVGDVRGLPL 195 Query: 189 G-----FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-----IWP 238 FV +V+ + +AV I+E LG + + +R + +P + Sbjct: 196 QDGDKIFVEIVDFPDEESGGGEAV--ILERLGSSKNPAIDTLTIMRQYALPDEFSEDVLD 253 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 +A EQ A + VP + K DL D+ +TID DARDFDDA+ +++ G WRLWV Sbjct: 254 EAREQADAFDDDVVPTDRK----DLTDMLTITIDPFDARDFDDAISLQRE-DGRWRLWVH 308 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS++V P LD EAR RGTSVY P +VIPM+PE++SN L SL P+ RL E+ Sbjct: 309 IADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIPEIISNHLASLQPERMRLVKTVEIE 368 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA-PLVKHLEELHNLYKVL 417 + +T + + A + S R Y ++ + ++ + + + L +H L + Sbjct: 369 MLDDLTITHSEVHNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELLTHMHTLAMQI 428 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 K R + G +S + + K + +++ QT+ ++H++IEE M+L N + A +++ Sbjct: 429 RKRRFKDGALSMDMPDIKLELDRTGKVKGAYQTENTESHQIIEEFMLLGNEAVATWLDDQ 488 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAELLESVADRPDAEMLQ 536 + L RIH P + S + +LGL G + E R + +L+ VA + Sbjct: 489 ELNFLHRIHAPPERRKLRQLTSFVKDLGL---GFDNVESRFEIQAVLDKVAGTTLENAVN 545 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 +L+SM +A+Y P GH+ L + Y HFTSPIRRYPDL++HR ++ L+ Q +T Sbjct: 546 FAVLKSMSKAVYGPHREGHYALDKEHYCHFTSPIRRYPDLSVHRLVQRLI-----EQKST 600 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + S E+++LG CS AER A +A R++ F+ + G + VIS V Sbjct: 601 PDE-----SFAELVKLGHECSDAERNAAQAERELIQLKLLHFLKKKQGETLEAVISRVFA 655 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 G R L +DG + V+ L +D YRF++ GQ L G SG +RLGD + VR+ V++ Sbjct: 656 DGIHARCLKLPVDGFIPVTELPSDQYRFERRGQSLTGFKSGNRFRLGDHLTVRIGKVDLQ 715 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 +R++ ++ + A + + + G KK R Q Sbjct: 716 DRQLYLEVVKNHSAAK-----SDPRGPSGSKSKKSPLRHQ 750 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 291 bits (745), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 206/684 (30%), Positives = 340/684 (49%), Gaps = 63/684 (9%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK--------GR 136 +G ++ R+G F+ + R+ L+ +HGD+V + + ++ GR Sbjct: 6 TRGVLVFRRNGNAFVEIRNRQKSFQLAKAATACALHGDEVEIRQVSPRKRKPGQRKATGR 65 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVV-PDDSRLSFDILI----PPDQIMGARMGFV 191 R +V+V+ +G + G G+++ P+D RL + + PP+ + G + Sbjct: 66 RSYEVVKVVSRSLDHFLG-FAQRQGKGWMIRPEDRRLHTNFALSGEMPPNLVDGEK---- 120 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA-LRTHEIPYIWPQAVEQQVAGLKE 250 V+V+ ++ G+I+ VLG G M I L +++P + + VE ++ + Sbjct: 121 VLVQFVDWGQPQSLPRGRILRVLGP-AGDPMTDHIGILAKYKLPNRFSRKVESELNTIPR 179 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 +V ++ GR DLRD +T+D DARDFDDA+ +GG + V IADVS YV P + Sbjct: 180 QVRQQDLKGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPES 239 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 +D+EAR RG S Y +V+PMLP+ LSNG+CSL DRL T KG + G+ Sbjct: 240 AIDKEARRRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHHV 299 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDL---REQYAP-------------------LVKHLE 408 EAV+ S RLTY + +L + DL R P L+K Sbjct: 300 TEAVIRSDKRLTYEQA-KLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQS 358 Query: 409 ELHNLYKVLDKAREER---GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIL 465 L NL+ D+ RE+R G + +E K + + ER+ + +++H+LIEE M+L Sbjct: 359 TLRNLWSFADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLL 418 Query: 466 ANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLES 525 AN + A+ + + + PA+ R+HD P E + RS A G+ G+ + L Sbjct: 419 ANETVAKELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFGISC--GDLNHRKAMTALTSK 476 Query: 526 VADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYL 585 + + P +++L+ LLRS+++A Y GH+GLA Y HFTSPIRRY DL +HR I+ Sbjct: 477 IKNHPISQVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQ 536 Query: 586 LAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV-- 643 L +G+ T +S ++ ++ H S ER + +A R+ + ++ Sbjct: 537 L------RGSRTTA----HSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKE 586 Query: 644 GNV--FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD-NDYYRFDQVGQRLMGESSGQTY 700 NV + +I+ + GFFV L D G V + +L ++ YR + + +T Sbjct: 587 NNVRPHEAIITQIGRRGFFVELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTL 646 Query: 701 RLGDRVEVRVEAVNMDERKIDFSL 724 ++G R++V ++ V+ DE+ +DF L Sbjct: 647 KIGQRIKVMIDRVDQDEKLLDFRL 670 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 224/660 (33%), Positives = 338/660 (51%), Gaps = 40/660 (6%) Query: 95 GYGFLR-VEG-RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQI 152 GYGF + + G K +++ ++ + GD++ + + + + E RI ++ K ++I Sbjct: 7 GYGFAQPLSGDEKRSVFIPPGYLRGALDGDEI--EVVAWESEKGLEGRIEAIVTRKRTRI 64 Query: 153 VGRYFTEAGVGFVVP-DDSRLSFDILI--PPDQIMGARM------GFVVVVELTQRPTRR 203 VG E G G+++ DD R+ + ++ P G++ G VVV + P R Sbjct: 65 VG-VLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNYPGSR 123 Query: 204 TKAVGKIVE-VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 + VE VLG+ V L I + V + A + E V +E R D Sbjct: 124 DPEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEAAEVPEIVLDEDLENRAD 183 Query: 263 LRDLPLVTIDGEDARDFDDAVYCE----KKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 LR L +TID DARDFDDAV E + +RL VA+ADVS+YV+ T +D EA+ Sbjct: 184 LRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTAIDEEAQR 243 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R S Y P + IPMLP LS+ +CSL P+ DRL MV M V++ G+ + ++ A++ S Sbjct: 244 RCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEHEVRAAIIHSR 303 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY +V L+G + L ++ V L + L AR RG I + EAK + Sbjct: 304 RRLTYAEVAEELEGAEQLGKKARGRVFALRACSDR---LRNARMRRGAIELDLAEAKVVL 360 Query: 439 NAE--RRIERIEQTQRND----AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 + RI + +++ + A+ LIEE MI AN + + PA+FR+HD P E Sbjct: 361 EEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFRVHDLPDEE 420 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 +T+ LG + PR + L+ + + A L ++LR+M QA Y EN Sbjct: 421 KLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMAQAQYAVEN 480 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT---ETGGYHYSMEEM 609 GHF LA +Y HFTSPIRRYPDL HR +K +AK+ G G G S + Sbjct: 481 VGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMPGREASEAQA 540 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 L+ S ER A R+ + FM D++G+ F G +S ++ FG FV+++ ++D Sbjct: 541 LR----SSEREREISGAERETQNLFAALFMRDRIGDRFDGRVSGMSQFGLFVQIESPYVD 596 Query: 670 GLVHVSSLDND----YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 G+V V+ L+ D YYR D+ G R++GE SG+ +GDRV V + V++ R+ID LI Sbjct: 597 GMVKVADLEKDRKEPYYR-DETGVRMVGEKSGKVITVGDRVVVDLVDVSVGRRQIDLYLI 655 >UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQK5_9SYNE Length = 779 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 219/738 (29%), Positives = 369/738 (50%), Gaps = 56/738 (7%) Query: 40 LAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGF- 98 L +L+ EE + L L A+ER L +R + Y E D+++G + G+ F Sbjct: 23 LEKKLNCNTEEAVRDLHIALTALERTNVLEKSRGK-YRKIENEDVIEGKLRCSSKGFCFA 81 Query: 99 LRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYF- 157 ++ E DD+Y+ Q+ T +GD+VL Q + R V++++ + ++ V Sbjct: 82 IQDEEGADDIYVRESQLNTAWNGDRVLVQVTKDGSRRRSPEGEVKLILERANESVLAKVK 141 Query: 158 ---TEAGVGFVVPDDSRLSFDILIP-PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEV 213 T A +P D RL F++ I ++ + + ++ VE+T+ P + GK+ + Sbjct: 142 AAETAADKFKAIPLDDRLLFELDIAESEEDLSEAIDHLIHVEITRYPIAQHPPQGKVSRI 201 Query: 214 LGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDG 273 LG + VDI H++P I+ + V GL V + GRVDL + +TIDG Sbjct: 202 LGSDAEDAADVDIVYCKHDLPRIFSEEVFIAARGLPNRVRKSDIKGRVDLTEHAALTIDG 261 Query: 274 EDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPML 333 +A+ DDA+ + G RL + ++DV++YV+P+ +DR AR+RG +VY +++PML Sbjct: 262 SNAKVIDDAISLDITDDGYRRLGIHVSDVAHYVQPNDVIDRTARSRGMAVYLGDEIVPML 321 Query: 334 PEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL--Q 391 P + N LC+L P DRL + +T+ G++ Y+ +V+ +LTY + IL + Sbjct: 322 PPPIPNALCALVPDKDRLAISILITMDDDGQVLEYEIQPSVIQVSHQLTYDQAQAILVRE 381 Query: 392 GDQDLR---------EQYAPLVKHLEELHNLYKVLDKAREERGGISF---------ESEE 433 D++L E++ P++ ++ L+ L + + + R ERG E+EE Sbjct: 382 EDEELEKLGFSPDDIEEFEPVMDLIDSLYQLSQEVKQRRHERGSFELNLPQHEFPPEAEE 441 Query: 434 ------AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 KF ++ E + + A ++ E M+LAN AR +++ P L+R+H Sbjct: 442 LAEYLSPKFQYDDEGSFGAMVVSDHMPARIIVTEFMLLANQLVARHIKELGIPGLYRVHR 501 Query: 488 KPSTEAITSFRSVL--AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 P + + E+ L+L + P DY E ++L +LL ++K Sbjct: 502 TPELADVQELVKLANNMEIDLQLEDVEQVAPSDYRNFTEQFKASKSEKVLTYLLLATLKP 561 Query: 546 AIYDPENRGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIKYLL----------AKEQGHQG 594 A+Y HFGLA+ +Y HF SP+RRYPDL +HR + + +K++ + Sbjct: 562 ALYSARPGPHFGLAIDDAYTHFASPVRRYPDLLVHRLLHAVFKHGRDRRSTRSKDRVNLR 621 Query: 595 NTTETGGYHYS---------MEEMLQLGQ-HCSMAERRADEATRDVADWLKCDFMLDQVG 644 +++ G ++S MEE L + ER +A D+ K FM G Sbjct: 622 HSSCHGKINWSVLPPAVQQEMEEQLTRAPIKLTERERITQDAESDLEGLKKAAFMQAHTG 681 Query: 645 NVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGD 704 VF G+I+ V +GFFV L++L ++GLVHVSSL +D+Y + Q+L+G + Q YRLGD Sbjct: 682 EVFHGLITGVQSYGFFVELEELLVEGLVHVSSLKDDWYEYRSRQQKLVGRKNRQQYRLGD 741 Query: 705 RVEVRVEAVNMDERKIDF 722 VEV V++V+ ++ID Sbjct: 742 HVEVEVKSVDYYRQQIDL 759 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 184/655 (28%), Positives = 327/655 (49%), Gaps = 30/655 (4%) Query: 87 GTVIGHRDGYGFLRVEGRKDDL-YLSSEQMKTCIHGDQVLAQPLGADRK-GRREARIVRV 144 GT+I + F +++ K+ Y++ + + + ++ D V + + ++A + ++ Sbjct: 83 GTIIINGKADAFFKIKDEKESFAYINKKNLNSALNNDTVEICLMDKNTYPDLQDAVVTKI 142 Query: 145 LVPKTSQIVGRYFTE-------AGVGFVVPDDSRLSFDILI--PPDQIMGARMGFVVVVE 195 + G Y+ + G+ +VPDD +++ I + D + G ++ F Sbjct: 143 IERDRDFFTGTYYLKPTRNKFKKGIELIVPDDKKINLKIELDDSSDLVNGNKVLF----- 197 Query: 196 LTQRPTRRTKAV--GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 + R + V + ++LG G + + + I + + +++ + + Sbjct: 198 ---KIARISDGVIYCSVSKILGHIDDVGNDIISIVYDNNIDPEFDEETKEETSKIDFGFS 254 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E A R DL + VTID ++D DDAV K + G ++L+VAIADVSYYV+ + L Sbjct: 255 QEEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKDGTYKLYVAIADVSYYVKLHSNLW 314 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 R A RGTS+Y +QVIPMLP LSN +CSLNP R VCEM + G T + Y A Sbjct: 315 RSALKRGTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKNGEFTNIQVYPA 374 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 ++ S + Y V ++ + + E + + L L L+K RE+ G I+F+ +E Sbjct: 375 IIFSKYKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSFELDDYLNKKREKDGYINFDIKE 434 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKE-PALFRIHDKPST 491 AK I + +I+ + + A K+IE M+ AN + +F + P ++R+H KP Sbjct: 435 AKIILDENEKIKDVVIRETGPAQKMIENFMVAANEAVTLKFHQLCPNLPFVYRVHAKPEE 494 Query: 492 EAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + I F+ ++G +P ++ LE + P+ +++ +LLR+M +A Y Sbjct: 495 KRINDFKIEADKIGFIYDRNLTSWKPNTVSKWLEKNKNNPNKDLINMILLRTMAKAKYQT 554 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 N GHFGL++ +Y HFTSPIRR D+ +H ++ + + + + + Y + + Sbjct: 555 ANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYEPENYSEQEKD-----YILCNLD 609 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + E A E RDV ++M +++G + G +S +T FG FV+L++ I+G Sbjct: 610 DFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCEYNGFVSYITNFGVFVQLENT-IEG 668 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 LV + +DYY F+Q +G + + LG +V++RV N + +KIDF +I Sbjct: 669 LVKPMFIKDDYYVFNQKDLTYVGRNKNRVISLGQKVKIRVVDANKETKKIDFEII 723 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 196/662 (29%), Positives = 325/662 (49%), Gaps = 32/662 (4%) Query: 86 KGTVIGHRDGYGFLRVEGRKD---DLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 KG H G+GF+ E D D+Y+ K + GD+V + + R +I Sbjct: 17 KGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMDGDKVTVKVTYPKTEKRGASGQI 76 Query: 142 VRVLVPKTSQIVGRYFTEA-----GVGF---VVPDDSRLSFDILIPPDQIMGARMGFVVV 193 ++ VG Y + + +G+ + + R+S D L + G + VV Sbjct: 77 TKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDRIS-DTLYIKQPLSGVQEEDVVS 135 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +++TQ PT GKI ++G G+ + L +IP + + E++ Sbjct: 136 LKITQYPTNTKTFEGKITGIIGHKGEVGLDILEVLCAMKIPQEFSSETLAEAEAFSEKLT 195 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + R D R+ TIDG+D++D DDA++ +K + L V IADVS+YV + LD Sbjct: 196 DSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYVTEGSSLD 255 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +R TSVY +V+PMLP LSN LCSLN +RL M C M + KG++ YK + Sbjct: 256 EEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLTMSCLMEIDDKGKIVSYKISPS 315 Query: 374 VMSSHARLTYTKVWHIL----QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 V+ + R+TY V ++ +G ++ E + + ++ L+++L+ R++RG I F Sbjct: 316 VIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIKVAVELHEILETMRKDRGMIEF 375 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + EAK I + + I + R+ A ++IE M++AN + A +K K P+L+R+HD P Sbjct: 376 DESEAKIILDEKGHPIEIVKRDRDTAERMIESFMLMANETVALDFQKKKLPSLYRVHDNP 435 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 ++ A G L + +A+ ++ + + L L +M A+Y Sbjct: 436 KEKSFAKLMEAAANAGFSLNSDSHQAINFFADEIKGTSSE---KALTYQLRHTMSTAVYS 492 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 +N HFGLA +Y HFTSPIRRYPDL +HR + + H + + E + Sbjct: 493 EKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNHTKDEWK--------ERL 544 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 ++ H S E RA R + K ++M +++G V+ G I+ + FG FV LD+ ++ Sbjct: 545 PEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIGEVYTGTITGLQKFGIFVALDNT-VE 603 Query: 670 GLVHVSSL---DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 GL+ V +L + FD+ G+ S Y++G +++RV A N + +DF I+ Sbjct: 604 GLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQIGQEIKIRVIAANKRKGTVDFEQIA 663 Query: 727 SE 728 E Sbjct: 664 PE 665 >UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVL2_RUBXD Length = 535 Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 197/524 (37%), Positives = 279/524 (53%), Gaps = 42/524 (8%) Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 GA G +V+V +R + G++V V+G + + + + +P+ VE++ Sbjct: 34 GAEAGDLVLVRARER---KGSLRGEVVRVIGPSSDPRNVYEALFASIGVSRSFPRGVEEE 90 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 E V + R DLR LP VTIDGEDA+DFDDA+ ++ GG+RLWV IADV++ Sbjct: 91 ----AEAVAGRSFGERRDLRRLPTVTIDGEDAKDFDDAISILRE-DGGYRLWVHIADVTH 145 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV P LDR+A RG SVY P V PMLP LS +CSL P DR + E++VS +G Sbjct: 146 YVDPGGALDRQALYRGNSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTVEISVSGEGE 205 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + G+K Y +++ S ARLTY V L+G ++ + LV+ EL K R Sbjct: 206 VRGWKVYRSLICSDARLTYEAVDAFLEGRGEIEQP--ELVRTAFELSRRLKTNAAV---R 260 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + ES E ++ + E A +LIEE MILAN+ AR + + + A+FR Sbjct: 261 GKLELESREPEYEVDEEGVPVAASMRPSTPARELIEELMILANVCVARELRR-RRGAVFR 319 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 +H++PS E + LA +G+ + +P P E L ++A + L ++LRS+ Sbjct: 320 VHERPSPEDLELLAERLAAVGVRV----EPTP----ENLGTIARMLKSRALGYLVLRSIP 371 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 +A+Y P N GH+GLAL+ Y HFTSPIRRY D+ +HRA LL E N E H Sbjct: 372 RALYSPGNVGHYGLALEDYTHFTSPIRRYADVLVHRA---LLGDELPE--NLPEV-AEHI 425 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 S E + + ER ADE T WL M D+VG VF+G + S T FG FV ++ Sbjct: 426 SEREWQSM-----ICERTADEYT---LMWL----MRDRVGEVFEGTVVSTTSFGLFVEME 473 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 GLVH S L ++ + G L + G +YR+GDRV V Sbjct: 474 T-GATGLVHASKLPG-WWELEPSGVVLSNDEIGASYRVGDRVLV 515 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 186/655 (28%), Positives = 325/655 (49%), Gaps = 25/655 (3%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARIVRV 144 +G + + G GF++ + + + Y++ + + + D V L + K ++A ++ + Sbjct: 77 QGIITINSKGDGFIKEDNTEIEYYVNKKYLNGALKKDSVKFVKLKKEPKNNLQDAAVIEI 136 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + VG++ T G+ + D L F + I G G ++ ++ + T+ Sbjct: 137 VGHAKDHYVGQFITLPNGGYYIFVDDPL-FYLNINLKDTTGLVNGHKILFKIISQTTK-- 193 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 A+ ++V ++G G V + + I P PQ V+ + L+ V E R + Sbjct: 194 DAIAELVHIIGHKNDVGSDVLSIVYDNGIDPTFDPQVVDL-ASKLEFYVDEHQNKIRRSI 252 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 D +++ID ++D DDAVY +K + L ++IADVS+YV+P+T LD +A RGTS Sbjct: 253 IDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTST 312 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y +VIPMLP +SN +CSLN R+C+ C+M + G++ Y A+M ++ +++Y Sbjct: 313 YLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSY 372 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 +V +G + + L E L+ +L + + G + F+ +E K I + Sbjct: 373 DEVNDFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPKIILDETGV 432 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKE----------PALFRIHDKPSTEA 493 I+ +R A ++E+ MI AN + F E+ + P ++R+HDKPS Sbjct: 433 PIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKPSIIN 492 Query: 494 ITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + F +L + +P + L+ + + ++ +LLRSM +A Y+ N Sbjct: 493 LQKFEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLRSMAKASYEIIN 552 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA +Y HFTSPIRRYPDL +HR + + Q + T + L+L Sbjct: 553 TGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSY------TDKQRVELVNKLKL 606 Query: 613 -GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 + + E A + RDV ++M +G F GV+++V+ FG FV L++ I+GL Sbjct: 607 ITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFVELENT-IEGL 665 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + + +L +D+Y F L+G+ + +G++V VRV N RKIDF L++ Sbjct: 666 IRIKNLKDDFYDFIPENMTLVGQKRKKIITVGNKVRVRVIEANKLTRKIDFELVA 720 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 228/751 (30%), Positives = 367/751 (48%), Gaps = 52/751 (6%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP-ERLDLVKGTVIG 91 +P S+ ELA L+++ ++L+ R + ME +G+LV ++ YAL ER +LV G + Sbjct: 19 EPQSKSELARALNVDSRQKLD-FRALVDQMEEEGKLVRLQKGRYALKRERRNLVHGMIRI 77 Query: 92 HRDG-YGFLRVEGRK------------DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 R G FL +G +L L + T + GD+V + +RK R Sbjct: 78 LRSGKILFLPRKGDPAAAALGWDTEAVPELELKPNHLGTALDGDRVAVR---VERKAARG 134 Query: 138 ----------------EARIVRVLVPKTSQIVGRYFT-EAGVGFVVPDDSRLSFDILIPP 180 +AR+ V S+ +G + T + G V+ D I + Sbjct: 135 RRNIRRNRFSSPDADMKARVEEVTERARSRWLGVFRTGKNKPGRVLGDGVSSPSSIELAE 194 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 M G +V VE + GKIVEVLG + ++ +R + + +P + Sbjct: 195 KPAMEVLPGQLVSVEPITCGEEKKAPRGKIVEVLGYPDEPHVDMEAVIRKYGLSVEFPAS 254 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V +++ L + A R D D ++TID ARDFDDA+ GW L V IA Sbjct: 255 VLRELETLPQTPSPGELARREDWTDRTVITIDPASARDFDDAISITAT-PSGWTLAVHIA 313 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS++V+P LD EA RG S Y P +V+PMLP LS+ LCSL P V RL VCEM Sbjct: 314 DVSHFVKPGGSLDGEALRRGNSTYLPDRVLPMLPHRLSDDLCSLRPDVVRLTKVCEMKFD 373 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 KG++ +F +A + S ARLTY + + +L+G+ + + E NL +L + Sbjct: 374 KKGKMLRARFADAFIRSKARLTYQEAFAMLKGNDK-----GEVPSTVREAWNLASILRRN 428 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +G + + E + + + + R+ I + +++H+LIEECM+ AN + A ++ P Sbjct: 429 RYAKGALDLDFPEVRAVMDKDGRVTGIITEEYDESHQLIEECMLAANEAVALALKNGNRP 488 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY-AELLESVADRPDAEMLQTML 539 ++R+H++P + + F + G + + + R Y EL++S+ PD ++L+ L Sbjct: 489 TIYRVHEEPDSAKLFEFGQLCRLYGHPV---HDIDQRQYLNELMKSIKGSPDEQLLKLAL 545 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 L+S+ +A YD E GH+GLA +Y HFTSPIRRY DL +HR++ LLA T Sbjct: 546 LKSLMRARYDTEPLGHYGLATPNYCHFTSPIRRYADLVVHRSLNPLLANPPKGAKGAGST 605 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 G E + + + + AE+ A+ + +WL+ D V + +++ FG Sbjct: 606 GRLEEDAEHISETERISASAEKDANRMK--LFEWLEGQCYADH-PEVHEALVTETRHFGV 662 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 + + L I GLV L + ++ R + G G RV V V+ +++ Sbjct: 663 LLEIPRLQIKGLVKPDKLPGGRWVYEAFASRWKND-HGSVLCAGLRVPVIPVKVDREQQW 721 Query: 720 IDFSLISSERAPRNVGKTA-REKAKKGDAGK 749 DF+++S E+ PR GKTA K +KG +G+ Sbjct: 722 ADFAIVSREK-PRQTGKTAFPTKQEKGISGR 751 >UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n=18 Tax=Cyanobacteria RepID=B2IW45_NOSP7 Length = 784 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 213/752 (28%), Positives = 364/752 (48%), Gaps = 61/752 (8%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIG 91 +K +R L +L E E+ L+ L L +E+ G LV R + + E +++ + Sbjct: 15 DKLVARKVLEKKLGCEDEKSLQKLHIALDVLEKIGILVKERGKYRRVSEE-GIIEAKLRC 73 Query: 92 HRDGYGFL--RVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKT 149 G+ F VEG +D+Y+ + +GD+VL + L + R V++++ ++ Sbjct: 74 SSKGFCFAIQDVEG-AEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRSPEGEVKLILERS 132 Query: 150 SQIVGRYFTEAGVGF-VVPDDSRLSFDILIPPDQI-MGARMGFVVVVELTQRPTRRTKAV 207 + + + GF VP D RL F++ I P+++ + + +V VE+ + P + + Sbjct: 133 NHTLLARIKQVETGFRAVPLDDRLLFELKIQPNEVKLEEAIDHLVHVEVLRYPLAQYPPL 192 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267 G++V++LG + +D+ H++ +P V + A L +++ + R+DLR+L Sbjct: 193 GRVVQILGSDAEAAADIDLVTCKHDLSRTFPDHVLEAAAKLPKKLLKADLKNRLDLRNLF 252 Query: 268 LVTIDGE--DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 +TI+G D + ++A EK G W L V I DVS+YV+P LDREA RG SVY Sbjct: 253 TLTIEGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHYVQPDEALDREALKRGKSVYL 312 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFYEAVMSSHARLTYT 384 V+P+LP V++ CSL P DRL + +T+ + G + ++ +V++ LT Sbjct: 313 GELVLPILPPVVAER-CSLIPGSDRLTISFLITIDPQSGEVLEWEIQPSVINVETALTTE 371 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 + IL G+ + Q +V+ L++L L + + R RG + ++ + E + Sbjct: 372 QAQAILTGESQV--QSPQVVQILQDLQALQTGVKQVRLNRGSLQLNLPPSQNAYYDEGIL 429 Query: 445 ERIEQTQRND--AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 + ND L+ E ++L N A + PA++R+ P E + + Sbjct: 430 GAV---VVNDLPVRSLLTELVLLVNQLIATHLNALGVPAIWRVQGTPDVEDVQEMLKLAV 486 Query: 503 ELGLELPGGNKPE----PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 LG++L PE P DY L + A+ P ++L +L ++K + Y HFGL Sbjct: 487 NLGVDL--TLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDTLKPSAYSTTKGSHFGL 544 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG--------------HQGNTTETGGYHY 604 AL Y HF++P+RRYPDL + R LL E G ++ E ++ Sbjct: 545 ALPQYVHFSAPLRRYPDLLMQRVYYTLL--ENGRDRRNTRVRERVNLRHSSSHEEINWNV 602 Query: 605 SMEEMLQLGQ--------HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 E+ Q Q + E+ EA D+A K M ++G VF+GVI+ V Sbjct: 603 LPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITGVQS 662 Query: 657 FGFFVRLD--------------DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +GFFV ++ L ++GLVHVSSL +D+Y + Q L G + +YRL Sbjct: 663 YGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYRL 722 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 GDRV V+V++V+ ++ID + S+ P+ + Sbjct: 723 GDRVAVQVKSVDYYRQQIDLVTVGSDGVPKGL 754 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 164/499 (32%), Positives = 265/499 (53%), Gaps = 41/499 (8%) Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ A + +E+ E RVDL L VTIDG D +DFDDA+ C K G ++L++ IA Sbjct: 247 VLEKAATIPQEIIPEDYDNRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIA 306 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ +D+EA RGTS+Y P +VIPMLP LSNG+CSLNP V R C+ E+ + Sbjct: 307 DVSHYVKEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELD 366 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + G+ K Y +++ S RLTY +V ++ + L+ E+ K+L Sbjct: 367 NHGKNVSSKVYASLIKSDYRLTYNEVNDFFNQKIEVPNEINNLLSRAREIS---KILRAK 423 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 + + G + FE EE K I + I+ I + +A KLIE+ M+ AN + A +++ K P Sbjct: 424 KIKDGYVDFEIEEPKIIM-EDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMKELKIP 482 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGL---ELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 +++RIHDKP T +++ + +L +G+ ++P P+ + ++ + + L+ Sbjct: 483 SIYRIHDKPETLKLSALQELLGFVGMKNIQVPFDG--SPKSFEIMVNKIKAIKLDDYLKM 540 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI-KYLLAKEQGHQGNT 596 LLR+M++A Y N GHFGLA +Y+HFTSPIRRYPDL LHR I KY+L Sbjct: 541 ALLRTMQKAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYIL-------NGK 593 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + Y +E+ + Q S AE+ A R V D +K F + F + S+ Sbjct: 594 FDPKNYEKVKDEIEAIAQMNSEAEKTAMTVERSVVDVMKSKFFEKFINKTFVAQLVSIEK 653 Query: 657 FGFFVRLDD----LFI------DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 FG F +++ + I DGL+ +SS + + +T ++G Sbjct: 654 FGAFFNIEEYQASVLIRFEDDEDGLIKISSYE--------------AKGKSKTLKVGSEY 699 Query: 707 EVRVEAVNMDERKIDFSLI 725 ++ + +++ ++ I+ L+ Sbjct: 700 KIAITSIDHEKGNINAKLV 718 >UniRef50_UPI0001C32480 Exoribonuclease II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32480 Length = 601 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 201/596 (33%), Positives = 290/596 (48%), Gaps = 51/596 (8%) Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +V VL + +VG + + G +V D R S +G +V++ QR Sbjct: 38 VVAVLEKRGRHLVGEPYFQRGPRLIVDRDRRAS--------------LGDLVLLRAGQRG 83 Query: 201 TRRTKAVGKIVEV-LGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K V +I + ++ + +D LR P + A E + +VP G Sbjct: 84 KGHAKVVRRIGRPDVARDVIEALMLDRGLRRRFDPAVERAAREPRAV----DVP-----G 134 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLRDL TID A+DFDDA+ E+ WR+WV IADVS YVRP +DREA R Sbjct: 135 RRDLRDLTTFTIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAYVRPGDLIDREAYRR 194 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY P++V PMLPE LSN CSL P DRL + E+ + + FY + + S Sbjct: 195 GTSVYVPAKVEPMLPEGLSNVACSLRPGEDRLAVTAELELHGPS-VARASFYRSTIRSDE 253 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 RL Y +V I G + E +A + L L R+ +G ++ ES E +F F+ Sbjct: 254 RLDYDRVDRIFAGAEPALEPWA---QPLAAARGAAAALAARRDAQGALAIESVEPEFAFD 310 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 E + + ++H+LIE MILAN AR + + K P L+R+H++P A + Sbjct: 311 REGHVTAAAGVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERPDGSAAERLIA 370 Query: 500 VLAELGLELPG-GNKPEPRDYAELLESVA---------DRPDAEMLQTMLLRSMKQAIYD 549 LA LG+ P +P P+ AE + + R L +++LR++KQA YD Sbjct: 371 QLASLGVPTPPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLVLRALKQARYD 430 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRA-IKYLLAKEQGHQGNTTETGGYHYSMEE 608 P N GH GL L Y HFTSPIRRYPDL HRA + + A E Q + G S E Sbjct: 431 PRNLGHTGLGLTHYCHFTSPIRRYPDLVCHRALLSAVGAGEDAPQASRLPGAGDWASARE 490 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTGFGFFVRLDDL 666 + ER AD DVA + L + G F G ++ V G G FV D Sbjct: 491 -----RDAMQVERAAD----DVARCFLLERTLFETGFDQDFDGEVTGVIGAGAFVAFGDG 541 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + +G++ V L +++ ++ G L G +G+ R+GD V V+V+ V+ ++D Sbjct: 542 Y-EGMLPVRKLHGEWWELNEEGTILNGTRTGKAIRIGDAVRVQVDRVDAPRGRVDL 596 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 189/649 (29%), Positives = 315/649 (48%), Gaps = 45/649 (6%) Query: 86 KGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 +GTV G +GF ++ GR + +L+ ++M+ GD++L + + D KGR A++V+ Sbjct: 25 EGTVKGSPGRFGFAVLDDGR--ECFLNPDEMQKVFPGDRILVE-VSQDDKGRDVAKVVQH 81 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + + VGRYFT FV PD ++ I IPP + A + +V+ + Q P Sbjct: 82 MRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKRQQAHVNDLVLCRVLQHPFPEG 141 Query: 205 KAVGKIVEVLGDNMGTGMAVDIAL-----RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K ++V+++G +G+ V+ L + H I +++QVA E+ Sbjct: 142 KPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINEAELQKQVAAELEK-------- 193 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR+ P VTID +D DDA++ + GGW L AIAD S + +D+ A+ Sbjct: 194 RKDLRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIADPSTLIPEGGDIDKYAQRL 253 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G+S YF + +PMLP L+N CSL DRL +VC M + + G ++ Y EA + A Sbjct: 254 GSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAISSYSIEEAAIRCAA 313 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA----REERGGISFESEEAK 435 LTY +V L Y ++ L E+ +A E+R E +E Sbjct: 314 NLTYEEVATALASGDASAHAYDATLQALNEVKAALASHRRAHALVNEDRPDYQLELDENG 373 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + N R+I + AH ++EE M+ AN AA F+++ E +L+ H E + Sbjct: 374 KVKNIHRKINSV-------AHSIVEEAMVAANRCAADFLKQNTERSLYTSHSGFRPERLD 426 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + +++E + + + + ++ + P ++ + R + + + H Sbjct: 427 QIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALSDQPCPH 486 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FG+ L Y FTSPIR+Y DL++HR IK +L ++ H N + +LQL + Sbjct: 487 FGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLNA----------KAILQLQES 536 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 R A + WLKC++ +G F GV+ TG GF RLD+ I+G+V++ Sbjct: 537 L----RAGRSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLG 592 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +L + +RFD + GE + +RL V+V + AV+M+++ I L Sbjct: 593 AL-QEKFRFDGTYFQHTGEH--RQFRLEQPVKVTISAVDMEKKLIQMEL 638 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 206/662 (31%), Positives = 316/662 (47%), Gaps = 47/662 (7%) Query: 84 LVKGTVIGH-RDGYGFL---RVEGRKDDLYLSSEQMKTCIHGDQVL-AQPL----GADRK 134 LV GT+ H R G+GF+ + E D+++S+ +K + GD VL A P G RK Sbjct: 18 LVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVALPFSLRGGEKRK 77 Query: 135 GRREARIVR---VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 G + R VLV ++ V + P+ L ++L +G R+ Sbjct: 78 GVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHP-LKAELLPKRTYKLGDRLLLK 136 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V P+R + ++E +G+ + I +P AV Q+ + ++ Sbjct: 137 TPVWKENYPSREPPPLA-MLEFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQK 195 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 +A R DLRDL TID A+DFDDAV G + L V IADVS+YV P++ Sbjct: 196 HVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSA 255 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LDREA R S+YFP +VIPMLP LS+ LCSL P VDRL + MT S +G L+ Y+ Sbjct: 256 LDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRIL 315 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +V+ S R+TY +V I++ ++Q P+ K + ++ L ++ RE+RG Sbjct: 316 RSVIRSKYRMTYDEVDEIIE-----KKQTHPISKTILKMAELSRIFSDIREQRGCTRLVL 370 Query: 432 EEAKFIF-NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 N + + IE Q AHKLIEE M+ AN A + FR H+ P+ Sbjct: 371 PSFTMSLDNLQEPVALIENKQ-TAAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPN 429 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELL-ESVADRPDAEMLQTMLLRSMKQAIYD 549 E++ F+ +G + EP DY LL E+ A P +L + +RSMK A Y Sbjct: 430 EESLLVFQETAKAMGFTITQTPAQEP-DYQYLLQETTAGHPLEPILHSQFVRSMKTASYS 488 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 EN+GH+GL L Y HFTSPIRRY DL +HR + + L+ E+ H + Sbjct: 489 TENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEEEH----------------L 532 Query: 610 LQLGQHCSMAERRADEATRDVADWLKC----DFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 Q+ + CS ER A +A + K F+ +Q ++K I + + G L + Sbjct: 533 EQIVRACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPE 592 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +G + + L Y ++G + E R G + V++ +V + + I+++L+ Sbjct: 593 FCHEGFIPAAKLPQAYVLQTKIGLEELPEH----LRPGAVISVQLASVTLLTQSIEWTLV 648 Query: 726 SS 727 + Sbjct: 649 EA 650 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 180/541 (33%), Positives = 290/541 (53%), Gaps = 27/541 (4%) Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P + G V V++ R K +++ +G + V I + + I+ + Sbjct: 165 PSMTSSLKSGDFVKVKIVDYQKRILKI--SLIQKIGHESEHFLNVKIPIIDSGVSTIFNE 222 Query: 240 AVEQQVAGLKEEVPEEAKA---GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 V Q+ +++P+E K+ R+DLR+ ++TIDG+D +DFDDA+ E K + L Sbjct: 223 EVIQE----SKQIPQEIKSIDPDRIDLRNEVVITIDGDDTKDFDDAISIETKENN-YILK 277 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVSYYV + LD EA+ RGTS+Y P VIPMLPE LSNG+CSLNP VDR + E Sbjct: 278 VHIADVSYYVTEDSALDLEAKARGTSIYLPHIVIPMLPESLSNGICSLNPNVDRYTITME 337 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 + G+ K Y +V+ S+ RLTY +V D L L L+ L ++ Sbjct: 338 ALIDKNGQNLSVKIYPSVIRSYKRLTYHQVNEFF--DNKLSFGDPKLENLLKNALKLGQI 395 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L K +E +G + E +E+K I + + ERIE +R + +IE+ M+ AN + ++++ Sbjct: 396 LRKYKENQGYVDLEIDESKIILDEQGYTERIEIKERGLSENIIEDFMVRANENVSKYLAD 455 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 P L+R+H+KP ++ I ++ LGLE+ + + +A+ + + ++ + ++ Sbjct: 456 HNFPNLYRVHNKPDSQRILQLNQIIKNLGLEIQIPYNVDSKSFADFVNQIKNKQNDNFIK 515 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 +LR+M++AIY N GHFGLA + Y+HFTSPIRRYPDL LHR I++ + + NT Sbjct: 516 IAILRTMQKAIYSDVNEGHFGLASKFYSHFTSPIRRYPDLILHRIIRHFIFNK-----NT 570 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 T H++ ++ + E++A R + K +++ +G F I+S+ Sbjct: 571 DIT---HFNNILAIEASSTTEL-EQKAFVLERKIVGIKKAEYINKHIGKSFNAQINSILK 626 Query: 657 FGFFVRLDDLFIDGLVHVSSL---DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 FGFFV ++ +F D LV V SL D D Y + G + +S ++LG V V + V Sbjct: 627 FGFFVEIEGIF-DALVGVKSLPDNDEDVYNVSEDGFSI--SNSKFEFKLGQIVNVTITEV 683 Query: 714 N 714 + Sbjct: 684 D 684 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 272 bits (695), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 190/668 (28%), Positives = 326/668 (48%), Gaps = 38/668 (5%) Query: 95 GYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPK-TSQIV 153 Y F+R + D Y+ +E + H D V +P RKG +++ I+R +V + T Q V Sbjct: 95 SYAFIRTPEK--DYYVDAEDILNAFHNDIVAFEP--KYRKGHQDSAIIRKVVKRSTEQFV 150 Query: 154 GRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ--RPTRRTKAVGKIV 211 G G + + ++ F D G G VV+++T P VGK++ Sbjct: 151 GELIRRNGFSTFICSNPKV-FRWFFVSDPAQGEN-GDKVVLKVTNWGNPQMGKVPVGKVI 208 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 E+LG + + + +R + +P +P+ V + L E+ E R DLR+L TI Sbjct: 209 EILGKSGEPEVELLAVIRQYNLPLEFPEDVIAEANLLSAEIKPEDYRNRRDLRNLYSFTI 268 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 D A+DFDDA+ EK GWRL+V IADV++Y+ + +EA RG S YFP +VIP Sbjct: 269 DPITAKDFDDAIAVEKT-SKGWRLYVHIADVAHYLSVEGAIFQEASKRGNSFYFPKRVIP 327 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLPE LSN +CSL P+ ++LC+ + KG++ + YE+V+ S +RL Y +V + Sbjct: 328 MLPERLSNLICSLRPEEEKLCLTVQTDFDRKGQIIEQQIYESVICSQSRLNYDEVDELFA 387 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 G + + PL L E L ++L + R G I F+ E ++ ++ ++ + + Sbjct: 388 GKKT--DIPIPLQDILLEARALSRLLTEKRMNAGYIFFDLPEIEYEYDENGFLKCLTLAE 445 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 ++HK+IE M++AN A + + ++RIH+ P + +L+ G++ Sbjct: 446 ETESHKIIENFMLVANEFVATRLSQTAPATIYRIHNDPDFNKLERLIELLSYYGVKWVMY 505 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 + LL S + ++ +LLRSMK+A Y E+ HF LA+++Y HFTSPIR Sbjct: 506 ENLN-KSIQYLLNSFPNEAYHKVFDRILLRSMKKARYSTEHIHHFALAMENYTHFTSPIR 564 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 R DL +H K L T ++ ++ + S E +AD++ RD+ Sbjct: 565 RLCDLVVHYLCKTWLC----------HTSNQKFTPSQLKHFAEVASEQEIQADQSERDIE 614 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 M ++ G +++G++ SV G V+L+++ + G++ SL + + + R Sbjct: 615 MVYSLALMREKEGELYEGMVISVNSRGLIVQLEEIPVTGVIKEISLGEGNWEYLEREMRY 674 Query: 692 MGESSGQTYRLGDRVEVRVEAV---------------NMDERKIDFSLISSERAPRNVGK 736 + + + Y+L D + V + V N+ + K S S+ + P+ G+ Sbjct: 675 INRRTHKYYQLMDTLTVIIGYVEDDIYLFPIPETLRHNVSKTKSSLSHKSASQKPKPSGR 734 Query: 737 TAREKAKK 744 T +K+ Sbjct: 735 TGSPSSKR 742 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 180/650 (27%), Positives = 325/650 (50%), Gaps = 25/650 (3%) Query: 90 IGHRDGYGFLR-VEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVRVLVP 147 +G+++ GF+R ++ K Y+ + + GD V PL + G + +A +++++ Sbjct: 88 LGNKNT-GFVRPLDDDKTVYYIHFSNLAGALDGDLVEFCPLDKPQVGDKFDAAVLKIVKR 146 Query: 148 KTSQIVGRY---FTEAGVGF-VVPDDSRLSFDILI-----PPDQIMGARMGFVVVVELTQ 198 G + +++ G F +V D+ R ++ P + ++ F ++ + Sbjct: 147 SRVLYAGNFLIEYSDFGQEFRIVADNPRFYLTPIVNKASVPAELESNTKVAF----QIDE 202 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 I ++LG+N + + + H I + VEQQ A L+ + E++K Sbjct: 203 YDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFEDNDVVEQQAAKLQFDEKEQSKP 262 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DL +L VTID ++D DDA+Y K+ G+ L+VAIADV+YYV+ ++ LD EAR+ Sbjct: 263 YRKDLTELAFVTIDPATSKDLDDAIYV-KRTDKGFVLYVAIADVAYYVQRNSELDIEARH 321 Query: 319 RGTSVYFPSQ-VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 + +S+Y P V+PMLPE LSN LCSLNP R +VCE+ + RL + Y A + S Sbjct: 322 KTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFSEVYPATIVS 381 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R Y++V L+ L+++ A +++ L+ L +++ + R+++G I E + + Sbjct: 382 QRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQRKKKGTIDLSHSETEVV 441 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + I A +IE M++AN + A + K +R+H +PS + + Sbjct: 442 VDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTNHKVHLPYRVHPRPSKKKLQML 501 Query: 498 RSVLAELGLELPGG--NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + EL + P + A L+ D P ++ +LLR++ +A Y H Sbjct: 502 LENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDIFVILLLRTLGKAFYIVNPLIH 561 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 F + Y HFTSPIRRY DLT+HR + L + E E+ Q+ + Sbjct: 562 FSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTDTEREQLN-----AELEQICET 616 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 + E + + R D+L ++ QVG F G IS++T FG F+R+D+ DGL+ ++ Sbjct: 617 INDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGIFMRMDENNFDGLIKIT 676 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 S+ D++ F++ L G+ + + +R+GDR+ ++ ++ +++ +L+ Sbjct: 677 SIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKRAILTLV 726 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 199/649 (30%), Positives = 311/649 (47%), Gaps = 41/649 (6%) Query: 86 KGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQV-----LAQPLGADRKGRREA 139 +G V G + +GF+ + +GR +++L+ ++M GD V Q D+ + + Sbjct: 25 EGIVKGTQRKFGFVVLADGR--EIFLNPDEMTKVFPGDNVKILITTEQSKTKDKNAKPKV 82 Query: 140 RIV--RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 V +L + GRY + FV PD +L+ I IPP A G + +L+ Sbjct: 83 SGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNRWIFIPPAARKNAAAGDYIRCKLS 142 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + P K KI+EV+G+ G+ + ++ +W E+ +A + Sbjct: 143 RHPYPNEKPQAKILEVIGNLEKKGIETEYVTSKFQLDPVWKDNWEESLADID-------F 195 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 + R D++D+P VTID RD DDA+Y K GWRL VAIAD ++ ++ LD++ Sbjct: 196 SQRKDMQDIPFVTIDAASTRDMDDALYVSKS-DNGWRLLVAIADPGAFIISNSELDKQIA 254 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 R S Y P IPMLP L+N LCSL P R ++C++ +++ G + + EAVMSS Sbjct: 255 QRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALICQIDINATGDIVSHNIVEAVMSS 314 Query: 378 HARLTYTKVWHIL-QGDQDLREQYAPLVKH-LEELHNLYKVLDKAREERGGISFESEEAK 435 A+L+Y V L Q D + H L +L L L R+E + + + Sbjct: 315 KAKLSYDDVSRFLDQRDDTITSADCSNHGHVLTQLKELSDALLINRKENHLVIPNRPDLR 374 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + NA +++RIE +N A +++EECMILAN + ++ + A+F H E + Sbjct: 375 LVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQILD---DDAIFVSHPGFRPERVA 431 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 LAE L L + +P Y +++S+ D L+ +L R + +A + H Sbjct: 432 DV-CKLAEEQLSLTDIDVTQPDGYRHIMKSIDDDALDFPLRAVLSRLLSRARLSNKRLPH 490 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FG+ L SY FTSPIR+Y DL +HR IK L T +E + Q + Sbjct: 491 FGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLR-------GLPPTRCSDEQLEAIQQRQDN 543 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 A + ++ WLKC F+ VG F G +S + GF VR+D+ I+G V Sbjct: 544 SRQARSQMEQ-------WLKCQFIQPLVGQNFIGRVSQINSNGFTVRIDENLIEGFVETR 596 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 L D Y FD + RL +S T L +E+ V+ V+ D+R I F+L Sbjct: 597 ILP-DKYSFDPMRLRL--KSKTLTIELDQAIEIIVKEVDCDQRSIRFTL 642 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 201/657 (30%), Positives = 312/657 (47%), Gaps = 61/657 (9%) Query: 87 GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV 146 GT+ + G GF+++ + +++ + +++ I GD V QP +KGR E + ++L Sbjct: 126 GTISTSKKGDGFVKLPSGME-VFVPGQYVQSAIQGDLVEVQPNAIGKKGRLEGEVTKIL- 183 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ------------IMG----ARMGF 190 R + V+ D + F L+ D +M ++G Sbjct: 184 --------RRGRDLYRMIVIEKDPKFIFGKLLDIDGEEKEGYLLRKTILMNLQDEIQLGD 235 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA--LRTHEIPYIWPQAVEQQVAGL 248 V++V+L + V+ L T +D+ L + ++P+ + V L Sbjct: 236 VLIVKLREETEHERNLYE--VQFLRFESDTKEDLDLMRMLMKYNYSILYPENI---VLNL 290 Query: 249 KEEVPEEAK---AGRVDLRDLPLVTIDGEDARDFDDAV-YCEKKRGGGWRLWVAIADVSY 304 EEV E RVDLR+L +TIDGE ++DFDDA+ + E+K R +V +ADVSY Sbjct: 291 PEEVDESTVDDWGSRVDLRNLKCITIDGEYSKDFDDAISFVEEK--SRIRFYVHVADVSY 348 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVR T LD EA NR TSVY S+V+PMLP LS LCSL +RL EM KG+ Sbjct: 349 YVRLGTDLDEEAYNRATSVYLGSRVVPMLPPDLSENLCSLVAGKNRLAFTVEMEADWKGK 408 Query: 365 LTGYKFYEAVMSSHARLTYTKV-WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 +T K+Y++V++ R TY + IL GD + ++ K L R E Sbjct: 409 ITHVKYYKSVINVAERYTYNRAESEILSGDPG---------NWIFRMNEFAKALRARRIE 459 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 G + +E K + ++E + I R AH LIEE M+ ANI A + K K P L+ Sbjct: 460 DGRVDLNLKENKVVTDSEHNVVEISVQDRLQAHILIEEFMLSANIKIAESIRKKKHPTLY 519 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 RIH+ + E + S + L G+++ + A +L+ + +P + LLR+ Sbjct: 520 RIHEPMNEEKLESLNAFLQLNGIKILLKDSSYEAIRA-VLKELEGKPAERLFNMFLLRTF 578 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 QA Y E GH+GL + Y HFTSPIRRYPDL HR ++ +L ++ Sbjct: 579 MQAYYSGEYLGHWGLGFEDYCHFTSPIRRYPDLVCHRVLQQILLGKKP-----------L 627 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 Y EE++ LG HCS ER+A +A RD C ++ F I+ FV L Sbjct: 628 YGPEEVVTLGLHCSHQERKASDAERDYYKLKACRYLEKTGIKEFSATITGCKPHLIFVDL 687 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 ++ +D + S ++ + + + Y LGD++EV ++ V+ +E KI Sbjct: 688 ENPSVDACLISSEFTDEGEIRLETDFSFYSKKYSKIYTLGDKIEVELDRVDYEEIKI 744 >UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage Q54 RepID=Q0GXV6_9CAUD Length = 528 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 167/490 (34%), Positives = 260/490 (53%), Gaps = 21/490 (4%) Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++V + EV E GRVDL D + ID E +D DDAV EK G ++L VAIADV Sbjct: 25 EEVKNVASEVLTEEWDGRVDLTDKLIFAIDSETTKDVDDAVSVEKLPNGNFKLLVAIADV 84 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV + LDREA +RGTSVY V PMLP LSN +CSLN RL + EM + + Sbjct: 85 SHYVTEGSSLDREAYSRGTSVYVADFVSPMLPPALSNNICSLNDGKVRLALAAEMEIDLR 144 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + +EAV+ ++TYT+V + + + + K L ++ L+++L R Sbjct: 145 GNVKSTNLFEAVVKVK-QITYTQVNSVYKDNLHFYQDKG--YKMLWDMKELHEILLAKRR 201 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 +RG I F S E + + + + + +R LIE M+ AN S ++ V++ ++ Sbjct: 202 KRGAIEFASSELYVSTHDDGSAKGLSKRERGTGEMLIESFMLQANESVSKTVQELVNISI 261 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+HD+P I ++ +LG+ L + ++ + V P L LR Sbjct: 262 YRVHDEPIDSKIERLAAISEQLGVTLNIKSDNITGKELQTFMNQVKGTPQETALSNFALR 321 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 +M QA Y EN GHFG+A ++Y+HFTSPIRRYPDLTLHR IK +L G Sbjct: 322 AMCQAKYGYENIGHFGIAAEAYSHFTSPIRRYPDLTLHRLIKDILKVTNHRPG------- 374 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF----MLDQVGNVFKGVISSVTGF 657 Y + + + + S AER+A +A R++ L ++ MLD+ + G I ++ Sbjct: 375 --YWEKRIPLIAEQSSKAERKAVDAEREIEKKLIAEYVYKNMLDK---KYLGTIVNIKPN 429 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 V L + + G V++++++ND+ FD+ ++GES G T+ +GD++ + V + D Sbjct: 430 ALIVELAN-GVKGGVNIATIENDFMGFDEFTYSMVGESHGLTFNMGDKINIVVADADPDL 488 Query: 718 RKIDFSLISS 727 +IDF I S Sbjct: 489 GRIDFEYIPS 498 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 265 bits (678), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 254/475 (53%), Gaps = 22/475 (4%) Query: 237 WPQAVEQQVAGLKE-EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295 + ++++V ++ V EE K RVDLR +TID A+D DDA+Y EK+ + L Sbjct: 151 FLNEIKKEVVEIRRPNVSEELKY-RVDLRHQKTITIDDISAKDLDDAIYLEKEENH-YIL 208 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 +V+IADVSY+V+ + LD EA RG S+Y QVIPMLP+ LSN LCSLNP D+L Sbjct: 209 YVSIADVSYFVKEYSKLDFEAAKRGNSIYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTV 268 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYK 415 ++ G+L F+++++ SH RL YT V + + + Y L LE L K Sbjct: 269 KLKYDLNGKLIESDFFKSIIKSHHRLNYTDVNKMFDNND---KSYPILWDMLE----LSK 321 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 +L K + ++G I+F E K I + I+ I + + +LIE M+ AN + A ++ Sbjct: 322 LLRKQKNKKGMINFNIPEIKLILDENGDIKEISKRISGLSQELIENFMVAANEAVAEYLH 381 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 PA++R+H+ P + + S L LG + P A++++ ++ ++ ++ Sbjct: 382 WQNIPAIYRVHEAPEIDTLRSLNKKLNILGYNINNVMDIHPGKIAKIIDKSSNDENSYLI 441 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 +L++MK+A Y EN+GHFGLAL +Y HFTSPIRRY DL +HR +++ L ++ Sbjct: 442 HKTVLQAMKRAKYMNENKGHFGLALDNYLHFTSPIRRYSDLIVHRMLQFTLNNKK----- 496 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 T EE + +H S ER A+ +D D+M + VF+ IS + Sbjct: 497 -ISTKYIDKKKEEYKLIAEHISKTERVAERLEKDSIKLKLLDYMKKHLNEVFEARISGII 555 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV 710 F++LD+L V ++ + Y + L+ ++ G + +GD+V++++ Sbjct: 556 RGKIFLQLDNLI--ETVFYDNISSKYI----IDDALLIDNKGNKFNIGDKVKIKI 604 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 184/659 (27%), Positives = 317/659 (48%), Gaps = 31/659 (4%) Query: 83 DLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 D+ +GT+ +GF+ ++ GR + +L EQ+ + D+ A+ + + KG+ EA++ Sbjct: 22 DIAQGTIRTTTKRFGFILLDDGR--EAFLDPEQILRVLPEDRAEAE-ITTNAKGQYEAKL 78 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 ++L + VGRY ++ FV PD + + +PP G G +V ++ + P Sbjct: 79 TKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQDRKGLTEGDLVHCQVARHPF 138 Query: 202 R-RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 KA I++ LG+ G+ A+ ++P WP A + Q + + P + Sbjct: 139 HCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPAAQNQASSIHWS-PLVFENNE 197 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 DL LP VTID E RD DDAV C + GW L+ AIAD + ++ +PL++ AR R Sbjct: 198 EDLTQLPFVTIDSESTRDMDDAV-CIQATEHGWELFSAIADPTKHIDFDSPLEQAARERA 256 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 ++ Y + MLP LS SL + R +VC + + + G + + F EAV+ S + Sbjct: 257 STHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIRNDGHIESFAFSEAVIRSRQK 316 Query: 381 LTYTKVWHILQ--GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 L+Y V+ L + +L ++ L L L + + R++ + E + +FI Sbjct: 317 LSYQGVYDFLTTAAETNLSDE---LRTQLTMLRDFALARSQYRQQHNLLMEEKPDYQFIL 373 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 N +++IER+E+ R AH+++EE M+ N+ A + +F H E + Sbjct: 374 NEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGYGIFSGHIGFRPERVNDAV 433 Query: 499 SVLAELGLELPGGNKPEPRDYA----ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 +++ E +L G+ + +D+ EL ++ P L ++L R ++ E Sbjct: 434 ALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALHSLLQRQLQAGALSQEPVP 493 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGL +YA TSPIRRY D H IK LL E +++ +++ + Sbjct: 494 HFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEPP------------LALDNLVEFVE 541 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 +A R WL C +M +G+V G I+ V G VRLDD ++G + + Sbjct: 542 RLQHKLNLGRQACRFTETWLACQYMNQHIGSVHTGNIALVNSTGIGVRLDDWGMEGFIPL 601 Query: 675 SSLDNDY-YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 D+D +FD +RL +G TY+L + V+V ++ V++ +R++ SL+ A R Sbjct: 602 VPRDSDIKAQFD--SRRLSLNVNGNTYKLDEVVQVVIDEVDVSKRRVALSLVDEATAAR 658 >UniRef50_D1NGV9 Ribonuclease R (Fragment) n=1 Tax=Haemophilus influenzae HK1212 RepID=D1NGV9_HAEIN Length = 275 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 115/147 (78%), Positives = 130/147 (88%), Gaps = 1/147 (0%) Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 EEVPEEAK GRVDLR+LPLVTIDGEDARDFDDAVYCEK G GW+LWVAIADVSYYVR Sbjct: 130 FTEEVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEK-HGKGWKLWVAIADVSYYVR 188 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 + LD EA NRG SVYFP++V+PMLPE+LSNGLCSLNPQ+DRLCMVCEM +S+KG+LT Sbjct: 189 LRSALDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQMDRLCMVCEMQISAKGKLTD 248 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQ 394 Y+FYEAVM+SHARLTYTKV +L GD+ Sbjct: 249 YRFYEAVMNSHARLTYTKVAKMLXGDE 275 >UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria RepID=B9L5L4_NAUPA Length = 652 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 179/577 (31%), Positives = 295/577 (51%), Gaps = 45/577 (7%) Query: 87 GTVIGHRDGYGFLRVEGRKDDLYL-SSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 G V + G+GFL G K+ YL +E + GD V+A+ L ++KGR +A++V +L Sbjct: 49 GKVDVTKKGFGFLTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKL-FNKKGRPKAKVVYIL 107 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT- 204 K + Y T F ++ ++ I D + +L + + Sbjct: 108 -EKAFSVSVVYLT-----FEYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAVFKVD 161 Query: 205 KAVGKIVEVLG--DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 KI++VLG D+ + +AL + + E + G + V +E RVD Sbjct: 162 NYTNKIIDVLGVLDDPWVDEKISLALYNKKEEFSKKAIAEAEAYG--DYVEKEFYPNRVD 219 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 L DL TID A+D DDA+Y +K++ L+VAIADVS YV + +D+EA+ RG S Sbjct: 220 LTDLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNIDKEAKERGFS 276 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 +YFP + IPMLP LS +CSL Q DRL V ++ +++K + + +EA++ S + + Sbjct: 277 IYFPHKSIPMLPRQLSENICSLKEQEDRLAFVFKIKLNNKNEVVKEELFEAIIKSKRKYS 336 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER--GGISFESEEAKFIFNA 440 Y +V L G + ++ + LE L L++ + K R +R G+ F S+E K N Sbjct: 337 YDRVDEFLDGRFENTDETDNEI--LEWLMPLWEKVKKIRTKRLKTGLDFSSDEIKMTLNE 394 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + IE+IE + +HKLIE+CM+LAN +AA+ + + +FR+H+KPS+ +I Sbjct: 395 QGLIEKIELEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPSSNSIDELYES 450 Query: 501 LAELGLELPGGNKPEPRDYAELLESVADRPDAEML------QTMLLRSMKQAIYDPENRG 554 L LG+ + E +D+ +++ + + A+M+ +++RS +QA YD +N G Sbjct: 451 LTALGINID----VEEKDFVKVVRDI--QKQAKMMGIEKEVDKLIIRSQQQARYDAKNIG 504 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 H+ L + Y HFTSPIRRY DLTLHR +K ++ ++ + + + L Sbjct: 505 HYALGFEKYTHFTSPIRRYSDLTLHRLLKSIIRNDKKQM---------EFILRNIEALVV 555 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 S ER A + D D + + + ++KG+I Sbjct: 556 KISELEREAMKVEWDFYDRKYARYAKEHLNEIYKGII 592 >UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepID=Q7MQZ6_WOLSU Length = 653 Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 191/579 (32%), Positives = 282/579 (48%), Gaps = 67/579 (11%) Query: 87 GTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 G + R+G GFL G DL + +K GD VLA+ + + + GR A++V VL Sbjct: 50 GVLDISREGVGFLESFGSSGKDLLIQKSDLKGAFKGDVVLARRVYSHKGGRPSAKVVEVL 109 Query: 146 VPKTSQIVGRYFTEAG--------VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 K + +V AG G +P ++ +PP V+ L Sbjct: 110 EKKNAILVAYLDQHAGRIEALDIKNGLSLPLNASAKSLKALPPQ----------TVIRLD 159 Query: 198 QRPTRRTKAVGKIVEVLG--DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 R G+I+EVLG + + +AL P+ P+ E+Q +V Sbjct: 160 VRE-------GRIIEVLGVLSDPRVDEKISLALFNKSEPF--PRECEEQAESFGRKVEAS 210 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 R D R LP TID DA+D DDAVY + K L+VAIADVS YV P +P+D+E Sbjct: 211 MYPARQDFRSLPFCTIDPIDAKDHDDAVYFDAKESI---LYVAIADVSEYVTPHSPIDKE 267 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKFYEAV 374 AR RG ++Y P + IPMLP LS +CSL PQ DRL V ++ + + L + +EA+ Sbjct: 268 ARVRGFTIYLPHKSIPMLPRNLSENICSLKPQEDRLAYVWKIRLHKRTALPLKAELHEAI 327 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYA--PLVKHLEE-LHNLYKVLDKAREER--GGISF 429 + S +L+Y +V D+ L E A ++K L+E L NLY K R +R G F Sbjct: 328 IRSKQKLSYEEV------DEFLEEPKANSTILKELQEPLLNLYARTKKLRAKRLERGYEF 381 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 +EE + + + + I + +H LIEECM+LANI +A+ +EK +FR+H++P Sbjct: 382 FNEENRLLMDENLNLISIVSEKETPSHSLIEECMLLANIYSAKHLEK----GIFRVHEEP 437 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT----MLLRSMKQ 545 E I L LGLE KP+ +A + ++ +A+ ++T M++RS Q Sbjct: 438 KLEKIEELLWDLRSLGLE----AKPKETLHAT-IATIQKEAEAKGIRTEVDRMIIRSQAQ 492 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A Y + GHFGL + Y+HFTSPIRRY DL LHR +K L E+ + Sbjct: 493 ARYSHQKIGHFGLGFEEYSHFTSPIRRYSDLVLHRLLKAELKGEKRKM---------EFY 543 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG 644 ++ + L S ER + D D L+++G Sbjct: 544 LDALAPLCDSLSALERESARVEMDYKDRKYARLALERLG 582 >UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam n=2 Tax=Synechococcus RepID=Q2JH83_SYNJB Length = 766 Score = 248 bits (633), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 218/771 (28%), Positives = 365/771 (47%), Gaps = 70/771 (9%) Query: 17 PIPSREF--ILEHLTKR--EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 PIP +F I +H + ++ +D L L E E L L + R G F Sbjct: 2 PIPKMDFSRIFQHFLSQPPDQLTDKDTLLALLQSPDPEAPEMLEIALDGLVRAG---FLE 58 Query: 73 RQCYALPERL------DLVKGTVIGHRDGYGF-LRVEGRKDDLYLSSEQMKTCIHGDQVL 125 R P R LV G + G+ F +R E +D+Y+ + +GDQVL Sbjct: 59 R--LGDPPRYRRKPDESLVVGRLRCSSKGFCFAIRDEPGVEDVYIHGSNLSGAWNGDQVL 116 Query: 126 AQPL-GADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGF-VVPDDSRLSFDILIPPDQI 183 A+ +R+ E +V V+ S +VGR + GF VVP D RL F++ + Sbjct: 117 ARVTKDGNRRRSPEGEVVAVVERANSALVGR-LKQTEQGFRVVPLDDRLLFELALTEGSP 175 Query: 184 MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 + G V VE+ + P G I ++LGD + D+ +++P +P V + Sbjct: 176 VELAEGRVAYVEVNRYPLGDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQEFPAPVLE 235 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR-----DFDDAVYCEKKRGGGWRLWVA 298 A L +++ + GR DLRD +T++ D + + + AV +++ W L + Sbjct: 236 AAAALPKKLSRSDQKGRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWLLGIH 295 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADV++++ P PL++EA+ R +VY + V+P+ P + N L +L PQ +RL +T Sbjct: 296 IADVAHWLDPDHPLEQEAQQRTATVYLDTMVLPLFPPEVHNRL-ALLPQQERLAYSLLVT 354 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL--REQYAPLVKHLEELHNLYKV 416 + +G + ++ Y +++ S A L+Y +V +L DL E+ L+ L+ L L ++ Sbjct: 355 LDPEGVVQNFEIYPSLVQSRAHLSYGQVQALLATTADLGPDEEVPELMALLQNLLRLSQI 414 Query: 417 LDKAREERGGISFESEEAKFIFNA-ERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L R + GG + +A E + + R AH L+ E ++LAN + Sbjct: 415 LRAKRHQAGGFDLPLLDLLTPHSADESGYGPLLISDRLGAHALMTEILLLANQILGHHLR 474 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-----DYAELLESVADRP 530 + P+L R+ P+ EA+ SF + + L+L N +P D+ + + P Sbjct: 475 QLGIPSLARVQPAPAAEALQSFLRLANAMKLDL---NLQDPAVVTLADWQRICARIT-AP 530 Query: 531 D-----------AEMLQTMLLRSMKQAIYDPENRGHFGLAL-QSYAHFTSPIRRYPDLTL 578 D A+ML T+ + + E GHFGL L + YA FT+P+RRY DL Sbjct: 531 DVLASGASPALVAQMLATLPPVEYRLQPLE-EQLGHFGLGLKEPYATFTAPLRRYADLLN 589 Query: 579 HRAIKYLLAKEQGHQGNTTET-------GGYHY--------SMEEMLQLGQHCSMAE--- 620 RA+ L+K + + + ++T GY ++E Q + + Sbjct: 590 LRALHLALSKGRERRSSRSKTVVDLHGPSGYGQIDWQVLPPKVQEEWQAFLQAQLPKIQE 649 Query: 621 --RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 R +A R++ + +FM +G VF G+I V +GFFV++D + +GLV VS+L Sbjct: 650 GYRIRQQAERELMGLKRSEFMQKHLGEVFPGLIIGVQNYGFFVQVDPILAEGLVRVSTLK 709 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 ND+Y + Q L+G S + +RLGDRVEV+++ V+ ++ID ++I R Sbjct: 710 NDWYEYRSRQQALVGRKSRRQFRLGDRVEVQIKNVDYYRQQIDLAVIGEGR 760 >UniRef50_Q7VIS0 Putative uncharacterized protein n=1 Tax=Helicobacter hepaticus RepID=Q7VIS0_HELHP Length = 614 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 206/396 (52%), Gaps = 31/396 (7%) Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267 G IVEVLG + I L ++ + V++ +EV +E RVDL LP Sbjct: 130 GNIVEVLGVLGDAQIDEKIVLSSYNRVNEFSSNVKEFAQSFGDEVCKEMYPHRVDLSHLP 189 Query: 268 LVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS 327 ID +DARD DDA+Y E K L+VAIADVS YV + LD+EAR RG S+YFP Sbjct: 190 FCVIDPKDARDHDDAIYFESKTKT---LYVAIADVSEYVSCESVLDKEARQRGFSIYFPH 246 Query: 328 QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW 387 +V+PMLP LS+G+CSL RL MV ++T+ ++ + EA + SHA ++Y + Sbjct: 247 KVVPMLPFELSSGICSLKENKVRLAMVWKITLDKNAQVQKSELLEAFIQSHANVSYENIE 306 Query: 388 HILQGD--------QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 LQG Q + Y P +K +A + G F+S E K + Sbjct: 307 SFLQGHKSTLPKEIQKWLKAYLPYIKK-----------HRAMRLQYGYEFQSNEIKLELD 355 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + I + + AH +IEE M+LAN+ +A + + +FRIH P E I S Sbjct: 356 EYQNISSWHKVEHTLAHSIIEESMLLANVQSALMLINNTQKGIFRIHPPPKEERIQSLLW 415 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPD----AEMLQTMLLRSMKQAIYDPENRGH 555 + +G ELP D+ L+ ++ ++ AE+L M+++S +A Y N GH Sbjct: 416 EIKNMGFELPS-----TLDFHSLILAIQNQVKGSNMAEVLDDMIIKSFAKATYSVINIGH 470 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 FGL +SY HFTSPIRRY DL +HR +K LL K++ Sbjct: 471 FGLGFESYTHFTSPIRRYSDLIVHRILKALLHKDKS 506 >UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQ37_FIBSS Length = 812 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 161/525 (30%), Positives = 268/525 (51%), Gaps = 38/525 (7%) Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 +P + A+E+ VA + + ++ K GRVD R L ++ ID E A D DDA+ E+K GG Sbjct: 188 LPKGFSPAIEKYVASITDPTEKDFK-GRVDYRKLDILCIDPEGAMDHDDAISVERKPNGG 246 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 ++L V IADVSYYV + LD EA R + Y P +PMLPE LS+G+CSL+ VDR Sbjct: 247 YKLGVHIADVSYYVPEGSDLDEEALERSYTQYLPWTAVPMLPEKLSSGVCSLHEGVDRCA 306 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN 412 C + + + + G+ F+ +V++ +TY + +++ D +K L E+ Sbjct: 307 FTCMIDLDKEANVLGWDFHRSVVNITKGITYQQAVKMMEEGDD-------SIKALAEVTA 359 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 L K + R + G + F++ E FN +I + +D++ +EECM++AN A+ Sbjct: 360 LLK---RNRTKDGLLEFQTTEYGCKFNENGEPVKIFPREHDDSNSWVEECMLIANNCCAK 416 Query: 473 FVEKAKEPALFRIHDKPSTEAITS--------FRS---VLAELGLELPGGNKPEPRDYAE 521 +++ K ++RIH+ P T+ I F+ +L +LG G P + + Sbjct: 417 ELKQRKLQGIYRIHEAPDTKDIMELYYMYPDLFKDAPVMLRDLGKPRSGDTNLNPVAF-K 475 Query: 522 LLESVADRPDA-EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 L E + R E L +LRSM++A YD + GHF L Q Y+HFTSPIRRY DL HR Sbjct: 476 LYEHLVKRAAGDETLTNRILRSMQKAHYDSNSFGHFALNWQDYSHFTSPIRRYADLWCHR 535 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 E +G + + ++++ S E + + R C + Sbjct: 536 --------ELARKGKEIDA----ERVNSVIEVCDLISANEIKNMKVERISIKVCSCWILK 583 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD-NDYYRFDQVGQRLMGESSGQT 699 ++G+ F+ ++ + +G +V +DD +GLV + +D+Y F+ G+ SG+T Sbjct: 584 SRIGDSFEASVTGIEEWGIYVSIDDPIAEGLVRYRDITGDDFYVFNPDQGLAFGKRSGRT 643 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKK 744 +R GD+V V++ V+ + DFS I+ + +P + RE ++ Sbjct: 644 FRRGDKVMVQLLRVDPLRGQADFS-ITEKLSPEPKKRRTREDTER 687 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 194/649 (29%), Positives = 299/649 (46%), Gaps = 39/649 (6%) Query: 85 VKGTVIGHRDGYGFLRVE----GRKDDLYLSSEQMKTCIHGDQVLAQ-PLGADRKGRREA 139 V G + H G+GFL V+ G ++ ++ + + D V A GAD GR A Sbjct: 10 VTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATVSQGAD--GRWTA 67 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 + +L Q+ G G F+ D S D P + + G VV + + Sbjct: 68 SGLSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDW--PLETGTAVQTGDAVVARIVE- 124 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 GK V + G +V + H++ +P V ++ ++ VP A Sbjct: 125 --------GKAVLLHRLEPGVDRSVARIIARHDLRRDFPPEVLEEARAVRG-VPH-ALGA 174 Query: 260 RVDLRDLPLVTIDGEDARDFDDAV-YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLR LP VT+D RD DDA+ G RL V+IADV+ +V + LDR AR Sbjct: 175 RRDLRALPTVTVDAPSTRDIDDAISVLPAGEDGALRLLVSIADVAEFVTEGSALDRAARE 234 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVY V+PMLPE LS+ SL P +R C+ E+ + ++G +T E+++ S Sbjct: 235 RGTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHVTAADVSESLIRSW 294 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 ARL Y +V L + P+ + + L AR RGG+ EEA+F F Sbjct: 295 ARLNYDEVAAYLDRGA-VSAAMEPVREAMPWFRAASARLAVARAGRGGMELAREEARFTF 353 Query: 439 NA-ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 +A ++ IE T AH+LIE M+ AN + A ++E PA+FR+ D+P + + Sbjct: 354 DAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEPDRQRVADL 413 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + G E G + P A + L+++L RS+ A Y GHFG Sbjct: 414 SAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPALRSVLRRSLGFARYTVVPSGHFG 473 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLL--AKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 LA + Y HFTSPIRRY DL +HR +K L ++ HQ E QL Sbjct: 474 LAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDPAVE------------QLAVR 521 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 + + + A +D L+ M VG + I+ V FG ++LD + ++G+V + Sbjct: 522 LNARAKASSRAEQDRHRVLEARLMASHVGKSYPARITRVKPFGLLIQLDGMLVEGVVPMD 581 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 SL +R D L+G+ +++ +G + +V + + +I+F+L Sbjct: 582 SLPGGPFRPDARETSLVGKE--RSFTVGMPLMAKVVSTDEVLGRIEFAL 628 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 189/655 (28%), Positives = 314/655 (47%), Gaps = 29/655 (4%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 A+ E + GTV +GF+R+ +GR D +L E+M+ + GD+V D+K Sbjct: 16 AIHESKEYATGTVASTNGRFGFVRLTDGR--DAFLDPEKMQFVLPGDEVKILVTTNDKK- 72 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 + EA I +++ + VG Y + F VPDD +++ I IPP G + G + + Sbjct: 73 QLEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPPKSRKGCKEGEKIAAK 132 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + Q P + KA K++E +G + + +++ + ++Q+ ++ + E Sbjct: 133 IIQHPAQDGKAQAKVIERIGQPDDHHIEYKYTVAKYDLSPWNKEGEDEQLKKIRASIEAE 192 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 R D LP VTID RD DDAV+ ++ G L VAIAD + ++ P +PL + Sbjct: 193 EFGEREDYTQLPFVTIDSPTTRDMDDAVHIAEQDGKTV-LTVAIADPASFIAPGSPLAKL 251 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A + S Y +IPMLPE L+N SL R +VC +T+++ G + YKF AV+ Sbjct: 252 AERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLANDGAVEDYKFERAVI 311 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S +L Y +V L+G ++ A ++ +L L + + R E I + + Sbjct: 312 QSKYKLNYQQVAEFLEG-TNIEGLPADAADNISKLSELATLRYQYRTEHNLIGQDQLDYD 370 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + + +I I R AHKL+EE M+L N A F+ + K L +H + I Sbjct: 371 IRLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNK-LGLHTVHGGFRLDRIG 429 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 ++L E + P G+ E +L+++++ L L R M+ A E H Sbjct: 430 EVNALLKEEQI-TPEGDITELEGNLQLIKALSANERQRNLIPALRRMMQSAELSDEAGPH 488 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME-EMLQLGQ 614 G+ + YA TSPIRRY DL H AI +L TG Y+ + L+ + Sbjct: 489 MGMGFKHYATSTSPIRRYADLYNHWAIHSVL------------TGSKPYTFKPHQLERLK 536 Query: 615 HCSMAERRADEATRDVADWLKCDFM-LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 A R+AD R++ WL C ++ +G +G + VT GF VRL + +DG + Sbjct: 537 ETLQAGRQAD---REIYQWLLCQYVEASLIGFEGRGKVRIVTQQGFGVRLIENGVDGFIA 593 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 + +FD +R+ +G TYR V+V+V +V+ ++R+I ++L+S + Sbjct: 594 FPK--SQEKQFD--AKRMTLTVNGVTYRADCEVDVKVVSVDQEKRRIAYALVSPD 644 >UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35_SORC5 Length = 648 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 159/478 (33%), Positives = 232/478 (48%), Gaps = 21/478 (4%) Query: 259 GRVDLRDLPLVTIDGEDARDFDDAV-YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLRD+ VTID D DDAV G R+ V+IADV +V +PLD EAR Sbjct: 187 GRRDLRDVITVTIDAPVTTDIDDAVSVLPAGPDGALRVLVSIADVDAFVPEGSPLDLEAR 246 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP+ +S+ SL P VDRL + E+ + +G +T +E+V+ S Sbjct: 247 ARGTSVYLAGRVIPMLPDAISSEAASLLPGVDRLAVTVELRIDPEGGITSIDLHESVIRS 306 Query: 378 HARLTYTKVWHILQGDQD--LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 HARL+Y V L + + E P+V+ L L R RGG+ + EEA Sbjct: 307 HARLSYDAVEEFLTTGRSAGIPEAARPVVRW---LRTAAARLSTVRAARGGVELDREEAY 363 Query: 436 FIFNAERRIERIEQTQRND--AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 +AE R E + R+D AH+LIE M+ AN + A ++ P +FR+HD+P+ E Sbjct: 364 VTLDAETR-EPTAVSPRSDTGAHRLIERLMVAANEAVASWLVARGLPCVFRVHDEPTEER 422 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + G+E G + P A A ++T++ +++ A Y Sbjct: 423 VRALEQFAHNFGVEAGFGARLSPLGLAAFEAQYRGSELAPAIRTVVGKALGPARYTGAGG 482 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 HFGL Y HFTSPIRRY DL +HR +K L QG + E E + L Sbjct: 483 LHFGLGAPLYLHFTSPIRRYADLAVHRVVKRYL---QGRRDQRVEA-------EALASLA 532 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H + R A +A + L +VG +G I S+ FG V++ + G + Sbjct: 533 HHLNARARSAAKAETERHRMLVARLFASRVGEEIEGYIVSIKPFGLVVQMVESGATGTIA 592 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 + +L YR D Q L+G S + Y +G+ + + A N + ++D + AP Sbjct: 593 LEALPGGPYRIDAAAQALVGAS--RRYGVGEPIRAAIAATNEELGRVDLVPAGARGAP 648 >UniRef50_A6Q7D2 Ribonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7D2_SULNB Length = 655 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 183/571 (32%), Positives = 282/571 (49%), Gaps = 49/571 (8%) Query: 93 RDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV-PKTS 150 +DG G++ + + + DL + + + +GD V+ + + A R+GR ++V V+ Sbjct: 56 KDGRGYVESQFKEQKDLLVEPDHLGDAKNGDTVVVKRIIA-RRGRASGKVVMVITKAHLF 114 Query: 151 QIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 I + EAG V+ + ++ + ++G V+ V+ K+ Sbjct: 115 TIAYTHRDEAGNFMVLNIKTGEPTHAVMEGMDLKAFKLGTVMKVDADD---------DKV 165 Query: 211 VEVLG--DNMGTGMAVDIAL--RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 ++V G D+ + +AL R E P PQ VE+ + ++ EV +E R+DL L Sbjct: 166 LQVFGHLDDPRVDEKISLALYNRHDEFP---PQCVEEALQ-IESEVTKEEHTDRIDLTHL 221 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 TID A+DFDDAVY + + + L+VAIADVS+YV T +D+EA+ RG + Y P Sbjct: 222 DFCTIDPVTAKDFDDAVYFDLE---TYTLYVAIADVSHYVPYFTEIDKEAKKRGFTTYLP 278 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG-RLTGYKFYEAVMSSHARLTYTK 385 + PMLP LS +CSL P+VDRL V ++T+ + +F+EA++ S R Y Sbjct: 279 HKSFPMLPRELSENICSLKPKVDRLAFVAKITLDQNSLKPLKEEFFEAIIHSRHRFNYEP 338 Query: 386 VWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER--GGISFESEEAKFIFNAERR 443 V I+ D + +E + + L L LY++ + R+ER G F SEE K N E+ Sbjct: 339 VDRII--DTNGKEATGKVKEILHYLLPLYRITQRLRKERLKHGFDFRSEEIKLTLNEEQL 396 Query: 444 IERIEQTQRNDAHKLIEECMILAN-ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 + + +H LIEECM+LAN SA RF K ++FRIH+ P + I + + LA Sbjct: 397 LVSTQIETGTPSHSLIEECMLLANQASAKRF--KGDGDSIFRIHELPQLQKIEALLTELA 454 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPD----AEMLQTMLLRSMKQAIYDPENRGHFGL 558 +GL + E D L+ ++ + + M+++S++QA Y N GHFGL Sbjct: 455 AIGLYV-----EEYEDSPSLIRAIQKEAGKMGLSAEVDAMIIKSLRQASYSSHNVGHFGL 509 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 Y+HFTSPIRRY DL LHR IK L N E Y + + L S Sbjct: 510 GFSHYSHFTSPIRRYADLILHRLIKTQLT-------NNEEEA--EYLLRNIEPLCVRVSD 560 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKG 649 ER A +A D D + Q+G F+ Sbjct: 561 LEREATKAEWDFRDRKFARWAKTQIGAFFEA 591 >UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_9GAMM Length = 688 Score = 232 bits (592), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 188/639 (29%), Positives = 289/639 (45%), Gaps = 37/639 (5%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG------- 135 + + TV G ++ YGF V G ++++ ++M + GDQV A +KG Sbjct: 45 EYAEATVKGTQNRYGFAVV-GDGREIFIPPDEMLKVLPGDQVRICIRPATQKGKGGKKSQ 103 Query: 136 --RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 R A I R++ + VG + FV PD L + IPP GA+ G V Sbjct: 104 DGRTVADIERLIESTLDRFVGTIVVKGKAVFVEPDLHDLKRWLFIPPHARNGAKPGDKVD 163 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 L + P + K K++ V G G+ + + W EE Sbjct: 164 CALMRHPFKDGKPSAKVLSVFGSPGTPGLENRYCAARAGLTWAWSDKESATWIKFAEERE 223 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + RVDL L V+ID +D DDA+Y E GW L+VA+AD + Y+ LD Sbjct: 224 PLSDPERVDLSHLNFVSIDAARTQDIDDALYAEVT-SEGWVLYVAVADPTAYLDGMEGLD 282 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 + TS YF V+PMLPE + C+L+ R +VC++ VS G++ Y+F +A Sbjct: 283 ETLTSIATSTYFHGDVLPMLPEAIGRDFCALSEGEARPSLVCKINVSDAGQVGSYEFIQA 342 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 + S A+LTY V + G D Q LE L Y+ L RE + + E Sbjct: 343 KIQSKAKLTYAAVDRYVTGHND---QLIAWSNPLEALVQAYRALRSHRESHELVMEDRTE 399 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 ++ N ER+I IE ++ + L+EECMI AN SAA F+ ++ F +H + Sbjct: 400 YRWQLNDERQIGTIETAEKLASQHLVEECMIAANRSAAHFLAMSEATGPFVVHPGFRKDR 459 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + L +L Y ++ ++ + P L+ M+ R + +A++ Sbjct: 460 ASETQEFLKRYLPDLTDTTTHTVAGYQQIFAAL-NAPHTLPLRGMVNRLLTRAVFSTSPA 518 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H G+AL +Y +FTSP+R+Y D HR IK +L+K+ G LQL Sbjct: 519 EHMGMALNAYTNFTSPLRKYVDFLTHRQIKRVLSKKPGDAVTD-------------LQL- 564 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLDDLFID 669 Q + A R AT+ WL ++ LD+ + + G I+ VT GF VRL L ++ Sbjct: 565 QSTASAIARGRGATQAAERWLTGNY-LDRCKSSGETRYTGEIAHVTSAGFTVRLAGLGLE 623 Query: 670 GLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 G V + D + + FD+ L SS + +LG VEV Sbjct: 624 GQVDLRK-DPEKFSFDKWTASLT--SSTRKLQLGQTVEV 659 >UniRef50_Q30T59 RNAse R n=2 Tax=Campylobacterales RepID=Q30T59_SULDN Length = 649 Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 200/626 (31%), Positives = 289/626 (46%), Gaps = 70/626 (11%) Query: 87 GTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 GT+ ++G +L V G DL++ + GD V+AQ L R G A+IV VL Sbjct: 51 GTLGLVQNGTAYLHVIGEYVRDLFIDDVESSKAKEGDLVIAQRLLGKR-GSPSAKIVEVL 109 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK 205 GR T V +++ D++ S ++ + F + VE+TQ K Sbjct: 110 --------GRAQT-YSVAYIITKDAKKS---------LVDLKTDFPIGVEITQDELESYK 151 Query: 206 A--VGKI-------VEVLGDNMGTGMAVDIALRTHEIPY--IWPQAVEQQVAGLKEEVPE 254 V KI +E+LG N+ + + + H + P+ +E +A EV Sbjct: 152 DGDVFKINNQDFTIMELLG-NIKDPLVDEKIVLAHYNKHDAFEPEVLE--IASSFTEVDA 208 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 RVDLR LP TID A+DFDDA+Y ++K L+VAIADVSYYV P +D Sbjct: 209 SKHPLRVDLRKLPFCTIDPVTAKDFDDAIYYDEKEST---LYVAIADVSYYVEPFGAIDN 265 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG-RLTGYKFYEA 373 EA R S+Y P + IPMLP LS LCSL P VDRL V EM + + ++ K YEA Sbjct: 266 EAIYRSFSIYLPHRSIPMLPRELSETLCSLQPHVDRLAYVFEMKLDLETLEVSSSKVYEA 325 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD--KAREERGGISFES 431 ++ S R Y +V + +G +L Q ++ E +H L + D KA+ + G +F S Sbjct: 326 IIHSQRRFNYEEVDELFEG--NLEPQNPSEIEIFEYIHKLRVITDALKAKRLKIGYNFRS 383 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPS 490 E + + I + +H LIE+CM+LAN AA RF +FRIH+ P+ Sbjct: 384 NELEMFLDKNSNISSTSYAEETPSHALIEDCMLLANKEAAKRFTR-----GIFRIHEPPN 438 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + + LA +G+ K E+ + A+ + T++++S QA Y P Sbjct: 439 QMKLQNLYQELAGIGM-FINIKKSIKETITEIQKQAAEMNLVSEVDTLIIQSQMQARYAP 497 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 N GHFGL Y HFTSPIRRY DL +HR +K + +TTE Y + + Sbjct: 498 INAGHFGLGFDEYTHFTSPIRRYSDLIVHRLLKAI------SNHDTTEGS---YVLRNIE 548 Query: 611 QLGQHCSMAERRADE-----ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 L S ER A R A W + + +F ++S F F L D Sbjct: 549 SLCMSVSEKEREASTIEVEFMARKFARWAA-----ENIDELFSARVTSTDPF-FKAELHD 602 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRL 691 I G + + D FD V R+ Sbjct: 603 T-ISGARFYITHNLDAALFDDVKVRI 627 >UniRef50_UPI00019779BC hypothetical protein HcinC1_09125 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779BC Length = 692 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 145/412 (35%), Positives = 212/412 (51%), Gaps = 51/412 (12%) Query: 206 AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRD 265 A G IVEV G + IAL T+ Y + + + EV + R DL Sbjct: 169 ASGNIVEVFGVLEDANIDEKIALSTYNRAYDFSPSSNEFALSFGNEVDKAMYPNRADLSH 228 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 LP ID DA+D DDA+Y + K L+VAIADVS YV ++ LDREA+ RG S+YF Sbjct: 229 LPFCVIDPIDAKDHDDAIYFDVK---SRTLYVAIADVSEYVSFNSELDREAKKRGFSLYF 285 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 P +V+PMLP LS+G+CSL RL MV E+++++K + + +EA++ SHA ++Y + Sbjct: 286 PHKVLPMLPFALSSGICSLKQNELRLAMVWEISLNTKAEVKKSRLFEALIQSHANVSYEE 345 Query: 386 VWHILQGDQDLREQ-----------YAPLVKHLEELHNLYKVLDKAREER--GGISFESE 432 + LQ Q Y P VK K R+ R G F++E Sbjct: 346 IESFLQNKSVKSTQLPDSVTQWLKAYVPFVK-------------KCRKNRLNVGFDFKNE 392 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E K FN I ++ ++ AH +IEE M+LAN+ +A+ + + +FRIH P E Sbjct: 393 EIKLKFNKSMEISSWQKNTQSLAHSIIEESMLLANVESAKML----DSGIFRIHPPPQLE 448 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESV---ADRPD-AEMLQT---------ML 539 I R L +G E+ P +D L+ + AD D A++ Q ++ Sbjct: 449 RIDELRWDLESMGYEV-----PRTQDIHTLITQIQAQADENDNAKISQNDNQRAIVDGLM 503 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 ++S+ +A Y + HFGL +SY HFTSPIRRY DL +HR +K +L K++ Sbjct: 504 IKSLSKATYSSKPLAHFGLGFESYTHFTSPIRRYSDLIVHRILKAILHKDKN 555 >UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria RepID=B9KCI4_CAMLR Length = 646 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 170/594 (28%), Positives = 287/594 (48%), Gaps = 58/594 (9%) Query: 94 DGYGFLRV--EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL--VPKT 149 +G GFL K DL + ++ +K + D V+A+ L +K R A+++ +L +T Sbjct: 57 NGTGFLESFDPAFKRDLLIENKNLKGANYADIVVAKLLPL-KKKRPSAKVILILKRAHET 115 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 S ++ + + EA +G V + L+ + + +G ++ +E T+ +G Sbjct: 116 SLVITKKYGEAVLG--VNIQTGLTCALKASQKSLKTLPLGTILKIE--NHDNNITEVIGH 171 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 I + D I+L + I+ E + ++V R DLR+L Sbjct: 172 IDDDFVDE-------KISLALYNKNSIFDTLCENEAKAYGDKVDVSMYPSRKDLRNLNFC 224 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 TID DA+DFDDA++ +K ++VAIADVS YV + +D+EAR+RG S+YFP Sbjct: 225 TIDPIDAKDFDDAIFYDKNEHV---IYVAIADVSAYVHAYSAIDKEARSRGFSIYFPHIA 281 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 IPMLP LS +CSL P DRL ++++ + + +EA+++S R Y +V Sbjct: 282 IPMLPRALSENICSLKPNEDRLAFCFKISLDQNNEVIKEELFEAIINSKRRFNYDEVDEY 341 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER--GGISFESEEAKFIFNAERRIERI 447 LQ +DL + L+ ++K+ R++R F+++E + + ++ + Sbjct: 342 LQTQEDLGA--------INWLYEVFKITQNLRKKRLKNACEFKTQELRMTLDENNKLIKT 393 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 +H LIE+CM+LAN +AA+ + + +FR H P + I + L+ L ++ Sbjct: 394 RLENDTASHNLIEDCMLLANKAAAKLI----DIGVFRNHLSPDYKKIDQLLADLSTLSID 449 Query: 508 L-PGGNKPEP-RDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAH 565 + P N E +D L + R E + +++++ K+A Y EN GHFGL Y H Sbjct: 450 INPKNNVIELFKDIQVLANELNIR---EEVDKLIIKAQKKAEYSSENAGHFGLGFDKYTH 506 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRY DL LHR LL + H + ++Y + + + S+ ER AD+ Sbjct: 507 FTSPIRRYSDLILHR----LLKAKINH-----DEKMFNYLLLNIQSTCEELSLLEREADK 557 Query: 626 AT-----RDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 + R A W K + +G FK ++ V+LDD L+++ Sbjct: 558 VSWNFMDRKFARWAK-----ENIGKRFKAIVIENQS-SLQVKLDDDIKGALINI 605 >UniRef50_B6FY97 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY97_9CLOT Length = 462 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 138/404 (34%), Positives = 217/404 (53%), Gaps = 14/404 (3%) Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + + + ++ L +E E RVDLRDL TIDG++++D DDA+ K G + L Sbjct: 55 FDERITKEACRLSDERIEYEINKRVDLRDLKTFTIDGKNSKDLDDAISINKNFNGNYILG 114 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+YVR + +D+ AR R TSVY +VIPMLP +SNG+CSLN ++L + Sbjct: 115 VHIADVSHYVREYSCIDKMARRRATSVYLNDRVIPMLPPEISNGICSLNQGEEKLTLSVF 174 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYK 415 + + G + E+V++SH R Y V I++ D+ L EQY ++ EE L + Sbjct: 175 IEIDKHGITVNHWICESVIASHLRTNYDDVSDIIENKDKKLIEQYKDFIQDFEEADKLAQ 234 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 +L R +RG +SF++ E + I + R + +R A+ +IEE MI+AN + A+ Sbjct: 235 ILRDRRIKRGALSFDTPEKRVILDENRIPIDLITEERRAANIIIEEFMIVANETVAKHFV 294 Query: 476 KAKEPALFRIHDKP--STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAE 533 + P ++RI + P + + S +LGL ++ P D ++ SV + E Sbjct: 295 NEEIPFIYRILENPHRNKNKVPSTFVTTYDLGLREIELDEITPLDIQRMINSVPNEGVEE 354 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 +L+ ++ ++ +QA Y H+ LA Y HFTSPIRRYPDL +HR IK L Sbjct: 355 LLKCIVRKANRQARYSSSCTEHYTLATDCYCHFTSPIRRYPDLQIHRIIKDYL------N 408 Query: 594 GNTTETGGYHYS--MEEMLQLGQHCSMAERRADEATRDVADWLK 635 G TE HY +EE+ ++ ++ R AD A R+ ++ + Sbjct: 409 GRMTEARRQHYGSFIEEVAEIS---TLKSRTADRAEREAENYYR 449 >UniRef50_A8ERD9 Ribonuclease R n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ERD9_ARCB4 Length = 617 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 213/385 (55%), Gaps = 43/385 (11%) Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 K RVDLR+LP TID A+D DDA+Y +K L+VAIADVSY+V+ + LD+ A Sbjct: 196 KNQRVDLRELPFCTIDPNSAKDHDDAIYFDKDENI---LYVAIADVSYFVKEGSDLDKLA 252 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVM 375 + TS+Y PS+V+PMLP +LS +CSL +DR V ++ + K + + +EAV+ Sbjct: 253 FKKSTSIYLPSKVLPMLPPILSEEMCSLKEGLDRYSFVFKLHLDLEKLSVKKAELFEAVI 312 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHL-EELHNLYKVLDKAREER--GGISFESE 432 +SH +Y ++ +++G DL Y+ L K + + L LY++ K R++R G F + Sbjct: 313 NSHKNFSYGRIDRVIEGHLDL---YSKLDKEIFDYLIPLYEITKKFRKKRLEKGYDFRTT 369 Query: 433 EAKF-IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E + + N+E +E IE +H+LIEECM+LANI A++ K A+FR+H++PS Sbjct: 370 ENRLKLRNSE--LESIEVETSTASHQLIEECMLLANIEASK---KVSNIAIFRVHEEPSF 424 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT----MLLRSMKQAI 547 +AI+ + + G N +D E + + ML ++++S QA Sbjct: 425 KAISKLVD-----DVNILGVNVKLQKDVHETITHIQKSAKTSMLSAEVDELIIQSQTQAK 479 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y +N GHFGL SY+HFTSPIRRY DL LHR +K T +T + Sbjct: 480 YSSKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRILK------------TKQTP------K 521 Query: 608 EMLQLGQHCSMAERRADEATRDVAD 632 + ++ +H S+ ER+ D+ D D Sbjct: 522 NIDEICEHISLNERKVDQLVWDFED 546 >UniRef50_Q46363 Acetazolamide conferring resistance protein zam n=8 Tax=Chroococcales RepID=ZAM_SYNY3 Length = 782 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 191/722 (26%), Positives = 344/722 (47%), Gaps = 36/722 (4%) Query: 43 ELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGF-LRV 101 +L E E +E L+ L A+E+ G LV R + Y R D+V+ + G+ F ++ Sbjct: 26 KLGCESPEAIEALQIALDALEKMGVLVKERGK-YNRVTREDVVEARLRCSSKGFCFAIQD 84 Query: 102 EGRKDDLYLSSEQMKTCIHGDQVLAQPL-GADRKGRREARIVRVLVPKTSQIVGRYFTEA 160 + D+Y+ + +GD+VL + + R+ E ++ +L ++ + Sbjct: 85 DEDATDIYVREGNLSNAWNGDRVLVKVIKDGTRRKSPEEQVHLILDRANPSLLAQVKKSE 144 Query: 161 GVGFVVPDDSRLSFDI-LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMG 219 VP D RL F++ L +Q +G + +V V + + P + +G++ +VLG + Sbjct: 145 DNYRAVPLDDRLLFELELQDKEQNLGEAVDHLVHVSVLRYPIAQHPPLGEVTKVLGSDAE 204 Query: 220 TGMAVDIALRTHEIPYIW-PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI-DGE--D 275 DI H++P W P+A+E + K P E K L LVT DG + Sbjct: 205 AAADTDIVSCKHDLPLGWTPEAIEALQSLPKVIEPGELKKRTWITAKLQLVTFGDGPRGE 264 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 + + + + W++ + I D+++Y+ + LD+ AR RGT+VY Q+ P+ PE Sbjct: 265 TLPWQEVALSLESQANQWQVGIHITDIAHYIAEDSLLDQLARKRGTTVYLEEQICPLFPE 324 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD 395 L G CSL P DRL + +TV +G +TG++++ +V+ +L +++V L + Sbjct: 325 GLI-GRCSLIPDEDRLALSFFLTVDDRGEVTGFEYHSSVVKVDHQLDFSEVQTALADIES 383 Query: 396 LREQYAPLVKHLEEL-HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 + + P L+EL + ++ R +RG + ++E A + E R+ I + Sbjct: 384 VSGELKPYGGLLQELFFQICPLIKSQRLQRGSFNLQTETASPRLD-EGRLGVIMTQETLP 442 Query: 455 AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA--ELGLELPGGN 512 L+ E M++ A ++ P L+ P E +T + +LG+++ Sbjct: 443 IRSLLAELMVVLQREVALQLQALGIPGLYCGQVAPEGEDLTDIVKLAGNLDLGVKIDLEG 502 Query: 513 KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS-YAHFTSPIR 571 P+ Y L + P +L +L ++K Y HF LA S Y H SP + Sbjct: 503 DIIPQHYHHLSQGFESLPAKAVLNHLLANTLKIEKYFSHPAPHFALAYDSGYTHCVSPAQ 562 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETG-------------------GYHYSME-EMLQ 611 RY DL + R +K +L + + + +TG ++E ++ Q Sbjct: 563 RYGDLVIQRLLKLVLTEGRDRRTKQMKTGVELNAHTCRNQISWNVLPPNLQETIEGDLHQ 622 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 L + E+ A++A +D+ K + M + G +F+G+I+ V +GFFV++ DL +GL Sbjct: 623 LVLGLNDREQTAEDAEKDLLGLKKAEKMKARAGEIFRGLITGVQSYGFFVQIFDLLAEGL 682 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 VHVSSL +D+Y F L+G S +YRLG+ V+V+V +V+ ++ID +++ AP Sbjct: 683 VHVSSLKDDWYEFRSRQCALVGRKSRTSYRLGNEVDVQVRSVDYYRQQIDLGAVNN--AP 740 Query: 732 RN 733 ++ Sbjct: 741 KD 742 >UniRef50_C0QWY3 Exoribonuclease R n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QWY3_BRAHW Length = 580 Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 150/490 (30%), Positives = 256/490 (52%), Gaps = 27/490 (5%) Query: 243 QQVAGLKEEVPEEA-----KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 +++ + EE+ +A +A RVDLR+L +TID E ++D DDA EK ++++V Sbjct: 110 EELLKIAEEINNKADFTNIEADRVDLRNLKTITIDSESSKDLDDAFSIEK-TDNNYKVYV 168 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 I+DVS+++ +PLD EAR RG S Y +V M PEVLSN + SLN DR + Sbjct: 169 HISDVSHFIELDSPLDLEARARGNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFIT 228 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL---QGDQDLREQYAPLVKHLEELHNLY 414 +++ G + ++V+ S +L+Y ++ + D+D L++ ++ N+ Sbjct: 229 DINNDGEILSSSVCKSVIRSDRKLSYDYAEKLIKKEESDEDW------LLELIDNALNIK 282 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV 474 VL K R+E G+ FE+++ K + N E ++ ++ +IEE M+LAN A + Sbjct: 283 NVLYKKRKEGRGVEFENQDIKIVLNDEGMPIEFYAEEKKESMAIIEELMLLANSKVAEKL 342 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 + + +FR H P +F+ + G EL N + D + +V + + + Sbjct: 343 S-SYDGVIFRYHGLPDEYRFNNFKILAHTKGYELK-ENPDKTYDIKGFIGNVKGKQEENL 400 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 L +LLRSM + Y N+ HFGL L Y +FTSPIRRY DL +HR +K + + Sbjct: 401 LIPVLLRSMTPSSYSIVNKSHFGLGLDYYTYFTSPIRRYADLLIHRIVKDTIL-SNNNSI 459 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 N S+E + S+ ++ + +A + + +M D++G+ + G +SS+ Sbjct: 460 NEKLKNICKDSIESL-------SLLDKTSKKAEKYLIQIKAARYMKDRLGDEYYGAVSSI 512 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 T G +V ++ L I+G + + + ++ YRF Q Q + + + Y LGDRV+V V + N Sbjct: 513 TPKGIYVEIEGLEIEGFIEATYVGSN-YRFYQDMQSVYVDKV-KAYELGDRVKVLVASSN 570 Query: 715 MDERKIDFSL 724 ++ KI FSL Sbjct: 571 VENGKIFFSL 580 >UniRef50_A1VYZ1 RNB-like protein n=15 Tax=Campylobacter RepID=A1VYZ1_CAMJJ Length = 644 Score = 222 bits (565), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 175/591 (29%), Positives = 285/591 (48%), Gaps = 72/591 (12%) Query: 95 GYGFLRV--EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL--VPKTS 150 G GFL+ E K DL + ++ +K + D ++A L +K R A+++ VL +TS Sbjct: 58 GTGFLQCFDESFKKDLLIENKNLKGANYKD-IVAVKLLPLKKKRPSAKVILVLKRANETS 116 Query: 151 QIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 ++ + + EA +G M + G ++ +Q+ + + +G I Sbjct: 117 LVITKRYGEAVLG--------------------MNIKTGLSTALKASQK-SLKALPLGTI 155 Query: 211 VE----------VLG--DNMGTGMAVDIAL--RTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 ++ VLG D+ + +AL + +E + A ++ + V Sbjct: 156 LKIENENNNIIEVLGHIDDESVDEKISLALFNKNNE----FSDACIKEALANGDSVDASM 211 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R+DLR LP TID A+DFDDA+Y + ++ ++VAIADVS YV + +D+EA Sbjct: 212 YENRMDLRALPFCTIDPIHAKDFDDAIYFDIQKR---EIYVAIADVSEYVYAYSAIDKEA 268 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RNRG S+YFP IPMLP LS +CSL P +DRL ++ + + ++ + +E +++ Sbjct: 269 RNRGFSIYFPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIIN 328 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S R Y +V IL DL+E + L EL + K L K R + F +EE + Sbjct: 329 SKRRFNYDEVDEILIQKPDLKE-----LSWLYELFEITKNLRKMR-LKNAFEFRTEELRM 382 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + ++ + +H LIE+CM+LAN +AA+ + + +FR H I Sbjct: 383 NLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI----DIGVFRNHLSADARKIDK 438 Query: 497 FRSVLAELGLELPGG-NKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 + L ELG+++ N PE RD L + + R + + L ++++ K+A Y N G Sbjct: 439 LLNELRELGIDVNFKPNLPELIRDIQALSDELNLRAEVDKL---IIKAQKKAEYSSINAG 495 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGL Y+HFTSPIRRY DL LHR +K AK++ + ++Y + + + Sbjct: 496 HFGLGFDKYSHFTSPIRRYSDLILHRLLK---AKQKNDE------KLFNYLLLNIESTCE 546 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 S ER AD+ D D + +G FK ++ G +LDD Sbjct: 547 SLSTLEREADKVAFDFMDRKFARWAAKNIGKKFKALVVQNDGVC-IAKLDD 596 >UniRef50_C1QCY4 Exoribonuclease R n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QCY4_9SPIR Length = 581 Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 244/469 (52%), Gaps = 21/469 (4%) Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 GR+DLR+L +TID E ++D DDA+ EK+ +++++ I+DVS+++ ++PLD EAR+ Sbjct: 131 GRIDLRNLKTITIDSESSKDLDDALSIEKEDDDHYKVYIHISDVSHFIELNSPLDIEARS 190 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RG S Y +V M PE+LSN + SLN DR M + +++KG + + +++V++S Sbjct: 191 RGNSTYLIDEVYNMFPEILSNNVISLNENADRFAMTLLVHINNKGEVLSSEVFKSVINSD 250 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 +L+Y I+ + L+ + + NL L R+E G+ F+++ + + Sbjct: 251 KKLSYDYAEDIIDKKCQAEDWLIVLIDNALIIKNL---LYNRRKEGRGVEFDNQNVQIVL 307 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + ++ + ++EE M+LAN A+ + K + ++R H P +F+ Sbjct: 308 DDDGIPIEFYAEEKKQSMSIVEELMLLANSEIAKKLSKY-DGVIYRYHGVPDEYRFNNFK 366 Query: 499 SVLAELGL---ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + G ELP + D E ++ V + + +L +LLRSM + Y N+ H Sbjct: 367 ILAHNKGYDLKELP----DKSYDIKEFVDRVKGKQEENLLIPVLLRSMTPSSYSIVNKSH 422 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGL L Y +FTSPIRRY DL +HR + K+ GN ++ + Sbjct: 423 FGLGLDYYTYFTSPIRRYADLLIHR-----IVKDTILSGNEVIEESLKNVCKDSIDSLSL 477 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 ++A+ TR + +M D++G+ + GVISS++ G +V ++ L I+G + Sbjct: 478 LDKTSKKAERYTRQIK---AARYMKDRLGDEYYGVISSISPKGIYVEIEGLDIEGFIESI 534 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + ++ YRF Q Q + + + Y LGDRV+V N++ KI FSL Sbjct: 535 YIGSN-YRFYQDMQSVYIDKI-KAYELGDRVKVLAAKSNVENGKIFFSL 581 >UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9HELI Length = 716 Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 190/707 (26%), Positives = 336/707 (47%), Gaps = 51/707 (7%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPL- 129 ++ Y L E+ + G V + GYGF+R + D + +K GD VLA+ L Sbjct: 38 KKNKYYLLEKFRI--GKVELTKAGYGFVRAFDNTGKDWLVEKNLLKGAQKGDIVLAKSLI 95 Query: 130 GADRKGRREARIVRVLVPKTSQIVGRY--FTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 + +A+++ VL K S ++ + + +P++ I Q Sbjct: 96 KHQHSAKIKAKVLAVLQEKVSSVICYLEKYKLDCIAVSIPNEVVYK----INASQKSLKT 151 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 + ++++ R G+I+E+LG + I+L ++ + E Q Sbjct: 152 LPSKTILKINPRN-------GEILEILGTLEDPKIDEIISLNLYDKHESFSLQAEIQAQS 204 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 KE ++ K R++L +LP ID A+D DDAV+ +++ L+VAIADVS+YV Sbjct: 205 FKEVKIKDFKE-RINLTNLPFCAIDPVSAKDHDDAVFYDEESSI---LYVAIADVSHYVT 260 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR-LT 366 P++PLD EA++RG S+YFP + IPMLP +LS LCSL RL MV ++ + + + + Sbjct: 261 PNSPLDIEAKSRGFSIYFPHKSIPMLPRILSENLCSLQEGKTRLAMVWKIRLHKRTKAVL 320 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 + + AV+ +LTY +V IL Q + PL L L L + L K R ++ G Sbjct: 321 SSELFAAVIKVRQKLTYDEV-DILFETQKSKTIKKPLHSMLFALQELTQKLRKKRLQK-G 378 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP------ 480 F +E + + ++ + ++ +H+LIEECM+LANI +A+ +E+ Sbjct: 379 FDFLGDEVELELDKNLELKSLHFQPQSSSHQLIEECMLLANIQSAKLLEQKNSKNDENLK 438 Query: 481 -ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRD--YAELLESVADRPDAEM--- 534 ++R+H KP E ++ L LG+ G P+ ++ + ++E + A+M Sbjct: 439 LGIYRVHQKPKQEKLSELFGELRMLGI-WRGKAIPKTQESLHKAIIEIQNNAKKAKMQRE 497 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + ++++SM+QA Y N GHFGL ++Y+HFTSPIRRY DL LHR +K Sbjct: 498 VDKLIIKSMQQANYASHNLGHFGLGFEAYSHFTSPIRRYSDLILHRILK----------S 547 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 T Y E + L + + ER + D D ++ +G ++G+I + Sbjct: 548 KITLQEDIDYK-ESLPMLCDNLNTQEREIMQIEWDFQDRKFARYLSKHLGQTYQGIIIN- 605 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 + L D + G V L+ ++ + +++ + T G V+V E + Sbjct: 606 ESHPILISLTDYPLMG-ARVVGLNGSGVKYQKALVQIIEVNLATTKVYGMVVKVYNEGFD 664 Query: 715 MDERKIDFSLISSERAPRNVGKT-AREKAKKGDAGKKGGKRRQVGKK 760 I +++ ++ + K A+E+A++ + K K+++ K+ Sbjct: 665 SKNEAISQYIVAKKQNQAKIKKQRAKEEARRIASRAKRHKKQKFHKR 711 >UniRef50_C5BR14 Exoribonuclease II n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR14_TERTT Length = 655 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 195/656 (29%), Positives = 304/656 (46%), Gaps = 45/656 (6%) Query: 87 GTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 G V G +GF+R+E GR D +LS E+M+ I GD+V L + K + EA + +L Sbjct: 26 GHVAGTNGRFGFVRLEDGR--DAFLSPEKMQRVIPGDKVKVS-LTKNDKDQLEATLESLL 82 Query: 146 VPKTSQIVGRYFTEAGVGFVVP-------DDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 S+ +G+Y FVVP S ++ I +PP + G +VV L Q Sbjct: 83 EQSLSRFLGQYRVTKKGHFVVPLGNAPGLKSSPINRWIFLPPKSRGRCKDGDMVVARLQQ 142 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV-PEEAK 257 P KA +I+E +G + +++ + + ++Q + E+ Sbjct: 143 HPYDDGKASARILENIGQENDPHIERLYVSAKYDLQPRYSEPAQKQTKDIARSFKSEQFG 202 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYC---EKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 A R D ++P VTID E RD DDAV E ++L VAIAD + ++ +PL + Sbjct: 203 AERTDFTEVPFVTIDAETTRDMDDAVALTVNEDSDQARYQLHVAIADPASFIDQHSPLAQ 262 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 + S+Y IPMLPE L+N SL R + C M +++ G +T +F A Sbjct: 263 SSHRSAQSLYLLGGTIPMLPEELANHCFSLAEGTVRPVLSCRMDINTDGEITHAEFARAT 322 Query: 375 MSSHARLTYTKVWHILQG------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 + S +L Y +V L G D D + Q A ++K L EL +L + + RE +S Sbjct: 323 IRSRRKLDYQRVGAFLDGTADTYTDNDPQPQIATMLKQLAELADLRR---RYRETHQIVS 379 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 + E F N + +I + +R AHK++EE M+ N SA +F+ KA + LF H Sbjct: 380 SDQAEYAFEVNQQGKICAVHLRERTQAHKIVEEAMLATNYSAGQFLAKAGK-GLFTTHTG 438 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 + + +++L E +E + + L+ +++ + L L R M + Sbjct: 439 FREDRLGEVKALLKEEQIE--HDDIMSLDGFVTLVNKLSNDQEKATLLPALRRMMPTSEL 496 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 + +GH G+ + YA TSPIRR+ DL H AI L + N Y + E Sbjct: 497 SLDAKGHLGIGMPHYATITSPIRRFTDLFNHWAILSELEGAKFRNANEE----YLTKLSE 552 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 L G R AD R++ WL C + VG I VT GF RL+ I Sbjct: 553 NLNNG-------RLAD---RELQQWLICQYAESLVGETDSAKIRIVTQQGFGARLETQGI 602 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 DG + FD +R+ + GQ Y+L D V+V+V++V+MD+R+I FS+ Sbjct: 603 DGFILFDK--KTEKSFD--AKRMTLDVGGQVYKLEDVVKVKVDSVDMDKRRIAFSV 654 >UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria RepID=A6DBI2_9PROT Length = 650 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 154/513 (30%), Positives = 259/513 (50%), Gaps = 30/513 (5%) Query: 87 GTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 G V + G+GFL G K+ D + S + GD V+A+ + +KGR +A++V +L Sbjct: 49 GKVDITKKGFGFLIPIGVKERDYIIESHHLNGASKGDLVIAEIIKR-KKGRPKAKVVYIL 107 Query: 146 VPK--TSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 S + +Y + G V + + + + + ++ V ++ Sbjct: 108 EKSFVYSVVYLKYEFKNGRKVPVLRNVKTDQPVYVNEKKKTLKKLPDGAVFKVNNYTV-- 165 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 KI EVLG + I+L + + + ++ + V + RVDL Sbjct: 166 -----KIEEVLGVLQDPWVDEKISLGLYNKKEEFSKKAIKEAKAFGDYVDKLMYPDRVDL 220 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 +L TID A+D DDA+Y +K++ L+VAIADVS YV + +D+EA+ RG S+ Sbjct: 221 TNLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNIDKEAKERGFSI 277 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 YFP + IPMLP LS +CSL DRL V +++ + + +EA++ SH + +Y Sbjct: 278 YFPHKAIPMLPRELSENICSLKENEDRLAFVFKISFDDNNEVIKEELFEAIIHSHRKYSY 337 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER--GGISFESEEAKFIFNAE 441 +V L+G + ++ + L L L++ + R ER G+ FES+E + + Sbjct: 338 DRVDEFLEGKFENIDEIDKEI--LSWLMPLWEKVKHIRTERLKTGLEFESDEIRMSLDEN 395 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 I+ ++ + +HKLIE+CM+LAN +AA+ + + +FR+H+KPS ++ S L Sbjct: 396 GMIKEVKIEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPSQTSLDELYSEL 451 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPD----AEMLQTMLLRSMKQAIYDPENRGHFG 557 LG+++ K D+ +++E + + + + +++RS +QA YD HF Sbjct: 452 GALGIDVDVDEK----DFVKVVEKIQAQAKELGIKKFVDKLIIRSQQQARYDAACTPHFA 507 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 L Y HFTSPIRRY DLTLHR +K + +Q Sbjct: 508 LGFDRYTHFTSPIRRYSDLTLHRLLKATIKNQQ 540 >UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Zam n=2 Tax=Synechococcus elongatus RepID=Q5MZZ6_SYNP6 Length = 748 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 190/698 (27%), Positives = 321/698 (45%), Gaps = 43/698 (6%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKT 117 L A+ER G L+ R Y E + V+ + G+ F + +D+Y+ Q+ Sbjct: 45 LDALERLG-LLTKDRGKYRRNEENEWVEARLRCSSKGFCFAIQDAEDAEDIYIREHQLNH 103 Query: 118 CIHGDQVLAQPLGADRKGRR----EARIVRVLVPKTSQIVGRYFTEA-GVGF-VVPDDSR 171 +GD+VL L R+G R E + +L S ++ R +A G GF VP D R Sbjct: 104 AWNGDRVLVNVL---REGSRRRSPEGEVKLILERANSSVLARITEKAEGEGFRAVPLDDR 160 Query: 172 LSFDILIPPDQI-MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 L ++ + + + + A + V + + P + VGK+ ++LG + + VD+ Sbjct: 161 LLCELDLESNGLDLAANRDHLASVAVQRYPLAQLPPVGKVTQILGSDPESASPVDLIRCK 220 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 H +P W +A + L + A GR+DLR + V I +D+R D A+ + Sbjct: 221 HNLPADWSEAAIAALTDLAQTADANAIQGRLDLRSVFTVAIAADDSRPLDVALSLQPGES 280 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 GGW++ V +V+ Y+ + LD EA+ G + +P LP VL+ G+ DR Sbjct: 281 GGWQVMVHTVEVAPYLPLQSDLDLEAQRHGIDLRLGETALPFLPPVLTQGVGRFAVGEDR 340 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 + + V + G + Y+ +++ L+ + +L + E +K L+EL Sbjct: 341 RAVSLLIRVDATGAVQDYELQPSLVQLDQVLSPAEATDLLADSKAKGEG----IKALKEL 396 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 + + R ERGG FE I N E + I ++ ++E +I AN Sbjct: 397 QTIADLWRTQRRERGG--FELTVTPAIGNDEGALGVISRSPA--IAGAVQEILIQANRLV 452 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYA--ELLESVA 527 ++ + P L+ P +I + + A LGL + N+ E A +L ++ Sbjct: 453 TEHLQALELPVLYVGQRSPDLGSIQDAQRLAAGLGLAIEVDENETELNRLALQQLSDATQ 512 Query: 528 DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL- 586 A +L +LL++ K + Y HF L L++Y HF +P +RY DL L R I L Sbjct: 513 TSELASLLDHLLLQTFKPSFYSTLAVPHFSLGLETYGHFVAPSQRYADLWLQRVILALFQ 572 Query: 587 ---------AKEQGHQGNTTETGGYHYSM----------EEMLQLGQHCSMAERRADEAT 627 +KE + +++ G ++S+ ++ L Q S AE+RA EA+ Sbjct: 573 QGRDRRSSRSKEGVNIRHSSSHGQINWSVLPPEVQTELETDLKLLAQQLSEAEKRATEAS 632 Query: 628 RDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQV 687 D K +G F GVI V +GFFV+++ L ++GLVHVSS +D+Y + Sbjct: 633 ADYQGLQKAAAAKACIGQTFAGVIRGVQSYGFFVQIEALQVEGLVHVSSPKDDWYEYRSR 692 Query: 688 GQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 QRL+G + + + LGDRVEV + V+ ++ID ++ Sbjct: 693 QQRLIGRKNRRQFGLGDRVEVEIRNVDYYRQQIDLGVL 730 >UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 168/646 (26%), Positives = 294/646 (45%), Gaps = 43/646 (6%) Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVR 143 L +GTV G +GF+ + +L ++M GD+V + D G+ +A + Sbjct: 33 LYEGTVKGTGKKFGFVVNAADGSEHFLPPDEMSRVFPGDEVRFTIVDQD-DGKTKAELEE 91 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 ++ + G +F V P DS + +PP Q A +V ++ + P Sbjct: 92 LIRSPLDEFNGVFFVRGKAQGVEPFDSAFGGWLFVPPKQTSHANNKDLVRAKVVRHPWDT 151 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 KA ++++ LG +AL IP + A +Q L E PE R DL Sbjct: 152 GKAQAEVLKSLGSADNNRSWYSVALAEQGIPEAFSDAELKQAKALAEAGPE-TDPSRQDL 210 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 DLP VTID +D DDA++ + GW+L VAIAD S Y+ + LD+ A+ R T+ Sbjct: 211 TDLPFVTIDAASTKDMDDALFA-RPTENGWQLSVAIADASAYIPLDSELDKAAQKRLTTT 269 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y P +PMLPE+L++ SL P R M+ +M + G ++ ++ + A + S A+L Y Sbjct: 270 YLPGLTLPMLPEILADSAMSLVPDETRPAMIFQMQIDRDGNVSDFEIFPATVRSQAKLAY 329 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 V H + + + E + ++L+ L++ + L R + + + + + + Sbjct: 330 DDVAHWFENNA-IPESHQ---ENLQALNDATQALASWRRKNANPMKDRVDYRIRVDDHFQ 385 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH--DKPSTEAITSFRSVL 501 + I Q +N A L+EE MI+ N +A++++ +P LF H KP E T + +L Sbjct: 386 VTDIVQEHKNPARALVEEAMIVTNYQSAQWLQ--DQPGLFMCHLGFKPDRE--TELKGLL 441 Query: 502 AELGLELPGGNKPEPRDYAELLES--VADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 + ++ N + D+ +++ + D P L +L + + + E + HFGL Sbjct: 442 RDYTPDVAELNGHDLADFRKIMAASQTIDFP----LYAVLQKRFDRGFWSREAQPHFGLG 497 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 L Y + TSPIR+Y DL +HR IK LA + + S+ Sbjct: 498 LSRYTNVTSPIRKYSDLCMHRLIKAKLAS------------------RALPDIDHALSLL 539 Query: 620 ERRADE---ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 R + A + + + L+ ++ Q ++G I + VRLDD G V + Sbjct: 540 NERGNVSRFAAQKIENRLRYQWLSQQPEQTYRGTIVHLNANNLMVRLDDCGAVGQVDLRK 599 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 D + +D + R+M + Y+L V V++ +V+ ++ K++ Sbjct: 600 R-KDEFSYDPL--RMMLKFEEFQYQLEQEVTVKIASVSAEQLKLEI 642 >UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLE6_9HELI Length = 719 Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 169/608 (27%), Positives = 284/608 (46%), Gaps = 67/608 (11%) Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 R+ Y L + + G V ++GYGF+ +G D + +K GD VL++ Sbjct: 37 VRKNRYVLKRKFCI--GKVELTKEGYGFVIPLPKGNGRDWLVEKHLLKGAQKGDIVLSKM 94 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRY--FTEAGVGFVVPDD-------SRLSFDILIP 179 L R A+++ +L K S ++ + + +P++ ++ S L P Sbjct: 95 LNKSHNTRIYAKVIEILETKQSSVLCYLEKYKLDCMAISIPNEIPYKIKATQKSLKTL-P 153 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P+ ++ + G+I+E+LG + IAL ++ + Sbjct: 154 PNTLL-----------------KLNPKNGEILEILGALSDPQIDETIALSLYDRQESFSL 196 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 E + K ++ K R D LP ID A+D DDA++ +++ L++AI Sbjct: 197 QAELEAESFKPVRLKDFKE-RADCTHLPFCAIDPVGAKDHDDAIFYDEENST---LYIAI 252 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVSYYV+ + LD EA+ RG SVYFP + IPMLP LS LCSL+ RL MV ++ + Sbjct: 253 ADVSYYVKKDSALDLEAKMRGFSVYFPHKSIPMLPRTLSENLCSLSAGELRLAMVWKIRL 312 Query: 360 --SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 +K L + +EA++ +LTY +V +L+ + + L L L++L + L Sbjct: 313 HKCTKAVLNS-ELFEAIIKVSQKLTYEEVDLLLESKKS-KTIKTNLKSMLFALNDLAQKL 370 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 + R + G F +++ + ++ ++ + +H+L+EECM+LANI +A K Sbjct: 371 RQKR-LKNGFDFLGDKSVMELDKNLELKDLKLQSQTLSHQLVEECMLLANIQSALLQSKQ 429 Query: 478 KEPA----------LFRIHDKPSTEAITSFRSVLAELGL----ELPGGNKPEPRDYAELL 523 P+ ++R+H+ P E+I + LG+ ++P K ++ E+ Sbjct: 430 STPSTQRDERLKLGIYRVHNAPKLESIQDLFTEFRLLGIYHKKKIPKYTKDFHKEILEIQ 489 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 A + +++RSM+QA Y N GHFGL +SY+HFTSPIRRY DL LHR +K Sbjct: 490 ALTKHSNMAAEVDKLIIRSMQQATYASHNIGHFGLGFESYSHFTSPIRRYSDLLLHRILK 549 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 Q N S+E + Q+ + S ER + D D ++ ++ Sbjct: 550 ------DKIQFNPN-------SLESLPQICEDLSQKEREVAKIELDFKDRKFARYLNKKI 596 Query: 644 GNVFKGVI 651 G + GVI Sbjct: 597 GQAYVGVI 604 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 179/629 (28%), Positives = 299/629 (47%), Gaps = 58/629 (9%) Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQ- 127 + +C L E+ L+KG++ F+++ DL++ E ++GD V Q Sbjct: 628 LSNTECEILLEQGKLLKGSIQVFSRLDSFVKIGDGVKDLHVQGLESRNRALNGDIVAVQL 687 Query: 128 -PLGADRKGRREARIVRVLVPKTSQIVG-----RYFTEAGVGFVVPDDSRLSFDILIP-- 179 P ++ +++A +V+++ K +IV Y G + P DS I++P Sbjct: 688 LPDQEEKTRQKKAEVVKIIEEKHPRIVPGQVKPYYGHRYGFAIMFPTDSSFPI-IMLPLK 746 Query: 180 --PDQIMGARMGF---VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 P + + F + + ++T A GK+V LG++ G+ A A+ + Sbjct: 747 NFPKDFIDRPLDFEKSLFLAKITNWDQNLYYACGKLVSFLGES-GSVEAETEAIIKKNLI 805 Query: 235 YIWPQAVEQQVAGLKEE----VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 Y P + ++ + L ++ +P E R DLR + TID ARD DDA+ C+K Sbjct: 806 YDTPFS-KKCLKTLPQKNTWCIPSEELNKRSDLRKECIFTIDPSTARDLDDALSCKKIAD 864 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 + + V IADVSY+V+ ++ LD+ A+ R TSVY +VIPMLP +LS LCSLNP VDR Sbjct: 865 DLYEVGVHIADVSYFVKENSALDKVAQLRATSVYLTQKVIPMLPSILSEDLCSLNPGVDR 924 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-------QDLREQYAPL 403 L + S G + KF V+ S +LTY + +++ D + Y Sbjct: 925 LAYSVIFNIKSDGTIINEKFVRTVICSQVKLTYCQAQQLIENQLTDYLITNDFPKIYGGF 984 Query: 404 V-----KHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER-RIERIEQTQRNDAHK 457 L L + K L K R G IS+ E F N E+ + + + D++K Sbjct: 985 TLENIKDSLYTLFQISKNLRKQRHNAGAISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNK 1044 Query: 458 LIEECMILANISAARFVEKAK-EPALFRIHDKPSTEAITSFRSV--LAELGLELPGGNKP 514 LIEE M+LAN+S AR + +A + A+ R H P+ + + L EL +L G N+ Sbjct: 1045 LIEEFMLLANMSVARKIYEAHPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDL-GSNQS 1103 Query: 515 EPRDYAEL------LESVADRPDAEML-QTMLLRS--MKQAIYDPENRGHFGLALQSYAH 565 + +L L++ + ML + LL S A+ + ++ H+GL + Y H Sbjct: 1104 INKSLEKLSGLENELKTFLEPAIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTH 1163 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRYPD+ +HR + L + + S+E++ ++ C++ + AD+ Sbjct: 1164 FTSPIRRYPDILVHRCLTAALDSK----------FAVNKSVEDIKRITDQCNIKKYNADK 1213 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSV 654 A+ + ++ C F++ KGV+ +V Sbjct: 1214 ASEESSELFFCLFLMQSGSLQEKGVVVAV 1242 >UniRef50_C7JES0 Ribonuclease R n=8 Tax=Acetobacter pasteurianus RepID=C7JES0_ACEP3 Length = 676 Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 171/562 (30%), Positives = 241/562 (42%), Gaps = 88/562 (15%) Query: 121 GDQVLAQPLGADRKGRREARIVRVL------VPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 GD VL + A +REAR +R+L +P T + ++P D+RL+ Sbjct: 119 GDIVLVRLRPATGTQKREARGLRLLTRLDNNLPVTPARTPEHL-------LLPCDARLNL 171 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 L P + + + T G++ VLG GM ++L H P Sbjct: 172 P-LTPEENASSLPLTPRQIGLATPHALPDGTYAGRVHSVLGCADDAGMPSRLSLLIHHPP 230 Query: 235 YIWPQAVE-------QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK 287 + + E QQ A L+ A +GR DLR LPL+TID A DFDDA++ E+ Sbjct: 231 TAFSEQAEAEARQIAQQNAALQGA---PAPSGRTDLRHLPLITIDDASAHDFDDALWAEQ 287 Query: 288 KRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 G+ L VAIADV+++V+P + LD EAR RG S+Y P +V+PMLP LS CSL P Sbjct: 288 T-ADGFHLIVAIADVAHWVKPGSALDEEARERGNSIYLPDKVVPMLPLALSAQACSLLPG 346 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG---DQDLREQYAPLV 404 DRLC+ +M ++ +G + + +M S ARLTY V H L ++ + Sbjct: 347 QDRLCLFADMHITPQGHVVSAQINRGIMQSAARLTYEAVQHAFDATPHQTSLPPEHPAAL 406 Query: 405 KHLEELHNLYKV---LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 L L KV + +A +RG + E F+A + +AH ++ Sbjct: 407 LPPTLLPTLRKVGATIRQAATQRGVMEREETGWNVQFDATGQPCAFVPRNTQEAHYMVAA 466 Query: 462 CMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAE 521 CMILAN AA ++ PALFR H +PS ++ PR A Sbjct: 467 CMILANQIAAEKLQAQALPALFRTHAQPSPDS----------------------PRPMAR 504 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 Y H+GL L +Y HFTSPIRRY DL HRA Sbjct: 505 --------------------------YSTRAAPHYGLRLGNYTHFTSPIRRYADLLAHRA 538 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD 641 + A + Q ET Y + L + ERRA +D + L F+ Sbjct: 539 LTQ--ANDSSMQA---ETSAY----TPDVALASQLNFTERRAATIMQDSLNRLAAIFLAP 589 Query: 642 QVGNVFKGVISSVTGFGFFVRL 663 VG + + T G VRL Sbjct: 590 LVGQRMSAHVMTATRHGLRVRL 611 >UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5A6_SCHJY Length = 859 Score = 201 bits (512), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 181/350 (51%), Gaps = 18/350 (5%) Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + +E +A R D ++TID E ARD DDAV C G +R+ V IADVS++V+P T Sbjct: 350 ITDEERAKRRSFLDQIVLTIDPETARDLDDAVSCIDNGDGTYRISVHIADVSHFVKPETA 409 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EAR+R T+VY + IPMLP +L LCSLNP V+RL E V GR G +++ Sbjct: 410 LDNEARSRATTVYLVQRAIPMLPTLLCERLCSLNPSVERLAFSVEWLVDRNGRELGPRWF 469 Query: 372 -EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK---------HLEELHNLYKVLDKAR 421 ++++ + RLTYT+ +IL+G P+ + L+ + K L KAR Sbjct: 470 GKSLIKTCCRLTYTEAQNILEGKSWEEGVGKPISDGFKATDVEVSIRNLNIIAKALRKAR 529 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEP 480 + G +S + E KF + + ++ E + DA++LIEE M+ AN S A + Sbjct: 530 FDNGAVSVNTSELKFRLDEQGLPQKCEVYEHKDANRLIEEFMLFANRSVAEKISNHFPHV 589 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL R H P + + F LA LG + G D + L E+++ M Sbjct: 590 ALLRRHAPPKEKQLGEFIRFLAHLGFDFDGSTSARFNDSLQRLREKFPSDITELIENMAA 649 Query: 541 RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 RS+++A Y H+ LA Y HFTSPIRRYPD+ +HR ++ Sbjct: 650 RSLQRAEYFCTGSTDSVSEWLHYALAFSHYTHFTSPIRRYPDIIVHRLLE 699 >UniRef50_Q9ZJX9 Ribonuclease R n=18 Tax=Helicobacter RepID=RNR_HELPJ Length = 644 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 137/399 (34%), Positives = 201/399 (50%), Gaps = 32/399 (8%) Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R++ +P +TID +DA+DFDDA++ +K++ L+VA+ADVS +V + LD+EAR R Sbjct: 211 RINYSHIPFITIDPKDAKDFDDAIFYDKEKNT---LFVAVADVSEFVPKHSSLDKEARIR 267 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G SVYFP+ V PMLP LS G CSL RL +V E+ + + L + + V+ A Sbjct: 268 GFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLALVYEIPLDN---LKNARLSQGVIEVRA 324 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA-----REERGGISFESEEA 434 Y ++ H L Q + L K L++ +L L+ A + G +F S E Sbjct: 325 NCAYEEINHFLNTQQ------SSLGKDLQQ--SLLGFLEVALKLKKERLKKGFNFNSFEN 376 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE-KAKEPALFRIHDKPSTEA 493 K N E RIE+IE + + AH LIEE M+LAN S+AR ++ ++R H +PS E Sbjct: 377 KLYLNEEGRIEKIETEKESGAHTLIEEAMLLANQSSARLLDGHFHNRGIYRTHKEPSLEQ 436 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM-LQTMLLRSMKQAIYDPEN 552 L + + P P + E ++ E + ++++S A+Y P Sbjct: 437 QKRLYDKLFDYEIVRPKNMGFFP--FLEHALKISQEKSIEREVSRLIIKSQNLALYSPMQ 494 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 HFGL SY HFTSPIRRY DL LHR +K LL HQ G Y +EE +L Sbjct: 495 ESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLF----HQAK-----GCSYLLEETPEL 545 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 + +++A RD L+ + F GV+ Sbjct: 546 CAELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVV 584 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 154/533 (28%), Positives = 256/533 (48%), Gaps = 50/533 (9%) Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL------KEEVPEEAKAGR 260 +G ++GD+ T D+ L H + Y +A +QV K ++P+ R Sbjct: 420 LGHFKMLIGDSGDTKAEGDVILLEHNVEY---RAFSKQVLDCLPPQDDKWQIPQSEIKKR 476 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 VDLR + + +ID +D DDA++C G + + V IADVSY+VRP T +D+EA+NR Sbjct: 477 VDLRGINVCSIDPPGCKDIDDALHCISLPNGNFEVGVHIADVSYFVRPDTAIDKEAQNRC 536 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 T+VY + MLP++L+ LCSL DRL + + +++++++ S A Sbjct: 537 TTVYLVDRRTDMLPKLLTETLCSLKDDGDRLAFSVVWVMDKDANIIETRYHKSIIRSVAS 596 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 L Y K ++ D E L K + L+ L K L + R E G +S S + KF F+ Sbjct: 597 LNYGKAQSMIDDVNDNSE----LTKSIRNLNMLAKKLKQKRIENGALSLASTQVKFTFDD 652 Query: 441 ERRIE-RIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFR 498 E ++ Q + + LIEE M+L N++ A + V ++ R H +P + I Sbjct: 653 ETHNPVDVQFYQMYETNSLIEEFMLLGNVAVAEKIVSHFPSISILRQHSQPKPKQIKELS 712 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPD----AEMLQTMLLRSMKQAIY------ 548 +L ++G L + R+ A+ L+ V +RP+ ++++ M RSM +A Y Sbjct: 713 QILQKIGFNLDYSSN---RNLADSLDKV-NRPNDHFFNKLVRIMTTRSMNEATYFCTADA 768 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 D H+GLA Y HFTSPIRRY D+ +HR + + E Y + + Sbjct: 769 DYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLLAAAIDIEA--------IPAYMSNKLK 820 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLD-QVGNVFKGVISSVTGFGFFVRLDDLF 667 M ++ + +M R A A+R +D+ F D Q+ V ++SS++ G V + Sbjct: 821 MAKICEKMNMRNRMARFASRSSSDYNTYLFFKDKQIEEV--AMVSSISKTGATVVVPRYG 878 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESS--------GQTYRLGDRVEVRVEA 712 ++G + S + D +++ Q L S G ++L D ++VRV Sbjct: 879 LEGQIKFS--EKDLKENEKLLQELKQNQSLIIDFVVNGNRHKLFDYLKVRVSV 929 >UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1SWZ6_PSYIN Length = 656 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 182/666 (27%), Positives = 298/666 (44%), Gaps = 71/666 (10%) Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 +P+R VK T GYGFL + K ++ +MK +HGDQ+ A G K Sbjct: 19 IPKRQGKVKAT----DRGYGFLETDKGKR-FFIPPSEMKKVLHGDQINAFIRGKGDKSTA 73 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM---GARMGFVVVV 194 E ++ ++ + R + ++P + L I Q + G + G V V Sbjct: 74 EPNQLKK--TGSAVFIARLVIKQKNISIIPKNPLLKGFFKIKGSQSLQSRGYQDGDWVKV 131 Query: 195 ELTQRPTRRTKAVGKIVEVLGD-------NMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 EL + +I+E + D + T ++A + E + W + ++ Q++ Sbjct: 132 ELVSHALEGNGFLTQIIEKIADASDPFAYRLLTVATHNLANKAPEFDHPW-KIIDPQLS- 189 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 R DL P TIDG + +D DDA+Y E G W+L VAI+D S YV Sbjct: 190 ------------RSDLTKTPFFTIDGVNTQDMDDALYIEADENG-WKLTVAISDPSAYVP 236 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 ++ +D EA+ R ++Y P+ +PMLP LS+ LCSL R + C + ++ KG + G Sbjct: 237 ENSDMDAEAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEG 296 Query: 368 Y-KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDK---AREE 423 FY A + SH RL YT V + L+ ++ + + P + E+L L + K R + Sbjct: 297 EPAFYGAWIKSHYRLNYTDVSNYLENEELSNDCWKPSTQLAEQLRTLDSLSLKRLQWRTD 356 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 + + N + I I R A++L+EE MI ANI A F+ K K+ +F Sbjct: 357 NNAVFKNQPDYTLKLNNKGEISEILCEPRRSANRLVEESMIAANICAGDFLAKHKQQGVF 416 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL--R 541 H S+E + S+L+E G+E + + A + R +L L R Sbjct: 417 NTHSGFSSERLGKVVSLLSEFGIE------SDIQTLATVTGYTKIRQQTNLLHNSYLDHR 470 Query: 542 SMKQAIY-DPEN--RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 K Y D +N HF L + YA +TSPIR+Y DL HR IK +L KE Q + Sbjct: 471 LRKLLSYADIKNTPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLLKEDNIQIDN-- 528 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--FKGVISSVTG 656 ++GQ + A + A RDV + L ++ +QV + +K I + Sbjct: 529 ------------EIGQVLNAARKLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIK 576 Query: 657 FGFFVRLDDLFIDGLVHVSSL---DNDYYRFD---QVGQRLMGESSGQTYRLGDRVEVRV 710 G V++ + + S L +D + D +G+ ++ + + +LGD ++V + Sbjct: 577 AGIRVKIQENGATFFIPCSLLCKDSSDATKIDCNQALGKVIIAQQT--ELQLGDVIDVML 634 Query: 711 EAVNMD 716 V ++ Sbjct: 635 NNVKVE 640 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 171/580 (29%), Positives = 264/580 (45%), Gaps = 53/580 (9%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKE 250 +VV + P G +V+ LG+ + L H+IP+ + ++V + L Sbjct: 393 IVVSIDSWPRDSRYPQGHLVKALGEVGDRATENQVLLLEHDIPHQCFSRSVLDCLPSLPW 452 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + + + R DLR L + ++D D DDA++C + G + + V IADVSY+VRP T Sbjct: 453 TIGPKEEKNREDLRHLCICSVDPPGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGT 512 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA NRGT+VY Q I M+PE+LS LCSL +RL VS + + KF Sbjct: 513 ALDKEAANRGTTVYLVDQRIDMVPELLSANLCSLRGGEERLAFSAIWEVSPEAEVLHTKF 572 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 +++++ S A LTY + + D L ++ L L L+ L K+L R G ++ Sbjct: 573 HKSIIKSRAALTYAEAQARID-DTSLNDE---LTLGLRGLNRLAKILKAKRIANGALTLA 628 Query: 431 SEEAKFIFNAERRIERIEQT-QRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDK 488 S E +F ++E QT Q + + ++EE M+LAN S AR + ++ E AL R H Sbjct: 629 SSEVRFHVDSETHDPIDVQTKQLLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPA 688 Query: 489 PSTEAITSFRSVLAELG--LELPGGNKPEPRDYAELLESVADRPDAEMLQTML----LRS 542 P+ + G +E+ G + AE L+ D P+ ML R Sbjct: 689 PAPANLEPLVKAGHSKGFVVEVESGLR-----LAESLDRAVD-PEQPYFNVMLRMVATRC 742 Query: 543 MKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M +A+Y PE+ H+GLA+ Y HFTSPIRRY DL +HR LL G + Sbjct: 743 MARALYFCSGCVAPEDFDHYGLAMPFYTHFTSPIRRYSDLMVHR----LLGVCVGAEATY 798 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + + E L +MA+ + D +LD+ G Sbjct: 799 PDLVHKNKCQELCNNLNYRHNMAQYAGRSSVALYTQAFFRDKVLDE------------EG 846 Query: 657 FGFFVRLDDLFI----DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR--VEVRV 710 + FVR + L + GL L D + +DQ G T R DR V++ V Sbjct: 847 YVLFVRENALQVLMPRFGLEATLFLKEDGWSYDQEAN--TQTCGGVTLRQFDRLVVQLSV 904 Query: 711 EAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKK 750 ++ N+ +K+ L+ P+ G + A+K D +K Sbjct: 905 DSRNVQHQKVVVKLVD----PKIPGVSVEPSARKADDTQK 940 >UniRef50_UPI0000D53949 ribonuclease R n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D53949 Length = 286 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 155/282 (54%), Gaps = 9/282 (3%) Query: 449 QTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 + R +H +IEE M+ ANISAA+ K P+++R+H KP + + S L + Sbjct: 6 SSPREISHMMIEEFMLAANISAAKLSIKHGIPSVYRVHPKPDILKVKALESFLRSRKINA 65 Query: 509 PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTS 568 + + L+E DR D +++ + +L SM A Y+ + H+ L Y+HFTS Sbjct: 66 VLDSGSDIGKLTSLIEIAEDRKDKDIIHSQILYSMSLATYEADVAEHYALNYAHYSHFTS 125 Query: 569 PIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG-----YHYSMEEMLQLGQHCSMAERRA 623 PIRRYPDL +HRAIK L+ Q H+G + Y Y ++++ L + CS ER A Sbjct: 126 PIRRYPDLLVHRAIKSLI---QTHKGEVRISDDPISDEYPYDYDKLVDLSKECSTKERIA 182 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD-NDYY 682 ++A RD +LKC F + VG F G I VT FG F+ L +L I+GL HV + ++YY Sbjct: 183 EKAERDALTYLKCSFASENVGKPFNGRIVGVTNFGIFIHLTELNIEGLCHVKNFPRSEYY 242 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 FD+ + L SS +Y LGD V+ +E V+ +KID SL Sbjct: 243 VFDEDSKMLQSNSSRHSYSLGDTVKTVIEKVDFFSQKIDLSL 284 >UniRef50_C9R3S6 Exoribonuclease II n=7 Tax=Gammaproteobacteria RepID=C9R3S6_AGGAD Length = 659 Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 196/679 (28%), Positives = 302/679 (44%), Gaps = 90/679 (13%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 V+GTV YGFL E K +++ MK +HGD++ A +++G +E Sbjct: 22 VEGTVKSTDKAYGFLECE--KKSYFIAPPAMKKVMHGDKISA---TIEKQGDKEQAEPEA 76 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP-DQIMGA----------RMGFVVV 193 L+ I+ R+ A V F D +L + P +Q +GA + G VV Sbjct: 77 LI---EPILTRFI--AKVRF--NKDKKLQVLVDHPNINQPIGAAQNKSVKKELQEGDWVV 129 Query: 194 VELTQRPTRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 L P R + +I + + + L HE P + V G +++ Sbjct: 130 ASLKTHPLRDDRFFYAQITQFICHADDELAPWWVTLARHEQP-------REPVQG-QDQY 181 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGWRLWVAIADVSYYVRP 308 + K R +L L VTID E +D DDA+Y E GW+L VAIAD + Y+ Sbjct: 182 EMQDKETRENLTALHFVTIDSETTQDMDDALYIEPLTSNNEQTGWQLLVAIADPTAYISL 241 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG- 367 + ++++A+ R + Y P IPMLP LS+ LCSL P R +VC + +G + Sbjct: 242 DSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLKPNETRPALVCYIQTDLQGNIIAP 301 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVLDKAREERGG 426 KF A + S A+LTY++V L+G ++ + + + + + LH + R+ Sbjct: 302 AKFVLANVQSKAKLTYSRVSDYLEGKENAWQPENQDMAQQIHWLHQFSLARTQWRKTHAL 361 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 + E + F+ +++ I+ R A++++EE MI+ANI AA+F++K + +F H Sbjct: 362 LFKEKPDYSFVLGENGKVQEIKAEYRRIANQIVEESMIIANICAAQFLQKNLQCGIFNTH 421 Query: 487 ---DKPSTEAITSFRSVLAELGLELPGGNKPE--PRDYAELLESVAD----RPDAE---- 533 DK E F +LA L E NK E R E L ++ R D E Sbjct: 422 SGFDKKFLENAHHF--LLASLANE---ENKAELQARYTVEHLATLNGYCQMRHDIEPIEG 476 Query: 534 -MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 L+ L R + A + E HFGL L YA +TSPIR+Y D+ HR IK LA Sbjct: 477 DYLEFRLRRFLTFAEFKAELAPHFGLGLNGYATWTSPIRKYSDMVNHRLIKAYLAHR--- 533 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--FKGV 650 Y E +L Q A R+ RD+ADWL C ++ D+V F+ Sbjct: 534 --------PYEKPEESVLVRLQE---ARRQNRLVERDIADWLYCRYLADKVAEKVEFEAE 582 Query: 651 ISSVTGFGFFVRL----DDLFIDG-LVHVSS----LDNDYYRFDQVGQRLMGESSGQTYR 701 + +T G V L +FI +H + ++ D F QRL Y+ Sbjct: 583 VQDITRGGLRVLLLANGASIFIPASTLHDNKEEIVINTDEIAFYVKDQRL--------YK 634 Query: 702 LGDRVEVRVEAVNMDERKI 720 +GD + V++ V R I Sbjct: 635 IGDILRVQLTEVKEATRSI 653 >UniRef50_D1R8V1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8V1_9CHLA Length = 486 Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 145/490 (29%), Positives = 222/490 (45%), Gaps = 87/490 (17%) Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGG-GWRLWVAIADVSYYVRPSTPLDREARNRG 320 DLR L ++ID D++D D Y E + G RL+VA+ADVS V+ + +D +A+N Sbjct: 51 DLRHLLWISIDNIDSKDLDQLTYAEPMQNGKTHRLYVAVADVSGTVQKESLIDLQAQNNT 110 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TS+Y PS + PML LS + SLNPQVDR +V EM + G+ Y A + +H + Sbjct: 111 TSIYTPSVIFPMLHPKLSTDITSLNPQVDRNAVVVEMEIDEAGKFELLDVYLANVHNHQK 170 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLY-KVLDKAREERGGISFESEEAKFIFN 439 L Y V L+ + L + +P V +L +L + + RE+ G ++F++ E K I Sbjct: 171 LAYPTVSEWLEHGKPL-QSVSPEVHEQLKLQDLISNKIQQFREQLGTLNFDTIEVKPILE 229 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS-TEAITSFR 498 + + + + H LIE CMI AN ++++ K P L RI KP E I Sbjct: 230 NHIPVA-LSKVVSDRGHTLIENCMIAANSCLSKYLISQKVPILKRIVKKPQRWEKIVEIA 288 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP-------- 550 + D S+ P+A+ LQ LL+ KQ DP Sbjct: 289 KI----------------HDV-----SLPHEPNAKALQNFLLQQQKQ---DPLRFPDLSL 324 Query: 551 ------------------ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 E GHF LAL+ YAH T+P RRYPDL + R +K L K+ Sbjct: 325 TIIKLIGRGEYVPSYPGNEAPGHFDLALEDYAHTTAPNRRYPDLIMQRLLKSFLQKQNP- 383 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIS 652 YS E+ L QHC+ E A++ R + + +Q+G ++ +++ Sbjct: 384 ----------SYSDAELQTLAQHCTKKEEDANKVERHLKKSAAAMILKNQIGQIYSAIVT 433 Query: 653 SVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA 712 + G +VRL D ++G L + + D +GD +EV + Sbjct: 434 GASSKGTWVRLLDPPVEG-----KLVSGFKHLD----------------VGDTIEVELLQ 472 Query: 713 VNMDERKIDF 722 V++ + IDF Sbjct: 473 VDVAQGYIDF 482 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 161/556 (28%), Positives = 255/556 (45%), Gaps = 47/556 (8%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKE 250 ++V + P G V LGD ++ L H++P+ + QAV + + Sbjct: 398 IIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 457 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + E+ R DLR L + ++D D DDA++C + G + V IADVS+++RP Sbjct: 458 SITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGN 517 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C ++ + KF Sbjct: 518 ALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKF 577 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V++S A LTY + Q D + L L+ L K+L K R E+G ++ Sbjct: 578 TKSVINSKASLTYAEA----QLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLS 633 Query: 431 SEEAKFIFNAERRIERIEQTQR-NDAHKLIEECMILANISAARFV-EKAKEPALFRIHDK 488 S E +F ++E QT+ + + ++EE M+LANIS A+ + E+ E AL R H Sbjct: 634 SPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPA 693 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML----LRSMK 544 P LE+ + AE L+ A+ P L T+L R M Sbjct: 694 PPPSNYEILVKAARSRNLEIKTDTA---KSLAESLDQ-AESPTFPYLNTLLRILATRCMM 749 Query: 545 QAIY----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 QA+Y + H+GLA Y HFTSPIRRY D+ +HR LLA G E Sbjct: 750 QAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHR----LLAVAIGADCTYPELT 805 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 H ++ + ++ + + A A R + F KG++S + F Sbjct: 806 DKH----KLADICKNLNFRHKMAQYAQRASVAFHTQLFFKS------KGIVSE-EAYILF 854 Query: 661 VRLDDLFI-------DGLVHVSSLD--NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV- 710 VR + + + +G V D N +D L E + + + D+V+V++ Sbjct: 855 VRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKVKIM 912 Query: 711 -EAVNMDERKIDFSLI 725 ++ N+ +KI SL+ Sbjct: 913 LDSSNLQHQKIRMSLV 928 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 161/556 (28%), Positives = 255/556 (45%), Gaps = 47/556 (8%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKE 250 ++V + P G V LGD ++ L H++P+ + QAV + + Sbjct: 236 IIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPW 295 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + E+ R DLR L + ++D D DDA++C + G + V IADVS+++RP Sbjct: 296 SITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGN 355 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C ++ + KF Sbjct: 356 ALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKF 415 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V++S A LTY + Q D + L L+ L K+L K R E+G ++ Sbjct: 416 TKSVINSKASLTYAEA----QLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLS 471 Query: 431 SEEAKFIFNAERRIERIEQTQR-NDAHKLIEECMILANISAARFV-EKAKEPALFRIHDK 488 S E +F ++E QT+ + + ++EE M+LANIS A+ + E+ E AL R H Sbjct: 472 SPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPA 531 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML----LRSMK 544 P LE+ + AE L+ A+ P L T+L R M Sbjct: 532 PPPSNYEILVKAARSRNLEIKTDTA---KSLAESLDQ-AESPTFPYLNTLLRILATRCMM 587 Query: 545 QAIY----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 QA+Y + H+GLA Y HFTSPIRRY D+ +HR LLA G E Sbjct: 588 QAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHR----LLAVAIGADCTYPELT 643 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 H ++ + ++ + + A A R + F KG++S + F Sbjct: 644 DKH----KLADICKNLNFRHKMAQYAQRASVAFHTQLFFKS------KGIVSE-EAYILF 692 Query: 661 VRLDDLFI-------DGLVHVSSLD--NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV- 710 VR + + + +G V D N +D L E + + + D+V+V++ Sbjct: 693 VRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKVKIM 750 Query: 711 -EAVNMDERKIDFSLI 725 ++ N+ +KI SL+ Sbjct: 751 LDSSNLQHQKIRMSLV 766 >UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 Tax=Theileria RepID=Q4UH40_THEAN Length = 955 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 132/476 (27%), Positives = 231/476 (48%), Gaps = 38/476 (7%) Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 ++ E GRVD RD + ++D +D DDA+ C++ G + + V IADV+Y+V + Sbjct: 494 KITPELLGGRVDYRDEVVFSVDPPGCKDIDDALGCKRLSNGNFEVSVHIADVTYFVPEGS 553 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA R T+VY + MLP++L+ LCSL V+RL + G + KF Sbjct: 554 NLDKEASERCTTVYLVDRRTDMLPKLLTTNLCSLMSDVNRLTFSVYWEMDMNGVILATKF 613 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V+ S LTY + ++ + + L L+NL K+L K R ERG + E Sbjct: 614 SKSVIKSRRSLTYQQAQEMIDSSSN-----DEVSVSLRNLNNLSKILRKQRIERGAVELE 668 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS-AARFVEKAKEPALFRIHDKP 489 S E KF F+ ++ +E + + ++++EE M+LANIS A + E+ + +L R+H P Sbjct: 669 SSEVKFEFDMS-KVLNLESYKTYETNQMVEEFMLLANISVATKIFERFPKCSLLRVHPPP 727 Query: 490 STEAITSFRSVLAELGL-ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 E + L + + GN + + E++++ + + + R+M QA+Y Sbjct: 728 VEEKLNELNRTLQQQNITSFKYGNSKQLNESLEIVKNEKNDKFTTATKILTTRTMSQALY 787 Query: 549 ------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 D + H+GL + Y HFTSPIRRY D+ +HR + L Sbjct: 788 RNSNDLDEDEFKHYGLCCEYYTHFTSPIRRYADVIVHRLLASALDLAP------------ 835 Query: 603 HYSMEEMLQLGQHCSMAERR---ADEATRDVADWLKCDFMLDQVGNV-FKGVISSVTGFG 658 ++ + L C + +R A +R+ +D + Q+G+V G++ + Sbjct: 836 -LNVNFIQSLSGQCDLLNKRHRNAQWCSRE-SDKMFSYLYFKQMGDVECNGIVLDINEDR 893 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 V + I+ + +V +Y FD+V + L+ + +G ++ D+V+VR+ N Sbjct: 894 VVVLTLEYGIEAVANV-----EYKSFDKVNKVLV-DLAGNVLKVFDQVKVRLYTCN 943 >UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NXM9_COPC7 Length = 1426 Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 147/530 (27%), Positives = 252/530 (47%), Gaps = 36/530 (6%) Query: 179 PPDQIMG--ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 PPD + A + V + + P G +VE LG + L+ P Sbjct: 768 PPDFVQNSEAYADKLFVACIKRHPISSLHPFGTLVEELGPIGDIEVETSALLKDCNFPTE 827 Query: 237 -WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295 + + V + + + +PE R DLR+ + TID E A+D DDA+ + G + + Sbjct: 828 EFSENVLKCLPPIPWTIPEHEFKTRKDLREERIFTIDPETAKDLDDALSVKANEDGTYDI 887 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 V +ADVS++V+P+T LDR+AR R TSVY +V+PMLP LS LCSL P DRL Sbjct: 888 GVHVADVSFFVKPNTALDRDARKRATSVYLVQRVVPMLPPALSEQLCSLIPGEDRLAFSV 947 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG---DQDLREQY--APLVKHLEEL 410 T++ + ++ F + ++ S A+L+Y ++++G D + Y + + + ++ L Sbjct: 948 IFTINKEAKVLKKWFGKTIVRSTAKLSYRDAQNVIEGKNFDAPVGGNYNASDIEEDIKVL 1007 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 ++ K L R G ++ ES + +F + + +R DA+ LIEE M+LANI+ Sbjct: 1008 DSISKKLRAERFNNGALTLESLKLRFTLGEDGLPTDCGEQERLDANALIEEFMLLANIAV 1067 Query: 471 ARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLES---V 526 A+ + E AL R HD P + +F LG ++ + L++S + Sbjct: 1068 AQQIAVHLPEQALLRRHDSPIERRMNTFLRRAERLGYKM------DISSAGALMKSFNAI 1121 Query: 527 ADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 D ++L+ + ++ +A Y D GH+ L + Y HFTSPIRRY D+ +HR Sbjct: 1122 TDPTARKLLELVSFKATHRAKYFCAGMLDIAKYGHYALNVPLYTHFTSPIRRYADVLVHR 1181 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 ++ L QG GN + + + + ++ Q C++ A A A C + Sbjct: 1182 QLEATL---QG--GNDVK---FTMDRDAVAKVAQQCNIKRDSAILAEEQSAHLFLCVLIS 1233 Query: 641 D---QVGNVFKGV-ISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 D + G V + + +V F V + + I+ VH+ + + + +D+ Sbjct: 1234 DLATRYGPVIRPAKVINVLDAAFDVLIPEFGIEKRVHIDQMPIENHVYDE 1283 >UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina RepID=Q5KDY7_CRYNE Length = 1671 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 152/548 (27%), Positives = 247/548 (45%), Gaps = 41/548 (7%) Query: 167 PDDSRLSFDILIPPDQIMG-------ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMG 219 P D R+ I IP +Q A + V + + P G +VE LG Sbjct: 1015 PTDKRVPL-IAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPFGTLVEELGAIGN 1073 Query: 220 TGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARD 278 + + L+ P + + + + + VPE R DLR+ + TID ++D Sbjct: 1074 SEVETSALLKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERVFTIDPPHSKD 1133 Query: 279 FDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLS 338 DDA+ + + G + + V IADVS++V+ + LDREAR R TSVY + +PM P +LS Sbjct: 1134 LDDALSFKDNKDGTFTVGVHIADVSFFVKANAQLDREARKRATSVYLVQRAVPMFPPLLS 1193 Query: 339 NGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE 398 LCSL P +RL TV +G + KF + ++ S A+LTY +++G R Sbjct: 1194 EDLCSLVPDYERLTFSAIFTVDEEGNVLQKKFAKTIVKSCAKLTYDDALTVVKGGALPRS 1253 Query: 399 QYA--PLVKHLE----ELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQR 452 + + L +E LH++ + R E G + S + F F+A+ R + Q Sbjct: 1254 KTSRIHLATDIEGDIRSLHSIASKMRARRIENGAMVVSSSKVSFEFDAQGRPVDCQTYQN 1313 Query: 453 NDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 +A ++EE M+L N S AR + A E AL R H+ PS + SF + +LG ++ Sbjct: 1314 GEASVIVEEFMLLTNQSVARIIANALPEQALLRRHEPPSERRLESFVARATKLGFDM--- 1370 Query: 512 NKPEPRDYAELLES---VADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQS 562 +P L +S V D A + + + +++A Y D H+GL Sbjct: 1371 ---DPTSAGTLQKSFDKVLDNDSALCIDLLRKKVIQRARYFCAGMLDIAKFAHWGLNTPL 1427 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRY D+ +HR + L N E + +++ + Q C+M ++ Sbjct: 1428 YTHFTSPIRRYADVLVHRMLDACLTSP-----NPNEV-KFLMDRDQVAKAAQQCNMKKQS 1481 Query: 623 ADEATRDVADWLKCDFMLD---QVGNVFKGV-ISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 A A C + D G V + +++V F V + + ++ VHV + Sbjct: 1482 AKLAEEQSVHLFLCILINDLTEHYGPVVREARVTNVLETAFDVIIPEFGVEKRVHVDKMP 1541 Query: 679 NDYYRFDQ 686 + +D+ Sbjct: 1542 VETAVYDE 1549 >UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosaccharomyces pombe RepID=DIS3L_SCHPO Length = 927 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 112/350 (32%), Positives = 177/350 (50%), Gaps = 18/350 (5%) Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + E R DLR+ ++TID E ARD DDAV C G + + V IADV+++V+P + Sbjct: 433 ISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSA 492 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD+EA +R T+VY + IPMLP +L LCSLNP V+RL + S G+ G +++ Sbjct: 493 LDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWF 552 Query: 372 -EAVMSSHARLTYTKVWHILQGD-------QDLREQYAP--LVKHLEELHNLYKVLDKAR 421 + V+ + ARL Y++ +++G + + + P + + L + + L K R Sbjct: 553 GKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDR 612 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEP 480 +G + S E KF + + E ++ DA+ LIEE M+LAN S A + K Sbjct: 613 FAKGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNN 672 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 +L R H P + I F L + + + L S + E+ + M + Sbjct: 673 SLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENMAV 732 Query: 541 RSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 RS+ +A Y + + H+ L+ Y HFTSPIRRYPD+ +HR ++ Sbjct: 733 RSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLE 782 >UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria RepID=RNB_BUCA5 Length = 649 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 173/650 (26%), Positives = 286/650 (44%), Gaps = 46/650 (7%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 V+G V G+GFL V+ +K ++ + MK +HGD+++A L K R ++ Sbjct: 22 VEGIVKSTERGFGFLEVDPQKS-YFIPPKNMKNVMHGDKIIA--LLTTEKDREIVEPEKL 78 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ--IMGARMGFVVVVELTQRPTR 202 + P ++ VG+ + F+VPD L I P++ I + G V +L + + Sbjct: 79 IEPFLNRFVGKIEKKDNRLFIVPDYPFLKDLITCQPNKNCINIFQNGDWAVAQLKKHKLK 138 Query: 203 RTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 ++ E + + + L H++ P A E + LKE R Sbjct: 139 GDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEPLAEEDDLI-LKES------DNRK 191 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DL DL +TID + +D DDA++ +K G L VAIAD + Y++ + LD A R Sbjct: 192 DLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASKRIF 251 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG-YKFYEAVMSSHAR 380 + Y P IPMLP LS +CSLNP R + C +TV G ++ +F+ A + S ++ Sbjct: 252 TNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLAWIKSKSK 311 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 L+Y V ++ + + LH L + K R++ + +S E +F + Sbjct: 312 LSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVLFKDSIEYRFHVSE 371 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH---DKPSTEAITSF 497 +I + +R AHK+IEE MI+ANISAA F+ K ++ +H D + E SF Sbjct: 372 HGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGFDLVNAENAVSF 431 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 L L + + L V + + + + R + HF Sbjct: 432 ---LRSYNLNFTVKEITTLKGFCN-LRRVLNIISNNYIDSRIRRFQSFGDFSTIPGPHFA 487 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L YA +TSPIR+Y D+ HR +K ++ KE+ S++ + S Sbjct: 488 LGFSEYATWTSPIRKYSDMINHRLLKSIIKKEK--------------SIKPGEDIKIKIS 533 Query: 618 MAERRADEATRDVADWLKCDFMLDQ--VGNVFKGVISSVTGFGFFVRL----DDLFIDG- 670 RR A RDV+DWL F+ + F I+ ++ G RL ++FI G Sbjct: 534 EQRRRNRMAERDVSDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVFIPGT 593 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 L+H + F+Q ++ Y++ D ++V + + + R I Sbjct: 594 LIHPIR---EELNFNQESGKVFINGIMH-YKISDLIQVTLSDIRLKTRSI 639 >UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PF93_USTMA Length = 1423 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 135/456 (29%), Positives = 216/456 (47%), Gaps = 31/456 (6%) Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 L ++PE+ R D R + TID E A+D DDAV+ + G + + V IADVS++V+ Sbjct: 844 LPWKIPEKEYKTRRDFRSHRVFTIDPETAKDLDDAVHVVRLDNGNFEVGVHIADVSHFVK 903 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 + LDREAR RGTSVY + IPMLP LS LCSL P V+RL T++ ++ Sbjct: 904 LGSSLDREARKRGTSVYLVQRAIPMLPPTLSEELCSLVPNVERLAFSAVFTMNKDAQVIS 963 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQY-APLVKHLEE----LHNLYKVLDKARE 422 F ++++ S A+L Y +++G Q +E+ A K + + LH L + + R Sbjct: 964 SWFGKSIIKSCAKLAYADAQKVIEGGQLSKEKLEAHRPKEIGDDILILHQLAQKMRARRF 1023 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEPA 481 + G + ++ + F + DAH+LIEE M+ AN++ A+ + E A Sbjct: 1024 KTGALRIDNVKLSFKLDENGLPTDASVYCSYDAHRLIEEFMLQANMAVAQQIAAGLPELA 1083 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L R H+KP + F +G ++ + L + D + LQ ++ + Sbjct: 1084 LLRRHEKPLDRRLDGFLRRAKSMGYDI---DTSSGGALHRSLAKIKDDSARQALQALVTK 1140 Query: 542 SMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 SM QA Y D H+ L + Y HFTSPIRRY DL +HR ++ +L Sbjct: 1141 SMMQAKYFCTGMVDIAKYHHYALNVPLYTHFTSPIRRYADLMVHRQLEAVL--------- 1191 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 E + E M ++ Q C++ + A A A C ++ + + V+ S T Sbjct: 1192 -VEQDKFGVDREAMAKIAQQCNVKKDAAKMAQEQSAHLFLC-LLIHDLTMRYGPVVRSAT 1249 Query: 656 GFG-----FFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 G F V + + I+ VHV + + + +D+ Sbjct: 1250 VMGVLDAAFDVIVPEFGIEKRVHVDQMPIENHTYDE 1285 >UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria RepID=RNB_ENT38 Length = 644 Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 180/665 (27%), Positives = 287/665 (43%), Gaps = 79/665 (11%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 +G V G+GFL V+ +K ++ QMK +HGD+V A + +K R A ++ Sbjct: 23 EGVVKATEKGFGFLEVDAQKS-YFIPPPQMKKVMHGDRVTA--VIHTQKDRETAEPEELI 79 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM--GARMGFVVVVELTQRPTRR 203 P ++ VG+ + +VPD L I D+ + G V ++ + P + Sbjct: 80 EPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRADRNCEHDFKEGDWAVAQMRRHPLK- 138 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG---- 259 GD G D+ TH I Y V V + + +EA G Sbjct: 139 -----------GDR---GFYADL---THFITYSDDHFVPWWVTLARHNLEKEAPNGVATE 181 Query: 260 -------RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 R DL L VTID +D DDA+Y E+ G L VAIAD + ++ + L Sbjct: 182 MLDEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVAIADPTAWIAEGSKL 241 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKFY 371 D A+ R + Y P IPMLP LS+ LCSL P R + C MT+++ G + +F+ Sbjct: 242 DDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMTIAADGTIEDDIEFF 301 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 A + S A+L Y V + L+G + + + + + + L + + R+ + + Sbjct: 302 AATIESKAKLAYDDVSNWLEGAGNWKPESEAIAQQITLLQRVCLSRGEWRKTHALVFKDR 361 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH---DK 488 + +F+ + + I R A++++EE MI ANI AAR + ++ +H D Sbjct: 362 PDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGFDP 421 Query: 489 PSTEAITSFRS-----VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 +TEA+ + V + L L G + +L + +P L + + R Sbjct: 422 ANTEALAALLKTHDVHVDPQEVLTLEG--------FCKLRRELDAQPSG-FLDSRIRRFQ 472 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 A E HFGL L++YA +TSPIR+Y D+ HR +K ++ E + T Sbjct: 473 SYAEISTEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQDEAT---- 528 Query: 604 YSMEEMLQLGQHCSMAERR--ADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTGFGF 659 MAERR A RDV DWL F+ D+ G F I ++ G Sbjct: 529 ------------VQMAERRRLNRMAERDVGDWLYARFLSDKAGTDTRFAAEIIDISRGGM 576 Query: 660 FVRLDD----LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 VRL + FI + D + ++ GE+ Y++ D ++V + V M Sbjct: 577 RVRLVENGAVAFIPAPFLHAVRDELVCSQENGSVQIKGET---VYKVTDVIDVNIAEVRM 633 Query: 716 DERKI 720 + R I Sbjct: 634 ETRSI 638 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 174/677 (25%), Positives = 292/677 (43%), Gaps = 58/677 (8%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M RD L+ +Q + + V+GTV G G+GFL + + +++ MK +HG Sbjct: 1 MFRDNPLLSQLKQ--NMRQNTPSVEGTVKGTERGFGFLEADD-GESYFIAPPHMKKIMHG 57 Query: 122 DQVLAQ-PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 D++ A D+ +V K ++ + R V+ D ++ I Sbjct: 58 DRIKAYIETNGDKTSAEPDTLVEA---KLTRFIARISMTKNKLTVLADSPVINMPIRA-- 112 Query: 181 DQIMG-----ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 +++G G VV +L + ++ TG +A T Sbjct: 113 -KLVGLGKQKVNDGDWVVAQLKSHALKDGSFAAEV---------TGF---VATATDPNAP 159 Query: 236 IWPQAVEQQVAGLKEEVPEEAK----AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 W Q +A +P+ + R+DL D P TID +D DDA+ EK G Sbjct: 160 WWVTLARQDLAKDVPAMPDSVEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEG 219 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 ++ VAIAD + Y+ + L++ A R +VY P + IPM+P LS+ +CSL R Sbjct: 220 NLKVTVAIADPTSYIPADSELNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRP 279 Query: 352 CMVCEMTVSSKGRLT-GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 + C T+ G L ++F+ A ++S +L+YT+V + ++ + A L + L+ L Sbjct: 280 TLCCTYTIQEDGALAEEFEFFTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQLAEQLQSL 339 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 + + R+ + + + F + + I R A+++IEE M+ ANI+A Sbjct: 340 ATFARHRQQWRKNNAIVFPDQPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITA 399 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 AR + + +F H E I +L E G+E + Y EL ++A++ Sbjct: 400 ARLFRQNGDVGVFNTHAGFDPEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEKA 459 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 + L + L R +I HF + L YA +TSPIR+Y D+ HR IK L Sbjct: 460 NP-ALDSRLRRMQSYSIISASAERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLT--N 516 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE--ATRDVADWLKCDFMLDQVGN--V 646 G + TE +E++ M+ERR A RD++ WL D++ V + Sbjct: 517 GSAPSATE--------DEVIL------MSERRRQHRMAERDISSWLYVDYLTPAVESKQA 562 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD---QVGQRLMGESSGQTYRLG 703 F+ I V G VRL + + S L ++ + GQ + + Y LG Sbjct: 563 FEASIMDVNRGGLRVRLLENGAVAFIPASLLHDNKKEVKCLVETGQISIKDQV--EYSLG 620 Query: 704 DRVEVRVEAVNMDERKI 720 D + V + +N ++R I Sbjct: 621 DVIYVNIAEINKEKRNI 637 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 132/422 (31%), Positives = 210/422 (49%), Gaps = 30/422 (7%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAV------EQQ 244 +VV + P +G V +G+ ++ L H+IP+ + ++V E+ Sbjct: 407 IVVAIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEW 466 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 L E RVDLRDL + ++D D DDA++C++ + + V IADV++ Sbjct: 467 EPDLTEN---RGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTH 523 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 +VRP T +D EA RGT+VY + I MLP +LS+ LCSL + +R C T++S Sbjct: 524 FVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSAD 583 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + K++++++ S A LTY K I+ D +EQ + L L L KVL+ R Sbjct: 584 IQSVKYHKSLIKSKAALTYEKAQEII---DDPKEQ-NDVALGLRGLMKLSKVLNARRTGN 639 Query: 425 GGISFESEEAKFIFNAERRI-ERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPAL 482 G ++ S E +F + E R +++ + Q D H ++EE M+LANIS A + +E+ + AL Sbjct: 640 GALTLASSEVRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCAL 699 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA---EMLQTML 539 R H P E+ G E+ + + A+ L D+ + +L+ + Sbjct: 700 LRRHPVPLKESYKPLVEAARHRGFEIIVESG---KGLADSLNRCVDKKNPMLNRLLRMLT 756 Query: 540 LRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 R M QA+Y P+ + HFGLA Y HFTSPIRRY D+ +HR + + + Sbjct: 757 TRCMTQAVYFSAGTVPVPQYQ-HFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQ 815 Query: 593 QG 594 G Sbjct: 816 SG 817 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 158/534 (29%), Positives = 255/534 (47%), Gaps = 37/534 (6%) Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLK-EEVPEEAKAGRVDLRD 265 G + +G ++ L T+EIP+ + AV + + PEE K R+DLRD Sbjct: 349 GHYISTIGQAGNLQAESEVILMTNEIPHDAFSDAVLNCLPPKDFQPTPEEVKR-RMDLRD 407 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 + +ID D DDA++ + + V IADVS++VR T +D EAR+RGT+VY Sbjct: 408 RCVCSIDPPGCTDIDDALHYKDIDEETCEIGVHIADVSFFVREGTAIDLEARDRGTTVYL 467 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT-GYKFYEAVMSSHARLTYT 384 + I MLP +LS LCS+ ++RL ++ K T KF ++++ S A L+Y Sbjct: 468 VEKRIHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKKTAETIDVKFGKSIIKSRAALSYG 527 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 + I++ D E L K + L L K+++K R + G ++ S + F ++E Sbjct: 528 RAQEIVEDQNDQSE----LAKGIRGLLALSKIMNKKRMDDGALTLSSPQLHFTLDSETA- 582 Query: 445 ERI--EQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVL 501 E + E Q + + L+EE M+ ANI A+ + E K+ A+ R H+ P L Sbjct: 583 EPLSGELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQSAMLRRHESPIAARFDFLNRAL 642 Query: 502 AELGLEL-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRG 554 G++L P NK + E V D + +++ M R M+ A Y EN Sbjct: 643 KRFGVQLNPDTNKSLVETLDGVGEKVKDLDN--IVRIMTTRCMQFAKYFAAGTQSYENFR 700 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 H+GLA+ Y HFTSPIRRY DL +HR LA G+ T S M + + Sbjct: 701 HYGLAMPIYTHFTSPIRRYADLIVHRQ----LAAAIGYDKATDMLA----SKLMMQAVAE 752 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 + + + A +A R + + + G + +G + + F + L+ ++G VHV Sbjct: 753 NLNFRHKMAQDAGRSSSQLFIMEMLRRTPGKIEEGKVIKIKPTVFVILLEQYGVEGHVHV 812 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA--VNMDER-KIDFSLI 725 D + + +++ + L E G+ + D+V VRV +NM R ++D LI Sbjct: 813 ---DGEKWIYNETEESL--EKDGKRICIFDKVRVRVNVTPINMHGRSRLDLELI 861 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 148/558 (26%), Positives = 254/558 (45%), Gaps = 43/558 (7%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKE 250 +VV + P +G V LG ++ L H++P+ + ++ Q+ L Sbjct: 388 IVVAIDYWPRHSKYPIGHFVRALGGIGEKDTENEVILLEHDVPHGSFSAEIQSQLPKLPW 447 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 V E RVDLRD+ + ++D D DDA++ + G + V IADV+++++P T Sbjct: 448 TVDPEEYRKRVDLRDITICSVDPPGCTDIDDALHARRLDNGNIEVGVHIADVTHFIKPGT 507 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 PLD+EA R T+VY + I M+P+VLS+ LCSL +RL C + + KF Sbjct: 508 PLDKEAGLRATTVYLVDKRIDMVPDVLSSNLCSLRGGEERLAFSCIWELDDGANIINTKF 567 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 +++V+ S A LTY + I+ D Q + L L+ L K+L + R + G + Sbjct: 568 HKSVIKSKAALTYQEAQLII----DDPTQTNQTAQSLRLLNKLAKILKRRRIDNGALVLA 623 Query: 431 SEEAKFIFNAERRIERIEQTQRN--DAHKLIEECMILANIS-AARFVEKAKEPALFRIHD 487 S E +F ++E + I+ + D + ++EE M+LAN+S AA+ + E A+ R H Sbjct: 624 SPEIRFNIDSETH-DPIDVVAKKLLDTNSMVEEFMLLANVSVAAKIQSEFPECAMLRRHP 682 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML----LRSM 543 P + + G ++ + ++ A L+ +A +PD T+L R M Sbjct: 683 CPPDANFDPLKKAASYQGFQI---DTSCGKNLATSLD-LAVKPDNPYFNTLLRILATRCM 738 Query: 544 KQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 QA+Y + H+GLA Y HFTSPIRRY D+ +HR + + + + Sbjct: 739 MQAVYFISGTIQQQEYFHYGLASPIYTHFTSPIRRYADVIVHRLLAACIGADATYPALLD 798 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + QL + + R A A R F D+ + +G I V Sbjct: 799 KQASS--------QLCNNLNYRNRMAQYAGRASVALHTHLFFRDRTEDE-EGYILFVKKN 849 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGD---------RVEV 708 V + ++G ++V+ +N+ + D G + QT GD V + Sbjct: 850 AIQVIIPKYGLEGTIYVAGKNNEKLKKD--GPSFVYNEETQTQSCGDVEFHAFDPITVRL 907 Query: 709 RVEAVNMDERKIDFSLIS 726 +++ N+ +++ F L++ Sbjct: 908 SLDSTNVQHQRLVFELVT 925 >UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DHS2_THEEB Length = 754 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 187/703 (26%), Positives = 314/703 (44%), Gaps = 56/703 (7%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLSSEQMK 116 L A+ER G L+ R + Y L++ + G+ F EG +D+++ Q+ Sbjct: 42 LDALERIGLLIKERGK-YRRASDEGLIEARLRCSSKGFCFAIQDAEG-AEDIFVREHQLS 99 Query: 117 TCIHGDQVLAQPLGADRKGRR----EARIVRVLVPKTSQIVGRYFTEAGVGF-VVPDDSR 171 T +GD+VL + R+GRR E + +L ++ R + GF P D R Sbjct: 100 TAWNGDRVLVR---VTREGRRKKSPEGEVKLILERGNPSVIAR-VKQTEDGFRATPLDDR 155 Query: 172 LSFDILIPPDQI---MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 L F+I + P+ + + + +V V + + P G+I ++LG + + +D+ Sbjct: 156 LLFEIALEPNDLVPDLSTVVDQLVHVHIRRYPLGGYLPTGEIGQILGSDAQSAPILDLIC 215 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 H + + A+ A L ++ + R DLR+L +T+ ++ A + Sbjct: 216 CKHNLVRQFNPALRTAAATLNAQLETLDFSDRQDLRELVTITLVAP-GQEPQVAFSLDGL 274 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 W+L + I+DV + LDR AR +G S+ P +P+LP+ L L P Sbjct: 275 GPDLWQLGIHISDVGGLLPRDELLDRTARRQGMSLATPELSLPLLPQELET--LRLLPGG 332 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHL 407 DR + + +++ G + Y+ Y + + A +T +V L GD L Sbjct: 333 DRAAISLLIVLNTAGEVQSYRIYRSCIRVDACVTSEQVAATLALGDSS--------GDWL 384 Query: 408 EELHNLYKVLDKAREERGGISFESEEA-KFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 L +L + + R+ RG I EA + + E I + L+ ILA Sbjct: 385 RALIHLANAVSQRRQARGSIEVTPAEALRLAYADEGLAPAIFLPKVTPWTSLV----ILA 440 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE--PRDYAELLE 524 N R + K PAL+R P + F + L L L + + PRDY + Sbjct: 441 NELLGRHLAKLGVPALYRTQPVPELYGVQDFLKLCQNLNLPLSLDHPSQVTPRDYQRFMA 500 Query: 525 SVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIK 583 +A A +LQ +LL +K A P HFGLA + Y HF SP++RY D+ R + Sbjct: 501 QLATSDLAALLQELLLDKLKPASDSPVVLTHFGLATAEGYGHFCSPLQRYTDIVNQRILH 560 Query: 584 YLL----------AKEQGHQGNTTETGGYHYSM----------EEMLQLGQHCSMAERRA 623 LL AKE+ + G+++ ++++ + +L H ER+ Sbjct: 561 LLLTEGRDRRGPRAKERVNLGDSSCLEQVNWTVFTTDIQREVDTLVKELAPHLQERERQT 620 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 A +D+ + + +G V G+I+ V +GFFV L D ++GLVHVSSL +D+Y Sbjct: 621 YTAWKDLVGLQRVRQVQACIGEVRPGIITGVQSYGFFVELLDFNVEGLVHVSSLKDDWYE 680 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + Q L G + YRLGDRVEV ++ V+ +++D ++S Sbjct: 681 YRAHAQTLTGRRNRLRYRLGDRVEVLIKNVDSYRQQVDLGVMS 723 >UniRef50_D1YYD5 Exoribonuclease II n=10 Tax=cellular organisms RepID=D1YYD5_METPS Length = 498 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 134/426 (31%), Positives = 203/426 (47%), Gaps = 26/426 (6%) Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 +A A DLR+L +ID +D+ D D E G ++ VAIADV VR + +D Sbjct: 47 QADASTRDLRNLIWCSIDNDDSLDLDQLTVAEAMPTGAVKIRVAIADVDAVVRKRSAIDD 106 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 AR TSVY ++ PMLPE LS L SLN DRL +V EM ++ G L Y A+ Sbjct: 107 HARQNTTSVYTVAETFPMLPEKLSTDLTSLNYGSDRLAVVIEMVFAADGSLRSSDIYRAM 166 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAP---LVKHLEELHNLYKVLDKAREERGGISFES 431 + +HA+L Y V L+G + + L ++L + + L R + G + E+ Sbjct: 167 VRNHAKLAYNSVAGWLEGTGPMPQGLDAVDGLRENLRLQDRVAQTLKSIRYKHGALELET 226 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 EA+ +F E ++ + +++N A LI E MI AN AR+++ P L R+ KP Sbjct: 227 IEARPVFVGE-ELKGLVTSKQNRAQDLIAEFMIAANGVVARYLDSKNFPVLQRVVRKP-- 283 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR-----PDAEMLQTMLLRSMKQA 546 + + AE G LP P+ + + L + + PD + LL S + Sbjct: 284 KRWDRIVGLAAERGSWLP--RAPDSKALEQFLATAKAQDPLRFPDLSLSVIKLLGSGEYM 341 Query: 547 IYDP--ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 + P + GHFGLA++ YAH T+P RRYPDL R +K ++ G T Y Sbjct: 342 VQLPGEDGAGHFGLAVKDYAHSTAPNRRYPDLITQRLLKAAIS------GVTPP-----Y 390 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 +E+ L HC+ E A + R V + +VG F ++ T G +VR+ Sbjct: 391 DHDELEALAAHCTEEEDEATKVERQVRKSAAALLLRSRVGEQFDAFVTGATDHGTWVRIL 450 Query: 665 DLFIDG 670 D ++G Sbjct: 451 DPPVEG 456 >UniRef50_C4PZR2 Ribonuclease II-related n=3 Tax=Schistosoma mansoni RepID=C4PZR2_SCHMA Length = 1769 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 175/369 (47%), Gaps = 63/369 (17%) Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 ++P+ R D R ++TID +DA+DFDDA++ + G +++ + IADVSY+V P++ Sbjct: 1244 QIPKIEYERRRDFRSHCVITIDPKDAKDFDDALHITRLNNGLYQVGIHIADVSYFVYPNS 1303 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 PLD+ A +R TSVY +VIPMLP +LS LCSL P DRL +TV G + F Sbjct: 1304 PLDKRAADRTTSVYLVQKVIPMLPPILSQHLCSLVPNEDRLAFSILLTVKENGEIVDEWF 1363 Query: 371 YEAVMSSHARLTYTKVWHILQGDQD-------------LREQYAPL----VKH-LEELHN 412 +++ S RLTY + W I+Q Q L + AP ++H L LH Sbjct: 1364 GRSIIRSRCRLTYDEAWSIIQMTQSNPAIEDKSCLLEFLPKPEAPFTFEDLQHCLSSLHL 1423 Query: 413 LYKVLDKAREERGGISFESEEAKFIF--------------NAERRIERIEQTQRNDAHKL 458 + + L R E G +S E E F F + R + RN AH L Sbjct: 1424 IAQNLRSHRIENGAVSLEKLELNFNFPKPLSVMEKCTNECSTTRWPQGFSVKVRNPAHHL 1483 Query: 459 IEECMILANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR 517 IEE MI+AN S ARF+ + A R H KP + I+ L L + Sbjct: 1484 IEEWMIVANQSVARFLFGNFIKRATLRNHPKPEKKNISYDDHFLRMLSFD---------- 1533 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 +S+ + + ML H+GL++ Y HFTSPIRRY DL Sbjct: 1534 -----PQSILQQNNITMLNYT---------------WHYGLSIPLYTHFTSPIRRYADLM 1573 Query: 578 LHRAIKYLL 586 +HR I +L Sbjct: 1574 VHRQIARIL 1582 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 42/369 (11%) Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYC--------EKKRGGGWR-----LWVAIADVSYYV 306 R D R + TID ARD DDA++ EK G+R + V IADVSY+V Sbjct: 403 RKDFRKYCVFTIDPSTARDLDDALHIRQLEPSEIEKLESSGYRNAFYEVGVHIADVSYFV 462 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 +P++ +D+EA +R TS+Y +PMLP +L CSLNP D+L TV+ ++ Sbjct: 463 KPNSLVDKEAASRATSIYLVQLCVPMLPRLLCEEQCSLNPGEDKLAFSVVFTVTEDAKIL 522 Query: 367 GYKFYEAVMSSHARLTYTKVWHIL-QGDQD--------LREQYA--PLVKHLEELHNLYK 415 F + S +L+Y + D+D + E Y + +++ +L++L Sbjct: 523 TTWFGRTFIRSCCKLSYEDAQGFIDHPDRDWSSSGFVKVDEPYTIMDICQNVLKLNDLAT 582 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RF 473 + K+R G + + ++ F N E + I ++ LIEE M+ AN S A R Sbjct: 583 KMRKSRFHSGALRLDQVKSTFSLNNETGLPLGIAPYISKQSNWLIEEWMLAANKSVAERL 642 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAEL--LESVADRPD 531 + + A R H PS + +T S L G+ + + +D L LE + Sbjct: 643 AKYLPDSAFLRRHPSPSVKQLTEVSSSLNVAGININIDSAGSIQDKLPLKTLEH-----E 697 Query: 532 AEMLQT--MLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 A +L T +L ++M A+Y + H+ L +Q Y HFTSPIRRY D+ +HR + Sbjct: 698 ARLLVTVALLTKTMNLAVYFCLGLLPSELSPAHYALNMQLYTHFTSPIRRYADVIVHRQL 757 Query: 583 KYLLAKEQG 591 +LAKE+ Sbjct: 758 SAILAKEES 766 >UniRef50_Q65SI5 Exoribonuclease 2 n=36 Tax=Gammaproteobacteria RepID=RNB_MANSM Length = 659 Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 186/671 (27%), Positives = 295/671 (43%), Gaps = 63/671 (9%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA--QPLGADRKGRREARIV 142 V+G V G YGFL E K+ +++ MK +HGD++ A + +G ++ E I Sbjct: 22 VEGVVKGTDKAYGFLETE--KETFFIAPPAMKKVMHGDKIKAAIETIGDKKQAEPEELIE 79 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM--GFVVVVELTQRP 200 +L T I F + V+ D ++ I + + + G VV L P Sbjct: 80 PML---TRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQAKTVKQELKEGDWVVATLKTHP 136 Query: 201 TRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 R + +I E + + L HE +P ++ + L E Sbjct: 137 LRDDRFFYAQIAEFICSAEDEFAPWWVTLARHEQSR-YPVQGQEVYSMLDTET------- 188 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCE-----KKRGGGWRLWVAIADVSYYVRPSTPLDR 314 R DL L VTID E+ +D DDA+Y E GW+L VAIAD + Y+ + +++ Sbjct: 189 RRDLTALHFVTIDSENTQDMDDALYIEPVTAPNDEQTGWKLAVAIADPTAYIALDSQIEK 248 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY-KFYEA 373 +AR R + Y P IPMLP LS+ LCSL R +VC + +G + G +F A Sbjct: 249 DARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEIVGEPEFILA 308 Query: 374 VMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 + S A+L Y V L Q + + + + + LH V R++ G + E Sbjct: 309 QVQSKAKLAYNNVSDYLEQVENAWQPENESTQQQINWLHQFALVRINWRKKHGLLFKEKP 368 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH---DKP 489 + F+ + I+ R A++++EE MI+ANI A ++ K + +F H DK Sbjct: 369 DYSFVLADNGHVREIKAEYRRIANQIVEESMIIANICCAHYLAKNAQTGIFNTHVGFDKK 428 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVAD----RPDAE-----MLQTMLL 540 +F ++A L E E R E L ++A R D E L+ L Sbjct: 429 FLPNAHNF--LMANLSNEENQQELAE-RYSVENLATLAGYCRMRHDIEPIEGDYLEFRLR 485 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R + A + E HFGL L YA +TSPIR+Y D+ HR IK LA + + Sbjct: 486 RFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKP------ 539 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--FKGVISSVTGFG 658 S E + +L + A ++ RD+ADWL C ++ D+V + F+ + G Sbjct: 540 ----SDETLARLQE----ARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGG 591 Query: 659 FFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 V+L + V SS+ D D++ + GE + Y++GD V +R+ V Sbjct: 592 LRVQLLENGASVFVPASSIHPNKDEIQVNTDELALYINGE---RRYKIGDIVNIRLTEVK 648 Query: 715 MDERKIDFSLI 725 + R + +L+ Sbjct: 649 EETRSLIGNLV 659 >UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_VIBC3 Length = 678 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 177/669 (26%), Positives = 290/669 (43%), Gaps = 68/669 (10%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 E L +GT+ G+GFL V+ K ++ MK C+HGD+V+A R A Sbjct: 17 ETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHGDKVVA--FIRTENEREVA 73 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA-----RMGFVVVV 194 ++ ++ +GR G V PD +L + + G + G VV Sbjct: 74 EPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAKTKKGLNEADFQEGDWVVA 132 Query: 195 ELTQRPTRRTKAVG-KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 L + P + +I + D + L +++P P ++ ++ Sbjct: 133 HLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDW------QLK 186 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 ++A R DL LP VTIDGE +D DDA+Y ++ G + L +AIAD + Y+ P +D Sbjct: 187 DDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMD 246 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKFYE 372 + AR RG ++Y P + IPMLP L++ LCSL R + C +T+ G + +F+ Sbjct: 247 KVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFA 306 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE---ERGGISF 429 A + SHARL Y V L+ EQ+ P + + + +LY +AR E + F Sbjct: 307 ANIKSHARLVYDHVSDWLETGS--SEQWQPSEEIAQVVRDLY-AFSQARANWCETHAVVF 363 Query: 430 -ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 + + +F +A+ + I R A++L+EE MI ANI A + ++ +F H Sbjct: 364 PDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAG 423 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVAD---------RPDAEMLQTML 539 E + ++A G P AE L +V + L + Sbjct: 424 FKAEKMADVVELMAVNG---------APNADAETLATVEGFAALRRWLATQETSYLDNRI 474 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK-YLLAKEQGHQGNTTE 598 + + + HF + L YA +TSPIR+Y D+ HR +K ++L K + T Sbjct: 475 RKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDET- 533 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTG 656 +G+ ++ + A R+VADWL + D+ F+ I + Sbjct: 534 -------------VGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINR 580 Query: 657 FGFFVRLDD----LFIDGLVHVSSLDNDYYRFDQVGQR-LMGESSGQTYRLGDRVEVRVE 711 G VRL + FI G + LDN R + G+ + Y+LGD +E+ + Sbjct: 581 PGMRVRLLENGAMAFIPGAL---ILDNK-ERIECNGEDGTILIDKEVVYKLGDVLEIVLT 636 Query: 712 AVNMDERKI 720 VN + R + Sbjct: 637 EVNQENRSL 645 >UniRef50_C1MNB1 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MNB1_9CHLO Length = 494 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 185/371 (49%), Gaps = 13/371 (3%) Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V + +G + EVP E +A R D + + +ID ARD DDA++ + G + V IA Sbjct: 60 VPDRASGERWEVPSEERATRRDFTKVRVASIDPPTARDLDDALHATMRDDGVLVVGVHIA 119 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS++V P++ LD+EA R TS YF +V+PMLP +L + LCSLNP V+RL E ++ Sbjct: 120 DVSHFVTPNSALDKEAGRRATSTYFVQKVMPMLPRLLCDDLCSLNPGVERLTFSVEWEMT 179 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP--LVKHLEELHNLYKVLD 418 G + F V+ S A+L Y + D + + P + + + L + + Sbjct: 180 PDGVVLSEWFGRGVIRSCAKLDYGTAQSVAAADANDPGAWDPRAVAETIGLLSRAARGMR 239 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA- 477 R + G + + + F +A + +A++L+EE M+LAN + A F+ A Sbjct: 240 ARRFQNGALRLDQSKLSFELDAAGQPSSAAAYVTREANQLVEEFMLLANTTVATFIASAY 299 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD----AE 533 + AL R H +P + + AE GL + + + L A PD A+ Sbjct: 300 PDRALLRCHPEPDERKVKQLETFAAERGLRVDASSSGAL--HRSLTALRASNPDGYEVAK 357 Query: 534 MLQTM---LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL-AKE 589 +L T+ L R D E GH+ LA + Y HFTSPIRRYPD+ +HR + L A Sbjct: 358 LLATLPMQLARYFCTGKQDEETWGHYALAFERYTHFTSPIRRYPDVVVHRIVAAALDAGF 417 Query: 590 QGHQGNTTETG 600 +G + N ++ G Sbjct: 418 KGRRANRSDDG 428 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 121/407 (29%), Positives = 195/407 (47%), Gaps = 27/407 (6%) Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKE 250 ++V + P G V LG ++ L H++P+ + + V + L Sbjct: 407 IIVTIDTWPRNSRYPQGHFVRSLGPLGDMATENEVILLEHDVPHCKFSEKVLSFLPKLPW 466 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + E A RVDLR+L + ++D D DDA++C + G + + V IADVS+++RP Sbjct: 467 SITAEDYAKRVDLRELDICSVDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGN 526 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA RGT+VY + I M+PE+LS+ LCSL V+R C V + + +F Sbjct: 527 ALDKEAAARGTTVYLVGKRIDMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDKRF 586 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 +++V+ S +TY + ++ D Q + + K L L+ L K+L K R + G + Sbjct: 587 HKSVIKSKRAMTYEEAQVLI----DDATQQSEIAKSLRHLNRLAKILKKRRMDNGALVLA 642 Query: 431 SEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDK 488 S E +F ++E +E Q + + ++EE M+LANI+ A + + E A+ R H K Sbjct: 643 SPEIRFQVDSETHEPLEVEAKQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPK 702 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAE-------MLQTMLLR 541 P G ++ + +L D+ E M++ + R Sbjct: 703 PPPTNFDPLVKAARYQGFQVDT-------ETGLVLSHSLDKCVKEDNPYFNTMIRILTTR 755 Query: 542 SMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 M QA+Y E H+GLA Y HFTSPIRRY D+ +HR + Sbjct: 756 CMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRLL 802 >UniRef50_Q0WPN0 Putative 3'-5' exoribonuclease n=2 Tax=Arabidopsis thaliana RepID=Q0WPN0_ARATH Length = 1055 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 180/355 (50%), Gaps = 29/355 (8%) Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 EVPEE R DLRDL ++TID A D DDA+ + GG +R+ V IADVSY+V P T Sbjct: 467 EVPEEEVQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPET 526 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD EAR R TSVY + I MLP +LS + SL+P DRL ++ +G + Sbjct: 527 ALDTEARFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWI 586 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAP----------LVKHLEELHNLYKVLDKA 420 ++ S +L+Y I+ G D+ E P + + +++L + L + Sbjct: 587 GRTIIRSCCKLSYDHAQDIIDGKSDVAENGWPALHGSFKWCDVTRSVKQLSEISTTLRQK 646 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KE 479 R G + E+ + F+F+ R ++ L+EE M+LAN++AA + +A + Sbjct: 647 RFRNGALQLENSKPVFLFDEHGVPYDFVTCSRKGSNFLVEEFMLLANMTAAEVISQAYRA 706 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELP--------------GGNKPEPRDYAELLES 525 +L R H +P+T + F ++ G++L GN + + ++L + Sbjct: 707 SSLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGNLKDDSVFVDILNN 766 Query: 526 VADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 A +P ++ ++K ++ + GH+ LA+ Y HFTSP+RRYPD+ +HR Sbjct: 767 YAIKP-MQLASYFCTGNLKDSVAE---WGHYALAVPLYTHFTSPLRRYPDIVVHR 817 >UniRef50_D0A826 Exosome complex exonuclease RRP44, putative n=4 Tax=Trypanosoma RepID=D0A826_TRYBG Length = 943 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 136/442 (30%), Positives = 201/442 (45%), Gaps = 72/442 (16%) Query: 254 EEAKAGRVDLRDLPLV-TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 E + GR DLR V +ID ARD DDA+ GG+R+ V IADVS++V P + L Sbjct: 346 EMKRTGRRDLRREEFVCSIDPATARDLDDALSI-TLLPGGYRVGVHIADVSHFVSPGSAL 404 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D E R R TSVY +V PMLP LS CSL+P D+L + G+L G F + Sbjct: 405 DEEGRARATSVYLVDRVYPMLPRKLSEEYCSLHPGSDKLAFSAIFQLDLNGKLKGEWFGK 464 Query: 373 AVMSSHARLTYTKVWHILQGD------------------QDLREQYAPLVKHLEELHNLY 414 +V+ + RL+Y I+ G+ L+E+ A VKH L +L Sbjct: 465 SVIRNRCRLSYDDAQRIIDGNLTTLDALDYGGVTDRRELSQLKERVATSVKH---LFDLA 521 Query: 415 KVLDKAREERGGISFESEEAKFI------------FNAERRIERIEQTQRNDAHKLIEEC 462 L A ERG ++F + E F FN R+IE A+ L+EE Sbjct: 522 SKLRAASFERGRLAFSTPEIGFHFEDISNPTHPIGFNVHRQIE---------ANWLVEEF 572 Query: 463 MILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAE 521 M+LAN+ A + V+ + A+ R+H P + LA + +EL G + + + Sbjct: 573 MLLANLRVAQKIVQYLPDQAILRVHPPPKRVPFEQLKVSLARVNIELKGRSN---KSLEQ 629 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIY--DPEN------RGHFGLALQSYAHFTSPIRRY 573 LL SV D P + + M+ ++ A Y + EN GH+ L L+ Y HFTSPIRRY Sbjct: 630 LLNSVRDHPLRDEISIMVKNTLSLAKYCTNGENFTNKVPLGHYALGLEWYTHFTSPIRRY 689 Query: 574 PDLTLHRAIKYLLAKEQ----------------GHQGNTTETGGYHYSMEEMLQLGQHCS 617 D+ +HR + L E G + ++ + S E++ + C+ Sbjct: 690 ADIIVHRQLLCALEIESIVKGKHRTGKTCAGAVGMEVECLDSAEFFTSTYEVMNIADECN 749 Query: 618 MAERRADEATRDVADWLKCDFM 639 +R AD + C ++ Sbjct: 750 ENKRAADSVSEASLKLFFCHYL 771 >UniRef50_A8PEK1 RNB-like protein n=5 Tax=Brugia malayi RepID=A8PEK1_BRUMA Length = 854 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 146/510 (28%), Positives = 239/510 (46%), Gaps = 63/510 (12%) Query: 167 PDDSRLSFDILIPPDQIMGARMG-------FVVVVELTQRPTRRTKAVGKIVEVLG---- 215 P DSR+ ++IP +Q A F+ V + + A GK+ + LG Sbjct: 353 PGDSRMP-RMMIPAEQTPAAFFDRPQDFAKFIYVARMVEWQATAQFARGKLYKSLGLAGD 411 Query: 216 ---DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 + G +A D+ R + + + V + ++ E+ R D RD + TID Sbjct: 412 IEAETEGLLLANDVDTREFSQAALSSLPITEAV---EWKIDEKEFKYRKDFRDETVFTID 468 Query: 273 GEDARDFDDAVY------CEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 ARD DDA++ C+ GW + V IADVS++V+ T LD A NRGTSVY Sbjct: 469 PVTARDLDDALHIKPIANCDGAGNPGWEVGVHIADVSHFVQFGTELDHWAFNRGTSVYLV 528 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 +VIPMLP++L LCSLNP VDRL ++ +G + F ++ S +L+Y Sbjct: 529 HKVIPMLPQMLCEELCSLNPDVDRLTFSVVWKINDQGEIFDEWFGRTIIRSCCKLSYEHA 588 Query: 387 W-HILQGDQDLREQYAPLV----------KHLEELHNLYKVLDKAREERGGISFESEEAK 435 I+ ++D P + + + L+ + +L K R E G I+FE + Sbjct: 589 QDFIVHPEKDFVSSELPKIFNGKKSDEVKEAVLRLNKIAVILRKKRFENGSINFEMPKLN 648 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAI 494 F + + +A+ L+EE M+LAN++ AR +E + + AL R H P + + Sbjct: 649 FTLDETSGMPN-GLCLSEEANFLVEEFMLLANMAVARKIELSFPKTALLRRHPPPKIKML 707 Query: 495 TSFRSVLAELGLELPGGNKPEPRDYAELLESVAD----RPDAEMLQTMLLRSMKQAIY-- 548 ++G E+ G + + LL+ + R +ML +L++SM+ A+Y Sbjct: 708 RDILEKCEKVGFEIDGSSSATIA--SSLLKYEGNNELKRTVVQMLTYLLMKSMQLALYFC 765 Query: 549 --DPENR---GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 +NR H+ L++ Y HFTSPIRRYPD+ +HR + L G + G Sbjct: 766 VGSLKNRADYAHYALSVPFYTHFTSPIRRYPDIMVHRFLSAAL-------GYSPAPG--- 815 Query: 604 YSMEEMLQLGQHCS---MAERRADEATRDV 630 +++E+ + HC+ + + EA+ D+ Sbjct: 816 LTVKEVETIASHCNDRKLTAKTVSEASDDM 845 >UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D29A Length = 829 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 140/477 (29%), Positives = 217/477 (45%), Gaps = 57/477 (11%) Query: 191 VVVVELTQRPTRRTKAVGKIVEVLG---------DNMGTGMAVDIALRTHEIPYIWPQAV 241 + + +TQ P A G++ + LG + + T VD + T E+ PQ Sbjct: 264 LFICRITQWPADSNFAEGRLAKTLGQAGEIEPETEGILTEYGVDFSEFTEEVLNCLPQ-- 321 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 L +P + R DLR + TID ARD DDA+ C++ G + + V IAD Sbjct: 322 -----DLPWSIPAHELSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGVHIAD 376 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSY+V+ LD A R TSVY +VIPMLP +L LCSLNP DRL +S Sbjct: 377 VSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIWKLSP 436 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAP----------LVKHLEEL 410 +G++ F V+ S +L+Y ++ D+ + P + + + L Sbjct: 437 EGKILSEWFGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEAVLNL 496 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANIS 469 HN+ K L R E G + + + F + E + + Q D++KL+EE M+LAN++ Sbjct: 497 HNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLANMA 556 Query: 470 AARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAELL---E 524 + ++ E AL R H P T+ + + ++GL++ + R E L E Sbjct: 557 VGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENLGDDE 616 Query: 525 SVADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLT 577 A R E++ M R M+ A+Y D + H+ L + Y HFTSPIRRY D+ Sbjct: 617 YTAAR--KEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADVI 674 Query: 578 LHRAIKYLLAKEQGHQGNTTETGG-YHYSMEEMLQLGQHCS---MAERRADEATRDV 630 +HR + G + G S EE+ Q HC+ A +R E + ++ Sbjct: 675 VHRLL-----------GASLNCGPRLSVSGEEVHQQASHCNDRKTASKRVQELSSEL 720 >UniRef50_UPI00016C3D4C ribonuclease R n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D4C Length = 335 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 410 LHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS 469 + +L +L K R +RG + EA ++A+ R+ + N +H+++EE M+ AN + Sbjct: 5 MRDLALLLRKKRFKRGALELTMPEAVLEYDADGRVSGAHFAEHNLSHQIVEEFMLAANEA 64 Query: 470 AARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAELLESVAD 528 A + L R+H P+ + + +F A LG + +P+ R + +L++ AD Sbjct: 65 VAEHFTAHEVSFLRRVHPAPNEDKLEAFAQFAAILGHPI---KRPQDRYELQRVLDATAD 121 Query: 529 RPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAK 588 +P+ LLRS KQA Y P H+ LA Y HFTSPIRRYPDL +HR LL K Sbjct: 122 KPERAAFHFALLRSFKQATYSPVQDEHYALASHHYCHFTSPIRRYPDLQVHR----LLDK 177 Query: 589 EQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFK 648 TG + EE+ LG+HCS ERRA+ A R++ ++ ++G Sbjct: 178 -------WVRTGSASANTEELAALGEHCSKMERRAETAERELVKTRILSYLSGRLGEQLD 230 Query: 649 GVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 VI+ V +GFF + + +GLVH+SSL +DYY FD+ L G + + +RLGDRV V Sbjct: 231 AVITGVADYGFFAQAERFPAEGLVHISSLVDDYYWFDESAHSLEGRRTQRRFRLGDRVRV 290 Query: 709 RVEAVNMDERKIDFSL 724 V V++ R +D L Sbjct: 291 VVARVDLPRRMLDLRL 306 >UniRef50_A9UUB7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UUB7_MONBE Length = 583 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/422 (30%), Positives = 203/422 (48%), Gaps = 34/422 (8%) Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLK 249 +V+V + + A G VLG L ++IP+ + V + + + Sbjct: 81 LVIVSFEEWTAKSRFARGSFKRVLGQAGTIDAETQAILMEYKIPFEDFKPHVLKCLPKVD 140 Query: 250 EE----VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYY 305 E+ +P++ A R DLRD+ + TID ARD DDA++C + G + + V IADVSY+ Sbjct: 141 EKHPFVIPDDEIAKRRDLRDVRIFTIDPSTARDLDDALHCTQLPDGNFEMGVHIADVSYF 200 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V P+TPLD EA R TS Y V PMLP +L GLCSLNP DRL + +G Sbjct: 201 VEPNTPLDEEAEFRATSTYLVQSVYPMLPRLLCEGLCSLNPDEDRLAFSVIWVLDPEGNR 260 Query: 366 TGYKFYEAVMSSHARLTY----------TKVWHILQGDQ-DLREQYAPLVKHLEELHNLY 414 F V+ S +L Y +K W+ ++ + Q A + + ++++ Sbjct: 261 KSTWFGRTVIRSRCKLAYDHAQLFIDDESKEWNDVEFPRLSADTQGADVKADVLRMNHIA 320 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARF 473 + + R G + + F + +E QR A++L+EE M+LANIS A Sbjct: 321 QQMRDRRFANGALRLNKTKLSFRLGEDMLPVETWPYVQRA-ANQLVEEFMLLANISVAEC 379 Query: 474 VEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL----ESVAD 528 + KA + AL R H +P T + + +G+ L G+ D A + E+ D Sbjct: 380 IAKAFPQCALLRRHPEPFTSRLEEVAARFQRVGIPLDTGSS---GDIAASIRAYQENEQD 436 Query: 529 RPDAEMLQTMLLRSMKQAIY--------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 + E++Q +L +M+QA+Y + + H+ LA Y HFTSPIRRY D+ +HR Sbjct: 437 QGRVEVMQLLLTMAMQQAVYFSTGDSKLEQSDWKHYALATPMYTHFTSPIRRYADVVVHR 496 Query: 581 AI 582 + Sbjct: 497 LL 498 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 1117 0.0 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 926 0.0 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 926 0.0 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 908 0.0 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 890 0.0 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 860 0.0 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 833 0.0 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 831 0.0 UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 830 0.0 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 825 0.0 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 816 0.0 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 811 0.0 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 810 0.0 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 809 0.0 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 798 0.0 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 798 0.0 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 793 0.0 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 790 0.0 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 787 0.0 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 780 0.0 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 779 0.0 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 776 0.0 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 775 0.0 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 775 0.0 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 774 0.0 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 773 0.0 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 766 0.0 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 760 0.0 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 753 0.0 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 752 0.0 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 751 0.0 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 746 0.0 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 741 0.0 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 738 0.0 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 737 0.0 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 736 0.0 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 735 0.0 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 733 0.0 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 729 0.0 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 727 0.0 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 726 0.0 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 722 0.0 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 721 0.0 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 720 0.0 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 719 0.0 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 718 0.0 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 717 0.0 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 717 0.0 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 715 0.0 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 714 0.0 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 711 0.0 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 709 0.0 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 709 0.0 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 709 0.0 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 708 0.0 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 707 0.0 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 707 0.0 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 703 0.0 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 701 0.0 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 701 0.0 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 697 0.0 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 692 0.0 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 690 0.0 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 690 0.0 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 690 0.0 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 690 0.0 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 690 0.0 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 689 0.0 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 689 0.0 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 686 0.0 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 686 0.0 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 683 0.0 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 682 0.0 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 681 0.0 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 680 0.0 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 680 0.0 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 679 0.0 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 677 0.0 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 677 0.0 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 676 0.0 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 675 0.0 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 670 0.0 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 669 0.0 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 667 0.0 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 664 0.0 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 663 0.0 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 662 0.0 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 661 0.0 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 659 0.0 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 657 0.0 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 657 0.0 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 657 0.0 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 657 0.0 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 657 0.0 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 656 0.0 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 655 0.0 UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfurica... 654 0.0 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 653 0.0 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 648 0.0 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 647 0.0 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 646 0.0 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 644 0.0 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 643 0.0 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 642 0.0 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 640 0.0 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 637 0.0 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 637 0.0 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 637 0.0 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 636 0.0 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 636 e-180 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 634 e-180 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 633 e-180 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 627 e-178 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 627 e-178 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 624 e-177 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 623 e-177 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 620 e-175 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 617 e-175 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 617 e-175 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 615 e-174 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 609 e-172 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 609 e-172 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 608 e-172 UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases ... 606 e-171 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 605 e-171 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 602 e-170 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 600 e-170 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 600 e-170 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 600 e-169 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 598 e-169 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 598 e-169 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 587 e-166 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 585 e-165 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 584 e-165 UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n... 583 e-165 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 582 e-164 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 579 e-163 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 578 e-163 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 577 e-163 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 576 e-162 UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica Re... 576 e-162 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 574 e-162 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 574 e-162 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 571 e-161 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 571 e-161 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 571 e-161 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 569 e-160 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 569 e-160 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 569 e-160 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 568 e-160 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 564 e-159 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 564 e-159 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 563 e-159 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 563 e-158 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 559 e-157 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 559 e-157 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 556 e-156 UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organ... 554 e-156 UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam ... 553 e-155 UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collins... 552 e-155 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 549 e-154 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 548 e-154 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 546 e-153 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 543 e-152 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 541 e-152 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 541 e-152 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 540 e-151 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 538 e-151 UniRef50_Q46363 Acetazolamide conferring resistance protein zam ... 534 e-150 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 534 e-150 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 533 e-150 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 529 e-148 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 528 e-148 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 518 e-145 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 514 e-144 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 512 e-143 UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n... 511 e-143 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 509 e-142 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 507 e-142 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 506 e-141 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 505 e-141 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 505 e-141 UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteoba... 505 e-141 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 504 e-141 UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera ara... 502 e-140 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 499 e-139 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 496 e-138 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 494 e-138 UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 493 e-137 UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Z... 492 e-137 UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilag... 490 e-136 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 488 e-136 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 487 e-136 UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, s... 486 e-135 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 485 e-135 UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 ... 484 e-135 UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 ... 483 e-134 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 481 e-134 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 477 e-133 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 477 e-132 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 476 e-132 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 475 e-132 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 474 e-132 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 474 e-132 UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole geno... 473 e-131 UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyos... 469 e-130 UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 ... 467 e-130 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 466 e-129 UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agarica... 465 e-129 UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9... 464 e-129 UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 ... 464 e-129 UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babes... 459 e-127 UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina R... 457 e-127 UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria R... 457 e-127 UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ... 457 e-126 UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegle... 456 e-126 UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria R... 456 e-126 UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic contro... 456 e-126 UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria Rep... 455 e-126 UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomyc... 453 e-125 UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, pu... 452 e-125 UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariop... 452 e-125 UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 ... 452 e-125 UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis ME... 451 e-125 UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosac... 451 e-125 UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomy... 450 e-124 UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clu... 450 e-124 UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria R... 450 e-124 UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic contro... 449 e-124 UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosacch... 449 e-124 UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomati... 449 e-124 UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia R... 448 e-124 UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage ... 448 e-124 UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=... 447 e-124 UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosacch... 447 e-124 UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q... 447 e-123 UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1... 446 e-123 UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 994... 446 e-123 UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 ... 444 e-123 UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepI... 442 e-122 UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostell... 441 e-122 UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis A... 441 e-122 UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n... 441 e-122 UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_V... 440 e-121 UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial ... 438 e-121 UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccha... 437 e-121 UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_... 437 e-121 UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID... 436 e-120 UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35... 436 e-120 UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria Rep... 436 e-120 Sequences not found previously or not previously below threshold: >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 1117 bits (2889), Expect = 0.0, Method: Composition-based stats. Identities = 811/813 (99%), Positives = 811/813 (99%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR Sbjct: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH Sbjct: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVRP TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA Sbjct: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR QVGKKVNFEPDSAFRGEKKTKPKAA Sbjct: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPDSAFRGEKKTKPKAA 780 Query: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE Sbjct: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 501/775 (64%), Positives = 602/775 (77%), Gaps = 1/775 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 ++QDP +RE EKY NPIPSREFIL + P +RDE+ L I E+Q+E +RRRLR Sbjct: 9 INQDPHYKRELEKYGNPIPSREFILTVIRDNNAPMNRDEILTALSIRNEDQIEAMRRRLR 68 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AME DGQLVFT+R+ YALPE+LDL KGTVIGHR+G+GFL+V+G+KDDL++ + QM+ +H Sbjct: 69 AMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMH 128 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD VLAQP G DR+GRRE RIVRVL + QIVGR+F E G G+VVPDDSR+ DIL+P Sbjct: 129 GDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + GARMG VVVVEL +R + +G I E+LGDNM GM V+IALR H+I + +P A Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSA 248 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VE+ V EEV EEAK GRVDLR+LPLVTIDGEDARDFDDAVYCEK G W+LWVAIA Sbjct: 249 VEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVR + LD EA NRG SVYFP++V+PMLPE+LSNGLCSLNPQVDRLCMVCEM +S Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +KG+LT Y+FYEAVM+SHARLTYTKV +L+GD++LR +Y+ LV HLEEL+ LY+ L A Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +RG I FE+ E KFIFNA RIERIE RNDA K+IEECM LANI+AA F+EK KEP Sbjct: 428 RHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKEP 487 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+RIH PS E +TSFR+ L+E GL L GG KP +DYA LLE V +RPD E++QTMLL Sbjct: 488 ALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTMLL 547 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y +N GHFGLAL+ YAHFTSPIRRYPDLTLHR IKYLLAKEQG + TT+TG Sbjct: 548 RSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTG 607 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYS +EM LG HCSM ERRAD+ATR+VADWLKC++M D VG F GVISSVTGFG F Sbjct: 608 GYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGLF 667 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVH+S+L+NDYY+FD QRL+GE+SG YRLGD+V ++VEAV+++ + + Sbjct: 668 VRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKMV 727 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKT 775 DFSLI SER PR GKTA+EKAKK ++ V + S K+ Sbjct: 728 DFSLIGSERKPRRAGKTAKEKAKKVFKELPSKASKKRKSAVKKKDVSKKTSRKRK 782 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 926 bits (2393), Expect = 0.0, Method: Composition-based stats. Identities = 509/816 (62%), Positives = 624/816 (76%), Gaps = 7/816 (0%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 DPF +REA+ Y NPIPSRE+ILE LT+ P +R++L L +EGEEQ EGLRRRLRA Sbjct: 6 HLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRA 65 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTC 118 MERDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG ++ D+ L QM+T Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 IHGD VL QP G D++GR+E R+VR+L + QIVGR+F E G +VVPDDSR+ DILI Sbjct: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 P D GARMG VVV+E+T R TR +GK+VEVLG+NM GM IA+RTH+IP+ WP Sbjct: 186 PNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP 245 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 VEQQVAGL EEVPEEAK GRVDLR LPLVTIDGEDARDFDDAVYCE K+GGGWRLWVA Sbjct: 246 AEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVA 305 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVSYYVRP T LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEMT Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 VS G+L+GYK YEAVM+SHARLTYTKV IL+GD++LRE+Y LV HLEELH +Y+VL Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 AR+ERG I FE+ E KFIFNA+R+IE IE RNDAHKLIEECMILANI++A VEKAK Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAK 485 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 E AL+R+H+ P E +T FR L ELGL+L GG +P P DYA L++ + +RPD E++QTM Sbjct: 486 EAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTM 545 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT-T 597 LLRSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AK++G + T Sbjct: 546 LLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWT 605 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 TGGYHYS ++M G+ CSM ERRAD+ATR+V+DWLKC++M D VG +GV+++VT F Sbjct: 606 PTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSF 665 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 GFFVRL +L IDGLVH+S+L NDYY +D +GQRL+GES G YRLGD V+V+V AVN+D+ Sbjct: 666 GFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDD 725 Query: 718 RKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKP 777 R+IDF L+ + R R GKTA+++A + A +G ++ S + E K + Sbjct: 726 RQIDFELVETSRKLRGQGKTAKKRADEARAKAQG---KKEAATKGACGKSPTKSELKPQV 782 Query: 778 KAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 +A ++ + + KT+ R KV + Sbjct: 783 EATRRPDSEGRSKPKKTKAPKKRKDQARKKSGKVRD 818 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 506/801 (63%), Positives = 612/801 (76%), Gaps = 5/801 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DPF +RE++ Y NPIPSREFILE L + P +R++L L + GEEQ EGLRRRLR Sbjct: 5 IPNDPFADRESQNYENPIPSREFILEFLEQAGVPMNRNDLFEALKLAGEEQYEGLRRRLR 64 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKT 117 AMERDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG + DD+ L QMK Sbjct: 65 AMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKN 124 Query: 118 CIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDIL 177 IHGD VL QP ++GRRE R+VRVL + SQIVGR+F E G +VVPDDSR+S DIL Sbjct: 125 IIHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDIL 184 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 IP + GARMG VVV+E+T R +R +GK+VEVLG+NM GM IA+RTH+IPY W Sbjct: 185 IPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEW 244 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 P+AVE+Q+ L EEVPEEAK GRVDLR+LPLVTIDGEDARDFDDAV+CEKK+ GGWRLWV Sbjct: 245 PEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWV 304 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVSYYVRP + LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEM Sbjct: 305 AIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEM 364 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 T+S G+L+ YK YEAVM+SHARLTY+KV IL+GD++LRE+Y PLV HLEELH +YKVL Sbjct: 365 TISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 +AR++RG I FE+ E KFIFNAER+IE IE RNDAHK+IEECMILANI++A VEKA Sbjct: 425 KEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVEKA 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 KEPAL+RIH+ P + FR L+ELGLEL GG +P P DYA+L +A R D E++QT Sbjct: 485 KEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQT 544 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT- 596 MLLRSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AKE+G + Sbjct: 545 MLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRW 604 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 T TGGYHYS ++M G+ CSM ERRAD+ATR+VADWLKC++M D VG+ +GVI++VT Sbjct: 605 TPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTS 664 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 FGFFVRL DL IDGLVH+S+L NDYY+FD +GQRL+GES G YRLGD V+V+V AVN+D Sbjct: 665 FGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNLD 724 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEP-DSAFRGEKKT 775 +++IDF L+ + R R GKTA+++A + K KR A + T Sbjct: 725 DKQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATRSSSKESATARAVPAIEPT 784 Query: 776 KPKAAKKDARKAKKPSAKTQK 796 K RK K P Sbjct: 785 KRPEQTDSGRKRKGPKRGDDD 805 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 422/824 (51%), Positives = 557/824 (67%), Gaps = 28/824 (3%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DP REAEKY NPIPSRE IL+HL +R PA+R+EL E +E +E +E LRRRLRA Sbjct: 6 SLDPEAAREAEKYENPIPSRELILQHLGERGSPAAREELVEEFGLESDEDIEALRRRLRA 65 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 MERDGQL++TRR YA ++LDLV G V GHRDG+GFL + DDL+LS QM+ G Sbjct: 66 MERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDG 125 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+ LA+ G DR+GRRE IV V+ IVGRY E+ VGFVVPD+ ++ ++L+ P Sbjct: 126 DRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPG 185 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + + A+ G V V++T PT+R + G IVEV+G+ M GM +D+ALR+ +IP++WP+AV Sbjct: 186 RALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHVWPEAV 245 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG-----GGWRLW 296 ++ A LK EV E+ K RVDLR LP VTIDGEDARDFDDAVYCEK G GG+RL+ Sbjct: 246 LKEAARLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLY 305 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADVS+YV+ + LD+EA RG SVYFP +V+PMLPE LSNGLCSLNP VDRL MVCE Sbjct: 306 VAIADVSHYVKVDSALDKEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCE 365 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-----LREQYAPLVKHLEELH 411 +T+S G++T Y+FYEAV+ SHARLTY KV +L+ + L +YA ++ HL++L+ Sbjct: 366 ITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHLKQLY 425 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 +LYKVL KAR RG I FE++E + +F A+R+I I+ T+RNDAHKLIEECM+ AN++ A Sbjct: 426 SLYKVLLKARHTRGAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCANVATA 485 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL-PGGNKPEPRDYAELLESVADRP 530 F++K + PAL+R+HD P E R+ L ELGL L G P P+DY LLE + RP Sbjct: 486 AFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKIQGRP 545 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 D ++QT++LRS+ QA+Y EN GHFGL ++YAHFTSPIRRYPDL +HRAI+ ++ + Sbjct: 546 DFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRR 605 Query: 591 GHQ-------GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 + + Y Y + QLG+ CSM ERRADEATRDV +WLKC+FM D+V Sbjct: 606 DTPHVRREGAPSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRV 665 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F GVI++VTGFG FV L D++++GLVHV+++ DYY FD + RL GE SG+++RLG Sbjct: 666 GETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGRSFRLG 725 Query: 704 DRVEVRVEAVNMDERKIDFSLI---SSERAPRNVGKTARE------KAKKGDAGKKGGKR 754 D VEVRV V++DERKIDF LI S R+ G+ RE + + + Sbjct: 726 DSVEVRVMRVDLDERKIDFELIAGGSKTAGQRDSGERGREPGNADIRKSRELKQALMAEA 785 Query: 755 RQVGKKVNFEPDSAFRGEKKT-KPKAAKKDARKAKKPSAKTQKI 797 + G+K + + KPK+A K A K+ S +K Sbjct: 786 KSGGRKGKADKAGGSKSRSGASKPKSAGKPAEKSPASSGGPRKR 829 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 358/789 (45%), Positives = 522/789 (66%), Gaps = 10/789 (1%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP +REA+KY NPIPSREFI+E L K +KP ++A L I+ +E+ E L RRL+ Sbjct: 39 MIADPHADREADKYENPIPSREFIIELLEKEQKPLRIKQIATILDIDDDERFEALSRRLK 98 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AM RDGQ++ RR + L +++DL+KG VIGH G+GF++ E DL+L +M H Sbjct: 99 AMVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFH 158 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD+V+A +G DRKGRRE IV ++ I+GR E G+G+V P+++R++ DI IP Sbjct: 159 GDKVIASVIGVDRKGRREGMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQ 218 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D ++ A G +V+VE+ +PT+R+ A+GKI+EV+GD + GM +D A+ ++IP WPQ Sbjct: 219 DGLLDAEEGQIVMVEVIHQPTKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQE 278 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q+ + +EV +E K GR DLR LPLVTIDG D++DFDDAV+ ++++ G WRL VAIA Sbjct: 279 LLDQLEAIPDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-WRLVVAIA 337 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ TPLD+EA RG SVYFP +V+PMLPE LSN LCSLNP VDRLCMVC+M++ Sbjct: 338 DVSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSID 397 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDK 419 + G+L +FY+AVM+S ARLTY +V +L + R+ + +V ++E+L++LY++L Sbjct: 398 NDGKLERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKG 457 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 AR ERG + F++ E + +F+ R+IE+I RN+AHKLIEECM++AN++ AR+++ K Sbjct: 458 ARSERGALEFDTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKWHKI 517 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 P L+R+H+KPS E + + R+ L + GL L GG++P+ DYA + E+V +P ++ T+L Sbjct: 518 PMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVL 577 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRSM QA+Y P+N GHFGL + YAHFTSPIRRYPDL +HRAI++ K+ + Sbjct: 578 LRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQ--------DV 629 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + YS ++M LG+HCS ERRADEATRD +LKC+F+ ++G + V+++ T FG Sbjct: 630 SKFKYSEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEEYDAVVTAATNFGL 689 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV L+ L+++GLVH++ L DY+ +D L GE +G+ YRLGD++ V+V VN+D+RK Sbjct: 690 FVELEPLYVEGLVHITELGEDYFHYDASRHCLKGERTGKVYRLGDKLRVQVAQVNLDDRK 749 Query: 720 IDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKA 779 ID +S + KA K + + KK + Sbjct: 750 IDLRFLSGGGDSSDEQAPIETKAADTSDSKPAEEAPSQEDGDAPKKKKKRYYRKKGGGRN 809 Query: 780 AKKDARKAK 788 KK + A+ Sbjct: 810 RKKKSSAAE 818 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 374/844 (44%), Positives = 512/844 (60%), Gaps = 43/844 (5%) Query: 7 QEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDG 66 +++ + PIPSRE IL L P S ++A L + +E +G ++RL AMERDG Sbjct: 39 FQKKLNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALSVTRKEH-DGFQKRLAAMERDG 97 Query: 67 QLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 Q+ R+ Y L + + V G V GHRDG+GFL + +DD++L +++ +H D+ Sbjct: 98 QIELNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQV 157 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA 186 + +G DR+GR E +IV ++ ++GR +E GV V P+D R+S DILIPP A Sbjct: 158 RVVGYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQGKA 217 Query: 187 RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 R+G VV VEL + P R + VG++VEVLG+ GM ++IA+R + +P+ + A Q+ + Sbjct: 218 RVGQVVSVELIEFPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSPAAAQEAS 277 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG---WRLWVAIADVS 303 L +EV + R+DLRD+PLVTIDGEDARDFDDAVYCE + G WRL VAIADVS Sbjct: 278 ALPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVS 337 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YVRP TPLD +A +R TSVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+ +++KG Sbjct: 338 HYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAKG 397 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKARE 422 L GY+FY AVM S ARLTY +VW +L + + LV HL+ L+ L++VL KAR Sbjct: 398 ELKGYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYELFQVLLKARR 457 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F++ E + NA+ +IE+I RNDAH+LIEECM+ AN+ AA F+E+ K PAL Sbjct: 458 ARGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPAL 517 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIH PS E + + R L GL L GG+KP+ DYAE+++ + RPDA MLQTMLLRS Sbjct: 518 YRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRS 577 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAK-------------- 588 M+QA+Y P+N GHFGL+ ++YAHFTSPIRRYPDL +HRAIK +LA Sbjct: 578 MQQAVYSPDNIGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELN 637 Query: 589 ------------EQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC 636 + Q + +LG HCS ERRADEA+RDV WLKC Sbjct: 638 TAISPKARRLQAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKC 697 Query: 637 DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESS 696 FM D++G+ + G +S+VT FG FV+LD+L+++GLVHV+ L +DY+++D+ L GE + Sbjct: 698 YFMRDKLGSDYAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERT 757 Query: 697 GQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 G YRL DRV V+V V++D RKIDF L+ A + + + R+ Sbjct: 758 GIRYRLTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGGTETQPRVPAAHAVPARK 817 Query: 757 VGKKVNFEPDSAFRGEKKTKP------------KAAKKDARKAKKPSAKTQKIAAATKAK 804 G+++ + + E+ +A R K K K AA K Sbjct: 818 KGRQLAALLGGSSKPEESFDETLDRVIEEQPVFEAVITPLRPHVKTGGKPAKRAAKPKPA 877 Query: 805 RAAK 808 K Sbjct: 878 HLEK 881 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 385/742 (51%), Positives = 516/742 (69%), Gaps = 11/742 (1%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEE-QLEGLRRRLRAM 62 DP +EAEKY NP+ SREFIL+ L++++ P + + L L +G++ ++EGL RR+RAM Sbjct: 8 DPQAAQEAEKYDNPVASREFILQLLSEQDGPLTLNRLISHLEYDGDDERIEGLSRRMRAM 67 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQ++ RR Y +LV+G V+GHRDG+GFL + DD++LS M+ ++GD Sbjct: 68 ERDGQVIRNRRGGYVPVTHAELVRGRVLGHRDGFGFLVPDDGGDDVFLSPRVMRALLNGD 127 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + + Q G DR+GRRE +V V+ ++IVGR EAG+ FVVPD +R++ DIL+P Sbjct: 128 RAVVQVTGLDRRGRREGNLVEVIERANAEIVGRLVLEAGIAFVVPDHARITQDILVPMTD 187 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 +MGAR G +V V L ++PT R K VGK+VEVLGD+M GM +D+A+ +H IP+ WP+ V Sbjct: 188 LMGARDGQIVRVALVEQPTLRHKPVGKVVEVLGDHMSPGMEIDVAINSHGIPHEWPEEVL 247 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + GL EV E K+GRVDLR +PLVTIDG D++DFDDAV+C+ G +RL VAIADV Sbjct: 248 AAIDGLNPEVEESHKSGRVDLRSMPLVTIDGADSKDFDDAVFCQAAPEG-FRLLVAIADV 306 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV + LDRE NR TSVYFP +V+PMLPEVLSNGLCSLNP VDRLC+ +M ++++ Sbjct: 307 SHYVNVGSALDREGFNRATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCADMLINNE 366 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G + ++F+E VM S ARLTY V +L D + R +A L++ LE LH +YKVL AR Sbjct: 367 GHIAKFRFFEGVMKSAARLTYDTVAKVLVDQDAEARAAHAHLLEPLETLHGVYKVLRSAR 426 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 E RG I F++ E K +F R+IE I +RNDAHK+IEECMI AN++A RFV K PA Sbjct: 427 ERRGAIDFDTVETKIVFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFVADHKIPA 486 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+HD+P+ E IT R++LAE GL L GG++P P+D+ LL V R D +QTM+LR Sbjct: 487 LYRVHDRPTAEKITDLRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGRADFLTIQTMILR 546 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 S+KQA+Y P+N GHFGLA + YAHFTSPIRRYPDL +HRAI++LL + Sbjct: 547 SLKQAVYSPDNLGHFGLAHEFYAHFTSPIRRYPDLMVHRAIRHLLRTGAPDR-------- 598 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + Y+ +EM+ +G+HCS ERRADEATRD DWLKC+FMLD+VG VF+G ++SV GFG FV Sbjct: 599 FPYNHDEMVIIGEHCSNNERRADEATRDATDWLKCEFMLDKVGEVFEGRVASVLGFGLFV 658 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L D F++GL+H+++L DYY FD V L GE SG+ Y L D + VRV V++DERKID Sbjct: 659 ELKDFFVEGLLHITALTKDYYHFDPVTLSLRGERSGRVYALNDAITVRVARVDLDERKID 718 Query: 722 FSLISSERAPRNVGKTAREKAK 743 F L + A AR + + Sbjct: 719 FVLPDDDEALSESSGDARSEPR 740 >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 283/756 (37%), Positives = 441/756 (58%), Gaps = 13/756 (1%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 E +L + + KP + EL L+I E+ + L + L A+E G +V TR Y +P Sbjct: 7 MEKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRSDRYGIP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 E+++L+KG + H G+ FL E D+++ ++ T ++GD V+ + R+E Sbjct: 67 EKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSSGSRQE 126 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++R+L ++VG Y GFV+PDD +++ DI IP + GA G VVV+LT Sbjct: 127 GTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKVVVKLTS 186 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P R A G++ +LG G+ + + H +P +P +Q + + + E+ Sbjct: 187 YPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDLK 246 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLRD +VTIDG DA+D DDAV K G ++L V IADVS+YV ++P+D+EA Sbjct: 247 DRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEALE 306 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVY +VIPM+P LSNG+CSLNP+VDRL + CEMT++S+G++T ++ +++V+ + Sbjct: 307 RGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQSVIKTT 366 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R+TY+ V IL D++L+++Y PLV +++ L ++L R +RG + F+ +EAK + Sbjct: 367 ERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAKVL 426 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + E ++ + +R+ A KLIEE M++AN + A P ++RIH++P+ E + F Sbjct: 427 VDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNAEKLQKF 486 Query: 498 RSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G + G PR +L++V DRP+ ++ T++LRSMKQA YDP++ GHF Sbjct: 487 LEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDPQSLGHF 546 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GL+ + Y HFTSPIRRYPDL +HR I+ L + + + E + + +H Sbjct: 547 GLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEK------WAERLPDIAEHT 600 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ERRA +A R+ D K ++MLD++G F G+ISSVT FG FV L + I+GLVHVS Sbjct: 601 SSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNT-IEGLVHVSF 659 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 + +DYYRFD+ ++GE +G +R+GD + V+V VN DER IDF ++ + PR + Sbjct: 660 MTDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPRE 719 Query: 737 TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGE 772 +++K GK KR Q S +GE Sbjct: 720 LDSSRSRKR--GKPARKRVQSTNTPVSPAPSEEKGE 753 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 347/728 (47%), Positives = 481/728 (66%), Gaps = 10/728 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +RE EKY PI SRE+IL +L +P++ +++ +L + E+Q E LRRRLRAM Sbjct: 13 RDPMFDREKEKYERPIVSREYILSYLESAGQPSTLEDIIADLEVSEEDQ-EALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + E ++LV+GTV H DG+GFL EG DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVEAMELVRGTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +L + +G DR+GR E IVR+L Q+VGRY+ E GV +VVP+D R+ + + Sbjct: 132 TILGRAVGEDRRGRIEGAIVRILERALKQVVGRYYAEGGVRYVVPEDRRIPQEFAVVEGG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G +V +E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP V Sbjct: 192 ELAPVHGQIVTLEITQYPDGRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWPDEVL 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ E VPE K GR DLR LPLVTIDG DA+DFDDAVY E+ G +RL VAIADV Sbjct: 252 AEITHFSETVPEAIKEGRRDLRALPLVTIDGADAKDFDDAVYAEEIENG-FRLIVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 + YVRP + LD+EA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM+CEM Sbjct: 311 ATYVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEMETDLT 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + ++F VM S R TY +V IL GD+DLR + A +V HLE LH LY+ KARE Sbjct: 371 GEVQRFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESFAKARE 430 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F+S+E++ I+N + RIE+I RN AH++IEECM+ AN+ AA++ + P L Sbjct: 431 RRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIHELPML 490 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R+H +PS + + R L ELG+ + P D A ++E +R D+ ++QT++LRS Sbjct: 491 YRVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQTVILRS 550 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 + QA Y + HFGLA +Y HFTSPIRRYPDL +HR I+ LL Sbjct: 551 LSQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALLDAAGAE--------PR 602 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + + + +LGQHCSM ERRADEA+R+ +WLKC+FM+D+VG + G+I+ VTGFG FV Sbjct: 603 WFPQKVLQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGETYTGIITGVTGFGLFVA 662 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L +++++GL+H+S+L DY+ FD R++G+ + +T++LGD +++RV VN+D+RKIDF Sbjct: 663 LREIYVEGLIHISTLGEDYFHFDAQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKIDF 722 Query: 723 SLISSERA 730 + E Sbjct: 723 ERVMPEGQ 730 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 370/797 (46%), Positives = 507/797 (63%), Gaps = 29/797 (3%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 +Y P+PSRE+I + L ++ P S LA L I+ E LE RRLRAMERDGQL+ R Sbjct: 2 QYDYPLPSREYIEQTLAEQGVPMSFAALAGALDIQPHE-LEHFERRLRAMERDGQLMRNR 60 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 R + LP++ DL++G V GH DG+GFL + + D++L ++M+ +HGD+ + + G D Sbjct: 61 RDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHGDRAIVRIAGQD 120 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 R+GR E ++V +L S++VGR E GV VVP++ RL+ DIL+ P + G VV Sbjct: 121 RRGRPEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPGG-KKVQPGQVV 179 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 VEL ++PT+ + +G++ EVLG+ GM ++IALR H++P+ + + L V Sbjct: 180 TVELIEQPTKYAQPIGRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEAKADTRKLPTAV 239 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 ++ AGR D+ LPLVTIDGE A+DFDDAVYCE++ G +RL VAIADVS+YV + L Sbjct: 240 RKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-FRLVVAIADVSHYVEAGSAL 298 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 DR+A RG SVYFP +VIPMLPE LSNGLCSLNPQV+RLCMV +M +S G + Y+FY Sbjct: 299 DRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMGISMTGEIKAYRFYP 358 Query: 373 AVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 AVM SHARLTYTKV L D ++ L+ HLE L L++VL KAR +RG I FE+ Sbjct: 359 AVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRVLLKARAKRGAIDFET 418 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E + IF+ +IERI RNDAH+LIEECM+ AN+ A+ F+ K PAL+R+H+ P+ Sbjct: 419 TETRMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHKNDHPALYRVHEGPTP 478 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 E + R+ L+E GL L GG++P +DYA LL+ V DRPDA++LQT++LRS++QA+Y P+ Sbjct: 479 EKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQTVMLRSLRQAVYSPD 538 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +LA E HY+ + Sbjct: 539 NVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAGE-------------HYAAGDWDD 585 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +G HCS ERRADEATRDV WLKC +M D+VG F+G +S+V FG FV LD +FI+GL Sbjct: 586 IGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEEFEGSVSAVVPFGLFVALDGIFIEGL 645 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 +HVS L DY+ +D+ ++GE +G+ +RL DRV V++ V+M+ KIDF L+ Sbjct: 646 LHVSELGADYFHYDEARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKIDFRLVEGPLLA 705 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPS 791 + K A + + P + G K+ KP K R + Sbjct: 706 KPARKAAAPATEALVEVPQD----------AVVPVAPAGGRKR-KPAVEKAPQRATETVE 754 Query: 792 AKTQKIAAATKAKRAAK 808 + + A A K KRA K Sbjct: 755 SPPPQTAPA-KTKRARK 770 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 811 bits (2096), Expect = 0.0, Method: Composition-based stats. Identities = 359/812 (44%), Positives = 493/812 (60%), Gaps = 32/812 (3%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +QDP+ RE +KY +P+PSRE+I++ L P LA +L I E E RRL+A Sbjct: 24 AQDPYLAREQQKYPHPLPSREWIIQLLETTGVPQKIPSLAKQLSIADSE-YEFFERRLKA 82 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV--EGRKDDLYLSSEQMKTCI 119 M RDGQ++ RR E+L++VK V H+DG+GF + DL L Q + + Sbjct: 83 MARDGQILINRRNLVCAAEKLEIVKCRVEMHKDGFGFAVPLIPTGEGDLVLYERQTRGVM 142 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 +GD V +PLG DR+GRRE +I+ ++ + IVGR++ E G+ + P+D RL+ ++++ Sbjct: 143 NGDIVTVRPLGLDRRGRREGQILDIIERAQTSIVGRFYLERGIAVLDPEDKRLTQNVILE 202 Query: 180 PDQIMGAR--MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 PD + G VVV E+T P AV +I EVLGD +GM ++IALR H++P+ + Sbjct: 203 PDSVAQFAPGEGQVVVAEITAYPENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHEF 262 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + A + E+V + RVDLRDLPLVTIDGE +RDFDDAV+ EK G +RL V Sbjct: 263 SAGCLKAAAKIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKI-GRNYRLVV 321 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVS+YV+P +D++A+ R TSVYFP +VIPMLPE LSNG+CSLNP V+RLCMVC++ Sbjct: 322 AIADVSHYVKPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCDI 381 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 ++ G + Y+FY AVM SH RLTY +VW + ++ P + L L+ L+K+L Sbjct: 382 EITFAGNIKSYRFYPAVMKSHGRLTYNQVWEWI-----SQKTQNPYSEQLNTLYKLFKIL 436 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 K R RG + FE+ E + +FN +I+RI RNDAHKLIEECM+ AN+ AA F+ K Sbjct: 437 QKKRHARGAMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLLKN 496 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 K PAL+R H P+ E + + R L LGL+L GG+ P P+DYA L + +A+R D E+LQT Sbjct: 497 KHPALYRNHAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELLQT 556 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 MLLRSM+QA Y+P N GHFGLA + Y HFTSPIRRYPDL +HRAIK +LA Q Sbjct: 557 MLLRSMQQAQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGTQYQA---- 612 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + LG H S ERRAD+A+RDV +WLK +M D+VG VF G IS + F Sbjct: 613 ----------DWQALGAHSSHCERRADDASRDVENWLKTYYMRDKVGEVFAGKISGMANF 662 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 G FV LDD+ I+G+VHVS L DY+ + ++GE SG +++GDRV ++V ++D Sbjct: 663 GIFVTLDDIHIEGMVHVSDLGEDYFNYHPETLSMIGERSGVQFKMGDRVVIKVARADLDT 722 Query: 718 RKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKP 777 KID L+S + + KAKK A G ++ GKK + G K Sbjct: 723 SKIDLVLVSGGES------RSSRKAKKQAANDSGSLKKARGKKAAETAAAPIEGSAGKKS 776 Query: 778 KAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809 + A K + K S K A +AK + Sbjct: 777 RKA-KGSLKTSNASFSEAKTEGANEAKTSEAG 807 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 356/753 (47%), Positives = 490/753 (65%), Gaps = 29/753 (3%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 ++ KY PIPSRE IL L + P + +++A L I+ +E+ EG RR+ AMERDGQ Sbjct: 82 DKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQER-EGFFRRVAAMERDGQ 140 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 + +R Y L + V G V GHRDGYGF+ + +DDL+L + +M+ +H D+VLA+ Sbjct: 141 IRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLAR 200 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 +G DR+GR E +V V +++GR E G V P+D R+S DIL+ + A+ Sbjct: 201 IVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQN-AKKAK 259 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 +G VVVVELT P+R ++ +G++ EVLGD GM ++IA+R + +P+ + + A Sbjct: 260 VGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAA 319 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK---RGGGWRLWVAIADVSY 304 L ++V RVDLRD+PLVTIDGEDARDFDDAVYCE RG G+RL VAIADVS+ Sbjct: 320 LPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSH 379 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV+P +PLD +A R TSVYFP +VIPMLPE LSNGLCSLNPQVDR + C+M ++++G Sbjct: 380 YVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGD 439 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE-QYAPLVKHLEELHNLYKVLDKAREE 423 + Y+FY AV+ S ARLTYT+V +L + + A L+ HL+ L+ +YK L AR++ Sbjct: 440 IKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVYKALFVARQK 499 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I F++ E + NA+ +IE+I QRNDAH+LIEECM+ AN+ AA F+++ K P L+ Sbjct: 500 RGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLY 559 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R+H P+ E + + R+ L ++GL L GG+ P DYA L+ + DRPDA+MLQ MLLRSM Sbjct: 560 RVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSM 619 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ------------- 590 +QA+Y P+N GHFGLA +YAHFTSPIRRYPDL HRAI +L+ ++ Sbjct: 620 QQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNT 679 Query: 591 --------GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 + + G + +LG HCS ERRADEA+RDV WLKC FM D+ Sbjct: 680 ALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDK 739 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +G + G+++ VT FG FV+LD LFI+GLVHV+ L DY+++D+V L GE +G YRL Sbjct: 740 LGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYRL 799 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSE--RAPRN 733 DRV V+V V++D RKIDF L+ +APR Sbjct: 800 SDRVRVQVSRVDLDARKIDFRLVRETPVKAPRP 832 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 355/747 (47%), Positives = 473/747 (63%), Gaps = 12/747 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +REA +YA PI SRE IL+ L + P + +E+A +L++ ++++ L +RL AM Sbjct: 106 KDPHADREALRYAEPIASREAILQLLEACDGPQTAEEIAEQLNLS--DRIDALGKRLAAM 163 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 R+ QLV RR YA ++ L+ G VI + +G+GFL+ +G DDL+L +M+ +HGD Sbjct: 164 VREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHGD 223 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + LA G DR+GRRE I RVL S+++GR+F E GV +V PDD R+ ++ I PD Sbjct: 224 RALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDG 283 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 I AR G +VV EL P R A+GKI+ VLGD + + V++A+ HE+P+ +PQ V Sbjct: 284 IGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVL 343 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + A + V + GRVDLR +PLVTIDGEDA+DFDDAVYCE G +RL VAIADV Sbjct: 344 DEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADG-FRLVVAIADV 402 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S YVRP TPLD EA+ R TSVYFP V+PMLPE LSNG+CSL P+VDR+C VC+M V Sbjct: 403 SNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGGD 462 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G +TG +FYEAVM+SHARLTY +VW + +GD D + PL+ ++ LH LY+VL KAR Sbjct: 463 GEVTGSRFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQVLSKAR 522 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 RG I FE+ E +F+ + + + RNDAHKLIEECMI AN+ AAR++ PA Sbjct: 523 THRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSMHVPA 582 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+H++P L E L LP +K P DY +LL+ V RPDA +L+++LLR Sbjct: 583 PYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLR 642 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 S A+Y PEN GHFGLAL++YAHFTSPIRRYPDL +HRA+K+ L + Sbjct: 643 SQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEK-------- 694 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + Y+ +M L CS RRADEA R+V + + +M VG F GVIS VTGFG FV Sbjct: 695 FIYTPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTGFGLFV 754 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L ++GLVHV+ L DYY+FD + + L GE G+ +RLGD V V V +M+ERKID Sbjct: 755 ELTQSKVNGLVHVTQLPQDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKID 814 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAG 748 F L AP K+ Sbjct: 815 FRLAEEGAAPEAPLPLRETSTKRKKKS 841 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 348/732 (47%), Positives = 482/732 (65%), Gaps = 13/732 (1%) Query: 2 SQDPFQEREAEKY-ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DPF RE +KY NP+PSREFIL L + K + ++A ++ E E L+ RL+ Sbjct: 14 TLDPFFAREQQKYGDNPLPSREFILNWLEAQGKLLTFAQIARAFDMDAAES-EKLQIRLK 72 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AM GQL+ R+ + + ++DL+ G V+ H++GYGF E + D ++ + M +H Sbjct: 73 AMLGAGQLMCNRQGRFGVARKMDLISGFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMH 132 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD++LA+ D +GR++ V +L +IVG+ + GV ++PD+ RL+ ++IP Sbjct: 133 GDKILARVKDTDERGRKDYAPVEILERAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPA 192 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D + G + G VV+ E+T P+R + +GK+V VLG+ M GM VDIA+ H IP ++P+A Sbjct: 193 DALGGGKAGQVVIGEITAYPSRFQQPIGKVVAVLGEAMAAGMEVDIAIENHNIPAVFPEA 252 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V +Q + + + ++ GR+DLR LP VTIDG ARDFDDAVY EK RG +RL+VAIA Sbjct: 253 VREQCEKIPDALRDQDYEGRLDLRHLPFVTIDGISARDFDDAVYAEK-RGENYRLYVAIA 311 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV++YVRP +PLD EA NRGTSVYFP +VIPMLPE LSNGLCSLNP VDRL MVCE+T++ Sbjct: 312 DVAHYVRPDSPLDIEAYNRGTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEITLA 371 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVLDK 419 G + F++AV+ SHARLTY V IL D +RE +A L + L+ L +Y +L Sbjct: 372 PDGSIKRSAFHDAVIHSHARLTYETVEEILFLDNQMVRESFAALQRPLDNLKTVYGILRA 431 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 AR R I F + E +FI+++E +IE I+ R ++H+LIEECMI ANI AA+++ + K Sbjct: 432 ARLARSVIDFHASEPEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGRHKL 491 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTM 538 PAL+R+HD PS E + L + G++ G + P ++ LL ADRPD ++ M Sbjct: 492 PALYRVHDHPSAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQIEIM 551 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 +LRSM QAIY PENRGHFGLAL+ YAHFTSPIRRYPDL +HRAI++ L Sbjct: 552 VLRSMSQAIYIPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQLQGGT-------- 603 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 Y YS E M++ G+HCSM ERRADEATRD D+LKC+FM ++G F G I+++T FG Sbjct: 604 RDNYRYSAESMVEKGKHCSMTERRADEATRDAMDFLKCEFMSHRIGETFTGRIANITNFG 663 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FFV LDD++IDGLVHVS+L NDYY + L GE SG + L D VE++V V+++ER Sbjct: 664 FFVTLDDIYIDGLVHVSALTNDYYHYSAETFTLNGERSGTRFALMDAVEIQVAKVDIEER 723 Query: 719 KIDFSLISSERA 730 KIDF L++ + Sbjct: 724 KIDFELLAHKGK 735 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 798 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 278/782 (35%), Positives = 445/782 (56%), Gaps = 38/782 (4%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + +L + ++ KP ELA I ++ + ++ L ME++G ++ TR + Y +P Sbjct: 4 KGTLLSFMNEQAYKPMDIKELARIFDIRKKD-MHMFQQVLDDMEKEGTIIKTRTENYGVP 62 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 R++L+ G + GH G+GF+ + D+++ S QM IHGD+V+A+ ++ G++ Sbjct: 63 ARMNLIIGKLQGHSKGFGFVIPDEEGVKDVFIPSSQMGGAIHGDRVVAKITFGEKNGKKC 122 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E I+R+L T +++G Y GFV+P+D R+SFDI +P + GA+ G VV+ E+ Sbjct: 123 EGEIIRILERNTKEVIGTYEDSRNFGFVIPEDKRISFDIFVPKNFRSGAKTGQVVICEIL 182 Query: 198 QRPTR-RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + P R GKI +LG+ G+ + ++ H +P +P V + EE+P++ Sbjct: 183 EYPDDSRRNPEGKIKNILGNKGDKGIDILTIIKKHGLPEEFPAKVLDAAESIDEEIPDKE 242 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLRD+ +VTIDGEDA+D DDAV K G + L V IADV++YV+ S+ LD EA Sbjct: 243 IARRRDLRDMMMVTIDGEDAKDLDDAVSLSKLDNGNYYLGVHIADVTHYVKESSKLDNEA 302 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTS Y +VIPMLP LSNG+CSLNP+VDRL + C M ++ KG++ ++ E+++ Sbjct: 303 FLRGTSTYLIDRVIPMLPRKLSNGVCSLNPKVDRLTLTCFMEINDKGKVENHEIVESIIK 362 Query: 377 SHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 ++AR+TYT V IL DQ+L E+Y LV + + L +L+ R++RG + F+ +E K Sbjct: 363 TNARMTYTNVTKILRDKDQELIEEYKELVPMFQAMEELQHILEAKRKKRGAVDFDFQECK 422 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I N + I+ +R A+K+IEE M+ N + A + +K P ++RIH++P+ E + Sbjct: 423 IILNEMGKPVDIKPYERAIANKIIEEFMLACNETIAEHMFWSKMPFVYRIHEEPNEEKLE 482 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 F LG + + P+ E++E V + + ++ T+LLRSM QA Y PE+ GH Sbjct: 483 HFNEFARNLGYVVKKTKEVHPKHLQEIVEQVKGKKEETVINTLLLRSMMQARYSPESLGH 542 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA + Y HFTSPIRRYPDL +HR IK + + + T + + Sbjct: 543 FGLAAKYYCHFTSPIRRYPDLQIHRIIKSFINGKIDEKYMKKLTVT-------VEKASLQ 595 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ER A +A R+V D K ++M D++G V++G+ISSVT FG FV L++ ++GL+H+S Sbjct: 596 SSERERAAQDAEREVDDLKKAEYMSDRIGEVYEGIISSVTNFGMFVELENT-VEGLIHIS 654 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVG 735 +L++DYY +D+ L+GE + YRLGD +++ V+ V++ +I F + + + Sbjct: 655 TLNDDYYVYDEDRLWLLGERTKNIYRLGDSIKIIVDKVDLAAHEIYFEVFKEDNIEDKIE 714 Query: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQ 795 + E+ K F+G+KK P+A KK K + S + Q Sbjct: 715 EYKDEEEK------------------------FFKGDKKDLPEAVKKQLLKDLETSLEDQ 750 Query: 796 KI 797 + Sbjct: 751 QQ 752 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 342/751 (45%), Positives = 493/751 (65%), Gaps = 14/751 (1%) Query: 3 QDPFQEREAEKY-ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +DP+ RE EKY NP+PSREFIL L ++ K + ++ ++ E + + L R++A Sbjct: 12 RDPYYRREIEKYGKNPLPSREFILLWLEEQGKLLTFPQIVKAFNM-SEARGDLLHYRIKA 70 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M GQL+ R+ + ++DLV G VI H +GYGFL VEG DD ++ + M+ +HG Sbjct: 71 MIAAGQLMRNRQGFIGVSHKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHG 130 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ D +GR++ V +L ++VG+ G+ V+P++ RL+ I+IP Sbjct: 131 DKILARIKHVDGQGRKDYVPVEILQRGQKRVVGKLLNNQGIFSVIPENRRLTQPIMIPKA 190 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + A +V+ E+T P++ +A+G IV+VLGD M G+ V IA+ + IP + AV Sbjct: 191 ALGDAVANQIVLAEITAYPSKHQQAIGTIVKVLGDEMAAGLEVAIAIENYNIPNHFSDAV 250 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q+ + + + E R+DLR LP+VTIDG ARDFDDA+Y EK RG +RL+VAIAD Sbjct: 251 RAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEK-RGENYRLFVAIAD 309 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSYYV+P +PLD EA RGTSVYFP +V+PMLPE LSNGLCSLNP VDRLC+VCE+T++ Sbjct: 310 VSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELTITP 369 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVLDKA 420 G++ KF++AV+ SHARLTY V IL D ++E +A L LE+L +Y++L A Sbjct: 370 SGQIKNSKFHQAVIQSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQILRTA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 RE+R I F+ +EA+F+F++E +IE I+ ++++LIEECM++AN++AA+F++K K Sbjct: 430 REKRQAIRFDFKEAEFLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQKHKLI 489 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 L+R+HDKPS E + A+LG + P + +A LL+ R D +L+ M+L Sbjct: 490 GLYRVHDKPSAERFEKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLEKMIL 549 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y ENRGHF LAL YAHFTSPIRRYPDL +HRAI++ L +E Sbjct: 550 RSLPQALYSSENRGHFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESSE-------- 601 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 YS+E+M ++ +HCSM ERRAD+A+RD D+LKC+FM ++G+ F G ISSVT FG F Sbjct: 602 VSLYSLEKMDEMAKHCSMTERRADDASRDAMDFLKCEFMSHRIGDEFFGEISSVTSFGLF 661 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + LD+ FIDGLVHVS+L +DYY +D RL+GE SG +Y+L D+V +RV VN++++KI Sbjct: 662 ITLDEFFIDGLVHVSTLPSDYYHYDADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKI 721 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKG 751 DF L+ E + + K R + K +KG Sbjct: 722 DFELL--EHQGKKLNKKKRTRTDKRGRARKG 750 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 361/812 (44%), Positives = 503/812 (61%), Gaps = 27/812 (3%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP +REAEKY NP+PSRE IL+ L + KP S + LA L ++ E ++ GL RR++AM Sbjct: 19 DPHADREAEKYENPVPSRELILDVLNDQGKPLSFELLAQLLEVDEEGEV-GLDRRIKAML 77 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGD 122 RD QLV R + R+DL+ G V GH+DG+GFL + + + DL+L+ QM+ + GD Sbjct: 78 RDAQLVQNRNGKVGVVSRMDLIAGRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMDGD 137 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +VL G +R G++EARIV + ++++GRY EAG+ F+ P++ R++ ++LI Sbjct: 138 RVLVSNAGYNRFGKKEARIVEITERVATEVIGRYSREAGISFIEPENRRITKEVLIEDKN 197 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G V +TQ P+R + ++ E++ GM V++ALR EIP++WP+ VE Sbjct: 198 GIKPNPGDHVRATITQYPSRDHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVWPEGVE 257 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VP E KA RVDLRDLPLVTID E ARDFDDAVY E++ GGWRL VAIADV Sbjct: 258 AAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIVAIADV 317 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+P + LD+EA RG SVYFP++VIPMLPE LSNGLCSLNP VDRLC+ C+M +S+ Sbjct: 318 SHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDMKISAN 377 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ------YAPLVKHLEELHNLYKV 416 GRLT + F E VM S RLTY KV I++ + Q + + H ++ Sbjct: 378 GRLTRFIFREGVMRSRHRLTYNKVGAIIEEPESELAQDTVASLDDESLDMIWSFHEMFLA 437 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L + R ERG I F+S++ + I++ ++IE I QRN AH +IEE M+ ANI +A+ +EK Sbjct: 438 LRRRRAERGAIDFDSDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICSAKLLEK 497 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEM 534 A PAL+R H+ P E ++ + L LGL + G P+P + +L E + +RPD + Sbjct: 498 AGVPALYRNHEPPKEERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILERPDRNV 557 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA------- 587 +QTM+LR+M QA Y+ EN+GHFGLA ++Y HFTSPIRRYPDL +HRAI++L+ Sbjct: 558 IQTMMLRTMSQAKYEAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLIRSNGEPNH 617 Query: 588 -KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 G+ Y+ +M+ +G+ CSM ERRADEATRDV WLKC FM +G V Sbjct: 618 VDNPGNLPEIPRQKILPYNQADMVAIGEQCSMTERRADEATRDVVSWLKCQFMEAHLGQV 677 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F+G IS V FG FV+L DL IDGLVHV++LD+DYY FD+V L GES+G+ + LGD V Sbjct: 678 FEGAISGVASFGLFVQLSDLHIDGLVHVANLDSDYYHFDEVSLTLTGESTGRQFGLGDAV 737 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAR--------EKAKKGDAGKKGGKRRQVG 758 V V AV+ ++RKID L S + + K A K + K + Sbjct: 738 TVCVAAVHTEDRKIDLQLESFTPSGKGRPKAASKKKPSGGRGKGGRSGNAGKAESGQSER 797 Query: 759 KKVNFEPDSAFRGEKKTKPKAAKKDARKAKKP 790 +K+ + ++K P+ KK AR+ KK Sbjct: 798 EKLAKGDIPKAKAKRKGPPR-GKKAARRTKKS 828 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 377/797 (47%), Positives = 518/797 (64%), Gaps = 18/797 (2%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP+QERE KY NPIPSRE++LE L +P R E+A L +E E E LRRRLRAM Sbjct: 12 RDPYQEREQAKYDNPIPSREYLLELLAAHRRPLGRREIADALGLESPEHHEALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR+ Y + + +LV+G V+G DG GFL +G D L LS QM+ +HGD Sbjct: 72 ERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + +A+ G D G + +V +L QI GR+F E GVGF+VP++ RL D+L+ PD Sbjct: 132 RAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLLAPDG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 GA G + V E+ +P R + +G+I++VLG + G +A R H IP WP VE Sbjct: 192 RGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWPAEVE 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VA EEVPE K GR DLR LPLVTIDG DA+DFDDA+YCE G WRL VAIADV Sbjct: 252 KEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG-WRLVVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YVRP T LD+EAR RG SVYFP V+PMLPE LSNGLCSLNP+VDRL MVC+M + Sbjct: 311 SHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDMLLQGN 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTK-VWHILQGDQDLREQY-APLVKHLEELHNLYKVLDKA 420 G++ +FY AV+ S ARLTY + ++ GD+ +R +V+HLE LH LYK L KA Sbjct: 371 GKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENLHGLYKTLRKA 430 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ERG I F++ E + F+ E R+ +E T+RND HK++EECMI AN+ A+F+ K K P Sbjct: 431 RDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFLLKNKVP 490 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 +L+R+H++P + + + LA+ GLEL GG++P +DY ++E +RPD +++T+LL Sbjct: 491 SLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHLIETVLL 550 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+ A Y P+N GHFGLAL++Y HFTSPIRRYPDL +HR I +++ +G Sbjct: 551 RSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHRGR-------- 602 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + +++ LG+HCSMAERRADEATRD LKC+++ D +G+ F GVI++VT FG F Sbjct: 603 SFPMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDEFTGVIAAVTSFGLF 662 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L+ +++DGLVH+++L++D++ FD VG RL+G+ +G+ YRL DRV VRV V+ D+RKI Sbjct: 663 VSLEGVYVDGLVHITNLESDFFHFDSVGHRLVGDRTGKEYRLSDRVRVRVGRVDKDDRKI 722 Query: 721 DFSL----ISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFR---GEK 773 D + + ++ P + + + K G GK +R + + S R G Sbjct: 723 DLEVVAHPVDADGEPLDGSRKRGKGGKSGQGGKARSERSGGKQSAARQGASGGRAKSGRG 782 Query: 774 KTKPKAAKKDARKAKKP 790 K P + KP Sbjct: 783 KAAPSGSGPSGDGKGKP 799 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 272/792 (34%), Positives = 437/792 (55%), Gaps = 15/792 (1%) Query: 21 REFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I+ + K KP EL + L + EE +E + + +E +G++ T + Y +P Sbjct: 8 KERIVAFMRDKAYKPLLFKELRMVLDVP-EEDIELFTQVMDELEEEGRVFKTHGKRYGVP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 RL+LV G + GH GYGFL + +D+++ ++ + +H D+V+A+ R+ Sbjct: 67 SRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSSSDRKM 126 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E I+R+L + +VG + GFVVPD+ R+S DI + + GA+ G VVVE+ Sbjct: 127 EGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFVSKSEFHGAKKGQKVVVEIL 186 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + P R A G+++E++GD TG+ + ++++ + +P+ V Q + + V EE Sbjct: 187 KYPEARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIGDTVTEEMI 246 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLR L +VTIDGEDA+D DDAV E G +RL V IADV+ YV ++PLD EA Sbjct: 247 QGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSPLDLEAL 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 +RGTSVY +VIPMLP LSNG+CSLNP VDRL + + G+ ++ +E+V++ Sbjct: 307 DRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNHEIFESVINI 366 Query: 378 HARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V+ IL + DQ+L ++Y+ +V +++ L +L K R +RG I F+ +EA+ Sbjct: 367 DERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAIDFDFDEARV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + + +++ + A+++IEE M+ N + A P ++RIH+ P E I + Sbjct: 427 VIDEKGKPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHEDPDEEKIHN 486 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 L LG + G NK PR +LLE V ++ T +LRS+++A Y E+ GHF Sbjct: 487 LNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKARYSNESTGHF 546 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRYPDL +HR +K L ++ + ++ + C Sbjct: 547 GLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGG-------MSEEKINHLEGILPEIAKQC 599 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER ADEA R+ D K ++M G +F+G+I++VT FG F+ LD+ I+GLV +SS Sbjct: 600 SERERAADEAERESEDLKKVEYMKAHEGEIFEGIIANVTSFGMFIELDNT-IEGLVRMSS 658 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 +++DYY +++ L+GE + + YR+GD V+V + ++ RKI+F L+ S+ Sbjct: 659 MEDDYYNYNESHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFILVESDDEDDFDNI 718 Query: 737 TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQK 796 + + K R+ KK + + +K + A+ + K K K Sbjct: 719 DQETEDELIFTKNKS--RKSSIKKNSQSTKAVKADDKGGRNSASDNKSGKKGKIIDKKVY 776 Query: 797 IAAATKAKRAAK 808 K KR + Sbjct: 777 EKIMGKRKRKKR 788 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 779 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 301/777 (38%), Positives = 428/777 (55%), Gaps = 15/777 (1%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 S++ IL L +++ + + G L+R L M +DG+LV R YAL Sbjct: 4 SKKNILAFLKQQDGAIHFAGILRQFG--GRHVKNELKRMLDDMAQDGELVRFRGNSYALA 61 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRRE 138 ++G + HRDGYGF+ +G +D+++ M+ +HGD V + G+ E Sbjct: 62 SAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRHMRGAMHGDTVEVHAERSRMGGGKFE 121 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 RI V+ S++VGRY V+P+++RL+ I IPP A+ G VVVEL+ Sbjct: 122 GRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPPKGRGLAQDGQQVVVELSS 181 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P A G +VEVLG + V A+R ++P+++ + + E VP + A Sbjct: 182 YPVGGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVFAPDTLAEAEAIPETVPAQELA 241 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 GRVDLR L VTIDGE ARDFDDAV + G +RLWV+IADVS+YVRP +PLDR+A Sbjct: 242 GRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWVSIADVSHYVRPDSPLDRDAYL 300 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVYFP + IPMLPE LSNG+CSLNP V+RL M EM G + FY +++S Sbjct: 301 RGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEMLFDRDGSMLESSFYPGIIASA 360 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 ARLTYT+V ++ D++ + + L E+ L +L R +RG I F+ E++ I Sbjct: 361 ARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELALILMGMRRKRGSIDFDLPESEVI 420 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 E I + +R AH+LIEE M+ AN + A F+ + P L+RIH+ P + +F Sbjct: 421 IGLTGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIAEKGIPLLYRIHENPDPAKLINF 480 Query: 498 RSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G E P + P D LLES A RP+ M+ LLR MKQA Y EN HF Sbjct: 481 QEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERMINYALLRCMKQARYAAENLHHF 540 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRYPDL +HR +K LLA + ++G+ + + ++G+H Sbjct: 541 GLASRCYCHFTSPIRRYPDLVVHRILKALLALAE-NRGSKQAEKRLSLATHNLSEVGEHT 599 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A EA RD+ + K FM +G F G I+ VTGFGFFV L++LF++GLVHVS+ Sbjct: 600 SKRERVAMEAERDIVELKKAQFMQQHLGEEFDGFITGVTGFGFFVELEELFVEGLVHVST 659 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV-- 734 LD+D Y F + L+G + G+ R+GDR VRV +V+ R+I+F L+ + + Sbjct: 660 LDDDLYTFVENRHSLVGRNRGRVLRIGDRARVRVASVSPATRRIEFVLVGHASSTPQMPL 719 Query: 735 -----GKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK 786 G+ R + +G +R G K + G+K+TK A + RK Sbjct: 720 TTAGDGEFPRTPIRGKRLPGQGRERNAEGTKPSPAAGR-REGQKRTKKGAVRTGGRK 775 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 272/752 (36%), Positives = 416/752 (55%), Gaps = 24/752 (3%) Query: 13 KYANPIPSREFI-----LEHLTKRE--KPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 KY+N I E + L K +P +EL I+ E ++ LR ME + Sbjct: 10 KYSNSIMEEEIMGIKQTLASFMKEPAYRPMDIEELIAVFDIKKNE-YNAFKKTLRTMENE 68 Query: 66 GQLVFTRRQCYALP----ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIH 120 G ++ T++ Y + E L+ G++ H G+GFL E D+++ S + ++ Sbjct: 69 GLIIRTKKDKYMIANANHEEEGLIIGSLQSHSKGFGFLIPEEEGQKDVFIPSNCINGAMN 128 Query: 121 GDQVLAQPLGAD-RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD++ + D + +RE +V ++ T++IVG Y GFVV +D R+S D+ I Sbjct: 129 GDKISVRVTREDTKTKKREGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFIS 188 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 GA G VV V++T+ P KA G + EVLG G+ + + ++ +P + + Sbjct: 189 KKDRNGANDGDVVTVKITKWPEENRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFSE 248 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 V++ G+ +E+ EE GR DLRDL +VTIDGEDA+D DDAV EK G ++L V I Sbjct: 249 KVQKYAEGISDEIDEEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHI 308 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADV++YV+ ++PLD+EA R TSVY +V+PMLP LSNG+CSLNP+VDRL + C M + Sbjct: 309 ADVTHYVKENSPLDKEALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFMEI 368 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLD 418 KG++ ++ E+V+ ++ R+TY V IL D++L ++Y LV + + L +L Sbjct: 369 DHKGKVVDHEIVESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILR 428 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 R +RG I FE EAK N + I+ R ++++IEE M+ AN + A + Sbjct: 429 NKRTKRGAIDFEIAEAKITLNELGKPIEIKPYDREISNRMIEEFMLAANETVAEHMFGTH 488 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 P ++RIH+ P E + F+ + LG + + P+ + E+LE V + + ++ T+ Sbjct: 489 LPFVYRIHESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTL 548 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 LLRSM QA Y PE GHFGLA + Y HFTSPIRRYPDL +HR IK L E Sbjct: 549 LLRSMMQARYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKL 608 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 Y + S ER+A +A R+V D K ++M +++G F+G+ISSVT FG Sbjct: 609 KNIVGY-------AAKQSSEMERKAQDAEREVDDLKKAEYMQERIGQEFEGIISSVTSFG 661 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FV L + I+GLVH++ LD+DYY F++ L+GE + + Y+LGD+V+V V++ R Sbjct: 662 IFVELPNT-IEGLVHITDLDDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVNVDITNR 720 Query: 719 KIDFSLISSERAPRNVGKTAREKAKKGDAGKK 750 +I F + + E K + K + KK Sbjct: 721 EIFFKI-TQEPKREETDKDFESEGKISEVEKK 751 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 320/723 (44%), Positives = 465/723 (64%), Gaps = 18/723 (2%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DPF +RE++KYA+PIPSREFIL+ + K P ++EL L I+ E+ E L RL+A Sbjct: 13 SNDPFFKRESKKYAHPIPSREFILDVMKKCGTPIKKNELIKLLRIKKSEE-EALTHRLKA 71 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIH 120 M RDGQ++ R+ + + E+++ + G V GH DGYGFL + DD++L+ ++M H Sbjct: 72 MRRDGQILKNRKDVFCIAEKINCISGKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFH 131 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 D+V+ Q G DRKG+ E IV VL + +VGR GV V +D R+ DI+IP Sbjct: 132 NDRVMVQISGLDRKGKAEGTIVEVLERFNTVLVGRVVQSYGVTIVAAEDKRIHQDIIIPY 191 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + M A G +V VE+T +P K +G+I+EV+G +G+ ++IALR H +P+ + + Sbjct: 192 GKDMDAVPGDIVEVEITTQPAMNIKPMGQIIEVIGKLDDSGIEIEIALRKHNLPFRFDKK 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 +++++ + + + + R+DLRD +TIDGE A+DFDDAVY E ++L V IA Sbjct: 252 IDKELEKISD-ISDGDLKDRIDLRDNFFITIDGETAKDFDDAVYAE-NHKEFFKLLVGIA 309 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ + LD+EA +RG SVYFP +VIPMLPE LSN LCSLNP VDRL M+ +M ++ Sbjct: 310 DVSHYVKEGSALDKEAFDRGNSVYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMVIT 369 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 KG + Y+FY AV++S RLTYT V ++ Q+ +E L++HL L ++Y+VL +A Sbjct: 370 KKGEVQSYEFYPAVINSKHRLTYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVLSEA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +R I F+ E++ +F+ +I+ I RN+AH+LIEECM+ AN+SAA ++ K Sbjct: 430 RNKRHAIEFDRIESQILFDEGGKIKDIVPLTRNEAHRLIEECMLAANVSAADYLLSKKI- 488 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFR H+KP E + +SVL++ + + GG P DY EL+ + ++ + +MLQTM+L Sbjct: 489 GLFRNHEKPKDEKLEILKSVLSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQTMIL 548 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+QA Y N+GHFGLA Y HFTSPIRRYPDL +HR IK L K++ Sbjct: 549 RSMQQANYGSVNKGHFGLAYDKYTHFTSPIRRYPDLVVHRLIKSFLNKKR---------- 598 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + +G HCS ERRADEATRDV +WLKC +M D++G F VISSVT FG F Sbjct: 599 ---LKTDNLESIGNHCSSTERRADEATRDVENWLKCFYMKDRIGEKFDVVISSVTNFGIF 655 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V + L I+GLVHV+ L NDY+ F++ Q L GE + + +RLGD + V++ V+++ K+ Sbjct: 656 VEISRLHIEGLVHVTELGNDYFVFNKEKQMLEGEKTKKKFRLGDELAVKLIRVDLELGKM 715 Query: 721 DFS 723 DF+ Sbjct: 716 DFT 718 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 291/798 (36%), Positives = 445/798 (55%), Gaps = 33/798 (4%) Query: 23 FILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 IL ++ + P S DEL L +EG + L+ ++ +E GQ++ TR Y LP Sbjct: 9 KILGYMKEHPTAPLSADELLQALTLEGAD-LKLFWTVMKELEDRGQVIKTRFNIYGLPAA 67 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDD--LYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + LV G G+ F+ E + +D L++ + + + GD V+A+ + + R+E Sbjct: 68 MGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGYDDRQEG 127 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +I+R+L ++VG + GFV+PD+ R+ DI + GAR VVVE+T Sbjct: 128 KIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVRRKDFNGARDKEKVVVEITTW 187 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P R A GKIVE+LG G+ + ++ +++P +P V+ +++++ ++ Sbjct: 188 PDERRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQKIKKKEIQN 247 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+D RD ++TIDG D++D DDAVY EK +G + L V IADVSYYV+P + LD+EA R Sbjct: 248 RLDRRDWNIITIDGVDSKDLDDAVYVEK-QGDNYFLGVYIADVSYYVQPHSVLDQEAYER 306 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMSSH 378 GTSVY +V+PMLP LSNG+CSLN DRL M CEM + GR + V+++H Sbjct: 307 GTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFTIAPCVINNH 366 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R+ Y V IL D+ LRE+YA +V LE++ L +VL K RE RG I+FE E K + Sbjct: 367 HRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAINFELPEQKVL 426 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + ++ I + +R+ A LIEE M+ AN + A F+ + K P ++R+HD P E I + Sbjct: 427 LDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDLPDPEKIQNL 486 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 ++A G+ L K P+D L+ VA +P+ +++ T+ LRSM+QA+Y EN GHFG Sbjct: 487 AKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVYQTENIGHFG 546 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y HFTSPIRRYPDL +HR ++ L E+ + E + + + HCS Sbjct: 547 LAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEE------RTQRLSLVASHCS 600 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 + ER A +A R D ++M+ VG F G IS V+ FGFFV LD+ ++GLVHVSSL Sbjct: 601 VRERAAIDAERQTVDLKMAEYMVQFVGKEFTGTISGVSSFGFFVELDN-GVEGLVHVSSL 659 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS-----SERAPR 732 ++DYY + + L+G+ G YRLGD+V+++V V++ ERKIDF L +++ R Sbjct: 660 NDDYYDYIEGQYALIGQHLGHRYRLGDQVDIQVLQVDVAERKIDFVLAGLAPEAADQMRR 719 Query: 733 NVGKTAREKA-------KKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 +G+ + K + G+K G+R++ GKK + RG ++ K K Sbjct: 720 ELGRQKKTKTGIATGKLRNDTTGRKSGERKESGKKNS-------RGGRRKKKKNGSPRQN 772 Query: 786 KAKKPSAKTQKIAAATKA 803 Q+ A ++ Sbjct: 773 GTGLSQLVPQETTPAGES 790 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 774 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 287/768 (37%), Positives = 440/768 (57%), Gaps = 17/768 (2%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 E I+ LT +K + ++L +E+ + + + + + L +E G +V +R+ YALP Sbjct: 7 EEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 E++DLVKGT H G+GF+ E ++ DD+++ ++K ++GD V A E Sbjct: 67 EKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAE 126 Query: 139 ARIVRVLVPKTSQIVGRYFTE-AGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 I +++ KT+QIVG Y + AG V+PDD RL ++ I + + G V+VELT Sbjct: 127 GTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELT 186 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + T +A G + ++G G+ + + H I +P+ V +QV+ + V + Sbjct: 187 EYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDI 246 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R DLRD ++TIDG DA+D DDAV + G W+L V IADV++YV +PLD EA+ Sbjct: 247 GNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQ 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP LSNG+CSLNPQVDR M CEM + +G + ++ +E+++ + Sbjct: 307 ERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESIIKT 366 Query: 378 HARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V IL + D+ LRE+YAP+V LE++ +L ++L + RE+RG I F+ +EA+ Sbjct: 367 TERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEARV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + E + +R+ LIEE M+ AN + A P ++RIH+ P + + Sbjct: 427 VVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLAR 486 Query: 497 FRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 F + GL + G N P ++LE V +P+ ++ T++LRSM+QA YD + GH Sbjct: 487 FFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGH 546 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGL+ Y HFTSPIRRYPDL +HR I+ L + EE+ ++ +H Sbjct: 547 FGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEK------RAEELPEIAEH 600 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ERRA EA R+ + K +FM+D+VG F G+ISSVT FG F+ L I+GLVHVS Sbjct: 601 SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTT-IEGLVHVS 659 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVG 735 ++ DY++F Q ++GE +GQ YR+GD VEV V V++D R+IDF+L S + Sbjct: 660 AMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSD 719 Query: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKD 783 K R++ K D + ++ G+ +S +TKPK +KD Sbjct: 720 KQKRQREKPIDKTRNFKSNQKKGRNKRRTGNS-----DETKPKTERKD 762 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 287/801 (35%), Positives = 435/801 (54%), Gaps = 32/801 (3%) Query: 19 PSREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 + +L+ + + KP + EL I + + + L +E +G+++ TR + Y Sbjct: 2 MQEQGLLDFMRETAYKPMTYQELEQHFGINDAAEFKEFLKLLNQLEEEGKVIRTRNERYG 61 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKG- 135 +PER++L++G + H G+ FL + + D+Y+ + K+ ++GD L + G Sbjct: 62 VPERMNLLRGKIQAHAKGFAFLLPDEKDHPDVYIHANDQKSAMNGDIALVRITSQSEGGG 121 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 R E +VR++ +Q+VG + + GFVVPDD R++ DI IP + GA G VVV+ Sbjct: 122 RMEGEVVRIVQRAVTQVVGTFESHEAFGFVVPDDKRINRDIFIPKGEFQGAVTGQKVVVK 181 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 +T P R+ A G+I+E+LG G+ + +R H++P + V + + + EE Sbjct: 182 ITSYPEGRSAAQGEIIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAEAAPDSITEE 241 Query: 256 A--KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + GR DLR +VTIDGEDA+D DDAV+ ++ G + L V IADV YYV+ + LD Sbjct: 242 EIVEQGRRDLRGEVIVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGYYVKERSALD 301 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA RG SVY +VIPMLP LSNG+CSLNPQVDRL + CEM SK + + + + Sbjct: 302 QEAFRRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLKRVRHDIFTS 361 Query: 374 VMSSHARLTYTKVWHILQGD-----QDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 V+ + R+TYT V IL +L+E+YA L+ + L L K R +RG I Sbjct: 362 VIKTKERMTYTNVRKILMATEEEPETELKERYADLLDMFTLMEELAMKLRKKRMKRGAID 421 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 F+ +E+K I + E + I + +R+ A ++IEE M+ AN + A + P L+RIH+ Sbjct: 422 FDFQESKVIVDKEGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPFLYRIHED 481 Query: 489 PSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 P E + F + G + G GN PR LLE + + ++ T++LRSMKQA Sbjct: 482 PDQEKLLHFMQFASNFGYVVKGKGNSVHPRALQTLLEEIHGTKEETVISTVMLRSMKQAK 541 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 YD E+ GHFGLA + Y+HFTSPIRRYPDL +HR I+ +L E Sbjct: 542 YDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVLENGGALPEIRNEALAAR---- 597 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 M + QH S ER A +A RD KC+FMLD+VG F G+ISSVT FG FV LD+ Sbjct: 598 -MPDIAQHSSERERVAVDAERDTDKLKKCEFMLDKVGEEFDGIISSVTSFGMFVELDNT- 655 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 ++GL+ +S L +DYY F ++ L+GE + + YR+GD V++RV VNMD+ IDF ++ Sbjct: 656 VEGLIRLSGLTDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDDYTIDFEMVDM 715 Query: 728 ERAPRNVG-------------KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK- 773 + G + ++ GD G G+ G++ RGE+ Sbjct: 716 KPRSDFRGVADAGFGARNGGGRKRGGFSRGGDTGAVVGRGGDKGRRGKESRAGDGRGERN 775 Query: 774 -KTKPKAAKKDARKAKKPSAK 793 + K + A++A+ A+ Sbjct: 776 DRGPSKGGRDGAKRAEHSGAQ 796 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 766 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 276/718 (38%), Positives = 399/718 (55%), Gaps = 9/718 (1%) Query: 19 PSREFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +++ ILE + +P + +ELA + + L +R LR ME +G + TR Y Sbjct: 2 VTKKEILEFMKAGAYRPLTLNELARIF-LPDGKGLGAFKRLLREMEEEGLIYQTRAARYG 60 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 LPE+ +LV G + H GY FL + + D+++ + +H D+V + Sbjct: 61 LPEQFNLVVGRLECHPRGYAFLVPDREGEPDVFIPPGCLGGAMHQDRVAVRLFPGSHGRT 120 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 RE +VRVL Q+VG + + FVVPDD RL+ ++IP ++ GAR G VVVEL Sbjct: 121 REGEVVRVLRRAHRQLVGTLYKKRRSVFVVPDDPRLTHQVVIPKGKLNGARNGEKVVVEL 180 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 T P T A G++VEVLG GM + + R + +P +P VE++ + + E Sbjct: 181 TTYPGPYTPAEGRVVEVLGPEDAPGMDMLVLCRRYGLPDGFPPEVEEEAENIPLTIRPEE 240 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 AGR DLR+ +VTIDGEDA+D DDAV E G +RL V IADVSYYVR + LDREA Sbjct: 241 LAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDREA 300 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTS+Y P +VIPMLP LSNG+CSLNP+ DRL + M V SKG + Y+ + +V+ Sbjct: 301 FQRGTSIYLPDRVIPMLPPRLSNGICSLNPEEDRLTLSVLMRVDSKGEVLEYELFPSVIR 360 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S ARLTY V L G + L + LE + L L + R ++G I F E K Sbjct: 361 SKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLPETKV 420 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + E R + +R ++IEE M+LAN + AR K + P ++RIH +P E + S Sbjct: 421 VLDEEGRTVDVYPAERGIGEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQPDPEKVAS 480 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 +LA LG + EP + E+LE+VA +P+ ++ ++LRS+KQA Y E HF Sbjct: 481 LEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARYAAERSEHF 540 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRYPDL +HR ++ E +G + + Sbjct: 541 GLASEYYTHFTSPIRRYPDLFIHRVLR-----ETVLKGAGLSPRRRARLEKLAQEAAAQS 595 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A E R+ D K FM+D+VG + G IS VT +G +V L++ ++GLVHV Sbjct: 596 SERERLAMEVEREAVDIKKVAFMVDKVGREYAGFISGVTNWGLYVMLENT-VEGLVHVRH 654 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 L +D+Y +D+ L+G +G+ +RLGD V VRV ++ E+ ++FSL++ AP + Sbjct: 655 LTDDFYFYDEKNYALVGRHTGKRWRLGDPVRVRVLRASVPEKLVEFSLLTEAEAPDKL 712 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 387/730 (53%), Positives = 509/730 (69%), Gaps = 3/730 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP+Q+REA++Y NPIPSRE+I L + S+ L + I +E + LRRRLR Sbjct: 1 MVVDPYQKREAKRYKNPIPSREYISSCLRTSQDLISQKNLEKKFGINNQESKKALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQ+++T +CY PE L +VKG VIGHRDGYGFLR E K+DL+LSSEQMK+CIH Sbjct: 61 AMERDGQVIYTSNRCYVAPESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD +LA + K R AR +++L P IVGRY+ + + FV+PDD+R +F I I Sbjct: 121 GDIILAHIVETHGKRRSSARFLKLLQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFS 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 +G +V V+L Q P R ++ G IVE+LG MGT +A++IALRTH IP +W + Sbjct: 181 AIKDDISIGSIVSVKLKQHPIRNSRVQGFIVEILGKEMGTNLAIEIALRTHLIPSLWSKE 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG--GGWRLWVA 298 V++QV + ++ + R DLR P TID EDARDFDDAV+C++K GW LWVA Sbjct: 241 VKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVA 300 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV+P+TPLD+ A RGTSVYFPS VIPMLPE +S LCSL P V+RLC++CEM+ Sbjct: 301 IADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMS 360 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 +S +G L YK YE ++ SH R TY +++ I GD LR +Y +K +E L L + + Sbjct: 361 LSKQGELISYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFN 420 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K + GI FE+ E KF+ ++ RI+ I Q RNDAHK IE CMILAN+++ARFVEK K Sbjct: 421 KDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVEKYK 480 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 P LFR HD+P + + S R L ELG L GG+ PE Y+ LL++V+DRP+ EM+QT+ Sbjct: 481 YPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMIQTV 540 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-HQGNTT 597 LLRSM QA+Y P+NRGHFGL+L SY HFTSPIRRYPDL LHR IKYLL K++ + N Sbjct: 541 LLRSMTQAVYSPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKSNYN 600 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + YS E+ ++G HCS+ ERRADEA RDV DWLKCDFM ++G + GVIS+VT F Sbjct: 601 FYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIGCILNGVISNVTTF 660 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 GFFVRL+ FIDGLVH++SL++DYY FD +G +L+G+S+ TY LGD ++V+V +VN++E Sbjct: 661 GFFVRLNQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNE 720 Query: 718 RKIDFSLISS 727 +KI+ SL S Sbjct: 721 KKIELSLYKS 730 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 262/713 (36%), Positives = 411/713 (57%), Gaps = 13/713 (1%) Query: 21 REFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R+ I+ + KP + +EL E I Q++ ++ L+ M RDGQ+V TR Y LP Sbjct: 4 RDKIINFMKADAYKPMTFEELKDEFKINKPRQVKRFKKILKKMTRDGQIVKTRYGYYGLP 63 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRR 137 ER++L GT+ GH GY FL + D++LS + + +H D+VL + + + Sbjct: 64 ERMNLQIGTIQGHPKGYAFLLPDKPGSPDVFLSPKSLNGALHNDKVLVRIHKEEMLNQKP 123 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E +VR++ S++VG + GFVVPDD R D+ I GA+ G VV ++T Sbjct: 124 EGEVVRIISRGMSEVVGTFDKSDRFGFVVPDDDRFFRDVFINKADANGAKNGQKVVAQIT 183 Query: 198 QRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 P T G+I++V+G+ G+ ++ + + + +P V++Q+ + E+ + Sbjct: 184 GWPDTPAKNPEGEIIKVIGNPSDPGVDIETIINKYGLSEDYPPKVKEQLEEVPNEISPKD 243 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 GR ++ LP VTIDG DA+D DDAV EK G L V IADVSYYVR TPLD+EA Sbjct: 244 YEGRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEA 303 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 R RGTSVY +V+PMLP LSN +CSLNP V+RL M + ++ +G + Y+ +V+ Sbjct: 304 RQRGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIANYRLTPSVIK 363 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S+ RLTY +V + G +++ E+Y + L E+ + + L + R + G I FE +E Sbjct: 364 SNYRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRERRFDEGAIDFEFDEPVV 423 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + + E +E+ R A KLIEE M+LAN A P ++R+H++P E +++ Sbjct: 424 VLDDQGKPESVEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQPDDEKVST 483 Query: 497 FRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 FR ++ G LP G + P ++ ++LE D + + TM+LRSMKQA Y E+ G Sbjct: 484 FREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQARYAAESLG 543 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGL+ Q Y HFTSPIRRYPDL +HR ++ ++ K+ + + ++ ++ Sbjct: 544 HFGLSFQYYTHFTSPIRRYPDLVVHRIMREIITKKDLKEARQKKL------QSKLEEIAY 597 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S+ E+ A EA R+ D+ ++M VG+ F G++SSVT FG F+ L +L ++GLVHV Sbjct: 598 QSSLREQEATEAERESVDYKMAEYMEQFVGDDFPGIVSSVTSFGIFIELPNL-VEGLVHV 656 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 SS+ +DYY FD+ L+GE + +TYR+GD V+V+V + ++ ++DF L+ Sbjct: 657 SSMTDDYYYFDEEKFALIGEQTRKTYRIGDEVKVKVVKTSKEDCQVDFELVED 709 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 283/804 (35%), Positives = 416/804 (51%), Gaps = 25/804 (3%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + + +P EL L + E E L L A+E DG ++ R Y LP Sbjct: 10 KERIYAFMREDAYRPLPEAELRTGLGLPESEGKE-LSAALAALETDGAVIRNRSGLYGLP 68 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE----GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 R++LV G + G+GF+ + + D+++ M T +HGD+V+A+ +++ G Sbjct: 69 SRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGTAMHGDRVVARVTPSEQPG 128 Query: 136 R-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 R RE I+R+L + IVG + GFV PD +++ D+ + GA+ G VVV Sbjct: 129 RAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDVFVLKKDFGGAKTGSKVVV 188 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+T+ P +R A G++VEVLG G+ V +R +++ +P V + A ++ Sbjct: 189 EITKWPEQRRSAEGRVVEVLGKTGDPGVDVLAVMRAYDLDEKFPPDVAEAAARCPKDPLP 248 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E AGR D RD P+VTIDGED +D DD VY ++ G + L V IADVS+YVR PLDR Sbjct: 249 EEYAGRRDRRDFPIVTIDGEDTKDIDDGVYA-YEKDGVFFLGVYIADVSHYVRAGEPLDR 307 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RGTSVY +VIPMLP+ LSNG+CSLN VDRL M CEM + G + Y+ V Sbjct: 308 EAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMEIGMDGEVRNYEIVPCV 367 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + RLTYT V +L G++ + LE L L +VL R RG I FE E Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNGDIRPMLETLRRLREVLRAKRHRRGSIDFELPEV 427 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K +A+ +E+ + +IEECM+ AN + AR +E +EP ++R+H+ P+ E I Sbjct: 428 KVKLDADGHPVALEKRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHETPAAEKI 487 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 +S+LA LGL L K P D ++L+ V +P+ ++ + LRSM+QA Y + Sbjct: 488 ERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQPEERIIGAVALRSMQQARYSTAS 547 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR ++ A + + Sbjct: 548 LGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIAAEKRERLRAL------LPEA 601 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S ER A EA R+ D K ++M VG ++GVIS VT FG FV L++ ++GLV Sbjct: 602 AEHSSARERIAIEAERETTDMKKIEYMAQFVGETYEGVISGVTAFGIFVELEN-GVEGLV 660 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS----SE 728 HVS++ NDYY + + ++GE +G YRLGD V + + ++ R +DF L Sbjct: 661 HVSTMVNDYYSYIEDQYAMVGERTGTRYRLGDTVTIIITRADVQARTLDFVLKDNGVYEP 720 Query: 729 RAPRNVGKTAREKAKKGDAGK---KGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 A K + K AG +R++ ++ +A G + + K Sbjct: 721 GAAAPAKKNTSPRPVKESAGAEQQHSSRRKKNERRPGPTSTAAGAGYGERRKKTRGAHGS 780 Query: 786 KAKKPSAKT-QKIAAATKAKRAAK 808 + AAA R + Sbjct: 781 SGSRAQKGDRAAHAAAESVPRKGR 804 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 287/791 (36%), Positives = 416/791 (52%), Gaps = 28/791 (3%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + + +P E+ L + EE+ L L A+E +G ++ R Y LP Sbjct: 10 KERIHAFMREDAYRPLPAAEVLKGLGLSDEEE-PLLSSALDALEEEGVIIRNRSGLYGLP 68 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE----GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 R++LV G + G+GF+ + + D+++ + T +HGD+V+A+ ++ G Sbjct: 69 SRMNLVVGRLSMSPKGFGFIIPDARENEEETDVFVPGAALATAMHGDRVVARVTPSESPG 128 Query: 136 R-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 R RE I+R+LV + IVG + GFV PD +++ DI + GA+ G VVV Sbjct: 129 RAREGEIIRILVRANTHIVGTFERSKAFGFVTPDSTKIGRDIFVLKKDFGGAKTGSKVVV 188 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+T+ P R A G+++EVLG G+ V +R +++ +P V A E Sbjct: 189 EITKWPEARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDLDENFPPDVAAAAAQCPENPLP 248 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E AGR D RD P+VTIDGED +D DD +Y +R G + L V IADVS+YVR PLD Sbjct: 249 EEYAGRRDRRDFPIVTIDGEDTKDIDDGIYA-YERDGEFFLGVYIADVSHYVRAGEPLDV 307 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RGTSVY +VIPMLP+ LSNG+CSLN VDRL M CEM + + G + Y+ V Sbjct: 308 EAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMQIGADGEVKSYEIVPCV 367 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + RLTYT V +L G++ + LE L L +VL R RG I FE E Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRRLREVLRGKRHRRGSIDFELPEI 427 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K +A +E+ + +IEECM+ AN + AR +E +EP ++R+H+ P +E I Sbjct: 428 KVKLDAAGHPIALERRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHEAPVSEKI 487 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 F+S+LA LGL L K RD ++L+ V P+ ++ + LRSM+QA Y + Sbjct: 488 ERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAPEERIIGAVALRSMQQARYATAS 547 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR ++ A + + Sbjct: 548 LGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIPAEKRERLRTV------LSEA 601 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S ER A EA R+ D K ++M VG F+GVIS VT FG FV L++ ++GLV Sbjct: 602 AEHSSARERIAVEAERETTDMKKIEYMAQFVGETFEGVISGVTAFGIFVELEN-GVEGLV 660 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE-RAP 731 HVS++ NDYY + + ++GE +G YRLGD V + + ++ R +DF L + P Sbjct: 661 HVSTMVNDYYSYVEEQYAMVGERTGARYRLGDAVTIIITRADVQARTLDFVLKDNGVYDP 720 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPS 791 V +A+ KA + KRR KK G++K +P A A +A++ Sbjct: 721 DTVKASAKPKAPQEKPDASSEKRRPRKKK----------GDRKHEPIIADTQASRAERRK 770 Query: 792 AKTQKIAAATK 802 K Sbjct: 771 KTRGAHGTGGK 781 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 280/766 (36%), Positives = 418/766 (54%), Gaps = 18/766 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R+ +L ++ P S D+L +L +G+ L L + M +DG LV TR LP Sbjct: 7 RQDVLTYMESHATHPVSYDDLGRDLRYKGKG-LGALWTEIELMIKDGLLVKTRFNTLGLP 65 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + LV G + + GYGF+ + DL++ + + ++ D V+A+ GRR Sbjct: 66 RAMGLVTGRLQVTQKGYGFVVPLEKTEEGDLFIPAMHLSGAMNEDLVIARVSDHGYGGRR 125 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E +++R+L + VG + GFV PD+ + DI + + AR G VVV++T Sbjct: 126 EGKVIRILERAHERFVGTFTRSGDFGFVTPDNRHIGQDIYVRRKDFLNARNGDKVVVKIT 185 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 P R KA G I E+LG G+ + ++ ++P +P+ V++ + + +P++ Sbjct: 186 VWPNGRQKAEGTITEILGKKGDVGIDIISIIKDKDLPLDFPKEVKEAAQLVPQVIPKKDL 245 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR+D R P++T+DG D++D DDA+Y EK RG + L V IADVS+YVRP LDREA Sbjct: 246 KGRLDRRKWPIITVDGVDSKDLDDAIYAEK-RGEDYFLGVYIADVSHYVRPRGELDREAY 304 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMS 376 RGTSVY +V+PMLP +LSNG+CSLN +RL M CEM +S G++ Y +V++ Sbjct: 305 ARGTSVYLVDRVLPMLPPLLSNGICSLNEGEERLTMSCEMVISGKTGKVLSYDIAPSVIA 364 Query: 377 SHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S R+ Y V IL D LRE+Y+ +V LE + L +L K R RG I FE E K Sbjct: 365 SRHRMNYPDVAKILTDRDTALREKYSDIVPMLETMEELCTILHKKRVRRGAIEFEIPEVK 424 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I + ++R + R A +IEE M+ AN + A + K P ++R+HD P + + Sbjct: 425 VILDEKKRPIDVHLRHRTIAEMMIEEFMLAANETVAAHMTKHHYPFIYRVHDVPDEDRMQ 484 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 S ++A+ G L K P+ L V +P+ M+ T+ LRSMKQA+Y EN GH Sbjct: 485 SLSKIMAQFGTVLKIEGKMRPKVLQMALRKVKGKPEEGMISTLALRSMKQAVYQTENVGH 544 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA + Y HFTSPIRRYPDL +HR +K + G +++ + H Sbjct: 545 FGLAAKDYTHFTSPIRRYPDLLVHRLLK------EQRTGQKLSKKEKENLNDKLSLMASH 598 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ER A EA R+ + ++ML VG F G IS VT FG FV+L++ I+GLVH+S Sbjct: 599 ASTRERLAIEAERETDELKMTEYMLPYVGQEFDGTISGVTSFGMFVQLEN-GIEGLVHIS 657 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE---RAPR 732 SL +DYYR+D+ L+GE G++YRLG V ++V V+++ERKIDF L E A + Sbjct: 658 SLLDDYYRYDEEHFALVGEHGGKSYRLGSPVRIKVFHVSVEERKIDFILPEFETFVTARK 717 Query: 733 NVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPK 778 + +++ K KKGG+ + + + +G + K K Sbjct: 718 ETVPSDKKRTPKKQTVKKGGRNKLASQTQKRG-GTRQKGSQHGKNK 762 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 259/758 (34%), Positives = 389/758 (51%), Gaps = 60/758 (7%) Query: 20 SREFILEHL--TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 R+ IL L K P ELA+ L+I Q E L L A+ +G++ +++ Y Sbjct: 8 QRKQILTELMDDKAYVPMKAKELAILLNIPK-SQREDLMEVLNALVAEGRIGVSKKGKYG 66 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP--------- 128 E V G GH G+GF+ VEG + D+++ ++ +HGD+V Sbjct: 67 KAETFS-VNGIFSGHPKGFGFVTVEGMEQDVFIPEDKTGAALHGDRVQIVVEHDSRMSGS 125 Query: 129 --LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA 186 R E ++RVL +IVG Y GFV+PD+ +L+ DI IP MGA Sbjct: 126 RSGMGSGGRRAEGAVIRVLEHANQEIVGYYQKNKNFGFVIPDNQKLAKDIFIPQGCDMGA 185 Query: 187 RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 G VVV++T + + K G++ E++G G + +R + +P +PQ V +++ Sbjct: 186 VTGHKVVVKITDFGSEKHKPEGRVTEIIGHVNDPGTDILSIVRAYGLPEAFPQEVMEEIE 245 Query: 247 GLKEEVPEE-----------------------------------AKAGRVDLRDLPLVTI 271 + E+V +GR+DLR L VTI Sbjct: 246 DIPEDVTVPGQPYVPGQTDIPGQPAKPGSPYGISDLTSHDGWGGELSGRLDLRGLQTVTI 305 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DGEDA+D DDAV + G + L V IADVS+YV+ +PLDREA R TSVY +VIP Sbjct: 306 DGEDAKDLDDAVTICRDNQGHYILGVHIADVSHYVKEGSPLDREAFKRSTSVYLVDRVIP 365 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL- 390 MLP LSNG+CSLN DRL + C M V +G + ++ E V+ R+TYT V I+ Sbjct: 366 MLPHKLSNGICSLNAGTDRLALSCIMEVDGQGTVLDHRIAETVIHVDRRMTYTAVNAIVT 425 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 D+ + +Y V + + L +L ++R +RG I F+ E+K + + + + I+ Sbjct: 426 DRDEAVMAEYEDFVPMFDCMKELADILRESRRKRGAIDFDFPESKIVLDGQGKPLEIKPY 485 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +RN A ++IE+ M+LAN + A P L+R HD P E + + + G + Sbjct: 486 ERNAATRIIEDFMLLANETVAEDYYWQSIPFLYRSHDNPDPEKMKQLGTFINNFGYFIKM 545 Query: 511 GN-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 + + P++ +LL+ + P+ +L + LRSMKQA Y + GHFGLA + Y HFTSP Sbjct: 546 QHGEIHPKELQKLLDKIEGTPEEALLSRLTLRSMKQAKYTTQCSGHFGLATRYYTHFTSP 605 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR IK L +G ++ HY + + ++ S ERRADEA R+ Sbjct: 606 IRRYPDLQIHRIIKETL------KGGLSDKRAGHY-EKILPEVAVQTSALERRADEAERE 658 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 KC++M +G F G IS VT +G +V L + ++GLV +S LD+DYY FD+ Sbjct: 659 TDKLKKCEYMSRFIGQDFDGAISGVTNWGLYVELPNT-VEGLVRMSDLDDDYYIFDEQHY 717 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 L+GE + +TY+LG + V V + + R +DF L Sbjct: 718 ELIGEMTKKTYKLGQPIRVTVSSTDRLLRTVDFILAKD 755 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 277/725 (38%), Positives = 400/725 (55%), Gaps = 17/725 (2%) Query: 24 ILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 +L+ L+ R KP S ++ + + +++ L R L ++ +G + R+ ++LP Sbjct: 8 LLKLLSQNRGKPLSGRQIVSQFQLSRDQRQHAL-RMLDSLADEGLVRRVRKGLFSLPRSS 66 Query: 83 DLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 ++V G V HR GYGF+ E + D+++ + M+ + GD+V + + R G E R+ Sbjct: 67 EMVVGKVSVHRQGYGFVIPEAAGQADVFIPARYMREVMDGDRVAVRVQRSSRGG-YEGRV 125 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 +RVL IVG Y G G V+P D LS I++ A G +VVV + Q P Sbjct: 126 LRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSPAPGDAHAGDLVVVSIAQYPG 185 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 RR G +VEVLGD + + A +P + A +Q + V EE AGR Sbjct: 186 RREPPRGVMVEVLGDPADPQVEILAAAYKFNLPREFSTATLEQARSIAPVVREEDLAGRE 245 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLR VTIDGE A+DFDDAV ++ GG RLWVAIADV +YV P +P+DR+A+ RGT Sbjct: 246 DLRSTLFVTIDGETAKDFDDAVAVSREPGGCMRLWVAIADVGHYVAPDSPIDRDAKERGT 305 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVYFP +PMLPE LSNG+CSLNP VDRL + EM +G + +F+ AV+ S ARL Sbjct: 306 SVYFPGSCLPMLPEALSNGICSLNPGVDRLVLTAEMLFDKQGVMLESRFFHAVICSKARL 365 Query: 382 TYTKVWHILQGDQDLREQY-APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 TY +V +L PL+ L + L L R RG + F+ E + + + Sbjct: 366 TYREVADVLAAGAIHNPALSDPLISQLHHMSELASRLQAMRFRRGSLDFDLPEPEIVLDL 425 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + R ++I + +R AH+LIEE M+ AN + A+F+ P L+RIH+ P E + +F++ Sbjct: 426 QGRPDQILRAERTVAHRLIEEFMLAANEAVAKFLSDRNIPLLYRIHESPEVEKLFAFQTF 485 Query: 501 LAELGLEL-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 LA L + L + P +LE+V DRP+ M+ LLRSMKQA Y +N GHFGLA Sbjct: 486 LAHLNIGLVVTDDSVSPTVLQGVLETVRDRPEERMVNQFLLRSMKQARYSSDNLGHFGLA 545 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Y HFTSPIRRYPDL +HR + L+ + + +LG S Sbjct: 546 SDCYCHFTSPIRRYPDLVVHRILSRALSTSKRSSATV-----------NLEELGDLTSQK 594 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ERRA EA RD+ +C FM D+VG VF ++ V FG FV L D+F++GLVHV++L + Sbjct: 595 ERRAMEAERDIVALRRCQFMADKVGQVFDACVADVQPFGIFVELKDVFVEGLVHVATLTD 654 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAR 739 DYY FD+ RL+G+ + +R+G+ V V++ VN++ R++DF L + R Sbjct: 655 DYYEFDEELHRLVGQRRRKIFRIGEVVTVQLVKVNLERRELDFELQGMRTDMASATAGRR 714 Query: 740 EKAKK 744 KK Sbjct: 715 RSKKK 719 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 251/704 (35%), Positives = 389/704 (55%), Gaps = 12/704 (1%) Query: 21 REFILEHL-TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ I + + P E+A+ L I EQ + L+ L ++ +G++ ++R Y+ Sbjct: 55 KKVIYDFICDDFYVPMKIKEIAMVLQITK-EQRKELQEVLDSLVEEGKISLSKRGKYS-K 112 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + + GT + G+GF+ VEG+++D+++ +E + GD+V G+ R+E Sbjct: 113 GQAKRIMGTFQANIRGFGFVMVEGQEEDIFIPAENVNGAFQGDEVECIITGSPSGRRQEG 172 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +IV ++ + +++VG Y GFV PD+ R DI IP + + A G VVVELT Sbjct: 173 KIVGIISHQVTKVVGLYEKSKSFGFVRPDNQRFLKDIYIPAGKELHAMTGHKVVVELTSY 232 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K GKI+E+LG G + ++ +IP +P+ V Q + +EV E AG Sbjct: 233 GGEHMKPEGKIIEILGHVNDPGTDILSIVKDFDIPTEFPEKVLNQAVRVGKEVSEADMAG 292 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+DLRD +VTIDGEDA+D DDAV G +RL V IADV+ YV+ + LD EA R Sbjct: 293 RMDLRDWQMVTIDGEDAKDLDDAVSVV-MDGENYRLGVHIADVTNYVQERSALDWEALKR 351 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY +VIPMLP+ LSNG+CSLN +RL + C MTV+ +G + ++ E V+ Sbjct: 352 GTSVYLADRVIPMLPQTLSNGICSLNAGENRLTLSCIMTVTPEGEVVDHQIAETVICVDK 411 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R++Y V +L GD + E V + + L ++ + R +RG I F+ E K I + Sbjct: 412 RMSYNGVAKVLAGDAEALEADREFVPMILRMKELSDIIRERRAKRGSIDFDFPETKIILD 471 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + R I+ RNDA K+IE+ M+LAN + A + P L+R HD P E I + Sbjct: 472 EKGRPVEIKPYDRNDATKIIEDFMLLANETVAEEYFWREIPFLYRTHDVPDEEKIRKLGT 531 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 + G L N+ P++ +LL V P+ ++ + LRSMKQA Y EN GHFGLA Sbjct: 532 FINNFGYNLHVRNEVRPKEIQKLLCKVEGTPEEPLISRLALRSMKQAKYTTENTGHFGLA 591 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 + Y HFTSPIRRYPDL +HR IK L + + + ++ CS Sbjct: 592 AKYYTHFTSPIRRYPDLQIHRIIKENLRG-------RLTGERMEHYRKILTEVASQCSQR 644 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER A+E+ R+V K ++M +G ++GVIS VT +G +V L + I+GL+HV+ + + Sbjct: 645 ERTAEESEREVVKLKKAEYMQAHIGGEYEGVISGVTKWGVYVELPNT-IEGLIHVADMRD 703 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 D+Y F + ++GE +G+T++LG +V++RV + +R ++F Sbjct: 704 DHYNFIEETYEMVGEHTGKTWKLGQKVQIRVTDADRLQRTVNFE 747 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 736 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 275/752 (36%), Positives = 405/752 (53%), Gaps = 15/752 (1%) Query: 19 PSREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 RE IL + R +P + EL V L IE E L ++E++G +V TR+ Y Sbjct: 1 MDREEILTLMRARSYRPLTASELMVALGIEDE---GAFMELLHSLEQEGYIVRTRKDKYG 57 Query: 78 LPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 LPE++ LV G + GY F+ + ++DLY+ + + +HGD VLA+ L R Sbjct: 58 LPEKMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMHGDLVLARVLPGTTGRR 117 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 +E I+RVL ++VG + + FV+PDD+RL DI+IP + AR VVVE+ Sbjct: 118 QEGEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPAGASLEARDRDKVVVEI 177 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 T+ P R G++++VLG G+ V ++ + + +P V ++ + ++ Sbjct: 178 TRWPEARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREAEEIPRDLEPGE 237 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLRD LVTIDG DARD DDAV E++ G + L V IADVS+YVR PLDREA Sbjct: 238 LAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGRPLDREA 297 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 NRGTSVYF +VIPMLP LSN +CSLN DRL + MT+S G + Y+ + +V+ Sbjct: 298 FNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKDYELFPSVIR 357 Query: 377 SHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 R+TY V IL+ D +L E+Y LV + + L +L + R RG I F+ EAK Sbjct: 358 VRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAIDFDFPEAK 417 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + + I R A +IEE MI+AN AR + + PA++R+H++P+ + + Sbjct: 418 VKLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEEPAPDKLE 477 Query: 496 SFRSVLAELGLELPGG--NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + LA GL + + PR + E+L +V RP+ ++ T++LRSM A Y + Sbjct: 478 ALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHARYAGDCL 537 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y HFTSPIRRYPDL +HR ++ + + + + Sbjct: 538 GHFGLASPYYCHFTSPIRRYPDLVVHRILRETWSPAGFSAERMAQLSAF------VALAA 591 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 S E+ A+EA R+ D K +M VG F GVIS V +GFFV L++ ++GLVH Sbjct: 592 VQASEREKLAEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVELENT-VEGLVH 650 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 VS+L +DYY + + L+GE +G++YR+G V V V V++D R++DF L+ E Sbjct: 651 VSTLTDDYYHYQEDQLALVGEHTGKSYRIGQPVTVLVTRVSVDARQVDFELVKPEEEKTG 710 Query: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEP 765 A K K + + G K + Sbjct: 711 PVGGAGAKVKGHPVKAREREAGPSGGKARKKA 742 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 276/797 (34%), Positives = 410/797 (51%), Gaps = 15/797 (1%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E +LE++ E +P++ EL L + R L ME G LV T+ YALP Sbjct: 3 KERLLEYMRSEEYRPSTVQELCERLGVTSAADFRAFVRLLNEMEDAGDLVRTKNNRYALP 62 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKG--- 135 E+++ + G + GYGF+ E + D+Y+ + + GD+VL + KG Sbjct: 63 EQMNFIAGRLQLKARGYGFVIPENEAEADIYILQTALNGAMSGDRVLVRLREERGKGAQA 122 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 RE IV++L +IVG+ A FV P D R D+ +P D + A G VVVVE Sbjct: 123 HREGEIVKILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVFVPKDAVGNAHDGQVVVVE 182 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 LT PT VG++VEVLG G+ + +R + +P +P+ V + E+ Sbjct: 183 LTSYPTATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLPEAFPEDVLADAERIPLEIDPA 242 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 A R D R +VTIDG+DA+D DDAV+ ++ G + L V IADV YYV+ ++PLD+E Sbjct: 243 EIARRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYELGVHIADVGYYVKENSPLDKE 302 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTSVY +VIPMLP LSN +CSLNP+VDRL M C M + +GR+ ++ +V+ Sbjct: 303 AFRRGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMSCVMEIDGQGRVVSHEIVPSVI 362 Query: 376 SSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + R+TY V IL+ D++LR +YAPLV E + L +L R RG I F+ +E Sbjct: 363 RTAERMTYNDVRKILEDEDEELRARYAPLVPMFERMRELALILRDKRMRRGAIDFDFDEI 422 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K N IE R+ A ++IEE M+ AN + A P ++R+HD+P + I Sbjct: 423 KVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAEHFHWLGVPFIYRVHDEPDPDKI 482 Query: 495 TSFRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 L G + G G K PR E+L V + +A M+ ++LRSM+QA Y PE Sbjct: 483 IHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKREARMISMVMLRSMQQAKYRPEC 542 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR I+ +L + + E + + Sbjct: 543 TGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLTRGSLSPQREA------HLREFVAEA 596 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 + S ER A EA R+V ++M + F G+IS V FG FV+LD+ ++GL+ Sbjct: 597 SRQSSERERIAQEAEREVDQLKMVEYMQAHIDEEFDGIISGVVPFGLFVQLDN-GVEGLI 655 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 H+S L +DYY + L+GE + + +R+GD V V V ++ +IDF L+ R Sbjct: 656 HISELSDDYYVLHERQMALIGERTRRVFRIGDPVRVVVIRAVKEDLRIDFGLVEHLREAT 715 Query: 733 NVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSA 792 VG + +R ++ ++ R E+ K A++D + + Sbjct: 716 YVGGEGPGAIVYDEDLTPKERRETERRRREAASRASGRRERDDKRHRARRDRKGEARAGV 775 Query: 793 KTQKIAAATKAKRAAKK 809 + + + AA Sbjct: 776 RLSDWNDGEEERSAALG 792 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 264/713 (37%), Positives = 402/713 (56%), Gaps = 14/713 (1%) Query: 20 SREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 +R+ IL+ + K KP S EL I+ ++ + + +E++G++V TR + L Sbjct: 3 NRDSILDCMHKESYKPLSYHELKAVFGIKDVDEDIKFSKIVGKLEKEGEIVKTRAGKFGL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-R 136 PE ++LVKG + + G+G L + ++++ +++ +H D+V+ + G R Sbjct: 63 PEMMNLVKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMHNDRVMVRIQEKGYNGQR 122 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E ++R+L T ++VG + + VVPDDSR + I + + A+ G V+V + Sbjct: 123 PEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASRKWKAKEGDKVLVRI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + P R A GKIVEVLG G+ + + + H + +P V ++ + EV E Sbjct: 183 SSWPERDKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVMEEARNVAVEVNAEE 242 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 + R DLR+ +VTIDGEDA+D DDAV EK G ++L V IADVS+YV+ LDREA Sbjct: 243 ISRRRDLREWRMVTIDGEDAKDLDDAVSIEKTSKG-YKLGVHIADVSHYVKEDCKLDREA 301 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTSVY +V+PMLP LSN +CSLNPQV+RL + C M + S G++ Y+ ++V+ Sbjct: 302 FKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDIDSWGQVVDYEIVKSVIQ 361 Query: 377 SHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 + R+TY+ V IL L+E+Y LV+ + L +L ++R RG + F+ E+K Sbjct: 362 INERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRRSRLNRGMLDFDFPESK 421 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I + E +++ +R LIE+ MI AN A + P L+R+H+KP EAI+ Sbjct: 422 VIVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHLHNLGLPVLYRVHEKPDEEAIS 481 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 VLA G ++ G+K P + +L + +P+ +M+ M+LRSMK A Y PE RGH Sbjct: 482 ELNKVLAVFGHKIK-GHKVSPMLFQGILADIKGQPEEQMISLMILRSMKHASYLPEPRGH 540 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA Y HFTSPIRRYPDL +HR + LL T ++M G+ Sbjct: 541 FGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGG-------MTTRKKSSLEKKMTIYGEQ 593 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S+ E +A+EA R++ D K +M VG+ F ISSV FGFFV L++ ++GLVH+S Sbjct: 594 SSLQEMKAEEAERELLDVKKAQYMSQFVGDEFSARISSVQAFGFFVALENT-VEGLVHIS 652 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 S+ +DYY F L G SG+ + +GD+V V++ V++DE KIDF L+ E Sbjct: 653 SIADDYYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDVDEGKIDFELLQDE 705 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 261/744 (35%), Positives = 386/744 (51%), Gaps = 46/744 (6%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGT 88 K P ELA+ L I Q + L + L + +G++ +++ Y PE V G Sbjct: 19 DKSYVPMKAKELAMLLGIPK-SQRDELTQVLDYLVSEGRIGISKKGKYGKPEVFS-VNGI 76 Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--RREARIVRVLV 146 GH G+GF+ VEG + D+++ ++ +HGD+V DR G R E +++VL Sbjct: 77 FCGHPKGFGFVTVEGMEQDVFIPEDRTGAALHGDRVQIVVESQDRGGGRRAEGSVLKVLE 136 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++VG Y G GFV+PD+ ++S DI IP MGA G VV + + K Sbjct: 137 HANKEVVGYYQKSKGFGFVIPDNQKISKDIFIPQGCDMGAVTGHKVVARIKEFGDANHKP 196 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV-------PEE---- 255 G + E+LG G + +R + +P +P V +V G +EV EE Sbjct: 197 EGVVTEILGHVNDPGTDILSIVRAYGLPEEFPPEVMDEVEGCPDEVAVPGMTRDEETWDG 256 Query: 256 ---------------AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 AGR+DLR L VTIDGEDA+D DDAV + GG+ L V IA Sbjct: 257 PYGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTLCRNGQGGYILGVHIA 316 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ PLD+EA RGTSVY +VIPMLP LSNG+CSLN DRL + C M + Sbjct: 317 DVSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMELD 376 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDK 419 +G + +K E V+ R+TYT V I+ GD+ + +Y V + + +L + Sbjct: 377 DQGNVLDHKIAETVIHVDRRMTYTAVNAIVTDGDEAVMAEYEGFVPMFMLMKEVSDILRE 436 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 R++RG I F+ E+K I +A+ + I+ +RN A K+IE+ M+ AN + A Sbjct: 437 KRKKRGAIDFDFPESKIILDAQGKPLEIKPYERNAATKIIEDFMLAANETVAEDYFWQSL 496 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTM 538 P L+R HD P E + + + G + + P++ +LL+ + P+ +L + Sbjct: 497 PFLYRTHDNPDPEKMKQLGTFIHNFGYFIRLQQGEIHPKELQKLLDKIEGTPEEVLLSRL 556 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 LRSMKQA Y GHFGLA + Y HFTSPIRRYPDL +HR IK L G + Sbjct: 557 TLRSMKQAKYTTLCSGHFGLAARYYTHFTSPIRRYPDLQIHRIIKESLKGGLGDK----- 611 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 + + + S ERRA+EA R+ KC++M +G F GV+S VT +G Sbjct: 612 --RAGHYEAILPGVAMQTSALERRAEEAERETDKLKKCEYMSRFIGQEFDGVVSGVTNWG 669 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 +V L + ++GLV +S L +DYY FD+ L+GE + +T++LG + V+V + + R Sbjct: 670 LYVELPNT-VEGLVRISELRDDYYIFDEQHYELVGEMTRKTFKLGQPIRVQVASTDRLLR 728 Query: 719 KIDFSLISSERAPRNVGKTAREKA 742 +DF L PR+ ++A + A Sbjct: 729 TVDFIL------PRDWDRSAGKGA 746 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 302/748 (40%), Positives = 442/748 (59%), Gaps = 25/748 (3%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M+ +P + Y NPIP REFIL K +K +R+++A L ++ EQ E LRRRLR Sbjct: 1 MNLNPTAPLSSPIYDNPIPGREFILSLFGKMKKNLNREQIAHALELKNAEQKEALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQL+F++ + Y + ++ LV G + H DG+GF+ + DL+++ Q+ Sbjct: 61 AMERDGQLMFSQHKGYQVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFE 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD V A K R ++++++ KT+ + G + +V D+++ + + Sbjct: 121 GDIVQILQEAASHK-RSNNKLIKIIEHKTTHLAGILKRQGTDYVLVADNTKCPQKVQVAQ 179 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 Q+ +G V ++TQ PT R +I EVLG GM +ALR H + W + Sbjct: 180 CQLANTSVGQYVNTKITQYPTFRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSKD 239 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q + L EV E+ K RVD R P VTIDGEDA+DFDDAVYCE+ G WRL VAIA Sbjct: 240 LLAQASSLGNEVTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAIA 299 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+P+ LD EA+ R TS+Y P QV+PMLPE LSNGLCSLNP DRL +VC+MT+S Sbjct: 300 DVSHYVKPNDVLDIEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTIS 359 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-----QDLREQYAPLVKHLEELHNLYK 415 G++T F E ++ SHARLTYT+ ++ + L E A + ++ LH LY Sbjct: 360 QDGQVTQANFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAELNADVSPLIKNLHYLYL 419 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L AR+ RG I F+++E K N ++I IE +RNDAH++IEE M+ AN+ A+F++ Sbjct: 420 DLSAARKLRGAIDFDTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTAQFLD 479 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 K + P LFR+H P + + + R++LAE L+L GG+KP P DY +LL +++ R DA ++ Sbjct: 480 KHQIPGLFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSDASVI 539 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE------ 589 +T+LLRS QA Y N+GHFGLA +YAHFTSPIRRY DL HRAI+ + + Sbjct: 540 RTLLLRSQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIRAKIQAKQQNGLQ 599 Query: 590 -----------QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 + + Y Y++E + L HCS R+A++ +R+V LKC + Sbjct: 600 RAISFLNVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDISREVESALKCSY 659 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 M +G+ F IS V+ GFFV LD ++GLV VSS + F+ Q+ +S Q Sbjct: 660 MEKYLGDTFTATISGVSSAGFFVELDCTGVEGLVPVSSFSQGEFVFNAAKQQW--SNSKQ 717 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + +G+RV V ++++++ +RK+ FSL S Sbjct: 718 KFTIGERVNVTLKSIDLRQRKMSFSLAS 745 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 318/772 (41%), Positives = 446/772 (57%), Gaps = 41/772 (5%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 + + + + + GTV GHRDG+GF+ + + D+YL +M+ +H D+V + Sbjct: 3 IKKMNPRAKVADMNEEILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRI 62 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 D +GR E R+V ++ I+GR+ E+GV V P+D R D+LIP + A+ Sbjct: 63 ARHDHRGRPEGRVVEIVERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLIPSNATGAAKP 122 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 G VVVVELT+ P + VG+I EVLG+ GM ++IA+R + +P+I+ A +Q L Sbjct: 123 GQVVVVELTEAPALFGQPVGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKAL 182 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG---WRLWVAIADVSYY 305 E+V R+DL D+PLVTIDGEDARDFDDAVYCE + G WRL VAIADVS+Y Sbjct: 183 PEKVRPADYKHRIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHY 242 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V + +D +A +R TSVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+M ++++G + Sbjct: 243 VTTGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEI 302 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKAREER 424 Y+FY AVM SHAR TYT+V IL + + V+ L L+ +++ L KARE R Sbjct: 303 HAYQFYPAVMHSHARFTYTEVAAILANTRGPEAAKRKERVQDLLNLYGVFQSLLKAREAR 362 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + FE+ E + + + RIE+I RNDAHKLIEE M+ AN+ +A F++++ + LFR Sbjct: 363 GAVDFETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFR 422 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 +HDKPS E R+ L +G+ + P +++ ++ + DRPD++ + TMLLRSM Sbjct: 423 VHDKPSLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMM 482 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 QA Y PE GHFGLA ++Y HFTSPIRRYPDL +HR IK L + G Sbjct: 483 QAFYTPEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEA 542 Query: 605 SMEE------------------------MLQLGQHCSMAERRADEATRDVADWLKCDFML 640 M + G HCS ERRADEA+RDV WLKC +M Sbjct: 543 KMAKRLSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKYMR 602 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 + +G F G +SSVT FG FV LD ++++GLVH++ L DY+RFD+ Q L GE SG Y Sbjct: 603 EHLGEEFAGTVSSVTTFGVFVTLDAMYVEGLVHITELGGDYFRFDEARQELRGERSGVRY 662 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKK 760 +G RV V+V V++D R+IDF L+ G + +G A +G RR+ Sbjct: 663 GIGARVRVQVSRVDLDGRRIDFRLVRDGED----GLVQTPRGGRGQAKDEGRGRRE---- 714 Query: 761 VNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812 R K +++DA+ + A+A + RA + + A Sbjct: 715 -----SRDERSAGGYADKWSRRDAKANRAQRNAAAGPASAPEPDRAKQGRKA 761 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 211/713 (29%), Positives = 363/713 (50%), Gaps = 26/713 (3%) Query: 22 EFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I + L K + +++ +L+I + E + L+ + G V ++ + L + Sbjct: 15 QLISDVLEKSNNEALNYKQVSAKLNITDPDSRETILDILKQQTQKGVFVEAQKGKFKLKD 74 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + G V DG F+ + + D+++S+ ++ +HGD+V + E Sbjct: 75 LKTFIIGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEG 134 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +V ++ + +G FV+ DD ++ DI +P + GA+ V V++T Sbjct: 135 EVVEIIERAKTDFIGVIKISDRFAFVIADDKKMMQDIFVPLSDLNGAKNRQKVQVKITDW 194 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P +G ++ +LG+ ++ L + P +P VE++ + E++ + Sbjct: 195 PEGVKNPIGTVITILGEQGENNTEMNAILAQYGFPLQFPPEVEKEANAIPEQITADEIKD 254 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R+ TID DA+DFDDA+ +K G + + V IADV++YV P++ LD+EA R Sbjct: 255 RRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNSALDKEAYGR 314 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY +VIPMLPE LSNG+CSL P D+LC + +K + F V+ S Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIINEWFGRTVIHSDR 374 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R +Y + +++ + + +L+ L +L + + G ISFES E KF + Sbjct: 375 RFSYEEAQEVIENKT------GDFSEEILKLNELAYILRDKKFKNGAISFESTEVKFKLD 428 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAI 494 + + + +R DAHKLIE+ M+LAN A F+ K + ++R HD P+ E + Sbjct: 429 EDGKPLGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRSHDSPNLENL 488 Query: 495 TSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 +F A G ++ +K + L+E V + + +L + +RSM +A+Y + Sbjct: 489 GNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAVYTTKKT 548 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H+GLA Y HFTSPIRRYPD+ +HR + L KE+ EE Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKS------------ADAEEYEIAA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S E+RA +A R + + +++ + +GN++KG+IS VT +G +V L D +G++ Sbjct: 597 SHSSTMEKRAADAERASIKYKQAEYLEENIGNLYKGIISGVTEWGMYVELADNKCEGMIR 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + L +D+Y D+ ++G+ +TY+LGD V+V+V+ V++ +R+IDFSLI Sbjct: 657 LRDLSDDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLIQ 709 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 254/692 (36%), Positives = 382/692 (55%), Gaps = 13/692 (1%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P EL + L ++ E++ L + L ++ +G++ ++R Y+ E V G H+ Sbjct: 33 PMKIKELCIVLGVKKEDR-PQLEQILLDLQAEGRITLSKRGKYSKSEIKKTV-GVFTAHQ 90 Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIV 153 G+GF+ VEG DD+++ +E + +H D V R+E ++V V+ Q+V Sbjct: 91 RGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISPVTTGRRKEGKVVSVIERGMKQVV 150 Query: 154 GRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEV 213 Y GF VPD++R DI IP ++ GA G VVVE+T + K GK+VE+ Sbjct: 151 CTYEASDNFGFAVPDNTRFGTDIFIPKERSKGAMSGHKVVVEITSYGKKGKKPEGKVVEI 210 Query: 214 LGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDG 273 +G G + ++ +++P + + + QV + ++V AGR+DLRD +VTIDG Sbjct: 211 IGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQNVAKDVTPADMAGRMDLRDWMMVTIDG 270 Query: 274 EDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPML 333 EDA+D DDAV G + L V IADVS YV+ + LD EA RGTSVY +VIPML Sbjct: 271 EDAKDLDDAVSL-YMDGDNYVLGVHIADVSNYVQEHSALDVEALKRGTSVYLVDRVIPML 329 Query: 334 PEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QG 392 P LSNG+CSLN DRL + C MT++ KG + +K E V+ ++ R+TYT V IL Sbjct: 330 PRELSNGICSLNEGCDRLALSCIMTINKKGEVIDHKIAETVIKTNRRMTYTNVKKILADK 389 Query: 393 DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQR 452 D + E+Y LV E++ L +L K R +RG I F+ E K + + + I+ R Sbjct: 390 DAAVIEEYKELVPMFEKMAELAAILRKKRMKRGSIDFDFPETKVVLDEDGHPIDIKPYDR 449 Query: 453 NDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG- 511 N A KLIE+ M++AN + A + P ++R HDKP +E I + + G L G Sbjct: 450 NVATKLIEDFMLIANETVAEDYFWQEIPFVYRTHDKPDSEKIAKLSTFINNFGYTLHIGA 509 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 ++ P++ +LL V + ++ + LRSMKQA Y GHFGLA Y HFTSPIR Sbjct: 510 DEVHPKELQKLLMKVDGTDEESLISRLTLRSMKQARYTTACTGHFGLAANYYCHFTSPIR 569 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 RYPDL +HR IK + +G + HY + + + S ERRA+EA R+ Sbjct: 570 RYPDLQIHRIIK------ENIRGRMNDNRREHY-ESILDAVAKQASETERRAEEAERETV 622 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 KC++M + +G F+GVIS VT +GFFV L + ++GLV V+ L +D+Y F + L Sbjct: 623 KLKKCEYMSNHIGECFEGVISGVTEWGFFVELPNT-VEGLVRVTDLTDDFYEFYEDTYEL 681 Query: 692 MGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 G ++ + Y+LG +++V V++ + R IDF Sbjct: 682 AGTATNKRYKLGQKIKVVVDSADKIMRTIDFK 713 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 245/713 (34%), Positives = 383/713 (53%), Gaps = 12/713 (1%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E ILE + K KP ++++LA +I+ ++ E L ++R G + ++ + Sbjct: 3 KEKILEVI-KNSKPQTKEDLAKVFNIKKRDR-ENFYFLLENLQRQGLVFEDKKAKLIFVD 60 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 G + + G+GFL E +D+Y+S E + ++GD V+ + + E + Sbjct: 61 NKTYFFGKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKDSSGSKPEGK 120 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +V ++ ++VG + GFVV DD++ + DI IP ++ GA+ G V+V++ + P Sbjct: 121 VVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKRMNGAKNGQKVLVKIDKWP 180 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 + K G+++E+LG + + ++ +IP + + V+++ L+ V E R Sbjct: 181 SPGKKPEGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSLETSVQAEEIKSR 240 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +DLRD TIDG D++DFDDAV E G + L V IADV++YV+ +P+D EA RG Sbjct: 241 LDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKEDSPIDEEAFLRG 300 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 SVY ++VIPMLP LSNG+CSLN VDRL + C M V KG++ K E+V++S R Sbjct: 301 NSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINKKICESVINSKKR 360 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 L Y V L+ + L + L+ ++ L K+L + R E G I FE EA Sbjct: 361 LVYDYVSDYLEDGVS-DDSLIGLEETLKNMYELSKILQEKRREMGSIDFEVPEALIKVTE 419 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + I + +R A+KLIE+ M+LAN + A + K + P L+RIH+KP E I S Sbjct: 420 DGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHEKPREEKIQELNSY 479 Query: 501 LAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 L LG G++ + RD +LL+ V + + + TM LR+M +A Y P+N HFGL Sbjct: 480 LRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKARYSPKNDIHFGLCF 539 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 Q Y HFTSPIRRY DLT+HR IK L + +++ + +H S E Sbjct: 540 QYYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKLN-------DDLQGISEHISATE 592 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R A EA R V ++M D++G + G+IS +T FG FV L++L I+GLV ++ Sbjct: 593 RVAQEAERQVESIKMAEYMSDRIGKKYNGIISGITNFGIFVELENL-IEGLVSYKTMKG- 650 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 +Y FD V R + + ++ +GD V ++V VN+ KIDF L S + Sbjct: 651 FYEFDPVNYRAVDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFELESDDNEKEE 703 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 214/713 (30%), Positives = 358/713 (50%), Gaps = 26/713 (3%) Query: 22 EFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I + L K K + +++ +L++ + E + L+ R G + + L + Sbjct: 15 QLISDVLEKSNKEALNYKQVSAKLNLTDADSRETISEILKEQARKGVFSEPEKGKFRLKD 74 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + G V DG F+ + + D+++S+ ++ +HGD+V + E Sbjct: 75 LKTFITGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEG 134 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +V ++ + +G FV DD ++ DI +P + + GA+ G V V +T+ Sbjct: 135 EVVEIIERSKTDFIGVIRISERYAFVNVDDRKMLHDIFVPLNDLNGAKNGQKVQVSITEW 194 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P +GKI+ +LG+ ++ L + P +P VE + + E+V G Sbjct: 195 PEGVKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAIPEQVSAAEIKG 254 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R+ TID DA+DFDDA+ + G + + V IADVS+YV+P++ LD+EA R Sbjct: 255 RKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYAR 314 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY +VIPMLPE LSNG+CSL P D+LC + K L F V+ S Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVNEWFGRTVIHSDR 374 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R +Y + +++ + +L+ L +L + + G ISFES E KF + Sbjct: 375 RFSYEEAQEVIENKA------GDYAAEILKLNELAYILRDKKFKNGAISFESTEVKFKLD 428 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAI 494 + + +R DAHKLIE+ M+LAN A F+ K + ++R HD P+ E + Sbjct: 429 ETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYRSHDSPNLENL 488 Query: 495 TSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 +F A G ++ +K + L+E V + + +L + +RSM +AIY + Sbjct: 489 GNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAIYTTKKT 548 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H+GLA Y HFTSPIRRYPD+ +HR + L E+ + EE Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKS------------ANEEEYEIAA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S E+RA +A R + + +++ + VGN+F G+IS VT +G +V L + +G++ Sbjct: 597 SHSSAMEKRAADAERASIKYKQAEYLEENVGNIFAGIISGVTEWGMYVELTENKCEGMIR 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + + +D+Y D+ ++G+ + Y+LGD V+V+V+ V++ +R+IDF+LI Sbjct: 657 LRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQIDFTLIQ 709 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 259/752 (34%), Positives = 408/752 (54%), Gaps = 54/752 (7%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY--- 76 ++FILE + +P E++ L + EE+ E L L + +G++ R+ Y Sbjct: 5 KKFILELMGDPIYQPMRLREISSLLRLSKEEKRE-LYDVLDELCEEGKVSVDRKGRYEKV 63 Query: 77 ------------------------------------ALPERLDLV--KGTVIGHRDGYGF 98 E+ + + +GT IGH G+GF Sbjct: 64 KGKWKKKKDDRYYDDRREEYGSEYGRKKKDKNKKDKNKKEQPEGIQAEGTFIGHPKGFGF 123 Query: 99 LRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RREARIVRVLVPKTSQIVGRYF 157 + +EG+ +D+++ T +H D+V ++G R+E +V+VL +IVG Y Sbjct: 124 VEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDKKEGKRQEGVVVKVLERGMPEIVGTYQ 183 Query: 158 TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDN 217 GFV+ D+ + S DI IP + G + G V+V +T + GKI E LG+ Sbjct: 184 LNRDFGFVISDNPKFSKDIFIPRKEAAGIKNGDKVIVVITDYGSGNKNPEGKIKENLGNI 243 Query: 218 MGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 G + +++ IP +P+ V +Q + + V + + GR+DLR L VTIDGEDA+ Sbjct: 244 RTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDADRDGRLDLRHLQTVTIDGEDAK 303 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA+ K G + L V IADVS YV+ ++ LDREA RGTSVY +V+PMLPE L Sbjct: 304 DLDDAISLTK-EGDIYHLGVHIADVSNYVQYNSALDREALKRGTSVYLADRVVPMLPERL 362 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDL 396 SNG+CSLN DRL + C M ++ KG++ ++ E V++ + R+ YT V +IL+ D++ Sbjct: 363 SNGICSLNQGEDRLALSCLMDINEKGKVVSHQIAETVINVNERMCYTDVKNILEDTDEEA 422 Query: 397 REQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAH 456 +++Y L+ + L +L +R RG I F+ E+K I NA + ++ + N A Sbjct: 423 KKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDFPESKIILNAAGKAIDVKPYEANVAT 482 Query: 457 KLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL-PGGNKPE 515 K+IE+ M++AN + A+ + P ++R HD P E + S ++L G+++ + Sbjct: 483 KIIEDFMLMANETVAQEYCTEEIPFVYRTHDNPDPEKVESLLTLLHNQGVKIQKAKEEIT 542 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 P++ +++ES+ P+ M+ ++LRSMKQA Y E GHFGLA + Y HFTSPIRRYPD Sbjct: 543 PKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYTTECSGHFGLAAKYYCHFTSPIRRYPD 602 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 L +HR IK L +G T + E + ++ + S+ ERRADEA R+ K Sbjct: 603 LQIHRIIKDNLRGRLMREGRT------EHYAEILDEVARQSSVCERRADEAERESDKLKK 656 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 ++M +G F+G+IS VTG+G +V L + ++GLVHV++L +DYY FDQ L GE Sbjct: 657 AEYMSYHLGEEFEGIISGVTGWGLYVELPNT-VEGLVHVNTLRDDYYIFDQETYELRGEM 715 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + + Y+LGD+V VRV + + +DF L++ Sbjct: 716 TKKVYKLGDKVCVRVADADKMLKTVDFELVAD 747 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 324/793 (40%), Positives = 453/793 (57%), Gaps = 21/793 (2%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP + EAE+Y NPIPSR IL L + + P S EL I ++ ++ L RL AM Sbjct: 19 DPEAKAEAERYDNPIPSRTLILTTLEQLDLPQSHAELVDHFDIHDQKSIDALSHRLIAMV 78 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 RDGQL + TV + G+G ++G+ +DL L +++ +GD+ Sbjct: 79 RDGQLSKDGF-KFQPIGEQPTFDATVYINNKGFGSAHIDGQ-NDLLLPERELRLVFNGDR 136 Query: 124 VLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 V + DRKG+ I V + Q++G+ G F+ P I + + I Sbjct: 137 VKVRQTSVDRKGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELI 196 Query: 184 MGA--RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 A ++G + V + PTR + G I++ + D T + + + +PY +P+ V Sbjct: 197 EHAQAKVGENLRVAIDDYPTREEFSTGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEEV 256 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 + KE ++ GR+DLRDLPLVTIDGEDARDFDDAVY EK+ GGG+R+ VAIAD Sbjct: 257 VKDAESFKEP-SKKDIEGRIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIAD 315 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVR PLD EA+ RGTSVYFP V+PMLPE LSNGLCSLNP VDRLCMVC++ +S Sbjct: 316 VSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSR 375 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 GR+ Y+FY +VM S ARLTYT+V + G D + K L L LY+ L R Sbjct: 376 AGRVMSYEFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGLR 435 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +R + FE+ E F+ I+ I RN+AHKLIEECM+LAN++AA F + P Sbjct: 436 AKRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIPM 495 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+H+ P I + + LG LP ++P DY ++E+ DR DA + +LLR Sbjct: 496 LYRVHEAPEFSRIQKVKDFVKLLG--LPFPDQPTQADYQRVIEATKDRIDAPSIHAVLLR 553 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM QA Y +N GH+GLA ++Y HFTSPIRRYPDL LHRAIK L ++ Sbjct: 554 SMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKP----------- 602 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 Y S + G+ S ERRADEA+R V WLKC +M +G F G+IS+VT FG FV Sbjct: 603 YPLSGAALDDAGEQFSRTERRADEASRSVTTWLKCHYMKQHLGEEFIGIISAVTEFGLFV 662 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L DL++DG++HVS L +D++ +DQ Q L+G++ GQ + LGD V+++V AVN+DERKID Sbjct: 663 TLKDLYVDGMIHVSQLGDDFFLYDQASQSLVGQNRGQIFGLGDEVKIKVAAVNLDERKID 722 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 F L+ + G+ R+KA + + + V + + R ++K+K K + Sbjct: 723 FELMQQI---THAGRVIRQKAPRSSKTQATEQVFNVPSETTSTQERDTRKKEKSKSKPSS 779 Query: 782 KDARKAKKPSAKT 794 + AKK S + Sbjct: 780 YAKKSAKKSSPAS 792 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 252/707 (35%), Positives = 387/707 (54%), Gaps = 14/707 (1%) Query: 28 LTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKG 87 L+ KP EL + + EQ + +R ++ +E++G++ R Y DL G Sbjct: 14 LSDDYKPMVLKELYKKFRAKTREQRKKVREVVKKLEKEGRIFRDSRGRYRKLGE-DLKVG 72 Query: 88 TVIGHRDGY-GFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV 146 T+ R GY F+ + ++ + + E K +H D+V+ + G R G R+VRVL Sbjct: 73 TIEFTRSGYVAFVITDDFEE-IAVPVEDTKYAMHKDRVVVEITGTWR-GLPRGRVVRVLE 130 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++VG + + GFVVPDD ++++D + P+ I GA+ V+ E+ + P+ Sbjct: 131 RGLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPENIDGAKPNQKVIAEILKYPSPGKNP 190 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPY--IWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 K+V+VLGD + + + H++P +P+ V ++ + V ++ GR DLR Sbjct: 191 EAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKDLR 250 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 D +VTIDGEDA+DFDDA+ EK G + L V IADVS+YV+ + LD+EA RGTSVY Sbjct: 251 DKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVY 310 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 VIPMLP LSNG+CSL DRL M EM + GR+ Y Y +V+ S R+ Y Sbjct: 311 LIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYE 370 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI-SFESEEAKFIFNAERR 443 +V L+ ++E Y P + L ++L +AR +RG I ES+E K I + + Sbjct: 371 RVNEFLEDPSSMKE-YEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILDENGQ 429 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 + I +R A KLIEE MI AN + A + A P ++R+H++P E I ++ L Sbjct: 430 VVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLKNYLEA 489 Query: 504 LGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSY 563 +G+ +K P +LLE V D P ++ +L+RSMK+A+Y N GHFGLA +Y Sbjct: 490 MGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGLASYAY 549 Query: 564 AHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRA 623 HFTSPIRRYPDL +HR +K L + E + + ++ +HCS ER A Sbjct: 550 THFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFS-----KVLPKIAKHCSRRERVA 604 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 DEA D+ K +++ +G VF V++++T FG FV + + I GLVH+S+LD DYY Sbjct: 605 DEAEWDLVAMKKVEYIARHIGEVFNVVVTNITKFGLFVEIPEKSISGLVHISTLD-DYYY 663 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +D+ L+G+ G+ +RLGD ++ +V + +IDF L+ + Sbjct: 664 YDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLVEEDEE 710 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 218/722 (30%), Positives = 358/722 (49%), Gaps = 27/722 (3%) Query: 24 ILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I++ L K + ++A L + + ++L + ++ R + + Sbjct: 19 IIDILRNNSGKTYNYKQIASILGVNDASSRNQIIKKLAQLAAKQEIEEVERGKFKIESNK 78 Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 + G + GYG++ VE DD++++++ + T GD V R+ R E I Sbjct: 79 NYYTGVLDLTTKGYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFNRRRRKRSEGEIT 138 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 +++ K ++ VG + GFVV DD + D IP +++ GA G VVVE + P + Sbjct: 139 KIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNKLNGAENGDKVVVEFEEWPKK 198 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 +GKI VLG + L + +P+ +P+ VE+ + + +E + R D Sbjct: 199 ADSPLGKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKIDTSINKEEISKRRD 258 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 +RD+ TID +DA+DFDDA+ EK + G + + + IADVS+Y++P T LD EA R TS Sbjct: 259 MRDVLTFTIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQPGTILDEEAYERATS 318 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +V+PMLPE+LSN CSL P+ ++ + + F V S R Sbjct: 319 VYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVKNQWFGRTVTYSDERFA 378 Query: 383 YTKVWHILQGDQDLREQYAP-----------LVKHLEELHNLYKVLDKAREERGGISFES 431 Y + HIL+ L++ + L+ L K + R + G ISF+ Sbjct: 379 YEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAKKMRTRRMKDGAISFDK 438 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA--KEPALFRIHDKP 489 E KF N + + DA+KLIEE M+LAN A ++ K K+ ++R HD+P Sbjct: 439 VEVKFNLNEDNNPVGVFFKTAKDANKLIEEFMLLANRKVAEYIGKQSPKKTFVYRNHDEP 498 Query: 490 STEAITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 + + S ++++ G +L + +LLE V R + M+ T+ +R+M +A Y Sbjct: 499 DDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKEQNMVDTLAIRTMSKAYY 558 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 E+ GH+GLA Y HFTSPIRRYPD+ +HR +++ L + S EE Sbjct: 559 GTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGAKS------------ASEEE 606 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 H S E A A RD +++ FM D F GVIS VT +G FV + + Sbjct: 607 YETKCHHSSEMENLATNAERDSIKYMQVKFMQDHENEEFLGVISGVTEWGIFVEIVENKC 666 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +G++ + +++D+Y F+ ++G+ +GQTY LGD V V+V+ ++ +R +DF+L+ + Sbjct: 667 EGMIRLRDMNDDHYEFNADEFSVVGKRTGQTYTLGDEVYVKVKNADLIKRHLDFTLLGNR 726 Query: 729 RA 730 Sbjct: 727 EE 728 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 237/740 (32%), Positives = 371/740 (50%), Gaps = 36/740 (4%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD---LV 85 R+ P S EL +LH+ ++ + L+ L + R+G L + Y+ LV Sbjct: 29 NSRKNPFSYKELIKKLHLVRDKDKKALKDVLEDLVREGILAKDKSGLYSNAGSSGGESLV 88 Query: 86 KGTVIGHRDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKG-----RRE 138 G V + ++ EG K +D+++SS +M + GD V G E Sbjct: 89 TGRVDFVNARFAYVIPEGEKADNDIWISSNKMSGALDGDIVRVAVYKKSGGGNKGTKSAE 148 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 IV ++ K + VGR A FVVPD ++ DI IP + I GA+ G V+V++T Sbjct: 149 GEIVEIVERKRTSFVGRIEVSARHAFVVPDGRKMHVDIFIPKEHINGAKTGEKVLVDITA 208 Query: 199 RPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 PTR K GK+ EVLG + L +PY +P V + + E E Sbjct: 209 WPTRDEKSPTGKVTEVLGMAGENETEMHAILAEFGLPYEFPNQVIKAAQDITAETSEAEI 268 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R D+R TID EDA+DFDDA+ + G W + V IADVS+YV+P LD+EA Sbjct: 269 KKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGDTLDKEAY 328 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 R TSVY + +PMLPE LSN LCSL P D+L + + ++ F ++ S Sbjct: 329 RRATSVYLVDRCVPMLPERLSNELCSLRPNEDKLTFSAIFEIDADAKVLDEWFGRTIIHS 388 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R +Y + +++ Q LVK L L+ L K + R + G ISFE+ E KF Sbjct: 389 TRRFSYEQAQEVIE------TQQGDLVKELTILNTLAKKMRAQRFKEGAISFETVEVKFQ 442 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE------PALFRIHDKPST 491 +A+ + + R DAHKLIEE M+LAN A FV ++ ++R HD P+ Sbjct: 443 LDAKGKPLAVVPKVRKDAHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYRTHDAPNP 502 Query: 492 EAITSFRSVLAELGLELPGGNKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 E + S + G ++ ++ ++ +L + V +P+ +LQ++ +R+M +AIY Sbjct: 503 EKLASLATFAKRFGHKVELDDENAIAKNLNKLSDEVEGKPEQNVLQSLAIRTMSKAIYSI 562 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 E HFGLA + Y+HFTSPIRRYPD+ HR +++ L + E + Sbjct: 563 EPDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQHYLDGGKS------------ADKEYYI 610 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + +H S E+ A EA R + + +FM +G F+G++S VT FG FV + + +G Sbjct: 611 EACEHSSAQEKLAAEAERSSIKFKQVEFMQSSIGKEFEGIVSGVTEFGMFVEIVETKCEG 670 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +V ++ +D+D+Y D R++G+ + + LGD V+V V++ N++ R ID L+ + Sbjct: 671 MVRLADMDDDFYEVDTDNYRIVGKRNKRMITLGDSVQVIVKSTNLERRTIDLELVKNSDG 730 Query: 731 PRNVGKTAREKAKKGDAGKK 750 R+V + A + + K+ Sbjct: 731 NRDVNRDALDFSDARKPSKR 750 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 244/717 (34%), Positives = 393/717 (54%), Gaps = 12/717 (1%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E ILE L+ S D +A +L+ ++ L + + +E +G++V + Y LP Sbjct: 2 KEKILELLSDENYLERSIDLIAAKLNCNKSDKFVNLVKLMNELEDEGKVVRNKYNHYYLP 61 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + ++ GT+ ++ G+GF+ VE ++ D+++S + +K + D VL + + R E Sbjct: 62 NQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNKDTVLVELKKHSDEERPEG 121 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 R++RV+ +++VG FV DD I + + GA G V VE+ Sbjct: 122 RVIRVIKRGQTRLVGEIKKGKRDCFVDVDDPMFDKPIFVDRAHLHGAMPGHKVQVEIKTY 181 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + G +V++LG G+ + + H+ P +PQAV Q+ + + + Sbjct: 182 ---KPILKGDVVKILGHRNDPGIDILSIVYEHDAPVEFPQAVYDQIENIPDSLEGIDIGQ 238 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+DLRD +VTIDG+DA+D DD + +K G + L V IADVSYYV +PLD+EA R Sbjct: 239 RIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVHIADVSYYVTEESPLDKEAFAR 298 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTS+Y +VIPMLP LSNG+CSLNP VDR + C M + G + + AV++S Sbjct: 299 GTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFMEIDENGEVVEHDIVPAVINSTE 358 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TYT V IL GDQ L+ QY+ + + L +L + RG I F+ +EAK + + Sbjct: 359 RMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMILQAKKARRGAIDFDVKEAKVLVD 418 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 ++ + +R + ++IEE M+LAN + A + + P ++R+H+ P + + F Sbjct: 419 SKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWLELPFIYRVHENPKPKKLLQFSG 478 Query: 500 VLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + LG + G P + + ++E D P+ ++ T+LLR M++A YD + GHFGL Sbjct: 479 IAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIATLLLRCMQKARYDEQCLGHFGL 538 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRYPDL +HR I+ + + N + + E M ++ S Sbjct: 539 ADEYYTHFTSPIRRYPDLIVHRLIRKYMFE------NRLDRRTIMHYQELMPEIALQTSA 592 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A R+V D +FM Q+G F+G+ISSVT FGFFV LD+ IDGLVHV+ L Sbjct: 593 REREAIMIEREVDDMKIAEFMEKQIGEEFEGIISSVTNFGFFVELDNT-IDGLVHVTDLT 651 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVG 735 +D+Y FD+ R +G+ +G+ +++ DRV+VRV + + ++ +DF ++ + + Sbjct: 652 DDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKDKSVDFEIVGMKSNKKTTK 708 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 259/732 (35%), Positives = 404/732 (55%), Gaps = 20/732 (2%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E IL L ++ S ++L ELH G L + L MER + + L Sbjct: 7 QEQILTFLQAHPDRTYSVEQLTDELHFTGATAFTFLVKELANMERKKLVSTDDHDHFKLV 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR--- 136 + V+G+ G+ G+GF+R + D+Y++ + + I GD V + + R G Sbjct: 67 QETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPGSDRG 126 Query: 137 REARIVRVLVPKTSQIVGRYFTEAG----VGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 E +IV ++ +QIVG Y +G V D +LS L+ DQ + G V+ Sbjct: 127 PEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHPTEGEVI 186 Query: 193 VVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 + E+ P + +G +V+G GM V + H++P ++P+ V + + + Sbjct: 187 IAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDEANRIPD 246 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 V +E K GRVD+ D PLVTIDG +++D DDAV + G + L V IADVS+YV ++ Sbjct: 247 YVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSHYVTENS 306 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LDREA RGTSVY +VIPMLP LSNG+CSLNP V+RL M CEM + G + +K Sbjct: 307 ELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGEIVNHKI 366 Query: 371 YEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 +++V+ SHAR+TY V IL+ D RE+YA LV + + +L+++L K R RG I F Sbjct: 367 FQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRRHRGAIDF 426 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + EAK I + I+ R A ++IE M+ AN + A+ + K P ++R+H+ P Sbjct: 427 DDNEAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFIYRVHETP 486 Query: 490 STEAITSFRSVLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 ++ + SF + G+ + G +K +P+ ++L+ VA +P+ M+ M+LRSMKQA Y Sbjct: 487 DSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLRSMKQARY 546 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 ++ GHFGLA Y HFTSPIRRYPD+ +HR I++ G + + Sbjct: 547 ADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEARARY-------RDN 599 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 + + + S ERR + RDV K ++M D VG F+ V+ SV FG FV L++ + Sbjct: 600 LPNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGETFEAVVDSVMKFGLFVELENT-V 658 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +GLVH+S++D+DYY + + L+G + +T+R+G V+V++ V+ D+R++DF L++ E Sbjct: 659 EGLVHISTMDDDYYEYVEKQLALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFKLLNPE 718 Query: 729 RAPRNVGKTARE 740 AP+ RE Sbjct: 719 EAPKTDLLPKRE 730 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 242/711 (34%), Positives = 397/711 (55%), Gaps = 16/711 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E +L+ +T R +P EL+ L + +E+ + L+ + ++ DG+++ Y Sbjct: 10 KELLLQVITDRSYRPMKFRELSSLLQVPKDER-DDLKIVMDSLISDGKIMLDGNGRYKE- 67 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 ++ G G G+GF+++EG + +D+++ + K ++ D+V RR Sbjct: 68 TNGNIKTGIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRRR 127 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E ++ +L +++VG + GFV+ D+++ + D+ IP + GA G V+V+LT Sbjct: 128 EGAVISILERNVTELVGTFQKSKNFGFVIADNTKFNSDVFIPKEHTKGAVNGHKVLVQLT 187 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + GKI++++G G+ V + + +P +P V +QV + EEV Sbjct: 188 DYGSETKNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVERIGEEVSSADI 247 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GRVDLR+L VTIDGEDA+D DDA+ K +G ++L V IADVS YV +PLD+EA Sbjct: 248 GGRVDLRNLQTVTIDGEDAKDLDDAITLSK-KGDIYQLGVHIADVSNYVTEDSPLDKEAL 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP LSNG+CSLN DRL + C M + KG + G++ E V++ Sbjct: 307 KRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGHRIAETVINV 366 Query: 378 HARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V I++ D+ E+Y LV E + L +L + R +RG I F+ E+K Sbjct: 367 DRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDFPESKI 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 I +++ R I+ +RN A K+IE+ M++AN + A + P ++R H+ P E I Sbjct: 427 ILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDLEKIQK 486 Query: 497 FRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + G + G ++ P++ +LL + +P+ ++ + LRSMKQA Y GH Sbjct: 487 LSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTTTCDGH 546 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGL+ + Y+HFTSPIRRYPDL +HR IK L + ++ + ++ + Sbjct: 547 FGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGG-------LKEKRINHYESILNEVARQ 599 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S+AERRADE+ R+V K ++M +G F+GVIS VT +G +V L + ++G++ ++ Sbjct: 600 SSLAERRADESEREVEKLKKVEYMSQFIGQTFEGVISGVTSWGMYVELPNT-VEGMIRLA 658 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + +DYY +D+ L GE + + Y+LG+ V +RVE + R I+FS++ Sbjct: 659 DMHDDYYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTINFSIVG 709 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 252/688 (36%), Positives = 388/688 (56%), Gaps = 15/688 (2%) Query: 45 HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL-DLVKGTVIGHRDGYGFLRVEG 103 I G + LE R + + R+G L +R Y ++ + +G G+R YGF+ + Sbjct: 4 RIRGGKDLEMFIRSAKMLAREGVLTSSRPDVYRYEDQQHEEYEGIYKGYRKSYGFVIMLD 63 Query: 104 RKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLVPKTSQIVGRYFTEAGV 162 +D+Y++ + T +H D+V + + +D K +RE IV V+ IVG Y + Sbjct: 64 D-EDIYVAEQNKGTAMHNDKVRVRIVPSDYTKHKREGIIVDVIERANETIVGTYDRQQHF 122 Query: 163 GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGM 222 GFVVPDD R+ D+ + + AR G V+V++T+ P K G I E+LG G+ Sbjct: 123 GFVVPDDERIGTDVFVDLKNTLDARSGAKVLVKITKWPEGNKKPEGIITEILGYKGDVGL 182 Query: 223 AVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDA 282 ++ + H+IP+ +P+ V + + V E+ R DLRDL +VTIDGEDA+D DDA Sbjct: 183 DINCIMANHKIPFAFPKEVIEASEKIDTIVHED--PKRWDLRDLQMVTIDGEDAKDLDDA 240 Query: 283 VYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLC 342 V K G + L V IADVS+YV P+D EA RGTSVY +V+PMLPEVLSNG+C Sbjct: 241 VSGRKLPNGNYELGVHIADVSHYVTSGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGIC 300 Query: 343 SLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP 402 SLN DR M C M + G + Y+ +++ R +Y +V+ L+ + + + Sbjct: 301 SLNAHEDRYAMTCMMEIDDSGTVVNYRIRPSIIHVGRRCSYKEVYKALE-ENIIPDDLVD 359 Query: 403 LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEEC 462 + L +L + K+L++ R RG + F+ E K + + + RI + R A +LIEEC Sbjct: 360 FIPMLRDLAEISKILNRMRRRRGALDFDFPEYKVLLDLDGTPLRIVKRDRTMAERLIEEC 419 Query: 463 MILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAE 521 M++AN + A + + +++RIH+ PS E + F+ VL LG L + PRD+ + Sbjct: 420 MLIANETVATHLRDTERTSVYRIHENPSEEKLDLFQKVLNYLGQNLVISADGVTPRDFQK 479 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 +L+ V + ++ Q M LRSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR Sbjct: 480 ILDVVKGQDIEQVAQIMTLRSMQQAKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRL 539 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD 641 +K + + G+ + ++E H S+ E+ A EA R+ D K +M+ Sbjct: 540 LKADMHWKGGYSKRDVDEAFLAGAVE-------HSSIQEQVATEAERETTDLKKTQYMVP 592 Query: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYR 701 VG VF+G I+S+T FG FV L++ IDGLVH+S +++DYY FD+ L+G+ +G+TY Sbjct: 593 FVGEVFEGTIASITSFGMFVELEN-GIDGLVHISMMNDDYYFFDEEHFVLVGKRTGKTYH 651 Query: 702 LGDRVEVRVEAVNMDERKIDFSLISSER 729 LG++V V + ++++++IDF L + Sbjct: 652 LGEKVTVTLVKADVEKKQIDFVLGEVDN 679 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 249/737 (33%), Positives = 401/737 (54%), Gaps = 16/737 (2%) Query: 18 IPSREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 I ++ I + +P S +L L + E+ + + + + +VF+++ Sbjct: 4 IDIKQQIETMIADEHYRPLSLAQLQETLGLSTTEEFVAMNKAVNELAEQYVIVFSQKGNL 63 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 +G + +R G+GFL +E ++ ++++ + ++GD + + L + G Sbjct: 64 MPARMGGYYQGALSVNRKGFGFLDLED-ENSIHITEANLHGAMNGDVAIVKKLPSFY-GS 121 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGF-VVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 E ++RVL KT+ +VG +FT G G + DD R+ +++ Q G V+++ Sbjct: 122 DEGEVIRVLQHKTNTLVGTFFTSVGKGLQLRLDDERIKSRLIVKNWQAFKMVSGTKVLLK 181 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + + +IV++LG G+ + L ++I +P+ V +Q V + Sbjct: 182 VLRY---GDPMELEIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPK 238 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 K GR D ++TIDGED++D DDAV EK GG +RL V IADVS+YV ++PLD+E Sbjct: 239 EKEGRRDCTGKMIITIDGEDSKDLDDAVCVEKIAGG-YRLGVHIADVSHYVPENSPLDQE 297 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTS Y +V+PMLP +LSNG+CSLNP+V RL + CEM +S G + Y+ + + + Sbjct: 298 ALKRGTSTYVVDRVVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEILNYEIFPSFI 357 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 + R+TYT V IL+G+++ +Y L + + + + + + K R E G I FE+ EAK Sbjct: 358 KTTERMTYTAVNAILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAK 417 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I N + +IE I+ +R +A +IE+ M+ AN AR ++ + PAL+R+H+ P + + Sbjct: 418 IILNEQNKIEEIQVRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLR 477 Query: 496 SFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 F ++ +G G + P +LL+S D P ++ TM+LRSM++A YDP G Sbjct: 478 DFAKIVLLMGKRFKGSVEQIRPLQLQQLLDSFKDDPAYPVISTMMLRSMQKAKYDPRCLG 537 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLAL+ Y HFTSPIRRYPDL +HR + G + +M + G+ Sbjct: 538 HFGLALEEYTHFTSPIRRYPDLIVHRMLHKY------GFGTALDPEMMKQDELKMEEYGK 591 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S ER A EA R+V D K ++M DQ+G + +GVIS VT FGFFV L++ ++GLVHV Sbjct: 592 LTSERERAAIEAEREVEDMKKAEYMEDQIGKIAEGVISGVTKFGFFVELENT-VEGLVHV 650 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 L +DYY +D L GE + + YRLG RV+++V + ++IDF L+ + R Sbjct: 651 QKLTDDYYHYDPDTLSLKGERTKKIYRLGQRVKIKVTGASKLHQEIDFDLVRPRKEKREP 710 Query: 735 GKTAREKAKKGDAGKKG 751 A++KA + Sbjct: 711 IPAAKKKAGPRKEPSRP 727 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 322/722 (44%), Positives = 459/722 (63%), Gaps = 24/722 (3%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP+ +RE++KY PIPSR +IL K K EL L I Q + L RLRAM Sbjct: 3 DPYYKRESKKYNKPIPSRGYILSFFEK--KSHKLHELCNLLSI-DHHQKKPLTHRLRAMV 59 Query: 64 RDGQLVFTRRQCY-ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 RD QL +R Y E+ ++ GTVI + G+GF+ ++ DL LSS+QM+ HGD Sbjct: 60 RDQQLNCDQRGVYHKFSEKNWVMTGTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFHGD 119 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +V + L R + +I++V+ +VGR E +VV DD R+ +I I Sbjct: 120 RVKVRLLNQ----RGDTQIIKVIK-SIETVVGRLHLEKDGAYVVVDDKRIKHNISISKIN 174 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 +V+V++T+ PT ++ AVG+IV++LG M G+ D AL + IP + Sbjct: 175 REHL-DEQIVIVKITKSPTLKSLAVGEIVQILGSYMDEGVETDSALYRNGIPVDFSPEAL 233 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 Q L V + K GR+D+ + LVTID ED+RDFDDAVY + G W+L V+IADV Sbjct: 234 IQTDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQTTSKG-WKLVVSIADV 292 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+ LD++A +RG SVYFP V+PMLPEVLSNGLCS+NP V+RLCM CEM + + Sbjct: 293 SHYVKEGLYLDKDATDRGNSVYFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNIDTH 352 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G L YKFY AVM SHARLTYTKV IL+ D DL +QYA ++ +L L++LYK L A+ Sbjct: 353 GNLLDYKFYPAVMLSHARLTYTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKALKYAK 412 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +RG + F+ E++ +FN +I+ I RNDAHKLIEECM++AN ++A+F+ E Sbjct: 413 IKRGVMDFDRIESQILFNDNGKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHHNEDF 472 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+RIH KP+ E + R L +GL L GG +P+ +D+A++L S R D +++T++LR Sbjct: 473 LYRIHPKPTVEKVEVTRQFLTAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKTVVLR 532 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 +MKQA+Y P N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +L K+ Sbjct: 533 TMKQAVYTPVNEGHFGLAFENYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPS------- 585 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ML++G H SM ERRAD+A+RDV WLKC++M D++GN F GVIS V FG F+ Sbjct: 586 -----KKMLEIGAHLSMTERRADDASRDVEQWLKCEYMRDKIGNTFNGVISGVASFGIFI 640 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L D+F++G++ + + +DYY FD + +L GE +G+ Y+LG+ ++++V +VN+D+R++ Sbjct: 641 ELTDVFVEGMIAIRDMKDDYYIFDDIHHQLKGERTGKIYQLGNTIKIQVASVNLDDRQMA 700 Query: 722 FS 723 F Sbjct: 701 FV 702 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 255/750 (34%), Positives = 396/750 (52%), Gaps = 15/750 (2%) Query: 15 ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 +P+ E IL L + + R + VE + +++ + R L + + Q++ + Sbjct: 8 EHPLTPEERILAFLREEAQKPVRSDRLVEAVLRKKKERSDVSRALDRLVAEKQVILLKGG 67 Query: 75 CYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK 134 LP++L +G + H DGYGF+ EG ++DLY+ K +H D+VL+ LG D + Sbjct: 68 YAGLPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHLGTDHR 127 Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 GR E ++V ++ S +VG G F+ P D ++ + L+ + + G + V+ Sbjct: 128 GRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVDNGAEKLQEGELAVL 187 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 ++ + P GKI LGD + D+ + TH + +P VE + + +EV Sbjct: 188 DILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKRMAKEVAV 247 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E RVDLR L ++TIDG+ ARDFDDA+ + G +++ + IADV YV P + LD+ Sbjct: 248 EPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDK 307 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RGTSVYFP +V+PM PEVLSNG+ SLNP DRL + +S G++ + +V Sbjct: 308 EAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSV 367 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S R TY++V IL G+ + V L L L K L + R + G + F+ E Sbjct: 368 IRSRLRATYSRVHPILAGESTDSPESKFSV-QLRSLWKLAKNLREERFQNGSLDFDLPEP 426 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 + + + I ++ R +H L+EE M+LAN A + + A++R+H+ PS E Sbjct: 427 EIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEKT 486 Query: 495 TSFRSVLAELGLELPGGNKPEPR--DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 S L LG+ +P + + + D + +LES P +M+ +LRS+KQA YD Sbjct: 487 ESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDVYP 546 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA+ Y HFTSPIRRYPDL +HR + S + Q+ Sbjct: 547 LGHFGLAMDDYTHFTSPIRRYPDLIVHRLL-----------DLPEGRPSGEGSFYPLEQV 595 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 S ER + EA R D K FM +G F G +S VTGFGFFV L D+ ++GLV Sbjct: 596 AVQASERERASVEAERMAVDLKKIRFMGQHIGKKFSGSVSGVTGFGFFVELSDVLVEGLV 655 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 S+L++DYY +D+ L GE++ +TYR+GDR+EV V V+ + +I+F+L E P Sbjct: 656 PFSALNDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFAL-DQEGRPE 714 Query: 733 NVGKTAREKAKKGDAGKKGGKRRQVGKKVN 762 ++ K +++ K + ++ GK R+ G Sbjct: 715 SLQKVRKKRKGKKNRSQRAGKSRKKGSAKG 744 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 250/719 (34%), Positives = 404/719 (56%), Gaps = 24/719 (3%) Query: 11 AEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVF 70 +K N + S ++I P + DEL+ L+IE +++ + + + +++D +++ Sbjct: 4 KQKVLNIVNSNDYI---------PLTFDELSSRLNIEKKDK-KIFHKIINELQKDKKILL 53 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPL 129 + GT+ G + + + DD++++ + + IH D+VL Sbjct: 54 DKNSNIIPITEQKAYPGTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVTIT 113 Query: 130 GADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 + R E +++++L +T ++VG + G GFV+ DD + FD+ + GA+ Sbjct: 114 VEKKPNRSPEGKVLQILSRETKKLVGTFDEAKGYGFVILDDKKYGFDVFVQSGNKNGAKN 173 Query: 189 GFVVVVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 VVV+L + P++ K G IVEVLG G+ + +T ++PY +P+ V+QQ Sbjct: 174 NDKVVVKLIKTPSKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKE 233 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 +++ V E K R+D RDL V+IDG DA+DFDDA+ K +G + L+V IADVS+YV+ Sbjct: 234 IEQHVDESEKKSRMDFRDLLTVSIDGSDAKDFDDAISITK-KGENFVLYVHIADVSHYVK 292 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 +T LD+EA RGTSVY +VIPMLP LSNG+CSLNP DRLC+ +M +S G+ Sbjct: 293 KNTALDKEAFRRGTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLD 352 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 YKFYE+V++S RL Y V L+ D D + L +L + LY++L R++RG I Sbjct: 353 YKFYESVINSDYRLIYKNVSDFLE-DIDNPYEDEKLTDNLLLMKELYEILSARRKKRGSI 411 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 F+ E K I + ++ + + +R +KLIEE M++ N + A P L+R+H+ Sbjct: 412 DFDFPETKIILDENSKVIDVTKDERRIGNKLIEEFMLITNETVASHFGYLDRPFLYRVHE 471 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 +P E + +F+ +L+ G L G N +DY +L + +P+ +L ++LLRSM++A Sbjct: 472 EPDEEKVNTFKRILSNFGYHLKGKN-LYSKDYQRILNELDGKPEKPLLASLLLRSMQKAE 530 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y HFGLA Y HFTSPIRRYPDL +HR +K + + +T M+ Sbjct: 531 YSENPSIHFGLASMFYTHFTSPIRRYPDLFIHRIVKNFINHKP-------DTNNEKEFMK 583 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + + + CS ERRA+EA R+ D ++M + F+G+ISS+T FG FV+LD+ Sbjct: 584 YIKDIAKQCSATERRAEEAEREAIDMKSAEYMQQHIDEEFEGIISSLTKFGIFVQLDNT- 642 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 I+GLV S+ +DYY FD+ + GE + ++Y +G +V V+V + D+R+IDF ++ Sbjct: 643 IEGLVQFQSMIDDYYVFDEKNYTVYGERTKKSYHIGQKVRVKVINSDKDKRQIDFEFVN 701 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 243/706 (34%), Positives = 397/706 (56%), Gaps = 18/706 (2%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E +L+ + K +P S E++ ++ E+ + L+R L+ + G+++ R+ Y + Sbjct: 4 EEVLDFIKKSGRPLSFREISESFGLKASERKK-LKRMLKELLSQGKILRNRKGLYLTIKE 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 L+ G H++G+GF+ + K+ D+++ +HGD+V+A+ +++ +RE R Sbjct: 63 AKLITGFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMHGDRVVARV---EQRKKREGR 119 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 IVR+L T ++VG + ++ P ++ I+I I G +V+ E+ Sbjct: 120 IVRILERATRRVVGIVEKSGPIFYIQPRKKNINQQIVIASGDIK-VNPGSLVLAEIVTYQ 178 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-VPEEAKAG 259 V KI++V ++I +E+P + + V L + + ++ Sbjct: 179 AVNKPLVAKILKVFEKPKTPKEDIEILTYEYELPKKFSKEVSNFSEELSLKGISKKQFKN 238 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 RVDLR+LP VTIDGE+A+DFDDAV +K R G + LWV IADVS+Y++ ++ +D EAR+R Sbjct: 239 RVDLRELPTVTIDGENAKDFDDAVSIKKIRNG-FILWVHIADVSHYIKWNSTIDGEARHR 297 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY P +VIPMLP LS LCSL P++ RL EM S+ G FY +++ + Sbjct: 298 GTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMHFSNSGERKESLFYPSIIQTAE 357 Query: 380 RLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+TYT V IL D++ ++Y PLV + E++ L ++L R++RG + F+ E + + Sbjct: 358 RMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEILKNKRKKRGSLDFDLPEPEVLL 417 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + I + +RN AH +IEE MI AN + A F+ P+L+R+H++P T I Sbjct: 418 DIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYSNNIPSLYRVHEEPETNKIQYIT 477 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 ++ LG+ +P D+ E +E + P E++ ++LRS+KQA Y EN GHFGL Sbjct: 478 RIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVNYLILRSLKQARYSSENVGHFGL 534 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRYPDL +HR +K L K + + E E + + H S Sbjct: 535 ASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQKELK------EILPHIAIHSSR 588 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ERRADE RD ++ FM D+VG F+G ++ VT G VRL++ +I+G +H+S + Sbjct: 589 MERRADEVERDAIQIMRVWFMKDKVGEEFEGRVTMVTPEGLRVRLEEYYIEGFLHLSHMI 648 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +D+Y+FD+ L+G + + +G ++ VRV V+++ER+I F L Sbjct: 649 DDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEEREIIFDL 694 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 250/811 (30%), Positives = 424/811 (52%), Gaps = 34/811 (4%) Query: 21 REFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE I+++L K S +EL+V LH+ + + + L ++E + L FT + L Sbjct: 4 REVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLNFTAKGKVELA 63 Query: 80 ERLD---LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG---ADR 133 E+ + ++ G + G+GF+ ++ + D++++ Q + GD+V + A + Sbjct: 64 EKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNANALK 123 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAG--------VGFVVPDDSRLSFDILIPPDQIMG 185 E +V ++ Q+VG + +GFV + ++ + + + + ++ Sbjct: 124 GTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEGLI- 182 Query: 186 ARMGFVVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 +V VE+T P + G + E++G G+ V L + +I +P+ V Sbjct: 183 PENKAIVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVLD 242 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 Q + EEVPE GRVD R+ TIDG DA+D DDAV+ ++ G + L V IADVS Sbjct: 243 QAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVS 302 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV ++PLD+EA RGTSVY +V+PMLPE LSNG+CSLNP+++RL C M +S +G Sbjct: 303 HYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEG 362 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 R+ Y+ ++++ + R+TY V ++ GD+ E YA + ++ + L+ +L+ R+ Sbjct: 363 RVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKR 422 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I F++ EAK I N + I + R A ++IE M+ AN + A E P ++ Sbjct: 423 RGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPFIY 482 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 RIH++P + + F A G+++ G N + + ++ + +P +L TMLLRS Sbjct: 483 RIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRS 542 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M+QA Y N GHFGLA ++Y HFTSPIRRYPDL +HR I+ + T Sbjct: 543 MQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREI-------GEGKTPANIL 595 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 +++ ++ +H S ERRA +A R+V K +FM + VG ++G+I+SVT FG F+ Sbjct: 596 QKWEDKIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFIE 655 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L++ I+GLVH+S+L DY+ + + L+GE SG T+++G ++++V + +IDF Sbjct: 656 LENT-IEGLVHISTLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEIDF 714 Query: 723 SLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKK 782 + P + + K KG R++ + + + + +K + Sbjct: 715 EYL-----PSELDLIDKAAKAKKKPDHKG--RKKSNQSLKVKSVAPKSTDKSANKSKNGR 767 Query: 783 DARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 A + + K +K A +AAK K + Sbjct: 768 RADEKFEFDKKKKKSAKKPFYSKAAKGKFTD 798 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 217/721 (30%), Positives = 351/721 (48%), Gaps = 30/721 (4%) Query: 24 ILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I L + E+ + ++A +LHI + + L ++L ++ ++V R Y Sbjct: 34 IFSVLQEHPEESFNYKQIAAKLHITDAPRRDMLVKQLVQLKEKKRIVEIDRGKYQAIPMQ 93 Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARI 141 GT+ G G++ V+G +D++++ + +HGD V R + + E I Sbjct: 94 HYYVGTLDVSARGNGYVIVDGLDNDIFVAQNFLNKALHGDLVEVYVFPRFRNRNKMEGEI 153 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 +VL + VG FVVP D+R+ D + D++ GA+ G V+V + Sbjct: 154 SKVLERNKVRFVGTVQMHKNFAFVVPTDARMYTDFFVLKDKLNGAQDGDRVIVRIEDWKD 213 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 + +G + ++LG + L + +PY +P+ VE L + +E A R Sbjct: 214 KSDSPMGVVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVEAFAKKLDLSITDEEIARRR 273 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 D+R+ TID DA+DFDDA+ + G + + V IADVS+YV+ T LD EA NR T Sbjct: 274 DMRENLTFTIDPRDAKDFDDALSFKLLENGNYEIGVHIADVSHYVKEGTILDEEAYNRAT 333 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVY +V+PMLPEVL N CSL P D+ ++ K + V S R Sbjct: 334 SVYLVDRVVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKKAEVVDIWIGRTVTHSSFRF 393 Query: 382 TYTKVWHILQG---------------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 Y + +++ R A +V+ + L+ L + L + R G Sbjct: 394 AYEEAQSVIEQAKVGEGYTIPAETSITDKERAIPAEVVEAILTLNTLAEKLRRKRMRLGA 453 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 I+F+ E KF + + + +A+KLIEE M+LAN A +V K K+ ++R+H Sbjct: 454 ITFDKVEVKFDLDENGNPTGVYFKESKEANKLIEEFMLLANRKVAEYVAKMKKTFVYRVH 513 Query: 487 DKPSTEAITSFRSVLAELGLELPGGNKPEPRD-YAELLESVADRPDAEMLQTMLLRSMKQ 545 D+P + + F +V++ G L N+ D LLE V + + ++ T+ +RSM + Sbjct: 514 DEPDADKLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEVKGKKEQNLVDTLAIRSMAK 573 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A Y +N GH+GLA + Y HFTSPIRRYPD+ +HR ++ L ET Sbjct: 574 ATYTTKNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYLDNAPSQPEAEYETK----- 628 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 +H S E A A RD +++ +M F GVIS VT +G +V + Sbjct: 629 -------CKHSSQMESLAASAERDSIKYMQVKYMEAHKNQQFAGVISGVTEWGIYVEITV 681 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +GLV + +DYY FD+ L+G+++G+TY+LGD V +RV+ ++ ++++DF LI Sbjct: 682 NKCEGLVRARDIKDDYYTFDEQQYALVGQATGKTYQLGDEVMIRVKNTDLMKKQLDFELI 741 Query: 726 S 726 Sbjct: 742 D 742 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 281/826 (34%), Positives = 444/826 (53%), Gaps = 109/826 (13%) Query: 22 EFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + IL+H+ ++ + A+ +L E+ + G ++ + L RRL ++ + G+LV YA+ + Sbjct: 5 QQILDHIERQAHQSANFKQLVREMRLRGPDR-DQLGRRLESLVKRGKLVTAAAGRYAMVK 63 Query: 81 RL---DLVKGTVIGHRDGYGFLRVEGRK------DDLYLSSEQMKTCIHGDQVLAQPLGA 131 +L+ G + HRDGYGF+ + D+Y+ + + +HGD+VLA+ + Sbjct: 64 TTRAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEIVAT 123 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP--------DQI 183 + GR E RI+R L + +VG + + V FV P D +++ DI+IP ++ Sbjct: 124 KKDGRAEGRILRTLNRAHTSVVGTFHYDK-VNFVRPIDEKITQDIVIPKGMEWPPDVERE 182 Query: 184 MGAR-----------------------MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGT 220 G + VV VE+T+ P+ G++VE+LG Sbjct: 183 EGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQSPRGRVVEILGYEDDF 242 Query: 221 GMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFD 280 G+ +I +R H +P+ +P AV + E+P + R D R+LP+VTIDGE ARDFD Sbjct: 243 GVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDFD 302 Query: 281 DAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNG 340 DAV G + L V IADV++YV + +D EAR RGTSVYFP + +PMLP LS Sbjct: 303 DAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELSTD 362 Query: 341 LCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY 400 +CSL PQV+RL + C M + +G + GY+ E V+ S R+TYT V +LQGD +LR +Y Sbjct: 363 ICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRSAERMTYTAVHGVLQGDTELRTRY 422 Query: 401 APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 APLVK+ E + +L +L+K R++RG I F+ E F+ ++ + +++RN+AH+LIE Sbjct: 423 APLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRLIE 482 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG--------------- 505 E M+ AN S A ++E K +L+RIH+KP + + F ++ A G Sbjct: 483 EFMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERVHL 542 Query: 506 ----------------LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 +E+P PR Y +L + + +P+ +L ++LRS++QA Y Sbjct: 543 KADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQARYS 602 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET---------- 599 +N GHF LA SY HFTSPIRRYPDL +HR +K +L ++ + Sbjct: 603 EKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNEVD 662 Query: 600 GGYHYS------------------------MEEMLQLGQHCSMAERRADEATRDVADWLK 635 G +S E++ Q+ + S AERRAD+A R++ +W K Sbjct: 663 GHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEWKK 722 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 FM D+VG F G+I SVT +G FV L DLF++GLV + +L D++ + + ++L+GE Sbjct: 723 IKFMQDRVGEEFTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFNYHENTKQLIGER 782 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 S +TY LGD+V V ++ ++ +RK+ F+++ E R GK + + Sbjct: 783 SRKTYSLGDKVRVILDRIDRMQRKLQFAVVEDEPH-RAEGKHKKSR 827 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 259/692 (37%), Positives = 403/692 (58%), Gaps = 15/692 (2%) Query: 36 SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDG 95 ++A L + G+++ + L++ +R ++++G++ + + E ++V GTVI + G Sbjct: 22 HFLQIAKALGL-GKKERKTLKKVMRKLKKEGKVKVVKGKYEYTGE--EVVTGTVIAYPGG 78 Query: 96 YGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGR 155 +GFL VEG K D+Y+ +M HGD V A+ + KG++E RI++VL IV + Sbjct: 79 FGFLEVEGGK-DIYIPPFEMVKVFHGDVVKAKVT--EFKGKKEVRIIKVLKRAKKDIVAK 135 Query: 156 YFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 E +VVP D IL+ + G VVV+++TQ PT+++ A GK++EVLG Sbjct: 136 VVFEDEQCYVVPLDENAHHRILLSKKDCQKLKEGEVVVLKITQFPTKKSPARGKVIEVLG 195 Query: 216 DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGED 275 + +A+D+ +R + +P +P+ V ++V + EE+PEE R DLR+ TID E Sbjct: 196 NPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRRDLREQLCFTIDPEK 255 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 A DFDDAV E G ++L+V IADVSYYVR T D+EA RG + YFP + + MLPE Sbjct: 256 AGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGFTYYFPDRALHMLPE 315 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD 395 LS LCSL P D+L EM G L Y YE+V+ S ARLTY + ++ GD Sbjct: 316 KLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKARLTYNEALALIVGDPA 375 Query: 396 LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDA 455 L +++ LV+ L + LY++L + R E G I F+ EA+ I + I +R+ A Sbjct: 376 LEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDEYGEPTAIYPYERHVA 435 Query: 456 HKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 H++IE MI AN + A +E A P L+R+H+ P E + + +L LG ++ ++ Sbjct: 436 HRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEILEGLGYKVKRPHEYT 495 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 P+ + +++E RP+ +++ + LR+M +A Y P N GHFGLAL+ YAHFTSPIRRYPD Sbjct: 496 PKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLALEHYAHFTSPIRRYPD 555 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 + +HR +K L E+ Y ++ + + G H S ER ADEA + D+LK Sbjct: 556 IIVHRLLKKALRGEEI---------DYEKTLAYLEEAGNHLSKQERIADEAEMEAIDYLK 606 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 +M ++G F G+I+ V FGFFV L++ ++GLV +++L +D Y FD+ RL+G Sbjct: 607 ARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINTLTDDEYVFDEPAHRLVGVR 666 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +G+ +RLGD V+VR AV+ + +++F LI Sbjct: 667 TGKVFRLGDHVKVRCIAVDEERARVEFELIEK 698 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 247/785 (31%), Positives = 406/785 (51%), Gaps = 30/785 (3%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R ++ + + E++ + + + L + L A+E +G L R + L Sbjct: 6 RTVLVSFFEEYAPESFYVKEISEHFGMNQSQDFKILVKELAALEEEGILELNRNGKFGLN 65 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV---LAQPLGADRKGR 136 +KGT + G+GF+ V + D+++ + + GD+V + +P + R+ Sbjct: 66 PLNQTLKGTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEVELVITEPADSYRQRS 125 Query: 137 REARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 +IV+++ T+Q+VG Y G VV D +L+ + + Sbjct: 126 ATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKLAGTRCLIRPNGLHPVD 185 Query: 189 GFVVVVELTQR--PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 G VV+VELT+ R+ G +V+ +G GM + + L+ IP +PQ V Q Sbjct: 186 GTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMVLQQLHIPTEFPQEVIDQAN 245 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + E + +E + GR DLR VTIDG DA+D DDAV K+ G + L V+IADVSYYV Sbjct: 246 LVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLDDAVALTKREDGTFELTVSIADVSYYV 305 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 ++ +DREA RGTSVY +V+PMLP+ LSNG+CSL+P +RL M C M + G + Sbjct: 306 TENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTMSCRMEIDRSGTIY 365 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 Y+ + +V+ S RLTY+ V + + + E + + L ++ L+ +L++ R+ERG Sbjct: 366 QYEIFPSVIRSDMRLTYSLVNELYEKKE--VEIQDEIQQMLLDMKELHHILERRRKERGA 423 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 I FE+ EAK I + + I+ +R A +LIE M+ AN + A ++ P ++R+H Sbjct: 424 IDFETHEAKIIVDEQGAPIDIQIRERGVAERLIESFMLAANETVAMHYQRKNVPFIYRVH 483 Query: 487 DKPSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 ++P E + F + G+ + G + P+ + L+ V ++ TM+LRSMKQ Sbjct: 484 EQPQQEKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDEVKGETYEAVVSTMMLRSMKQ 543 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A YD GH+GLA + Y HFTSPIRRYPDL +HR I+ G+ + Sbjct: 544 AKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQY-----EGSGSFLSKQQEELN 598 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 ++ ++ S ER A +A R+V K +FM D++G F+G++SSVT FG FV L + Sbjct: 599 ASKLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIGQEFEGIVSSVTKFGMFVELPN 658 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++GLVH++ ++ DY+ F + L+GE +G TYR+GD V+V++ V+++ +IDF L Sbjct: 659 T-VEGLVHITHMNQDYFNFIESHLVLIGERTGVTYRIGDCVKVKLIKVDVEAHEIDFILA 717 Query: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 + K + GK+ K+ + + + + + + + KA K R Sbjct: 718 ADNADLITQNK-------RPTKGKEVPKKATKKESRSKKSKKSSKNKGRQHFKAQAKQKR 770 Query: 786 KAKKP 790 + K Sbjct: 771 RKKHS 775 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 258/770 (33%), Positives = 400/770 (51%), Gaps = 67/770 (8%) Query: 24 ILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE-R 81 I+ H+++ A+ +L E+ ++G ++ + L L + G+L+ R Y + Sbjct: 6 IVAHISRLPHARANFKQLVREMGLKGAKR-DELDTALDRLVARGELIELRSGEYTVTSLS 64 Query: 82 LDLVKGTVIGHRDGYGFLRVEGR----KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + V G + HRDGYGFL + + D+++ + +HGD+VL + + GR Sbjct: 65 REFVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEPDGRA 124 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR---------- 187 + IV+VL + +VG + +VVP D RL + IP Sbjct: 125 DGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGVT 184 Query: 188 ----------MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 G +V VE+ + R VG++VE+LG G+ V+I +R H +P+ + Sbjct: 185 APKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVDVEIVIRKHHLPHQF 244 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 P V +Q + +P GR D R + +VTIDGE ARDFDDAV+ +K G + L V Sbjct: 245 PPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVLHV 304 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADVS+YVRP TP+DREA RGTSVYFP + +PMLP LS LCSL P DRL + M Sbjct: 305 HIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSALM 364 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 + +G + +F E V+ S AR+TYT V +L+GDQ LRE+Y PLV E + L VL Sbjct: 365 EIDHRGEVVRQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELALVL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 ++ R RG I F+ E F+ + + + RN A++LIEE M+ AN S A +E A Sbjct: 425 NRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHLENA 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGG-------------------------- 511 +++RIH+KP + + F V A G+ L G Sbjct: 485 GIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAIVLA 544 Query: 512 --NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 R Y +L+ + +P+ +L ++LRS++QA Y EN GHF LA +Y HFTSP Sbjct: 545 DNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHFTSP 604 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR ++ +L + E+ + CS +ERRA +A R+ Sbjct: 605 IRRYPDLIVHRLLRAVLLGKPTP------------DESELGPIADDCSQSERRAADAERE 652 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + +W K FM D+VG F ++ S T +G FV L +LFI+GLV + +L +D Y + + + Sbjct: 653 LVEWKKVKFMADRVGEDFDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQENVR 712 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAR 739 +++G+ + + + +GD++ V ++ ++ ++RK+ FS+ + R Sbjct: 713 KVVGKRTRRQFSIGDKLRVVLDRIDANDRKLQFSIFEVVPQRTKQKRRPR 762 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 276/839 (32%), Positives = 417/839 (49%), Gaps = 67/839 (7%) Query: 22 EFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E ILE+L K K S E+ L + + E ++ L + + G+L+ RR YALPE Sbjct: 3 ERILEYLRKNPTKTYSLREVQRMLRL----EREEVKSALAELVKQGRLIEPRRGLYALPE 58 Query: 81 RLDL-------VKGTVIGHRDGYGFLRVEG-----------RKDDLYLSSEQMKTCIHGD 122 G + H G+GF+ + + DLY+ E + HGD Sbjct: 59 AKPAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAWHGD 118 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 QVLA P R R ++ +VL S++ GR G +V+PDD RL + + P+ Sbjct: 119 QVLAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLEPEG 178 Query: 183 IMGARMGFVVVVEL--TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G G + VEL Q + + +E LG + H++ + Sbjct: 179 LAGLEQGARIAVELHFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLKSEFDPE 238 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + + E +P E A R D R L + TIDG DA+DFDDA++ E+ G +R+ V IA Sbjct: 239 ALAEAEAIPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIA 298 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR + LD+EA RGTSVY P +V+PMLPE LSNG+CSL P DRL + + ++ Sbjct: 299 DVSHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEIT 358 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 GR+ + F E V+ S ARLTYT+V +G + + +++ L L L L + L Sbjct: 359 DGGRVLRHSFREGVIRSKARLTYTQVQAFAEG-KGMPDEFKWLEPDLALLLELTRKLKAK 417 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F E K I I QT+ DA LIEE M+LAN A+++ P Sbjct: 418 RVAAGALDFHFTEVKVDIGEAGEIHLIPQTEP-DARSLIEELMLLANRIVAKYLSDKGLP 476 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+R+H+ P+ A + L++LG ELP G +P P+ +L+ V +P+A M+ T+LL Sbjct: 477 ALYRVHEDPTDMAYAKLAAQLSKLGYELP-GMEPSPKAMQAILKQVEGKPEAPMVSTLLL 535 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+K A Y EN GHFGLA + Y HFTSPIRRYPDL +HR +K L+ + Sbjct: 536 RSLKLARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMRR-------RLTPE 588 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + E ++ +H S ER A+ A RD+ + +C + G F GV+S VTGFG F Sbjct: 589 KVEHWREVFPRMAEHTSSRERSAEAAERDLTKYYQCCWAELHKGERFGGVVSGVTGFGVF 648 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L++ ++G+V +SSL +D+Y + + L+G + + R+GD +EV ++ VN+ R+I Sbjct: 649 VALEN-GVEGMVRLSSLLDDHYEYVEETLSLVGTRTKRRIRIGDPLEVVIQGVNLPTRQI 707 Query: 721 DF------------------SLISSERAPRNVGKTAREKAKKGDAGKK--------GGKR 754 + S S + K +R K K + KK G +R Sbjct: 708 ELVPAEFAAVRPSNTAKPEISREVSRKPVLATTKPSRTKEKNMEGTKKRRVVGPPEGRER 767 Query: 755 RQVGKKVNFEPDSAF---RGEKKTKPKAAKKDARKA--KKPSAKTQKIAAATKAKRAAK 808 R+ G KV + E +T P+ + R ++ + + + A + + A+ Sbjct: 768 RERGPKVTMSRMYFGEWQKTEDETPPQNRRSGGRSGQHERAGGERSRSSQAGQPRHEAR 826 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 297/890 (33%), Positives = 443/890 (49%), Gaps = 108/890 (12%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 RE + + A L L + G + L L + G+LV ++ +AL Sbjct: 2 TDRELLRHIERSPGQRAGYKHLVRILGLGGGRERRLLLEHLSRLTAAGRLVKVDKEHWAL 61 Query: 79 PE----RLDLVKGTVIGHRDGYGFLRV--EGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 + R +LV G + HRDGYGF+R D+++ ++ T + GDQVL + Sbjct: 62 AQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAMQGDQVLVEVFPKR 121 Query: 133 -RKGRREARIVRVLVPKTSQIVGRYF-------------------TEAGVGFVVPDDSRL 172 + R RIVRVL + +VG++ + +VVP D R+ Sbjct: 122 PGEDRMAGRIVRVLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGPQYPGHYVVPFDERM 181 Query: 173 SFDILIPPDQIM--------------------GARMGFVVVVELTQRPTRRTKAVGKIVE 212 + ++IP D+ + G VV VE+T+ PT A G+++E Sbjct: 182 TQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITEWPTPTRPARGRVIE 241 Query: 213 VLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 VLG+ G+ V++ +R H +P+++P+ V + + + E A R D RDLP+VTID Sbjct: 242 VLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVA-HLDGEVVAARRDFRDLPIVTID 300 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 GE ARDFDDAV + G W L V IADV+ YV P + LD EAR RGTSVYFP + IPM Sbjct: 301 GETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLEARLRGTSVYFPDRAIPM 360 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG 392 LP+ LS +CSL P DRL + C M + + G++TGY+ E V+ S R+TYT+V IL G Sbjct: 361 LPQELSTDICSLRPGEDRLVLSCLMQMDAHGQVTGYEVTEGVIRSAQRMTYTQVQAILDG 420 Query: 393 DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQR 452 D + R+ + PLV E ++ L ++L+ RE RG I F+ E F+ ++ + + +R Sbjct: 421 DAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPVIEFDEFGAMKAVTRAER 480 Query: 453 NDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN 512 A++LIEE M+ AN A ++E PA++RIH+KP + F + A G L GN Sbjct: 481 LWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVVEFEEIAASFGYSLGIGN 540 Query: 513 KP-----------------------------------EPRDYAELLESVADRPDAEMLQT 537 P P+ Y +L +A +P+ ++ Sbjct: 541 LPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQKLTAKLAGKPEERIVAY 600 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL----------- 586 ++LRS+KQA Y +N GHF LA +Y HFTSPIRRYPDL +HR K LL Sbjct: 601 LMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHRIAKALLEAGVDGHGVVA 660 Query: 587 -AKEQGHQGNTTETG----GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD 641 + H+ ++ G + E+ + Q S ERRA EA R++ +W K FM D Sbjct: 661 MGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAAEAERELVEWKKIKFMRD 720 Query: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS---LDNDYYRFDQVGQRLMGESSGQ 698 +VG F G+I S T +G FV L+DLFI+GLV + S LD D Y + + + ++G+ G+ Sbjct: 721 RVGEDFDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDRYSYRENTREIIGDGHGR 780 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVG 758 T+R+G RV V ++ V+ E+++ FS++ E K + K K G + Sbjct: 781 TFRIGQRVRVLLDRVDAMEKRLQFSILLDEEEATAARK---PRGKSAGKSKSAGHSKTGA 837 Query: 759 KKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAK 808 KK + S + E+ + KK RK K+ SA A AKR A+ Sbjct: 838 KKTHAAAASERKAERPARTANPKKSGRKKKRFSAD----AVPDFAKRVAQ 883 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 295/733 (40%), Positives = 431/733 (58%), Gaps = 17/733 (2%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DP ++ EA+KY NPIPSRE IL ++ P S + +A L I + +GL RL Sbjct: 6 IHNDPNKDLEAQKYENPIPSREVILNYIRDTNIPVSIENIANALEIFKKNLFDGLVNRLG 65 Query: 61 AMERDGQLVFTRRQCYALPERLDL-VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 AM RDGQL R Y+LPE + + V RD L + + S Q K + Sbjct: 66 AMVRDGQLEKDR-SYYSLPEIAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQAKMVM 124 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD+V A+ LG +++GR +A I ++ I G Y+ F+ P ++ DI++ Sbjct: 125 VGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVSKSMTSDIVLL 184 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P + ++ E+ P+ + AV K + + A+ +A + +++ W + Sbjct: 185 PPK-QKIEHNSLIEAEIIVYPSINSVAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQWSK 243 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 + + + ++V RVDLR+ VTIDGEDA+DFDDAVY K + G W+L+VAI Sbjct: 244 KTLRYLDDISDDV---IVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAI 300 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVS YV + LD +A+ R TSVYFP VIPMLPE LSNGLCSL P DR +VCEM + Sbjct: 301 ADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNI 360 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVLD 418 S +G+L+ YKFY AV++S ARLTYT+V +++ Q+ + E+ LV ++ +L+ LYKVL Sbjct: 361 SKEGKLSRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVLH 420 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 +AR+ERG I F++ E + I N IE I RNDAH+LIEECM++AN++AA+F K K Sbjct: 421 QARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK 480 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGN--KPEPRDYAELLESVADRPDAEMLQ 536 + + FR+H +P + + + + LA+ G+ L G K P+ AE+L+S+ DRPD + +Q Sbjct: 481 KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDIQ 540 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M LRSM QA+Y N GHFGLA Y HFTSPIRRYPDL +HR IK ++ + Sbjct: 541 MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGE-------- 592 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 E GG Y E+ + ++ S ER AD A++ V +WLKC FM D +G+V + I V G Sbjct: 593 YEHGGADYKPSELANICENASDQERNADGASKQVENWLKCYFMQDYIGHVLEAQIKHVNG 652 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 G F L D++I+GL+HVS++ DYY +D+ L+G+ + + Y++G + VRV ++D Sbjct: 653 LGLFAELKDMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLD 712 Query: 717 ERKIDFSLISSER 729 IDF L + Sbjct: 713 RIHIDFELYDPRK 725 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 278/729 (38%), Positives = 424/729 (58%), Gaps = 18/729 (2%) Query: 5 PFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 P + A+ A P+ E +L L REK AS E+A L + + + L++ L ++R Sbjct: 62 PRGGKSAKPGAGPV---EAVLAFLHGREKGASATEIAAALAEQPDFDRQLLKKTLEELDR 118 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD------DLYLSSEQMKTC 118 G LV +RR Y+L L++ + H G+GF + D D++L + M + Sbjct: 119 RGWLV-SRRSRYSLAPDLEICPAELSMHPRGFGFAMLSESTDAARYHKDIFLPPDAMGSA 177 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 +HGD++L + R + E R++RVL + +VG Y + A G V P+D RL F +++ Sbjct: 178 VHGDKILVLVVKG-RADKAEGRVLRVLERGITSLVGIYVSGATSGLVTPEDERLPFKVVV 236 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 Q GAR G VVVE+++ + G+IVEVLGD + ++IA+R+H++P+ + Sbjct: 237 RRPQSGGARNGEAVVVEISRF-KEQGNPEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFA 295 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 A+ +V +++ E +A R+DLR++P VTID E ARD+DDAV E GG RL+V+ Sbjct: 296 PALLAEVEAYSDKI--EPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVS 353 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS+YV+P + LD EA RGTSVYFP +V+PMLPE LSN LCSL P DR M + Sbjct: 354 IADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIID 413 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVL 417 KG+ +F ++++ S RLTYTKV +L+ + +L +YA ++ LE++ L L Sbjct: 414 FDGKGQRKSARFGKSLIRSRHRLTYTKVKAMLEDREPELCRRYADILPDLEQIAKLAANL 473 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 ++ R RG I FE EA + + + I+ I + +RN AHKLIEECM+ AN + A F+E+ Sbjct: 474 NQVRMRRGSIGFEIPEADIVLDDDGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQ 533 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P L+RIH+ P +T F +GL+LP G +P P + ++L A P ++ + Sbjct: 534 QAPTLYRIHEDPDPVKVTEFAEFAGAMGLQLPKG-EPGPGWFGQVLALAAGTPREYIVSS 592 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 +LLRS++QA Y PEN GHFGLA Y HFTSPIRRYPDL +HR + L A E G + Sbjct: 593 LLLRSLQQARYAPENVGHFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQK 652 Query: 598 ETGGYH--YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + G ++ G S ER A +A R+ + L +M D+VG F V+S ++ Sbjct: 653 QPVGAQGLAPAADLATAGLELSRRERVAVDAERNATERLVALYMADKVGEEFDAVVSGIS 712 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L ++ I G V ++ L +DYY D RL+G +S + +++G+ + VR+ +V+ Sbjct: 713 SFGMFVELVEIMISGAVALTDLTDDYYEVDDKSHRLVGRNSNRIFQIGNPIRVRLSSVDQ 772 Query: 716 DERKIDFSL 724 R+++F + Sbjct: 773 RRRRLNFVI 781 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 212/716 (29%), Positives = 355/716 (49%), Gaps = 30/716 (4%) Query: 23 FILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP-E 80 IL + K+ + ++A + Q E + + L + D ++ + Y + + Sbjct: 22 LILGFMNKQSTKIYNYKQIADGIDYRNPRQRELVIQALHRLLSDQRVKEVEKGKYIINLK 81 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 V GT+ ++ G +++VE DD+++ S+ +K + GDQVL + + E Sbjct: 82 IEGTVSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLI-VTYHFKGKKLEGS 140 Query: 141 IVRVLVPKTSQIVGRYF--TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++ V+ + VG + GFVV D ++ DI +P +I GA+ G VVV++T Sbjct: 141 VLEVIKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFVPKGKIGGAQDGDKVVVKMTD 200 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 + G+I++VLG + L + +PY +P VE++ + + + A Sbjct: 201 WKSGEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEADDIDRTIHDSEVA 260 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R D+R + TID +DA+DFDDA+ +K G W + V IADVS+YV+P T LD EA + Sbjct: 261 KRRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHYVQPGTLLDDEAYD 320 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TSVY +V+PMLPEVLSN +CSL P D+ + + F V+ S Sbjct: 321 RATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADVVNEWFGRTVIHSD 380 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R Y + ++ L + + L L K+L K R G I+F+ E +F Sbjct: 381 RRFAYEEAQERIETGT------GDLAEEILTLDRLAKILRKERIRNGAITFDRSEVRFNL 434 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVE--KAKEP----ALFRIHDKPSTE 492 + + D++ LIEE M+LAN + F+ + EP ++RIHD P Sbjct: 435 DENSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTANTFIYRIHDDPDPT 494 Query: 493 AITSFRSVLAELGLELPGGNKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + + R + G ++ N + LL+ V + + M++T+ +RSM +A+Y Sbjct: 495 KLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIETLAMRSMSKAVYSTN 554 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GH+GL Y+HFTSPIRRYPDL HR +++ L + + ++ + Sbjct: 555 PIGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSP------------NKQDYEE 602 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +HCS ER A +A RD +++ FM +G F GVIS V FGF+V++ + +GL Sbjct: 603 KSKHCSAMERLAADAERDSIKFMQVKFMEKHLGEEFTGVISGVADFGFWVQIPENGAEGL 662 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + + L +D Y +D + G +G ++LGD+V ++V N+ ++++DF +I+ Sbjct: 663 IKLRDLMDDSYSYDPKNHLVHGARTGNQFQLGDKVRIKVMKANLIQKQLDFKIITD 718 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 259/714 (36%), Positives = 367/714 (51%), Gaps = 22/714 (3%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R IL L K ELA L + E + L +E + + Y Sbjct: 27 RRAILSLLRNNAHKAFRPKELAKLLDLRDYEAYQRFWEVLSELEHQHLVARVKGGRYTYE 86 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRK-GRR 137 R V+G + H GYGF+ +EG++ +D+Y+S M T + GD+VL R RR Sbjct: 87 RRPYRVEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALDGDRVLVGLAAPARGDRRR 146 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E +++VL + Q VG ++ FVVPDD RL+ DI +P + GAR G VVV + Sbjct: 147 EGEVLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYVPREAFNGARAGDKVVVSID 206 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + + G+++EVLG + V + ++ +P+A ++ + + +PE Sbjct: 207 RFDDPKASPEGRVLEVLGPASDPRVQVLALALSKDVRTGFPEAALKEAERIPDTIPEREY 266 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R+DLRD + TID DA+DFDDA++ + G + V IADVSYYVRP + LD EA Sbjct: 267 RRRLDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAY 326 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLPE LSN +CSL P D+L M ++ R+ Y+ E V+ S Sbjct: 327 QRGTSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHS 386 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R TY + I+ G PL + + H L + L KAR E G I F+ E K Sbjct: 387 RQRFTYEEAQAIIDG------ADHPLAEPVRLAHELAQKLRKARMEAGAIDFDLPEVKVE 440 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE--PALFRIHDKPSTEAIT 495 + RI + +R AH+LIEE M+LAN A + K E P ++RIHD+P E I Sbjct: 441 LDEAGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPDAEKIR 500 Query: 496 SFRSVLAELGL--ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + G EL + ELL+ V P+ +++ LR+M +A Y +N Sbjct: 501 QLAQYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQNI 560 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GH+GLA Y HFTSPIRRYPDL +HR +K L K + +E+ Sbjct: 561 GHYGLAFDFYTHFTSPIRRYPDLMVHRLLKQYLKKAE---------KAPVVDADELEARC 611 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +HCS ER A+EA RD + + +M VG F+GV+SSVT FG FV L+D+ ++GLVH Sbjct: 612 RHCSERERAAEEAERDSVRFKQVQYMQQHVGERFRGVVSSVTNFGVFVELEDVLVEGLVH 671 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 V + +DYY +D+ L G SG+ YR GD VEV V + R+ID + Sbjct: 672 VRDMGDDYYEYDERRYTLRGMYSGKRYRPGDVVEVVVVRADPATRQIDLRFVEP 725 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 238/770 (30%), Positives = 383/770 (49%), Gaps = 40/770 (5%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA---LPERLDLVKGTV 89 +P + + ++ L +E+DG+LV+ + Y L + + G V Sbjct: 47 RPFDVHD---HFGVHDKKVRLLFNEILHELEQDGRLVYNKNGTYHAAPLKTKPQGLTGRV 103 Query: 90 IGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL---------GADRKGRREAR 140 G+ F+ +EGR+DD+Y+ E + GD V QPL G + R E R Sbjct: 104 ERVNKGFAFVVIEGREDDIYVDLELLNGAWDGDIVQVQPLSKNLRSKGRGDSGRNRTEGR 163 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + ++ ++IVG V PD+ RL I + PDQ+ AR G V+V++T+ Sbjct: 164 VTDIVERSNAEIVGIIEINPRFAVVQPDNKRLYDPIYLEPDQVGAARHGDKVIVKVTEWS 223 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 TRR++A G+IV VLG + + L +PY +P VE + + ++ ++ A R Sbjct: 224 TRRSQAEGEIVSVLGAAGNNDVEMHAILAEFGLPYHFPDEVEAEAQKIPNKIVKKDLAKR 283 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 D+RD+ TID DA+DFDDA+ + V IADVS+YV P T L++EA R Sbjct: 284 RDIRDVLTFTIDPVDAKDFDDALSVRYLDEDVVEVGVHIADVSHYVLPGTELEKEALRRA 343 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY + +PMLPE LSN LCSL P DRL ++SKG+L F V+ S R Sbjct: 344 TSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEITSKGKLLKEWFGRTVIHSDRR 403 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 TY + +L + K L+ L+ L K+ K R ++G I+FE+ E +F + Sbjct: 404 FTYEEAQAVLDSGEG------DFPKELDTLNKLAKIFRKERFKKGAINFETPEVRFRLDP 457 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-----KEPALFRIHDKPSTEAIT 495 E R I +R+D++KLIEE M+LAN A +V K ++RIH+ P + + Sbjct: 458 EGRPLGIYTKERHDSNKLIEEFMLLANKRVAEYVYSLSKGEDKNTMVYRIHEAPDPDRLQ 517 Query: 496 SFRSVLAELGLELPGGNKPE-PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 +F + +A+LGL+L + + + +L V +P+ +++++ +R+M +A Y E+ G Sbjct: 518 TFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKPEQNLIESLAVRTMAKARYSTEDLG 577 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLA + Y+HFTSPIRRYPD+ HR +++ L GG + E + + Sbjct: 578 HFGLAFRRYSHFTSPIRRYPDVMAHRLLQHYLD------------GGANVDQETYERASK 625 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGN-VFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S ER A EA R + + ++M F G+I+ VT FG FV + + +GL+ Sbjct: 626 HSSERERLAAEAERASIKYKQVEYMSMMDPEKEFGGIITGVTEFGIFVEITETASEGLIR 685 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 ++ L +DYY D+ R++G+ + + Y GD V+V+V+ N+ R +D L ++ R+ Sbjct: 686 MTDLGDDYYELDKENYRVIGQHTKKIYAFGDAVKVKVKETNLARRSMDLYLAGTKPGRRS 745 Query: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKD 783 + ++ + G G K K +++ Sbjct: 746 EFSRPDFGRDRDRRPRERKPKEPRGSGRVKRGAGGTGGGSSAKVKRRRRN 795 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 245/718 (34%), Positives = 384/718 (53%), Gaps = 16/718 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE +L + K + K + ++L+ LH E + + L A+E + L +R+ Y Sbjct: 12 REELLALIEKSDYKGMNVEQLSHTLHKEEHALFVEMMKELNALEAEHILARDKRERYFFS 71 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 ++L V G + + G+GF+ + Y++ ++++ + D+V A+ + G RE Sbjct: 72 KQLGYVVGKLRVNPKGFGFVEYDEG--SFYVAPDKLRFALDQDEVYARSW-TNNDGSREG 128 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 IV V+ + +VG G + +PD + I V+V + Sbjct: 129 EIVEVIKHNINNVVGVVKMREGRKYFLPDADIYNRPFKITNYDDFHLVHDSKVLVHIDSY 188 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + I + +G G+ + L +I +P+ V ++V + E + + A Sbjct: 189 GST---LKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVMEEVMQIPEALQSKEYAN 245 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR L +TIDGEDARD DDA+ EK G +RL+V IADVS+YV + LD+EA R Sbjct: 246 RKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVSHYVTAGSALDKEAYAR 304 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY +V+PMLP LSNG+CSLNP+VDR + C M ++ KG + Y+ Y +V++S Sbjct: 305 GTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVIDYQIYPSVINSDE 364 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TYT V IL+GD+ +++QY L+K ++ L ++ K RE+ G I F++ EAK + N Sbjct: 365 RMTYTAVNAILEGDEQVQKQYPHLLKMCLDMKVLSGIIRKRREKLGAIDFDTNEAKILVN 424 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + + I +R +A ++IE+ MI AN + A V + P++FRIH++P + I F Sbjct: 425 EKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQPEPKRIREFAR 484 Query: 500 VLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + LG GG P +L+ + +L T +LRSM++A YD GHFGL Sbjct: 485 IAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARYDRRCIGHFGL 544 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 AL++Y HFTSPIRRYPDL +HR ++ +G Q + + + S Sbjct: 545 ALKNYLHFTSPIRRYPDLVVHRMLRKYFF--EGLQDSEKMARDEQW----IEDAAYQASE 598 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A +A R V D K ++M ++ + GVIS +T FG FV L + ++GLVH+S++D Sbjct: 599 RERNAIDAERAVEDMKKAEYMEGRIDRQYDGVISGITRFGLFVELANT-VEGLVHISTID 657 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 +DYY +D + L+GE S YR+G RV V A N +R+IDF L+ ++ GK Sbjct: 658 DDYYHYDDETKCLIGEHSANVYRMGQRVRVVCVAANRFKREIDFELVVKKKKKHRRGK 715 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 192/716 (26%), Positives = 340/716 (47%), Gaps = 25/716 (3%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 S I TK + S +L+ L++ + M D L + Y L Sbjct: 18 MSERLISLFHTKPNETFSLKQLSSSLNLTTHPLKMLCADIITEMIEDDFLQEVEKGHYKL 77 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 + ++ G +G + + ++++ ++ D+V + E Sbjct: 78 NDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNNDKVKIALFAKRKNRNPE 137 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++ +L VG E F++ ++ L+ DI IP D++ G + G VV++ + Sbjct: 138 GEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFIPKDKLKGGKNGDKAVVKIVE 197 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P +G+++++LG + L +PY++P+ VE + E+ E A Sbjct: 198 WPEEAKNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYPKNVETAAEKIPAEISEADYA 257 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R D R++ TID +DA+DFDDA+ + G W + V IADV++YV+ +D+EA Sbjct: 258 EREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVIDKEAEK 317 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TSVY + IPMLPE L N +CSL P ++L ++ KG + + ++ S Sbjct: 318 RATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVHTIIKSD 377 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R TY + +++ + + + EL+ L ++L K R G I F+ E KF Sbjct: 378 RRFTYEEAQKVIETGE------GDYKEEILELNKLAQILRKQRLAAGAIDFDRVEVKFEI 431 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP-----ALFRIHDKPSTEA 493 + + + + +A+KLIEE M+LAN + A + K + +RIHD P + Sbjct: 432 DETGKPLSVYFKESKEANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLPDPDK 491 Query: 494 ITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + + + G ++ + LL+ + ++ + +++T+ LR+M++A Y Sbjct: 492 LENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKARYSTH 551 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N GH+GLA Y HFTSPIRR+PD+ +HR + LA + Q + + Sbjct: 552 NIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGRTVQ------------EAKYEE 599 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 L H S E+ A A R + + +FM +++G F GVIS VT +G +V L++ +G+ Sbjct: 600 LCDHSSEMEQIAANAERASVKYKQVEFMGERLGMEFDGVISGVTEWGLYVELNENKCEGM 659 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + + L +DYY FD+ L G + + LGD V ++V N++++++DF+L+ Sbjct: 660 IPMRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKKQLDFALVEK 715 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 260/810 (32%), Positives = 395/810 (48%), Gaps = 33/810 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQL---EGLRRRLRAMERDGQLVFTRRQC 75 P++ ++ L K +P +L + +L L L + G +V TRR+ Sbjct: 185 PAQALVVAQLRKLGRPVHVRDLERTFTRQMMNRLGDWRDLEALLETLVESGTVVRTRRRT 244 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ-------- 127 Y LPE + LV+G G+GF+ + +D Y+ +EQ +GD VL + Sbjct: 245 YGLPEAMSLVRGKFQASAAGFGFVVPDSGGEDYYIPAEQTLEAWNGDIVLVRMEGRGDSG 304 Query: 128 -----PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 G G A +VR++ S++VG G + PDD R IL+ P+ Sbjct: 305 RGGGPRRGQRGDGNPRASVVRIVQRAYSKLVGTLEFHHGHPILKPDDHRARHRILVLPEG 364 Query: 183 IMGARMGFVVVVELTQRP--TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G + G VV EL P T + G++V VLG+ + + + +P Sbjct: 365 LEGLQAGARVVTELF-WPENTGEDEVFGQVVRVLGEQDDPETETEAVIVKFGLRGEFPGE 423 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V + A + E+P EA GR+DLR+ + T+DG DA+DFDDA++ + G + + V IA Sbjct: 424 VMAEAAAIPTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIA 483 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR TPLD EA R TSVY P +V+PMLPE LSNG+CSL P DRL M + +S Sbjct: 484 DVSHYVREGTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQDRLTMTALVELS 543 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 ++G + K +V++S ARLTY +V + L + L L L + L + Sbjct: 544 AEGDILDVKIAPSVINSKARLTYDEVQAYSEATATLPDHARHLEGDLHLLLKITSKLRQK 603 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F+ E K + R+E I + A +IE+ M+LAN A ++ + + P Sbjct: 604 RLREGSLDFKMREVKVDVGPDGRMELIPIREET-ARGMIEDLMLLANKVVAHYLLQREIP 662 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFRIH++P+ + + LGL PGG +P P+ Y +L+ V P ++ T+LL Sbjct: 663 TLFRIHEEPTLQRFQEVSQAIGRLGLAFPGG-EPTPQAYQAVLKQVRGTPRESVVNTLLL 721 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR +K +L E Sbjct: 722 RSMQQAKYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHRVLKGVLGGELKAGNREVAKL 781 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + +G H S ER A EA RD+ + + + + + F G +S V G + Sbjct: 782 QGR-----LPAMGDHTSDRERTAAEAERDLTKYYQAKWAQEHLQETFAGNVSGVVASGLY 836 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V LD+ ++G +H+S+LD+DYY + + Q L G S G+T+RLGD V V + AVN R I Sbjct: 837 VALDN-GVEGKLHISNLDDDYYVYIEDAQMLRGRSGGRTFRLGDSVTVTISAVNPMARMI 895 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 D +L S + + K ++ + + K + P + + A Sbjct: 896 DLTLGDS------TQERDMNEVKPRARRREEREAERREKLQSVTPTAPRKFTLDDPQPAV 949 Query: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKK 810 + + ++ A + R + Sbjct: 950 QSAPARQERTGAGGRGYERDRSGDRRGPGQ 979 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 245/731 (33%), Positives = 385/731 (52%), Gaps = 39/731 (5%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ IL+ + P EL L + EE+ + L M+ +G + + + Y+ Sbjct: 10 KKIILDLIKDPSYHPMKEKELCFFLGVPKEEK-AAFQEILMEMQEEGVIGISLQGKYSRA 68 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RRE 138 E KGT +R G+GF+ + +++D+Y+ + + GD V G + E Sbjct: 69 ESFS-QKGTFHANRRGFGFVSLSEKEEDVYIPKGEAGNAMDGDLVKVILTKKSENGSKAE 127 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 +I +VL +++G + ++ PD+ +L ILI P + GA G VV+E+ Sbjct: 128 GKISKVLERANKEVLGLVKEKREGLYLSPDNPKLPDCILISPGRDKGAVPGDKVVLEILS 187 Query: 199 R-PTRRTK-----------------AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 P++ K VG++ E+LG GM V +R+ +P +P+ Sbjct: 188 YGPSKENKAPRGRIPRKRISPLLSCPVGEVKEILGHKDDPGMDVLSVIRSFSLPEEFPED 247 Query: 241 VEQQVAGLKEEVPEE--AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK-KRGGGWRLWV 297 V + L V E + GR D R L +TIDGEDA+D DDA+ + +RL+V Sbjct: 248 VLLEANQLPNAVSPEKAEETGRKDFRKLTTITIDGEDAKDLDDAISLDYFPEKEEYRLYV 307 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADVS YV+ + LD EA RGTSVY +VIPMLP+ LSNG+CSL+ VDRLC+ C M Sbjct: 308 HIADVSDYVKEGSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLHEGVDRLCLSCIM 367 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG----DQDLREQYAPLVKHLEELHNL 413 +GR ++ +++ S+ R++Y KV +L+ D + + Y P + L ++ L Sbjct: 368 DFDREGRPLSHEITPSIICSNKRMSYHKVTALLEDKEWEDPEEKLSYLPFHELLTKMREL 427 Query: 414 YKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473 ++L K+R RG + F+ E+K F+ I +I +R ++HK+IEE M++AN + A Sbjct: 428 ARLLRKSRMARGALDFDFPESKVYFDENGNISKICAEEREESHKIIEEFMLIANETVAEE 487 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG--NKPEPRDYAELLESVADRPD 531 P L+RIH+KP E + VL+ L + P+ ELL + +P+ Sbjct: 488 YYWRDIPFLYRIHEKPDWEKWQNLSHVLSSFSYSLKAKDPDNLRPKALQELLSKLKGKPE 547 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 ML +M+LRS+KQA Y E GHFGLA + Y+HFTSPIRRYPDL +HR IK +A ++ Sbjct: 548 EAMLSSMILRSLKQAKYSTEPEGHFGLASKYYSHFTSPIRRYPDLQIHRIIKENIAYQEN 607 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 + + + + S+ ERRA+EA RD KC +M + +G VF G I Sbjct: 608 EKRR-------RHYERILPDVASQSSLRERRAEEAERDCMKLKKCQYMKNFLGEVFPGRI 660 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 S +T +G +V L++ I+G++ + + DYY F++ L GE+SG+T+ +GD + + V Sbjct: 661 SGLTQYGIYVTLEN-SIEGMIPLRFMTEDYYIFNEEEISLRGEASGKTFHMGDPMWISVY 719 Query: 712 AVNMDERKIDF 722 AV+ R IDF Sbjct: 720 AVDTLSRSIDF 730 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 244/725 (33%), Positives = 395/725 (54%), Gaps = 20/725 (2%) Query: 24 ILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I++ + K+ P + ELA + EE + L+ +E G++V +R+ YA P+++ Sbjct: 7 IIQFIHSKKYTPMTAAELAEHFEVNDEE-YRAFCKLLQDLEFQGEIVKIKRKQYANPKKV 65 Query: 83 DLVKGTVIGHRDGYGFLRV--EGRKDDLYLSSEQMKTCIHGDQVLAQ-------PLGADR 133 +L+ GT+ + G+GF+ +G D++++ E M + +HGD V+ + P + Sbjct: 66 NLLVGTMDCNSRGFGFVVPAKKGEGKDIFVNEENMNSAMHGDIVVVRLPDLEQIPKRGKK 125 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 KG +IV VL IVG + + +VVPD++RL D+ + A G VV Sbjct: 126 KGGGSGQIVNVLKRANPFIVGTFKKSKRLLYVVPDNARLFRDVYVTEGDAKDATPGDKVV 185 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 V++ Q P+R G+I E+LG + + + ++P + + V + + +E+P Sbjct: 186 VKIVQWPSRHLNPEGEITEILGKEGDPKVDLHSIIYQFKLPQAFHKKVSNEAEKISQEIP 245 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E R+DLR ++TID +DA+DFDDA+ EK G W+L V IADVSYYV+ + +D Sbjct: 246 QEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGVHIADVSYYVKQDSAID 305 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EAR RGTSVY P +VIPMLPE LSN LCSL DRL +T+ +G + + Sbjct: 306 KEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLVTIDPEGNILKSTVKHS 365 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++ RLTY + I+ + + L EL L ++L K + RG I + E Sbjct: 366 VINVTKRLTYKQATAIINN-ESAGNIPEMVKDVLVELAQLAQILFKNKMNRGAIELDLPE 424 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 + E IE++E+ +R+ +H+L+EECM+LAN A F+ K K P + R+H +P E Sbjct: 425 VSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFMHKNKLPLISRVHPEPDEED 484 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + F + GLE + + L + +P+A M+ +LL+SMKQA+Y Sbjct: 485 MLEFADFVR--GLENTRVDPFKIHQLQAFLAEIRGKPEAHMVNLVLLKSMKQAVYSATES 542 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHF LAL++YAHFTSPIRRYPDL +HR + + E + + Sbjct: 543 GHFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGE------LRSPVIQKMWENCLPEWA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 HCS+ ERRA+EA R++ F ++VG+ F+GVI+ V +GFFV+L + ++GLVH Sbjct: 597 GHCSVTERRAEEAEREITKLKLLRFFENRVGDNFEGVITGVQEYGFFVQLSEYLLEGLVH 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 + +L++D Y+ + L+G + +R+GD V+V++ +++ +R++DF + + Sbjct: 657 IRTLEDDIYQISKKHMALVGTRRKKMFRVGDVVKVKIYKIDLLKREVDFIPYENRNEKPH 716 Query: 734 VGKTA 738 GKT Sbjct: 717 RGKTR 721 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 260/812 (32%), Positives = 407/812 (50%), Gaps = 38/812 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLR---RRLRAMERDGQLVFTRRQC 75 P+RE ++ L K +P +L + ++L G R L + R G+++ TRR+ Sbjct: 252 PARELVIAQLRKLGRPIHVRDLERTFTRQMLDRLGGWRDLEALLDDLTRTGEVIRTRRRT 311 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 Y LPE + LV+G G+GF+ + +D Y++ E +GD VL + G G Sbjct: 312 YGLPEAMSLVRGRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDTVLVRMEGRGDSG 371 Query: 136 R-------------REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 R A + R++ +VG G + DD R IL+ P+ Sbjct: 372 RSPGPRRGQRGDGSPRASVARIVQRAYRHLVGTLEFSKGHPILKADDPRARHRILLLPEG 431 Query: 183 IMGARMGFVVVVELTQRP--TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G G VV EL P T + G+++ VLG+ + + + + +P Sbjct: 432 LEGLASGARVVAEL-YWPEQTGEDEVFGQVIRVLGEQDDPATETEAVIVKYGLRGEFPAD 490 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ + +P E+ GR+DLR+ + T+DG DA+DFDDA++ + G + + V IA Sbjct: 491 VLEEANAIPTRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIA 550 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR TPLD+EA R TSVY P +V+PMLPE LSNG+CSL P DRL + + +S Sbjct: 551 DVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPFEDRLTVTALIELS 610 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 ++G + K +V++S ARLTY +V + L E L L L + L + Sbjct: 611 AEGDILDVKLAPSVINSKARLTYDEVQAYSEATSTLPEHARHLEGDLHLLLKITSKLRQK 670 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F+ E K + R+E I + A +IE+ M+LAN A ++ + P Sbjct: 671 RLREGSLDFKLREVKVDVGPDGRMELIPIHEET-ARGMIEDLMLLANKVVAHYLIERGIP 729 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFRIH++P+ + + +A LGL PGG +P P+ Y +L++V P ++ T+LL Sbjct: 730 TLFRIHEEPTLQRFQEATAAIARLGLAFPGG-EPTPQAYQAVLKAVRGTPRESVVNTLLL 788 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS++QA Y EN GHFGLA Y HFTSPIRRYPDL +HR +K +L+ + Sbjct: 789 RSLQQAKYAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVLSGDLKAGSRAVAEL 848 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 ++ +G H S ER+A EA RD+ + + + + +G F G ++ V G F Sbjct: 849 -----RSQLPAMGDHTSERERKAAEAERDLTKYYQAKWAQEHLGERFSGNVTGVVSSGLF 903 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V LD+ ++G +H+S+LD+DYY + + Q L G S G+T+RLGD + V + VN R+I Sbjct: 904 VALDN-GVEGKLHISNLDDDYYIYLEDAQMLRGRSGGRTFRLGDPITVTISQVNPLARQI 962 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKK------ 774 DF+ + + N + + + +A K RQ + VN P F + Sbjct: 963 DFTQENDMDSNDNTARPRARRREDREAEK-----RQKLQSVNPAPPRKFTLDDPQPAVPS 1017 Query: 775 TKPKAAKKDARKAKKPSAKTQKIAAATKAKRA 806 P+ + + + + + A RA Sbjct: 1018 APPRQSGQGRGGRGQGQREGSQREANPSGGRA 1049 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 274/716 (38%), Positives = 387/716 (54%), Gaps = 18/716 (2%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P E I + +P S +EL EL++ + + L + L ++ G + RR Y Sbjct: 2 PFSIAEVIRQLQRFERQPFSINELLGELNLSRSLRRK-LVQFLDSLVVAGLIKHMRRGRY 60 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 + L LV + G+G L +LY+++ ++ + GD+V+A L R R Sbjct: 61 RVNRPLKLVCARLKHQSSGHGVLTDCDDGHELYVATFRLGGAMDGDEVMALELPESRGRR 120 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR--LSFDILIPPDQIMGARMGFVVVV 194 E IV V+ ++G + G VV + L+FD+ + + +G VVV+ Sbjct: 121 PEGWIVEVVKRSRETLLGVCEKNSRQGGVVFRSEQGGLTFDVD-DRSRDVSLLVGQVVVL 179 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 + + P +G IV+VLG + + + IP + AVEQ + + EVP Sbjct: 180 RIDRYPAMHENGLGHIVDVLGHAGSPEVDILSTVHRLGIPNRFSAAVEQAASAIAAEVPP 239 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E A R DL LP VTIDG DARDFDDAV + G WRL VAIADV YYV + LD Sbjct: 240 EVVAARADLCSLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIADVGYYVEEGSALDL 299 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EAR RGTSVYFPS+ +PMLP+ LSNG+CSL P+ +RL +V E+T GR ++ Y A Sbjct: 300 EARERGTSVYFPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDDLGRRLNFEAYRAT 359 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S RL Y +V +L G PL + L ++ +L + L R RG I F+ EA Sbjct: 360 IRSRQRLIYEQVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGAIDFDLPEA 419 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 IF+ E RI RI + R D+H+LIEE M+ AN + A F+ +E +FRIH+ P ++ Sbjct: 420 NVIFDDEGRIVRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIHESPDIRSM 479 Query: 495 TSFRSVLA--ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 SF+ LA LG+ L + R+ LL V + +LLRSMKQA YD EN Sbjct: 480 QSFQQFLATLNLGITLDE-DGISARELRRLLHEVEGTSLEFSVNRILLRSMKQARYDAEN 538 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA +Y HFTSPIRRYPDL +HR + +L + + E + +L Sbjct: 539 SGHFGLASDAYCHFTSPIRRYPDLLVHRLLLQILDGRADWEAD-----------EPLPRL 587 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 + AERRA EA RD+ D KC FM D++G + G I+SV FGFFV LD+ F++GLV Sbjct: 588 ADAATAAERRAMEAERDIVDLRKCQFMEDKIGTRYSGYITSVNAFGFFVELDEFFVEGLV 647 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 H+ +L +DYY FD+ L+G++ +T+++GD VEV V + R+IDF L E Sbjct: 648 HIRTLSDDYYVFDEERLILVGQARRKTFQVGDTVEVEVWQIKSAAREIDFVLPDLE 703 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 224/801 (27%), Positives = 376/801 (46%), Gaps = 55/801 (6%) Query: 8 EREAEKYANPIPSREFILEHLTKR---------EKPASRDELAVELHIEGEEQLEGLRRR 58 ER + + PI + L+ + E+ +++++ + Sbjct: 35 ERSGKSHVRPIQQADSFLDEMKNDIMAFFQINDEQSFTQEQVLDHFDTSDRRMKLIMHGL 94 Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE-------GRKDDLYLS 111 + + +G +V Y ++V+G V + F+ + R DD+++S Sbjct: 95 IGELTDEGTIVRQPDGTYRADADANVVEGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVS 154 Query: 112 SEQMKTCIHGDQVLAQPLGADRKG-------RREARIVRVLVPKTSQIVGRYFTEAGVGF 164 ++ + + GD+V R G R E ++ V+ +++VGR GF Sbjct: 155 TDDLAGAVDGDRVRVVRFQDSRNGGRNAARRRIEGKVASVVERGRTELVGRIEVWPTYGF 214 Query: 165 VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK---AVGKIVEVLGDNMGTG 221 VVPD ++ DI IP +++ GA G V+V LT+ P + G+++ VLG Sbjct: 215 VVPDSKKIYDDIFIPKEKLGGANDGEKVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNN 274 Query: 222 MAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 + L +P +P VE++ + ++ ++ A R D+RD+ TID DA+DFDD Sbjct: 275 TEMHAILAEFGLPIHFPADVEKEAEAIPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDD 334 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 A+ + G + + + IADV++YV P + L+ EA R TSVY +V+PMLPE LSNGL Sbjct: 335 ALSVQILDNGNFEIGIHIADVTHYVLPGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGL 394 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA 401 CSL P D+L ++S ++ F + S+ R Y + IL + Sbjct: 395 CSLRPNEDKLTFSAVFEMTSDAKIVNEWFGRTAIHSNRRFAYEEAQDILNSNSG------ 448 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 ++ L L+ L L R + G I+FE+ E +F + + R D +KLIEE Sbjct: 449 DYIEELRLLNELAYKLRDERFKNGAINFETVEVRFRLDENGVPLAVYPKIRQDTNKLIEE 508 Query: 462 CMILANISAARFVEKA--------KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK 513 M+LAN A FV + ++R+H+ P+ + + SF +LG +L ++ Sbjct: 509 FMLLANKRVAEFVHSLSKRNKGGEENTMVYRVHESPAEDKLRSFSDFARKLGYKLNVDDE 568 Query: 514 PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRY 573 + S+ +P+A MLQ + +R+M +A Y E+ GHFGLA + Y+HFTSPIRRY Sbjct: 569 HLSNSMNRFMASIEGKPEANMLQQLAVRTMSKARYSTEDLGHFGLAFKRYSHFTSPIRRY 628 Query: 574 PDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADW 633 PD+ HR +++ L K + +E + +H S E+ A +A R + Sbjct: 629 PDMMAHRLLQHYLDKGK------------PADRDEYEEKCRHSSEREKMASDAERASIKY 676 Query: 634 LKCDFMLDQ-VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 + +FM VF+GVIS VT FG FV + + +GLV + L +D+Y FD+ R++ Sbjct: 677 KQVEFMSRMAPDQVFEGVISGVTEFGIFVEITENSCEGLVRMQDLSDDFYEFDKDNYRII 736 Query: 693 GESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE--KAKKGDAGKK 750 G + + Y GD V VRV+ N+ R +DF+L+S + + R+ ++ G Sbjct: 737 GSRTKKMYTFGDAVVVRVKETNLARRSMDFALVSDKAGRATDAGSGRKSGRSDSSRLGGS 796 Query: 751 GGKRRQVGKKVNFEPDSAFRG 771 R+ G + + Sbjct: 797 SSTRKVGGSRGKESVAAKGEN 817 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 356/705 (50%), Gaps = 30/705 (4%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---ERLDLVKGT 88 K + L +G E ++ L + G + R + +P ++L V G Sbjct: 34 GKGFTFSSLIKHF--KGNLSKENIKEALADLVIQGAIERRDRGKFLVPFNIDKLPYVVGK 91 Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR--KGRREARIVRVLV 146 V GY ++ V + D+ + + + + GD V + KG R+V +L Sbjct: 92 VDYVNPGYAYVVVGDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGHPVGRVVEILE 151 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++ VG + V FV+P R+ +DI + P+ + A+ VVVEL +RPT Sbjct: 152 QNKNKWVGTVQQQGSVTFVLPISRRMHYDIFVRPENLKKAKHNDRVVVELVKRPTTSKNP 211 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 G+I+EV G + + + +P +P+ V + + + ++P+E A R D R++ Sbjct: 212 EGRIIEVFGPMGENDVEIHTIMAEFNLPTQFPENVLAETSAISIDIPKEEIAARKDFREV 271 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 +TID EDA+DFDDA+ + G + V IADVSYYV+ ++ +D+EA RGTSVY Sbjct: 272 FTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQEAFERGTSVYLV 331 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 + IPM+PE LSN LCSL P DR + +G L F E V+ S RL+Y + Sbjct: 332 DRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEWFGETVIHSDQRLSYEEA 391 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 + + L + + L+NL K L R + G I+F++ KF + + R Sbjct: 392 QQAIT------QPTHSLHEQITTLNNLAKKLRADRFKSGAINFDTPSVKFQLDKQGRPLS 445 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAITSFRSVL 501 I D+H+LIEE M+LAN A V + K+ ++R HD+P+ E + F + Sbjct: 446 ILPKVSEDSHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQPNLERLGDFALFV 505 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 + G + + + L E +A +P+A ++QT+ +R M +A+Y E + HFGLA + Sbjct: 506 KQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKALYTTEAKPHFGLAFE 565 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPDL +HR +K L E +++ + QH S ER Sbjct: 566 HYTHFTSPIRRYPDLLVHRLLKKYLKGE------------FYFEEAIYEKKCQHASERER 613 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 A +A R + + + M G KGVISS+ +G +V L D+ +G++ +S L +DY Sbjct: 614 VAADAERASIKYKQVELMQTLQGKRLKGVISSLMEWGIYVELLDILCEGMIRLSDLTDDY 673 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 Y D+ G +L+GE + + Y+LGD VEV ++A ++ +R +D L+ Sbjct: 674 YVLDKKGFKLVGERTKKVYQLGDLVEVEIKACDISKRTVDLWLVG 718 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 234/709 (33%), Positives = 386/709 (54%), Gaps = 21/709 (2%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---- 79 I++ L ++KP ++ +++ +E + +RR LR +++ ++V + Y L Sbjct: 8 IVDFLKNQKKPVYLKQILKAFNLDKKEDKKLVRRLLRKLQK-NKIVLYKNGGYILKREIQ 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 E+ +L+KG V H G+GFL E + DL++ +MK GD VLA+ +G++EA Sbjct: 67 EKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAEE--KIYRGKKEA 124 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +IV+VL + VG+ E FV D + I + + + VVVE+ + Sbjct: 125 KIVKVLERRVKTAVGKLKQEGNRYFVYLLDFVIPHKIYVDKKEAKKYELDNYVVVEILRY 184 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + +A G+I++ LG T +I R +++P ++ L V + Sbjct: 185 PEPKVEAKGRIIKDLGKVKNTQTVAEIVARKYDLPLTHSPEALKEAEKLPSVV--KITKN 242 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DL TID E ARD DDAV EK G +RL+V IADVS+YV+ + +D+EA R Sbjct: 243 RKDLTKQICFTIDPESARDHDDAVAIEK-EGDKYRLYVHIADVSHYVKEGSVIDKEAFQR 301 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G + Y P + + MLPE L++ LCSL P+ R CEM + KG + Y YE+V+ S A Sbjct: 302 GNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESKA 361 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 +LTY + I+ G +L + + LVK L+ + L ++L KA+E+RG I F+ E++ +F+ Sbjct: 362 KLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILFD 421 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + +R+ A+++IEE MI+AN + A+ +EK P ++R+H+KP E + +F Sbjct: 422 QYGNPYDVVPYERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKLEKVMAFVD 481 Query: 500 VLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 ++A LG ++ K + + +++E P+ +++ + LR+MKQA Y PEN GHFGL Sbjct: 482 LIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSPENIGHFGL 541 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRY D+ +HR + + +++ + + CS Sbjct: 542 ASECYTHFTSPIRRYADVWVHRLL-------KKAIKKKFTKKDMEELPKKLDIIAKQCSE 594 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER AD+A RD D LK + D+VG F+G+I+ V G F+ ++ I+GLV + SL Sbjct: 595 RERVADDAERDALDILKLRILKDKVGEKFEGIITGVMAVGLFIEIERYIIEGLVPIDSLP 654 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +++D+ +L+G+ +RLGD+V V + V+ D ++ID L+ Sbjct: 655 G-KFKYDEKNHQLIGDKMK--FRLGDKVLVEIVKVDEDTKRIDLKLVEK 700 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 233/743 (31%), Positives = 389/743 (52%), Gaps = 36/743 (4%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + IL+ + + P + +L L + ++ E + +RL +ER+G++ + + LP Sbjct: 2 EDKILKLFGQPDYTPINISQLMRRLKLAPNDKPE-VEKRLARLEREGRIARIKGNRFILP 60 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 + DL+ G + +R G GFL + K + + T + D+VL + R R Sbjct: 61 QEADLIPGRIRINRQGKGFLEADDPKLPTIVVPEHATGTAFNNDRVLVRRDVRYRGRSRI 120 Query: 138 -----EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM--GF 190 +++R+L + +Q+VG + + +V+PDD R+ DI + + +G R G Sbjct: 121 FQEEETGKVIRILERERTQLVGTFQSSNRFLYVIPDDPRIPHDIYVTEPRDVGRRPNLGD 180 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VVVEL +R G+I+EVLG G+ + LR + +P +P+ V Q+ + Sbjct: 181 KVVVELKLWESRELNPEGEIIEVLGAPDEEGVDMLSVLRQYNLPLHFPKTVLQEAHAIGN 240 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 ++ E AGR D R +VTID DA+DFDDA+ E G W+LWV IADVS+YV+ + Sbjct: 241 QIDERDIAGREDCRAHTVVTIDPVDAKDFDDAICLEAAPNGHWKLWVHIADVSHYVKVGS 300 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD EA+ RG S Y +VIPMLPE LSN LCSL P V+RL E +S++G++ +F Sbjct: 301 ALDEEAQKRGNSTYLVDRVIPMLPEALSNELCSLKPGVERLTKCVEFLLSAEGKVIRSRF 360 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 Y AV+ S R TY +V LQ R+ P+ + L + + + L +AR + G + + Sbjct: 361 YPAVIHSKRRFTYEEVLEALQ-----RKPAGPIEEMLHHANTMAQRLRRARMQAGSLDLD 415 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 E+K + + +I RI++ + + +H+LIEE M+LAN + A + ++RIH+ P Sbjct: 416 FPESKIRLDEQGKILRIDRVENDISHQLIEEYMLLANEAVAGKLMALDRQTVYRIHEPPD 475 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + + FR + L ++ GN + +LL+ + P L+ L+S+ +A Y Sbjct: 476 DKRLQEFREDV--LSHQIQCGNLTNRHEVQKLLQKLNSLPIGPALKIGFLKSLMRARYAV 533 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 E GH+GLA Y HFTSPIRRY DL +HR++ + G + E + Sbjct: 534 EPLGHYGLAKAKYTHFTSPIRRYADLVVHRSL--------------FQKGREKVAAESLR 579 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQV----GNVFKGVISSVTGFGFFVRLDDL 666 + +H S ER + +A RD D ++ Q+ + G+++ V FGFFV + L Sbjct: 580 NVAEHISDTERNSADAERDSKDVKLFAYLQSQLDSGRPQRYPGLVTDVRNFGFFVDVPGL 639 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + G+V +S+L +D+++FD +L+G S + ++LGD+VEV++ V+ ++++DF L Sbjct: 640 GMSGVVPLSTLPDDFFQFDSNRNQLIGRRSRRVFKLGDKVEVQIHKVDKFKKQVDFRLAG 699 Query: 727 SERAPRNVGKTAREKAKKGDAGK 749 ER + + + K + Sbjct: 700 PERKELPRKEVPKYERPKPQIQR 722 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 230/704 (32%), Positives = 372/704 (52%), Gaps = 16/704 (2%) Query: 23 FILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 +L + K++ P +++ELAV L+I L+ + L ++ ++ F Y++ ++ Sbjct: 6 QLLNFMKKKDYIPLTKEELAVALNISFN-SLKQFFKLLDSLVNSKKVSFNDY-KYSIYQK 63 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREAR 140 + +KG + G F E DD+++ +++ H D V + + R + E R Sbjct: 64 KETLKGKISFTTKGNAFFISEEDIDDIFIPKKELNHANHNDDVEIEIIKEKRMNSKAEGR 123 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +++VL ++ IVG + GFVVPDD + ++DI I A+ VV +L + P Sbjct: 124 VLKVLNRNSNLIVGTFTENKNFGFVVPDDIKCNYDIFIKKGDKNSAKTDDKVVCKLVEFP 183 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 ++ G ++EV+G+ + L+ EIPY + + +++ L + ++ R Sbjct: 184 DKKKNPEGVVIEVIGNKKDKNAQIISLLKDMEIPYKFSNKINKELEELTQTDIKKEIKNR 243 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 VD R+L VTIDG DA+DFDDA+ +KK + L+V IADVS+YV+ + LDREA RG Sbjct: 244 VDFRNLFTVTIDGADAKDFDDAISIDKKDND-YVLYVHIADVSHYVKKDSKLDREAYKRG 302 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 SVY V+PMLPEVLSN LCSLNP D+L + +M + G + YKFYE+V++S+ R Sbjct: 303 NSVYLIDYVVPMLPEVLSNNLCSLNPNTDKLSITVKMIIGKNGNVKEYKFYESVINSNYR 362 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 L Y V + L+G + + L ++L + L ++L R RG I F E F Sbjct: 363 LVYDDVTNFLEGKKHFYDD-ETLKENLLVMKELDEILTNKRINRGTIDFNFPEIAITFGK 421 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + ++E I + + A+++IE MI AN + + P ++RIH KP + + ++ Sbjct: 422 DGKVENIAKKENGLANRIIESFMICANEVVGKHFGELDIPIIYRIHSKPPEDKLEILKNN 481 Query: 501 LAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 L+ L +++ + + +E+++ D ++ + +LRSM +A Y P HFGLA Sbjct: 482 LSRLNIKMKPIDMISSKYLSEIIDQFKDTNKSDFINYSILRSMTKAKYSPNIDIHFGLAT 541 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 Y HFTSPIRRY DLT+HR +K L H Y + H + E Sbjct: 542 FLYCHFTSPIRRYADLTVHRTLKNYL-----HSNIEIPKNYISY----LDITSNHINDTE 592 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 A +A R + D K +FM +++G VFKG+I SVT FG FV+L++ ++GLV + +D Sbjct: 593 VLAIDAERKLEDIKKVEFMKNKIGQVFKGIIVSVTSFGLFVQLENT-VEGLVKYEDIMDD 651 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 YY FD+ +G + + +G VEV V VN +I+F L Sbjct: 652 YYEFDEQTLTAIGRRTKNVFDIGMGVEVIVAKVNEITNEINFYL 695 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 211/711 (29%), Positives = 349/711 (49%), Gaps = 26/711 (3%) Query: 21 REFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R IL+ + + +++ + +E Q + + M D L R Y Sbjct: 36 RNAILDIFQSNPQSVMNYKQVSHLMGVEATPQKLMVNSLMEDMAVDDILHEIERGRYRYN 95 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 +V GT +G EG ++++ + GD+V Q R EA Sbjct: 96 ALGLIVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQLFAKRRGRAPEA 155 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 ++ ++ K + VG+ F+V +D L+ DI IP D + A+ G V+V + + Sbjct: 156 AVIEIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDNLGNAKNGDKVIVRILEW 215 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + +G++ VLG ++ L +PY++PQ VE+ L ++ EE A Sbjct: 216 PEQSKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKITEEELAR 275 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R + TID +DA+DFDDA+ + + V IADVS+YV +D+EA NR Sbjct: 276 REDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNR 335 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TS+Y + IPMLPE L N LCSL P ++ C ++ + ++ Y+ +V+ S Sbjct: 336 ATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICHSVIKSDR 395 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R Y + +++ + + + + +L+ L + L + R + G I+FE +E +F + Sbjct: 396 RFAYEEAQAVIETGEGDCK------EAILKLNELAQRLREERFQNGAIAFERKEVRFEID 449 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFV-----EKAKEPALFRIHDKPSTEAI 494 + R + + +A+KLIEE M+LAN + AR + K + ++RIHD P + + Sbjct: 450 EKGRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKL 509 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + G +L G N + LL+++ ++P+ ++ T+ +RSM +AIY +N Sbjct: 510 ETLSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDN 569 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+GLA Y HFTSPIRRYPDL +HR + L+ GG + + Sbjct: 570 IGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLS------------GGSSVDKNDYEEK 617 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S E+ A A R + + +FM + +G VF GVIS VT +G +V L + +GL+ Sbjct: 618 CKHSSAMEQLAASAERASIKYKQVEFMSEHLGKVFDGVISGVTEWGLYVELKENMCEGLI 677 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 + LD+DYY +D L+G Y LGD + VRV N+D +++DF Sbjct: 678 PIRCLDDDYYEYDDKNFCLIGRRYRHRYSLGDAITVRVAQANLDRKQLDFE 728 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 267/787 (33%), Positives = 399/787 (50%), Gaps = 26/787 (3%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 ++ E Y +P + + +P D L L + + E L RL + R G+ Sbjct: 4 KKREESY--VLPDANDLATLFREAHRPLKIDALMRMLGLHRRMKKE-LEDRLDDLVRQGR 60 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLA 126 ++ R + L E+L LV GT+ R G GF+ E + DD+Y+ QM HGD+V+ Sbjct: 61 IIRLRGGAWGLVEQLRLVTGTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVV 120 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVG--FVVPDDSRLSFDILIPPDQIM 184 L E RIVRVL +I R G P D R++ ++ + Sbjct: 121 ALLPGRHGKNPEGRIVRVLERGRKEIPARVVRRMGRHSLLCRPADPRMAVSFVVDMSAVE 180 Query: 185 -GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 A G +VV ++ + VLG + + + H++P +P V + Sbjct: 181 EKAEKGDLVVAAPGEK-VEDGLWAATGLAVLGADDNVLVQERLVKINHDVPGDFPPEVLE 239 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + L + GR+DLR L VTIDG ARDFDDAVY E+ +G G+RLWVAIADV+ Sbjct: 240 EARDLPAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVEE-QGTGYRLWVAIADVA 298 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YVRP + +DREA+ R S YFP V PMLPE LSNGLCSLNP+V RL MV E + G Sbjct: 299 HYVRPGSAMDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFYADG 358 Query: 364 RLTGYKFYEAVMSSHARLTYTKVW-HILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 KFY A++ S ARLTY +V I++ D+ R P++ LE L ++L+ R Sbjct: 359 TPGRSKFYAAIIESKARLTYGQVNRAIIEKDEKERRLLTPVLPLLERAEALARLLNAKRS 418 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 ERG + F+ E + IFN I + R+ H++IEE MI AN + ARF+ + L Sbjct: 419 ERGSLDFDLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEKNARFL 478 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R+H +P TE + VL L K + +L++ ++ M LR+ Sbjct: 479 YRVHPEPDTEKLEGLFKVLGRTSLAQHLPGKASAKALQGVLQAAKGSDQEFLVNRMALRT 538 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M QA Y P++ GHFGLA + Y HFTSPIRRY DL +HRA++ L G Sbjct: 539 MMQARYAPDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLG---------LPVNGP 589 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 +L + + ER A EA R++ + F+ ++VG F GVIS + FGFFV Sbjct: 590 LPGERALLTIADTLNTNERVAMEAEREILKRITVLFLSERVGEEFTGVISGIIDFGFFVE 649 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 +++ +G+V +SSLD+DYY + Q L+GE +G+++RLG V VR+ VN+ +++ Sbjct: 650 FNEVMAEGMVRLSSLDDDYYGYLPERQELVGERTGRSFRLGQTVTVRLAEVNVARLEVNL 709 Query: 723 SLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKK 782 +L + +E+ ++ D G + G+ + G+ S GE+ +P+ + Sbjct: 710 ALAGPDAVAST--GVRKERRERRDYGGRSGRDARGGRGARPGERS---GERSGRPEG--R 762 Query: 783 DARKAKK 789 DAR + Sbjct: 763 DARTGIR 769 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 216/706 (30%), Positives = 381/706 (53%), Gaps = 14/706 (1%) Query: 22 EFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E I+ + KP ++ A + + Q L L + ++ ++ + Y+ P Sbjct: 11 EQIISVMENDEYKPMKFNDFAFIFDMHSKNQKNLLSNSLNYLIKEKKIKYI-NNRYS-PT 68 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REA 139 ++ +G R +GF+ VEG +D+++ + GD+V + + R RE Sbjct: 69 CSNIYEGVFEKGRGLFGFVNVEGLDEDIFVVGSESMDAFSGDKVKVEVIKEKEGDRKREG 128 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 RIV + Q VG ++ E GFVV D+ + DI IP I A+ VVVE+T Sbjct: 129 RIVEITEKVKRQTVGTFYKEKTFGFVVSDNPNFTNDIYIPKAGIKYAKNKDKVVVEITDF 188 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + VGKI +VLG G+ ++ + +++PY + ++ L+ + ++ K Sbjct: 189 PKDKKNWVGKITKVLGRKDENGVDIEALIYEYDVPYEFSHLALKEADELEFDSFDKFKGK 248 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DL D+ + TIDG A+D DDAV KK + L V IADVS YV+ ++ +D++A R Sbjct: 249 RKDLTDVNIFTIDGPTAKDLDDAVSIVKKEN-EYVLSVHIADVSNYVKRNSEIDKDAYER 307 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTS+YF +VIPMLP+ L LCSLNP+ ++ +M ++ +G+L Y FY++++ S A Sbjct: 308 GTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMRINKEGKLLDYNFYKSIIKSKA 367 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 + Y +V + G +DLRE+Y + L + LY++L + R G + F+ +E FI Sbjct: 368 KFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLRQRRYVEGNLDFDVDE-NFITV 426 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + + +R A ++IE+ M++AN SA F ++R+H++P E ++ F Sbjct: 427 ENGVVTDVSLRERGIAERIIEQFMLVANTSACEFFSSMGLNGIYRVHEEPDKEKLSGFIK 486 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 LG +L + ++ E L+++ + ++ +T+LLR MK+A+Y EN+GHF LA Sbjct: 487 FANALGYKLRLHDGHYSKELEEFLKTIEGDKNEQLFKTVLLRCMKKAVYTTENKGHFALA 546 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 +++Y HFTSPIRRYPDL +HR + +L + E+M + H S Sbjct: 547 IENYTHFTSPIRRYPDLMVHRILSNILLG-------NIDLNNLEKEREKMEKKANHLSKM 599 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ERR++E R+ C +M + + ++G +S + G +V+L++ I+G+++ ++L++ Sbjct: 600 ERRSEEMERESDKIFICQYMENFIDEEYEGRVSGFSSKGMYVKLNN-SIEGVIYFTNLND 658 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 DYY +D+ L+G G+ + +GD++ ++V +V+ +R+++F +I Sbjct: 659 DYYIYDEEHYSLVGRDFGRRFTMGDKINIKVISVSKLKREVEFCII 704 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 349/712 (49%), Gaps = 19/712 (2%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRK---DDLYLSSEQMKTCIHGDQVLAQPLGA-- 131 A + +++ G G G+GFL E K DD ++ GD+V A P Sbjct: 2 AKKKTEEIITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIP 61 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 +GRR A +VRV + G ++ PD +L I I + G R+G Sbjct: 62 WEEGRRTATVVRVTERANRFVTGTVEKLGRELWMRPDSDKLPGPIKI-SGKAKGVRIGEK 120 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 + VE+ T +T +G + E G + L +EI +P AV A E Sbjct: 121 IAVEMLGYGTAKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPRE 180 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 V ++A GR DLR+ ++TIDG ++D DDAV E+ G W L V IADVS+YV+ +P Sbjct: 181 VEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKSP 240 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EA RGTSVYF +VIPMLP LSNG+CSLNP VDRL + C MT+++ GR + Sbjct: 241 LDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHTIC 300 Query: 372 EAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V+ S R+TY +L G D DL ++Y ++ L ++ L +VL+K R+ RG + E Sbjct: 301 KSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLDLE 360 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 + E+ I + + I+ ++ ++ LIE M+ AN AR + +PA++R+H+KPS Sbjct: 361 TSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEKPS 420 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + +++LA G + ++LE +P+A ++ TM+LRS+ +A YD Sbjct: 421 QDKAEGLKTMLAPFGYTFQEADSF---ALQKILEDTKGKPEAPIISTMVLRSLMKARYDV 477 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 +N GHFGLA + Y HFTSPIRRYPDL +HR + +LA E Sbjct: 478 QNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADEANPANVGKTMPWEKRMASVAA 537 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + S E A A R++ ++ML VG G +S VT FG FV L ++G Sbjct: 538 RAADQSSQREVAAQNAEREIEKLYMAEYMLAHVGETMVGTVSGVTKFGLFVMLPS-GVEG 596 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 L+ +L D+Y D L GE +G+ + G + V A + +I F L E Sbjct: 597 LISAEALPRDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAADPGSGQITFHLSGEEPE 656 Query: 731 P--------RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKK 774 R + ++ + + + +R+ ++ +G K+ Sbjct: 657 AVPERPETLRQGHRHPGPRSARRNGEHRSNERKNGERRSRPPRHKPGKGGKR 708 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 220/724 (30%), Positives = 361/724 (49%), Gaps = 29/724 (4%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 + +++ + +GTV R G F+ +EG++ D+ + + + T + GD+VL Sbjct: 1 MTKKKKPQKHSSQKKTFRGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDV 60 Query: 129 LGADR-KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 + + +GR E I ++ K + G G F++P+ DI IP + + A+ Sbjct: 61 IKQGKNEGRMEGVITEIIKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPANSLKDAK 120 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 G VV + + K VG++VEVL + +A+ L P +P V +++ Sbjct: 121 NGDKAVVRVVAWGEKTRKPVGEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLKELNE 180 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 ++E + E R D R TID DA+DFDDA+ K RG + + V IADVS+YV+ Sbjct: 181 IQENIDAEEVKKRKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQ 240 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 P T LD+EA R TSVY P +V+PMLPE +SN LCSL P D+L ++ KG + Sbjct: 241 PDTALDKEADKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKGEIKE 300 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 V+ S R TY +V +++ + P + L+ + + L K R E G I Sbjct: 301 NWIGRTVIHSDHRFTYEQVQEVIETGE------GPYKDEVLLLNKISQTLRKVRFENGAI 354 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE------KAKEPA 481 +F S+E +F + + I + +AH+LIEE M+LAN + A +V P Sbjct: 355 NFSSQEVRFQLDENAKPIGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVPF 414 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLL 540 +R+HD P E + F + + G +L N + R + E+L+ +P+ +L+T+ + Sbjct: 415 PYRVHDTPDEEKLKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLGI 474 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R+M +A Y ++ GH+GL + Y HFTSPIRRYPD+ +HR ++ L+ + Sbjct: 475 RTMAKAAYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHDI---------- 524 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + ++M + +H S ER+A EA R + + ++M +G F GV+S V FGF+ Sbjct: 525 ---HPDKQMEKKCKHSSEMERKAMEAERAANKYKQVEYMQQYIGEEFDGVVSGVAHFGFW 581 Query: 661 VRLDDLFIDGLVHVSSLDN-DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 V D +GLV + S+ D + +D+ L+G +G+ R+GD+V ++V A N+ +R+ Sbjct: 582 VETVDTKCEGLVSIHSMSTKDEFVYDEQEYSLVGSFTGRKIRIGDKVRIQVVAANLVKRQ 641 Query: 720 IDFSLISSER-APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPK 778 +D+ L+ E AP A+K KK + + KK G+K Sbjct: 642 LDYDLVEPEGSAPDIFAGGRGRSARKPATDKKTSRAPKDKKKETSSKKKPASGKKPGSSS 701 Query: 779 AAKK 782 K Sbjct: 702 RKKS 705 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 223/680 (32%), Positives = 352/680 (51%), Gaps = 33/680 (4%) Query: 58 RLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKT 117 L M QLV + Y G + H G+GF++ + ++ ++ M Sbjct: 1 MLAEMTAQ-QLVERDGRKYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEFFIREANMGE 59 Query: 118 CIHGDQVLAQPL-GADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDI 176 +HGD V A +RE ++ V+ + +++VG + + FV PDD R+ D+ Sbjct: 60 ALHGDLVRVAVAARAPEDKKRECEVLEVVERRCTEVVGTFHHRSDFAFVEPDDQRILQDV 119 Query: 177 LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 + PD GA+ G V+V + + R+ G+I+ V+G + + V + ++ Sbjct: 120 YVAPDAFSGAKDGEKVMVSIDRFDDRKASPEGRILRVIGPSDDPNVRVLSLAMSMDVKAD 179 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 +P VE + + ++PE+ R DLRD P+ TID DA+DFDDAV+ E+ G + + Sbjct: 180 FPDEVEAEAESIPVKIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVG 239 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+YV P T +D EA RGTSVY + IPMLPE LSN +CSL P D+L Sbjct: 240 VHIADVSHYVEPDTAIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSIL 299 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 M ++++G + Y+ E V+ S RLTY + ++G + A +V+ + L K Sbjct: 300 MELTTEGDVVDYEICETVIHSKERLTYDRAQDYIEGGYPDDKMAADVVQ----ANRLAKT 355 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE- 475 + + R + G I F S+E I + + I + +R A++LIEE M+LAN + A+ + Sbjct: 356 ITRRRMQEGAIDFGSDEVNVILDDDGTPTNIVRKERLQANRLIEEFMLLANRTVAKHIAA 415 Query: 476 ------------KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAEL 522 P ++R+HD P +E I + ELP + D L Sbjct: 416 PEHVDRHRSNGTDEPLPFVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGAL 475 Query: 523 LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 ++ V +P+ +++ LR+M +A Y N GH+GL Y+HFTSPIRRYPDL +HR + Sbjct: 476 IDEVQGQPEEQVIVRAALRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLL 535 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 K GG +E++ +HCS ER A+EA R+ + +++ + Sbjct: 536 KRY------------AKGGSPADIEDLAARCEHCSEQERNAEEAERESVKLKQVEYVKNH 583 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 VG F GV+S VT FG FV + DL ++GLVHV ++ DYY +D+ L GE++G +YR Sbjct: 584 VGEEFDGVVSGVTKFGVFVEITDLLVEGLVHVREMN-DYYVYDESTYTLRGENNGTSYRP 642 Query: 703 GDRVEVRVEAVNMDERKIDF 722 GD V V V + ++++R+ID Sbjct: 643 GDSVRVEVASASVEDREIDL 662 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 232/732 (31%), Positives = 351/732 (47%), Gaps = 28/732 (3%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELA--VELHIEGEEQLEGLRRRLRAMERDGQLVF 70 +P R+ IL+ + + E+ L + + + + + ++V Sbjct: 24 PPDSPSAWRDRILQTMADSPEHILSLEILLRRLLSKKDRARRPDAQEAIDRLVLSHEVVR 83 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 ALP+RL + G + ++DGYGF+ K D+++ + + I GD V+ G Sbjct: 84 LPDSRLALPDRLPRLTGRLEANKDGYGFVIDPEGKKDVFVPAHALAGAIDGDTVVCHVSG 143 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 D +GRRE IV V+ G +V P ++++ + G G Sbjct: 144 EDARGRREGVIVGVVAHGRKTFPGLLHRTPEGWYVKPKEAKIRHLFRVEAP-PPGTEEGT 202 Query: 191 VVVVELTQRPTRRTKAV------------GKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 VV++E+T P + G+I+ VLG + + D+ + + +P Sbjct: 203 VVILEVTVYPAPLSDPAAHSSEELPNIPAGRILTVLGADGDPAIDTDLVIASFGFSTAFP 262 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + VE +EVP R D R L +VTIDG+ A+DFDDA+ E++ G L + Sbjct: 263 EEVEALAHRRAQEVPIVPDKERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIH 322 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV P + LDRE R TSVYFP +V+PM PEVLSNG+ SLNP+ DRL Sbjct: 323 IADVSAYVLPGSALDREGFARATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTAR 382 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 + +G++ + +V+ S R+TY++V L G+ Y P L + + +L Sbjct: 383 IDREGQVLSWTLDRSVIRSRMRMTYSEVHRALTGEP--SPDYLPYENRLHTMWRVASLLR 440 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K R +G + F+ E + + + I ++ R +H+LIEE M+LAN A + + Sbjct: 441 KRRMGKGSLDFDLPEPEIVLDLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLRERL 500 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 ALFR H+ P+ E I + S LA LGL PRD + +LE P + Sbjct: 501 GTALFRAHETPTPEKIENLYSFLASLGLPFTKPEVVTPRDLSRILEETKGSPLEHPVHYS 560 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 +LRS+KQA YDP GHFGLA Y HFTSPIRRYPDL +HR + T Sbjct: 561 VLRSLKQARYDPSPLGHFGLAFPDYTHFTSPIRRYPDLIVHRLL-----------DLATS 609 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 +G + + QHCS ER+A EA R D+ K F+ +G F G I+ V FG Sbjct: 610 SGMESLLPGSLSAVAQHCSERERKATEAERMAIDFKKVRFISKHLGESFDGRITGVASFG 669 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FV L F++G++ + L DYY + + ++ G +G+T+ +GD V V V V+ Sbjct: 670 LFVELSPFFVEGMIPIHMLGRDYYEYREDRHQIRGSRTGRTFSVGDAVRVTVAKVDFQRL 729 Query: 719 KIDFSLISSERA 730 + DF L Sbjct: 730 RCDFVLEEEAGQ 741 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 257/756 (33%), Positives = 389/756 (51%), Gaps = 52/756 (6%) Query: 10 EAEKYANPIPSREF-ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL 68 + K NP + + + + KP S EL + + + + ++ L+ + R+G++ Sbjct: 3 KKRKSKNPGMIKPYEAMNVFKQSRKPLSVGELEKRVGLTKRHR-KFVKNILKDLVREGKI 61 Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQ 127 + Y + E+++LV G + R G FL + +K D+Y+ ++ ++ HGD+V Sbjct: 62 IKI-GSAYGVVEKMNLVTGKLQVQRSGAAFLLPDDKKRKDIYIHTKNLRDAWHGDRVTVA 120 Query: 128 PLGADRKGRRE-ARIVRVLVPKTSQIVGRYFTEAGV--GFVVPDDSRLSFDILIPPDQIM 184 G+ G+RE R+VRVL R G P D RL F I++ PD+ + Sbjct: 121 ITGSHWGGKREEGRVVRVLERGKQVFPVRVIRPMGGTALLCHPTDPRLDFGIVVEPDEAV 180 Query: 185 GARM--------------------------GFVVVVELTQRPTRRTKA---VGKIVEVLG 215 G +++V P + G+I+++LG Sbjct: 181 VNEPVLDDNGREIYPAESVDAEVDFTRVSRGDILLVA----PGEQINPSLWEGRILKMLG 236 Query: 216 DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGED 275 D + I H IP +P V L +E EE A R D+RD+P VTIDG Sbjct: 237 DEDDAIVQEAIVKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFVTIDGAT 296 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 A+DFDDAV+ EK GG +RL VAIADVS+YV +PLDREA RG S YFP V PM PE Sbjct: 297 AKDFDDAVFVEKIAGG-YRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSVEPMFPE 355 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV-WHILQGDQ 394 LSNGLCSLNP V+RL M + G F AV+ S RLTY +V ++ G++ Sbjct: 356 ALSNGLCSLNPDVNRLAMTATIEFDKSGAPVNSSFAPAVIRSQGRLTYEQVYQGVILGEK 415 Query: 395 DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 + +E L+ L+ L + ++K R RG + F+ E + +FN + R I RN Sbjct: 416 EEQESLGDLLPMLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIRPRCRNF 475 Query: 455 AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP 514 AH+++EE MI AN + A F+ + + L+R+H P E +T+ VL ++G+ + Sbjct: 476 AHQIVEEFMIAANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISKQIPDPV 535 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 P+ E+++ ++ +LLRSMKQA Y+P+N GHFGLA + Y HFTSPIRRY Sbjct: 536 TPQTLQEVIKDSEGTDQEYIVSRLLLRSMKQAKYEPDNEGHFGLASECYCHFTSPIRRYA 595 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL +HR +K L E + G ++G S ER A EA R++ L Sbjct: 596 DLVVHRLLKVALGDEHQAIPGQKQLG----------RIGSAISGTERTAMEAEREILKRL 645 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 F+ D+VG F GVISS+ FGF+V ++ +G+V +SSL +DYY F Q ++GE Sbjct: 646 TIIFLKDKVGEEFTGVISSIAEFGFWVEFQEVMAEGMVRLSSLGDDYYTFWSDRQMIVGE 705 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +G +RLG ++ VR+E+V+++ + + SL+S Sbjct: 706 RTGHAFRLGQKITVRLESVSLELLEANLSLVSGAED 741 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 240/767 (31%), Positives = 391/767 (50%), Gaps = 21/767 (2%) Query: 23 FILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 IL +L + + L + L L ME++ + R + + Sbjct: 7 RILRYLQTEPRYKHTISHLLESFGMTSSADFIRLNHVLEKMEQEYFIFRNARNEFLTQSQ 66 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 +++G + +R G GF+ +E KD + + + T ++GD VL Q L A++ Sbjct: 67 AKVIEGRLSVNRMGVGFVDIED-KDSYRIEAPDLATAMNGDLVLIQALKIL----PFAKV 121 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS-FDILIPPDQIMGARMGFVVVVELTQRP 200 + + +VG FT+ ++ DD RL + + + G VV +T+ Sbjct: 122 IAIKERAKDTVVGTIFTKGKKVYLGLDDERLKERKVRLSYSKDFLPIDGLKVVGHITRY- 180 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 +++V+G G + L HEIP +P+ V +++ + +EV GR Sbjct: 181 --GDPLDVTVLKVIGHKDDPGTDIASILVDHEIPLEFPEEVLEELKSISQEVHPSQFIGR 238 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 DLR+ VTIDG+ ++DFDDAV EK G + LWV+IADVS YV+ +T LD+EA+ R Sbjct: 239 KDLRNQIFVTIDGDSSKDFDDAVSVEKDENG-YHLWVSIADVSSYVQENTALDQEAQQRS 297 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 S Y +V+PMLP LSNG+CSLNPQVDRL + CEM +S +G + Y Y +V+ S R Sbjct: 298 FSTYVVDRVVPMLPHELSNGICSLNPQVDRLTLTCEMQISKQGEIVSYDVYPSVICSKRR 357 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 +TY KV IL G++ + ++YA + E L + + R ++G I+FE E + Sbjct: 358 MTYNKVNQILIGNESVIQEYADMGNFFEVLLDCADAIRHQRVDKGAINFEHPETGIDLDE 417 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + I QR A ++IE+CMI+AN+S A+++++ P ++R+H++PS + + +R + Sbjct: 418 RGKPIHIYPKQRGVAEEIIEDCMIVANVSVAKYLKEYGIPGIYRVHEEPSAKRLKEYRHL 477 Query: 501 LAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 LG + +P+D + L S+ D A +L M+LR+M++A YD + GHFGLA Sbjct: 478 AEILGKPFTLKTSNVQPKDVQQFLTSIQDENSAPILNMMMLRTMQKARYDIRDIGHFGLA 537 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Q Y HFTSPIRRYPDL +HR + + E + + + +H S+ Sbjct: 538 EQDYLHFTSPIRRYPDLIVHRMLWKYMFGEN-------QKKDKDWDNRRNREFAEHASIQ 590 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER +A D K ++M D +G F G+I+ VT FGFFV+L++ ++GLV S+ Sbjct: 591 ERNCSDAEYACLDMKKAEYMQDHLGEYFDGIITGVTHFGFFVQLENT-VEGLVQTRSIPG 649 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAR 739 DYY F + L+G+ +G YR+G V+V+V A N + +DF L+ + ++ + + Sbjct: 650 DYYLFHEDRSELVGKRNGVVYRVGQSVKVKVVAANKQKGNVDFELVLPRQKGQDF-RLKK 708 Query: 740 EKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK 786 + K + S + +K+ + AKK +K Sbjct: 709 NLERHKREEKSFSYWDNPRDRKFKFHSSPPKRKKEKRESFAKKRRKK 755 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 235/713 (32%), Positives = 381/713 (53%), Gaps = 17/713 (2%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL-VFTRRQCYAL 78 ++ IL + P + EL L ++ + + +R ++ +E++ ++ V +++ L Sbjct: 4 KDIILNIVYDENYLPMTFKELDKYLKVDKYTR-KAVRDIIKDLEKENKIRVSNKKRIMPL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + + G + + GYGF + R +D+++ + M + D+V + + KGR+ Sbjct: 63 TDDEINLIGKISMAQAGYGFFISDNRDFEDVFIKRDNMNKAHNNDRVKIELIKRKEKGRK 122 Query: 138 -EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E R++ ++ +IVG + G GFV+PDD DI I A+ VVVE+ Sbjct: 123 AEGRVIEIIERAKDEIVGSFQKNKGFGFVIPDDRSYGEDIFIAEKFFNKAKNKDKVVVEI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 P + K G+I E++G + + +R H +PY + + +++ +K+ V E Sbjct: 183 INYP-KDGKPEGRIKEIIGGKNDKNIEILSLIRAHGLPYQFSKETKKESLYVKDTVNEIE 241 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 GR DLRDL VTIDG D++DFDDA+ EK G + L+V IADV++YV+ T +D +A Sbjct: 242 LEGRKDLRDLFTVTIDGRDSKDFDDAISIEKN-GENYDLYVHIADVAHYVKKGTAIDNDA 300 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG S Y + VIPMLPEVLSNG+CSLNP DRL + +MT++ KG++ +FYE+V++ Sbjct: 301 YERGNSTYLFNIVIPMLPEVLSNGICSLNPNEDRLAISLKMTINDKGKVIDNEFYESVIN 360 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S RL Y V L + + + + + L L ++L+ RE+RG I F E++ Sbjct: 361 SDHRLVYDDVNAFLDKNDENVYEDELIKEKLRIFDELREILNTMREKRGSIDFNFSESQI 420 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + R+ I +R +K+IEE M+ AN + A P ++RIH+KP E I S Sbjct: 421 DVAEDGRVLNISNFERGSGNKMIEEFMLAANETVASLFAYMDFPFIYRIHEKPKEEKIES 480 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 F+ L +G + GN P+D+ ++LE V + ++ ++LR+M++A Y HF Sbjct: 481 FKKALNTMGYNI-RGNDLHPKDFQQILEEVEGKDVESVINILMLRTMQKAKYSEHRDMHF 539 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GL+ Y HFTSPIRRYPDL +HR +K + + T+ + + H Sbjct: 540 GLSTSFYTHFTSPIRRYPDLIVHRLVKKFIHNKLTSLNQTSL-------EKTITNNADHL 592 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 SM ERR+++ RDV D LKC +M +G+ F G IS++T FG F+ LD+ ++GL Sbjct: 593 SMTERRSEDCERDVEDLLKCKYMTRFIGDEFYGNISAITEFGIFIELDNT-VEGLFMY-K 650 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 ND Y + + + Y +GDRV++RV V+ +R IDF L ++ Sbjct: 651 FSNDRYEYLEDKMKAFNTDKKIFYSIGDRVKIRVMDVDTYQRNIDFDLEVNDE 703 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 212/716 (29%), Positives = 353/716 (49%), Gaps = 30/716 (4%) Query: 22 EFILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I+++ T+ + + +A L + + + R L ++ G L Y Sbjct: 40 DSIIDYFTRHPREVVNYKAVAASLGFTTMSEKQFVVRTLESLVEQGMLTQVEIGRYRYQV 99 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADRKGRREA 139 ++++G R Y + + ++ +S + + GD+V + R Sbjct: 100 GGEMLEGVFE-SRRNYCVVVPDDESAEVIVSDRNNPEHALPGDRVRVALFPLKARRTRTG 158 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 ++V VL + S VGR G ++ +D L IL+P + + GA+ +V + Sbjct: 159 QVVEVLQRRRSTYVGRVVVTKGFSYLHTEDRALDSRILLPREALAGAKNNDKAIVRIAHW 218 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 R + G++VEVLG + L +++PY +P+ E+ + E+P E A Sbjct: 219 GAREPEPTGEVVEVLGAAGDNNTEMHAILAEYDLPYSYPEEAEEAARQIPSEIPSEEMAK 278 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R++ +TID DA+DFDDA+ K GG + V IADVSYYV P + +D+EA +R Sbjct: 279 REDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGSVIDKEAYDR 338 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TS+Y + IPMLPE L N LCSL P RL C ++ + Y+ ++ S+ Sbjct: 339 ATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQSYRIGRTIIESNR 398 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R Y + ++ + + + LH+L ++L K R +G I+F S+E +F+ + Sbjct: 399 RYAYEEAQQVIDTKEGDD------AEVILSLHSLAQLLRKRRFAQGAINFSSQEVQFVLD 452 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK-------EPALFRIHDKPSTE 492 AE R + A++LIEE M+LAN + A K + + ++RIHD P + Sbjct: 453 AEGRPVDVMARPHGTANELIEEFMLLANRTVATEFGKKQRNSNGDAKTFIYRIHDLPDGD 512 Query: 493 AITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + + + G + + ++ ++E+ D+P+A ++QTM +R+M +A Y Sbjct: 513 KLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQDKPEATLIQTMAVRTMARAEYST 572 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 EN GH+GLA + Y HFTSPIRRYPDL +HR + +A E E Sbjct: 573 ENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSVP------------QAEYE 620 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 QHCS E+ A +A RD + + ++M ++G VF GVIS+V +GF+V L +G Sbjct: 621 AYAQHCSDQEQVAAKAERDSVRYKQVEYMSTRLGKVFDGVISNVAEWGFYVELTHSHCEG 680 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 LV + L++D+Y +D+ L+G + + LGD V VR + + R+IDF L+ Sbjct: 681 LVPMRLLNDDFYDYDEKNFALVGRRYRRKFTLGDTVRVRAIHSDFERRQIDFELVD 736 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 258/737 (35%), Positives = 389/737 (52%), Gaps = 20/737 (2%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 ++ ++ GT+ H DG+GF + ++ D+Y+ M+ + D+V + R Sbjct: 2 QKKKILTGTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFR 61 Query: 139 ARIVRVLVPKTSQIVGRYFT-EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 + VL T +VGR+F G + + D+ I + M A+ +V E+T Sbjct: 62 GELDHVLSRGTKTVVGRFFKMNERTGLIRDEGKGWGQDLKIKIEDSMQAKDKELVAAEIT 121 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 P GK++E++GD M + +R + IP + +A ++ E E+ Sbjct: 122 SYPDDGKPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDEKDF 181 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLRD L+TIDG A+DFDDAVY E G + L+VAIADVS+YV+ T +D++A Sbjct: 182 KGRRDLRDKALITIDGATAKDFDDAVYVETLNEG-FLLYVAIADVSHYVKIGTAIDKDAY 240 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY P+ V+PMLPEVLSNGLCSLNP V RLC+V EM G L FYEAVM S Sbjct: 241 ERGTSVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKSDFYEAVMES 300 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 AR+TY + I+ G++ E++ + H+ L +L K+L R + G + E E + + Sbjct: 301 KARVTYGEAQEIIDGNE--VEKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPETELV 358 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + I++++R AH+LIEE M+ AN++ A+F+ + PAL+RIH+ P+ AI + Sbjct: 359 IDGAGVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIHEPPNEMAIRTL 418 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 LA G + G+ + + LE RP+A++L + LRSM QA Y+ N GHFG Sbjct: 419 EKYLANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNVGHFG 478 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L + Y HFTSPIRRYPDL +HR +K + S +++ G S Sbjct: 479 LGFEFYTHFTSPIRRYPDLIVHRLLK---------TQVMPNSRYRLMSEDDLATAGTILS 529 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 AE+R+ +A R V K FM +G F G+ISSV FG FV L + IDGLV + L Sbjct: 530 AAEQRSTKAERQVQSIKKARFMQKFIGQEFDGMISSVAKFGVFVLLREYDIDGLVRLDDL 589 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 D + FD+ RL+ + SG Y +GD + ++V A + ++ +I+F+L E+ + +T Sbjct: 590 GGDRFEFDEENLRLVAKRSGFAYSIGDSIRIQVVAADPEQGQINFALAGLEKEEHDDART 649 Query: 738 AREKAKKGDAGKKGGKRRQ-----VGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSA 792 E++ + G +R GKK + + RGEK+ KA KD K K+ Sbjct: 650 PAERSASAVLKRLHGDKRPKDHISHGKKKHQD-REFERGEKRADKKAGNKDFGKKKEFGK 708 Query: 793 KTQKIAAATKAKRAAKK 809 K + + K+ K Sbjct: 709 KNFREEGPDRFKQKPGK 725 >UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYR8_DESDA Length = 852 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 268/826 (32%), Positives = 394/826 (47%), Gaps = 51/826 (6%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 PS E +L+ L + +P D L L + E+ E L L +ER G + R + Sbjct: 21 FPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKE-LEAALDDLERQGSALRLRGGLWT 79 Query: 78 LPERLDLVKGTVIGHRDGYGFLRV-----EGRKD----------DLYLSSEQMKTCIHGD 122 PE L + G R+G GF+ + ++ D+Y+ S Q H D Sbjct: 80 RPENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQD 139 Query: 123 QVLAQPLGADRKG-RREARIVRVLVPKTSQIVG-RYFTEAGVGFVVPDDSRLSFDILIP- 179 V ++G E RIV ++ ++ F P DSRL D + Sbjct: 140 LVRVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVEL 199 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P G +V++ + P ++ G + ++ HE+P +P Sbjct: 200 PAGSEAPAQGTLVLLAPLK-PLASDLWSATLLGNYGREDDVAVQEELVKLNHEVPRDFPA 258 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG-WRLWVA 298 + L E GR D+RDL LVTIDG DARDFDDAV+ E++ GG W L VA Sbjct: 259 GALAEAEALP---GEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVA 315 Query: 299 IADVSYYVRPST-----PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 IADVS+YVRP LD EA +RG S YFP V PMLPEVLSNGLCSL P V+RL + Sbjct: 316 IADVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAV 375 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH-ILQGDQDL------REQYAPLVKH 406 + E+ ++ G+ +F E VM S ARLTY +V IL D+ E+ ++ Sbjct: 376 LAEIPFTAAGKPGKPRFSEVVMRSAARLTYDQVKACILDKDEAALAELRTEERGEEVLAM 435 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 L++ LY VL R +RG + F+ EA+ + R+ + +RNDAH+LIEE MI A Sbjct: 436 LDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRERNDAHRLIEEFMIAA 495 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV 526 N + AR + A P L+R+H P E + S LA G+E KP P +L + Sbjct: 496 NEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIE-NLPPKPSPAAMQGILAAA 554 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 P ++ + LR+M QA Y P N GHFGLA +Y HFTSPIRRY DL HRA+K L Sbjct: 555 QGTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSL 614 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 + G + E++L++G + ER A R++ L C +L +VG Sbjct: 615 GLDSGPLP----------AGEKLLRIGDQINRRERAAMACEREMDRRLGCLALLPRVGEH 664 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F G+++ VT FG FV L+ + ++G++ V L +D+Y FD L+G+ SG +R+G ++ Sbjct: 665 FSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRMGQKL 724 Query: 707 EVRVEAVNMDERKIDFSLISSER--APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFE 764 EV + V++ +I + + R + + AG+ G R+ G ++ Sbjct: 725 EVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRK--GSSSGWK 782 Query: 765 PDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKK 810 S GE + + K+ + KK A + + A K K Sbjct: 783 LVSPGDGESRGRNDKPAKNGKNGKKSGAGKSGHSGQPGGQSARKGK 828 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 232/727 (31%), Positives = 379/727 (52%), Gaps = 33/727 (4%) Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REA 139 + + GT + + G+GF++ + +DDL++ + D+VLA + + GR E Sbjct: 8 SENFINGTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVPEG 67 Query: 140 RIVRVLVPKTSQIVGRYFT---------------EAGVGFVVPDDSRLSFDILIPPDQIM 184 +I ++L ++VG + + +G + +D +L + + + Sbjct: 68 KIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKGL 127 Query: 185 GARMGFVVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + V +Q PT +G + V+G + G+ + + + +IP +P+ Sbjct: 128 QPQDRDSVTATTSQFPTSDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPEDAA 187 Query: 243 QQVAGLKE--EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 QQ + + +V GR D RD PL+TIDG D +D DDAV K G + L V IA Sbjct: 188 QQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIA 247 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS YV T LD EA RGTSVY +VIPMLP +SNG+ SLNP DRL M CEM ++ Sbjct: 248 DVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEMEIN 307 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +G++ +K +++ SHAR+TY + IL GDQ +YA L + + ++ +L+K+L Sbjct: 308 QEGQVVKHKIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKILAAM 367 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R++RG I FE++EA+ I +A+ + R ++IE M+ AN + A + P Sbjct: 368 RKKRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDHLHVP 427 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTML 539 L+R+H+ P + + +F + +G + P+D+ L++VA P+ M+QTM+ Sbjct: 428 FLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMIQTMM 487 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LR+ KQA Y P+ GHFG+A + Y HFTSPIRRYPDL +HR IK+ G Sbjct: 488 LRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSSTDAVR 547 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 G ++ Q+G S ERRA +A R D ++M D +G+++ GV++S FG Sbjct: 548 G-------KLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGDIYDGVVNSALKFGL 600 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 F+ L + I+GL H+S++ +D Y++D+ Q L+G + + + +G +V+VRV N + RK Sbjct: 601 FISLPNT-IEGLAHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKETRK 659 Query: 720 IDFSLISSERAPRNVGKTAREKAKKGD----AGKKGGKRRQVGKKVNFEPDSAFRGEKKT 775 IDF LI + AP + A E + G + Q ++ N A++ K Sbjct: 660 IDFELIDPQSAPVTKIRLAAEPERHSFHHDHNGDHHNHQHQENRQNNRHQKGAYKSTGKY 719 Query: 776 KPKAAKK 782 + + ++ Sbjct: 720 RLRGGRR 726 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 226/713 (31%), Positives = 376/713 (52%), Gaps = 18/713 (2%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E I+ L K+ KP ELA L+I + + L + L +E D + T++ + + Sbjct: 3 EQIVAILKKQTKPIDTIELAQLLNINKIDDNKMLLKALVELENDNIIGVTQQHRFYYFDP 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK---GRRE 138 ++G + ++ G+GF+++ +++ Y+ + + + DQVL + E Sbjct: 63 KIYLRGVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILKKQKNDNNSKKAE 122 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGV-GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 A++++VL +VG ++ +++L+ + A +V +T Sbjct: 123 AQVIKVLKRNNEYVVGVIKKNRHQQKYLEILNNKLTQY-RAEIINLDEAIENTIVKGIIT 181 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE-- 255 ++ KI+E++G+ G+ V L I + + + + + + Sbjct: 182 SINSKNNLMQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEALTEANQINQNIDVATM 241 Query: 256 -AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 A R DL+ VTIDG D++DFDDA+ +K + G + L VAIADV++Y ++ LD+ Sbjct: 242 LANKSRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAIADVAHYAPHNSYLDK 301 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RG SVY +V+PMLPE LSNG+CSLNP RL ++CEM + +G + YEAV Sbjct: 302 EAFERGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEIDQQGHVVNSSIYEAV 361 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S ARLTY +V + +++ A + + L LY++L +E G + F+ +E Sbjct: 362 IISKARLTYDEVNKLFCQEKNHIS--AEIAQMLFLAQQLYQILVWKKEHDGVVDFDLDEP 419 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 KF+ + +I+ I +R DA KLIE MI AN + A + P ++R+HDKP + + Sbjct: 420 KFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMDLPFVYRVHDKPKPKKL 479 Query: 495 TSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + L+ LGL + G +D ++L + D+ + +++ ++LRSM++A Y N Sbjct: 480 FDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISALVLRSMEKAKYSDIND 539 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y HFTSPIRRYPDL +HR +K L + + + +T + + Sbjct: 540 GHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLEQTRAF------VSHAS 593 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 Q S+AE RA E R+V + ++M D++G + G+I+ VT FG FV L + I+GLVH Sbjct: 594 QQSSLAELRAMECEREVDKMKEAEYMEDKIGYEYNGIIAGVTSFGIFVELPNT-IEGLVH 652 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ L NDYY FD+ +L+GE + Y LG +V +RV+ + R+IDF L+ Sbjct: 653 ITDLKNDYYVFDEKSLKLIGERKRKEYFLGKKVRIRVKKASKKLRQIDFELVD 705 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 250/799 (31%), Positives = 399/799 (49%), Gaps = 63/799 (7%) Query: 24 ILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 +LE K S D++ + + L + L +E++ Q++ Y L + Sbjct: 11 VLEIFRHNPQKQFSVDQIERQARRDRLGNFTDLVKALAYLEQEKQIITDGNGRYQLAKEN 70 Query: 83 DLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADR---KGRRE 138 V+G + G+GF+R++ + DD++++S+ K + GD+V + E Sbjct: 71 TEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAGGNPWNGKGPE 130 Query: 139 ARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 ++ +L S IVG Y G+V+P + + + + + +MG Sbjct: 131 GQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKKYRVYVSENGLIPQMGD 190 Query: 191 VVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 +V V L PT G +VE++G+ G+ + + H+I WP Sbjct: 191 MVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWP---------- 240 Query: 249 KEEVPEEA-----------------KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 E+A +AGR D+ D P VTIDG+D++DFDDAV K G Sbjct: 241 -----EDALEQANAIPDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNG 295 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 + L V IADV++YV+ TPLDREA RG S Y +VIPMLP LSNG+CSLN VDRL Sbjct: 296 NYHLGVHIADVAHYVKEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRL 355 Query: 352 CMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG---DQDLREQYAPLVKHLE 408 + C+M ++ +G Y Y A+M SH RLTY KV L+ D DL ++Y + L+ Sbjct: 356 VLSCDMEITPEGERVSYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLK 415 Query: 409 ELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANI 468 ++ L++VL K R RG I FE EAK I + + + I R A K+IE M+LAN Sbjct: 416 DMAALHEVLYKKRHARGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANE 475 Query: 469 SAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVA 527 + A + K P L+R+H+ P + I+ F + GL + N +P D +++ Sbjct: 476 TVAEAYYRKKVPFLYRVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTL 535 Query: 528 DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA 587 + ++Q M+LRS+KQA Y + GHFG+A + Y HFTSPIRRY D +HR I L Sbjct: 536 GTSEESVVQMMMLRSLKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMIHAYLE 595 Query: 588 KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF 647 + G + EE+ + SM ERR+ + R D ++M DQVGN F Sbjct: 596 EGMGDDVK-------EHFKEELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGNKF 648 Query: 648 KGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVE 707 + V+SSVT FG FV+L++ ++GL+H+S+L +DYY +D+ L G ++ + Y++G ++ Sbjct: 649 EAVVSSVTSFGMFVQLENT-VEGLIHISNLKDDYYSYDEKSMTLTGRTTHKKYKVGMPIK 707 Query: 708 VRVEAVNMDERKIDFSLISSE--RAPRNVGKTAREKAKKGDAGKKG-GKRRQVGKKVNFE 764 V + N+++ ++D + + + P N R + G+ G R + G + + + Sbjct: 708 VVLTNANVEQHQLDIEVYDPDAKKRPHNDRGMGRRSGDRNFKGRSNYGGRDKSGDRRH-K 766 Query: 765 PDSAFRGEKKTKPKAAKKD 783 P RG++ + + + Sbjct: 767 PSRNNRGQRLGQSERGNRR 785 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 246/747 (32%), Positives = 380/747 (50%), Gaps = 34/747 (4%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E +LE K +P +E+ +E E L+A+ G L + Y L Sbjct: 2 QETLLEFFKKTGRPHRLEEILHRFGLEKREAKAH----LKALVARGLLEK-KGSRYFLA- 55 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 + V+G + HRDGYGF+R+ DL++ GD V A+ + R GR Sbjct: 56 --NRVQGPLSLHRDGYGFVRLPEG--DLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGV 111 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + RVL ++VG G ++PD+ L ++ + P+ + G + G +VV++ Sbjct: 112 VERVLKRARERLVGTLDFRKGRALLLPDEPNLP-ELPLAPEGLEGLKRGSRIVVQV-HYG 169 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 R G + LG+ + + + + +P+ V ++ + E+PE R Sbjct: 170 KR---PYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRR 226 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 D R L + TIDG DA+DFDDA++ E+ GG +R+ V IADVS+YV+ + LD+EA RG Sbjct: 227 EDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEGSLLDQEAFLRG 285 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY P +V+PMLPE LSNG+CSL P DRL + + ++ ++ +F E V+ S AR Sbjct: 286 TSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVRFREGVIRSVAR 345 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 LTYT+V +G L E++A L + L L +L + + + R + G + F E K Sbjct: 346 LTYTEVEAFAEG-FGLPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEVGE 404 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 E + I Q + A LIEE M+LAN A ++ + P LFR+H++P +A R Sbjct: 405 EGELHLIPQAEP-KARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQA 463 Query: 501 LAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 LA LG LP K + L + RP+ ++ ++LRS++ A Y PEN GHFGLA+ Sbjct: 464 LARLGYTLPP--KLSGHALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAM 521 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 + Y HFTSPIRRYPDL +HR +K L + T + E + +H S E Sbjct: 522 EHYLHFTSPIRRYPDLVVHRVLKAALRR------TLTPARKARW-QEAFPAIAEHASEME 574 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R+A+ A R++ + + VG F G ++ V FG FV L + ++GLV + +L Sbjct: 575 RKAEAAERELTKYYMAKWAELHVGERFLGKVTGVANFGAFVTLPN-GVEGLVRLEALGP- 632 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE 740 Y + + L+G G+ RLGD +EVR+ N R++D L+ E AP+ K +E Sbjct: 633 -YTYSEEAMALLG-PKGRRIRLGDEMEVRIAGANPRLRQVD--LLPVEEAPKKT-KNRKE 687 Query: 741 KAKKGDAGKKGGKRRQVGKKVNFEPDS 767 KAK+ + K G + + E + Sbjct: 688 KAKEVEMRKVVGPPKDRARDTRPERAT 714 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 221/769 (28%), Positives = 370/769 (48%), Gaps = 39/769 (5%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVF-----TRRQCYALPERLD 83 +P +A +L++ EE L+ L+R ++ + + G + + +R + Sbjct: 16 RSTYQPVKPKVIAKQLNL-AEEDLKTLKRAIKRLLKKGHIAYGASHLIKRANAENAKAAQ 74 Query: 84 LVKGTVIGHRDGYGFLRVEGRKD------DLYLSSEQMKTCIHGDQVLAQPL---GADRK 134 + G G+GF+R G D+Y+ +++ +GD V + G + + Sbjct: 75 TIVGGFHRTAKGFGFVRPLGTPKSAERTADIYVPAKRTSDAANGDTVRIRMFRTRGMNGE 134 Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 + ++ ++ +T + VG Y G V D + + I + + GAR+ VV+ Sbjct: 135 SKLCGEVIEIVERETHRFVGTYNEAHGQALVQVDGNVFTQPISVGDPGVKGARLDDKVVI 194 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+ + P+ G IVEVLG G+ + +R +++P +P+A + + + E Sbjct: 195 EIVRFPSHFHDGEGVIVEVLGARGAPGVDLLSVMREYDLPEEFPEAALEVAREMADAFDE 254 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 R D ++TID DARDFDDA+ K G W L V IADV+++V + LD Sbjct: 255 SIGEDRRDETGETIITIDPFDARDFDDAISLTKLDNGHWLLGVHIADVAHFVPEGSALDT 314 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EARNR TS+Y P +VIPMLPEV+SN L SL P R ++ + G + + + Sbjct: 315 EARNRATSIYLPDKVIPMLPEVISNNLASLQPNKIRYAKTAKIEFTPDGTRVHTEVFNSA 374 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHL-EELHNLYKVLDKAREERGGISFESEE 433 + S R TY +V L +++ P V L ++H L L + R +RG I E Sbjct: 375 IRSVRRFTYEEVDEYLADRDAWKKKLTPPVHQLVGDMHELAMTLRERRFQRGSIELLMPE 434 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K + + + + ++H++IEE M+ AN + A + + L R+HD P Sbjct: 435 LKLDLDNDGAVTGAHVEKNTESHQIIEEFMLAANEAVADKLHNQELFFLRRVHDSPDPRK 494 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + + ++G+E + + L+ V P+ + LRSMK+A+Y PE Sbjct: 495 LEALTEFVRDVGIECD--SLQSRFEIIRALDKVKGLPEQAAVNYATLRSMKKAVYSPEEI 552 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GH+ LA + Y HFTSPIRRYPDLT+HR L ++ Q + M+ G Sbjct: 553 GHYALASECYCHFTSPIRRYPDLTIHRMYNDLATGKKPVQ-----------DYDAMVAEG 601 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +HCS E+RA A RD+ + + +++G + VI+ V FG FV+ +L DGL+H Sbjct: 602 EHCSQREQRAASAERDLVKIKLLNHLSEKIGMEMEAVITGVESFGLFVQGLELPADGLIH 661 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE-RAPR 732 + +L +DYY +D+ L+G G +RLGD ++V + V++++R++DF LI E RA Sbjct: 662 IDALQDDYYHYDRTTHSLVGNRDGNAFRLGDVLKVSIARVDLEKRELDFRLIEQEARAAG 721 Query: 733 NVGKTAREKAKKGD---------AGKKGGKRRQVGKKVNFEPDSAFRGE 772 + +R + G +GK K++ GK + + R Sbjct: 722 HAADNSRRRPTSGRTASDDFSYQSGKPAPKKKNFGKPERKQGKAKKRKR 770 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 233/708 (32%), Positives = 359/708 (50%), Gaps = 12/708 (1%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 +E + K EK S ++L +L+IE ++ L + + +ER + + + + Sbjct: 5 IEKIFKEEKVLSIEDLKEKLNIESAKEFVELVKNVGKLERKSVVTQLPSEKFLYVKEALE 64 Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EARIVR 143 ++G + H+ G+ F+ ++Y+ ++ + GD VL + + R E + + Sbjct: 65 IEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDSVYKDDRNLEGIVQK 124 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 VL T VG FV DD + I I + G V+VE+T Sbjct: 125 VLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFNLVDGSKVLVEITDYSKVS 184 Query: 204 TK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 + G I++ +G G+ + + H IP +PQ V +Q + +E+ E K D Sbjct: 185 FEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTEKISDEIKLEDKY--RD 242 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 + +VTIDG+DA+D DDA+ K + G +RL V IADVS YV +PLD+EA NRG S Sbjct: 243 CTNEMVVTIDGDDAKDLDDAISVIKTKKG-YRLKVFIADVSRYVTEDSPLDKEAANRGCS 301 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +V+PMLP LSN +CSLNPQV R + C++ ++KG Y Y AV+ S RLT Sbjct: 302 VYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKGFPESYDIYPAVIKSKGRLT 361 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y KV + +++ E+Y V L+ L + RE RG I F+ E+K + + Sbjct: 362 YKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAIDFDKPESKVVVDENG 421 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 + I +R + KLIE+ M+ AN + P ++RIH++P E + F + A Sbjct: 422 EVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIHEEPKMEKLRQFFDIAA 481 Query: 503 ELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 LG G + EP A +L ML T+LLR+M QA Y N GHF LA + Sbjct: 482 SLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQARYSINNIGHFALATK 541 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPDL +HR I+ L + + L + S E+ Sbjct: 542 YYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNF------ISRLPDLAESSSEYEK 595 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 RA + R+V KC++ML F+G++SSVT FG F+ L+ I+GLVH+ ++++DY Sbjct: 596 RAVDCEREVDRMKKCEYMLKYQEQTFRGIVSSVTNFGVFITLERSNIEGLVHIKAMNDDY 655 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 Y +DQ L+G + YRLGD V V+V V+++ ++IDF ++ + Sbjct: 656 YTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFKILKHKS 703 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 221/762 (29%), Positives = 361/762 (47%), Gaps = 35/762 (4%) Query: 22 EFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E ++ + ++ S ++ L + + + D L Y L Sbjct: 18 EKLMSFFQTQPDETFSFKQIFHALKLTTHPAKMLAIDVMEELAWDDFLSKVGESAYTLNT 77 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 + + +GT I +G E +++S ++GDQV Q + + +EA Sbjct: 78 KGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQVRVQFMARRQNHIKEAM 137 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 ++ +L K VGR E + F+V ++ DILIP ++ G + +V++T+ P Sbjct: 138 VIAILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILIPKKKLKGGKTDDRALVKITKWP 197 Query: 201 TRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K VG++V+VLG+ + ++ L + +PY +P+ VE + E+ + A Sbjct: 198 DADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVEDAAKKISAEITAQDYAE 257 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D RD+ TID DA+DFDDA+ K G W + V IADVS+YV+ +DREA+ R Sbjct: 258 REDFRDVWTCTIDPRDAKDFDDALSIRKLESGQWEVGVHIADVSHYVKEGDIIDREAQQR 317 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY + IPMLPE L N +CSL P ++L C + + + Y+ V+ S+ Sbjct: 318 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDDEANVKSYRIVHTVIKSNR 377 Query: 380 RLTYTKVWHILQGDQDLREQYAPL------------VKHLEELHNLYKVLDKAREERGGI 427 R Y + IL+ + + P + + L L K++ R + G + Sbjct: 378 RYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITLDRLAKLIRGRRMKAGSV 437 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-----EKAKEPAL 482 F+SEE F + + + R + DA+KLIEE M+LAN + A V K + Sbjct: 438 KFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTVAESVGIVKKGKKAKTLP 497 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKP--EPRDYAELLESVADRPDAEMLQTMLL 540 +R+HD P + + R A+ G +L + R +L++ V + + +++QT+ L Sbjct: 498 YRVHDNPDPQKFENLREFTAKFGYKLKSASTKGATARALNKLMDEVQGKREEKVIQTIAL 557 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM +A Y N GHFGLA Y HFTSPIRRYPD +HR I + G Sbjct: 558 RSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLI------------TRYQNG 605 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 G + E +L +HCS E A A RD + +FM + +G + IS + FG + Sbjct: 606 GRSANKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMSEHIGECYDAHISGIQSFGIY 665 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 +D+ +G++ + LD+DYY FD+ L+G Y+LGD + ++V +++ R++ Sbjct: 666 AEIDENHCEGMIPMRDLDDDYYDFDEKNYCLVGRRRHHVYQLGDPIRIQVAKADLERRQL 725 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVN 762 DF+L + P +TA E A +K KR ++ Sbjct: 726 DFAL--DDGRPLKAKQTAAEYAVNRKNDRKNSKRGSKSRRRK 765 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 225/750 (30%), Positives = 362/750 (48%), Gaps = 57/750 (7%) Query: 23 FILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 I+ LT + ELA ++ QL G L ++ DG + +CY Sbjct: 57 EIISFLTDHEGERFRSVELAKKMGYGESRQLPGFWYVLHKLQEDGVVDKDSNRCYGWAGL 116 Query: 82 LD-------------------------LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMK 116 +G + H +GYGF+ VEG DD+++ ++ + Sbjct: 117 EPDTYEEHLVEGRHFPQPGKERYKVDQTYQGKLTTHPNGYGFVDVEGFDDDIFIGADMLG 176 Query: 117 TCIHGDQVLAQPLGADRK--------GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPD 168 +HGD+V R E IV V+ K + IVG E + PD Sbjct: 177 QSLHGDEVEVLVTKVPETYVSKQSPHQRCEGLIVNVVSRKLTTIVGTLQRENRRFLLKPD 236 Query: 169 DSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 ++ +I I A+ G V+ + + +++E+LG + + V Sbjct: 237 QRKILPEIHISVKDAKKAKDGAKVLAGDLEF-LKNGTIQARVIEILGQAGESQVEVSAIA 295 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 R I + Q + ++EE+ +E R+D+RD + TID DA+DFDDA+ EK Sbjct: 296 RGLGIDETFEQELLTFAEKVREEITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKL 355 Query: 289 RGGG-WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 GG +++ V IADVS+YV ++ LD+EAR R TSVY +VIPMLP LS +CSLNP Sbjct: 356 GNGGGYKVGVHIADVSHYVPENSALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPG 415 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHL 407 VDR+ ++ KG + ++F++ V+ S R TY V I+ + V+ L Sbjct: 416 VDRMAFSVFFNITKKGEVKKFEFHKTVIHSKRRFTYEDVQQIIDAGKG------DYVEEL 469 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + L +L K + R E GG+ FE+EE +F + + + +R D+H+LIEE M+LAN Sbjct: 470 QALESLSKTIRAQRMESGGLEFETEEVRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLAN 529 Query: 468 ISAARFV-------EKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL------PGGNKP 514 + A ++ EK P ++R+H P E + + + ++G +L Sbjct: 530 RTVAAYLTARYAENEKNPHPVIYRVHGAPQMERVQVLANFVRKIGFDLKLDRKGKDSATV 589 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 R ELL+ V ++ ++LRSM +A+Y N GHFGL + Y HFTSPIRRYP Sbjct: 590 SSRALRELLQKVHGTNVEFLVNELVLRSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYP 649 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL +HR + + + T E + + ++ Q + E+ A EA R+ Sbjct: 650 DLVIHRILFEYETTRKKRRKVTPERITEISAT--ITEVCQITNEREKIATEAERESVKLK 707 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 + ++M +GN + GVI+ T +G +VR+ D I+GLVH+ +L +DYY +D+ L+G Sbjct: 708 QVEYMSSHLGNTYGGVITGATEYGIYVRMTDFAIEGLVHMRNLKDDYYEYDEATYSLVGR 767 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + ++G R++V+V V++ R ID +L Sbjct: 768 RKHRRLQIGQRLKVKVHEVDLTRRTIDLTL 797 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 244/732 (33%), Positives = 379/732 (51%), Gaps = 50/732 (6%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + L +P + EL+ L +Q LR LR +E G++ R+ Y LP Sbjct: 14 KERIRQLLRNPNYRPLDKVELSKALRWPS-DQRAELREALRELETAGEIARIRKDRYVLP 72 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 + DLV G + H +G+ L E D+++S+ + T +H D+V+A+ + R+ RR Sbjct: 73 QTADLVTGILQVHANGHAHLLSETPGVKDVFISAPNLGTAMHSDKVVARLMHEGREQRRG 132 Query: 138 ---EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 EAR++++L IVG + +V+PDD RL +I + P+ GA++G VVV Sbjct: 133 GAQEARVIKILERANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPE-PKGAQVGDKVVV 191 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 + +R G+++EVLG G+ + +R +++P +P AVE++ + E V Sbjct: 192 RFEEWESRHVNPEGEVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVEREAEKIFETVHP 251 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 + A R D R +VTID +DA+DFDDA++ E+ G WRL V IADVS+YVRP PLDR Sbjct: 252 DEIARREDCRGQFIVTIDPDDAKDFDDAIHVERLARG-WRLGVHIADVSHYVRPGHPLDR 310 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EAR RG S Y +VIPMLPE LSNG+CSL P V+RL + G++ +F +V Sbjct: 311 EARKRGNSTYLADRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDESGKIRKARFARSV 370 Query: 375 MSSHARLTYTKVWHILQGDQ---------------DLREQYAPLVKHLEE----LHNLYK 415 + S ARLTY + IL+ D + + L E L Sbjct: 371 IKSAARLTYRQALAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPELRERVKLAWELAS 430 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 +L K R G + + E K + + R R+E+ + +H+L+EE M+ AN A+ ++ Sbjct: 431 LLRKNRFAAGSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEFMLAANEVVAKALK 490 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 K P ++RIH+ P + + +R + G G+ + R+ LL + +P+ L Sbjct: 491 DRKIPTVYRIHEDPDPDRLADYRELAISYGFR--AGDLTQRRELQRLLAATRGKPEEYAL 548 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 + LL+S+K+A Y + GH+GLA +Y HFTSPIRRY DL +HRA+ Sbjct: 549 KLGLLKSLKRARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHRAL------------- 595 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV----GNVFKGVI 651 G + + ++ H S ER + +A RD K +F Q+ + ++ Sbjct: 596 ---AGEKLGGVGAVGEIAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAIV 652 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 V +G V L D I GL+HVSSL +D+Y+FD R +G +TY++GD ++V V Sbjct: 653 VDVRSYGLVVELPDCLITGLIHVSSLPDDFYQFDSTRLRFVGRRKNKTYQIGDVLQVIVS 712 Query: 712 AVNMDERKIDFS 723 V+ +R+IDF Sbjct: 713 RVDAYKRQIDFV 724 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 230/662 (34%), Positives = 355/662 (53%), Gaps = 13/662 (1%) Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL-GADRKGRREARIV 142 +++G + +GFL + +D+Y++ ++ D V + G + E ++ Sbjct: 14 VLQGVYKSYGPRFGFLITDEEHEDVYIADRDHLNAVNNDIVEVRIKKGETGRHNTEGEVL 73 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 R++ + V Y + G +P D ++ I IP + + A G V+VE+T+ P Sbjct: 74 RIIERAENTFVCTYEMTSFGGKAIPIDEKIDMVIEIPRGEELEAVTGARVIVEVTRWPGA 133 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 R A GK+ E++G G+ +DI + H +P+++ +A+ + L +E+ +E G D Sbjct: 134 RANAEGKVTELIGYKGDKGIDIDIIIAQHRLPHVFSKALMAEADALSKEMKQE--KGVED 191 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 R LP+VTIDG DA+D DDAVYC KK G ++L V IADVS YVR + +D EA RGTS Sbjct: 192 FRSLPIVTIDGPDAKDLDDAVYCVKKENGHYQLGVHIADVSRYVRKGSLIDDEAYRRGTS 251 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +VIPMLP LSN LCSLN DR M C M V+ G++ K +++ R Sbjct: 252 VYLADRVIPMLPFQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVAAEKITPSMVRVARRCN 311 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y ++ + + P + L L +L K RE RG + F+ E K I + E Sbjct: 312 YPEINQAFETGV-ASDDLKPYLPMLRNLKACADILRKNRENRGALEFDFPEYKVILDEEG 370 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 RIE+ R DA K+IE+ MI AN + ARF+E +++RIHD P + S + ++A Sbjct: 371 TPLRIEKRNRGDAEKMIEDAMIAANETVARFLEATGHTSVYRIHDHPDGNKLLSLKKMMA 430 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 G+ +PEP+D L+ES+ + ++Q M LRS+ QA Y EN+GHFG+A Sbjct: 431 IFGMAEKLPKEPEPKDMQRLMESMKGKESEAVVQVMTLRSLPQACYSTENKGHFGIASTC 490 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPDL +HR I+ L +T E +L+ +HCS E+ Sbjct: 491 YTHFTSPIRRYPDLMVHRLIRQALRNRLNKSQLKKQT-------EFLLRAVEHCSETEQN 543 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A E RD D ++M+ VG F I+ +T FG FV LD+ ++GLVH+ S+D+D Y Sbjct: 544 AVETERDTTDLKMTEYMIPFVGEPFDAHITGLTRFGIFVGLDN-GVEGLVHIDSMDDDEY 602 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 + + + G G+ Y +G V V + + ++R++DF ++ R+P N+ K R+ + Sbjct: 603 VYQEDTMTVKGLRGGKKYTMGMPVRVTLVKADKEKRELDF-IMGEIRSPLNLEKRVRKGS 661 Query: 743 KK 744 + Sbjct: 662 RP 663 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 637 bits (1642), Expect = 0.0, Method: Composition-based stats. Identities = 226/698 (32%), Positives = 377/698 (54%), Gaps = 24/698 (3%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 L+ L + +KP + +L + ++ + L+R+LR + R + R + Sbjct: 5 LKILNRSKKPLTFKQLLSQSGLDA----KTLKRQLRDLVRQNKAEKYRNGTFVSKNTPTE 60 Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 + G + H +GYGFL +G D+++ +M +HGD+V +G++E R+V + Sbjct: 61 ITGKLDLHPNGYGFLSHDGEGRDIFIPKNKMNGAMHGDKVT--ISPETFRGKQEGRVVEI 118 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + +IVGR AG+ VVP +++ I + +++ + VV+VELT P+ + Sbjct: 119 VERSEQKIVGRIENLAGIMRVVPMTRKVNTYIYLTSNKVQ-YKDDTVVLVELTHFPSEGS 177 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 A G++ +VLG + +I L ++I ++P+++E+ V E+ + A R DLR Sbjct: 178 AARGQVNKVLGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPGA-RTDLR 236 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 LP VTIDGE A+DFDDA+ EK + L+V IADV ++V+P TP+D EA RGTS Y Sbjct: 237 SLPTVTIDGETAKDFDDAISIEKTEN-EFILYVHIADVCHFVQPGTPVDNEAYRRGTSFY 295 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +PMLPE LSNGLCSL P DRL + ++T + G+ FY ++++S RLTY Sbjct: 296 FPEFAVPMLPESLSNGLCSLRPNEDRLALTAKITYTKDGQRKKAYFYRSIINSDRRLTYN 355 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 V +L+ ++ +E+ ++ L++ L + R + G + F+ E F + + Sbjct: 356 SVNDVLE--KNTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFELDENGEV 413 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 I +R+ +H++IE MI AN + F+EK + +++RIHDKP + F + A Sbjct: 414 TAIIPAERHLSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDFAGLAATF 473 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 G+++ + P+D ++ E+V + A++L L+R+M +A Y+ N GHFGLA SY Sbjct: 474 GVDVTVKD-VTPKDVKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFGLASDSYT 532 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRYPDL +HR I L + H S + + + E+RA+ Sbjct: 533 HFTSPIRRYPDLMVHRLICNTLFGTEYH------------SEAGLDDACKLSTENEQRAE 580 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 A RD++ + K ++ V F V+ SV FG + ++ + + G V + S+ D Y+F Sbjct: 581 NAERDISKFKKLKYLAKHVDEPFGAVVMSVGAFGLNIYIESVMLKGTVSLESIPGDVYQF 640 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + Q + G +G+ +R D +EV VE ++MD ++ F Sbjct: 641 MKKEQIVRGRVTGKMFRAADLIEVMVERIDMDMQEAYF 678 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 216/734 (29%), Positives = 370/734 (50%), Gaps = 25/734 (3%) Query: 6 FQEREAEKYANPIPSREFILEHLTK--REKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 ++E +K E L++L + E + E+ L +++ + ++ L A E Sbjct: 34 NAKKENQKTQKMELKEEQELKYLRQVLAEYEFTFQEILQLLEWSQKKR-KMYKQLLNAWE 92 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 G + R Y LPE+ VKG + +GFL + G +++ + T ++GD Sbjct: 93 ESGDIYLKRNGRYTLPEKEGFVKGEISISSGNFGFLDINGEA-SVFIPGAYLNTAMNGDT 151 Query: 124 VLAQPLGADRKG--RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 VL + L G +RE + +V+ + IVG + GFV P +S DI IP Sbjct: 152 VLVRILKQSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNS--PKDIYIPKK 209 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 I GA+ G +V V++ K G IV +LG T + L I +P V Sbjct: 210 LIRGAKTGDLVAVKVDFWGDEERKPEGAIVSILGSPKDTEALISSLLLNEGIEEKFPNEV 269 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q++ + E++ +E R DLR L ++TIDG DA+D DDAVY EK G ++L+V+IAD Sbjct: 270 LQELDKIDEDISDE-LKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIAD 327 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSYYVR +T LD +A RG S+Y +VIPMLP LSN LCSLNP D+L EM + Sbjct: 328 VSYYVRENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDK 387 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE------QYAPLVKHLEELHNLYK 415 +G++ FY++V+ S R+TY V IL+ +++ E +Y + + L+ + L K Sbjct: 388 RGKVVKNDFYKSVIKSKYRMTYENVNTILEKNEESEEYKVLYDKYRKIDEMLKNMLELSK 447 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 ++ ++ RG I FE E K + + + ++ I R +A ++IE+ M++AN + A + Sbjct: 448 IIRNNKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLF 507 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 + PA++R+H+ P + + L + G L G + P + ++E P+ ++ Sbjct: 508 WEEIPAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLI 567 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 ++LR+M++A Y +N GHFGLA + Y HFTSPIRRY DL +HR + + K + Sbjct: 568 HKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMNEKEK 627 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + + S ER AD+ D ++M D++G V+ +S + Sbjct: 628 AKYGANF-------EAIASSISRTERVADKLEEDSVKIKLIEYMQDKIGQVYIARLSGMN 680 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 F+ L++ +V+ + D + +D+ +++ + + ++Y +G ++V + + + Sbjct: 681 KNKIFMELEN--HIEVVYNVTTARDNFIYDEENFKIVDKRNNESYTMGSTMKVSIVSASY 738 Query: 716 DERKIDFSLISSER 729 + +I+ E+ Sbjct: 739 AKMEIEVIPYVEEK 752 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 242/841 (28%), Positives = 392/841 (46%), Gaps = 63/841 (7%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE I+ + + + P + +A EL + +E+ L +R + G ++ + + +P Sbjct: 4 RERIIALMQQADYAPLDKSGIASELGLGKKERR-NLDYEMRLLLSKGDIIRIKGDSFCIP 62 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDD-----LYLSSEQMKTCIHGDQVLAQPLGAD-- 132 + +DLV GT+ + G L + + + + +++E +H D+V+ + A Sbjct: 63 KDVDLVTGTIKFRQKGSAILIPDAKAGEPKPKAIEIAAEDTSVAMHDDKVVVRLADAPPN 122 Query: 133 ----RKGRRE----------ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 ++GR++ R++R+ +VG +V PDD R+ DI + Sbjct: 123 EPVWKRGRKQASAYQPTGPFGRVIRIQKRARETMVGTLCKTRFFHYVAPDDPRIIHDIYV 182 Query: 179 PPDQIMGA----RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 PP + +G VVV+L + R G+++ LG + L + + Sbjct: 183 PPPEESRLDPLPTVGSKVVVKLHEWEQRHVNPEGELIANLGKTHEPQAELMGVLHKYNLD 242 Query: 235 YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 +P V ++ + +V E+ GR DLR TID +DA+DFDDA+ E R Sbjct: 243 PEFPPEVMKEAESVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAISLEYPDDKHVR 302 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 + + IADV+ YVR T LD EA NRG S Y VIPMLP LSNG+CSL DRL Sbjct: 303 VGIHIADVAAYVRGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVEDEDRLTKS 362 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-----QGDQDLR------------ 397 +T + KG + + V+ S+ RLTY + + +L Q +DL+ Sbjct: 363 VFVTFNKKGDIVEVDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPPAHQTGSTGR 422 Query: 398 -------EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 + L K + EL ++ L AR + G ++ + EE K + + +R+E+ Sbjct: 423 ALNTLSDAELGKLQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEKGYADRLEKI 482 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +++H+LIEE M+LAN A+ +++ + P ++R+H+ P E + R +A G+E Sbjct: 483 VNDESHQLIEEYMLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYMATWGIE--T 540 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 + +D +LLE+++ P + +L+T +LRS+K+A Y GH+GL Y HFTSPI Sbjct: 541 SDLNNRKDLNKLLETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKNDYLHFTSPI 600 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRY DL HR + L K +G T Y+ + + H S E + EA R+ Sbjct: 601 RRYSDLVTHRVFNHFLVKVRGEPALNEST--LRYNASKASSVADHLSQTEVNSVEAERES 658 Query: 631 ADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 +F ++ F +I+ V G F+ L + G+VH+S+L +D YR + Sbjct: 659 IKVKLLEFFERELDKKKKTAFDAIITEVRNHGMFIELKESNAFGMVHISALRDDLYRLNA 718 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGD 746 G L+G Y LG ++V V V+ +R++DF L ++ P N T Sbjct: 719 SGTALIGRRKKNAYSLGQMIQVEVHKVDRFKRQVDFRLCD-KQDPNNPKPTIMPTEAAEV 777 Query: 747 AGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRA 806 + K Q GK R + K KP K ARKAK PS T TK R+ Sbjct: 778 SPAKPSPSSQNGKTPKRGSKRPARKQGKAKPAGGK--ARKAK-PSRATSDKGKPTKPARS 834 Query: 807 A 807 A Sbjct: 835 A 835 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 212/702 (30%), Positives = 355/702 (50%), Gaps = 15/702 (2%) Query: 22 EFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E + + + K DE+ L + + E R + DG+L+ R Y LPE Sbjct: 8 EKLKDIFKNTKGKGLKLDEITKMLGWSPKFKKEN-REIIEKWVSDGELIKNNRGKYNLPE 66 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EA 139 +KG RD + F+ E +++ + GD V + + R+ E Sbjct: 67 TQGYIKGVFSIIRDRFAFVDTEDEG--IFIPKSGFNGALDGDTVFVRLTAGMKGDRKKEG 124 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +VRV+ ++G + GFV P S DI IP ++ A +VVV +T Sbjct: 125 EVVRVISRDKDIVIGIFQKNKNFGFVTPTHS-FGRDIYIPSIRMKNAENNQLVVVRITFW 183 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K G+IVE+LG+ T ++ + + +P + + E+ ++ G Sbjct: 184 GDNERKPEGEIVEILGNPYDTKNMIEALIIREGMSETFPPEAMAEARRIPMEIGKKELEG 243 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR LP++TIDG+DA+D DDAVY EK + G ++L V+IADVS+Y+ + LDREA R Sbjct: 244 RKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSIADVSHYIPEGSVLDREAYKR 303 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G SVY +V+PM P+ +SNG+CSLNP D+L CEM + KG++ Y++V+ + Sbjct: 304 GNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEIDKKGKVVDSDTYKSVIKTAY 363 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TY V ++ GD++ + YAP+ + ++ L K++ + + +RG I F+ E K + + Sbjct: 364 RMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIREVKYKRGSIDFDIPEIKLVLD 423 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + ++E I+ R ++ ++IE+ MI AN + A + + P+++R H+KP E I + Sbjct: 424 EKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLEIPSVYRTHEKPDMERIKNLNE 483 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 LA+ + + P+ + +++E +R ++ M+L ++KQA Y EN GHFGLA Sbjct: 484 TLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKMILMALKQAKYTVENYGHFGLA 543 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Y HFTSPIRRY DLT+HR + +L + +MEE+ H S Sbjct: 544 SGYYTHFTSPIRRYADLTVHRILNSVLHGYPNKKTIIK-------NMEELPVTCAHISKT 596 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER A + + ++M+D+VG + I + F +D ++ V S + Sbjct: 597 ERAAMKVEDESVKIKLVEYMMDKVGEEYDATIVGFSNKRVFFETED-HVECFWDVVSAKH 655 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 YY FD + +G+ Y +GD+ +V + ++ E +I+ Sbjct: 656 -YYEFDDREYVMRDTDTGKFYSIGDKYKVTLVRASLSELEIE 696 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 242/787 (30%), Positives = 386/787 (49%), Gaps = 49/787 (6%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 IL L + P S +E+ L I +++ + L L +++ GQ+V T+ + +A+ + Sbjct: 48 ILSLLYNSDHPLSSNEIITRLKITKQKK-QALELVLNVLQKQGQIVCTKGEKWAIASPMQ 106 Query: 84 LVKGTVIGHRDGYGFLRVEGRKD-----DLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 V GT + R G F+ V+ + D+++ E GD+V E Sbjct: 107 KVIGTFVVQRSGAAFVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQVIVYPTKHGKNFE 166 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVV--PDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 ++V++L +++ R + G VV P DS+L+ ++ ++ + ++V + Sbjct: 167 GQVVQILERPRKEVIVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLPEKPIENELLVII 226 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ---VAGLK---- 249 T +G LG + + + IP +P V ++ L Sbjct: 227 PTPNTNGELLMGIAQYSLGVEEDVRVQEKVVKLNYNIPCEFPLHVLKEENVAKDLFIKSK 286 Query: 250 -----------EEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 +++ + + A R DLR + VTIDGEDA+DFDDA+ C GW LWVA Sbjct: 287 AVFYNVPYQKYDDISQCSTAIRQDLRVIDFVTIDGEDAKDFDDAI-CVYPTDIGWDLWVA 345 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS++VR + LD EA RG S YFP V MLPE LSN CSL P+ +RL M +++ Sbjct: 346 IADVSHFVRAGSLLDSEALARGNSYYFPCSVESMLPEFLSNDFCSLKPKEERLVMATKIS 405 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA-PLVKHLEELHNLYKVL 417 + G+ F+ V+SS ARLTY +V L+ + R + L L KVL Sbjct: 406 FDNDGKTKNVIFFPGVISSRARLTYEQVHLALEVKEISRLPGGIDTLSMLNNASELAKVL 465 Query: 418 DKAREERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 R +RG + F+ E +F+ N A RR+ + + +R +H+LIEE M+ N + A F+ Sbjct: 466 QANRIKRGSLEFDLPETRFLINKATRRVIGVIRQERFFSHQLIEELMLAVNEAVATFLHD 525 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 + P L+RIH +P E + +LA L P+ + +LE + P ++ Sbjct: 526 KQIPFLYRIHPEPDIERLEKLFRILATTDLACQLSGSPDAKKLGGILEEAENTPQTFLIS 585 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M+LRSM QA Y PE HFGLA Y HFTSPIRRY DL +HRA+K+ L Q H Sbjct: 586 RMVLRSMMQAKYSPEPGEHFGLASPLYCHFTSPIRRYADLLVHRAVKFALGDTQKHIPFG 645 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + + + + C+ ER A EA R++ L C + G +F+ +++ +T Sbjct: 646 QQ----------LFSIAEQCNSHERVAQEAEREITKRLSCLVLQGDEGKIFEAIVTGITD 695 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 F FFV L + I+G+V ++SL +D++ ++Q Q L+G +G+ + LG R+ V+V +VN+ Sbjct: 696 FAFFVELISMPIEGMVRLASLKDDWFEYNQDRQELLGVRTGKRFYLGQRLTVKVSSVNIL 755 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK 776 +I+F L + T+ E KKG + R+ K+ +S+FR KK Sbjct: 756 RLEIEFEL-------HMMQPTSGENIKKGRTKARNYYRQ---KEKVRSSNSSFRKRKKKS 805 Query: 777 PKAAKKD 783 +K Sbjct: 806 SSLHQKG 812 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 215/710 (30%), Positives = 396/710 (55%), Gaps = 18/710 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL-VFTRRQCYAL 78 ++ IL + KP + E+ L + + + + + + +D ++ + ++++ + L Sbjct: 4 KDLILNIVNDENYKPMTIKEMLKYLDCDKYIKKDVKKII-KKLAKDNEIKISSKKKIHPL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR- 136 + G + + GYGF + + D+++S+ + T + D+V + + G+ Sbjct: 63 STEDKSLIGQINLAQGGYGFFISDNKDFKDVFISANNLNTANNLDRVRIKIIKNKEFGKN 122 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E ++V ++ +++IVG Y G GFV+ D + ++ DI + A+ V+VE+ Sbjct: 123 AEGKVVEIIERNSNKIVGLYQKNKGFGFVISDSNNITSDIYVDEKNSKKAKSNDKVLVEI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 P ++ GK++EVLG+ + + +++H + + + V+++ ++++V Sbjct: 183 INYP-KKGSPEGKVIEVLGNKDEANVDLISIVKSHGLKENFSKKVKKEAVFIEKDVDLSK 241 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R DLRDL VTIDG D++DFDDA+ EK + L+V IADVS+YV+ + +D+EA Sbjct: 242 VKNREDLRDLFTVTIDGRDSKDFDDAISIEK-DNEDYILYVHIADVSHYVKEKSEIDKEA 300 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG S Y + V+PMLPE LSNG+CSLNP +RL + +M ++ KG++ YK Y+A++ Sbjct: 301 YQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKMKINDKGKVIDYKIYKALIR 360 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S+ RL Y V L ++ + + L++ L+ ++LYK+L K RE+RG I F E++ Sbjct: 361 SNYRLVYDDVNDYLDYNKKVYDD-EVLLEKLDLFNDLYKILKKKREKRGSIDFNFTESQI 419 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + I +R A+K+IEE M+++N + A P+++RIH+KP E + S Sbjct: 420 DVSNQGDVLNISLFERGSANKMIEEFMLVSNETIASLFAFMDFPSIYRIHEKPKEEKVES 479 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 F+++L LG + G + P+D+ ++L+ + + D ++ ++LR+M++A Y HF Sbjct: 480 FKNILNTLGYNIK-GKELHPKDFQDILKQIKGKDDESLINMLMLRTMRKAKYTNYRDMHF 538 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFT+PIRRYPDL +HR +K + N E+ +++ + +H Sbjct: 539 GLATKYYTHFTAPIRRYPDLIVHRLVKDFI-------DNKLESINQTSLEKKLSKFAEHL 591 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S+ ER +++ RDV D KC +M +G F+G+ISS+T FG FV L++ ++G Sbjct: 592 SITERNSEDCERDVEDLYKCKYMKKFIGERFEGIISSITDFGIFVELENT-VEGCFMYKF 650 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 D+ ++ + + + + Y++G +V + V+ V++D+R IDF L+ Sbjct: 651 SDS-HFEYIEDKLSCINIDKNKRYKIGQKVMIEVKNVDLDKRNIDFDLME 699 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 627 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 231/722 (31%), Positives = 365/722 (50%), Gaps = 22/722 (3%) Query: 12 EKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFT 71 E Y N I + L K+ P S E +G E +LR +G ++ Sbjct: 19 ESYKNKIVT---FLTAYDKKSMPLSMLESKCRTKKQGRENFTEAFSQLRT---EGVIMMK 72 Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 + AL R +V T+ +GF + + ++ + M + D+VL + A Sbjct: 73 KGMKVALCSRAGVVPATITRLSRTFGFAETDEGIE-YFIPGKCMLGAMPNDRVLLADI-A 130 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 R G E +V +L ++Q+ GR G ++VP D+ ++I + + G Sbjct: 131 SRTGEPEGEVVDILEFGSNQLTGRIEFVDGEPYLVP-DTAAKNHMIISVRESIPFENGDK 189 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V+ E+ R R + KI+ V G + L H P +P V+++ + E Sbjct: 190 VLAEIVYRGRRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKISEG 249 Query: 252 -VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 V + + R DLRD+P+ TID +++D DDAV E+ + G +RL V IADVS+YV+ ++ Sbjct: 250 GVQDYSFNNREDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVKGNS 308 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA RGTS+Y+ +VIPMLP+ LSNG+CSLNP +RL + + + S+G + Y+F Sbjct: 309 ELDKEAMRRGTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNMLSYRF 368 Query: 371 YEAVMSSHARLTYTKVWHILQGDQ--DLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 ++V+ S + Y+++ IL G++ ++RE+YA + L + L L +E R Sbjct: 369 CKSVIRSRVKGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERRHAPE 428 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 E+ E+K I + + +R + ++IEE M+ AN +AA+ + + P ++RIH+ Sbjct: 429 IETTESKLIIDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYRIHEA 488 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P + + +L + GLE P + +P AE+L S E + M+LRSM +A Y Sbjct: 489 PPEAKVENLHELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEAVNLMVLRSMAKAKY 548 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 E GHFGL L+ YAHFTSPIRRYPDL +HR I +LA + +G Sbjct: 549 STEPVGHFGLVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSKRYSG-------F 601 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 + + S AE RA R+ D K ++M +G F+ ISSVT FGF+ L + + Sbjct: 602 AVNAAERSSAAEIRAVTIERECEDCYKAEYMKAHIGETFRARISSVTEFGFYAELPNT-V 660 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +GL+H+ +L Y + + L + +G TY LG V+V AVN+ E IDF L E Sbjct: 661 EGLIHIRTLPEGEYDYSEP-VSLTEKFTGTTYSLGMEVDVICSAVNVSEGTIDFVLDDDE 719 Query: 729 RA 730 Sbjct: 720 ED 721 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 220/706 (31%), Positives = 346/706 (49%), Gaps = 29/706 (4%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEG------RKDDLYLSSEQMKTCIHGDQVLAQPLGADR 133 + V G G+GF+R R D+++ + +GD V + + R Sbjct: 195 GKDKTVTGKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDIVRVRLVSGGR 254 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 R+ IV +L T Q VG Y + G G V D + I + GA G VV Sbjct: 255 SLRKSGEIVEILERDTHQFVGVYQEQRGSGVVEVDGRVFAVPISVGDPGAKGAAPGDKVV 314 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +E+ + P+ + I EVLG G+ +R +E+P +P+AV E+ Sbjct: 315 IEMVRFPSHTHEGEAVITEVLGARGTPGIDTLSIMREYELPEAFPEAVLAASREEAEKF- 373 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E+ R D ++TID DARDFDDA+ K G ++L V IADVS++V+P + LD Sbjct: 374 DESIGDRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIADVSHFVKPKSVLD 433 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 REAR+R TSVY P +V+PMLPE++SN L SL P R + S +G +FY + Sbjct: 434 REARDRATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSPEGTPLHSEFYLS 493 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAP-LVKHLEELHNLYKVLDKAREERGGISFESE 432 + S R TY +V L Q +++ P + + L +H L +L + R ERG I Sbjct: 494 AIKSCRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRRRRLERGAIELSLP 553 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E K + + + ++ ++H++IEE M+ AN + AR + + + P L RIH+ P Sbjct: 554 ETKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKELPFLRRIHENPDLR 613 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + ELG+E + + +++ VA P+ + +LR+M++AIY P Sbjct: 614 KLQVLTKFVRELGIECD--SLESRFEIKRVIKEVAGAPEEHAVNYAVLRAMQKAIYSPAV 671 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+ L + Y HFTSPIRRYPDLT+HR ++ L+ ++ ++ L Sbjct: 672 EGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQVL-----------L 720 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +HCS E+RA A RD+ ++ +VG+ VI+ V FG FV DL +GL+ Sbjct: 721 AEHCSEREQRAQAAERDLIKVKLLGYLSKRVGSEMDAVITGVEEFGIFVMGIDLPAEGLI 780 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA-- 730 H+ SL++DYY+FD L G +G +RLGD + V V V++D R++DF + ++ Sbjct: 781 HIQSLEDDYYKFDSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFRFVGRLKSDR 840 Query: 731 ------PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFR 770 PR+ + ++ + RR G + F R Sbjct: 841 THLSRLPRSGVRMRQDVPDEMQNDADFPPRRDEGSRPEFPDRGPPR 886 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 238/718 (33%), Positives = 356/718 (49%), Gaps = 27/718 (3%) Query: 11 AEKYANPIPSRE-FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 + K + S+E IL + + P ++ + + E L+ L + + + Sbjct: 17 SPKKTQKLNSQEGEILYQIYASQAPLRAKQIFAKC---KKYSYEQLQNSLHTLVQKKIIH 73 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLR-----VEGRK--DDLYLSSEQMKTCIHGD 122 + Y + + + + G+GFL +E + D Y+S M +HGD Sbjct: 74 LVGGKTYVVSNKELFCTAILDANPRGFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGD 133 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +VLA + GR EA I V+ ++I G + G VVP+D RL F + + + Sbjct: 134 KVLAYIFRTTQNGRSEAEIFHVIKRGLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPE 193 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 M R G V+V L Q T G ++E G + + +P + Sbjct: 194 DMSVRHGDGVIVTLKQTATPDKVRQGMLLESFGSPDSVKSQIRFVVEKSVLPDKFSGETY 253 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ + E+ RVDLRD+ VTIDG+ A+DFDDAV EK RG +RL+VAIADV Sbjct: 254 AELEQMG---GEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEK-RGVNFRLYVAIADV 309 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S++V+ + LDR+A RGTSVYFP VIPMLPE LSN LCSL P DRL + + + Sbjct: 310 SHFVKVGSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRA 369 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G+L F +++ S R TYT+V IL + + L+E L ++L + R Sbjct: 370 GKLQKKSFCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRA 429 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG + F E+ + ++E +E + +++ + + K+IEE M+ AN + A F + AL Sbjct: 430 IRGALGFTMPESIILLDSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSAL 489 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIH+KP + + F + LG++LP + P + ++E ++ +LLRS Sbjct: 490 YRIHEKPDVDRVKEFATYAHNLGMQLPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLRS 548 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 MKQA Y +N GHFGLA Y HFTSPIRRYPDL +HR + L+ N + Sbjct: 549 MKQAKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHRELCRLVGYLPAETKNRSA---- 604 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 Q G S ER A +A R++ D LKC FM +G FK +IS VT GFFV Sbjct: 605 -------QQAGDFLSGRERVATKAERELGDRLKCIFMERYIGETFKAIISGVTDTGFFVE 657 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 L D I + L D Y FD G L+G++ G + LGD VEV V+ ++ ++ Sbjct: 658 LKDFPISASAPIEELVEDMYLFDYRGHNLIGQNKGAFFSLGDSVEVTVQRIDRARNRV 715 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 269/806 (33%), Positives = 388/806 (48%), Gaps = 53/806 (6%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ-------------- 74 KP S EL I E+ ++R LR + R+G L+ ++ Sbjct: 19 RAAGKPLSIRELMQRARIHPGER-TDVKRALRDLTREGVLLRDGKRFSLPGARPAAAPAA 77 Query: 75 ---------CYALPERLDLVKGTVIGHRDGYGFL-RVEGRKDDLYLSSEQMKTCIHGDQV 124 R + V GT+ HRDGYGF+ R++ + DD+++ + + GD V Sbjct: 78 ALAPVGERRGMRRAGRGNEVVGTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLV 137 Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 + + A R GR R+V V+ + ++G Y FVVP D L + +P + Sbjct: 138 RVEIVPA-RGGRTAGRLVEVIERRRRLLIGTYHARGARSFVVPADEELGEAVPVP--ETA 194 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A+ G VV V L + G +VE +G + V ++P+ V + Sbjct: 195 AAQDGDVVKVAL---EPGTARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAE 251 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG--GGWRLWVAIADV 302 + V E + GR DL LPLVTIDGEDARDFDDAV+ E+ G G +RL VAIADV Sbjct: 252 AEATPDRVRPEDRQGRRDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADV 311 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 ++YVRP LD EA RGTSVYFP QV+PMLPE LSNG+CSLNP VDRLCMV ++ V Sbjct: 312 AHYVRPGAALDAEAGRRGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEH 371 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + YE VM S AR TYT+V +++ G + + L + L R Sbjct: 372 GETRSAEVYEGVMRSAARCTYTEVANVVAGQS--VPGRDRFRERFLLMAELQEKLTAMRG 429 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG + F+ EAK + + IE+ RN AH+++EE M+ AN + AR+ + P + Sbjct: 430 RRGALDFDLPEAKIVLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTI 489 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIHD P E + +F + G E+P P PR LL L +LLR+ Sbjct: 490 YRIHDVPDEEKLQAFLDLAESHGFEVP--EVPGPRALNALLGRFQGHAQQRALNQLLLRA 547 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M QA+Y EN GH+GLA Q Y HFTSPIRRYPDL +HR +K A+ QG Sbjct: 548 MMQAVYATENIGHYGLAAQHYLHFTSPIRRYPDLVVHRLLKEEWARRQGQPVREP----- 602 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 S + ++ S ER A EA RD+A + FM D+VG ++GVIS+V FG FV Sbjct: 603 --SPAALAEMAAVSSERERAAMEAERDIAAFYAALFMKDKVGERYEGVISAVVEFGLFVE 660 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L F++GLV + L D L+ ++G+ +R+GD V V V + + R+I+ Sbjct: 661 LKRWFVEGLVRLEDLGG-APELDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIEL 719 Query: 723 SLISSERA-PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 L+ +A + K R + + + G + + + RG+ Sbjct: 720 KLVEEAKAIGKPAAKGRRRREAEPVLAEAGPE-----EADARGARAPRRGKPAPASAPPA 774 Query: 782 KDARKAKKPSAKTQKIAAATKAKRAA 807 R ++ ++ + Sbjct: 775 AGRR--QRSGEGHREHGVKQGPRART 798 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 255/786 (32%), Positives = 389/786 (49%), Gaps = 44/786 (5%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 + A K +P +E +L + + S+ ++A + G Q L+ LR ++ +G Sbjct: 45 DAPAFKATGVLPGKEEVLAFIASQGGKVSKRDIARAFGL-GSGQKIELKALLRDLKDEGA 103 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDD---------LYLS-SEQMKT 117 + RR+ + +P L V + RDG G L + D + L ++++ Sbjct: 104 VEGGRRRMH-VPGSLPSVVLVDVTGRDGDGELLAVPTEWDSEEHGDAPVILLHVPDKLRG 162 Query: 118 CIHG--DQVLAQPLGADR--KGRREARIVRVLVPKTSQIVGRYFT----EAGVGFVVPDD 169 G D+++ + D R+++VL Q +G + +G G ++P D Sbjct: 163 PAPGLSDRIVVRVEPNDPAPGIGYTGRVIKVLEKARKQQLGVFRKAPPGSSGGGRIIPID 222 Query: 170 SR-LSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 + L ++ +PP GA G +V VE+ + ++ E LG +A+ Sbjct: 223 KKNLGRELQVPPGAENGAEDGDLVSVEMM-HQRVFGQPTARVKERLGSLATEKAISLVAI 281 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 H IP +P V + + GR D R LPLVTID DA+D DDAV+ Sbjct: 282 HAHGIPNAFPAKVIAEAEAAR----PATAKGREDWRKLPLVTIDPPDAKDHDDAVHAVPD 337 Query: 289 RG----GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344 GG+ + VAIADV+ YVRP + LDREA RG SVYFP +V+PMLPE +SN LCSL Sbjct: 338 DDPDNAGGFIVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVVPMLPERISNDLCSL 397 Query: 345 NPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLV 404 PQ DR + M + GR + F+ +M S A+L Y + + G D + APL+ Sbjct: 398 RPQEDRAALAVRMVIGKDGRKRSHSFHRILMRSAAKLAYEQAQAAIDGVSD--DTTAPLL 455 Query: 405 KH-LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 + L L+ Y + +AR+ R + + E K + + ++R+ R DAH+LIEE M Sbjct: 456 ESVLRPLYAAYACVKQARDARQPLELDLPERKILLKEDGTVDRVIVPPRLDAHRLIEEFM 515 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 ILAN++AA +E+ K P +FR+HD P+ +++ R LA L + LP ++ P + +L Sbjct: 516 ILANVAAAETLEQKKVPLIFRVHDGPTLAKLSALREFLATLDISLPKTDQVRPSHFNRIL 575 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 V A ++ ++LRS QA Y EN GHFGL L+ YAHFTSPIRRY DL +HR + Sbjct: 576 GMVDGGDSAPLVNQVILRSQSQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHRGLL 635 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 L + T ++E + ++ S ERRA A R+ D L + +Q+ Sbjct: 636 RTLGADADALPETA-------TVETLAEISADISATERRAMAAERETVDRLIAHHLAEQI 688 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G VF+G I+ T G FV LD+ DG V +SL DYYRFD+ Q L+G+ +G+ +R+G Sbjct: 689 GAVFQGRITGATRAGLFVALDETGADGFVPAASLGQDYYRFDETRQALVGDRTGEMHRIG 748 Query: 704 DRVEVRVEAVNMDERKIDFSLISS----ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 DRVEV++ + F L+S R G+ A A K + G +R G+ Sbjct: 749 DRVEVKLVEAAPVAGALRFELLSEGSYLGRGKSAKGRGAERPASKAAKARAGFAKRTAGR 808 Query: 760 KVNFEP 765 Sbjct: 809 APRKGR 814 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 237/797 (29%), Positives = 379/797 (47%), Gaps = 35/797 (4%) Query: 34 PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHR 93 P +LA E+ + + RR L + +L T +P + + GT+ Sbjct: 19 PLKWQQLAKEVGAQKHD-WTKFRRSLEELIEGKRLHRTSGGLIKVPVAREHIIGTIKRAA 77 Query: 94 DGYGFLRVEGRKDDLYLSS-----EQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLVP 147 G+ + E + ++ E + + GD+V A L G+ R++ +L Sbjct: 78 RGHAWFTPESLANQPHIEPYTVAAEDAGSALTGDKVSAIILKKRGPNGKIAVRVIDILER 137 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 T+Q VG Y G G+V D+SR I + G R G VV+E+ P T Sbjct: 138 ATTQFVGEYHESRGKGYVTVDNSRFERPIDVGDPGAKGVRPGDQVVIEMVHFPEFSTPGE 197 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLP 267 +++VLG G+ + + +P +P++V ++ + E+ R+DLRD Sbjct: 198 AVLLKVLGKRGEPGVDLQSIIYEFGLPDEFPESVLEESRLQAQLFSEDDIGDRLDLRDEL 257 Query: 268 LVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPS 327 ++TID ARDFDDA+ ++ G W L V IADV+++VRP T LD+EA RG SVY P Sbjct: 258 IITIDPLTARDFDDAISLKRHEDGSWTLGVHIADVAHFVRPGTELDKEAIRRGNSVYLPG 317 Query: 328 QVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW 387 +V+PMLPEVLSN L SL R + S G + F A + R Y +V Sbjct: 318 KVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDGMVKHTSFANAAIKVRRRFAYEQVM 377 Query: 388 HILQGDQDLREQYAP--------LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 +L Q E AP + + LE ++ L +L K R RG + E + N Sbjct: 378 PLLLNRQSPGEHPAPEGETVPEEICQLLERMYELAMILRKRRFSRGALELSLGEVELDCN 437 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + + + + +H++IEE M+ AN++ A ++ L R+HD P + +F Sbjct: 438 DDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRGWFFLRRVHDSPDELRMQNFAK 497 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 +A LG +LP + + LL VA +P+A L LLRS+KQA Y PE GH+ LA Sbjct: 498 FVATLGYDLPR--AQDRQAIQALLNEVAGQPEAFPLNYALLRSLKQAEYSPEKIGHYALA 555 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ--------------GHQGNTTETGGYHYS 605 + +YAHFTSPIRRYPDLT+HR +++++A + + + S Sbjct: 556 VDNYAHFTSPIRRYPDLTIHRLLEHVIADASFTHSVPAAESLNTASDRKKSKSSRADLLS 615 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 ++ QLG+ CS+ ERRA++A R++ ++ D+VG I+ V FG F + + Sbjct: 616 EADLRQLGKQCSLTERRAEKAERELIKIRLIRYLADKVGLELNATITGVERFGLFCQGIE 675 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 L +GLVH+S L DYY DQ+ ++G SG+ +RLGD V V+V +V+ +R+++F ++ Sbjct: 676 LPAEGLVHLSDLPGDYYDVDQIAHAVIGRRSGRVFRLGDPVRVQVSSVDPAKRELNFRIV 735 Query: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 + + + GD + + F G+ + A+ K Sbjct: 736 GRSGQDDTLSEGEFSRETPGD-DRSRSASDKSSSSPRRRSQPRFPGD---RSNASAKGGF 791 Query: 786 KAKKPSAKTQKIAAATK 802 + KK S+ +K + Sbjct: 792 RQKKQSSSPKKTRKKPR 808 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 186/661 (28%), Positives = 330/661 (49%), Gaps = 25/661 (3%) Query: 74 QCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR 133 + +A L G + GY F+ ++G D+++ ++ I GD V + Sbjct: 8 KKFAGLSNNSLAIGFINITSYGYAFVNIKGFPKDIFIPKKKTNRAIEGDLVQVRFKNRKS 67 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 + E ++++L K +G ++ G V+ ++ + DILIP ++ G + V+ Sbjct: 68 GKKIEGEVIKILKRKRKNFIGILKMKSQYGLVIVHNNTIHVDILIPINEFKGYQHNEKVL 127 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 VE+ + P +GKI++ G + + L + I Y +P+ VE++ + + Sbjct: 128 VEIVKWPKNSKNPLGKIIKGFGVSGEYKTEIFSLLSEYGISYEFPKEVEKEAKEIVLK-K 186 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 R D+R++ TID DA+D DDA+ K W + + IADVS+YV+ + LD Sbjct: 187 NSDLNMRRDMRNINTFTIDPLDAKDIDDALSIRKLNSNTWEIGIHIADVSHYVKEGSFLD 246 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA R S+YF +VIPMLP++LSN LCSL+P+ D+L ++++G++ F + Sbjct: 247 KEAYTRANSIYFVGKVIPMLPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKILKSWFGKT 306 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 ++ S+ R TY +V I++ + + + L K+L K R + G IS E E Sbjct: 307 IIRSNRRFTYEEVQKIIERKK------GDYHEDISTLLFFSKILTKNRLKNGAISIEKVE 360 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA------KEPALFRIHD 487 KF + + R+ + N+AH+LIEE M+LAN + F ++R+HD Sbjct: 361 IKFHLDKKNNPTRLYLEKSNEAHRLIEEFMLLANRKISEFFSLNLDGKPSNRTYIYRVHD 420 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 +P + I + ++ LG L N LL+S+ + + M++ ++LR+M +A Sbjct: 421 EPDFQKIFVLKKIIEPLGYFLDLKNIKTS--INHLLKSIQGKSEQNMIENLILRTMSKAK 478 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y +N GH+GL+ Y HFTSPIRRY D+ HR + Y L K+ S+E Sbjct: 479 YSTKNIGHYGLSFIYYTHFTSPIRRYSDIIAHRLLNYYLTKKNNKLK----------SIE 528 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + +HCS ER A +A R+ +L+ ++ +G F+G+I+ T + ++ L Sbjct: 529 FYEEQSKHCSEKERLAIDAEREFLKYLQVKYIKKYLGKEFEGIITGFTEWSVYIDLLVFQ 588 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +G++ + + D+Y ++G + Y LGDR++V++ N+++++I I Sbjct: 589 TEGMIRLRDIQEDFYTLHSNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQITLGWIKK 648 Query: 728 E 728 E Sbjct: 649 E 649 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 231/709 (32%), Positives = 356/709 (50%), Gaps = 23/709 (3%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 S++ +L L + P + + ++ L M G++V + Y L Sbjct: 13 SKKNLLAALHQSGAPLRSKNIFDLFD-ADASLKKVIKSTLAQMVESGEIVQ-MGKSYGLI 70 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 + L + GT+ R G G+L + RK DL++ GD+V+A + +K E Sbjct: 71 DNLPRMTGTLDVRRSGVGYLIADDRKQKDLFIHPNNFGGAWPGDKVVAVVDSSRKKDSPE 130 Query: 139 ARIVRVLVPKTSQIVGRY--FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 R+V VL T +++ R F P DSR+ F ++ + G ++ V Sbjct: 131 GRVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSRMPFYTVVDTSDVPNPEKGDILSVAP 190 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + + + LG+ + + IP ++P +Q L + + Sbjct: 191 VEEQEKGI-WRCTALRRLGEERDLATQELLVKTGYSIPEVFPVPALRQAEALPDTPSPQD 249 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLR L LVTIDGE A+DFDDAVY E++ G +RL VAIADV++YV +PLD EA Sbjct: 250 WAERNDLRKLALVTIDGETAKDFDDAVYVERQENG-YRLVVAIADVAHYVPEGSPLDVEA 308 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG S YFP V PM PE LSNGLCSL P+V RL MV + S G + Y AV+ Sbjct: 309 LARGNSYYFPLSVEPMFPEALSNGLCSLRPKVARLAMVVDTPYSMDGEPGAPRLYNAVIM 368 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S ARLTY +V L G D + A L+ L + L K+ K R +RG + F+ EA+ Sbjct: 369 SQARLTYNQVQAALDGTPD--QDTAELLPMLRDAEELAKIFMKRRMDRGCLDFDIPEAQV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + I + R +H+LIEE MI AN A ++ + +RIH +P + + + Sbjct: 427 RVIED--IISVHAGTRLFSHRLIEEFMIAANERVAEYMGARQRVFPYRIHPQPDEKKLET 484 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 +L+ L + + + ++ ++LR+M QA Y PEN GH+ Sbjct: 485 LLRMLSHTSLVDRLPKEMNQMGLQHISHAAKGTDIEYLVNRLILRTMMQAQYSPENDGHY 544 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA +Y HFTSPIRRY DL +HR++K L+A E SM ++ + + Sbjct: 545 GLASVAYCHFTSPIRRYADLLVHRSLKRLIAGEPE-----------KMSMGDVQGICEGL 593 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + ER+A EA R++ + D++G +GV+S V FGF+V L D+ +DGLV +++ Sbjct: 594 NALERKAMEAEREIQKRSAILALEDRIGEEMRGVVSGVADFGFWVELLDMPVDGLVRLAT 653 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 LD D+Y FD Q L+G+ +G+T+ +G + V +EAV+++ +I+F+L Sbjct: 654 LD-DFYVFDPERQDLLGQRTGKTFAMGQTLNVVLEAVSLERVEINFTLP 701 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 224/720 (31%), Positives = 365/720 (50%), Gaps = 18/720 (2%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I+ L + + ++A + + + L+ L+ ++M R + + Y + + Sbjct: 6 LIIATLFENGGGMTLKQIANKNELPKK-YLDKLKNTAKSMIRQRTIFKAKSDLYYISDIR 64 Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 + G V +GF+ +D ++S ++K + GD V+A+ + A + R A + Sbjct: 65 TVFTGKVATLSRTFGFVTNLATGEDCFVSGGKLKGAVPGDTVIAREIAAKTEQRSATAEV 124 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 + VL G E + V PD L L + G V+ + +R Sbjct: 125 LAVLDVSEELFGGVIVKEGKMLKVQPDS--LGCPPLTILKVKEQIKEGDKVLFSIRKRGE 182 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG-LKEEVPEEAKAGR 260 ++ + IV VLG + A + L + IP + + Q + + E+ A R Sbjct: 183 HHSEHIVDIVRVLGSSEYAKSATEAYLIQNNIPVDFSEEALNQAKQYVNAVIDEKQTAKR 242 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +DLRDLP+ TIDG D +D DDA+ E+ GG ++L V IADVS+YV +PLD +A RG Sbjct: 243 LDLRDLPIFTIDGADTKDIDDAISIERTEGG-YKLGVHIADVSHYVTEGSPLDNDAFERG 301 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY +VIPMLP+ LSNG+CSLNP VDRL C M +S KG + YKF + V+ S + Sbjct: 302 TSVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEISDKGTVKKYKFAKTVIRSRVQ 361 Query: 381 LTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 Y++V IL G + ++ +Y ++ + ++ L ++L K R++RG +S E+K I Sbjct: 362 GVYSEVNSILDGTANAQIKRKYKDVIDCIPVMNELAQILIKKRKDRGAPDIKSSESKVIC 421 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + I+ + + +IEE M++AN SAA+ K + P ++R+H+ P E I S + Sbjct: 422 DENGICIDIKPRIQGVSEGIIEEFMLMANNSAAKVGMKKEIPFVYRVHENPPAEKIESLK 481 Query: 499 SVLAELGLE-LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + L LG+ L K E +++A+LLE AD P ++ ++LR+M +A Y + GHFG Sbjct: 482 TTLEALGVNPLGINEKAEAKNFAKLLEETADDPKNIIINRIVLRTMAKAKYSEQPIGHFG 541 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L ++ YAHFTSPIRRY DL++HR + ++++ + E ++ + Sbjct: 542 LVMKEYAHFTSPIRRYADLSIHRILTDYVSRKGADKLKKKYG-------EFSVKAAAQAT 594 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 E A A R D+ ++M +G F G+IS V G G FV L + ++G + V SL Sbjct: 595 KTELSAVAAERSCEDFYAAEYMKKHIGEEFDGIISGVIGSGLFVELPNT-VEGKIDVRSL 653 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 +Y+ G L +G Y +GD+V V+ N++ +IDF LI + N K Sbjct: 654 SENYFEVRN-GIALYDGVAGTMYTIGDKVRVKCINANVNLGQIDFELIKVYKDASNGDKA 712 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 608 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 227/650 (34%), Positives = 336/650 (51%), Gaps = 23/650 (3%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 G V H DG+GF+ VEGR+ +L E+M +HGD V +P+ ++GR A +VR+ Sbjct: 74 YTGKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVRPVR--KRGRESAEVVRI 131 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + ++ +VG+Y + + V P + ILI A G V +E+ + Sbjct: 132 VEHASTVLVGQYLVQGKIAVVQPRSRNMPQAILIAHGDAGTASDGDWVRIEIKR---DAG 188 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 GK+ EVLGDN+ +D+ + ++ +P AV + ++V E GR DLR Sbjct: 189 HVRGKVQEVLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFADQVLESDIKGRKDLR 248 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 +P VTIDGEDARDFDDAV + G + WV+IADVS+YVRP + LD+EA R S Y Sbjct: 249 HIPFVTIDGEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHSALDKEALARSNSFY 307 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +VIPMLPE LSNGLCSLNP + RL M M + G YE+V+ S ARLTYT Sbjct: 308 FPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGTRRSIHVYESVIHSQARLTYT 367 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 + L+ + + L + L++ L++ L+K R++RG + + E + + + + Sbjct: 368 QASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLDMPEVRALLQDD-VV 426 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 I ++RN A +LIEE M+ AN + A +++ + L+RIH P +AI + LA Sbjct: 427 VDIVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAPERQAIETLNEFLAPF 486 Query: 505 GLELP------GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 GL + ++ P D +LE +P A +L ++LRSM+QA Y P N GHFGL Sbjct: 487 GLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSMQQAKYTPVNVGHFGL 546 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A SYAHFTSPIRRY DL +HR +K L+ E ++ T + +G S Sbjct: 547 AYDSYAHFTSPIRRYADLIVHRRLKALIRGEDPNRVQPVGT---------LADIGLQTST 597 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER+ D L F VG IS +T F ++ + + V L Sbjct: 598 QERKQQRGEWDTQAMLAALFHSKDVGKTMPARISGLTKRRIFFEIEPTMAEAGLAVDDLP 657 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 + D+ G RL G Y LGDR++V +++ + +I+ L + Sbjct: 658 G-AFELDETGHRLAARRGGSAYHLGDRLDVVIDSTDPVRGQINVRLAGEQ 706 >UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQK5_9SYNE Length = 779 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 212/755 (28%), Positives = 365/755 (48%), Gaps = 57/755 (7%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 +L +L+ +K + L +L+ EE + L L A+ER L +R Y E D Sbjct: 8 LLANLSD-DKLVAVKTLEKKLNCNTEEAVRDLHIALTALERTNVLEKSR-GKYRKIENED 65 Query: 84 LVKGTVIGHRDGYGF-LRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG-ADRKGRREARI 141 +++G + G+ F ++ E DD+Y+ Q+ T +GD+VL Q R+ E + Sbjct: 66 VIEGKLRCSSKGFCFAIQDEEGADDIYVRESQLNTAWNGDRVLVQVTKDGSRRRSPEGEV 125 Query: 142 VRVLVPKTSQIVGRY---FTEAGVGFVVPDDSRLSFDILI-PPDQIMGARMGFVVVVELT 197 +L ++ + T A +P D RL F++ I ++ + + ++ VE+T Sbjct: 126 KLILERANESVLAKVKAAETAADKFKAIPLDDRLLFELDIAESEEDLSEAIDHLIHVEIT 185 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + P + GK+ +LG + VDI H++P I+ + V GL V + Sbjct: 186 RYPIAQHPPQGKVSRILGSDAEDAADVDIVYCKHDLPRIFSEEVFIAARGLPNRVRKSDI 245 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GRVDL + +TIDG +A+ DDA+ + G RL + ++DV++YV+P+ +DR AR Sbjct: 246 KGRVDLTEHAALTIDGSNAKVIDDAISLDITDDGYRRLGIHVSDVAHYVQPNDVIDRTAR 305 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 +RG +VY +++PMLP + N LC+L P DRL + +T+ G++ Y+ +V+ Sbjct: 306 SRGMAVYLGDEIVPMLPPPIPNALCALVPDKDRLAISILITMDDDGQVLEYEIQPSVIQV 365 Query: 378 HARLTYTKVWHILQGDQDLR-----------EQYAPLVKHLEELHNLYKVLDKAREERGG 426 +LTY + IL ++D E++ P++ ++ L+ L + + + R ERG Sbjct: 366 SHQLTYDQAQAILVREEDEELEKLGFSPDDIEEFEPVMDLIDSLYQLSQEVKQRRHERGS 425 Query: 427 ISFESEE---------------AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 + KF ++ E + + A ++ E M+LAN A Sbjct: 426 FELNLPQHEFPPEAEELAEYLSPKFQYDDEGSFGAMVVSDHMPARIIVTEFMLLANQLVA 485 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN--KPEPRDYAELLESVADR 529 R +++ P L+R+H P + + + ++L + + P DY E Sbjct: 486 RHIKELGIPGLYRVHRTPELADVQELVKLANNMEIDLQLEDVEQVAPSDYRNFTEQFKAS 545 Query: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIKYLLAK 588 ++L +LL ++K A+Y HFGLA+ +Y HF SP+RRYPDL +HR + + Sbjct: 546 KSEKVLTYLLLATLKPALYSARPGPHFGLAIDDAYTHFASPVRRYPDLLVHRLLHAVFKH 605 Query: 589 EQGHQGNTTE----------TGGYHYS----------MEEMLQLGQHCSMAERRADEATR 628 + + ++ G ++S E++ + + ER +A Sbjct: 606 GRDRRSTRSKDRVNLRHSSCHGKINWSVLPPAVQQEMEEQLTRAPIKLTERERITQDAES 665 Query: 629 DVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVG 688 D+ K FM G VF G+I+ V +GFFV L++L ++GLVHVSSL +D+Y + Sbjct: 666 DLEGLKKAAFMQAHTGEVFHGLITGVQSYGFFVELEELLVEGLVHVSSLKDDWYEYRSRQ 725 Query: 689 QRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 Q+L+G + Q YRLGD VEV V++V+ ++ID Sbjct: 726 QKLVGRKNRQQYRLGDHVEVEVKSVDYYRQQIDLV 760 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 214/749 (28%), Positives = 354/749 (47%), Gaps = 26/749 (3%) Query: 23 FILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 IL+++ + P L ++ E + + + +++ + ++ Sbjct: 7 KILDYVNRTGYTPVREKALLKKVGGSKSSSPE-FEQAMANLRSRKEILISDSGLIRPVKK 65 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDL----------YLSSEQMKTCIHGDQVLAQPLGA 131 + GT+ G G+L + DD+ Y+S + GD+V A + Sbjct: 66 EGWIAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYISERDLGDAQTGDEVYATAINR 125 Query: 132 DR-KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 R G+ R+V ++ ++ VG YF G G+V D + I + G R Sbjct: 126 QRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIFNSPIHVGDPGAKGVRSED 185 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VV+++ P++ G I +VLG + G+ + + IP +P+ V + Sbjct: 186 KVVIDILHFPSKNYLGQGVIAKVLGPHGKAGVDLLSIIYEFGIPLDFPEEVLAEAREQAS 245 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 E R DL +VTID DARDFDDA+ + G W L V IADV+++V+ + Sbjct: 246 LFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTRDEKGHWLLGVHIADVAHFVKEGS 305 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LDREA++RGTSVY P +VIPMLPE++SNGL SL R + + +G +F Sbjct: 306 LLDREAKHRGTSVYLPGRVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTPEGIPVHTEF 365 Query: 371 YEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 + R Y +V I+ + D + + A + + L+ ++ L +L R G + Sbjct: 366 ANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVRELLKNMYQLAMMLRGRRFSAGALEL 425 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 E K F+ + R+ + + +++H++IEE M+ ANIS A L R+H P Sbjct: 426 HLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLAANISIAEAFHDRGLRFLRRVHPSP 485 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 +F LG L +D +L+ V P + + LLRS+KQA Y Sbjct: 486 EMPRQLAFAEFANALGFTL--NKVQSRKDLQKLINEVHGTPVEQAINYALLRSLKQAEYT 543 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 + GH+ LA+ Y HFTSPIRRYPDLT+HR I +L + +G + + + Sbjct: 544 DKELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEILERPDKGKGQSPQG---------L 594 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 QLG S+ ERRA+ A R++ +M+D + +I+ V FG F R D+ ++ Sbjct: 595 RQLGHELSLRERRAESAERELTKVKLLTWMIDNNIRTLETMITGVETFGMFCRGTDVPVE 654 Query: 670 GLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 GL+H+S L +DY+ + ++GE +GQ YR+GD + V VE +++D R++DF L + Sbjct: 655 GLLHISRLGKHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEVEKIDLDRRELDFRLPRPK 714 Query: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 + + K + K+ AG K+++ Sbjct: 715 QYGKTKKKGSGAPEKRAPAGAAKSKKKES 743 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 249/759 (32%), Positives = 379/759 (49%), Gaps = 42/759 (5%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDD-LYLSSEQMKTCIHGDQVLAQPLG 130 RR ++ E L++G + HRDG+GF+ + D ++L + + + D+V+ Sbjct: 156 RRGRFSEVEEDGLLEGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAV-- 213 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 + R R E RIVRV+ + VG Y + V P DS L I +P Q+ AR G Sbjct: 214 SGRPPRLEGRIVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVPLTQM--AREGD 271 Query: 191 VVVVELTQRPTRRTKAVG---KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 +V V+L G ++ LG V + +P V + Sbjct: 272 LVKVQLGIGAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADR 331 Query: 248 LKEEVPEEAKAG--RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYY 305 V EE G R DLR +PL+TIDGEDARDFDDAV E + G WRL VAIADV++Y Sbjct: 332 YAVTVTEEEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDRADG-WRLVVAIADVTHY 390 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V + L+ EA R TSVY P +V+PMLPE LSNG+CSL P DRLCMV +MT +G Sbjct: 391 VWEGSALNAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRGHR 450 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 Y Y AVM S AR TY +V +L G D R + P H E L +L + L K R+ER Sbjct: 451 RSYDLYPAVMRSVARCTYNEVQDVLDGKDVPHRNAHKP---HFERLMSLARALMKMRKER 507 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G I F+ E K + + + R+++ +R D+H+LIEECM+ AN + A F + P ++R Sbjct: 508 GAIDFDLPEHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPTVYR 567 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 H +P E + +F ++ G ++ + ++ + + P+ L +LLRSM Sbjct: 568 FHGEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQLLLRSMM 627 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 QA+Y GH+GLA + Y HFTSPIRRYPDL +HR +K A +G Sbjct: 628 QAVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWA----RKGRKPSQSMLER 683 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 +++ + CS ER A + R+V + C M D+VG F ++++T FGFFV LD Sbjct: 684 EEDQLEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEEFAATVAAITDFGFFVELD 743 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS- 723 ++ ++GLV +L + D++ L+ ++G+ R+G ++ VR+ +VN+ +KIDF Sbjct: 744 EVHVEGLVKAETLGPGA-KLDKLTHSLVY-ANGRRVRVGQKLRVRLTSVNVTAKKIDFEA 801 Query: 724 LISSERAPRNVGKTAREK------------------AKKGDAGKKGGKRRQVGKKVNFEP 765 L AP + T E+ ++ AG+ G + R+ P Sbjct: 802 LQFDGEAPLSRVATRGEQPQRRQAWTAEAPSHRERDGRRERAGRPGRREREAAAASRGAP 861 Query: 766 DSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAK 804 + +P+ + +R+ ++ + + + Sbjct: 862 SGQYEETGPGRPRG--RFSREGRREESAPHRKEPRFPPR 898 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 211/787 (26%), Positives = 365/787 (46%), Gaps = 45/787 (5%) Query: 6 FQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 +E + + N + E + K P S + L L + + E + L +++ Sbjct: 20 RSAKEEKLFNNLLKITEQFMR--GKSFMPLSLEVLMQRLALP-PQHKEIFQEVLNKLQQQ 76 Query: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFL---RVEGRKDDLYLSSEQMKTCIHGD 122 G + + + D+V G + H G+GF+ + + D+++ K + GD Sbjct: 77 GLIESKEEKYEWKKSQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGD 136 Query: 123 QVLA---QPLGADRKGRREARIVRVLVPKTSQIVGRYFT-EAGVGFV--VPDDSRLSFDI 176 V Q + +D+ E +IV +L + + G + F+ VP + Sbjct: 137 VVEVILNQEVISDKG--PEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHVPLL-GTQQRV 193 Query: 177 LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 ++ P + ++G +V+E+ ++ T+ + + LG V A+ E+ Sbjct: 194 VVHPTEEHQLQIGDRIVMEVIDWGSKETETICRFSHYLGHISDPSCDVYAAIEEFELRSD 253 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + A ++ L + V ++ R DLR+L +TID + A+DFDDA+ + G + L Sbjct: 254 FQTAAIEEANNLGKSVSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLA 313 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+YV+P T LD EA+ R S YFP +PMLP LS LCSL P V+RL + Sbjct: 314 VHIADVSHYVQPGTALDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVL 373 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 M + S G L Y+F +V+ S R TY + +L G ++ +P HLE + L ++ Sbjct: 374 MRIDSSGNLLDYRFTRSVIKSAKRFTYKEAKKVLDG-----QKNSPYKPHLELMVELCRL 428 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L + R ERG I F E + + + + E + H+++EE M+ AN A + + Sbjct: 429 LKQKRYERGSIEFSLPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQ 488 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 + +RIHD+PS E + F ++ A G +LP + P P+D +L E A+ + L Sbjct: 489 KGKNLTYRIHDEPSEENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLA 546 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 + +R M+ A Y EN GH+GL+L Y HFTSPIRRY DL +HR + Sbjct: 547 SSYIRRMRLAAYSAENIGHYGLSLTHYCHFTSPIRRYVDLVVHRIL-------------- 592 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF----MLDQVGNVFKGVIS 652 G +++ ++ +CS ER + +A V K + ++ +I+ Sbjct: 593 ---FGESDRFDDLQEIANYCSEQERISAKAENSVVILKKLRLLEERHQKAPEHEYQAIIT 649 Query: 653 SVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA 712 V FG + + DL ++G +H+S L DY+ +++ L G G Y GD + V +E Sbjct: 650 RVKNFGIYFEIFDLLLEGFIHISDLGEDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEK 709 Query: 713 VNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGE 772 ++ ++ + ++ S P+ AR+++ + K K+ GK + +A + Sbjct: 710 IDFISQETKWYVLPSVSTPKKS--IARKRSASKEYQKHLNKKCSTGKYNLKKKQAASMTK 767 Query: 773 KKTKPKA 779 K + Sbjct: 768 LGKKKRK 774 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 600 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 220/707 (31%), Positives = 351/707 (49%), Gaps = 21/707 (2%) Query: 31 REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER---LDLVKG 87 + +P +L + + + + L + D +V + + + Sbjct: 12 QNQPCMVKDLKAKFGGDRAADRKVM-EALDELVHD-AVVCQKSGVFFTARSGRAEKALPC 69 Query: 88 TVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLV 146 V+ + F+ +E D+++ + + GD VL + R +G E I+ VL Sbjct: 70 KVVKLGKNFAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLE 129 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 K +VG G VPDD + I D GA+ G V VE+ QR TR+ Sbjct: 130 QKND-MVGTVRRIEGRLKFVPDDCPAIS-MTIQRDCEGGAKDGDKVAVEILQRGTRQEDH 187 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE-EVPEEAKAGRVDLRD 265 + G L +I +P+ V + ++ V EE GR+DLR Sbjct: 188 RVGVSMRFGSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRA 247 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 LP+ TID + +D DDAV + GGG+ L V IADVS+YV+P + L+ EA NR TSVY+ Sbjct: 248 LPIFTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYY 307 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 QV+PMLP+ LSNG+CSLN + RL C M + G LT YKF ++++ S + Y++ Sbjct: 308 ADQVVPMLPKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTDYKFVKSIICSRVKGVYSE 367 Query: 386 VWHILQGDQDLREQ--YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 + +L G D Q YA ++ L + LY + R+ERG I FES E K I + Sbjct: 368 INALLAGTADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGH 427 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 +++ ++ +IEE M+LAN AA F + P ++R+H++P+ E + S+L Sbjct: 428 CIDVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQA 487 Query: 504 LGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 G+ + P P++ + +LE V P +++ T +LR M +A Y+ + +GH+GL L+ Sbjct: 488 CGINDHFAKEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKD 547 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 YAHFTSPIRRYPDL +HR + LL+ G ET Y+ + + + S E Sbjct: 548 YAHFTSPIRRYPDLAIHRMMTDLLS------GTDKETMIVRYT-DFAEKASKQSSEREVL 600 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A + R D+ K ++ +G ++G+IS VT G FV L++ ++G V SSL Sbjct: 601 AVQIERKAEDYYKAEYARRHLGECYEGIISGVTQRGIFVELEN-GVEGFVPASSLTATGT 659 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 + G RL +SG+T+ LGD + + + +++ K+DF + + Sbjct: 660 TLTE-GIRLSDPASGKTWSLGDSMMITIVRADINLGKVDFEVAPETK 705 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 282/815 (34%), Positives = 403/815 (49%), Gaps = 50/815 (6%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P PSRE +LE + R E+A HI G E+ LR L+ +E +G L R + Sbjct: 55 PFPSREQVLEFIRAANGEVDRREIARAFHITGPER-ADLRTLLKELESEGALQRGRGRRI 113 Query: 77 ALPERLDLVKGTVIGHRD--GYGFLRVEGRKDD-------LYLSSEQMKT------CIHG 121 A P L V ++ D G F + E +D L+ + G Sbjct: 114 APPGSLPEVAVLIVARADAEGDLFCKPEHWPEDEEPPRILLWPEPHHARRPGVGAEIGVG 173 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ R +AR +R L S+++G + P + R + L+ P+ Sbjct: 174 DRILARLTRIG-DARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPE 232 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 GA G +V EL P+RR K++E LG G + + +H+IP +P Sbjct: 233 DAGGAEPGELVEAELL--PSRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFPPE 290 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLW 296 E GR DLR +PLVTIDGEDARDFDDAV+ E GGWR Sbjct: 291 ----ALAEAEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRAL 346 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADV++YVR LD+ AR RG SVYFP +V+PMLPE LSNG CSL P DR C+ Sbjct: 347 VAIADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVW 406 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYK 415 M ++G ++F +M S ARLTYT+V G D + APL + + L+ +++ Sbjct: 407 MIFDAEGNKLRHRFLRGLMRSAARLTYTQVQAARDGHAD--DLTAPLQERVIAPLYGVFQ 464 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L AR RG + + E K + + + RIE R D+HKLIEE MI AN+SAA +E Sbjct: 465 ALLGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLE 524 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 + + P ++R+HD+P+ + + + L L + G+ + +L++ P M+ Sbjct: 525 EKRRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMV 584 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 ++LRS QA Y P+N GHFGLAL+ YAHFTSPIRRY DL +HRA+ L Sbjct: 585 NEVVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLG------ 638 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + G + E+ ++ H + ERRA +A RD + F+ +VG F G I+ VT Sbjct: 639 --DDGLRPGAEEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVGATFAGRINGVT 696 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G FV L+D DGL+ + SL NDYY D L G+ G + LG VEV + N Sbjct: 697 RAGLFVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANP 756 Query: 716 DERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK-- 773 + F L+ G A +G +GK G R +GK E +A + +K Sbjct: 757 VSGGLVFGLLQ--------GGVAGAAKGRGFSGKTKG-RDGLGKTRLKERGAAAKLKKGA 807 Query: 774 KTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAK 808 + KPKAA +DA + + +K T ++R + Sbjct: 808 RGKPKAAGRDALAGEPVGSGPKKRPPTTTSRRKTR 842 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 246/727 (33%), Positives = 365/727 (50%), Gaps = 40/727 (5%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 +LE ++ +P D L + + + L +L A+ +GQLV + +A + L Sbjct: 18 ELLEIFHEQNRPLRLDALLRVTGLPRAAR-KMLEDQLYALADEGQLVRLQGGLWARADGL 76 Query: 83 DLVKGTVIGHRDGYG-FLRVEGR-----KDDLYLSSEQMKTCIHGDQVLAQPLGAD--RK 134 ++G + R G G F+ G D+++ Q H D V R Sbjct: 77 RQIRGRYMALRSGAGGFVTPLGDNGQVTGPDIFIHPLQAGDAWHQDMVRVALSPRSHARG 136 Query: 135 GRREARIVRVLVPKTSQI-VGRYFTEAGVGFVVPDDSRLSFDILIP-PDQIMGARMGFVV 192 +E RIV VL ++ V P DSR+ FD+ + P+ + G ++ Sbjct: 137 KSQEGRIVEVLERGCREVPVHVIHVTGRRALCRPADSRMPFDVSVELPEDMERPSGGSLL 196 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 +V +R ++++ +G + D+ HE+P +P V+ + L Sbjct: 197 LVAPEKR-LAADLWQARLLQSVGREDDIAVQEDLVKLNHEVPREFPPRVQAEADALPSAP 255 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 AGR D+R LPLVTIDG DARDFDDAV E + GGGW L VAIADVS+YVRP + L Sbjct: 256 RHADMAGREDVRALPLVTIDGADARDFDDAVQVEARPGGGWLLRVAIADVSHYVRPRSAL 315 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D EA RG S YFP+ V PMLP L +GLCSL P DRL M+ E+ S+ G+ +F Sbjct: 316 DTEALARGNSWYFPTSVEPMLPPALCDGLCSLRPDEDRLAMLAEIPFSATGQPGKPRFAA 375 Query: 373 AVMSSHARLTYTKVWH-ILQGDQDLREQYA------PLVKHLEELHNLYKVLDKAREERG 425 VM S ARLTY +V +L D+ R A ++ LE LY+ L +AR+ RG Sbjct: 376 VVMRSAARLTYDQVKACLLDRDEQARAALAAGPRGQEVLDMLETAFELYRCLREARQRRG 435 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-------- 477 + F+ E ++ F+ + R+ R+ + R+DAH+LIEE MI AN + AR + Sbjct: 436 SLDFDLPEPEYSFDDKGRLLRVSRRVRHDAHRLIEEFMIAANEAVARHLGGLKADGSPEG 495 Query: 478 --KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 KEP L+R+H +P E + S L + EL KP +L V ++ Sbjct: 496 APKEPFLYRVHPQPDPERLESLFDSLEAIDPEL-VPVKPAASALQGILRDVQGSDREFLV 554 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 + LR+M QA Y PEN GHFGLA ++Y HFTSPIRRY DL +HRA+K L G Sbjct: 555 GRLCLRAMPQARYQPENEGHFGLASRAYCHFTSPIRRYADLLVHRALKASLGLYDGALPA 614 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + +L++ + ER A + R++A L C + +VG F+GV++ V Sbjct: 615 GQK----------LLRVADQLNRRERDALDCEREMARRLACMALEGRVGERFRGVVAGVN 664 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L+++ ++G++ V L +D+Y FD Q L+G+ SG + +G +EV + V+ Sbjct: 665 DFGLFVELNEMPVEGMIRVEDLGDDWYDFDVRRQCLVGQRSGLCWSMGQSLEVVLAEVHS 724 Query: 716 DERKIDF 722 +I Sbjct: 725 GRLEIRL 731 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 213/710 (30%), Positives = 344/710 (48%), Gaps = 20/710 (2%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 I +E I E L A EL L + ++Q ++ +E++G LV T++ Sbjct: 3 ITIKEKITEALENYRDAAEPLELFRALGLNDKDQFAA---AVQELEQEGVLVATKKGRLL 59 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + L +I G+ F R +D+Y++ E K + GD VL + + KG Sbjct: 60 SVKSAGLTPAQMISQSKGFSFARPLEGGEDIYVAQEDRKRAMLGDTVLLRDIRDSGKG-L 118 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 R+ +++ G G + D + + + + + G V + Sbjct: 119 SGRVEKIIRKGNRLFTGTVV-RRGRDLELELDGAFRYQVPVEKKGSLHGKNGDKVQA-IL 176 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLK-EEVPEEA 256 R K +I++V G + D + + IP + + ++ L E + Sbjct: 177 SYGPRSGKLTARILKVYGKAASAKVCADAIIDANGIPKKFKKETLREAEKLSREPITPAE 236 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 + R DLR+ + TIDG DA+D DDA+ EK G W+L V IADVS+YV+ + +D EA Sbjct: 237 RKKRADLREQLIFTIDGADAKDLDDAISVEKDGAG-WKLGVHIADVSHYVKEGSLVDEEA 295 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 + RGTSVYF +VIPMLPE LSNG CSLN ++L C MT+ KG L GY+F ++V+ Sbjct: 296 KQRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMTLDRKGNLRGYRFQKSVIC 355 Query: 377 SHARLTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 S R Y +V +L+G + L+E+Y P++ L+ L ++L+ RG + FES EA Sbjct: 356 SKVRGVYDEVNQVLEGCAAERLKEKYQPVLASLQAGQELAQLLEAKGRRRGTMDFESSEA 415 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 +F + I + + K+IE+ MILAN +AA + + + P ++R+H+ P E + Sbjct: 416 RFFLDRNGTCVDILPRSQGLSEKMIEQFMILANQAAALYAKCLEIPFVYRVHEDPDPERL 475 Query: 495 TSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + + A LGL D ++LL P ++ +LR++ +A YD + Sbjct: 476 NTLQQLAAGLGLRARRIQEGVRSADLSDLLRQAEGTPAQNIINHQVLRTLAKARYDNKPL 535 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGL L Y HFTSPIRRYPD +HR + + +G + + +S E Sbjct: 536 GHFGLNLDDYCHFTSPIRRYPDTAIHRILTGV---AEGITVDRLQKKYQDFSRE----AA 588 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 S E RA A R ++M +G F G++S T G FV+L + ++G V Sbjct: 589 VLSSACELRAQRAERQAEKCYMAEYMRRHLGETFDGIVSGATARGIFVQLVN-SVEGFVG 647 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 V + ++FD + SG+ +GD ++V+V A ++ +IDF+ Sbjct: 648 VEDFPDCEFQFDGL-LTHTDVRSGRRLTVGDPMKVQVAAADVATGRIDFT 696 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 240/762 (31%), Positives = 376/762 (49%), Gaps = 40/762 (5%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 + K N P++E IL + + +S+ E+A +++G+ ++ LR LR ++ + Sbjct: 12 SSFKEKN-FPNKEEILSFINENPNHSSKREIAKAFNLKGDSRI-WLRDILRELKDQNPIS 69 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH--------G 121 R++ + + + G F+ +D + ++ + H G Sbjct: 70 KQRKRAINKGKLPPVTLVKISGRDKDGSFIAQPLEWEDSPKPNIEIHSFHHIKGSSIGVG 129 Query: 122 DQVLAQPLGADRKGRRE----ARIVRVLV-PKTSQIVGRYFTEAGVGFVVPDDSRLSFDI 176 D +L + RI+R + S E + P D + + ++ Sbjct: 130 DHILVKVFRNKNSESSSPLYMGRIIRKIDVSPKSAFAVVRKFENNQWRLDPIDRK-TNEL 188 Query: 177 LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 ++ M +G +V VE+ + T KI VLG IA+ + IPYI Sbjct: 189 IVEMSPEMKIEIGDLVEVEIKK-NTGYGLKSAKIKNVLGHIKSEKTLSMIAILSKGIPYI 247 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKR----GGG 292 +P++V +QV +K R D R LP +TID DA+D DDAVY K + G Sbjct: 248 FPESVLEQVKHIKA----ANMDNREDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDG 303 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 W + VAIADVSYY++ + LD+EA RG SVYFP V+PMLPE LS+ LCSL +R Sbjct: 304 WIIIVAIADVSYYIKTGSALDKEALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPA 363 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELH 411 + M + G + F+ ++ A+L+Y +V ++G+ + E+ A L + L+ L Sbjct: 364 LAVRMIFDANGNKRKHSFHRTMIRVRAKLSYQEVQLAIEGN--INEKTAALFESILQPLW 421 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 Y L AR R + E E K I + I+ + + +AH+LIEE MI ANI+A+ Sbjct: 422 EAYTCLKAARNRRQPLELEIAEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAAS 481 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD 531 +++ +P ++RIH+KPS RS L LG+ L G++ +L V + P Sbjct: 482 ETLKQHHQPLIYRIHEKPSLAKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQ 541 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 E++ ++LRS QA Y+P+N GHFGL L +Y HFTSPIRRY DL +HRA+ L Sbjct: 542 KELINQVILRSQSQAEYNPKNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGND 601 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 +T E + + ++ S+ ERRA A R+ D L ++ +++G +F G I Sbjct: 602 QLTDTQE--------QNLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIGRIFTGRI 653 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 S VT G F+ LD L DG VH+S+L NDYY FD+ L+G+ S + Y+L D VEV++ Sbjct: 654 SGVTKAGLFISLDKLNTDGFVHISTLKNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLI 713 Query: 712 AVNMDERKIDFSLISSER----APRNVGKTAREKAKKGDAGK 749 V + F L++ R +P + K +K K GK Sbjct: 714 TVQPFAGALSFELLTKPRPIKFSPTSYHKNKLKKQKHTFYGK 755 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 254/791 (32%), Positives = 381/791 (48%), Gaps = 34/791 (4%) Query: 5 PFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 P + +N IPS+E IL+ +T S+ ++A I+G +++ L+R LR ++ Sbjct: 4 PHLRATSPPMSN-IPSKEQILQWITDNPGKRSKRDIAKAFGIKGAARID-LKRILRELQE 61 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGH---RDGYGFLRVEGRKDD------LYLSSEQM 115 +G L R Y P++L V + +G F R + LY Sbjct: 62 EGHLEKVGR-TYRDPDKLPPVT-ILSVQAPDDNGDLFARPLEWHGEGVEPRVLYTPRTAD 119 Query: 116 KTCIHGDQVLAQPLGAD----RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR 171 GD++LA+ + + A+++R + +I+G + A G + P Sbjct: 120 PAVGQGDRILAKLFAVEGSDAEDHQYTAKLIRKIGTNPRKILGIFRKGAEGGVITPISKG 179 Query: 172 LSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTH 231 + + GA+ G +V EL R +I +GD IA+ H Sbjct: 180 SDKEWQVRAGDTHGAKDGELVEGELAGPKARMGAPRARITTRVGDPGAARAVSLIAIHEH 239 Query: 232 EIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG- 290 IP +P V + K GR DLRDLPL+TID DARD DDA Y Sbjct: 240 GIPDSFPNKVVAEADAAK----PAGLTGREDLRDLPLITIDPADARDHDDACYAHADEDP 295 Query: 291 ---GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 GG +WVAIADV++YV P + LDREAR RG S YFP +V+PMLP+ LS LCSL+ Sbjct: 296 GNKGGHVIWVAIADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEG 355 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK-H 406 V R + M + ++G G+ F+ +M+S A L+Y + +G L E+ APL++ Sbjct: 356 VPRAVIAVRMVIDARGEKIGHTFHRGLMTSVASLSYEEAQAAQEGT--LSERTAPLIEGS 413 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 + L Y L AR +R + + E + + + + R DAH+LIEE M+LA Sbjct: 414 IRPLFAAYDALKIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMVLA 473 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV 526 N++AA + + P LFR+H++PS E + + R V A GL L G + R LL Sbjct: 474 NVAAAETLIAKRTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALL-KA 532 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 A +E++ LRSM+QA Y+PEN GHFGLAL+SYAHFTSPIRRY DL +HRA+ Sbjct: 533 AGEDTSELISISTLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRALIAA- 591 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 G + G +E + + S ERR+ A RD +D ++ D+VG Sbjct: 592 ---HGWGPDAKIDGLSPDEIERLEDTAKLISGTERRSMVAERDTSDRYLAAYLSDRVGAE 648 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F G IS + FG FV+LD+ DGL+ + +L +Y+ FD Q LMG +G +GDRV Sbjct: 649 FGGRISGIARFGVFVKLDETGADGLLPMRALGQEYFHFDAEAQTLMGADTGTMISIGDRV 708 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD 766 V++ + L+ + + G + G K RR+V + Sbjct: 709 LVKLAEAVPVTGGLILELLEHDGKAPSRGSGRGARKGGGRGRGKPPARRKVSASKARKTK 768 Query: 767 SAFRGEKKTKP 777 + + +++P Sbjct: 769 -LRKKQDRSRP 778 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 214/761 (28%), Positives = 366/761 (48%), Gaps = 35/761 (4%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 KY N E + L ++ + + + + L M ++V Sbjct: 3 KYKN----YEAVKTQLESLKEKVLLSAFIESVVESKKINVGEIDEVLEEMSLSKEIVIDG 58 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 Y + + + G+ R+ + F E D Y+ + + D VL + + Sbjct: 59 EDLYYI-DNVKYGIGSFRVVRETFAFA--ETISDSFYIGKDDFNGALDMDDVLFEIKSNE 115 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 ++ +++ + I+G + F +P D++++F + + + Sbjct: 116 KR---FGVVIKSVKRNRDVILGTMKKDGKKLFFIPYDNKITFKVEYDASNL-DLKENDRC 171 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 + +T R I+ VLG GM V L + I + Q V ++ + E+ Sbjct: 172 IGRITSVGERIH---VDIISVLGQADEPGMDVLSVLFVYGIDNDFKQEVLDEIKNVPTEI 228 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + R+D RD ++TIDGEDA+D DDA+Y E GG+RL+V IADV +YV+P T L Sbjct: 229 DQNETKHRMDHRDQYVITIDGEDAKDLDDAIYMEAL-NGGYRLYVHIADVGHYVQPQTAL 287 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D+ A R +SVY +V+PMLP+ LSNG+CSL+P VDRL M C++ +S G + Y YE Sbjct: 288 DQSAYERSSSVYMVDRVVPMLPKELSNGICSLHPNVDRLTMTCQIDISYAGEVIDYNIYE 347 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 +V+ S R++Y +V + + + + + + L R + G I F+S Sbjct: 348 SVICSKRRMSYKEVN--------TSPDLGEVQEMVSMMLDCARRLQYKRNQAGQIGFDSA 399 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E++F+ + E + I +R +A ++IE M++AN A+ P L+R+H+ P E Sbjct: 400 ESQFVIDHEGNVLDIFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDRE 459 Query: 493 AITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + L LG L G + P++ + L+ +P+ ++ ++LRSM +A Y E Sbjct: 460 KMQELSHTLRILGYRLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQE 519 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GHFGLAL+ Y HFTSPIRRYPDL LH+ IK + + ++ Sbjct: 520 PLGHFGLALEDYTHFTSPIRRYPDLLLHQRIKQY--------AVKHDFSKLEKDEQFTIE 571 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 G H S ER +A R V K FM +++G + G IS ++ FG FV L + ++GL Sbjct: 572 AGLHVSKKERSILDAERQVEKIKKAQFMSNKIGEEYVGFISGISNFGIFVELPNT-VEGL 630 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 +HV +L++D+Y FD Q+++GE +G+TY +G +++V++ +V+ E ++F +I ++ Sbjct: 631 IHVRNLNDDFYTFDGPSQKMIGERTGRTYSIGQKLKVKLVSVDDLEHVVNFEIIGQKKMS 690 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGE 772 R + ++ K D + R +K D + Sbjct: 691 RRKPDSRKDGFKSKD--RPSESRNTDKRKGRRINDRRRKKS 729 >UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n=18 Tax=Cyanobacteria RepID=B2IW45_NOSP7 Length = 784 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 203/767 (26%), Positives = 357/767 (46%), Gaps = 50/767 (6%) Query: 21 REFILEHLTKR---EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 EF + L +K +R L +L E E+ L+ L L +E+ G LV R Y Sbjct: 1 MEFSIATLLANFTDDKLVARKVLEKKLGCEDEKSLQKLHIALDVLEKIGILVKER-GKYR 59 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLG-ADRKG 135 +++ + G+ F + +D+Y+ + +GD+VL + L R+ Sbjct: 60 RVSEEGIIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRR 119 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM-GARMGFVVVV 194 E + +L ++ R VP D RL F++ I P+++ + +V V Sbjct: 120 SPEGEVKLILERSNHTLLARIKQVETGFRAVPLDDRLLFELKIQPNEVKLEEAIDHLVHV 179 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+ + P + +G++V++LG + +D+ H++ +P V + A L +++ + Sbjct: 180 EVLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDHVLEAAAKLPKKLLK 239 Query: 255 EAKAGRVDLRDLPLVTIDGE--DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 R+DLR+L +TI+G D + ++A EK G W L V I DVS+YV+P L Sbjct: 240 ADLKNRLDLRNLFTLTIEGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHYVQPDEAL 299 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFY 371 DREA RG SVY V+P+LP V++ CSL P DRL + +T+ + G + ++ Sbjct: 300 DREALKRGKSVYLGELVLPILPPVVAER-CSLIPGSDRLTISFLITIDPQSGEVLEWEIQ 358 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +V++ LT + IL G+ + Q +V+ L++L L + + R RG + Sbjct: 359 PSVINVETALTTEQAQAILTGESQV--QSPQVVQILQDLQALQTGVKQVRLNRGSLQLNL 416 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 ++ + E + + L+ E ++L N A + PA++R+ P Sbjct: 417 PPSQNAYYDEGILGAVVVND-LPVRSLLTELVLLVNQLIATHLNALGVPAIWRVQGTPDV 475 Query: 492 EAITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 E + + LG++L + + P DY L + A+ P ++L +L ++K + Y Sbjct: 476 EDVQEMLKLAVNLGVDLTLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDTLKPSAYS 535 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT----------TET 599 HFGLAL Y HF++P+RRYPDL + R LL + + + Sbjct: 536 TTKGSHFGLALPQYVHFSAPLRRYPDLLMQRVYYTLLENGRDRRNTRVRERVNLRHSSSH 595 Query: 600 GGYHYSM----------EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649 ++++ ++ ++ + E+ EA D+A K M ++G VF+G Sbjct: 596 EEINWNVLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQG 655 Query: 650 VISSVTGFGFFVRLD--------------DLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 VI+ V +GFFV ++ L ++GLVHVSSL +D+Y + Q L G Sbjct: 656 VITGVQSYGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYRARQQALFGRK 715 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 + +YRLGDRV V+V++V+ ++ID + S+ P+ + + Sbjct: 716 NRASYRLGDRVAVQVKSVDYYRQQIDLVTVGSDGVPKGLTGNGSNEE 762 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 219/720 (30%), Positives = 368/720 (51%), Gaps = 19/720 (2%) Query: 23 FILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 I+ L + + EL I+ +E + R + M +G++ +T+ + + L + Sbjct: 8 KIIASLKRAGCRGMVFAELKKICEIKPKET-DRFRGAVNRMVAEGKIAYTKNRFFHL-KS 65 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 + + ++ + + F + + +++ + + I GD VL +P A E ++ Sbjct: 66 IGVYAAEIVRNSRTFCFAQRASDEARIFIPGKYSRGAILGDLVLVRP-QAQLGDSEEGQV 124 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 + S G E FV PD+ I + I A+ G V+ ++ R + Sbjct: 125 FSIYKNGPSAFSGVLMQEDEDYFVQPDN-LSKDRIPVRSKSIGDAKPGDKVLAKVVLRGS 183 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-VPEEAKAGR 260 R ++ + ++ G L H I +PQ V +Q + E+ + + + R Sbjct: 184 RHSEHICELTGAYGSAETAAACARAVLDAHGITEEFPQEVLEQARSISEQGIRDSERVHR 243 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +DL DLP+ TID D++D DDA+ EK + + V IADVS+YV TPLD+EA RG Sbjct: 244 LDLTDLPIFTIDSADSKDLDDAISIEKAED-CYHVGVHIADVSHYVGYRTPLDQEAFRRG 302 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TS+Y+ ++VIPMLP+ LSNG+CSLNPQ DRL M VS G L + F + V+ S + Sbjct: 303 TSIYYANRVIPMLPKELSNGICSLNPQEDRLAFSALMNVSLDGELMDFTFRKTVIRSRVK 362 Query: 381 LTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 Y +V +L+G D+DL+++Y+ ++ L+ +H LY+ L + + +RG E+ E+K I Sbjct: 363 GVYKEVNALLEGGADEDLKQKYSEVLPSLQLMHELYQRLFQNKVKRGAPQLETSESKIIV 422 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + I+ + + +IEE M+LAN +AA ++ K P ++RIH+ PS E ++S + Sbjct: 423 DENDVAVDIQPRVQGLSEGMIEEFMLLANEAAATLAKREKLPFVYRIHEHPSPEKLSSLK 482 Query: 499 SVLAELGL-ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 +L LGL L K +P A +L S D ++ T +LRSM +A YD GH+G Sbjct: 483 EILERLGLPSLRVDKKVKPGVLAGILTSSRDSGLFPIINTQVLRSMAKAQYDERPVGHYG 542 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LAL++YAHFTSPIRRYPDLT+HR + + + T + + + Q + + Sbjct: 543 LALENYAHFTSPIRRYPDLTIHRILTEYV------VLHETPDKIHKRYDKFVAQASKQST 596 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 E A + R+ D K +++ +G F G+I+SV G G ++ L++ ++G V V L Sbjct: 597 ETEITAMQIERECNDRYKAEYIRQHIGEEFDGIITSVLGRGLYIELENT-VEGYVKVEDL 655 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 + Y D L +G+ YR+GD+V ++ AV+++ +IDF + + Sbjct: 656 NG-IYEHDGFT-ELKNHQTGKRYRVGDKVRIQCVAVDVNAGRIDFIIPDDHAEVPQERRR 713 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 225/683 (32%), Positives = 344/683 (50%), Gaps = 31/683 (4%) Query: 62 MERDGQLVFTRRQCYALPERLD--LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 M R RRQ A + L+ GT+ R G + L+ + + Sbjct: 1 MARKRIHKGNRRQGRAKVSKRPSTLLTGTLSLSRPGVATVSTPEGM--YALAKHGIHEAM 58 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 HGD+V + A K A + VL T +G Y +G VVP DSR+ D + Sbjct: 59 HGDEVQVSLVSAKGKA-PLANVRFVLTRATQTFLGIYHDAGPLGAVVPLDSRIQRDFFVL 117 Query: 180 PDQIMGAR----MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 P+ R G VVV +T+ PTR++ AV I +G M V+ + ++ + Sbjct: 118 PEDPSVGRHYVFEGDVVVARITEYPTRKSAAVVTIERRVGSAEDLDMNVEATIASYGLAT 177 Query: 236 IWPQAVEQQVAGLKEEVPEE--AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 +P +Q + + + A R DLR+ +T+D DA+DFDDAV K G + Sbjct: 178 EFPIKALRQAEKISVDADKALAEDASRHDLREELCITVDPADAKDFDDAVGARKLEDGSF 237 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 LWV IADV++YV+ +P+D EAR R S Y +V+PMLPE L N +CSL P DRL M Sbjct: 238 ELWVHIADVAHYVKWDSPIDLEARMRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAM 297 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL------REQYAPLVKHL 407 +M +SS G++ G +V+ S ARL+Y +V LQGD RE + + + Sbjct: 298 SVKMKLSSSGKILGATAMNSVIRSRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMI 357 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + L+ + + ++ RE+RG + FES E + + + + + +R A LIEE M+ AN Sbjct: 358 DVLNQIRALREEIREKRGSVDFESVETRVVLDENNKPVGVSVRERTQATGLIEEAMLAAN 417 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG-LELPGGNKPEPRD---YAELL 523 S A + + + +R+H++PS E++ + L +G LE ++ D E L Sbjct: 418 ESVAHMLSQHDLESAYRVHEQPSPESLKLAITPLVAMGALEPDVASRIAIGDQTALQEAL 477 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 ESV + ++ LLR+ K+AIY P N+GHF L +Y HFTSPIRRYPD+ +HR +K Sbjct: 478 ESVHGTRYSRVVNAQLLRAQKRAIYLPTNQGHFALGADAYCHFTSPIRRYPDVIVHRTLK 537 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 LL + + + + + CS ER+AD A R ++ ++ Sbjct: 538 RLLCGQTAARAE----------LSALADICSTCSEQERKADAAARATQKIKLAEYYQSRL 587 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G G I FG F+ LDD + DGL+ V L +++Y +DQ L+GES+G+TYR+G Sbjct: 588 GEETWGTIDGCERFGLFITLDDTYADGLLTVRDLGHEWYVYDQETLALIGESTGKTYRIG 647 Query: 704 DRVEVRVEAVNMDERKIDFSLIS 726 RV V++ VN+ +ID +L+ Sbjct: 648 GRVRVKISGVNVARGQIDLALVE 670 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 240/717 (33%), Positives = 350/717 (48%), Gaps = 26/717 (3%) Query: 67 QLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 ++ TRR PE G + H GYGF+ +E +++ + + GD+V+ Sbjct: 279 EITRTRRGE-TRPEEDLSRTGRITVHPAGYGFVELEDGTGTVFVPARHRGAALDGDRVVL 337 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP--DQIM 184 + E R++ VL +++ G ++ PDD R++ D P D Sbjct: 338 NTWSGYKG--TEGRVIEVLSRGRAKLTGTLQRTGRAVYLEPDDPRIATDYGHVPLIDGPP 395 Query: 185 GARMGFVVVVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 +++G VVE+ + PT VG++V VLG ++ L ++P +P+ V + Sbjct: 396 QSKVGQAAVVEICRYPTHERPELVGRLVRVLGKPDDPRTEIEKILAFADLPTEFPRDVAR 455 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + V + RVDLRD P VTID ARDFDDAV E GG R+WVA+ADVS Sbjct: 456 RGDETSTTVRTRDQVDRVDLRDRPFVTIDPVTARDFDDAVCIEDGPHGGPRVWVAVADVS 515 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV P+DREA RG SVY P +V+PMLP LS G+CSLNP+VDR MV + ++ G Sbjct: 516 HYVEIDDPIDREAAVRGVSVYLPDRVVPMLPLPLSAGICSLNPEVDRCAMVVRLDLTDDG 575 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDKARE 422 R+ F AV+ SHARL Y V L GD + R+ Y P L L L + + R Sbjct: 576 RVLERDFAAAVIRSHARLDYPGVAAALSGDFRGRRDHYRPWAPALSRLAALAQRMRTRRR 635 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQ------TQRNDAHKLIEECMILANISAARFVEK 476 RG + E I +A+ + A++L+EE MI AN + ++ + Sbjct: 636 ARGALELTLAEPYVILDADEAELVRDIVRSKGAEDVRQAYELVEEFMIAANEAVGKYFAE 695 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN---KPEPRDYAELLESVADRPDAE 533 P ++RIH P + + VLA G++L + +P ++E++ +P A Sbjct: 696 RNLPTVWRIHAPPEPDRLHELLPVLANFGIKLTVEDIEAATKPTGMRRIIEAIEGQPAAA 755 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 L +LRS+KQA Y + GHFGLA Y HFTSPIRRY DL +HR +K+ L + Sbjct: 756 SLSFQVLRSLKQAQYSTDPIGHFGLASPFYLHFTSPIRRYADLLVHRQLKHYLHADGKPS 815 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 G ++ + + S ERRA E R+ + FM QVG F G +S+ Sbjct: 816 GGGARIPAA--DIDTLAERCAQISTHERRAVEVEREAVSMYRAYFMRGQVGEQFTGRVSA 873 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 VT FG FV LD F++GL+ + L D + FD RL G SG LGD V + V V Sbjct: 874 VTNFGAFVELDAPFVEGLIKLDDLGADAFGFDASSMRLRGRRSGLRLGLGDPVTIEVTNV 933 Query: 714 NMDERKIDFSLISSERAPRNVGKTARE--------KAKKGDAGKKGGKRRQVGKKVN 762 ++ R+IDF LIS G + K+++ + GG+ + GK N Sbjct: 934 SVARRRIDFKLISVAGRSSPSGGESSGEDEGTPYWKSRRSRNKRPGGRDKDRGKGKN 990 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 190/727 (26%), Positives = 341/727 (46%), Gaps = 32/727 (4%) Query: 19 PSREFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 P IL L + KP + L +L+ + + + + + Sbjct: 11 PLESKILNILKDQNGKPIPINILFKKLNY---GNRSAVYSAIDYLTDNFFIEKLNNGKLI 67 Query: 78 LPERLDLV------KGTVIGHRDGYGFLRVEGRKDDL-YLSSEQMKTCIHGDQVLAQPLG 130 L + GT+I + F +++ K+ Y++ + + + ++ D V + Sbjct: 68 LGYTNGKILDGQTFVGTIIINGKADAFFKIKDEKESFAYINKKNLNSALNNDTVEICLMD 127 Query: 131 AD-RKGRREARIVRVLVPKTSQIVGRYF-------TEAGVGFVVPDDSRLSFDILIPPDQ 182 + ++A + +++ G Y+ + G+ +VPDD +++ I + D Sbjct: 128 KNTYPDLQDAVVTKIIERDRDFFTGTYYLKPTRNKFKKGIELIVPDDKKINLKIEL--DD 185 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 G V+ ++ + + ++LG G + + + I + + + Sbjct: 186 SSDLVNGNKVLFKIAR--ISDGVIYCSVSKILGHIDDVGNDIISIVYDNNIDPEFDEETK 243 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ + + +E A R DL + VTID ++D DDAV K + G ++L+VAIADV Sbjct: 244 EETSKIDFGFSQEEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKDGTYKLYVAIADV 303 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 SYYV+ + L R A RGTS+Y +QVIPMLP LSN +CSLNP R VCEM + Sbjct: 304 SYYVKLHSNLWRSALKRGTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKN 363 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G T + Y A++ S + Y V ++ + + E + + L L L+K RE Sbjct: 364 GEFTNIQVYPAIIFSKYKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSFELDDYLNKKRE 423 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA--KEP 480 + G I+F+ +EAK I + +I+ + + A K+IE M+ AN + + P Sbjct: 424 KDGYINFDIKEAKIILDENEKIKDVVIRETGPAQKMIENFMVAANEAVTLKFHQLCPNLP 483 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTML 539 ++R+H KP + I F+ ++G +P ++ LE + P+ +++ +L Sbjct: 484 FVYRVHAKPEEKRINDFKIEADKIGFIYDRNLTSWKPNTVSKWLEKNKNNPNKDLINMIL 543 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LR+M +A Y N GHFGL++ +Y HFTSPIRR D+ +H ++ + + + + + Sbjct: 544 LRTMAKAKYQTANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFVYEPENYSEQEKD- 602 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 Y + + + E A E RDV ++M +++G + G +S +T FG Sbjct: 603 ----YILCNLDDFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCEYNGFVSYITNFGV 658 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV+L++ I+GLV + +DYY F+Q +G + + LG +V++RV N + +K Sbjct: 659 FVQLENT-IEGLVKPMFIKDDYYVFNQKDLTYVGRNKNRVISLGQKVKIRVVDANKETKK 717 Query: 720 IDFSLIS 726 IDF +I Sbjct: 718 IDFEIIG 724 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 250/767 (32%), Positives = 371/767 (48%), Gaps = 35/767 (4%) Query: 11 AEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVF 70 K +P RE +L L + + ++A ++G ++ LR +R +E G L Sbjct: 11 KPKPPAGLPDRETLLAFLRDAGET-GKADIARHFGLKGADRR-ALREMIRELEAQGALAK 68 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMK--------TC-IHG 121 R+ +A L V + RDG G L V+ K D + + ++ G Sbjct: 69 RGRKGFAEAGSLPPVGVADVVERDGDGELYVKLTKSDDDVPNVRLAPGKGEAAAGAPGLG 128 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++L + G EA++++ L +I+G V P D + +++ P Sbjct: 129 DRLLVR-FERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDPS 187 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + G +V+ ++ R GK++EV+G A IA+ +H IP + +A Sbjct: 188 VAHDFKEGDLVLAQVGTHGGRYGPKPGKVLEVVGTENDPRAASLIAIHSHGIPTGFSEA- 246 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLWV 297 + E AGR DLRDLP VTID DARD DDAVY GG+ +WV Sbjct: 247 ---AEAEAKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFVVWV 303 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADV+ YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL +R + M Sbjct: 304 AIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRM 363 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 GR G++F +M S A+L+Y + + G D + L L+ L + Y+ + Sbjct: 364 VFDKSGRKKGHRFVRGLMRSAAKLSYEQAQAAIDGQPDDK-AGPLLDPILKPLWDAYRTM 422 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 R+ R ++ ES+E + I I I + +AHKLIEE M+ AN+ AA +E Sbjct: 423 KIGRDARSPLAIESDERRIIIKG-GEITSITKRASLEAHKLIEEMMVQANVCAAESLEAK 481 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P ++R+HD PS E + + L L + G P+ + +LLE + P+A ++ Sbjct: 482 RSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPNAAIINE 541 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 ++LR+ QA Y +N GHFGL L YAHFTSPIRRY DL +HR + L Sbjct: 542 VVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTD------ 595 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 G + ++ + + AERRA A RD D F+ D+VG F+G I+ VT F Sbjct: 596 --GLTDQDIAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVGATFEGRITGVTRF 653 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 G F++L D DGLV VSSL +++ D L+GE +G+ + LG VEV++ Sbjct: 654 GLFIKLADTGADGLVPVSSLGQEFFVHDDKMHALVGERTGKRWPLGLSVEVKLVEATPVT 713 Query: 718 RKIDFS-----LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 + F L + PR R+ A K G G RR + Sbjct: 714 GGLLFEMLSEPLPPDPKMPRPRLGARRQAAVKPRGGLPKGVRRGKRR 760 >UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 213/769 (27%), Positives = 359/769 (46%), Gaps = 52/769 (6%) Query: 19 PSREFILEHLT----KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 S+E I L +P+ ++A L + + +RR ++ + +G+L++ Sbjct: 3 VSQELIDRVLRLVHAAEYRPSKPKQIAALLEL-DADGYREVRRVIKQLVLEGRLIYGGNH 61 Query: 75 CY----ALPERLDLVKGTVI-GHRDGYGFLRVEGRK--------DDLYLSSEQMKTCIHG 121 A+ D ++GT G+GF+R +D+++ + + G Sbjct: 62 LVVAAAAVGGPTDQIRGTFRRAMGGGFGFVRPSSGGGNADADVPEDVFVPTGMTAGALEG 121 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAG---------VGFVVPDDSRL 172 D V R+G E ++V VL Q G +F+ G VV D + Sbjct: 122 DLVAVTIEP-SRRGGIEGKVVEVLQRARRQFTGTFFSSPQPDQPGSDTIEGPVVYLD-GV 179 Query: 173 SFDILIPPDQIMGA--RMGFVVVVELTQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALR 229 ++ + + G + G + VE+ P I+E LG + + +R Sbjct: 180 HYEAPVSVGDVRGLPLQDGDKIFVEIVDFPDEESGGGEAVILERLGSSKNPAIDTLTIMR 239 Query: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKA-GRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 + +P + + V + + ++ R DL D+ +TID DARDFDDA+ ++ Sbjct: 240 QYALPDEFSEDVLDEAREQADAFDDDVVPTDRKDLTDMLTITIDPFDARDFDDAISLQR- 298 Query: 289 RGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQV 348 G WRLWV IADVS++V P LD EAR RGTSVY P +VIPM+PE++SN L SL P+ Sbjct: 299 EDGRWRLWVHIADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIPEIISNHLASLQPER 358 Query: 349 DRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY-APLVKHL 407 RL E+ + +T + + A + S R Y ++ + ++ + + + L Sbjct: 359 MRLVKTVEIEMLDDLTITHSEVHNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELL 418 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 +H L + K R + G +S + + K + +++ QT+ ++H++IEE M+L N Sbjct: 419 THMHTLAMQIRKRRFKDGALSMDMPDIKLELDRTGKVKGAYQTENTESHQIIEEFMLLGN 478 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA 527 + A +++ + L RIH P + S + +LGL N + +L+ VA Sbjct: 479 EAVATWLDDQELNFLHRIHAPPERRKLRQLTSFVKDLGLGFD--NVESRFEIQAVLDKVA 536 Query: 528 DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA 587 + +L+SM +A+Y P GH+ L + Y HFTSPIRRYPDL++HR ++ L+ Sbjct: 537 GTTLENAVNFAVLKSMSKAVYGPHREGHYALDKEHYCHFTSPIRRYPDLSVHRLVQRLI- 595 Query: 588 KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF 647 + S E+++LG CS AER A +A R++ F+ + G Sbjct: 596 ---------EQKSTPDESFAELVKLGHECSDAERNAAQAERELIQLKLLHFLKKKQGETL 646 Query: 648 KGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVE 707 + VIS V G R L +DG + V+ L +D YRF++ GQ L G SG +RLGD + Sbjct: 647 EAVISRVFADGIHARCLKLPVDGFIPVTELPSDQYRFERRGQSLTGFKSGNRFRLGDHLT 706 Query: 708 VRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 VR+ V++ +R++ ++ + A + + + G KK R Q Sbjct: 707 VRIGKVDLQDRQLYLEVVKNHSAAK-----SDPRGPSGSKSKKSPLRHQ 750 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 188/726 (25%), Positives = 344/726 (47%), Gaps = 27/726 (3%) Query: 20 SREFILEHLTKREKPASRDELAVE-LHIEGEEQLEGLRRRLRAMERDGQLVFTRRQC--- 75 +++ I E ++K E+P LA + L + + + + ++ + Sbjct: 5 TKQTITEVISKEERPIPAAILAKKVLEKIPTLNKTDVYKLIDLLIQENTIKKLENNRLVI 64 Query: 76 -YALPE-RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVL-AQPLGAD 132 Y E ++ +G + + G GF++ + + + Y++ + + + D V + Sbjct: 65 GYLDYEFDHEIKQGIITINSKGDGFIKEDNTEIEYYVNKKYLNGALKKDSVKFVKLKKEP 124 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 + ++A ++ ++ VG++ T G+ + D L F + I G G + Sbjct: 125 KNNLQDAAVIEIVGHAKDHYVGQFITLPNGGYYIFVDDPL-FYLNINLKDTTGLVNGHKI 183 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 + ++ + T+ A+ ++V ++G G V + + I + V + L+ V Sbjct: 184 LFKIISQTTKD--AIAELVHIIGHKNDVGSDVLSIVYDNGIDPTFDPQVVDLASKLEFYV 241 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 E R + D +++ID ++D DDAVY +K + L ++IADVS+YV+P+T L Sbjct: 242 DEHQNKIRRSIIDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTIL 301 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D +A RGTS Y +VIPMLP +SN +CSLN R+C+ C+M + G++ Y Sbjct: 302 DADAFKRGTSTYLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYP 361 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 A+M ++ +++Y +V +G + + L E L+ +L + + G + F+ + Sbjct: 362 AIMKNYRQMSYDEVNDFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIK 421 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA----------KEPAL 482 E K I + I+ +R A ++E+ MI AN + F E+ + P + Sbjct: 422 EPKIILDETGVPIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFI 481 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+HDKPS + F +L + +P + L+ + + ++ +LLR Sbjct: 482 YRVHDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLR 541 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM +A Y+ N GHFGLA +Y HFTSPIRRYPDL +HR + + Q + Sbjct: 542 SMAKASYEIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSYTDKQRVELV 601 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + + + + E A + RDV ++M +G F GV+++V+ FG FV Sbjct: 602 NKLKL-----ITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFV 656 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L++ I+GL+ + +L +D+Y F L+G+ + +G++V VRV N RKID Sbjct: 657 ELENT-IEGLIRIKNLKDDFYDFIPENMTLVGQKRKKIITVGNKVRVRVIEANKLTRKID 715 Query: 722 FSLISS 727 F L++ Sbjct: 716 FELVAQ 721 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 336/713 (47%), Gaps = 67/713 (9%) Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL 129 TR P +G + G+GF++ + ++ +M GD V PL Sbjct: 3 RTRSHTRRHPRSNP--RGVLSVRGGGFGFVQTAEGE--FFVPESKMAGAFDGDLVEVAPL 58 Query: 130 GADRKGR---------------REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 + AR++RV+ +VGRY G VVP+D+ + + Sbjct: 59 PVQSGRKKQPHERKADLRAGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPY 118 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 DI G +V V +T P+R T A G I EVLG AVD+ + H++ Sbjct: 119 DIFTMRADRPDIEDGSLVRVRITTFPSRNTAATGVIEEVLGLADDEHAAVDVVIARHKLE 178 Query: 235 YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK------- 287 ++ + + + +G DLR+ TID DARDFDDAV E Sbjct: 179 TVFSEGALSEARSAVLDEDGALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCGVG 238 Query: 288 ----------KRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 WRL V IADV++YV ++ LD +AR R TSVY +VIPMLP+ L Sbjct: 239 TGIRVVDERGLGVARWRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPDEL 298 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ------ 391 S LCSL P R M ++ + + RL Y Y A++ SHARL+Y + +L Sbjct: 299 SGDLCSLKPDEVRRTMTADLYLDDRARLVAYDLYPALIRSHARLSYEEAQALLDRCHPER 358 Query: 392 -----------GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 L L L L K +RE GG+ F+S EA+ + + Sbjct: 359 SAEGAESKDLVRRDGACAPGDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVLDE 418 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 E I+ + DA LIEE MILAN + A+ + AK P+L+R+H++PS +++ + V Sbjct: 419 EGSPTGIDLRVKTDATSLIEEAMILANETVAKHLRDAKFPSLYRVHEQPSADSLAALVPV 478 Query: 501 LAEL----GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + ++ + +LE+ A+RP+ E++ T+LLRSMK+A+Y P+ H+ Sbjct: 479 FQDFAWFRDIDQADFIAGDAHVVQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCAAHY 538 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA +Y HFTSPIRRYPDL +HR +K L+ + + + +H Sbjct: 539 GLASGAYTHFTSPIRRYPDLVVHRMLKALIGGRPEK---------FDQEKSALPWIAEHS 589 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A++A R+ + +++ VG F +S V +G +VRLD+ +GL+ + Sbjct: 590 SDMERIAEKAARESQEVKLIEYLERFVGQTFSATVSGVATYGAYVRLDNT-AEGLIPCKN 648 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 L ++Y+ D V RL G+ +G +YRL R+ V + + + R++DF ER Sbjct: 649 LGSEYFALDPVQHRLTGQDTGASYRLAQRLAVVLVSADPRARRLDFRPARDER 701 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 212/744 (28%), Positives = 357/744 (47%), Gaps = 38/744 (5%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 L + K K S ELA L I ++ E L ++ + ++ T Y +PE L Sbjct: 8 LINYIKARKNVSFIELANYLKINRKDNKE-FSAYLVSLIKRNKIFKTFDSNYYVPELLRK 66 Query: 85 VKGTVIG-HRDGYGFLRVEGR---KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE-- 138 G + + + FL E K+ +++ + + + ++ D+V+A + Sbjct: 67 QSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIASIYKDHNEKNPTRQ 126 Query: 139 --ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDD---SRLSFDILIPPDQIMGARMGFVVV 193 A + ++ +I+G + F P D ++ F++L + ++ V+ Sbjct: 127 LLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCFDKVKFELL---NLSSKVKINDCVL 183 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 E+ + +I +V+ + + V L + I + + + +EV Sbjct: 184 CEIKKYDKNLVSL--EIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAESKLIPQEVD 241 Query: 254 E--EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + K R +L +VTIDGE +DFDDA+ +K G + L V IADV++YV+ T Sbjct: 242 LNIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADVAHYVKEKTN 301 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EA RGTS+Y + VIPMLP LSNG+CS+NP VDR + C++ + G YK Y Sbjct: 302 LDSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQHGNNVNYKIY 361 Query: 372 EAVMSSHARLTYTKVWHILQGDQ---DLREQYAPLVKHLEEL----HNLYKVLDKAREER 424 ++V++S RLTY +V D L ++ + VK LE + + L +L K +E + Sbjct: 362 KSVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELSLILHKYKEAQ 421 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + FE E K N + ++ I+ +R + LIE+ M+ N A+++ K P L+R Sbjct: 422 GYVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYLSDLKMPVLYR 481 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEP--RDYAELLESVADRPDAEMLQTMLLRS 542 IH+ PS E + S ++ L LG+ + N D+++ + ++ + + + LR+ Sbjct: 482 IHENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRNDYFINLLFLRT 541 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M++AIY N GHFGLA + Y HFTSPIRRYPDL +HR + L + + Sbjct: 542 MQKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHLEGKSSQE-------IL 594 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 ++ ++ Q S +E++A E R V D +F+ Q G FK I SV FG FV Sbjct: 595 NHFDSKLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTGQKFKAQIVSVLNFGIFVE 654 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + GL+H S+ + Y +++ E+ ++Y++G+ V+V + A ++ E KID Sbjct: 655 F-EFGGSGLIHKSNFFDGSYEANEMLTVFASET--KSYKIGEYVDVVIIATDLLEGKIDC 711 Query: 723 SLISSERAPRNVGKTAREKAKKGD 746 L S A + EK + Sbjct: 712 VLESQYDAYKLNLTRKHEKPRNSK 735 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 217/710 (30%), Positives = 363/710 (51%), Gaps = 26/710 (3%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E I+++L ++ K +L + + ++ + + L +E + +L++ L + Sbjct: 2 KEKIIQYLEEK-KECKIRDLEKIVRPKSSKEFTEMVKSLNELEDE-KLIYNDHTSLYLID 59 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 + + G+ + V + +Y+ + D+VL + + E Sbjct: 60 DIHFMAGSAKDISR--YEIAVFNENNKVYVPKNKKMKIFDKDEVLVRL-------KPEPS 110 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +++V + I G + F D L I + ++ + VV ++ + Sbjct: 111 LIKVFNHGLTNITGVMIVKKKKTFFYSDLD-LHCSIRVVNEKEFSFKKRTKVVCQIVKYA 169 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 +I++VLG G+ + L ++++ ++ + ++ + +V ++ R Sbjct: 170 ---DPLEVRIIQVLGHPDDAGVDISAMLTSNQVRQVFNGKIVKECKRIPAKVQKDELENR 226 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 D+R L VTIDG+DA+DFDDA+ K G + L+V IADVS+YV+ ++ LD+EA RG Sbjct: 227 KDIRGLLTVTIDGDDAKDFDDAISIVKNEKG-YVLYVHIADVSHYVKENSALDQEAYLRG 285 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 S+Y +V+PMLP LSNG+CSLNP VDRL + C M V KG L Y + +V+ S R Sbjct: 286 NSIYVCDRVVPMLPFDLSNGICSLNPNVDRLTITCAMQVDEKGNLLTYNIFPSVIHSDKR 345 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 TY KV L GD+ + ++Y+ + + L L +L K+L K RG I F ++EAK I + Sbjct: 346 CTYKKVNACLDGDKAILQEYSEVKELLFTLESLAKLLKKQSHNRGCIDFNTKEAKIIMDK 405 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + +R A ++IEECMILAN+ A + K P+++R+H+ P + + + +V Sbjct: 406 NGYPVDVNVLERGFAEQMIEECMILANVCVAHHMHVNKIPSMYRVHENPDPKKVATICTV 465 Query: 501 LAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 L + ++ + LES+ D E+L + LRSM++A YD GHFGLA Sbjct: 466 ANSLRIPFDFYPDEVNASQIQKFLESIQDENAYEVLSMVSLRSMQKARYDAHCLGHFGLA 525 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 L+ Y HFTSPIRRY DL +HR + KEQ + E +++ + H S Sbjct: 526 LEEYCHFTSPIRRYSDLVVHRMLHAYCFKEQKRTPSNDE--------KKIEKQAFHISEK 577 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER A R V D+ K +M +VG VF+G I V FGFFV +D+ ++GLV V +L N Sbjct: 578 ERDAIMMERMVNDYKKAQYMEKRVGQVFEGTIVGVMSFGFFVEMDNT-VEGLVPVHTLSN 636 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 D+Y +D+ L G++ G+ +++G RV V V ++ ++ FSL+ Sbjct: 637 DFYDYDEDTMTLKGQTHGKVFQMGMRVRVVCTDVQREKGQVTFSLLERRN 686 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 246/788 (31%), Positives = 385/788 (48%), Gaps = 37/788 (4%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 RE +++ L+ ++ +E+A L +E + L+R L + +G +V Q + + Sbjct: 19 REAVVDLLSSFKRALHANEIAERLGVE-PSRYAKLQRLLEELSLEGSIVALPGQRFRTSQ 77 Query: 81 RLDLV-----KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 + +GT+ H G+GF+ + G DD+Y+S E M +HGD V+ + R+G Sbjct: 78 KQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVRISTRSRRG 137 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI------MGARMG 189 E IVRV+ + +++ G ++ PDD R+ I+I P + A G Sbjct: 138 -VEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLVPPDAEDG 196 Query: 190 FVVVVELTQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 VV + + P G + VLG + V L I + Sbjct: 197 AAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEAIAEAEAF 256 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 EVP EA GR DL LP+ TID EDARD DDAV+ ++ G +R W+AIADVS+YVRP Sbjct: 257 GGEVPAEALEGRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIAIADVSHYVRP 316 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 + LD+ A RG SVY P + IPMLP LS+ LCSL P V RLC+ E+ + + + Sbjct: 317 GSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVELDATAAVRRA 376 Query: 369 KFYEAVMSSHARLTYTKVWHIL--QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 + E + S A+LTY V L + + L L+ + +L ++L R RG Sbjct: 377 RVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVMWDLARLLRGRRMRRGA 436 Query: 427 ISFESEEAKFIFNAE-RRIERIEQTQRND----AHKLIEECMILANISAARFVEKAKEPA 481 + + EAK + + + +++ + A++LIEE M+LAN + A+FV P Sbjct: 437 LDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLLANETCAQFVVDQGIPT 496 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +FR H P + F ++ ELGL + +P+ + L+ + P ++L +LLR Sbjct: 497 VFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHPQKQVLHMLLLR 556 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 +MKQA+YD N GHFGLA +Y HFTSPIRRYPD+T HRAI+ +L E+ + Sbjct: 557 AMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVLRGERVDRS------- 609 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + E + + S ER+A E R+V D + M ++G+ F+G ++ + G G +V Sbjct: 610 -EAATERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGDTFEGTVTGIVGGGVYV 668 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 ++D F+D LV + SL D Y D G R++G SG +GD + V++E V + R + Sbjct: 669 NIEDPFVDVLVRMESLGPDQYEIDDEGLRVIGRRSGDRIAIGDAMLVQIEDVAILRRAV- 727 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 R G+ ++ K + R + + +G K +K Sbjct: 728 -------YGRRLAGEPTADEPKPRRLRRDAADARPPRRVKISKSTKPLKGMKTSKRTQGG 780 Query: 782 KDARKAKK 789 K A+ KK Sbjct: 781 KSAKVRKK 788 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 204/746 (27%), Positives = 359/746 (48%), Gaps = 32/746 (4%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQC-YALPE 80 E ++ + K + + L +L+I + L L + + F +R Y Sbjct: 4 ETVVINTIKENPHINTNTLLRKLNISPRHS-KILTNMLINLSSRDLIAFDKRDSSYVALR 62 Query: 81 RLDLVKGTVIGHRDGYG-FLRVE-----GRKDDLYLSSEQMKTCIHGDQVLAQPLGA--D 132 +++ ++G + +G F+ VE G K ++SS T ++ D V A Sbjct: 63 KINTIQGPIHFASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVEADVFEPISP 122 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 R A++ +++ + ++G G P + + AR+ VV Sbjct: 123 DNNRTFAKVKKIIERRCKTLIGVLDNVNGFVTFKPIEPIYKNTSFRIKNIASEARVLDVV 182 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG-LKEE 251 V E+ R + I++ + D V +P +P V + + + E Sbjct: 183 VAEIINYENRNKEIN--IIKRITDVNDPMAYVKSLEEARNVPREFPAEVNEYIQKFIPEN 240 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + E + R DLR+ +VTIDG +DFDDA+ K + L V IADV+YYV+ +TP Sbjct: 241 IKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKENTP 300 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EA RGTS+Y ++V+PMLP LSNG+CSLNP +RL + C ++ G+ K Sbjct: 301 LDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKLGQSIETKIV 360 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +V+ S RLTY +V + +D ++ L K L+ + L +++ + + ++G I FE Sbjct: 361 PSVIKSKYRLTYERVNEFINESKDFEDK--ELNKMLKNAYELSQIIREFKNKQGYIDFEI 418 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 +E +++ R+ I + ++ K+IE+ M+ AN A+F+ +K P ++RIH+ PS Sbjct: 419 QEPHIELDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFITNSKLPMMYRIHEVPSE 478 Query: 492 EAITSFRSVLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 E I F VL L + + K P + +++ + + + E L+ + LR+M++A+Y P Sbjct: 479 EKIEYFLEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDEFLKMLFLRTMQKAVYSP 538 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 +N GHFGLA + Y HFTSPIRRYPD+ +HR + + K+Q ++ + + Sbjct: 539 DNIGHFGLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNKVDEF--------AANLQ 590 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 ++ S +E A + RDV D ++ ++ + F+G + +T FG F++ D+ D Sbjct: 591 KIAAMNSASEENAVQLERDVNDLKFAEYFKSKINSEFEGQVFGITKFGMFIQFDN-KTDA 649 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGE-SSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 +VH+S++ + + ++ +L + + Y+LG V V + + KID L + Sbjct: 650 MVHISNIGDGDFEANEQMTKLYSKNDPKKAYKLGQTVRVVITNADETTGKIDCVLAQDYK 709 Query: 730 APRNVGKTAREKAKKGDAGKKGGKRR 755 R K K +KG +R Sbjct: 710 T------YLRNKVSKNFNQQKGFNKR 729 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 201/756 (26%), Positives = 352/756 (46%), Gaps = 52/756 (6%) Query: 21 REFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ ILE+ K S +E+ + E+ L L + +G L R+ Y L Sbjct: 7 KQAILEYFQKYPHTGLSYNEIVNTFQLNKAEK-ALLSGILSGLMEEGILTKDRK-KYHLQ 64 Query: 80 E-----------RLDLVKGTVIGHR--DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 + L++G G+ + + + D Y+ +E + H D V Sbjct: 65 KMPKAKQPSPTPNPKLLQGIFDATPLSRGFSYAFIRTPEKDYYVDAEDILNAFHNDIVAF 124 Query: 127 QPLGADRKGRREARIVR-VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG 185 +P RKG +++ I+R V+ T Q VG G + + ++ + Sbjct: 125 EP--KYRKGHQDSAIIRKVVKRSTEQFVGELIRRNGFSTFICSNPKVFRWFFV--SDPAQ 180 Query: 186 ARMGFVVVVELTQR--PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 G VV+++T P VGK++E+LG + + + +R + +P +P+ V Sbjct: 181 GENGDKVVLKVTNWGNPQMGKVPVGKVIEILGKSGEPEVELLAVIRQYNLPLEFPEDVIA 240 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + L E+ E R DLR+L TID A+DFDDA+ EK G WRL+V IADV+ Sbjct: 241 EANLLSAEIKPEDYRNRRDLRNLYSFTIDPITAKDFDDAIAVEKTSKG-WRLYVHIADVA 299 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +Y+ + +EA RG S YFP +VIPMLPE LSN +CSL P+ ++LC+ + KG Sbjct: 300 HYLSVEGAIFQEASKRGNSFYFPKRVIPMLPERLSNLICSLRPEEEKLCLTVQTDFDRKG 359 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 ++ + YE+V+ S +RL Y +V + G + + PL L E L ++L + R Sbjct: 360 QIIEQQIYESVICSQSRLNYDEVDELFAGKKT--DIPIPLQDILLEARALSRLLTEKRMN 417 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 G I F+ E ++ ++ ++ + + ++HK+IE M++AN A + + ++ Sbjct: 418 AGYIFFDLPEIEYEYDENGFLKCLTLAEETESHKIIENFMLVANEFVATRLSQTAPATIY 477 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 RIH+ P + +L+ G++ + LL S + ++ +LLRSM Sbjct: 478 RIHNDPDFNKLERLIELLSYYGVKWVMYENLN-KSIQYLLNSFPNEAYHKVFDRILLRSM 536 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 K+A Y E+ HF LA+++Y HFTSPIRR DL +H K L T Sbjct: 537 KKARYSTEHIHHFALAMENYTHFTSPIRRLCDLVVHYLCKTWLCH----------TSNQK 586 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 ++ ++ + S E +AD++ RD+ M ++ G +++G++ SV G V+L Sbjct: 587 FTPSQLKHFAEVASEQEIQADQSERDIEMVYSLALMREKEGELYEGMVISVNSRGLIVQL 646 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV---------- 713 +++ + G++ SL + + + R + + + Y+L D + V + V Sbjct: 647 EEIPVTGVIKEISLGEGNWEYLEREMRYINRRTHKYYQLMDTLTVIIGYVEDDIYLFPIP 706 Query: 714 -----NMDERKIDFSLISSERAPRNVGKTAREKAKK 744 N+ + K S S+ + P+ G+T +K+ Sbjct: 707 ETLRHNVSKTKSSLSHKSASQKPKPSGRTGSPSSKR 742 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 215/664 (32%), Positives = 324/664 (48%), Gaps = 39/664 (5%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--------RR 137 +G + GY F++ + ++ + ++ GD V L + +G R Sbjct: 7 RGVLNMTSAGYAFVQTAEGE--FFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAGPDRP 64 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 AR+VRV++ IVGRY G VVP+D R+ DI + G +V V +T Sbjct: 65 AARVVRVVLRAHESIVGRYEVAEPFGIVVPEDPRIKHDIFTLRADAPHVQHGDIVRVRMT 124 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 P RR A G + EVLG GM V++ + H++ + V + VA E Sbjct: 125 VYPNRREPAQGVVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVAHAAVGEAEALS 184 Query: 258 AG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 +G D+R+ + TID DA+DFDDA+ +K GG RL V IADVS+YV ++P D EA Sbjct: 185 SGDYRDIRNRVVFTIDPADAKDFDDALSFDKV-GGYLRLGVHIADVSHYVPWNSPTDLEA 243 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 R R TSVY +V+PMLPEVLSN +CSL P+ R M ++ ++ + Y +++ Sbjct: 244 RRRSTSVYLVDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETFSVHHVDAYPSIIE 303 Query: 377 SHARLTYTKVWHILQGD------------QDLREQYAPLVKHLEELHNLYKVLDKAREER 424 S ARL Y V QD+ + ++ L L + L + R +R Sbjct: 304 SCARLDYDTVQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGLKRVSVGLHERRLKR 363 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 GG+ F+ EAK + E R ++ + A L+EE MI AN + AR + P+++R Sbjct: 364 GGLDFDGVEAKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAVARLLRDGAIPSIYR 423 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNK----PEPRDYAELLESVADRPDAEMLQTMLL 540 +H+ P+T +++ +L E G + +P +++ R + ++ T+++ Sbjct: 424 VHEPPATGDLSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKAKGRLEEPLVSTLVV 483 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R+M QA Y HFGL ++Y HFTSPIRRYPDL +HR +K L T Sbjct: 484 RAMTQARYVDACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKLFGR---------TE 534 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + H S ER+A+ A R+ + + + + +G F G++S VT GFF Sbjct: 535 TTSAEEAALATIAAHASEMERKAETAARESQELKLFELLEEHIGEEFDGLVSGVTASGFF 594 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDD +G V + +Y+ D L G SG YRLG RV +RV V ERK Sbjct: 595 VRLDDT-SEGFVSLRRA-QEYFILDPERYTLTGSDSGVVYRLGARVRIRVRDVYPFERKA 652 Query: 721 DFSL 724 DF L Sbjct: 653 DFDL 656 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 262/763 (34%), Positives = 368/763 (48%), Gaps = 57/763 (7%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 RE + +T+ + E+A ++ G E LR LR + +G LV + + Sbjct: 39 REALRRFVTEASGRVGKREIARAFNL-GPEHKAALRAMLRELALEGTLVPAGARRFRASA 97 Query: 81 RLDL-----VKGTVIGHRDGYGFLRV-----EGRKDDLYLSSEQMKT-CI-HGDQVLAQP 128 + V GT DG R +G +++ EQ + G++V+A+ Sbjct: 98 AMPEAALVQVTGT---DPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVAR- 153 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYF---------------TEAGVGFVVPDDSRLS 173 L GR E R +R L +IVG + A G +VP D R Sbjct: 154 LKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRAK 213 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 + +IP + MGA VVV E K +IV LG +A+ TH I Sbjct: 214 AEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKP-ARIVARLGPMGDARSVSLLAIHTHSI 272 Query: 234 PYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 P +P + + PE GR DLRD+PL+TIDGEDARDFDDAVY E G + Sbjct: 273 PDQFPAEALSEAERARGVSPE----GREDLRDVPLITIDGEDARDFDDAVYAEPDGDG-F 327 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 RL VAIADV++YVRP + LDREAR RG SVYFP +V+PMLPE LSNG CSL P DR C+ Sbjct: 328 RLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGCL 387 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNL 413 E+ + + G T ++F +M S ARLTY + I+ ++ +++ + L Sbjct: 388 FAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFTA 447 Query: 414 YKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473 ++ L AR RG + + E + RI IE R+D+H+LIEE M+LAN++AA Sbjct: 448 WRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAEE 507 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVAD----- 528 +E+ + P L+RIH PS E + R L+ +G +LP RD +L A Sbjct: 508 LERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEASG 567 Query: 529 -----RPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 ++ +LR+ QA Y P+N GHFGLAL +YAHFTSPIRRY DL +HRA+ Sbjct: 568 PASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRAL- 626 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 G G + ++G+ S AERRA A R+ + ++ D+V Sbjct: 627 -------IGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADRV 679 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F G +S VT FG FV L GLV VS+L +D + D+ Q L G G RLG Sbjct: 680 GAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRLG 739 Query: 704 DRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGD 746 V VR+ + F+L+ + A G R + + Sbjct: 740 QPVTVRLVEATPVTGGLLFALVGANPAAA-SGPARRARGTRPR 781 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 262/796 (32%), Positives = 373/796 (46%), Gaps = 86/796 (10%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY-- 76 PSRE I + + + E+A + ++L LR L+ M +G L + + Sbjct: 45 PSREAIRRFVAEASGRVGKREIAKAFGLGAADKL-HLRDLLKDMASEGNLAPAGHKRFMP 103 Query: 77 -------------ALPERLD-LVKGTVIGHRDGYGFLRV------EGRKDDLYLSSEQMK 116 LPE L+ GT RDG R G + + E Sbjct: 104 AGGSMLPHAKGSSHLPEVAVILITGT---DRDGDAVGRPAEWPREAGPPPSVLMHPEPRG 160 Query: 117 T-CI-HGDQVLAQPLGADRKGRREARIVRVLVPKTSQ-IVGRYFTEAGV----------- 162 + G++VLA+ GR E R ++ L T + I+G Y V Sbjct: 161 RPALAPGEKVLARLRPIGH-GRYEGRTIKRLGGDTPRPILGVYRLSEPVTLVPRSTRTSH 219 Query: 163 -----------------GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK 205 G VVP D R + L+P + GA G +V K Sbjct: 220 AARQMLARQNASTAQPEGRVVPTDRRSKAEWLVPAGEEGGAEPGDIVRAMPLPHTGYGLK 279 Query: 206 AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRD 265 +I+E LG I + TH+IP I+P + + E+ R DLRD Sbjct: 280 P-ARIIEKLGKIGDARSVSLICIETHDIPQIFPDEALSEARKARAVPLEK----REDLRD 334 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 +PL+TIDGEDARDFDDAV+ E+ G+RL VAIADV++YVRP + LDREA RG S YF Sbjct: 335 IPLITIDGEDARDFDDAVFAERAENDGFRLIVAIADVAHYVRPGSALDREAFKRGNSCYF 394 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 P +V+PMLPE LSNG CSL P DR C+ EM +++ G ++F +M S AR TY + Sbjct: 395 PDRVVPMLPEALSNGWCSLRPDEDRGCLFVEMMINAGGGKIRHRFGRGLMRSTARRTYEE 454 Query: 386 VWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE 445 V + + L+ L+ Y L KAR RG + + E K I N ++ Sbjct: 455 VQQAHEAGDET----------LDALYGAYHALIKARTARGTLDLDLPERKVILNEAGSVD 504 Query: 446 RIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG 505 I R D+H+LIEE M+LAN++AA +E+ P ++R+H PS E + R L G Sbjct: 505 AIIPRPRLDSHRLIEEFMVLANVAAAEELERLHRPCMYRVHAPPSDEKTEALRGFLDSFG 564 Query: 506 LELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAH 565 + LP + PRD +L+ VA A ++ +LRS QA Y+P+N GHFGLAL YAH Sbjct: 565 ISLPPAGQIHPRDLDHILKQVAGTEHAALINETMLRSQSQAEYNPDNIGHFGLALSRYAH 624 Query: 566 FTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADE 625 FTSPIRRY DL +HRA+ L G + + + +H + ERRA Sbjct: 625 FTSPIRRYADLLVHRALIAGLKLGVGSLEDDE--------ASRFVDIAEHITATERRAAM 676 Query: 626 ATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFD 685 A RD D FM D+VG F IS VT FG F+ +++ G+V +SSL +D++ D Sbjct: 677 AERDAIDRYLAAFMADRVGARFAARISGVTRFGLFITVEENGASGIVPISSLPDDFWIHD 736 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS-----SERAPRNVGKTARE 740 + Q L+G +S +RL V VR+ + F+L+ + P + +T + Sbjct: 737 EREQALIGRNSRAVWRLAQSVTVRLAEATPITGGLVFNLLPGASSSASSRPDSTDRTNTQ 796 Query: 741 KAKKGDAGKKGGKRRQ 756 G+ R+ Sbjct: 797 DRFSSRKRGSPGRSRR 812 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 251/774 (32%), Positives = 374/774 (48%), Gaps = 40/774 (5%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 +A K +P RE ++ L + A++ ++A ++G ++ LR LR +E G L Sbjct: 20 KAPKPPAGLPDRETLIAFLRDAGE-AAKADIARHFGLKGADRR-ALREMLRELEAQGALG 77 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYG--FLRVEGRKDDLYL--------SSEQMKTCI 119 R+ +A L V + RD G ++R+ +DL + + Sbjct: 78 KRGRRGFAEAGALPPVGVADVVERDADGDLYVRLTKGGEDLPMVRLVPGKGDAAAGGAPG 137 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD++L + G EAR+++ L +++G V P D + +L+ Sbjct: 138 MGDRLLVR-FEQLESGETEARLIKRLGQSAHKVLGVIRKVRRETRVEPVDRKSKESLLLN 196 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 + + G +V+ ++ R GK++EV+G+ A IA+ +H IP + + Sbjct: 197 EQEAKDLKDGDLVLAQVGTSSGRYGPKFGKVLEVVGNEDDPRAASLIAIHSHGIPTGFSE 256 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRL 295 GR DLRDLP VTID DARD DDAVY GGW + Sbjct: 257 D----AEAEAHAAKPPTLEGRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNVGGWIV 312 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 WVAIADV+ YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL +R + Sbjct: 313 WVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLREGENRATLAV 372 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-----DQDLREQYAPLVKHLEEL 410 M + GR +KF +M S A+L+Y + + G QD + L L L Sbjct: 373 RMVFDNDGRKKSHKFVRGLMRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLLDPILRPL 432 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 ++++ K R +R + ES+E + I + I+ I + +AHKLIEE MI AN+ A Sbjct: 433 WAAFRLMGKGRAQRSPLGIESDERRIII-KDGEIQSITRRASLEAHKLIEEMMIQANVCA 491 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 A +E + P ++R+HD PS E + S L + ++ G P + +LL+ + P Sbjct: 492 AESLEAKRTPLIYRVHDTPSQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLLDDTRESP 551 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 A ++ ++LR+ QA Y +N GHFGL L YAHFTSPIRRY DL +HRA+ L Sbjct: 552 HAAIINEVVLRTQMQAHYSSDNLGHFGLNLARYAHFTSPIRRYADLIVHRALIRAL---- 607 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 + G + ++ + + AERRA A RD D F+ D+VG F G Sbjct: 608 ----KLGDDGLTDQDISQIKDTAEVITHAERRAMAAERDATDRYIAAFLSDRVGATFSGR 663 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV 710 I+ VT FG FV+LD+ DGLV VS+L +Y+ D L+GE +G+ + LG VEV++ Sbjct: 664 ITGVTRFGLFVKLDETGADGLVPVSTLGEEYFVHDDRMHALVGERTGKRFPLGLAVEVKL 723 Query: 711 EAVNMDERKIDFS-----LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 + F L + +APR A K G G RR + Sbjct: 724 REATPVTGGLLFEMLTEALPNDPKAPRPRLGVRARPAVKPRGGLPKGVRRGKRR 777 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 195/662 (29%), Positives = 321/662 (48%), Gaps = 32/662 (4%) Query: 86 KGTVIGHRDGYGFLRVEGRKD---DLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 KG H G+GF+ E D D+Y+ K + GD+V + + R +I Sbjct: 17 KGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMDGDKVTVKVTYPKTEKRGASGQI 76 Query: 142 VRVLVPKTSQIVGRYFTEAGV--------GFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 ++ VG Y + + G + + R+S + I + G + VV Sbjct: 77 TKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDRISDTLYI-KQPLSGVQEEDVVS 135 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +++TQ PT GKI ++G G+ + L +IP + + E++ Sbjct: 136 LKITQYPTNTKTFEGKITGIIGHKGEVGLDILEVLCAMKIPQEFSSETLAEAEAFSEKLT 195 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + R D R+ TIDG+D++D DDA++ +K + L V IADVS+YV + LD Sbjct: 196 DSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYVTEGSSLD 255 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +R TSVY +V+PMLP LSN LCSLN +RL M C M + KG++ YK + Sbjct: 256 EEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLTMSCLMEIDDKGKIVSYKISPS 315 Query: 374 VMSSHARLTYTKVWHIL----QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 V+ + R+TY V ++ +G ++ E + + ++ L+++L+ R++RG I F Sbjct: 316 VIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIKVAVELHEILETMRKDRGMIEF 375 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + EAK I + + I + R+ A ++IE M++AN + A +K K P+L+R+HD P Sbjct: 376 DESEAKIILDEKGHPIEIVKRDRDTAERMIESFMLMANETVALDFQKKKLPSLYRVHDNP 435 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 ++ A G L + +A + + + L L +M A+Y Sbjct: 436 KEKSFAKLMEAAANAGFSLNSDSHQAINFFA---DEIKGTSSEKALTYQLRHTMSTAVYS 492 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 +N HFGLA +Y HFTSPIRRYPDL +HR + + H + + E + Sbjct: 493 EKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNHTKDEWK--------ERL 544 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 ++ H S E RA R + K ++M +++G V+ G I+ + FG FV LD+ ++ Sbjct: 545 PEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIGEVYTGTITGLQKFGIFVALDNT-VE 603 Query: 670 GLVHVSSL---DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 GL+ V +L + FD+ G+ S Y++G +++RV A N + +DF I+ Sbjct: 604 GLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQIGQEIKIRVIAANKRKGTVDFEQIA 663 Query: 727 SE 728 E Sbjct: 664 PE 665 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 255/769 (33%), Positives = 371/769 (48%), Gaps = 86/769 (11%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +PSRE IL + + AS+ ELA ++G+ ++E L+ L+ +E++G L +R+ Sbjct: 39 LPSREVILRFIADHPQKASKRELAKAFGLKGDSRVE-LKHLLQELEQEGMLQKSRKSLI- 96 Query: 78 LPERLDLVKGTVIGHRDGYGFL--RVEGRKDD------LYLSSEQMKT---------CIH 120 P L V I RD G L R +D + + + Sbjct: 97 RPGALPPVTVLDITTRDKDGDLIGRPAEWPEDQGVAPAVAIRQQSPAGRQGKGKAPVAGL 156 Query: 121 GDQVLAQPLGADRKGRR--EARIVRVLVPKTSQIVGRYFTE-AGVGFVVPDDSRLSFDIL 177 GD++LA+ A +G ARI++V+ + +G + T G G ++P + R D++ Sbjct: 157 GDRILAKIFPAVDRGGPAYTARIIKVIDRRRGAAMGVFRTAPGGGGRLLPIERR-GEDMV 215 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 I PD GA IP+++ Sbjct: 216 IDPDFTGGA--------------------------------------------DGIPHVF 231 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGW 293 P AV + K + R D RD+PL+TID DA+D DDAVY E GG Sbjct: 232 PPAVMAEAEAAK----PATMSHREDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPGGV 287 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 + VAIADVS+YVRP++PLDREA RG SVYFP +V+PMLPE +SN LCSL +DR + Sbjct: 288 IVTVAIADVSWYVRPNSPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRPAL 347 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNL 413 M+ SS+GR G+ F+ +M S A+L+Y + + G+ D + L L+ L Sbjct: 348 AVRMSFSSEGRKIGHTFHRIMMKSAAKLSYQQAQAAIDGNADDK-TGPMLEPILKPLWRA 406 Query: 414 YKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473 Y V+ + R+ R + + E K + + ++R+ R DAHKLIEE MI AN++AA Sbjct: 407 YAVMKRGRDRRQPLELDMPERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAAAET 466 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAE 533 +EK ++ ++RIHD P+ R LA LG+ L G + +L Sbjct: 467 LEKKRQVLVYRIHDGPTLAKQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTAHQT 526 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 M+ M+LRS QAIY PEN GHFGL L YAHFTSPIRRY DL +HRA+ L +G Sbjct: 527 MVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGEGGI 586 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 E + + S ERRA A R+ D L + +VG F G +S Sbjct: 587 TPDEEAA--------LDDIAAEISTFERRAMAAERETIDRLIAHHLSTRVGEEFAGRVSG 638 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 VT G F+ L D DG + +S+L +DY+ +D+ Q L GE +G YRLGD V V++ Sbjct: 639 VTKSGLFIALPDYGADGFIPISTLGSDYFIYDEAHQALSGERTGLGYRLGDSVTVKLAEA 698 Query: 714 NMDERKIDFSLISSERAPRNVGKTAREKAK--KGDAGKKGGKRRQVGKK 760 + F ++S R ++ + + KG KK G R G++ Sbjct: 699 IPLAGALRFEMLSEGREMPTAVRSFHKAGRRDKGQVRKKPGTRPPRGRR 747 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 223/769 (28%), Positives = 366/769 (47%), Gaps = 52/769 (6%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ ++ H+ +P S+ ELA L+++ ++L+ R + ME +G+LV ++ YAL Sbjct: 6 KDRLIRHMEDGHYEPQSKSELARALNVDSRQKLD-FRALVDQMEEEGKLVRLQKGRYALK 64 Query: 80 -ERLDLVKGTVIGHRDG-YGFLRVEGRK------------DDLYLSSEQMKTCIHGDQVL 125 ER +LV G + R G FL +G +L L + T + GD+V Sbjct: 65 RERRNLVHGMIRILRSGKILFLPRKGDPAAAALGWDTEAVPELELKPNHLGTALDGDRVA 124 Query: 126 AQP--------------LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGV-GFVVPDDS 170 + + +AR+ V S+ +G + T G V+ D Sbjct: 125 VRVERKAARGRRNIRRNRFSSPDADMKARVEEVTERARSRWLGVFRTGKNKPGRVLGDGV 184 Query: 171 RLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 I + M G +V VE + GKIVEVLG + ++ +R Sbjct: 185 SSPSSIELAEKPAMEVLPGQLVSVEPITCGEEKKAPRGKIVEVLGYPDEPHVDMEAVIRK 244 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 + + +P +V +++ L + A R D D ++TID ARDFDDA+ Sbjct: 245 YGLSVEFPASVLRELETLPQTPSPGELARREDWTDRTVITIDPASARDFDDAISITATPS 304 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 G W L V IADVS++V+P LD EA RG S Y P +V+PMLP LS+ LCSL P V R Sbjct: 305 G-WTLAVHIADVSHFVKPGGSLDGEALRRGNSTYLPDRVLPMLPHRLSDDLCSLRPDVVR 363 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 L VCEM KG++ +F +A + S ARLTY + + +L+G+ + + E Sbjct: 364 LTKVCEMKFDKKGKMLRARFADAFIRSKARLTYQEAFAMLKGNDK-----GEVPSTVREA 418 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 NL +L + R +G + + E + + + + R+ I + +++H+LIEECM+ AN + Sbjct: 419 WNLASILRRNRYAKGALDLDFPEVRAVMDKDGRVTGIITEEYDESHQLIEECMLAANEAV 478 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 A ++ P ++R+H++P + + F + G P + + + EL++S+ P Sbjct: 479 ALALKNGNRPTIYRVHEEPDSAKLFEFGQLCRLYGH--PVHDIDQRQYLNELMKSIKGSP 536 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 D ++L+ LL+S+ +A YD E GH+GLA +Y HFTSPIRRY DL +HR++ LLA Sbjct: 537 DEQLLKLALLKSLMRARYDTEPLGHYGLATPNYCHFTSPIRRYADLVVHRSLNPLLANPP 596 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV----GNV 646 TG + + +H S ER + A +D +++ Q V Sbjct: 597 KGAKGAGSTG-------RLEEDAEHISETERISASAEKDANRMKLFEWLEGQCYADHPEV 649 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 + +++ FG + + L I GLV L + ++ R + G G RV Sbjct: 650 HEALVTETRHFGVLLEIPRLQIKGLVKPDKLPGGRWVYEAFASRWKNDH-GSVLCAGLRV 708 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRR 755 V V+ +++ DF+++S E+ PR GKTA ++ +G + R Sbjct: 709 PVIPVKVDREQQWADFAIVSREK-PRQTGKTAFPTKQEKGISGRGRRNR 756 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 234/775 (30%), Positives = 369/775 (47%), Gaps = 51/775 (6%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 +LE L + +++ E+A L ++G +++ LR+ L+ +E +G + T ++ ++ + Sbjct: 9 VLEFLERNPDKSNKREIARGLGVQGSDRV-ALRQILKKLETEGTIARTGKRQFSSVDAPP 67 Query: 84 L--------------VKGTVIGHRDGYG----FLRVEGRKDDLYLSSEQMKTCIHGDQVL 125 + G +G YG + GRK E + GD+ L Sbjct: 68 PTSIIKFEKLDEHGDLVGRCVGRDGLYGPEITCVATGGRKK-----GESLGI---GDKAL 119 Query: 126 AQPLGADRKGRREARIVRVLVPKTS-QIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 + A+ A++++ + T+ ++G + G V P + + L+ Sbjct: 120 CKVGKAN-DSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVEKILSK 178 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A G +V + L + + ++VE++G A IAL TH++P +P + + Sbjct: 179 DAETGDIVRISLKK-SKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEFPVEIIAE 237 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKR----GGGWRLWVAIA 300 + K R DL D+PL+TID DARD DDAV+ GGW ++VAIA Sbjct: 238 AENATAQ-----KTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIVYVAIA 292 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV+ YV+ T LD EA RG S YFP +V PMLPE LS CSL R EM S Sbjct: 293 DVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAVEMRFS 352 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + G G++F M S A+L+Y + + G D + L L+ L Y+ + KA Sbjct: 353 ANGNKIGHRFIRGTMRSAAKLSYEQAQAAIDGKPDDK-AGPLLETVLKPLWAAYECVGKA 411 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R R + + E + + + + + R DAHKLIEE MI AN+ AA +EKA P Sbjct: 412 RTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESLEKANSP 471 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ++R+HD+PS E I + L +G++ G K + +LL ++ M+L Sbjct: 472 LIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHLVSEMVL 531 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS QA Y PEN GHFGL L YAHFTSPIRRY DL +HRA+ L+ G Sbjct: 532 RSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVHRALIRALSLGPD--------G 583 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + ++ +H + ERR+ A RD D FM ++VG F+G I+ VT G F Sbjct: 584 LSDVESKRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAEFQGRIAGVTKAGMF 643 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V+LDD DG + + L ++Y+ +D+ L+ E S + Y +G V V++E + Sbjct: 644 VKLDDSGADGFIPAARLSDEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEATPLTGGL 703 Query: 721 DFSLISSERAPR-NVGKTAREKAKKGDAGK--KGGKRRQVGKKVNFEPDSAFRGE 772 F ++S R R ++ K RE+ + + KG K+R + + + + Sbjct: 704 LFEMLSEPREAREDLVKPKRERRGRNHPPRGNKGSKKRPSNRSARSNGSRSGKKK 758 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 224/768 (29%), Positives = 364/768 (47%), Gaps = 48/768 (6%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 ++EFI ++ + EL E++ E ++L + + + + +R YAL Sbjct: 1 MNKEFIKWFYDQKSIQVTY-ELVKEVYKEKTDELLEAHKEYFDIIDNTHIQLKKR--YAL 57 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 G + + FL + D+ + + + D VLA +G + Sbjct: 58 --------GKITI-KRTIAFLMMPEGAKDIAIDLFDLNGAMESDIVLADIVGYNPY---- 104 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFD-------ILIPPDQIMGARMGFV 191 I ++ ++++ + D ++ FD ++I D G V Sbjct: 105 --IKEIIHSNLTKLIADVKIRS--------DKKMRFDANEAQNKLIIVKDVPDYLVDGHV 154 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V++++T+ RT+ K EV+G M + + +E P + + V ++ +K + Sbjct: 155 VLLDVTE--VTRTQIFTKFREVIGHKNDPDMEIVKIVYEYEWPLKFSKEVLNELHHIKID 212 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 E + R D+ D +VTIDG DA+D DDA+ E G ++L V IADVSY+V+ + Sbjct: 213 -HEYERKTRRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSY 271 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 L+ A NR TSVY +VIPM+P LSN LCSLNP D+ + CEM ++ + Y Y Sbjct: 272 LNEAAYNRATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVVNYDIY 331 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +++ S RLTY V + + Q + + K L ++ + + L + R +RG I F S Sbjct: 332 ASIIQSKHRLTYHDVNQLFKEHQ--STGFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNS 389 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E KF+ + + +E+ ++A LIE MILAN + +R P ++R+H+KP++ Sbjct: 390 TELKFVLDVNGDVLGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTS 449 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 E + A+LG + K + L + VA P ++ +LLRSM++AIY + Sbjct: 450 EKLDIAFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQKAIYSEK 509 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GHFGLA Y+HFTSPIRRYPDL LHR I+ L+ + Y + M Sbjct: 510 PIGHFGLASAYYSHFTSPIRRYPDLLLHRMIRDLMLNNPDAETLKKLKKHYR---DLMPS 566 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +H S ER+A R+V +M + F G I S+ GFFV+L++ I+GL Sbjct: 567 YSEHTSNQERQAVNMEREVNKLKSRQYMAQFINQSFDGQIVSMMPSGFFVKLEN-GIEGL 625 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 V+V +++ Y +D E G+ YRLGD++ V++ V+ E IDF++ A Sbjct: 626 VNVRNVNQ-YLIYDDEALLFYTER-GKRYRLGDKIRVKLIKVDEVENNIDFTIDPQNHAE 683 Query: 732 R-NVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPK 778 KT+ K K+ GK R+ K P S +G K + Sbjct: 684 DYKAHKTSTSKVKRKPNPADMGKSRKTKSKA---PKSGKKGFGPKKNR 728 >UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organisms RepID=Q6KI25_MYCMO Length = 708 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 212/708 (29%), Positives = 363/708 (51%), Gaps = 25/708 (3%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++E +L L + K S E+ ++ + + + L + + G++ R Y +P Sbjct: 3 NKEKVLSLLKE--KKYSFIEIVQKIEVPKFKN-KDFSNFLFDLVKSGEIFKDRDNNYYMP 59 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDD-LYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 + L GT+ + G+GF+ E K D +++S + +GD V + + ++ Sbjct: 60 KFLGEFNGTISINSKGFGFVDFEDDKKDSVFVSKFNLNGSFNGDLVSVKSYCESNEAEKQ 119 Query: 139 ---ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 I +++ T +VG F E G D + + + D + + ++ V Sbjct: 120 KCFGVISKIIKRNTQYLVGWSFLENGKMKFKAFDEKYNVTQFLFLDNVTNLKENTLIKVR 179 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP-- 253 + + + ++ +IV+ +G V + + +I + + + A + + + Sbjct: 180 IVEF--NKMSSIVQIVKTIGHLNNPYDEVALVIEESDIVTEFNENTLIESANIPQSISRE 237 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E R D R+ +VTIDG+D +DFDDA+ EK +G + L V IADVSYYV+ ++P+D Sbjct: 238 KEEINNRRDYREKLIVTIDGDDTKDFDDAILVEK-KGDNFILSVHIADVSYYVKENSPID 296 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +RGTS+Y +VIPMLPE LSNG+CSLNP VDR M EM + KGR + + + Sbjct: 297 LEALSRGTSIYLADRVIPMLPESLSNGICSLNPNVDRFTMGIEMEIDEKGRTIRSEIFPS 356 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +++S RLTY +V + + L + L L +L K + G + FE EE Sbjct: 357 IINSKKRLTYKEVNRFYNNEISF-DDVPNLNEMLNTSLELSNILQKFKIADGYVDFEIEE 415 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + R+ERI+ +R + LIE M+ AN A F+ K K P L+RIH+KP Sbjct: 416 PKVILDKDGRVERIDVRERGLSEVLIENFMVRANEEVATFLAKNKIPTLYRIHEKPDNLK 475 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I+ ++ L + + + +++ L + D+ ++ ++LRSM++A Y P N Sbjct: 476 ISKLNGIIKTLNINAFFQSGNDSLKFSKTLNKLKDQRFDNFIKILILRSMQKAKYSPNNV 535 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGL + Y HFTSPIRRYPDL HR I+ ++ K Q + ++ + ++G Sbjct: 536 GHFGLGSKFYLHFTSPIRRYPDLLTHRIIREIIFKNQKDKISSFNAI--------LKRIG 587 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 + S +E +A E R+V D K +F ++G F G++ S+ FGFFV ++ +D L+H Sbjct: 588 EMNSESENKAVELERNVIDIKKAEFYESKIGKNFVGIVVSILPFGFFVEFEN-KVDVLIH 646 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 ++ D Y+ ++ G +++ + +T +GD+V V + N RKID Sbjct: 647 KDNI-VDAYKINEEGTKIILKD--KTILIGDQVNVTIIGTNRLARKID 691 >UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam n=2 Tax=Synechococcus RepID=Q2JH83_SYNJB Length = 766 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 203/760 (26%), Positives = 348/760 (45%), Gaps = 48/760 (6%) Query: 17 PIPSREF--ILEHLTKR--EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 PIP +F I +H + ++ +D L L E E L L + R G L Sbjct: 2 PIPKMDFSRIFQHFLSQPPDQLTDKDTLLALLQSPDPEAPEMLEIALDGLVRAGFLERLG 61 Query: 73 RQ-CYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLG 130 Y LV G + G+ F + +D+Y+ + +GDQVLA+ Sbjct: 62 DPPRYRRKPDESLVVGRLRCSSKGFCFAIRDEPGVEDVYIHGSNLSGAWNGDQVLARVTK 121 Query: 131 -ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMG 189 +R+ E +V V+ S +VGR VVP D RL F++ + + G Sbjct: 122 DGNRRRSPEGEVVAVVERANSALVGRLKQTEQGFRVVPLDDRLLFELALTEGSPVELAEG 181 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLK 249 V VE+ + P G I ++LGD + D+ +++P +P V + A L Sbjct: 182 RVAYVEVNRYPLGDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQEFPAPVLEAAAALP 241 Query: 250 EEVPEEAKAGRVDLRDLPLVTIDGEDAR-----DFDDAVYCEKKRGGGWRLWVAIADVSY 304 +++ + GR DLRD +T++ D + + + AV +++ W L + IADV++ Sbjct: 242 KKLSRSDQKGRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWLLGIHIADVAH 301 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 ++ P PL++EA+ R +VY + V+P+ P + N L L PQ +RL +T+ +G Sbjct: 302 WLDPDHPLEQEAQQRTATVYLDTMVLPLFPPEVHNRLA-LLPQQERLAYSLLVTLDPEGV 360 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDL--REQYAPLVKHLEELHNLYKVLDKARE 422 + ++ Y +++ S A L+Y +V +L DL E+ L+ L+ L L ++L R Sbjct: 361 VQNFEIYPSLVQSRAHLSYGQVQALLATTADLGPDEEVPELMALLQNLLRLSQILRAKRH 420 Query: 423 ERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 + GG + + E + + R AH L+ E ++LAN + + P+ Sbjct: 421 QAGGFDLPLLDLLTPHSADESGYGPLLISDRLGAHALMTEILLLANQILGHHLRQLGIPS 480 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNK--PEPRDYAELLESVADRPD-----AEM 534 L R+ P+ EA+ SF + + L+L + D+ + + + Sbjct: 481 LARVQPAPAAEALQSFLRLANAMKLDLNLQDPAVVTLADWQRICARITAPDVLASGASPA 540 Query: 535 LQTMLLRSMKQAIYDPEN----RGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589 L +L ++ Y + GHFGL L + YA FT+P+RRY DL RA+ L+K Sbjct: 541 LVAQMLATLPPVEYRLQPLEEQLGHFGLGLKEPYATFTAPLRRYADLLNLRALHLALSKG 600 Query: 590 QGHQGNTTETGGYHYSMEEM----LQLGQHCSMAERRA----------------DEATRD 629 + + + ++T + Q+ E +A +A R+ Sbjct: 601 RERRSSRSKTVVDLHGPSGYGQIDWQVLPPKVQEEWQAFLQAQLPKIQEGYRIRQQAERE 660 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + + +FM +G VF G+I V +GFFV++D + +GLV VS+L ND+Y + Q Sbjct: 661 LMGLKRSEFMQKHLGEVFPGLIIGVQNYGFFVQVDPILAEGLVRVSTLKNDWYEYRSRQQ 720 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 L+G S + +RLGDRVEV+++ V+ ++ID ++I R Sbjct: 721 ALVGRKSRRQFRLGDRVEVQIKNVDYYRQQIDLAVIGEGR 760 >UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC1_9ACTN Length = 711 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 223/706 (31%), Positives = 327/706 (46%), Gaps = 53/706 (7%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 +R ER + G V H ++ E D + + + GD V Sbjct: 11 ARNKRGP-VRSERRPSLTGRVQLHEHS-AYVITENG--DYKVMGRGKREIMDGDTVAVSI 66 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ----IM 184 + RR A I V+ +VG Y T +G + P DSRL D I P+ + Sbjct: 67 KNSPHGERR-AVIEGVVERAAISVVGTYQTAGPLGVIEPLDSRLKADFFILPEDTSADRL 125 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 G G VV + PTR I +G + + V + + +P+A + Sbjct: 126 GVHPGDAVVARILTYPTRLESGAVTIERRIGGDDAPDLGVQYVMARYGYTDSYPEAALDE 185 Query: 245 VAGLKEEVPEEAKAG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 GL +V K R DLRD ++TID DARDFDDAV E+ GG+RL V IADVS Sbjct: 186 AEGLSLDVSAALKDPLRRDLRDRFVITIDPVDARDFDDAVSLERTPEGGYRLGVHIADVS 245 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV +D EAR+R TSVY +V+PMLPE LSN LCSL P DRL ++ + ++G Sbjct: 246 HYVAWDGHIDLEARHRTTSVYLADRVLPMLPERLSNDLCSLRPDEDRLAFTVDIELDAQG 305 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHIL--------------------------------- 390 R+ Y Y +V+ S R+ Y +L Sbjct: 306 RVRHYDPYPSVIRSRVRMDYDGAEALLVRAGAVEYSVLEGAAEDVAAAEASREEALERGL 365 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 ++ R L L + L ++ + R RG + F++ E + + + + +I Sbjct: 366 ACEEAARGYNVDLGDFLVAANELAELRRRIRRARGSVDFDTAEIRALLDEDGVPVQIVAR 425 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL---- 506 +R+ A LIEE M+LAN A ++ A +R+H+ PS +++ LA+LG+ Sbjct: 426 ERSCATSLIEEAMLLANECVAEWLADRDIEACYRVHEDPSPDSLHGAAVALAQLGIIDDR 485 Query: 507 ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 G P + +++ A +A ++ T+LLRSM++A+Y P N GHF LA Y HF Sbjct: 486 RAAGIALGSPDELQAAVDAAAGTANAPLVNTLLLRSMQRALYKPRNEGHFALAAPCYCHF 545 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQG------HQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 TSPIRRYPDL +HR +K LA EQ + G + Q+ + CS AE Sbjct: 546 TSPIRRYPDLVVHRVLKLQLAYEQLGGKDALVRTPRLIGKGRESLPRILPQICRACSDAE 605 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R AD A+ + D++G + G +S V+ G FVRLD ++GLV + SL N+ Sbjct: 606 RAADAASHATQKIKIAQYYEDRLGERYAGTVSWVSSMGLFVRLDLTQVEGLVSIKSLGNE 665 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ FD+ L G +G Y LG RV + V VN +DF LI Sbjct: 666 WFEFDEDALTLTGADTGTRYELGQRVIIEVSRVNTTRGHLDFKLIH 711 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 189/677 (27%), Positives = 318/677 (46%), Gaps = 51/677 (7%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK--------GRR 137 +G ++ R+G F+ + R+ L+ +HGD+V + + ++ GRR Sbjct: 7 RGVLVFRRNGNAFVEIRNRQKSFQLAKAATACALHGDEVEIRQVSPRKRKPGQRKATGRR 66 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 +V+V+ +G + + P+D RL + + + G V+V+ Sbjct: 67 SYEVVKVVSRSLDHFLGFAQRQGKGWMIRPEDRRLHTNFALSGEMPPNLVDGEKVLVQFV 126 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 ++ G+I+ VLG L +++P + + VE ++ + +V ++ Sbjct: 127 DWGQPQSLPRGRILRVLGPAGDPMTDHIGILAKYKLPNRFSRKVESELNTIPRQVRQQDL 186 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLRD +T+D DARDFDDA+ +GG + V IADVS YV P + +D+EAR Sbjct: 187 KGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPESAIDKEAR 246 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RG S Y +V+PMLP+ LSNG+CSL DRL T KG + G+ EAV+ S Sbjct: 247 RRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHHVTEAVIRS 306 Query: 378 HARLTYTKVWHILQGDQDLRE-------------------------QYAPLVKHLEELHN 412 RLTY + +L + DL + + L L L + Sbjct: 307 DKRLTYEQA-KLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQSTLRNLWS 365 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 L + R G + +E K + + ER+ + +++H+LIEE M+LAN + A+ Sbjct: 366 FADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLLANETVAK 425 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA 532 + + + PA+ R+HD P E + RS A G+ G+ + L + + P + Sbjct: 426 ELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFGISC--GDLNHRKAMTALTSKIKNHPIS 483 Query: 533 EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 ++L+ LLRS+++A Y GH+GLA Y HFTSPIRRY DL +HR I+ L + Sbjct: 484 QVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQLRGSRTT 543 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN----VFK 648 +S ++ ++ H S ER + +A R+ + ++ + Sbjct: 544 A----------HSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVRPHE 593 Query: 649 GVISSVTGFGFFVRLDDLFIDGLVHVSSLD-NDYYRFDQVGQRLMGESSGQTYRLGDRVE 707 +I+ + GFFV L D G V + +L ++ YR + + +T ++G R++ Sbjct: 594 AIITQIGRRGFFVELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTLKIGQRIK 653 Query: 708 VRVEAVNMDERKIDFSL 724 V ++ V+ DE+ +DF L Sbjct: 654 VMIDRVDQDEKLLDFRL 670 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 224/707 (31%), Positives = 323/707 (45%), Gaps = 68/707 (9%) Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD-------RKGRREARI 141 + GYGF++ + ++ MK+ GD V R R + R+ Sbjct: 2 LEVMPSGYGFVKTAEGE--FFIPESAMKSAFDGDVVAVSRASGGDGNRRARRTDRPQGRV 59 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 RV+ + IVGRY G VVP+D R+ DI AR G +V V +T P Sbjct: 60 ARVVTRAHASIVGRYEIAEPYGVVVPEDPRIRHDIFTLRRDASTAREGDIVRVRITAYPE 119 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK-AGR 260 A G I EV+G G+ VD+ + H + + Q A + + + G Sbjct: 120 AGQPAFGSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDEGY 179 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 DLR TID DARDFDDA+ ++ G R+ V IADVS YV +TPLD EAR R Sbjct: 180 RDLRHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEARARA 238 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY +V+PMLPE LSN +CSL P V R + ++ S L Y AV+ S AR Sbjct: 239 TSVYLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELVRVDAYPAVIESKAR 298 Query: 381 LTYTKVWHILQ-----GDQDLREQYAP--------------------------------- 402 Y V L+ G DL + P Sbjct: 299 FVYEDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVAGDDMH 358 Query: 403 ----LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKL 458 + LE LH + + L R GGI F+ EE K + + R ++ +RNDA L Sbjct: 359 GIRAIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRNDATSL 418 Query: 459 IEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE----LPGGNKP 514 +EE MI AN + AR + A ++R+H+ P + + +L E G + L Sbjct: 419 VEEAMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGYDDAVSLSAFAMG 478 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 P+ +L RP+ ++ ++LR+MKQA Y PE + HFGLA +Y HFTSPIRRYP Sbjct: 479 SPKAVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSPIRRYP 538 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL HR +K +L G + + H S E+ A+ A R+ + Sbjct: 539 DLMAHRLLKAVLRGRDGTTSAQ---------EAALPDIADHASRQEKVAETAARESQELK 589 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 + + + +G F G++S V+ GF+VR+ ++ +G V + L +++ D + L G Sbjct: 590 MYELLSEHIGEPFDGMVSGVSTSGFYVRI-EMGAEGFVPMRDL-GEFFHLDSARRMLSGV 647 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 SG RLGD V +RV AV R F+L S+ RA R+ + R + Sbjct: 648 ESGDVVRLGDAVRIRVVAVFPYARTATFALASNRRASRHSRASWRPR 694 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 254/804 (31%), Positives = 376/804 (46%), Gaps = 38/804 (4%) Query: 19 PSREFILEHLTKREKP----ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 PS IL +L KRE+ ++ +LA ++ + R L + +G++ R+ Sbjct: 5 PSDSDILSYLRKREEQGEEAPTQRDLADVFSVKNAGRR-QFRATLADLRDEGRIAVENRR 63 Query: 75 CYALPERLDLVKGTVIGHRDGYGFLRVE------GRKDDLYLSSEQMKTCIH----GDQV 124 L V + D G L E + L S Q GD+ Sbjct: 64 ILLKGGPLPPVVVLDVIDTDSDGDLICEVISAEAPAGTSVVLPSTQAGKVKPPIGTGDRF 123 Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 L + L A A ++ + ++ +G Y G V P SR + + I Sbjct: 124 LGR-LTALEDFHYHAAPIKRIGRGATRTLGVYRPHRRGGHVDPV-SRKAQSLDIDSRDAN 181 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A G +V E G+IV + G IAL +IP +P V + Sbjct: 182 NAEEGDLVWAEPLN-ARGYGPRKGRIVSIEGHVDDRTNWSLIALAEQDIPIHFPPEVVEA 240 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 L + DLR LPL+TID ++A+D DDAV+ E G +R+ VAIADV+ Sbjct: 241 AEALTL---PSDLSPYEDLRALPLITIDPKEAKDHDDAVFAEPIDEG-FRIVVAIADVAQ 296 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVRP +PLD+EA+ RG SVY +V+PMLPE LSNGLCSL DR + CE+ + G Sbjct: 297 YVRPGSPLDQEAKRRGNSVYLIDRVVPMLPEALSNGLCSLKAGEDRTALCCELIIGPNGG 356 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 ++F+ A+++ H L Y + G R + ++ L ++ L+ AR + Sbjct: 357 RKRHRFFRALINCHRGLAYEEAQAAADGRLTDRTRDLK-DSVIDPLWAAWQALETARRKS 415 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 + + E + + + ++RI + QR DAH+LIE M+ AN+ AA +E A ++R Sbjct: 416 PSLDLDMPERQILLAEDGAVDRIVRKQRLDAHRLIEAYMVTANVCAAETLESANRALIYR 475 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 +HD P E I R L+ +G LP G +P + +L + D+ + +++ +LR+ Sbjct: 476 VHDVPDEERIDGLRVYLSSMGYSLPKGQVLKPAKFNHILRAARDKDETDLVALAVLRTQM 535 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 QAIY EN GHFGL+L+ YAHFTSPIRRY DLT+HRA+ G G Sbjct: 536 QAIYSTENLGHFGLSLRRYAHFTSPIRRYADLTIHRALVSARRLGPG--------GMRAE 587 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 + + +H S+ ERRA A R D F+ D+ GN F G IS VT G FV LD Sbjct: 588 DEAHLADVAEHISVTERRAVAAERATQDRYLASFLEDREGNDFHGRISGVTRAGLFVTLD 647 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + DG + + SL DYY+ D+ L+G+ SG Y LG RVEVR+ V + + F + Sbjct: 648 ETGADGFIPMRSLHTDYYQHDEERNALIGQRSGGHYHLGQRVEVRLLEVTPLQGGLRFEM 707 Query: 725 ISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDA 784 +SS A + + G G R + G+K RG + PK+A +D Sbjct: 708 LSSPEAVETAPAASSAEKAAKKRGATDGARGRPGQKPR-GAKRGKRGAEDRPPKSAAQDK 766 Query: 785 RKAKKPSAKTQKIAAATKAKRAAK 808 A + K A AT ++A K Sbjct: 767 ------PASSAKRAPATPPRKATK 784 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 199/695 (28%), Positives = 346/695 (49%), Gaps = 23/695 (3%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL----- 78 IL+ + +K + V+ ++ + + + M +G+L L Sbjct: 14 ILQIVRLEDKKPIPPGIIVK-KLDNRYTKTAIYKEIDKMLANGELKKLANNKVVLGYQNS 72 Query: 79 -PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 P+ ++ G + +G GF+++E + Y+ + + ++ D V PL Sbjct: 73 APDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDLVEFAPLTVQNDWY 132 Query: 137 R----EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 + +A I++VL ++ VG Y V+PDD +L + +++ + + + Sbjct: 133 KHDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKLIYKVVLDR-HYLELKEHDRI 191 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 + E+ + ++ +V+ +G G+ +D H I + Q + + LK E+ Sbjct: 192 LFEIIE--IKQGVIRAALVKKIGSKEDLGIDIDAIAYNHLIEPTFSQEIINEAKSLKYEL 249 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + K R DLRDL +TID A D DDA+Y +K + L VAIADV +YV+ P+ Sbjct: 250 DDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLKVAIADVCHYVKFDGPM 309 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 DR AR + TSVY ++VIPMLPE LSN LCSLNP VD+ +V ++ + G++ ++FY Sbjct: 310 DRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGDLMIDGTGKIMSHEFYP 369 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 A+++SH R +Y +V DL++ + + L+E L K+L + + +RG + F+ + Sbjct: 370 AIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAKILRRMKIKRGYLQFDVD 429 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E + I + +A ++IE+ M+ AN + F K ++R+H KP+ Sbjct: 430 ETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFASKYNLDFIYRVHPKPAVH 489 Query: 493 AITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + SF + L E+ G N + D + L + AD +++ +LLRSM +A Y E Sbjct: 490 KLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKLINKLLLRSMNKAYYSVE 549 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N HF LA + Y HFTSPIRRY D +HR + + Q + H +++ Sbjct: 550 NTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTDLQRNELKSH-----LVE 604 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV-ISSVTGFGFFVRLDDLFIDG 670 + E A + RDV +L +M + +GN + V I+++T FG FV LD+ I+G Sbjct: 605 WCDLINKQELVAVDCERDVNAFLYVKYMSNFLGNWYHNVTINAITNFGMFVELDN-GIEG 663 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR 705 LV +++++ DYYR+D L+G ++ + Y++GD Sbjct: 664 LVRLNNINGDYYRYDPNTDSLIGRNTHKKYQIGDT 698 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 246/773 (31%), Positives = 367/773 (47%), Gaps = 47/773 (6%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +P+RE I++ +T E PA + E+A ++G E++ L+ L+ M +G + R + + Sbjct: 9 LPTREQIIDFITTSEAPAGKREIARAFGLQGNEKI-ALKALLKDMADEGLIDSARGRAFH 67 Query: 78 LPERLDLVKG--TVIGHRDGYGFLRVEGRKDDLYLSSEQM---------KTCI-HGDQVL 125 + V +G E + Q+ + + GD++L Sbjct: 68 RMGGIPKVTVLRITDVTDEGVPLAVPETWHGE-NGPPPQLRVREIRARKGSALGVGDRIL 126 Query: 126 AQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG 185 A+ A A ++ L + ++G + ++ P D R D L+ Sbjct: 127 ARTEEAGSG--WIAHPMKKLARGEALMLGILHRDGDRLWLRPVDKREKRDTLV--SDAGD 182 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQV 245 A G +V+ E RP R ++ E LGD +A+ H IP ++P+ V ++ Sbjct: 183 ADAGDLVLAERAGRPPR---ITARVTERLGDPFAPRSFSLVAIHKHGIPDVFPETVIEEA 239 Query: 246 AGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLWVAIAD 301 + + GR DLRDLP+V ID DARD DDA++ GG+R VAIAD Sbjct: 240 GLVTRL---DLGEGREDLRDLPIVAIDPADARDHDDAIWAMPDDDPGNPGGFRAIVAIAD 296 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVRP + LDREA+ RG SVYFP +V+PMLPE LS +CSL DR MVC +TV + Sbjct: 297 VSFYVRPGSALDREAKKRGNSVYFPDRVVPMLPEALSADICSLKHGEDRAAMVCHLTVKA 356 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKA 420 G L ++F AV+ A + Y + G L L+ L +K L A Sbjct: 357 NGTLANWRFARAVVRIAANIAYEDAQAAIDGAPVAGTWDKALADSALKPLWACWKALASA 416 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ R + + E + + + + RI + +R DAH+L+E+ MI AN++AA+ +E K P Sbjct: 417 RDAREPLDLDLPERRVVLDEKGRILSVAPRERLDAHRLVEDYMIAANVAAAKALEAKKAP 476 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ++R H+ PS E + + + LA +E G P + +L+ + D + +L Sbjct: 477 VMYRDHEPPSREKLVALKDYLATFDMEFALGQVVRPATFNHILKRITDDAIRPQIMEQVL 536 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT---- 596 RS QA Y P N GHFGLAL SYAHFTSPIRRY DL +HR++ E G Sbjct: 537 RSQTQAYYAPRNAGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYGLETGKPRLEGPGR 596 Query: 597 -----TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 T E M +G+ S AERRA EA RD D F+ +VG + I Sbjct: 597 SGDIVPRTALTQEEAERMTPIGELISQAERRAMEAERDTIDRYVAAFLSTKVGELLDTRI 656 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 + V FGFF ++ L DGLV VS+L + + +D+ Q L GE SG Y G ++ +R+ Sbjct: 657 TGVQPFGFFATVEGLGGDGLVPVSTLGAERFHYDEGAQALEGEESGDRYTPGMKLRLRLV 716 Query: 712 AVNMDERKIDFSLIS-----SERAPRNVGKTARE----KAKKGDAGKKGGKRR 755 N + F L R PR R + + + KGG+RR Sbjct: 717 EANPINGSLRFELEEGASHLPMRGPRGTRGPKRPMMGRRGRPANIRHKGGRRR 769 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 214/691 (30%), Positives = 321/691 (46%), Gaps = 50/691 (7%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDD--------LYLSSEQMKTCIHGDQVLAQP 128 LP D G + G F+ +E + + +E + GD+V+ + Sbjct: 146 RLPLGPDEYIGRIQFRAGGSAFVVLEATGGRPADPSQPPIQVFAEDTDVALPGDRVVVRV 205 Query: 129 LGADRKGRREAR----IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 A R+GRR + RVL +VG VVPDD R +++ + Sbjct: 206 F-AGRRGRRPGEKIGGVERVLERGRDTVVGDLRRRGRDYLVVPDDPRFVYEVAVSDPARS 264 Query: 185 GAR----MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 G + G VVV+L R G+I LG + + + + +P Sbjct: 265 GVKPAPQPGDKVVVKLHAWNRRHDPLTGEIESRLGRTHEPQAELLAIFQKYNLVTTFPAD 324 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VE++ A L + V AGR+D R+ P+ TID +DA+DFDDA+ E GG R+ + IA Sbjct: 325 VEREAATLPDRVHPRELAGRLDYREQPVFTIDPDDAKDFDDALSYEPLHGGDVRVGIHIA 384 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS YVRP T LDREA+ RG S Y VIPMLPE LSNGLCSL DRLC +T + Sbjct: 385 DVSTYVRPGTALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCSLVEGQDRLCKAVFLTFA 444 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK--------------- 405 GRL F + S RLTY + + ++ R + PL Sbjct: 445 KNGRLKETTFANTAIRSRKRLTYKQAYALMFEHDLDRIRALPLPPKHQTGSTGRALSALS 504 Query: 406 ---------HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAH 456 + L + L R G + + E K + + +R+E+ + +++H Sbjct: 505 DAELVDLQSWVRALWKIASRLRHDRMAHGSLDLDMPETKIFVDEQGYADRLEKIEHDESH 564 Query: 457 KLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEP 516 +LIEE M+ AN + AR P+L+R+HD+P + + +R +LA + G+ Sbjct: 565 QLIEEFMLAANEALARLTRTHSLPSLYRVHDEPDPDKLDEYRQLLATFDIH--TGDLTRR 622 Query: 517 RDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDL 576 + +L+ +++ P L+T LLRS+++A Y GHFGL + Y HFTSPIRRY DL Sbjct: 623 EELVKLIRTLSTHPQGYTLRTQLLRSLRKAAYRATADGHFGLNKKDYTHFTSPIRRYADL 682 Query: 577 TLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC 636 +HR + L K HQG G Y++ + LG+H S+ E + EA R+ Sbjct: 683 VVHRVFDFYLVK---HQGGRPAHGHTSYNLGHVESLGEHLSLTEINSAEAERESVKVKLL 739 Query: 637 DFMLDQVGNV----FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 +F ++ F V++ V GFFV L + G V +L +D+Y + G Sbjct: 740 EFFERELAKKKKTPFAAVVTDVRQNGFFVELVESMTFGFVPTHTLSDDHYVLNNAGTMFT 799 Query: 693 GESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 G + + + DR+EV VE V+ +R IDF Sbjct: 800 GRRHKRRFAVNDRIEVVVEKVDRYKRLIDFR 830 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 198/710 (27%), Positives = 343/710 (48%), Gaps = 30/710 (4%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 I S E + L + + + E+ + +I L ++ + + + T Y Sbjct: 3 IISEERLKNFLRQEK---TFIEIVRKFNIPFNLN-HQLTNQISNLIENFVVFKTPEGKYY 58 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTCIHGDQVLAQPLGAD-R 133 P+ L G +GF+ + +K+++++ + + GD+V + Sbjct: 59 APKFLKTTSGIFRATNSAFGFVEDKENPIQKNNVFIPGRFTASALEGDEVKINIYADRFK 118 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 + + +++ ++G+ F P + D L + Sbjct: 119 SDQVFGIVTKIIQRNNKFLIGKAFKNGKYWDFEPVN--FKGDFLFRWNTTDDLINDNYYK 176 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 V++ K I++ +G + V I + E+ + V ++ A E+ Sbjct: 177 VKIIDYQKNTLKIS--IIQKIGHKSEPFLYVKIPIIESEVSNKFSADVLEE-AEKIEKEI 233 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + R DLRD ++TIDGED +DFDDA+ +K G + L V IADV++YV+ +P+D Sbjct: 234 TNIEKNRTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYVKQDSPID 293 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA+ RGTS+Y P VIPMLPE LSNG+CSL P VDR + E ++ +G K Y + Sbjct: 294 VEAQRRGTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGENLSIKIYPS 353 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++S RLTY V + G + L K L+ L +L ++ +G I +E Sbjct: 354 VINSKWRLTYKDVNNFFNGKSSFNDT--NLEKMLKTAQELNTILSLFKKNQGYIDLAIDE 411 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + E ++ R + +LIE MI AN + + F+ K K P L+R+H+KP E Sbjct: 412 IKIILDEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRVHNKPDPEK 471 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I F +L LG++ R++A ++ + + + L+ +LR+M++AIY EN Sbjct: 472 IMIFNQILKVLGVKNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQKAIYSTENI 531 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y+HFTSPIRRYPDL LHR I++ + ++ + + E + + Sbjct: 532 GHFGLAANFYSHFTSPIRRYPDLILHRIIRFFIFEKN---------KNFDFFNEILTKNS 582 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 + E++A R + + K +++ +G F I+S+ GFFV ++ LF D ++ Sbjct: 583 YLTTELEQKAFNLERKIVNIKKTEYVKKLIGQTFNAQITSIIKSGFFVEINGLF-DAMLS 641 Query: 674 VSSLD---NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 SL ND Y+ + G + +S + ++LG+ +++++E+VN+ E KI Sbjct: 642 NKSLPNNENDPYQLTEDGFCIY--NSRRRFKLGEFIDIKIESVNVWEGKI 689 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 201/719 (27%), Positives = 353/719 (49%), Gaps = 33/719 (4%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I+E L + S ++L + ++ L +E++ ++ + L +++ Sbjct: 4 KIIEILKTNKHKVSLNKLLTYFN---ALDYSLIKNYLDQLEKNNKITISLENNIYLLDQI 60 Query: 83 DLVKGTVIGHRDGYGFLRVEGR--KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 KGT+ + G+GF+ + +D +++ + IH D+V L + R +A Sbjct: 61 -YKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIHQDEV-VYILKQEEDNRLKAI 118 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFV--VPDDSRL-SFDILIPPDQIMGARMGFVVVVELT 197 ++ ++ ++G F+ +P+D SF +I ++ ++ Sbjct: 119 VIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVIVNKNEFKYEEFNIIKAKII 178 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP--EE 255 + K +++ ++G++ + +I + + + E+ Sbjct: 179 SC--KERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDKLEK 236 Query: 256 AKAGRVD--LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 R + L + +VTIDG D++D DDA+ EK ++L+VAIADVSY+VR T LD Sbjct: 237 EFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTSLD 296 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA RG S Y ++VIPMLP +LS+ LCSLNP +L VCEM + + K YE+ Sbjct: 297 KEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNKKVYES 356 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S ARL Y +V + + + K L+ + LYK L+ + ++G ISF+ E Sbjct: 357 VIISKARLNYDEVNNYFKTKTWTHDDKTK--KMLDIAYELYKKLENLKAKKGTISFDVRE 414 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + I+ + A KLIE+ M+ N + A + + P L+R H+KP + Sbjct: 415 PKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDE 474 Query: 494 ITSFRSVLAELGLELPGGNKPEP------RDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 + ++ L G+ NK +++ E + D + E+L LLR M +A Sbjct: 475 LINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIKDETEVELLNISLLRYMDKAK 534 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y EN GHFGLA Y HFTSPIRRY DL +HR +K L + + + Y Sbjct: 535 YGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLENNANY----- 589 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + ++ + E ++ E R+V C++ML++V N + IS+V FG F++LD+L Sbjct: 590 -VNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAVLKFGIFIQLDNL- 647 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++GLVH+S++++D +D+ + L+ + YR+G +V+V++ V++ +R IDF LI Sbjct: 648 VEGLVHISNMNSD-LVYDETNRILI-KPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE 704 >UniRef50_Q46363 Acetazolamide conferring resistance protein zam n=8 Tax=Chroococcales RepID=ZAM_SYNY3 Length = 782 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 189/735 (25%), Positives = 338/735 (45%), Gaps = 38/735 (5%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIG 91 +K + L +L E E +E L+ L A+E+ G LV R Y R D+V+ + Sbjct: 15 DKLVAGKFLEKKLGCESPEAIEALQIALDALEKMGVLVKER-GKYNRVTREDVVEARLRC 73 Query: 92 HRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLG-ADRKGRREARIVRVLVPKT 149 G+ F + D+Y+ + +GD+VL + + R+ E ++ +L Sbjct: 74 SSKGFCFAIQDDEDATDIYVREGNLSNAWNGDRVLVKVIKDGTRRKSPEEQVHLILDRAN 133 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILI-PPDQIMGARMGFVVVVELTQRPTRRTKAVG 208 ++ + VP D RL F++ + +Q +G + +V V + + P + +G Sbjct: 134 PSLLAQVKKSEDNYRAVPLDDRLLFELELQDKEQNLGEAVDHLVHVSVLRYPIAQHPPLG 193 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR-VDLRDLP 267 ++ +VLG + DI H++P W + + L + + R L Sbjct: 194 EVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQSLPKVIEPGELKKRTWITAKLQ 253 Query: 268 LVTI-DGE--DARDFDD-AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 LVT DG + + + A+ E + W++ + I D+++Y+ + LD+ AR RGT+V Sbjct: 254 LVTFGDGPRGETLPWQEVALSLESQAN-QWQVGIHITDIAHYIAEDSLLDQLARKRGTTV 312 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y Q+ P+ PE L G CSL P DRL + +TV +G +TG++++ +V+ +L + Sbjct: 313 YLEEQICPLFPEGLI-GRCSLIPDEDRLALSFFLTVDDRGEVTGFEYHSSVVKVDHQLDF 371 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELH-NLYKVLDKAREERGGISFESEEAKFIFNAER 442 ++V L + + + P L+EL + ++ R +RG + ++E A + E Sbjct: 372 SEVQTALADIESVSGELKPYGGLLQELFFQICPLIKSQRLQRGSFNLQTETASPRLD-EG 430 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 R+ I + L+ E M++ A ++ P L+ P E +T + Sbjct: 431 RLGVIMTQETLPIRSLLAELMVVLQREVALQLQALGIPGLYCGQVAPEGEDLTDIVKLAG 490 Query: 503 EL--GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 L G+++ P+ Y L + P +L +L ++K Y HF LA Sbjct: 491 NLDLGVKIDLEGDIIPQHYHHLSQGFESLPAKAVLNHLLANTLKIEKYFSHPAPHFALAY 550 Query: 561 QS-YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG------------------ 601 S Y H SP +RY DL + R +K +L + + + +TG Sbjct: 551 DSGYTHCVSPAQRYGDLVIQRLLKLVLTEGRDRRTKQMKTGVELNAHTCRNQISWNVLPP 610 Query: 602 --YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 ++ QL + E+ A++A +D+ K + M + G +F+G+I+ V +GF Sbjct: 611 NLQETIEGDLHQLVLGLNDREQTAEDAEKDLLGLKKAEKMKARAGEIFRGLITGVQSYGF 670 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV++ DL +GLVHVSSL +D+Y F L+G S +YRLG+ V+V+V +V+ ++ Sbjct: 671 FVQIFDLLAEGLVHVSSLKDDWYEFRSRQCALVGRKSRTSYRLGNEVDVQVRSVDYYRQQ 730 Query: 720 IDFSLISSERAPRNV 734 ID L + AP++ Sbjct: 731 ID--LGAVNNAPKDS 743 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 193/663 (29%), Positives = 320/663 (48%), Gaps = 21/663 (3%) Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 L R+ + + + GTV +GF+ ++ D++L E+M+ + GD+V Sbjct: 7 LNQLRQLKTDIKQNKVVFPGTVKSTNGRFGFVALD-EGRDVFLPPEEMQKVLPGDRVNVT 65 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 + KG+ + + +L + VGRY + FV P+ ++ I IPP + GA+ Sbjct: 66 EHEVE-KGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPKERKGAQ 124 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 + ++ + P + K K++ V+G G+ L ++ WP+ V+ Q Sbjct: 125 PDDFIYCQIHRHPIKDGKGQAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEVQTQADA 184 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 L EE + GR D + P VTID +D DDA+ G W L +AIAD + + Sbjct: 185 LTEESITSHREGREDRTEQPYVTIDSPGTQDMDDALMATPNATG-WTLSIAIADPTAMIE 243 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 P +P + EA NR T++YFP + +PMLP+ +S LCSL P+V RL +VC++ V++ G L Sbjct: 244 PGSPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNNDGSLGD 303 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP--LVKHLEELHNLYKVLDKAREERG 425 Y F++AV+ S +L+Y V H+++G +D + P + L++LH L K R E Sbjct: 304 YSFHQAVIRSQGKLSYELVSHLIEGREDDEIKALPEAVANSLDQLHQAATALRKWRSEHA 363 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRI 485 +S + E + + +RI IE +N+AH+L+EECM+ AN AA F+EK LF Sbjct: 364 LLSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFLEKQG-QGLFIQ 422 Query: 486 HDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 H + + R +L L + + L++ ++++L R + + Sbjct: 423 HPGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKSILSRQLAR 482 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A E H G+ L +Y FTSP+R++ D +HR IK L + N + Sbjct: 483 AELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQL------ 536 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 + + RA A + WLK D+ + +G I+ GFFVRLD Sbjct: 537 --------ESLQTTQFRARMAANTLEAWLKSDYAKGLPADPMEGTITRTMPSGFFVRLDC 588 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++G V L+ + FD V RL+ +G+ ++L RV V V+ + R+I+F L+ Sbjct: 589 NGLEGFVSCKDLEG-KFSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQINFKLL 647 Query: 726 SSE 728 +E Sbjct: 648 EAE 650 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 197/661 (29%), Positives = 314/661 (47%), Gaps = 45/661 (6%) Query: 84 LVKGTVIGH-RDGYGFLRVEGRK---DDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RRE 138 LV GT+ H R G+GF+ + + D+++S+ +K + GD VL + R G +R+ Sbjct: 18 LVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVALPFSLRGGEKRK 77 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVV-------PDDSRLSFDILIPPDQIMGARMGFV 191 I +VL + +VG + + P+ L ++L +G R+ Sbjct: 78 GVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHP-LKAELLPKRTYKLGDRLLLK 136 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V P+R + ++E +G+ + I +P AV Q+ + ++ Sbjct: 137 TPVWKENYPSREPPPLA-MLEFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQK 195 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 +A R DLRDL TID A+DFDDAV G + L V IADVS+YV P++ Sbjct: 196 HVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSA 255 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LDREA R S+YFP +VIPMLP LS+ LCSL P VDRL + MT S +G L+ Y+ Sbjct: 256 LDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRIL 315 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +V+ S R+TY +V I++ ++Q P+ K + ++ L ++ RE+RG Sbjct: 316 RSVIRSKYRMTYDEVDEIIE-----KKQTHPISKTILKMAELSRIFSDIREQRGCTRLVL 370 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 + + + + ++ AHKLIEE M+ AN A + FR H+ P+ Sbjct: 371 PSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNE 430 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELL-ESVADRPDAEMLQTMLLRSMKQAIYDP 550 E++ F+ +G + EP DY LL E+ A P +L + +RSMK A Y Sbjct: 431 ESLLVFQETAKAMGFTITQTPAQEP-DYQYLLQETTAGHPLEPILHSQFVRSMKTASYST 489 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 EN+GH+GL L Y HFTSPIRRY DL +HR + + L+ E E + Sbjct: 490 ENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVE----------------EEHLE 533 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLDDL 666 Q+ + CS ER A +A + K F+ + +K I + + G L + Sbjct: 534 QIVRACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEF 593 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 +G + + L Y ++G + E R G + V++ +V + + I+++L+ Sbjct: 594 CHEGFIPAAKLPQAYVLQTKIGLEELPEH----LRPGAVISVQLASVTLLTQSIEWTLVE 649 Query: 727 S 727 + Sbjct: 650 A 650 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 174/586 (29%), Positives = 300/586 (51%), Gaps = 25/586 (4%) Query: 155 RYFTEAGVGFVVPDDSRLSFDIL----IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 + E ++ +I I ++ +++V + + + K + KI Sbjct: 15 QLKEEKIFQRILNLFKAFPREIFDCQQISYRIDPTSQTNSLIIVRVLE-ILCKKKILVKI 73 Query: 211 VEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVT 270 + T + + +P +P+ E+ + + + R D R+ T Sbjct: 74 DKSKYQLKNTKSTIPSIQDEYNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLTFT 133 Query: 271 IDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVI 330 ID ++A+DFDDA+ +K + + V IADV++Y++P + +D+EA RGTS+Y +VI Sbjct: 134 IDPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVI 193 Query: 331 PMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL 390 PMLPE L N +CSL P D+LC + K ++ Y+ ++ S R TY + I+ Sbjct: 194 PMLPESLCNEVCSLRPNEDKLCFSVIFEMDGKAKIHNYRIRRTIIRSDHRFTYEEAQEII 253 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 + + L + L+ L K+L + R G I F E +F + E I Sbjct: 254 ERSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYLK 313 Query: 451 QRNDAHKLIEECMILANISAARFVEKAK-----EPALFRIHDKPSTEAITSFRSVLAELG 505 + N+A++L+EE M+LAN + A V K +P ++R+H P E I + + ++ G Sbjct: 314 KNNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSFG 373 Query: 506 LEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSY 563 +L N ++ + L + V + +++T+ LR+M++AIY EN GH+GLA + Y Sbjct: 374 YKLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKYY 433 Query: 564 AHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRA 623 HFTSPIRRYPD+ +HR ++ L ++ Y S + + +L +HCS E A Sbjct: 434 THFTSPIRRYPDMIVHRLLEKYLNRK------------YSVSKKSLERLCKHCSEQESIA 481 Query: 624 DEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 +A R + +FM +VGN F GVIS+VT +G +V L + +GL+ + LD+D+Y Sbjct: 482 IQAERASIKAKQVEFMSTKVGNTFDGVISNVTEWGLYVELGN-GCEGLIPMRYLDDDFYE 540 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 D+ RL+G++ Y LGD +++RV N+++R++DF+ IS ++ Sbjct: 541 LDEKTYRLIGKTKKHIYCLGDPLQIRVIHSNLEKRQLDFAPISFKK 586 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 216/661 (32%), Positives = 322/661 (48%), Gaps = 30/661 (4%) Query: 90 IGHRDGYGFLRVE--GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVP 147 + GYGF + K +++ ++ + GD++ +++ E RI ++ Sbjct: 2 HVNPGGYGFAQPLSGDEKRSVFIPPGYLRGALDGDEIEVVAWESEKG--LEGRIEAIVTR 59 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP--PDQIMGAR------MGFVVVVELTQR 199 K ++IVG G + DD R+ + ++ P G++ G VVV + Sbjct: 60 KRTRIVGVLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNY 119 Query: 200 P-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P +R + ++ VLG+ V L I + V + A + E V +E Sbjct: 120 PGSRDPEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEAAEVPEIVLDEDLE 179 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG----GWRLWVAIADVSYYVRPSTPLDR 314 R DLR L +TID DARDFDDAV E +RL VA+ADVS+YV+ T +D Sbjct: 180 NRADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTAIDE 239 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA+ R S Y P + IPMLP LS+ +CSL P+ DRL MV M V++ G+ + ++ A+ Sbjct: 240 EAQRRCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEHEVRAAI 299 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S RLTY +V L+G + L ++ V L L AR RG I + EA Sbjct: 300 IHSRRRLTYAEVAEELEGAEQLGKKARGRV---FALRACSDRLRNARMRRGAIELDLAEA 356 Query: 435 KFIFNAE-RRIERIEQTQRND-----AHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 K + + R R R+ A+ LIEE MI AN + + PA+FR+HD Sbjct: 357 KVVLEEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFRVHDL 416 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P E +T+ LG + PR + L+ + + A L ++LR+M QA Y Sbjct: 417 PDEEKLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMAQAQY 476 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 EN GHF LA +Y HFTSPIRRYPDL HR +K +AK+ G G E Sbjct: 477 AVENVGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMP-GREA 535 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 S ER A R+ + FM D++G+ F G +S ++ FG FV+++ ++ Sbjct: 536 SEAQALRSSEREREISGAERETQNLFAALFMRDRIGDRFDGRVSGMSQFGLFVQIESPYV 595 Query: 669 DGLVHVSSLDNDY---YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 DG+V V+ L+ D Y D+ G R++GE SG+ +GDRV V + V++ R+ID LI Sbjct: 596 DGMVKVADLEKDRKEPYYRDETGVRMVGEKSGKVITVGDRVVVDLVDVSVGRRQIDLYLI 655 Query: 726 S 726 Sbjct: 656 D 656 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 177/649 (27%), Positives = 312/649 (48%), Gaps = 16/649 (2%) Query: 86 KGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RREARIVR 143 +G + GF+R + K Y+ + + GD V PL + G + +A +++ Sbjct: 83 QGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGDLVEFCPLDKPQVGDKFDAAVLK 142 Query: 144 VLVPKTSQIVGRYFTE----AGVGFVVPDDSRL-SFDILIPPDQIMGARMGFVVVVELTQ 198 ++ G + E +V D+ R I+ V ++ + Sbjct: 143 IVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRFYLTPIVNKASVPAELESNTKVAFQIDE 202 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 I ++LG+N + + + H I + VEQQ A L+ + E++K Sbjct: 203 YDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFEDNDVVEQQAAKLQFDEKEQSKP 262 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DL +L VTID ++D DDA+Y ++ G + L+VAIADV+YYV+ ++ LD EAR+ Sbjct: 263 YRKDLTELAFVTIDPATSKDLDDAIYVKRTDKG-FVLYVAIADVAYYVQRNSELDIEARH 321 Query: 319 RGTSVYFPSQVI-PMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 + +S+Y P + PMLPE LSN LCSLNP R +VCE+ + RL + Y A + S Sbjct: 322 KTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFSEVYPATIVS 381 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R Y++V L+ L+++ A +++ L+ L +++ + R+++G I E + + Sbjct: 382 QRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQRKKKGTIDLSHSETEVV 441 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + I A +IE M++AN + A + K +R+H +PS + + Sbjct: 442 VDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTNHKVHLPYRVHPRPSKKKLQML 501 Query: 498 RSVLAELGLELPGG--NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + EL + P + A L+ D P ++ +LLR++ +A Y H Sbjct: 502 LENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDIFVILLLRTLGKAFYIVNPLIH 561 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 F + Y HFTSPIRRY DLT+HR + L + E E+ Q+ + Sbjct: 562 FSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTDTEREQLN-----AELEQICET 616 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 + E + + R D+L ++ QVG F G IS++T FG F+R+D+ DGL+ ++ Sbjct: 617 INDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGIFMRMDENNFDGLIKIT 676 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 S+ D++ F++ L G+ + + +R+GDR+ ++ ++ +++ +L Sbjct: 677 SIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKRAILTL 725 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 189/724 (26%), Positives = 341/724 (47%), Gaps = 31/724 (4%) Query: 15 ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 N I +E + +L K+ K S ++A EL ++ + L + L ++ ++ T+ Sbjct: 11 PNTINIKEEDVLNLIKKFKTLSFLKIAKELKLKSCDNHY-LTKFLYSLLDANKIDKTKNG 69 Query: 75 CYALPERLDLVKGTVIGHRDGYGFLRVEGRKD--------DLYLSSEQMKTCIHGDQVLA 126 + L + V+ + GF+ ++ + +++ Q+K + D V A Sbjct: 70 DFYLLNYVCEVENQISITNKRLGFIDLDNALETNNDENKCSAFVAPFQLKNVLDKDLVQA 129 Query: 127 QPLGADRKGRR---EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR--LSFDILIPPD 181 + + + + I V+ I+G + D R +F + + Sbjct: 130 KIYSYQDENNKTLYKGVISNVIKHNCKNIIGFIEFKENRPIFNAFDERNKANFFFINTSN 189 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + +V + + P ++ A+ ++ + + + +++ + V Sbjct: 190 FPKIIKSTDLVKCIILE-PNAKSVAIA-FDSIITNLNDKNYVIKKIMAANDVKGGFGLEV 247 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 ++ A + +E+ E RVDL L VTIDG D +DFDDA+ C K G ++L++ IAD Sbjct: 248 LEKAATIPQEIIPEDYDNRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIAD 307 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YV+ +D+EA RGTS+Y P +VIPMLP LSNG+CSLNP V R C+ E+ + + Sbjct: 308 VSHYVKEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELDN 367 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G+ K Y +++ S RLTY +V ++ + L L + K+L + Sbjct: 368 HGKNVSSKVYASLIKSDYRLTYNEVNDFFNQKIEVPNEINNL---LSRAREISKILRAKK 424 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 + G + FE EE K I + I+ I + +A KLIE+ M+ AN + A +++ K P+ Sbjct: 425 IKDGYVDFEIEEPKIIM-EDNDIKDIVIRKDGEAEKLIEDFMVRANETIAEMMKELKIPS 483 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLE-LPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ++RIHDKP T +++ + +L +G++ + P+ + ++ + + L+ LL Sbjct: 484 IYRIHDKPETLKLSALQELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKMALL 543 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R+M++A Y N GHFGLA +Y+HFTSPIRRYPDL LHR I+ + + + Sbjct: 544 RTMQKAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGK------FDPK 597 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 Y +E+ + Q S AE+ A R V D +K F + F + S+ FG F Sbjct: 598 NYEKVKDEIEAIAQMNSEAEKTAMTVERSVVDVMKSKFFEKFINKTFVAQLVSIEKFGAF 657 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 +++ L+ D D + +T ++G ++ + +++ ++ I Sbjct: 658 FNIEEYQASVLIRFED-DEDGLI---KISSYEAKGKSKTLKVGSEYKIAITSIDHEKGNI 713 Query: 721 DFSL 724 + L Sbjct: 714 NAKL 717 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 213/744 (28%), Positives = 361/744 (48%), Gaps = 30/744 (4%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + +L++L K K S E+A I L + L ++ G +V + Sbjct: 2 KNLVLQNL-KSNKAYSFLEIARINKINPNFN-SQLSKALFSLLDQGLIVKNNDGNFIKVN 59 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREA 139 + ++G + F+ + +++ I+ +V A + K ++ A Sbjct: 60 EIKKIQGIFKQSNRNFAFIETADEQ-SYFVAKAHFNGAINSFEVEAIVYESPFEKDKKYA 118 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL-SFDILIPPDQIMGARMGFVVVVELTQ 198 + ++L +I+G G+ + + S+ + DQ + V++V + + Sbjct: 119 VVKKILKNTHPEIIGFIKISNGIKYFNAFEESFRSYKFFV--DQNIDVEEDDVILVVVEK 176 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 K V+ + +DI L + +P+ V + A +++ V E+ Sbjct: 177 --IVDQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDFPEDVLDESALIEDHVIEKDYQ 234 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLRD ++TIDGED +DFDDA+Y EK + + L V IADV++YV+ ++ +D+EA Sbjct: 235 NRKDLRDKLIITIDGEDTKDFDDAIYVEKNKD-HFLLSVHIADVAHYVKENSAIDKEALR 293 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TS+Y P VIPMLPE LSNG+CSLNP VDRL M ++ + +G + YE +++S Sbjct: 294 RATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSK 353 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY +V L L K L + L K+L+ +++ G I+ E EE+K I Sbjct: 354 HRLTYNQVNDFYNNKIKL---DPNLEKMLNDSLELSKILENYKKDEGYINLEIEESKVIL 410 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + E + I+ QR + LIE M+ AN + A + K K P+++R+HD PS E++ F Sbjct: 411 DKEGKTVGIKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLPSIYRVHDNPSIESLVLFE 470 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEMLQTMLLRSMKQAIYDPENRGHFG 557 L LG++ P+ +++ E + ++ M+LR+M++AIY +N GHFG Sbjct: 471 KTLKTLGIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVLRTMEKAIYSDKNIGHFG 530 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y+HFTSPIRRYPDL LHR IK ++ + + + H+S+ + + S Sbjct: 531 LASSYYSHFTSPIRRYPDLQLHRLIKQMVFDK-----SNLKEKKNHFSL-ILSDVSVQSS 584 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 E A R + D K ++ ++G K I S+ FG FV +D + GL+H+S+L Sbjct: 585 KKEVEAVSIERQINDIKKAEYYESKIGKSLKAQIVSILSFGMFVEFED-KVSGLIHISNL 643 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR-------VEAVNMDERKIDFSLISSERA 730 + ++ + G L+ S+ Y+LG ++V + V++ K + E+A Sbjct: 644 LGEDFQVSEDG--LLISSNKTKYKLGQEIDVVVVKVDKNLGKVDVVLEKDYQEYLKKEQA 701 Query: 731 PRNVGKTAREKAKKGDAGKKGGKR 754 + K + K+ GK K+ Sbjct: 702 FQAFKKNKFTQDKEKQNGKINYKK 725 >UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DHS2_THEEB Length = 754 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 180/733 (24%), Positives = 306/733 (41%), Gaps = 44/733 (6%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTV 89 +K + L +L + E L L A+ER G L+ R Y L++ + Sbjct: 13 SEDKFVAPKVLEKKLGCDDPESQRELEIALDALERIGLLIKER-GKYRRASDEGLIEARL 71 Query: 90 IGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARIVRVLVP 147 G+ F + +D+++ Q+ T +GD+VL + R+ + E + +L Sbjct: 72 RCSSKGFCFAIQDAEGAEDIFVREHQLSTAWNGDRVLVRVTREGRRKKSPEGEVKLILER 131 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI---MGARMGFVVVVELTQRPTRRT 204 ++ R P D RL F+I + P+ + + + +V V + + P Sbjct: 132 GNPSVIARVKQTEDGFRATPLDDRLLFEIALEPNDLVPDLSTVVDQLVHVHIRRYPLGGY 191 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 G+I ++LG + + +D+ H + + A+ A L ++ + R DLR Sbjct: 192 LPTGEIGQILGSDAQSAPILDLICCKHNLVRQFNPALRTAAATLNAQLETLDFSDRQDLR 251 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 +L +T+ ++ A + W+L + I+DV + LDR AR +G S+ Sbjct: 252 ELVTITLVAPG-QEPQVAFSLDGLGPDLWQLGIHISDVGGLLPRDELLDRTARRQGMSLA 310 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 P +P+LP+ L L P DR + + +++ G + Y+ Y + + A +T Sbjct: 311 TPELSLPLLPQELET--LRLLPGGDRAAISLLIVLNTAGEVQSYRIYRSCIRVDACVTSE 368 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE-AKFIFNAERR 443 +V L + L L +L + + R+ RG I E + + E Sbjct: 369 QVAATLALGDSSGD-------WLRALIHLANAVSQRRQARGSIEVTPAEALRLAYADEGL 421 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 I + L+ ILAN R + K PAL+R P + F + Sbjct: 422 APAIFLPKVTPWTSLV----ILANELLGRHLAKLGVPALYRTQPVPELYGVQDFLKLCQN 477 Query: 504 LGL--ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA-L 560 L L L ++ PRDY + +A A +LQ +LL +K A P HFGLA Sbjct: 478 LNLPLSLDHPSQVTPRDYQRFMAQLATSDLAALLQELLLDKLKPASDSPVVLTHFGLATA 537 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ--------- 611 + Y HF SP++RY D+ R + LL + + +G + + Q Sbjct: 538 EGYGHFCSPLQRYTDIVNQRILHLLLTEGRDRRGPRAKERVNLGDSSCLEQVNWTVFTTD 597 Query: 612 -----------LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 L H ER+ A +D+ + + +G V G+I+ V +GFF Sbjct: 598 IQREVDTLVKELAPHLQERERQTYTAWKDLVGLQRVRQVQACIGEVRPGIITGVQSYGFF 657 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L D ++GLVHVSSL +D+Y + Q L G + YRLGDRVEV ++ V+ +++ Sbjct: 658 VELLDFNVEGLVHVSSLKDDWYEYRAHAQTLTGRRNRLRYRLGDRVEVLIKNVDSYRQQV 717 Query: 721 DFSLISSERAPRN 733 D ++S Sbjct: 718 DLGVMSGGSQATE 730 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 189/697 (27%), Positives = 333/697 (47%), Gaps = 29/697 (4%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 +P + E+ +I + + ++ + + + Y P L+ G Sbjct: 14 QPKTFIEITKNFNIPYNKNYT-ITNQISKLIENFVVFKLPDGRYHCPVFLESKVGIYRSK 72 Query: 93 RDGYGFLRVEGRKDD---LYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREARIVRVLVPK 148 + +GF+ + +++ ++ + GD+V + ++ I ++L Sbjct: 73 QATFGFVEDKDNPQSENNIFVPAKFSANSLEGDEVRVNIYKDSLKPEQKYGVITKILHRN 132 Query: 149 TSQIVGRYFTEAGVGFVVP--DDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++G+ P ++++ F P + G V V++ R K Sbjct: 133 LKFLIGKIVENGTFLDFEPINLNTKVLFRWQ-NPSMTSSLKSGDFVKVKIVDYQKRILKI 191 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 +++ +G + V I + + I+ + V Q+ + +E+ + R+DLR+ Sbjct: 192 S--LIQKIGHESEHFLNVKIPIIDSGVSTIFNEEVIQESKQIPQEI-KSIDPDRIDLRNE 248 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 ++TIDG+D +DFDDA+ E K + L V IADVSYYV + LD EA+ RGTS+Y P Sbjct: 249 VVITIDGDDTKDFDDAISIETKENN-YILKVHIADVSYYVTEDSALDLEAKARGTSIYLP 307 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 VIPMLPE LSNG+CSLNP VDR + E + G+ K Y +V+ S+ RLTY +V Sbjct: 308 HIVIPMLPESLSNGICSLNPNVDRYTITMEALIDKNGQNLSVKIYPSVIRSYKRLTYHQV 367 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 + L L+ L ++L K +E +G + E +E+K I + + ER Sbjct: 368 NEFFDNKLSFGD--PKLENLLKNALKLGQILRKYKENQGYVDLEIDESKIILDEQGYTER 425 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 IE +R + +IE+ M+ AN + ++++ P L+R+H+KP ++ I ++ LGL Sbjct: 426 IEIKERGLSENIIEDFMVRANENVSKYLADHNFPNLYRVHNKPDSQRILQLNQIIKNLGL 485 Query: 507 ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 E+ + + +A+ + + ++ + ++ +LR+M++AIY N GHFGLA + Y+HF Sbjct: 486 EIQIPYNVDSKSFADFVNQIKNKQNDNFIKIAILRTMQKAIYSDVNEGHFGLASKFYSHF 545 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPDL LHR I++ + + + + E++A Sbjct: 546 TSPIRRYPDLILHRIIRHFIFNKNTDITHFNNILAIE---------ASSTTELEQKAFVL 596 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN---DYYR 683 R + K +++ +G F I+S+ FGFFV ++ +F D LV V SL + D Y Sbjct: 597 ERKIVGIKKAEYINKHIGKSFNAQINSILKFGFFVEIEGIF-DALVGVKSLPDNDEDVYN 655 Query: 684 FDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + G + +S ++LG V V + V+ K+ Sbjct: 656 VSEDGFSI--SNSKFEFKLGQIVNVTITEVDTWNGKV 690 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 195/691 (28%), Positives = 318/691 (46%), Gaps = 55/691 (7%) Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTC 118 L+ +E +G + ++ L + GT+ + G GF+++ + +++ + +++ Sbjct: 100 LQILEAEGLIELEKKN--ILVNSNQKLLGTISTSKKGDGFVKLPSGME-VFVPGQYVQSA 156 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 I GD V QP +KGR E + ++L V+ D + F L+ Sbjct: 157 IQGDLVEVQPNAIGKKGRLEGEVTKILRRGRDLY---------RMIVIEKDPKFIFGKLL 207 Query: 179 PPDQIMGA----------------RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGM 222 D ++G V++V+L + V+ L T Sbjct: 208 DIDGEEKEGYLLRKTILMNLQDEIQLGDVLIVKLREETEHERNLYE--VQFLRFESDTKE 265 Query: 223 AVDIA--LRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFD 280 +D+ L + ++P+ + + +E + RVDLR+L +TIDGE ++DFD Sbjct: 266 DLDLMRMLMKYNYSILYPENIVLNLPEEVDESTVDDWGSRVDLRNLKCITIDGEYSKDFD 325 Query: 281 DAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNG 340 DA+ +++ R +V +ADVSYYVR T LD EA NR TSVY S+V+PMLP LS Sbjct: 326 DAISFVEEKS-RIRFYVHVADVSYYVRLGTDLDEEAYNRATSVYLGSRVVPMLPPDLSEN 384 Query: 341 LCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW-HILQGDQDLREQ 399 LCSL +RL EM KG++T K+Y++V++ R TY + IL GD Sbjct: 385 LCSLVAGKNRLAFTVEMEADWKGKITHVKYYKSVINVAERYTYNRAESEILSGDPG---- 440 Query: 400 YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLI 459 + ++ K L R E G + +E K + ++E + I R AH LI Sbjct: 441 -----NWIFRMNEFAKALRARRIEDGRVDLNLKENKVVTDSEHNVVEISVQDRLQAHILI 495 Query: 460 EECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 EE M+ ANI A + K K P L+RIH+ + E + S + L G+++ + Sbjct: 496 EEFMLSANIKIAESIRKKKHPTLYRIHEPMNEEKLESLNAFLQLNGIKILLKDS-SYEAI 554 Query: 520 AELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 +L+ + +P + LLR+ QA Y E GH+GL + Y HFTSPIRRYPDL H Sbjct: 555 RAVLKELEGKPAERLFNMFLLRTFMQAYYSGEYLGHWGLGFEDYCHFTSPIRRYPDLVCH 614 Query: 580 RAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM 639 R ++ +L ++ Y EE++ LG HCS ER+A +A RD C ++ Sbjct: 615 RVLQQILLGKKP-----------LYGPEEVVTLGLHCSHQERKASDAERDYYKLKACRYL 663 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 F I+ FV L++ +D + S ++ + + + Sbjct: 664 EKTGIKEFSATITGCKPHLIFVDLENPSVDACLISSEFTDEGEIRLETDFSFYSKKYSKI 723 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 Y LGD++EV ++ V+ +E KI + ++ Sbjct: 724 YTLGDKIEVELDRVDYEEIKIFVKMKKFQKK 754 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 170/742 (22%), Positives = 297/742 (40%), Gaps = 83/742 (11%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYAL----------PERLDLVKGTVIGHRDGYGFLRV-- 101 L RL + +G + + + ++ + ++GT R+ Y V Sbjct: 206 ELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWI 265 Query: 102 ----EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-----------KG----------- 135 E K+ + + + +H D V + L + +G Sbjct: 266 HGDNEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEE 325 Query: 136 --------------RREARIVRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDIL 177 + R+V ++ G E+ P D R+ I Sbjct: 326 TERMLKTAVSEKMLKPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPR-IR 384 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI- 236 I Q G ++V + P G V LGD ++ L H++P+ Sbjct: 385 IETRQASTLE-GRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 443 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + QAV + + + E+ R DLR L + ++D D DDA++C + G + Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 503 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+++RP LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 563 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 ++ + KF ++V++S A LTY + + D + L L+ L K+ Sbjct: 564 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRI----DSANMNDDITTSLRGLNKLAKI 619 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAARFV- 474 L K R E+G ++ S E +F ++E ++ + + + ++EE M+LANIS A+ + Sbjct: 620 LKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIH 679 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 E+ E AL R H P LE+ + + ES + Sbjct: 680 EEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTL 739 Query: 535 LQTMLLRSMKQAIY----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 L+ + R M QA+Y + H+GLA Y HFTSPIRRY D+ +HR + + + Sbjct: 740 LRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADC 799 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 + T + ++ + ++ + + A A R + F + + Sbjct: 800 TYPELTDKH--------KLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851 Query: 651 ISSVTGFGFFVRLDDLFIDG--LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 I V V + ++G N +D L E + + + D+V+V Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKV 909 Query: 709 RV--EAVNMDERKIDFSLISSE 728 ++ ++ N+ +KI SL+ + Sbjct: 910 KIMLDSSNLQHQKIRMSLVEPQ 931 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 196/794 (24%), Positives = 316/794 (39%), Gaps = 100/794 (12%) Query: 46 IEGEEQLEGLRRRLRAMERDGQL--VFTRRQCYALPERLD------------LVKGTVIG 91 + GL +L +E DG V +R+ + PE L +G Sbjct: 190 VRSLRDHPGLLDKLAKLELDGAAGEVGDKRKGFLFPEHLPQSALHLGIKSGKYEQGKFQA 249 Query: 92 HRDGY--GFLRV----EGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR----------- 133 R+ Y G + + EG + + + +H D V+ + L ++ Sbjct: 250 SRENYLEGNVVIGGDNEGESRSILIQGRGHLNRAVHDDLVVVETLPEEQWSLPSGLVLLD 309 Query: 134 -----------------KGR------REARIVRVLVPKTSQIVGRYF----TEAGVGFVV 166 K R RIV +L K G EA V Sbjct: 310 ETQDEDEDKGDEEAKLSKKRAVSNKVPTGRIVGILRRKWRPYCGILQPSNIKEATRHLFV 369 Query: 167 PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 P + R+ I I Q +VV + P G +V+ LG+ + Sbjct: 370 PAERRIP-KIRIETRQA-DVLCRQRIVVSIDSWPRDSRYPQGHLVKALGEVGDRATENQV 427 Query: 227 ALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 L H+IP+ + ++V + L + + + R DLR L + ++D D DDA++C Sbjct: 428 LLLEHDIPHQCFSRSVLDCLPSLPWTIGPKEEKNREDLRHLCICSVDPPGCTDIDDALHC 487 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 + G + + V IADVSY+VRP T LD+EA NRGT+VY Q I M+PE+LS LCSL Sbjct: 488 RELPNGNYEVGVHIADVSYFVRPGTALDKEAANRGTTVYLVDQRIDMVPELLSANLCSLR 547 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK 405 +RL VS + + KF+++++ S A LTY + + E L Sbjct: 548 GGEERLAFSAIWEVSPEAEVLHTKFHKSIIKSRAALTYAEAQARIDDTSLNDE----LTL 603 Query: 406 HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMI 464 L L+ L K+L R G ++ S E +F ++E ++ Q + + ++EE M+ Sbjct: 604 GLRGLNRLAKILKAKRIANGALTLASSEVRFHVDSETHDPIDVQTKQLLETNSMVEEFML 663 Query: 465 LANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 LAN S AR + ++ E AL R H P+ + G + + AE L Sbjct: 664 LANASVARHIFQEFPECALLRRHPAPAPANLEPLVKAGHSKGFVVEVESGLR---LAESL 720 Query: 524 ESVADRPDAE---MLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYP 574 + D ML+ + R M +A+Y PE+ H+GLA+ Y HFTSPIRRY Sbjct: 721 DRAVDPEQPYFNVMLRMVATRCMARALYFCSGCVAPEDFDHYGLAMPFYTHFTSPIRRYS 780 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL +HR + + E + + + +L + + A A R Sbjct: 781 DLMVHRLLGVCVGAEATYPDLVHKN--------KCQELCNNLNYRHNMAQYAGRSSVALY 832 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 F D+V + +G + V V + ++ + L D + +DQ Sbjct: 833 TQAFFRDKVLDE-EGYVLFVRENALQVLMPRFGLEATL---FLKEDGWSYDQEANTQT-- 886 Query: 695 SSGQTYRLGDRVEVR--VEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGG 752 G T R DR+ V+ V++ N+ +K+ L+ P+ G + A+K D +K Sbjct: 887 CGGVTLRQFDRLVVQLSVDSRNVQHQKVVVKLVD----PKIPGVSVEPSARKADDTQKQA 942 Query: 753 KRRQVGKKVNFEPD 766 + Sbjct: 943 DDPPRKRSKVAASS 956 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 170/742 (22%), Positives = 297/742 (40%), Gaps = 83/742 (11%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYAL----------PERLDLVKGTVIGHRDGYGFLRV-- 101 L RL + +G + + + ++ + ++GT R+ Y V Sbjct: 44 ELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWI 103 Query: 102 ----EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-----------KG----------- 135 E K+ + + + +H D V + L + +G Sbjct: 104 HGDSEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEE 163 Query: 136 --------------RREARIVRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDIL 177 + R+V ++ G E+ P D R+ I Sbjct: 164 TERMLKTAVSEKMLKPTGRVVVIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPR-IR 222 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI- 236 I Q G ++V + P G V LGD ++ L H++P+ Sbjct: 223 IETRQASTLE-GRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 281 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + QAV + + + E+ R DLR L + ++D D DDA++C + G + Sbjct: 282 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 341 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+++RP LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C Sbjct: 342 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 401 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 ++ + KF ++V++S A LTY + + D + L L+ L K+ Sbjct: 402 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRI----DSANMNDDITTSLRGLNKLAKI 457 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAARFV- 474 L K R E+G ++ S E +F ++E ++ + + + ++EE M+LANIS A+ + Sbjct: 458 LKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIH 517 Query: 475 EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 E+ E AL R H P LE+ + + ES + Sbjct: 518 EEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTL 577 Query: 535 LQTMLLRSMKQAIY----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 L+ + R M QA+Y + H+GLA Y HFTSPIRRY D+ +HR + + + Sbjct: 578 LRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADC 637 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 + T + ++ + ++ + + A A R + F + + Sbjct: 638 TYPELTDKH--------KLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 689 Query: 651 ISSVTGFGFFVRLDDLFIDG--LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 I V V + ++G N +D L E + + + D+V+V Sbjct: 690 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKV 747 Query: 709 RV--EAVNMDERKIDFSLISSE 728 ++ ++ N+ +KI SL+ + Sbjct: 748 KIMLDSSNLQHQKIRMSLVEPQ 769 >UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteobacteria RepID=RNR_THIFE Length = 439 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 219/429 (51%), Positives = 284/429 (66%), Gaps = 4/429 (0%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP ERE EKY PI SRE+IL +L +P + +++ EL + ++Q E LRRRLRAM Sbjct: 13 RDPMFEREKEKYERPIVSREYILSYLEGTGRPLTLEDIIAELEVAEDDQ-EALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + ++LV+GTV H DG+GFL E DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVAAMELVRGTVSAHPDGFGFLIPEAGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +L + +G DR+GR E +VR+L IVGRY+ + GV +VVP+D R+ + + + Sbjct: 132 TILGRAVGEDRRGRIEGAVVRILERALKHIVGRYYADNGVHYVVPEDRRIPQEFAVVEGE 191 Query: 183 IMGARM--GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 G G +V++E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP Sbjct: 192 GEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVRNYGLPHQWPDE 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ E VPE KAGR DLRDLPLVTIDG DA+DFDDAVY E G +RL VAIA Sbjct: 252 VLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIENG-FRLTVAIA 310 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV+ YV P + LDREA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM CEM + Sbjct: 311 DVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFCEMEMD 370 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + GR TG++F ++ S R TY +V IL GD +LR Q A +V HLE LH+LY+ KA Sbjct: 371 AAGRSTGFRFDRGIIGSQRRFTYDEVAAILAGDAELRAQDAAMVPHLEALHSLYESFAKA 430 Query: 421 REERGGISF 429 RE RG I F Sbjct: 431 RERRGTIEF 439 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 207/643 (32%), Positives = 327/643 (50%), Gaps = 29/643 (4%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + +L +GTV G +GF+ E + + +L ++M GD++ D KG+ +A Sbjct: 43 QEANLQEGTVRGSAGRFGFVSNE-QGESFFLPPDEMAKVFPGDEIRFS-TKEDDKGKTQA 100 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 + +++ G + FVVPD +L+ I IPP+ + E+T+ Sbjct: 101 IVEKLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPEACKDVNENDWLQCEVTRH 160 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + K KI++ LG G A+ + + WP + ++A L E+ G Sbjct: 161 PYPKGKPQAKILKNLGQLSEPGFERQYAITKFNLSHEWPDIISSELAILGEDRIPALSEG 220 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 RVDL D VTID E RD DDA+Y EK G +RL VAIAD S + P+T LDREAR+R Sbjct: 221 RVDLSDHAFVTIDSEHTRDMDDALYAEKTEDG-YRLHVAIADPSAWFGPNTSLDREARSR 279 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G S+YFP + + MLP+ LSNGLCSL RL +VC +++ + G L Y+F EA ++SHA Sbjct: 280 GNSLYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLSIGTDGELNHYEFKEATVTSHA 339 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 +L+Y +V L+G++D + A L L LH + L + R I + ++ Sbjct: 340 KLSYNQVTEFLEGEKDAVK--AELQDSLLILHETTQALHQGRIRNNLIMEDRDDYYLTVG 397 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 +++ I +T+RN A KL+EE M+ AN S A+F+++ +F H TE I + Sbjct: 398 DNGKLQSIVRTERNTAQKLVEEAMLAANKSCAQFLKEIGI-GIFVDHPGFRTERIGDIKQ 456 Query: 500 VL--AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 ++ E+G E GN E Y L+ +V + E ++T+L R + ++ Y E + H G Sbjct: 457 IVQDKEIGFE---GNFAELEGYKSLIRAVDAKEFDEPIKTLLSRFLSRSEYSLEAKPHMG 513 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 + + Y FTSPIR+Y DL +HR IK L++++ + N +E + L Q Sbjct: 514 MGFECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEIN-----------DETIALLQDAL 562 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 + RRA WLK ++ N F GVIS + G V + +L +DG + + Sbjct: 563 VTGRRAVNL---AEHWLKLQYLDKLKENQFDGVISQINPGGLTVTITELGLDGFIDLRK- 618 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 N F++ GE QT+ L +V+V V+ ++ +RK+ Sbjct: 619 -NKALSFNRTYLMFEGE--KQTFTLDQKVKVEVKKADLVDRKL 658 >UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTA8_9BACT Length = 754 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 158/731 (21%), Positives = 307/731 (41%), Gaps = 31/731 (4%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 IL+ L++ + +L L + + E R L ++R+G + ++L E L+ Sbjct: 5 ILQILSQES--LKKSQLRRRL-CKAKGDQEHFNRALADLKREGSIKKEMGGKFSLQE-LE 60 Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVR 143 + G + GYGF+ + +++ + ++G+ V +KG +I+ Sbjct: 61 VKTGILSLSVGGYGFVNPIDKSTTIFIPPNKTGAAVNGETVEVSITEQSKKG-PVGQIIN 119 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 +L K + G+ G +++P + + L + G + +L R T+ Sbjct: 120 ILESKLESLSGQLQIRKGQPWLIPLRTGIPAVELSVESVPTETKEGDWIRAKLVSRDTQT 179 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 K + + LG+ +D + ++ + E+ + +++ K R DL Sbjct: 180 GKITASLSQSLGNADDLTAEIDAIIDEFDLQSEYSDEAEEAASRIRQR-----KIARRDL 234 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGG-GWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 + TID DA+DFDDA+ + + + IADV+ Y+ P + L + R + Sbjct: 235 TKELITTIDPRDAKDFDDALSVHPAKNKKHITIGIHIADVAAYIGPRSTLMTSIKKRAFT 294 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFYEAVMSSHARL 381 Y P +++PMLP+VL + CSL + +T + G + ++ + + + RL Sbjct: 295 AYLPGRMLPMLPKVLVSKRCSLIENEVKPAHTVMITFDRESGEVINFERFHSTIKVRKRL 354 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE-RGGISFESEEAKFIFNA 440 Y +V + + K ++ L+ L K REE I ++ E + + + Sbjct: 355 NYQEVQDYADANFSGDPWGKDVCKDVKTLYEFSHTLRKRREEIEQFIPLDAPEVRVMCDP 414 Query: 441 ERRIE-RIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 +++ +++ +++EE M+ AN A+ + P LFRIH +P E SF Sbjct: 415 VTMTINSLKKDSPSESKQMVEEFMLAANTVVAQELTSKAAPGLFRIHPEPDEEQAASFSV 474 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 + G+ + L S+ P A + LR+M++A Y HFGL Sbjct: 475 DANTF-YGVSPGDITLRPNAIRFLNSIKGHPSAPAISMDFLRTMQRASYSSMKGLHFGLG 533 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Y+HFTSPIRR DL +H+ + N + GG Y+ + + L + + Sbjct: 534 KNLYSHFTSPIRRLADLLVHQQLW-----------NMEDKGGPVYTKDRLDDLAEIINTR 582 Query: 620 ERRADEATRDVADWLKCDFMLD----QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 E DEA R + K ++ +I+ V+ + + + V+ Sbjct: 583 EAVTDEAYRTTVNRFKLHYVEALEAGDSELECDALITRVSVKKMRLYIPHYGMYANVNFR 642 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK-IDFSLISSERAPRNV 734 LD+D++ D ++G +G T+ GD +EV++ + R+ + ++ +AP Sbjct: 643 DLDSDFFDADVEKGLVVGRRTGTTWSCGDTLEVKILGADFKMREFMVMPIVEGNKAPSQK 702 Query: 735 GKTAREKAKKG 745 + R+K + Sbjct: 703 ARPERKKKEAP 713 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 178/642 (27%), Positives = 312/642 (48%), Gaps = 25/642 (3%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 + +GTV G +GF ++ ++ +L+ ++M+ GD++L + D KGR A++V Sbjct: 22 NRFEGTVKGSPGRFGFAVLDDGRE-CFLNPDEMQKVFPGDRILVEV-SQDDKGRDVAKVV 79 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 + + + VGRYFT FV PD ++ I IPP + A + +V+ + Q P Sbjct: 80 QHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKRQQAHVNDLVLCRVLQHPFP 139 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 K ++V+++G +G+ V+ L + + ++ + A L+++V E + R D Sbjct: 140 EGKPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINE--AELQKQVAAELEK-RKD 196 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 LR+ P VTID +D DDA++ + GGW L AIAD S + +D+ A+ G+S Sbjct: 197 LRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIADPSTLIPEGGDIDKYAQRLGSS 256 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 YF + +PMLP L+N CSL DRL +VC M + + G ++ Y EA + A LT Sbjct: 257 FYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAISSYSIEEAAIRCAANLT 316 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y +V L Y L+ L+ + L R ++ + + + + Sbjct: 317 YEEVATALASGDASAHAYD---ATLQALNEVKAALASHRRAHALVNEDRPDYQLELDENG 373 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 +++ I + + AH ++EE M+ AN AA F+++ E +L+ H E + + +++ Sbjct: 374 KVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTERSLYTSHSGFRPERLDQIKQIVS 433 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 E + + + + ++ + P ++ + R + + + HFG+ L Sbjct: 434 EQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALSDQPCPHFGMGLPH 493 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y FTSPIR+Y DL++HR IK +L ++ H N S+ R Sbjct: 494 YTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLNAKAILQLQESL--------------RA 539 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A + WLKC++ +G F GV+ TG GF RLD+ I+G+V++ +L + + Sbjct: 540 GRSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLGAL-QEKF 598 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 RFD + GE + +RL V+V + AV+M+++ I L Sbjct: 599 RFDGTYFQHTGEH--RQFRLEQPVKVTISAVDMEKKLIQMEL 638 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 158/718 (22%), Positives = 276/718 (38%), Gaps = 90/718 (12%) Query: 83 DLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSEQ-MKTCIHGDQVLAQPLGADR------ 133 L++G R+ Y G + VE + + + + + + GD V + L Sbjct: 249 KLLQGAFQASRENYLEGSVNVETYEKGILIQGRECLNRAVDGDLVAVELLPESEWSAPSE 308 Query: 134 --------------------------------------KGRREARIVRVLVPKTSQIVGR 155 + RIV ++ K Q G Sbjct: 309 IVLEEKNVYADDVPSEERAEEEKDMLKQVQQAAAAASAERTPTGRIVGIVRRKWRQYCGI 368 Query: 156 YF----TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 VP D ++ I I Q + ++V + P G V Sbjct: 369 LQPSLIENTNRHIFVPADRKIPR-IRIETRQAAKLQ-NQRIIVTIDTWPRNSRYPQGHFV 426 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVT 270 LG ++ L H++P+ + + V + L + E A RVDLR+L + + Sbjct: 427 RSLGPLGDMATENEVILLEHDVPHCKFSEKVLSFLPKLPWSITAEDYAKRVDLRELDICS 486 Query: 271 IDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVI 330 +D D DDA++C + G + + V IADVS+++RP LD+EA RGT+VY + I Sbjct: 487 VDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGNALDKEAAARGTTVYLVGKRI 546 Query: 331 PMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL 390 M+PE+LS+ LCSL V+R C V + + +F+++V+ S +TY + ++ Sbjct: 547 DMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDKRFHKSVIKSKRAMTYEEAQVLI 606 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQ 449 E + K L L+ L K+L K R + G + S E +F ++E +E Sbjct: 607 DDATQQSE----IAKSLRHLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEPLEVEA 662 Query: 450 TQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 Q + + ++EE M+LANI+ A + + E A+ R H KP G ++ Sbjct: 663 KQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPKPPPTNFDPLVKAARYQGFQV 722 Query: 509 PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQS 562 + + M++ + R M QA+Y E H+GLA Sbjct: 723 DTETGLVLSHSLDKCVKEDNPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYGLAAPI 782 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRY D+ +HR + + + + +L + + + Sbjct: 783 YTHFTSPIRRYSDIMVHRLLAASIGADSTYAQLLERKSN--------EELCHNLNYRHKM 834 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND-- 680 A A R F + + +G + V V + ++G +++ + + Sbjct: 835 AQYAARASVGLNTHLFFRGKEEDE-EGYVLFVRKNALQVLIPKYGLEGTLYLKTDKDGKD 893 Query: 681 ---------YYRFDQVGQRLMGESSGQTYRLGDRVEVR--VEAVNMDERKIDFSLISS 727 + F++ + D V VR +++ N+ K+ F L+ Sbjct: 894 GVERTKSEVIFTFNEEDH--TQRCGNVVFHSFDPVSVRLSLDSSNVQHEKLVFRLVKP 949 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 164/728 (22%), Positives = 292/728 (40%), Gaps = 76/728 (10%) Query: 79 PERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR-- 133 ++ +L++G RD + G +RVE ++ + + + + GD V + L Sbjct: 237 IKKGELLQGAFFASRDNFLEGNVRVESIEEPVLIQGRLNLNRAVDGDVVAIKLLPKSEWK 296 Query: 134 -------------------------------KGRREARIVRVLVPKTSQIVGRY----FT 158 A +V ++ K Q G Sbjct: 297 CPSGVVLVDEQAVDNEAVETADPEFEQEDGADRVPTATVVGIIKRKWRQYCGILAANPMA 356 Query: 159 EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM 218 + + D + I I Q + +VV + P +G V LG Sbjct: 357 SSTRHLFIASDRNIPR-IRIETRQSAQL-ITQKIVVAIDYWPRHSKYPIGHFVRALGGIG 414 Query: 219 GTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 ++ L H++P+ + ++ Q+ L V E RVDLRD+ + ++D Sbjct: 415 EKDTENEVILLEHDVPHGSFSAEIQSQLPKLPWTVDPEEYRKRVDLRDITICSVDPPGCT 474 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA++ + G + V IADV+++++P TPLD+EA R T+VY + I M+P+VL Sbjct: 475 DIDDALHARRLDNGNIEVGVHIADVTHFIKPGTPLDKEAGLRATTVYLVDKRIDMVPDVL 534 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR 397 S+ LCSL +RL C + + KF+++V+ S A LTY + I+ Sbjct: 535 SSNLCSLRGGEERLAFSCIWELDDGANIINTKFHKSVIKSKAALTYQEAQLIIDDPTQTN 594 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAH 456 + + L L+ L K+L + R + G + S E +F ++E + + D + Sbjct: 595 QT----AQSLRLLNKLAKILKRRRIDNGALVLASPEIRFNIDSETHDPIDVVAKKLLDTN 650 Query: 457 KLIEECMILANISA-ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 ++EE M+LAN+S A+ + E A+ R H P + + G ++ Sbjct: 651 SMVEEFMLLANVSVAAKIQSEFPECAMLRRHPCPPDANFDPLKKAASYQGFQIDTSCGKN 710 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSP 569 +L + +L+ + R M QA+Y + H+GLA Y HFTSP Sbjct: 711 LATSLDLAVKPDNPYFNTLLRILATRCMMQAVYFISGTIQQQEYFHYGLASPIYTHFTSP 770 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRY D+ +HR + + + + + QL + + R A A R Sbjct: 771 IRRYADVIVHRLLAACIGADATYPALLDKQASS--------QLCNNLNYRNRMAQYAGRA 822 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 F D+ + +G I V V + ++G ++V+ +N+ + D Sbjct: 823 SVALHTHLFFRDRTEDE-EGYILFVKKNAIQVIIPKYGLEGTIYVAGKNNEKLKKDGPSF 881 Query: 690 RLMGESSGQT-----YRLGDRVEVR--VEAVNMDERKIDFSLISSERA-----PRNVGKT 737 E+ Q+ + D + VR +++ N+ +++ F L++ P G T Sbjct: 882 VYNEETQTQSCGDVEFHAFDPITVRLSLDSTNVQHQRLVFELVTPYIEGFSVPPLESGST 941 Query: 738 AREKAKKG 745 AK+ Sbjct: 942 NGAAAKRK 949 >UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=A9UUC9_MONBE Length = 951 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 154/700 (22%), Positives = 284/700 (40%), Gaps = 69/700 (9%) Query: 83 DLVKGTVIGHRDGY--GFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR------ 133 LV+GT+ R+ F++ + + +++ M + GD V Q L + Sbjct: 232 KLVQGTLRISRENTQEAFVKPRDDPEHPVFVPGNLMNRAVDGDLVALQILPESQWQTPSG 291 Query: 134 ---------------------------KGRREARIVRVLVPKTSQIVGRYFTEAGVG--- 163 + +R ++V ++ + G + Sbjct: 292 IIERPEGTHLVMDGTQDAEGELEDMQERTQRTGQVVGIVRRRWRPYCGILAANSNTASPN 351 Query: 164 -FVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGM 222 F+ I Q +G +V+ + PT +G +V VLG Sbjct: 352 LFLFTAKEATLPPIRF-RSQQPDKLVGQQIVLAVDGWPTNSKYPIGHLVRVLGPIGDVNT 410 Query: 223 AVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 ++ L H +P+ + +AV + E+ + R DLR L + +ID D DD Sbjct: 411 ETEVVLLEHAVPFEPFSKAVLDCLPDATWLAAEQDLSRREDLRHLEVCSIDPPGCTDIDD 470 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 A++ G + + V IADVS++++P+T LD+EA RGT+VY ++ I M+P +LS+ L Sbjct: 471 ALHLRDLPNGHFEVGVHIADVSHFIKPNTALDQEAAKRGTTVYLSNRRIDMVPGLLSSNL 530 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA 401 CSL +R C ++ + + +F ++++ S A L Y++ + + D Sbjct: 531 CSLRGGEERFAFSCIWEMTDQADIISTRFCKSIIRSRAALEYSEAQARIDDETD----QT 586 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIE 460 L + L+ L K++ + R E G + S E +F + E ++ Q +D + L+E Sbjct: 587 TLTDSIRRLNALAKIVKRRRIEAGALMLASPEVRFRIDTETHDPVDVQMKQLHDTNSLVE 646 Query: 461 ECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+LAN+S+AR + K A+ R H P G+ L + E Sbjct: 647 EFMLLANVSSAREIHKQFPTCAVLRRHPAPPPSNFEPLLKAAEAAGVTLSTTSSKELAVS 706 Query: 520 AELLESVADRPDAEMLQTMLLRSMKQAIYDPE------NRGHFGLALQSYAHFTSPIRRY 573 ++ + +L+ + R M A Y GH+GLA Y HFTSPIRRY Sbjct: 707 LDMAQPEGQPYMNTLLRILATRCMLPAQYFCSGTVPQTEFGHYGLASPIYTHFTSPIRRY 766 Query: 574 PDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADW 633 DL +HR + + + + + +++ + + + R+A A R + Sbjct: 767 ADLLVHRLLAACIGADPTYPDLL--------NKDKIASICDNLNFRNRQAQYAARSSLEL 818 Query: 634 LKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND--YYRFDQVGQRL 691 C F + + + I V V + ++G V+ + D +D+ L Sbjct: 819 HTCLFFKKRTTHE-EAYIIRVRKNAIAVLVPAYGLEGRVYFDAADGQAPELSYDENKMAL 877 Query: 692 --MGESSGQTYRLGDRVE--VRVEAVNMDERKIDFSLISS 727 + R+ D+V+ V+V++ + ++ L+ Sbjct: 878 TVTKDDQHINLRVFDKVKVQVQVDSSDPQREQMLVRLVEP 917 >UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Zam n=2 Tax=Synechococcus elongatus RepID=Q5MZZ6_SYNP6 Length = 748 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 189/736 (25%), Positives = 324/736 (44%), Gaps = 40/736 (5%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLR---RRLRAMERDGQLVFTRRQCYALPERLDLVK 86 K + +L +L E E++ L+ L A+ER G L R Y E + V+ Sbjct: 13 SEGKFVAPKQLEKKLGCEDEDKSRKLQIILDALDALERLGLLTKDR-GKYRRNEENEWVE 71 Query: 87 GTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLG-ADRKGRREARIVRV 144 + G+ F + +D+Y+ Q+ +GD+VL L R+ E + + Sbjct: 72 ARLRCSSKGFCFAIQDAEDAEDIYIREHQLNHAWNGDRVLVNVLREGSRRRSPEGEVKLI 131 Query: 145 LVPKTSQIVGRY-FTEAGVGF-VVPDDSRLSFDILIPPDQI-MGARMGFVVVVELTQRPT 201 L S ++ R G GF VP D RL ++ + + + + A + V + + P Sbjct: 132 LERANSSVLARITEKAEGEGFRAVPLDDRLLCELDLESNGLDLAANRDHLASVAVQRYPL 191 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 + VGK+ ++LG + + VD+ H +P W +A + L + A GR+ Sbjct: 192 AQLPPVGKVTQILGSDPESASPVDLIRCKHNLPADWSEAAIAALTDLAQTADANAIQGRL 251 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLR + V I +D+R D A+ + GGW++ V +V+ Y+ + LD EA+ G Sbjct: 252 DLRSVFTVAIAADDSRPLDVALSLQPGESGGWQVMVHTVEVAPYLPLQSDLDLEAQRHGI 311 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 + +P LP VL+ G+ DR + + V + G + Y+ +++ L Sbjct: 312 DLRLGETALPFLPPVLTQGVGRFAVGEDRRAVSLLIRVDATGAVQDYELQPSLVQLDQVL 371 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 + + +L + E +K L+EL + + R ERGG FE I N E Sbjct: 372 SPAEATDLLADSKAKGEG----IKALKELQTIADLWRTQRRERGG--FELTVTPAIGNDE 425 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 + I ++ ++E +I AN ++ + P L+ P +I + + Sbjct: 426 GALGVISRSPA--IAGAVQEILIQANRLVTEHLQALELPVLYVGQRSPDLGSIQDAQRLA 483 Query: 502 AELGLELPGGNKPEPRD---YAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 A LGL + + +L ++ A +L +LL++ K + Y HF L Sbjct: 484 AGLGLAIEVDENETELNRLALQQLSDATQTSELASLLDHLLLQTFKPSFYSTLAVPHFSL 543 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE----------TGGYHYS--- 605 L++Y HF +P +RY DL L R I L + + + + ++ G ++S Sbjct: 544 GLETYGHFVAPSQRYADLWLQRVILALFQQGRDRRSSRSKEGVNIRHSSSHGQINWSVLP 603 Query: 606 -------MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 ++ L Q S AE+RA EA+ D K +G F GVI V +G Sbjct: 604 PEVQTELETDLKLLAQQLSEAEKRATEASADYQGLQKAAAAKACIGQTFAGVIRGVQSYG 663 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FFV+++ L ++GLVHVSS +D+Y + QRL+G + + + LGDRVEV + V+ + Sbjct: 664 FFVQIEALQVEGLVHVSSPKDDWYEYRSRQQRLIGRKNRRQFGLGDRVEVEIRNVDYYRQ 723 Query: 719 KIDFSLISSERAPRNV 734 +ID ++ A Sbjct: 724 QIDLGVLPLPEAQSET 739 >UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PF93_USTMA Length = 1423 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 158/594 (26%), Positives = 253/594 (42%), Gaps = 43/594 (7%) Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 L +P A K +++A RV S + + + P D R+ I IP DQ Sbjct: 713 LLRPSSAATKEKQQAE--RVQREGASALAPEVKPRPKIIWFRPTDKRVPL-IAIPADQAP 769 Query: 185 G---ARMGF------VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT--HEI 233 A G + V + + P G +VE +G L+ Sbjct: 770 EDFWAEEGQESFNSRLFVACIKRWPITSLHPFGALVEEIGVIGNVEAETQALLKDTLSSA 829 Query: 234 PYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 + + + + L ++PE+ R D R + TID E A+D DDAV+ + G + Sbjct: 830 TEAFTEGALKCLPPLPWKIPEKEYKTRRDFRSHRVFTIDPETAKDLDDAVHVVRLDNGNF 889 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 + V IADVS++V+ + LDREAR RGTSVY + IPMLP LS LCSL P V+RL Sbjct: 890 EVGVHIADVSHFVKLGSSLDREARKRGTSVYLVQRAIPMLPPTLSEELCSLVPNVERLAF 949 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA-----PLVKHLE 408 T++ ++ F ++++ S A+L Y +++G Q +E+ + + Sbjct: 950 SAVFTMNKDAQVISSWFGKSIIKSCAKLAYADAQKVIEGGQLSKEKLEAHRPKEIGDDIL 1009 Query: 409 ELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANI 468 LH L + + R + G + ++ + F + DAH+LIEE M+ AN+ Sbjct: 1010 ILHQLAQKMRARRFKTGALRIDNVKLSFKLDENGLPTDASVYCSYDAHRLIEEFMLQANM 1069 Query: 469 SAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA 527 + A + E AL R H+KP + F +G ++ + L + Sbjct: 1070 AVAQQIAAGLPELALLRRHEKPLDRRLDGFLRRAKSMGYDIDTSSGG---ALHRSLAKIK 1126 Query: 528 DRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 D + LQ ++ +SM QA Y D H+ L + Y HFTSPIRRY DL +HR Sbjct: 1127 DDSARQALQALVTKSMMQAKYFCTGMVDIAKYHHYALNVPLYTHFTSPIRRYADLMVHRQ 1186 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC----D 637 ++ +L E + E M ++ Q C++ + A A A C D Sbjct: 1187 LEAVL----------VEQDKFGVDREAMAKIAQQCNVKKDAAKMAQEQSAHLFLCLLIHD 1236 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 + V + V F V + + I+ VHV + + + +D+ L Sbjct: 1237 LTMRYGPVVRSATVMGVLDAAFDVIVPEFGIEKRVHVDQMPIENHTYDEQTNAL 1290 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 169/638 (26%), Positives = 301/638 (47%), Gaps = 26/638 (4%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 + + I F + + + + GD V+ + + + R ++ Sbjct: 3 KIFESKFICKNKRIAFAYTDNNEK-VLIRDINFNNAFDGDTVIVEIIDNE---RLIGKVN 58 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 +++ + S G +++ + S I+ + + + G ++ + Sbjct: 59 KIVKRQDSPYFGNVILCKRNKYIIRLNR--SDLIVTTTTKKINIKHGDILSFNIDYTTLN 116 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 + I+ G+ + ++ L I + ++++V ++ E RVD Sbjct: 117 KDDIKVNILNNFGNINNSDNILNSLLDASNISKGFLNEIKKEVVEIRRPNVSEELKYRVD 176 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 LR +TID A+D DDA+Y EK+ + L+V+IADVSY+V+ + LD EA RG S Sbjct: 177 LRHQKTITIDDISAKDLDDAIYLEKEEN-HYILYVSIADVSYFVKEYSKLDFEAAKRGNS 235 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 +Y QVIPMLP+ LSN LCSLNP D+L ++ G+L F+++++ SH RL Sbjct: 236 IYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIESDFFKSIIKSHHRLN 295 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 YT V + + + Y L LE L K+L K + ++G I+F E K I + Sbjct: 296 YTDVNKMFDNND---KSYPILWDMLE----LSKLLRKQKNKKGMINFNIPEIKLILDENG 348 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I+ I + + +LIE M+ AN + A ++ PA++R+H+ P + + S L Sbjct: 349 DIKEISKRISGLSQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLNKKLN 408 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 LG + P A++++ ++ ++ ++ +L++MK+A Y EN+GHFGLAL + Sbjct: 409 ILGYNINNVMDIHPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGLALDN 468 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRY DL +HR +++ L ++ T EE + +H S ER Sbjct: 469 YLHFTSPIRRYSDLIVHRMLQFTLNNKK------ISTKYIDKKKEEYKLIAEHISKTERV 522 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A+ +D D+M + VF+ IS + F++LD+L S Y Sbjct: 523 AERLEKDSIKLKLLDYMKKHLNEVFEARISGIIRGKIFLQLDNLIETVFYDNISSK---Y 579 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 D L+ ++ G + +GD+V++++ ++ + +I Sbjct: 580 IIDD---ALLIDNKGNKFNIGDKVKIKIIKLDYERIEI 614 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 180/508 (35%), Positives = 270/508 (53%), Gaps = 17/508 (3%) Query: 216 DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA-GRVDLRDLPLVTIDGE 274 D +I + + +P +P+ ++ L + + R+DLRD+ VTIDG Sbjct: 109 DINNAKKDAEIIAKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGA 168 Query: 275 DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLP 334 D++DFDDA+ EK ++L + IADVS++V + LDREAR RG SVY V PM P Sbjct: 169 DSKDFDDAISIEKL-NDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFP 227 Query: 335 EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ 394 LSNG+CSLN V R M +T+ +KG + F+++V+ S RLTY +L G Sbjct: 228 HELSNGICSLNEGVSRFTMTVFVTIDNKGNVKESTFHKSVIKSSRRLTYDYAQDVLDG-- 285 Query: 395 DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 + + LV+ L+ ++ K+L + R + G I F E + I + + +R + Sbjct: 286 -IEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKE 344 Query: 455 AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP 514 HK+IEE M++AN A+ + K + +++R+HD P E + +F + G L Sbjct: 345 THKIIEELMLIANCEVAKRL-KNIKGSIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDADG 403 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 D+ +ES+ +PD ++L T+LLRSMKQAIYD N GHFGL + Y HFTSPIRRY Sbjct: 404 NL-DFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYT 462 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL HR +K L + + Q CS ER A E R + Sbjct: 463 DLLTHRLLKQSLEGVNNLKPTMQQ---------FYTNSAQWCSKTERIAVECERSLDKVK 513 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 FM D+VGN + G++S +T FG FV ++D I+GL+ ++L + +YR+D+ Q E Sbjct: 514 AARFMKDKVGNEYNGIVSGITNFGMFVEIEDRGIEGLIRYATLKS-HYRYDEHEQAAYSE 572 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + Y LGDR+ + V V++ E IDF Sbjct: 573 EDAKWYTLGDRIRIVVYKVDVKELFIDF 600 >UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=11 Tax=Embryophyta RepID=D1HK82_VITVI Length = 937 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 159/713 (22%), Positives = 274/713 (38%), Gaps = 92/713 (12%) Query: 86 KGTVIGHR-DGY-GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR--------- 133 +G + +R + + ++ E D++ + M GD V + L D+ Sbjct: 238 QGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSI 297 Query: 134 --------------------------------KG------RREARIVRVLVPKTSQIVGR 155 G R R+V ++ G Sbjct: 298 ADEEDEEEEDVHLVPSSADDAPRNTDLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGS 357 Query: 156 YFT----EAGVGFV----VPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 G V D R+ I I Q+ + ++V + Sbjct: 358 LEPMPMPAGNGGIAHALFVSKDRRIP-KIRIQTRQLGNL-LDKRIIVAVDSWDCLSRYPS 415 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAG--RVDLR 264 G V +G+ ++ L ++I + V + L V E A R+DLR Sbjct: 416 GHYVRTIGEIGDRDTESEVVLIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLR 475 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 + + ++D +D DDA++C G + + V IADV+ +V P TPLD EA RGTSVY Sbjct: 476 HVCVFSVDPPGCKDIDDALHCTTLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVY 535 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 + I MLP+ L+ +CSL V+RL ++ + + K+ ++++ S A L+Y Sbjct: 536 LVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPQAEIISTKYTKSIIKSCAALSYI 595 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 + D PL L ++ L KV+ R ERG ++ S E KF + E Sbjct: 596 EAQA----RMDDSRLMDPLTMDLRNMNALAKVMRLRRIERGALTLASAEVKFQIDTETHD 651 Query: 445 E-RIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I Q +A++++EE M+ AN+S A ++ +L R H P+ E + A Sbjct: 652 PLDIGMYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTREMLEPLLRTAA 711 Query: 503 ELGLELPGGNKPEPRDYAELLESV--ADRPDAEMLQTMLLRSMKQAIY------DPENRG 554 +GL L + + A+ L+ D ++++ + R M QA+Y P Sbjct: 712 AVGLNLDVSS---SKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFH 768 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 H+GLA Y HFTSPIRRY D+ +HR + L + ++ Sbjct: 769 HYGLAAPLYTHFTSPIRRYADVIVHRLLAASLG--------LYKLPTIFQDNAQLTSTAD 820 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 + + R A A R + + + + + I + GF V + I+G V++ Sbjct: 821 NLNYRHRNAQMAGRASVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKYGIEGPVYL 879 Query: 675 S---SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + + D+ Q++ +Y + V + +E V + L Sbjct: 880 TPRGEKGGGEWVVDEQQQKVKKMDGSISYSVLQTVMIHMEVVEPQPNRPKLEL 932 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 180/655 (27%), Positives = 303/655 (46%), Gaps = 25/655 (3%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 A+ E + GTV +GF+R+ D +L E+M+ + GD+V D+K + Sbjct: 16 AIHESKEYATGTVASTNGRFGFVRLTDG-RDAFLDPEKMQFVLPGDEVKILVTTNDKK-Q 73 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 EA I +++ + VG Y + F VPDD +++ I IPP G + G + ++ Sbjct: 74 LEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPPKSRKGCKEGEKIAAKI 133 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 Q P + KA K++E +G + + +++ + ++Q+ ++ + E Sbjct: 134 IQHPAQDGKAQAKVIERIGQPDDHHIEYKYTVAKYDLSPWNKEGEDEQLKKIRASIEAEE 193 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R D LP VTID RD DDAV+ ++ G L VAIAD + ++ P +PL + A Sbjct: 194 FGEREDYTQLPFVTIDSPTTRDMDDAVHI-AEQDGKTVLTVAIADPASFIAPGSPLAKLA 252 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 + S Y +IPMLPE L+N SL R +VC +T+++ G + YKF AV+ Sbjct: 253 ERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLANDGAVEDYKFERAVIQ 312 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S +L Y +V L+G ++ A ++ +L L + + R E I + + Sbjct: 313 SKYKLNYQQVAEFLEG-TNIEGLPADAADNISKLSELATLRYQYRTEHNLIGQDQLDYDI 371 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + +I I R AHKL+EE M+L N A F+ + K L +H + I Sbjct: 372 RLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNKL-GLHTVHGGFRLDRIGE 430 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 ++L E + P G+ E +L+++++ L L R M+ A E H Sbjct: 431 VNALLKEEQIT-PEGDITELEGNLQLIKALSANERQRNLIPALRRMMQSAELSDEAGPHM 489 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 G+ + YA TSPIRRY DL H AI +L + + + + Sbjct: 490 GMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQL--------------ERL 535 Query: 617 SMAERRADEATRDVADWLKCDFMLDQ-VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 + +A R++ WL C ++ +G +G + VT GF VRL + +DG + Sbjct: 536 KETLQAGRQADREIYQWLLCQYVEASLIGFEGRGKVRIVTQQGFGVRLIENGVDGFIAFP 595 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 + +FD L +G TYR V+V+V +V+ ++R+I ++L+S + Sbjct: 596 K--SQEKQFDAKRMTLT--VNGVTYRADCEVDVKVVSVDQEKRRIAYALVSPDAE 646 >UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 Tax=Entamoeba RepID=B0EIJ5_ENTDI Length = 901 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 157/704 (22%), Positives = 277/704 (39%), Gaps = 74/704 (10%) Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVE---GRKDDLYLSS-EQMKTCIHGDQVLA 126 T+ + L LV+G+V +R + F K+++ +S E + + GD V Sbjct: 214 TKEEITRLISEKKLVQGSVRMNR--FNFKEATVYTTEKEEILVSGLEDINRAVEGDIVAL 271 Query: 127 QPLGADR-------------------------------KGRREARIVRVLVPKTSQIVGR 155 Q L D+ +G+ +IV ++ + G Sbjct: 272 QILPKDQWKKESNTINDDYEKNEKEMNNTVHMENAMEVEGKPTGKIVGIIKRNWKPLPGY 331 Query: 156 YFTEAGVGF-----VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 E+ + +P D R I I ++V + T G Sbjct: 332 IKQESSGNYSTNLLFLPTDKRFP-PIRIKARDPAKLAS-QRILVLIDAWDTTSKYPTGHY 389 Query: 211 VEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 V LG+ + L HEIP Y +P+ V + + L E+ ++ GR D R + Sbjct: 390 VATLGNVGDKASETEAILELHEIPHYEFPEIVLKCLPLLPFEITDDYLKGRYDFRKENVC 449 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID D DDA++C+ G + + V IADVS +V+P T LD EA RGT+VY + Sbjct: 450 SIDPPGCTDIDDALHCKILPNGNYEIGVHIADVSCFVKPHTALDEEAAKRGTTVYLADRR 509 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 I MLP+ L+ +CS+ D L + + +++ ++ S+ Y + + Sbjct: 510 IDMLPKPLTEVICSITQNTDTLTFSVVWELDKNANVINCTYHKGIVHSYRAYAYGQAQAV 569 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQ 449 + + E + L + L K L + R + G + S E K + + +++ Sbjct: 570 IDDKSNQSE----YAQQLRVMLMLSKKLKQKRIDAGALMLASSEIKIEKDEQFNPIGVKE 625 Query: 450 TQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL 508 Q + + ++EE M+LAN+ A + + A+ R H P +VL G L Sbjct: 626 YQTYETNSMVEEYMLLANVWVAKKIYDAFPHCAMLRRHPPPDEHTFEWLANVLKHKGKSL 685 Query: 509 PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQS 562 + + + + D +++ ++ R M+QA Y H+GLA + Sbjct: 686 DFSSSKALSESLDKCGTNEDPVVGRIMRILVTRCMQQAKYFSSGYFSYNEFRHYGLAAEI 745 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRY D+ +HR + + +Q S E+M ++ + + Sbjct: 746 YTHFTSPIRRYADVMVHRLLAQAIGFDQI---------DLTMSKEKMKEIADNINHRHTM 796 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A A R F+ D+ V G + V G V + ++ +V + Sbjct: 797 AQHAGRASTQMYTLIFLKDKEVTV-DGYVIKVMKNGIVVNIPQYGLEVIVLIDQKYG--M 853 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 FD+ L + + + DRV+ V +++ +F L Sbjct: 854 VFDENENTLGNMNIK--FGVFDRVK-GVLSIDKSN---EFQLKP 891 >UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NYF6_PHYIN Length = 1079 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 156/691 (22%), Positives = 268/691 (38%), Gaps = 67/691 (9%) Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIV--------GRYFTEAGVGFVVPDDSRLSF 174 QV A + + R+V ++ + G +G VVP D ++ Sbjct: 397 QVALVQSDASQHAKPAGRVVGIIQRNWRKFCCSLEAPRDGVTLNASGSCLVVPVDRKVP- 455 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 I I Q A M V+V + P +G V LG + L H+IP Sbjct: 456 KIKIQTRQ-QEALMDKRVLVAIDSWPAYSKFPLGHYVRTLGVIGDKETETTVLLLEHDIP 514 Query: 235 YI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 + V + + ++ E +GR DLRDLP+ +ID + +D DDA++ + G Sbjct: 515 CDQFSDEVMRCLPAEDWKITPENASGRRDLRDLPVCSIDPPNCKDIDDALHAKLLPNGNL 574 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 ++ V IADV+++V P + LD EA +RGTS Y + + MLP +L+ LCSL D Sbjct: 575 QVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDVEDHFAF 634 Query: 354 VCEMTVS----SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ--------------- 394 + S ++ +F ++++ S A L+Y + L + Sbjct: 635 SVLWELQLVGQSDVQVVDVQFCKSLIRSVASLSYQQAQEFLDDPEAGGVYGQDSTLKKKK 694 Query: 395 -----DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIE 448 + E+ L ++ L+ + L R E G ++ S E +F+ + E + ++ Sbjct: 695 KGESDEQFERRQLLGSGIKTLNTIATRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQ 754 Query: 449 QTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 D + L+EE M+LANI+ A+ V ++ R H PS S +G+E Sbjct: 755 MYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVE 814 Query: 508 LPGGNKPEPRDYAELLES-----------VADRPDAEMLQTMLLRSMKQAIY------DP 550 L + +D + + A+ ++L+ M R M A Y P Sbjct: 815 LHVDTSKQLQDSLDAADKEAAGSKRKHGDKANPYFNKLLRIMTTRCMMPASYFSSGEVAP 874 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 H+GLA Y HFTSPIRRY D+ +HR + + Y + + Sbjct: 875 PEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIG--------VAPLPSYLENKSHLH 926 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 ++ + A A R + VI+ V G V L I+G Sbjct: 927 EISDQLNRRHHAAQLAGRASVTLHTVLYFQQYPTRT-DAVITKVKNNGVGVLLPRFGIEG 985 Query: 671 LVHVSSLDN----DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ + D D +FD L + ++ DRV V+V + + + Sbjct: 986 MIFLCGKDEQDDQDVVKFDGARHTLTLVQKSRKLQVFDRVRVKVYVALTFGNRQELKMDL 1045 Query: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 + K+ +A + ++++ Sbjct: 1046 LDEDDDEDDNQEDAAQKEAEANLRAARKKRK 1076 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 179/662 (27%), Positives = 309/662 (46%), Gaps = 25/662 (3%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 +L + D+ +GT+ +GF+ ++ ++ +L EQ+ + D+ A+ + KG+ Sbjct: 16 SLVAQKDIAQGTIRTTTKRFGFILLDDGRE-AFLDPEQILRVLPEDRAEAEIT-TNAKGQ 73 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 EA++ ++L + VGRY ++ FV PD + + +PP G G +V ++ Sbjct: 74 YEAKLTKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQDRKGLTEGDLVHCQV 133 Query: 197 TQRPTR-RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + P KA I++ LG+ G+ A+ ++P WP A + Q + + P Sbjct: 134 ARHPFHCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPAAQNQASSIHWS-PLV 192 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 + DL LP VTID E RD DDAV + G W L+ AIAD + ++ +PL++ Sbjct: 193 FENNEEDLTQLPFVTIDSESTRDMDDAVCIQATEHG-WELFSAIADPTKHIDFDSPLEQA 251 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 AR R ++ Y + MLP LS SL + R +VC + + + G + + F EAV+ Sbjct: 252 ARERASTHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIRNDGHIESFAFSEAVI 311 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S +L+Y V+ L + L L L + + R++ + E + + Sbjct: 312 RSRQKLSYQGVYDFLTTAAETNLS-DELRTQLTMLRDFALARSQYRQQHNLLMEEKPDYQ 370 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 FI N +++IER+E+ R AH+++EE M+ N+ A + +F H E + Sbjct: 371 FILNEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGYGIFSGHIGFRPERVN 430 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVA----DRPDAEMLQTMLLRSMKQAIYDPE 551 +++ E +L G+ + +D+ L + P L ++L R ++ E Sbjct: 431 DAVALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALHSLLQRQLQAGALSQE 490 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 HFGL +YA TSPIRRY D H IK LL E +++ +++ Sbjct: 491 PVPHFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEP------------PLALDNLVE 538 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 + +A R WL C +M +G+V G I+ V G VRLDD ++G Sbjct: 539 FVERLQHKLNLGRQACRFTETWLACQYMNQHIGSVHTGNIALVNSTGIGVRLDDWGMEGF 598 Query: 672 VHVSSLDNDY-YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 + + D+D +FD L +G TY+L + V+V ++ V++ +R++ SL+ A Sbjct: 599 IPLVPRDSDIKAQFDSRRLSL--NVNGNTYKLDEVVQVVIDEVDVSKRRVALSLVDEATA 656 Query: 731 PR 732 R Sbjct: 657 AR 658 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 188/655 (28%), Positives = 305/655 (46%), Gaps = 39/655 (5%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG-----ADRK 134 + + +G V G + +GF+ + ++ ++L+ ++M GD V D+ Sbjct: 19 DSKEYAEGIVKGTQRKFGFVVLADGRE-IFLNPDEMTKVFPGDNVKILITTEQSKTKDKN 77 Query: 135 GRRE--ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 + + + +L + GRY + FV PD +L+ I IPP A G + Sbjct: 78 AKPKVSGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNRWIFIPPAARKNAAAGDYI 137 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 +L++ P K KI+EV+G+ G+ + ++ +W E+ +A + Sbjct: 138 RCKLSRHPYPNEKPQAKILEVIGNLEKKGIETEYVTSKFQLDPVWKDNWEESLADI---- 193 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + R D++D+P VTID RD DDA+Y K G WRL VAIAD ++ ++ L Sbjct: 194 ---DFSQRKDMQDIPFVTIDAASTRDMDDALYVSKSDNG-WRLLVAIADPGAFIISNSEL 249 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D++ R S Y P IPMLP L+N LCSL P R ++C++ +++ G + + E Sbjct: 250 DKQIAQRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALICQIDINATGDIVSHNIVE 309 Query: 373 AVMSSHARLTYTKVWHILQGDQD--LREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 AVMSS A+L+Y V L D + L +L L L R+E + Sbjct: 310 AVMSSKAKLSYDDVSRFLDQRDDTITSADCSNHGHVLTQLKELSDALLINRKENHLVIPN 369 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 + + + NA +++RIE +N A +++EECMILAN + ++ A+F H Sbjct: 370 RPDLRLVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQILDDD---AIFVSHPGFR 426 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 E + + E L L + +P Y +++S+ D L+ +L R + +A Sbjct: 427 PERVADVCKLAEEQ-LSLTDIDVTQPDGYRHIMKSIDDDALDFPLRAVLSRLLSRARLSN 485 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 + HFG+ L SY FTSPIR+Y DL +HR IK L + + + Sbjct: 486 KRLPHFGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLRGLPPTRCSDEQL----------- 534 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + + + +A + WLKC F+ VG F G +S + GF VR+D+ I+G Sbjct: 535 ---EAIQQRQDNSRQARSQMEQWLKCQFIQPLVGQNFIGRVSQINSNGFTVRIDENLIEG 591 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 V L D Y FD + RL +S T L +E+ V+ V+ D+R I F+L Sbjct: 592 FVETRILP-DKYSFDPMRLRL--KSKTLTIELDQAIEIIVKEVDCDQRSIRFTLP 643 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 181/722 (25%), Positives = 312/722 (43%), Gaps = 81/722 (11%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME------------RDGQLVF 70 I+++L + ++D L + R L+A+ + Sbjct: 579 EIIKYLHSKGYKGTKDTL----------DFVEISRSLKALIYLHSKGYRGTNWELNEPYL 628 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPL 129 + +C L E+ L+KG++ F+++ DL++ E ++GD V Q L Sbjct: 629 SNTECEILLEQGKLLKGSIQVFSRLDSFVKIGDGVKDLHVQGLESRNRALNGDIVAVQLL 688 Query: 130 G--ADRKGRREARIVRVLVPKTSQIVG-----RYFTEAGVGFVVPDDSRLSFDILIP--- 179 ++ +++A +V+++ K +IV Y G + P DS I++P Sbjct: 689 PDQEEKTRQKKAEVVKIIEEKHPRIVPGQVKPYYGHRYGFAIMFPTDSSFPI-IMLPLKN 747 Query: 180 -PDQIMGARMGF---VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-P 234 P + + F + + ++T A GK+V LG++ + ++ + I Sbjct: 748 FPKDFIDRPLDFEKSLFLAKITNWDQNLYYACGKLVSFLGESGSVEAETEAIIKKNLIYD 807 Query: 235 YIWPQAVEQQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 + + + + +P E R DLR + TID ARD DDA+ C+K + Sbjct: 808 TPFSKKCLKTLPQKNTWCIPSEELNKRSDLRKECIFTIDPSTARDLDDALSCKKIADDLY 867 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 + V IADVSY+V+ ++ LD+ A+ R TSVY +VIPMLP +LS LCSLNP VDRL Sbjct: 868 EVGVHIADVSYFVKENSALDKVAQLRATSVYLTQKVIPMLPSILSEDLCSLNPGVDRLAY 927 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-------QDLREQY-----A 401 + S G + KF V+ S +LTY + +++ D + Y Sbjct: 928 SVIFNIKSDGTIINEKFVRTVICSQVKLTYCQAQQLIENQLTDYLITNDFPKIYGGFTLE 987 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER-RIERIEQTQRNDAHKLIE 460 + L L + K L K R G IS+ E F N E+ + + + D++KLIE Sbjct: 988 NIKDSLYTLFQISKNLRKQRHNAGAISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNKLIE 1047 Query: 461 ECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+LAN+S AR E + A+ R H P+ + + L+ G+ + Sbjct: 1048 EFMLLANMSVARKIYEAHPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDLGSN---QSI 1104 Query: 520 AELLESVADRPD------AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHF 566 + LE ++ + + ML + A Y + ++ H+GL + Y HF Sbjct: 1105 NKSLEKLSGLENELKTFLEPAIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTHF 1164 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPD+ +HR + L + + S+E++ ++ C++ + AD+A Sbjct: 1165 TSPIRRYPDILVHRCLTAALDSK----------FAVNKSVEDIKRITDQCNIKKYNADKA 1214 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY-YRFD 685 + + ++ C F++ KGV+ +V + L V+ L Y Y D Sbjct: 1215 SEESSELFFCLFLMQSGSLQEKGVVVAVLNNRVDILCTRLGFVKRVYYQDLPCKYTYELD 1274 Query: 686 QV 687 + Sbjct: 1275 EK 1276 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 177/779 (22%), Positives = 304/779 (39%), Gaps = 106/779 (13%) Query: 12 EKYANPIPSREFILEHLTKREKPASRDELAV-ELHIEGEEQLEGLRRRLRAMERDGQLVF 70 EK N EF+ + ++ + IE E Q + L Sbjct: 177 EKGLNSTTIFEFVKSIKGEYPNLMDFLGISEQAMDIEFEGQQVLFQEHL----------- 225 Query: 71 TRRQCYALPERLDLVKGTVIGHR----DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 T + + DL +G + R DG F+ + + + + +HGD + Sbjct: 226 TLNELSNKVKAGDLFQGKLKIDRNDINDGTVFIPKYDFEIKI-IGQPNLNRALHGDLIAI 284 Query: 127 QPLGADR-----------------------------------------------KGRREA 139 + L + Sbjct: 285 ELLPENEWISSNYMGDNEDEEEDFKNVHEAVKTNNSNKQLEEKYLNVVEKIKKLNLNPTG 344 Query: 140 RIVRVLVPKTSQIVGRYFTEA----------GVGFVVPDDSRLSFDILIPPDQIMGARMG 189 R+V V+ G EA + +P D R + + G Sbjct: 345 RVVGVIKRIQRYFCGEVTPEAINLPNLPSGIELREFIPADGRFPH-FYLRTTNGSQLQ-G 402 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA-- 246 + + +G ++GD+ T D+ L H + Y + + V + Sbjct: 403 KKIQIGFDNWSKSSKYPLGHFKMLIGDSGDTKAEGDVILLEHNVEYRAFSKQVLDCLPPQ 462 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 K ++P+ RVDLR + + +ID +D DDA++C G + + V IADVSY+V Sbjct: 463 DDKWQIPQSEIKKRVDLRGINVCSIDPPGCKDIDDALHCISLPNGNFEVGVHIADVSYFV 522 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 RP T +D+EA+NR T+VY + MLP++L+ LCSL DRL + + Sbjct: 523 RPDTAIDKEAQNRCTTVYLVDRRTDMLPKLLTETLCSLKDDGDRLAFSVVWVMDKDANII 582 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 +++++++ S A L Y K ++ D E L K + L+ L K L + R E G Sbjct: 583 ETRYHKSIIRSVASLNYGKAQSMIDDVNDNSE----LTKSIRNLNMLAKKLKQKRIENGA 638 Query: 427 ISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFR 484 +S S + KF F+ E ++ Q + + LIEE M+L N++ A V ++ R Sbjct: 639 LSLASTQVKFTFDDETHNPVDVQFYQMYETNSLIEEFMLLGNVAVAEKIVSHFPSISILR 698 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 H +P + I +L ++G L + D + + D ++++ M RSM Sbjct: 699 QHSQPKPKQIKELSQILQKIGFNLDYSSNRNLADSLDKVNRPNDHFFNKLVRIMTTRSMN 758 Query: 545 QAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 +A Y D H+GLA Y HFTSPIRRY D+ +HR + + E Sbjct: 759 EATYFCTADADYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLLAAAIDIE--------A 810 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 Y + +M ++ + +M R A A+R +D+ F D+ ++SS++ G Sbjct: 811 IPAYMSNKLKMAKICEKMNMRNRMARFASRSSSDYNTYLFFKDKQIEEV-AMVSSISKTG 869 Query: 659 FFVRLDDLFIDGLVHVS--SLDNDYYRFDQ--VGQRLMGE--SSGQTYRLGDRVEVRVE 711 V + ++G + S L + + Q L+ + +G ++L D ++VRV Sbjct: 870 ATVVVPRYGLEGQIKFSEKDLKENEKLLQELKQNQSLIIDFVVNGNRHKLFDYLKVRVS 928 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 173/777 (22%), Positives = 306/777 (39%), Gaps = 97/777 (12%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRL---RAME- 63 +R Y + + +E+I ++L K A D++A + + L R ME Sbjct: 187 KRMENHYQHVMYLKEYI-QNLEDPGKQALLDQMAAYESSGNGNEKQIFDEYLSHDRIMEG 245 Query: 64 -RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 G + +R +++ R + + T + ++ + +++ ++GD Sbjct: 246 IASGTI---KRGNFSV-SRENYREAT----------VIIDDQLTSWFITGNNCNRAVNGD 291 Query: 123 QVLAQPLGADRKGRRE-------------------------------------------- 138 V Q L D+ E Sbjct: 292 TVAVQLLPEDQWTAPEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKSKKMTVST 351 Query: 139 ARIVRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 A++V ++ + G A P RL I I +Q +VV Sbjct: 352 AKVVGIIKRNWREYCGMLLPSTVKGARRHLFCPA-ERLIPRIRIETEQAETLSQ-QRIVV 409 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVP 253 + P +G V +G+ ++ L H+IP+ + ++V + + E Sbjct: 410 AIDHWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPD 469 Query: 254 EEAKAG---RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 G RVDLRDL + ++D D DDA++C++ + + V IADV+++VRP T Sbjct: 470 LTENRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGT 529 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 +D EA RGT+VY + I MLP +LS+ LCSL + +R C T++S + K+ Sbjct: 530 AIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQSVKY 589 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 +++++ S A LTY K I+ ++ + + L L L KVL+ R G ++ Sbjct: 590 HKSLIKSKAALTYEKAQEIIDDPKEQND----VALGLRGLMKLSKVLNARRTGNGALTLA 645 Query: 431 SEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDK 488 S E +F + R +++ + Q D H ++EE M+LANIS A +E+ + AL R H Sbjct: 646 SSEVRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPV 705 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P E+ G E+ + D + +L+ + R M QA+Y Sbjct: 706 PLKESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVY 765 Query: 549 DP------ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 HFGLA Y HFTSPIRRY D+ +HR + + + G Sbjct: 766 FSAGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSGLL------ 819 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + ++ + + ++A A R + +V +G + V G V Sbjct: 820 --NQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKV-ETCEGFVMGVRNNGIQVF 876 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 + ++ ++ + + D + L + V VR+ +VN ++ Sbjct: 877 VPKYGLESIIVLQTSAASGTTIDVEEMSVKVNGDVVIKEL-EPVTVRI-SVNEKNQQ 931 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 183/650 (28%), Positives = 287/650 (44%), Gaps = 37/650 (5%) Query: 85 VKGTVIGHRDGYGFLR----VEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 V G + H G+GFL G ++ ++ + + D V A GR A Sbjct: 10 VTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATV-SQGADGRWTAS 68 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + +L Q+ G G F+ D S D P + + G VV + + Sbjct: 69 GLSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDW--PLETGTAVQTGDAVVARIVEGK 126 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDI--ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 VL + G+ + + H++ +P V ++ ++ A Sbjct: 127 A-----------VLLHRLEPGVDRSVARIIARHDLRRDFPPEVLEEARAVRGV--PHALG 173 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKK-RGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R DLR LP VT+D RD DDA+ G RL V+IADV+ +V + LDR AR Sbjct: 174 ARRDLRALPTVTVDAPSTRDIDDAISVLPAGEDGALRLLVSIADVAEFVTEGSALDRAAR 233 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY V+PMLPE LS+ SL P +R C+ E+ + ++G +T E+++ S Sbjct: 234 ERGTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHVTAADVSESLIRS 293 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 ARL Y +V L + P+ + + L AR RGG+ EEA+F Sbjct: 294 WARLNYDEVAAYLDRGA-VSAAMEPVREAMPWFRAASARLAVARAGRGGMELAREEARFT 352 Query: 438 FNA-ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 F+A ++ IE T AH+LIE M+ AN + A ++E PA+FR+ D+P + + Sbjct: 353 FDAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEPDRQRVAD 412 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G E G + P A + L+++L RS+ A Y GHF Sbjct: 413 LSAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPALRSVLRRSLGFARYTVVPSGHF 472 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRY DL +HR +K L + QL Sbjct: 473 GLAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDPAV----------EQLAVRL 522 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + + + A +D L+ M VG + I+ V FG ++LD + ++G+V + S Sbjct: 523 NARAKASSRAEQDRHRVLEARLMASHVGKSYPARITRVKPFGLLIQLDGMLVEGVVPMDS 582 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 L +R D L+G+ +++ +G + +V + + +I+F+L Sbjct: 583 LPGGPFRPDARETSLVGKE--RSFTVGMPLMAKVVSTDEVLGRIEFALAE 630 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 167/651 (25%), Positives = 287/651 (44%), Gaps = 44/651 (6%) Query: 100 RVEGRKDDLYLS-SEQMKTCIHGDQVLAQPLGADR--KGRREARIVRVLVPKTSQIVGRY 156 + K+ + L+ ++ + + GD++ + G ++V +L K+ I G Sbjct: 234 ELRNDKETILLNDAKSVNRALDGDKIAVITNPESQWVGGYPTGKVVSILSRKSRVICGTV 293 Query: 157 FTEA------GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 VVP L I I Q+ +G V V + G Sbjct: 294 LPPKVQTNDWQSLLVVPQQENLP-KIRIRSRQVQEL-IGMRVHVAIDSWAINSKYPSGHY 351 Query: 211 VEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 + +G ++ L T+EIP+ + AV + + E R+DLRD + Sbjct: 352 ISTIGQAGNLQAESEVILMTNEIPHDAFSDAVLNCLPPKDFQPTPEEVKRRMDLRDRCVC 411 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID D DDA++ + + V IADVS++VR T +D EAR+RGT+VY + Sbjct: 412 SIDPPGCTDIDDALHYKDIDEETCEIGVHIADVSFFVREGTAIDLEARDRGTTVYLVEKR 471 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK-GRLTGYKFYEAVMSSHARLTYTKVWH 388 I MLP +LS LCS+ ++RL ++ K KF ++++ S A L+Y + Sbjct: 472 IHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKKTAETIDVKFGKSIIKSRAALSYGRAQE 531 Query: 389 ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER-RIERI 447 I++ D E L K + L L K+++K R + G ++ S + F ++E Sbjct: 532 IVEDQNDQSE----LAKGIRGLLALSKIMNKKRMDDGALTLSSPQLHFTLDSETAEPLSG 587 Query: 448 EQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGL 506 E Q + + L+EE M+ ANI A+ + + K+ A+ R H+ P L G+ Sbjct: 588 ELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQSAMLRRHESPIAARFDFLNRALKRFGV 647 Query: 507 EL-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLA 559 +L P NK + E V D + +++ M R M+ A Y EN H+GLA Sbjct: 648 QLNPDTNKSLVETLDGVGEKVKDLDN--IVRIMTTRCMQFAKYFAAGTQSYENFRHYGLA 705 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 + Y HFTSPIRRY DL +HR + + ++ ++ M + ++ + Sbjct: 706 MPIYTHFTSPIRRYADLIVHRQLAAAIGYDKATDMLASKL--------MMQAVAENLNFR 757 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 + A +A R + + + G + +G + + F + L+ ++G VHV D Sbjct: 758 HKMAQDAGRSSSQLFIMEMLRRTPGKIEEGKVIKIKPTVFVILLEQYGVEGHVHV---DG 814 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVR--VEAVNMDER-KIDFSLISS 727 + + +++ + L E G+ + D+V VR V +NM R ++D LI Sbjct: 815 EKWIYNETEESL--EKDGKRICIFDKVRVRVNVTPINMHGRSRLDLELIEE 863 >UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CC06_PARTE Length = 897 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 137/586 (23%), Positives = 255/586 (43%), Gaps = 40/586 (6%) Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 ++V VL G VP D R I + V+ Sbjct: 322 PYGKVVSVLQRTERHFCGHVENN----IFVPADGRYPN--FILKHSKYDTLQDKKIQVQF 375 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVAGLKEE--VP 253 P K + K+ +VLG + ++ L H++ + V + ++ + Sbjct: 376 VDWPVWSDKPLCKLKKVLGKAGDMYIEGNVILLEHQVEIREFSHQVLACLPIEGDKYRIS 435 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E+ R+DLRD+ + +ID +D DD ++C + + + V IADVS++V+P + +D Sbjct: 436 EQEIKRRMDLRDILVCSIDPVGCKDIDDTLHCRRLENNLYEVGVHIADVSHFVKPDSAID 495 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA +R T+VY + MLP++L+ LCSL VDRL + + + KF ++ Sbjct: 496 KEAAHRCTTVYLVDRRTDMLPKLLTENLCSLVSNVDRLAFSVIWIMDDQANIKDVKFGKS 555 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S A L Y + ++ D + L + + L+ L K L + R ++G +S S + Sbjct: 556 VIRSVASLHYQQAQEMIDNPNDNSQ----LTQGIRLLNMLAKKLKQLRTDQGALSLASNQ 611 Query: 434 AKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPST 491 KF F+ E + Q D + L+EE M+LAN S A + +++ ++ R H +P Sbjct: 612 VKFSFDDETHNPSDVRMYQLYDTNSLVEEFMLLANCSVANQILQRFPSISVLRRHQEPKM 671 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 + + + ++ +LG + + + ++ D ++++ + R M +A+Y Sbjct: 672 KQLKELQILMNDLGYQFSFDTSKLLSESLDQIQRPNDSFFNKLIRMITTRCMNEALYVCT 731 Query: 549 ---DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 D H+GLA + Y HFTSPIRRY D+ +HR + + E + Sbjct: 732 ADVDYPELYHYGLAAELYTHFTSPIRRYADVLVHRLLAASIDLE--------SLPPSMSN 783 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 M ++ +M R A A+R +D+ F ++ + + +I+ + V + Sbjct: 784 KIRMTRICDKLNMRHRMARFASRASSDYHTYLFFKNRPQQIDQAIITGILTDKVTVMIPR 843 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 ++G + +D R+ G YR+ D ++V + Sbjct: 844 YVLEGTIDAQIID-----------RMNIIIQGTRYRIFDYIQVEIS 878 >UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54BH9_DICDI Length = 1006 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 161/704 (22%), Positives = 276/704 (39%), Gaps = 93/704 (13%) Query: 83 DLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADR------ 133 L++G Y + + ++ + E + + GD V + + Sbjct: 247 KLIQGIFRTSITNYREATVSNREMEKEILIQGIENINRAVDGDIVAVELFDQSKWNTPST 306 Query: 134 -----------------------KGRREARIVRVLVPKTSQIVGRYFTEAG--------- 161 K + ++V ++ G + Sbjct: 307 LIMLENEGVEEDDDSIAKDSLISKKQPTGKVVGIIKRNWKPYCGAVEFKQDDNNTTTKTS 366 Query: 162 ----VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDN 217 + +P D R+ I I Q+ +G +VV + Q G V+ LG Sbjct: 367 TGLHFLYFMPIDKRIP-KIRIKSRQVSNL-IGKRIVVAIDQWDKNSKYPSGHFVKDLGPL 424 Query: 218 MGTGMAVDIALRTHEIPYI-WPQAVEQQVA--GLKEEVPEEAKAGRVDLRDLPLVTIDGE 274 + L +IP+ + AV + + + + V GR DLR + ++D Sbjct: 425 GDKETESQVLLLQFDIPHHPFGAAVMKCLPSPDIMDRVTSADMVGRKDLRKECIFSVDPP 484 Query: 275 DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLP 334 D DDA++ + G + V IADVS++V+ T +D EA NR TSVY + I MLP Sbjct: 485 GCTDIDDALHIKDLGKGIMEVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLP 544 Query: 335 EVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD 393 LS LCSL VDR C ++ G + ++ ++++ S A LTY + + Sbjct: 545 GELSGNLCSLMSNVDRFAFSCIWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDK 604 Query: 394 QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA-ERRIERIEQTQR 452 Q + +L L++L K+L K R +RG + S + KF +E Q Sbjct: 605 S----QNDQITVNLRNLNSLAKILRKQRFDRGALYLASPQVKFKTEELGGDPSDVEIYQL 660 Query: 453 NDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 + + +IEE M+LANI A+ + K A+ R H P+ A ++ G + Sbjct: 661 RETNSMIEEFMLLANIWVAKKIYKHFPGCAMLRRHPTPNKAAFDLLTKLIENKGYKF--- 717 Query: 512 NKPEPRDYAELLESVADRPD---AEMLQTMLLRSMKQAIYDP------ENRGHFGLALQS 562 + +D A+ L+S D+ D + + M R M A Y E+ H+GLA Sbjct: 718 STTTSKDLADSLDSAVDKNDSYFNTLCRIMTTRCMSPAKYFSSGSLPYEDFNHYGLATDI 777 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPD+ +HR + + ++ + + + L ++ + + Sbjct: 778 YTHFTSPIRRYPDIIVHRLLASAIG---------IQSVSLNLENKTISALTENNNFRHKM 828 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN--- 679 A A+R F + +V I V F V + +G V+VS ++ Sbjct: 829 AQYASRGSTQLHTLIFFKGR-KSVEDAYIIRVKANAFVVLVPRYGFEGTVYVSDPNSSTA 887 Query: 680 ---------DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 + Y ++ Q L + T+R+ D+V V + + Sbjct: 888 TTNGGGGTSNIYNYNHEDQTL--GNGIHTFRVFDKVTVEIYVDD 929 >UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 Tax=Theileria RepID=Q4UH40_THEAN Length = 955 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 154/613 (25%), Positives = 263/613 (42%), Gaps = 57/613 (9%) Query: 140 RIVRVLVPKTSQIVGR---YFTEAGVGFV----VPDDSRLSFDILIPPDQIMGARMGFVV 192 +IV ++ + G E G G+V VP D+R+ F I I + +V Sbjct: 360 KIVSIVNRMRKEFCGSLLPIEGEVGDGYVQRLFVPVDARIPF-ISIETRRSKELENNRIV 418 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE-IPYIWP------------- 238 VE+ + G E+LG + + LR H+ I + Sbjct: 419 -VEVDSWDRFSKRPNGHWTEILGPIDDRNVESTVILREHQVITEDFSLQSYRHLGLITSS 477 Query: 239 ----QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 + E+ ++ E GRVD RD + ++D +D DDA+ C++ G + Sbjct: 478 LVDTSSTEKDEDKSDIKITPELLGGRVDYRDEVVFSVDPPGCKDIDDALGCKRLSNGNFE 537 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 + V IADV+Y+V + LD+EA R T+VY + MLP++L+ LCSL V+RL Sbjct: 538 VSVHIADVTYFVPEGSNLDKEASERCTTVYLVDRRTDMLPKLLTTNLCSLMSDVNRLTFS 597 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLY 414 + G + KF ++V+ S LTY + ++ + L L+NL Sbjct: 598 VYWEMDMNGVILATKFSKSVIKSRRSLTYQQAQEMID-----SSSNDEVSVSLRNLNNLS 652 Query: 415 KVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA-RF 473 K+L K R ERG + ES E KF F+ ++ +E + + ++++EE M+LANIS A + Sbjct: 653 KILRKQRIERGAVELESSEVKFEFD-MSKVLNLESYKTYETNQMVEEFMLLANISVATKI 711 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGL-ELPGGNKPEPRDYAELLESVADRPDA 532 E+ + +L R+H P E + L + + GN + + E++++ + Sbjct: 712 FERFPKCSLLRVHPPPVEEKLNELNRTLQQQNITSFKYGNSKQLNESLEIVKNEKNDKFT 771 Query: 533 EMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 + + R+M QA+Y D + H+GL + Y HFTSPIRRY D+ +HR + L Sbjct: 772 TATKILTTRTMSQALYRNSNDLDEDEFKHYGLCCEYYTHFTSPIRRYADVIVHRLLASAL 831 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 + G + R A +R+ + Sbjct: 832 DLAPLNVNFIQSLSGQ----------CDLLNKRHRNAQWCSRESDKMFSYLYFKQMGDVE 881 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 G++ + V + I+ + +V +Y FD+V + L+ + G ++ D+V Sbjct: 882 CNGIVLDINEDRVVVLTLEYGIEAVANV-----EYKSFDKVNKVLVDLA-GNVLKVFDQV 935 Query: 707 EVRVEAVNMDERK 719 +VR+ N R Sbjct: 936 KVRLYTCNKHFRN 948 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 161/665 (24%), Positives = 275/665 (41%), Gaps = 34/665 (5%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M RD L+ +Q + + V+GTV G G+GFL + + +++ MK +HG Sbjct: 1 MFRDNPLLSQLKQN--MRQNTPSVEGTVKGTERGFGFLEADDG-ESYFIAPPHMKKIMHG 57 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++ A + A ++ K ++ + R V+ D ++ I Sbjct: 58 DRIKAYI--ETNGDKTSAEPDTLVEAKLTRFIARISMTKNKLTVLADSPVINMPIRAKLV 115 Query: 182 QIMGAR--MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 + + G VV +L + ++ + + L ++ Sbjct: 116 GLGKQKVNDGDWVVAQLKSHALKDGSFAAEVTGFVATATDPNAPWWVTLARQDL------ 169 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 + V + + V + R+DL D P TID +D DDA+ EK G ++ VAI Sbjct: 170 --AKDVPAMPDSVEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEGNLKVTVAI 227 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 AD + Y+ + L++ A R +VY P + IPM+P LS+ +CSL R + C T+ Sbjct: 228 ADPTSYIPADSELNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRPTLCCTYTI 287 Query: 360 SSKGRL-TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 G L ++F+ A ++S +L+YT+V + ++ + A L + L+ L + Sbjct: 288 QEDGALAEEFEFFTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQLAEQLQSLATFARHRQ 347 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 + R+ + + + F + + I R A+++IEE M+ ANI+AAR + Sbjct: 348 QWRKNNAIVFPDQPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITAARLFRQNG 407 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 + +F H E I +L E G+E + Y EL ++A++ + L + Sbjct: 408 DVGVFNTHAGFDPEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEKAN-PALDSR 466 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 L R +I HF + L YA +TSPIR+Y D+ HR IK L E Sbjct: 467 LRRMQSYSIISASAERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLTNGSAPSATEDE 526 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTG 656 S R+ A RD++ WL D++ V F+ I V Sbjct: 527 V--------------ILMSERRRQHRMAERDISSWLYVDYLTPAVESKQAFEASIMDVNR 572 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ-VGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G VRL + + S L ++ V + Y LGD + V + +N Sbjct: 573 GGLRVRLLENGAVAFIPASLLHDNKKEVKCLVETGQISIKDQVEYSLGDVIYVNIAEINK 632 Query: 716 DERKI 720 ++R I Sbjct: 633 EKRNI 637 >UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NXM9_COPC7 Length = 1426 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 249/552 (45%), Gaps = 36/552 (6%) Query: 164 FVVPDDSRLSFDILIPPDQIM-------GARMGFVVVVELTQRPTRRTKAVGKIVEVLGD 216 + P D R+ I IP +Q A + V + + P G +VE LG Sbjct: 749 WFKPTDKRVPL-IAIPTEQAPPDFVQNSEAYADKLFVACIKRHPISSLHPFGTLVEELGP 807 Query: 217 NMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGED 275 + L+ P + + V + + + +PE R DLR+ + TID E Sbjct: 808 IGDIEVETSALLKDCNFPTEEFSENVLKCLPPIPWTIPEHEFKTRKDLREERIFTIDPET 867 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 A+D DDA+ + G + + V +ADVS++V+P+T LDR+AR R TSVY +V+PMLP Sbjct: 868 AKDLDDALSVKANEDGTYDIGVHVADVSFFVKPNTALDRDARKRATSVYLVQRVVPMLPP 927 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG--- 392 LS LCSL P DRL T++ + ++ F + ++ S A+L+Y ++++G Sbjct: 928 ALSEQLCSLIPGEDRLAFSVIFTINKEAKVLKKWFGKTIVRSTAKLSYRDAQNVIEGKNF 987 Query: 393 DQDLREQY--APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 D + Y + + + ++ L ++ K L R G ++ ES + +F + + Sbjct: 988 DAPVGGNYNASDIEEDIKVLDSISKKLRAERFNNGALTLESLKLRFTLGEDGLPTDCGEQ 1047 Query: 451 QRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELP 509 +R DA+ LIEE M+LANI+ A + E AL R HD P + +F LG ++ Sbjct: 1048 ERLDANALIEEFMLLANIAVAQQIAVHLPEQALLRRHDSPIERRMNTFLRRAERLGYKMD 1107 Query: 510 GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSY 563 + + ++ D ++L+ + ++ +A Y D GH+ L + Y Sbjct: 1108 ISSAG---ALMKSFNAITDPTARKLLELVSFKATHRAKYFCAGMLDIAKYGHYALNVPLY 1164 Query: 564 AHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRA 623 HFTSPIRRY D+ +HR ++ L + + + + ++ Q C++ A Sbjct: 1165 THFTSPIRRYADVLVHRQLEATLQGGNDVK--------FTMDRDAVAKVAQQCNIKRDSA 1216 Query: 624 DEATRDVADWLKCDFMLD----QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 A A C + D + + +V F V + + I+ VH+ + Sbjct: 1217 ILAEEQSAHLFLCVLISDLATRYGPVIRPAKVINVLDAAFDVLIPEFGIEKRVHIDQMPI 1276 Query: 680 DYYRFDQVGQRL 691 + + +D+ L Sbjct: 1277 ENHVYDEHTHTL 1288 >UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9HELI Length = 716 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 186/727 (25%), Positives = 335/727 (46%), Gaps = 50/727 (6%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSS 112 ++ L + L ++ Y L E+ + G V + GYGF+R + D + Sbjct: 21 AFQKYLELLAHLNVL-KIKKNKYYLLEKFRI--GKVELTKAGYGFVRAFDNTGKDWLVEK 77 Query: 113 EQMKTCIHGDQVLAQ-PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR 171 +K GD VLA+ + + +A+++ VL K S ++ V Sbjct: 78 NLLKGAQKGDIVLAKSLIKHQHSAKIKAKVLAVLQEKVSSVICYLEKYKLDCIAV----S 133 Query: 172 LSFDIL--IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALR 229 + +++ I Q + ++++ R G+I+E+LG + I+L Sbjct: 134 IPNEVVYKINASQKSLKTLPSKTILKINPRN-------GEILEILGTLEDPKIDEIISLN 186 Query: 230 THEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKR 289 ++ + E Q KE V + R++L +LP ID A+D DDAV+ +++ Sbjct: 187 LYDKHESFSLQAEIQAQSFKE-VKIKDFKERINLTNLPFCAIDPVSAKDHDDAVFYDEES 245 Query: 290 GGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVD 349 L+VAIADVS+YV P++PLD EA++RG S+YFP + IPMLP +LS LCSL Sbjct: 246 S---ILYVAIADVSHYVTPNSPLDIEAKSRGFSIYFPHKSIPMLPRILSENLCSLQEGKT 302 Query: 350 RLCMVCEMTVSSKGR-LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLE 408 RL MV ++ + + + + + + AV+ +LTY +V IL Q + PL L Sbjct: 303 RLAMVWKIRLHKRTKAVLSSELFAAVIKVRQKLTYDEVD-ILFETQKSKTIKKPLHSMLF 361 Query: 409 ELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANI 468 L L + L K R ++G F +E + + ++ + ++ +H+LIEECM+LANI Sbjct: 362 ALQELTQKLRKKRLQKG-FDFLGDEVELELDKNLELKSLHFQPQSSSHQLIEECMLLANI 420 Query: 469 SAARFVEKAK-------EPALFRIHDKPSTEAITSFRSVLAELGL----ELPGGNKPEPR 517 +A+ +E+ + ++R+H KP E ++ L LG+ +P + + Sbjct: 421 QSAKLLEQKNSKNDENLKLGIYRVHQKPKQEKLSELFGELRMLGIWRGKAIPKTQESLHK 480 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 E+ + + ++++SM+QA Y N GHFGL ++Y+HFTSPIRRY DL Sbjct: 481 AIIEIQNNAKKAKMQREVDKLIIKSMQQANYASHNLGHFGLGFEAYSHFTSPIRRYSDLI 540 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 LHR +K + ++ E + L + + ER + D D Sbjct: 541 LHRILKSKITLQEDIDYK-----------ESLPMLCDNLNTQEREIMQIEWDFQDRKFAR 589 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSG 697 ++ +G ++G+I + + L D + G V L+ ++ + +++ + Sbjct: 590 YLSKHLGQTYQGIIIN-ESHPILISLTDYPLMG-ARVVGLNGSGVKYQKALVQIIEVNLA 647 Query: 698 QTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT-AREKAKKGDAGKKGGKRRQ 756 T G V+V E + I +++ ++ + K A+E+A++ + K K+++ Sbjct: 648 TTKVYGMVVKVYNEGFDSKNEAISQYIVAKKQNQAKIKKQRAKEEARRIASRAKRHKKQK 707 Query: 757 VGKKVNF 763 K+ Sbjct: 708 FHKRRKR 714 >UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KND9_9ALVE Length = 982 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 154/651 (23%), Positives = 266/651 (40%), Gaps = 69/651 (10%) Query: 123 QVLAQPLGADRKG--RREARIVRVLVPKTSQIVGRYF--------------TEAGVGFV- 165 +VL + G +E R+V ++ + G + G G + Sbjct: 300 RVLEEESTTPEGGIIEKEGRVVGIIKRNWREYAGTLRPIQQEEEEQPQQGDKQHGGGMIG 359 Query: 166 --------VPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDN 217 +P + R+ I I + V + G +LG Sbjct: 360 YSKIERIFIPANPRIPN-IRIVTKHSNDL-DNMRICVVMDTWDRTSRLPQGHWSRILGRC 417 Query: 218 MGTGMAVDIALRTHE-IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA 276 + L H I + V + + + EE + R+DLR++ + +ID Sbjct: 418 GERDTESSVILHEHNVITRDFSDDVMRCLPPKDFQPDEEEISRRLDLRNVTVCSIDPPGC 477 Query: 277 RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEV 336 +D DDA+ CE G WR+ V IADV+++V P+T +D+EA R T+VY + MLP + Sbjct: 478 KDIDDALSCEVLDNGNWRIGVHIADVTHFVHPNTAIDKEAAERCTTVYLVERRTDMLPSL 537 Query: 337 LSNGLCSLNPQVDRLCMVCEMTV---SSKG-----RLTGYKFYEAVMSSHARLTYTKVWH 388 L+ LCSL DRLC G ++ +F++A+++S+A L+Y + Sbjct: 538 LTTDLCSLVGGKDRLCFSVLWEFQLNKKNGNEEVLKIVNTQFHKAIINSNAALSYAEAQA 597 Query: 389 ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERI 447 + D + L + + L ++ + R G + S+E +F ++E + Sbjct: 598 RIDDKNDNSD----LTQSIRRLLKAAMIIRRKRMAGGALELASQEVRFELDSETSDPTDV 653 Query: 448 EQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 + D ++L+EE M+LAN S A ++ ++ R H P + + S RS+L + G+ Sbjct: 654 AEYTMKDTNRLVEEFMLLANTSVAEQILKHFPSNSVLRRHPPPKEQQLKSLRSLLEKQGV 713 Query: 507 E--LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY----DPEN--RGHFGL 558 + G N+ R + D +++ M R+M QA Y + EN H+GL Sbjct: 714 KGFQFGSNRELSRSLNTVCNKKDDPYFNRLVRIMTTRTMNQAQYFCTGEVENGMFSHYGL 773 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A+ Y HFTSPIRRY D+ +HR + L +T +++ + Sbjct: 774 AMGLYTHFTSPIRRYADILVHRLLMASLGIRPLPPQLNDKTA--------VIEQCDKINF 825 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV---------TGFGFFVRLDDLFID 669 R A A R A+ + VI+ V G V + ID Sbjct: 826 RHRNAQFAGRASAELHTYLYFNKNGPCTADAVITRVRARIGGLRRGGGSLQVVVPRYGID 885 Query: 670 GLV--HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 G+ ++ D+D + D+ + + S T + D ++V++ A N D R Sbjct: 886 GVCKLDDNNKDDDEWICDEDKMIAVNDKSKITLAVFDHIQVKIMADNTDFR 936 >UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babesia bovis RepID=A7AWK8_BABBO Length = 951 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 161/680 (23%), Positives = 263/680 (38%), Gaps = 57/680 (8%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYG---FLRVEGRKDDLYLSSEQMKTCIHGDQVL--- 125 + + E V GT +R +G + + D+ + + D V Sbjct: 288 QNGYVSCGEDEYKVCGTYNLNRAIHGDAVCIEIVTDGMDVVVPDSGDDAAVPEDIVAEDS 347 Query: 126 --AQPLGADRKGRR------EARIVRVLVPKTSQIVGRY-----------FTEAGVGFVV 166 + L D+ + E R+V +L + G + V Sbjct: 348 EDIKLLDVDKTDKPLECLKKECRVVGILKRNWREYCGTLMAVDEAIDMVGHSHMVQRIFV 407 Query: 167 PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 P D+R+ + I I + +VVV + K G VE++GD + Sbjct: 408 PVDARIPY-ICIDTRKSSELENKRIVVV-IDSWDRFSRKPSGHWVEIIGDVEDLETESAV 465 Query: 227 ALRTHE-IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 LR HE I +P ++ + E R D R + ++D +D DDA+ Sbjct: 466 ILREHEVITREFPPKAYMELPPADWKPGAEDIKLRKDFRKNLVFSVDPPGCKDIDDALGF 525 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 G + V IADV+++V+ + +D+EA R T+VY + MLP +L+ LCSL Sbjct: 526 SVLDNGNIEVSVHIADVTHFVKAGSFIDKEASKRCTTVYLVDRRTDMLPSLLTTNLCSLV 585 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK 405 P DRLC + +FY+ ++ S TY ++ + + Sbjct: 586 PNEDRLCFSVVWQFDRNNEIVDTQFYKGIIRSSRAFTYKDAQDLIDAGGS-----DNITE 640 Query: 406 HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIL 465 L+ L N+ K+L R E G + ES E KF + + ++++ D ++++EE M+L Sbjct: 641 ALKGLDNIAKILRAKRFESGAVELESPEVKFEY-ELTDVRKMQKYVLYDTNRMVEEFMLL 699 Query: 466 ANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLE 524 AN+S A + E+ AL R H P E + + L++ G+E GN + + L Sbjct: 700 ANVSVATKIFERFPTSALLRRHPPPVDERLKVLQRSLSQHGIEFEFGNSRDLNLSLKRLV 759 Query: 525 SVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 D L+ M R M QA+Y + H+GL+ + Y HFTSPIRRY D+ + Sbjct: 760 QSGDPRLGSALRIMTTRCMSQAVYCHSGEAGVTSFKHYGLSSELYTHFTSPIRRYADVIV 819 Query: 579 HRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 HR + L E E + + R A R+ + F Sbjct: 820 HRMLAAALDIEAMDTSFYQELSSQ----------CEVLNKRHRNATWCGRESSRLFAYLF 869 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 + + + + V +L I+ V D FD QR G+ Sbjct: 870 LKQKGEVTATATVIGTSEKRICVIAHELGIEATARV-----DISEFDAQTQRATLAC-GK 923 Query: 699 TYRLGDRVEVRVEAVNMDER 718 L D V V++ A N R Sbjct: 924 HVNLFDHVTVKLSAENKHYR 943 >UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina RepID=Q5KDY7_CRYNE Length = 1671 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 156/634 (24%), Positives = 265/634 (41%), Gaps = 41/634 (6%) Query: 157 FTEAGVGFVVPDDSRLSFDILIPPDQIM-------GARMGFVVVVELTQRPTRRTKAVGK 209 T + + P D R+ I IP +Q A + V + + P G Sbjct: 1005 ETRPKIVWFKPTDKRVPL-IAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPFGT 1063 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPL 268 +VE LG + + L+ P + + + + + VPE R DLR+ + Sbjct: 1064 LVEELGAIGNSEVETSALLKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERV 1123 Query: 269 VTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQ 328 TID ++D DDA+ + + G + + V IADVS++V+ + LDREAR R TSVY + Sbjct: 1124 FTIDPPHSKDLDDALSFKDNKDGTFTVGVHIADVSFFVKANAQLDREARKRATSVYLVQR 1183 Query: 329 VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWH 388 +PM P +LS LCSL P +RL TV +G + KF + ++ S A+LTY Sbjct: 1184 AVPMFPPLLSEDLCSLVPDYERLTFSAIFTVDEEGNVLQKKFAKTIVKSCAKLTYDDALT 1243 Query: 389 ILQGDQDLREQYAPLV------KHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 +++G R + + + + LH++ + R E G + S + F F+A+ Sbjct: 1244 VVKGGALPRSKTSRIHLATDIEGDIRSLHSIASKMRARRIENGAMVVSSSKVSFEFDAQG 1303 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVL 501 R + Q +A ++EE M+L N S AR + A E AL R H+ PS + SF + Sbjct: 1304 RPVDCQTYQNGEASVIVEEFMLLTNQSVARIIANALPEQALLRRHEPPSERRLESFVARA 1363 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGH 555 +LG ++ + + + V D A + + + +++A Y D H Sbjct: 1364 TKLGFDMDPTSAGT---LQKSFDKVLDNDSALCIDLLRKKVIQRARYFCAGMLDIAKFAH 1420 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 +GL Y HFTSPIRRY D+ +HR + L + +++ + Q Sbjct: 1421 WGLNTPLYTHFTSPIRRYADVLVHRMLDACLT------SPNPNEVKFLMDRDQVAKAAQQ 1474 Query: 616 CSMAERRADEATRDVADWLKC----DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 C+M ++ A A C D V + +++V F V + + ++ Sbjct: 1475 CNMKKQSAKLAEEQSVHLFLCILINDLTEHYGPVVREARVTNVLETAFDVIIPEFGVEKR 1534 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 VHV + + +D+ L + + D + + D+R + +RA Sbjct: 1535 VHVDKMPVETAVYDEHRDILSLYWTTK-----DVIS-HLADTTEDKRLLKIKSHGEQRAL 1588 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEP 765 + A + D +Q K + P Sbjct: 1589 GSSTSQATDDTALFDGNSPDVVSKQYAKSAHPSP 1622 >UniRef50_B8D959 Exoribonuclease 2 n=15 Tax=Gammaproteobacteria RepID=RNB_BUCA5 Length = 649 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 163/651 (25%), Positives = 279/651 (42%), Gaps = 34/651 (5%) Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 L + V+G V G+GFL V+ +K ++ + MK +HGD+++A L K R Sbjct: 15 LHAKSPRVEGIVKSTERGFGFLEVDPQK-SYFIPPKNMKNVMHGDKIIA--LLTTEKDRE 71 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ--IMGARMGFVVVVE 195 +++ P ++ VG+ + F+VPD L I P++ I + G V + Sbjct: 72 IVEPEKLIEPFLNRFVGKIEKKDNRLFIVPDYPFLKDLITCQPNKNCINIFQNGDWAVAQ 131 Query: 196 LTQRPTRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 L + + ++ E + + + L H++ P A E ++ Sbjct: 132 LKKHKLKGDHLFYAELTEKITQEDDPLIPWWVTLARHDLDRKEPLAEED-------DLIL 184 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 + R DL DL +TID + +D DDA++ +K G L VAIAD + Y++ + LD Sbjct: 185 KESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDV 244 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKFYEA 373 A R + Y P IPMLP LS +CSLNP R + C +TV G + +F+ A Sbjct: 245 IASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFLA 304 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 + S ++L+Y V ++ + + LH L + K R++ + +S E Sbjct: 305 WIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVLFKDSIE 364 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 +F + +I + +R AHK+IEE MI+ANISAA F+ K ++ +H Sbjct: 365 YRFHVSEHGKIIDVLIEKRRIAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGFDLVN 424 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + S L L + + L V + + + + R + Sbjct: 425 AENAVSFLRSYNLNFTVKEITTLKGFCN-LRRVLNIISNNYIDSRIRRFQSFGDFSTIPG 483 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 HF L YA +TSPIR+Y D+ HR +K ++ KE+ S++ + Sbjct: 484 PHFALGFSEYATWTSPIRKYSDMINHRLLKSIIKKEK--------------SIKPGEDIK 529 Query: 614 QHCSMAERRADEATRDVADWLKCDFML--DQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 S RR A RDV+DWL F+ F I+ ++ G RL + + Sbjct: 530 IKISEQRRRNRMAERDVSDWLYTIFLQKKKYQNQKFNAEITDISRSGIRARLIENGANVF 589 Query: 672 VHVSSLD--NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + + + + F+Q ++ Y++ D ++V + + + R I Sbjct: 590 IPGTLIHPIREELNFNQESGKVFINGIMH-YKISDLIQVTLSDIRLKTRSI 639 >UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB86_9BACT Length = 645 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 158/659 (23%), Positives = 278/659 (42%), Gaps = 46/659 (6%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRK-----DDLYLSSEQMKTCIHGDQVLAQPLGADRK--- 134 D V+G + G+GF+ + + DD+++ + + + GD+V L Sbjct: 11 DTVEGKLTVTPTGFGFVALPADEAGRHPDDIFIPPQFVGEAMDGDEVKVAILPPREDVPG 70 Query: 135 --GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 +IV VL + VG G + P + R+ DI I GA+ G V Sbjct: 71 DSRGPAGKIVAVLKRAREEFVGELQ---EGGRIKPLNRRMPDDIEIT-GSRRGAKPGDWV 126 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 V+L + G I + +G +D + ++ + +A ++ + V Sbjct: 127 KVKLL--GSEGGSWQGAITDAMGKAGEIAADLDAVMAEFDLCPRYSEADNEEALKI---V 181 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG-GGWRLWVAIADVSYYVRPSTP 311 P E + R D VT+D DA+DFDDA+ + V I+DV+ ++ P + Sbjct: 182 PREIE--REDCTKQLTVTLDPIDAKDFDDALSIMPGEKRTEVIVGVHISDVAAFIAPKSK 239 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV-SSKGRLTGYKF 370 D+EA R S Y P + +PMLP L+ + SL +TV S G++ ++ Sbjct: 240 FDKEAEKRSFSCYLPGRTLPMLPAALTARI-SLQAGQVSNAHTVFLTVERSSGKILSFRR 298 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG-ISF 429 + RL Y +V + + L L++L + + + R++ I Sbjct: 299 AHTKIKVDHRLNYEEVQEFIDHGTAPADWSKNLQSKLKQLVEITRKMQAYRKKTEDFIDL 358 Query: 430 ESEEAKFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 E + + + + RI + ++ ++EECM+ AN + + + L+R+H + Sbjct: 359 ALPEVRILCDEKTNRIVGLVSKVPRESENVVEECMLAANSAVGTQLGEISVAGLYRVHPE 418 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P E I F + + E+ + G+ + L+S+ D P ++ + LLRS+ +A Y Sbjct: 419 PEAEKIEEFTANMQEM-FGITPGDLSSRKACNAFLKSLPDDPKRPIILSQLLRSLPRAYY 477 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 + HFGL Y HFTSPIRRYPDL +H+ + +TG S Sbjct: 478 LEKPALHFGLGKGRYCHFTSPIRRYPDLIVHQQLWNY------------DTGARTRSTAT 525 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN----VFKGVISSVTGFGFFVRLD 664 + ++ CS E D A D LK F+ +++ F GVI+ VT G + + Sbjct: 526 LAKVALDCSTKEENNDNAYFAANDRLKLRFLQEKLEAGGDLTFDGVIAKVTPAGLQLDVS 585 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 +L I G + L Y+ + +R E+ ++ G + VR+ +++ F Sbjct: 586 ELGIYGFIPNEQLKGSSYKNEHARRR---EAESAEWKPGKTMRVRLASIDFVRGSAVFV 641 >UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegleria gruberi RepID=D2UXR9_NAEGR Length = 1053 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 154/672 (22%), Positives = 259/672 (38%), Gaps = 91/672 (13%) Query: 113 EQMKTCIHGDQVLAQPLGADRKGRRE---------------------------------- 138 + M IHGD V + L R Sbjct: 316 KHMNRSIHGDIVAVEILPKSEWSRPSSITIMDDNDIDLENNHPLTGTSESDSSEKSLTSS 375 Query: 139 --------------ARIVRVLVPKTSQIVGRYFTEA------GVGFVVPDDSRLSFDILI 178 ++V ++ G + VP D + I I Sbjct: 376 FYSRFVNSERLIPTGKVVGIIKRNWRSYCGSLDEDTDSEEGLNKVLFVPVDRCIP-KIRI 434 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIW 237 Q M + V + G + +G+ T ++ L H++P Y + Sbjct: 435 VSRQCKEL-MNKRICVMIDGWSVNSKYPDGHYISTIGEIYNTDTESEVILLEHDVPHYKF 493 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 Q++ + + E+ R DLR L +V++D D DDA++ + G + V Sbjct: 494 SQSIIDCLPPKDWQPTEKDMERRRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIEIGV 553 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADV+ +V+ T +D EA RGT+VY + I MLP +L+N LCSL VDRL Sbjct: 554 HIADVTNFVKEGTAIDIEAAKRGTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFSVIW 613 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 S +G + + ++++ S +TY + ++ D +E+ L L L + K+L Sbjct: 614 KFSPEGDIKSVDYTKSLIRSRKSMTYEEAQKVI----DDKERDDELATDLRLLMQISKIL 669 Query: 418 DKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 K R E G ++ S KF AE +E Q + + ++EE M+LANI+ A+ + K Sbjct: 670 KKKRNEAGSLTLASPAVKFSMEAESSNPTDVELYQLRETNSMVEEFMLLANIAVAKKITK 729 Query: 477 -AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLES---VADRPDA 532 A R H + + +L G+ L + + + S + D+ Sbjct: 730 EFPMVACLRRHPPVNPKKFEPLLEMLKRHGINLDISSSKILNETLSNIRSSGLIKDKYMD 789 Query: 533 EMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 +++ M+ R M+QA+Y E H+GLA+ Y HFTSPIRRY D+ +HR + + Sbjct: 790 TLVRIMVTRCMEQAVYFISGDCSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLLGAAI 849 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 G+ T + YS M L + R + A R + + Sbjct: 850 ----GYYPLTEKVTDREYSRRLMNDL----NKRNRMSQYAQRSSVELYTNVYFNSNPITS 901 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR-----FDQVGQRLMGESSGQ--- 698 + I+ + G V + + HV L D + F++ L+ E + Sbjct: 902 ERAYITQMKSNGIVVFIPRFGFE---HVIFLTKDNVQYSNITFNEETDSLVFEDQNKPTI 958 Query: 699 TYRLGDRVEVRV 710 T + + V +R+ Sbjct: 959 TLTVFEHVNIRI 970 >UniRef50_A4WAX5 Exoribonuclease 2 n=51 Tax=Gammaproteobacteria RepID=RNB_ENT38 Length = 644 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 162/669 (24%), Positives = 280/669 (41%), Gaps = 41/669 (6%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M +D L+ +Q L + +G V G+GFL V+ +K ++ QMK +HG Sbjct: 1 MLQDNPLLAQLKQQ--LHSQTPRAEGVVKATEKGFGFLEVDAQK-SYFIPPPQMKKVMHG 57 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+V A +K R A ++ P ++ VG+ + +VPD L I D Sbjct: 58 DRVTAVI--HTQKDRETAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAIPCRAD 115 Query: 182 Q--IMGARMGFVVVVELTQRPTRRTKAV-GKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 + + G V ++ + P + + + + + + + L H + P Sbjct: 116 RNCEHDFKEGDWAVAQMRRHPLKGDRGFYADLTHFITYSDDHFVPWWVTLARHNLEKEAP 175 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 V ++ + R DL L VTID +D DDA+Y E+ G L VA Sbjct: 176 NGVATEML--------DEGLERRDLTALNFVTIDSASTQDMDDALYVEEGADGKLHLTVA 227 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IAD + ++ + LD A+ R + Y P IPMLP LS+ LCSL P R + C MT Sbjct: 228 IADPTAWIAEGSKLDDSAKVRAFTNYLPGFNIPMLPRELSDDLCSLRPNQIRPVLACRMT 287 Query: 359 VSSKGRLT-GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 +++ G + +F+ A + S A+L Y V + L+G + + + + + + L + Sbjct: 288 IAADGTIEDDIEFFAATIESKAKLAYDDVSNWLEGAGNWKPESEAIAQQITLLQRVCLSR 347 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 + R+ + + + +F+ + + I R A++++EE MI ANI AAR + Sbjct: 348 GEWRKTHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDK 407 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 ++ +H + ++L + + + +L + +P L + Sbjct: 408 LGFGIYNVHTGFDPANTEALAALLKTHDVHVDPQEVLTLEGFCKLRRELDAQPSG-FLDS 466 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 + R A E HFGL L++YA +TSPIR+Y D+ HR +K ++ E + Sbjct: 467 RIRRFQSYAEISTEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIVKGETIARPQ-- 524 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ--VGNVFKGVISSVT 655 + + R A RDV DWL F+ D+ F I ++ Sbjct: 525 ------------DEATVQMAERRRLNRMAERDVGDWLYARFLSDKAGTDTRFAAEIIDIS 572 Query: 656 GFGFFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 G VRL + + L D + ++ GE Y++ D ++V + Sbjct: 573 RGGMRVRLVENGAVAFIPAPFLHAVRDELVCSQENGSVQIKGE---TVYKVTDVIDVNIA 629 Query: 712 AVNMDERKI 720 V M+ R I Sbjct: 630 EVRMETRSI 638 >UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic control homolog-like 2 n=2 Tax=Ciona intestinalis RepID=UPI000180BAF4 Length = 925 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 146/684 (21%), Positives = 273/684 (39%), Gaps = 102/684 (14%) Query: 83 DLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGAD------- 132 +L+KGT+ + + F+ + D+ + + ++GD V + Sbjct: 161 ELIKGTLRVNAKKFSHAFI-ADKEGHDILMDGFKDRNRALNGDVVAVRIKDKKDWIIGVS 219 Query: 133 -------------------------------RKGRREARIVRVLVPKTSQIVGRYFTEAG 161 K R+ +V ++ K+ Q+V + Sbjct: 220 DLAEQLGAVSVGDSKADQTSPNVSSPTVGKFNKTRKTGVVVGIVEKKSRQVVTGHLRLDK 279 Query: 162 VGFVVPDDSRL--------SFDILIPPDQIMGARMGF-----VVVVELTQRPTRRTKAVG 208 P+D + + ++ IP +++M + + V ++ + +G Sbjct: 280 ---AKPNDKFITLETVSKNNQNLQIPREEVMKEKAKQDISNVLFVGKILKWEPHSPLPLG 336 Query: 209 KIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA-GLKEEVPEEAKAGRVDLRDL 266 ++ + +G+ L HE+ + + AV Q + L +P+ +A R D Sbjct: 337 ELCQSIGEIGQIEPETTRILIDHEVDFSEFSNAVNQCLPSDLPWTIPQAERAKRRDFTSE 396 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 + +ID ARD DDA++C++ G + + V IADVSY+V P T LD+ A R TSVY Sbjct: 397 CIFSIDPPSARDLDDALHCKQLPNGTYEIGVHIADVSYFVHPGTALDKVASERCTSVYLV 456 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 +VIPMLP +L LCSLNP +RL ++ +G++ F +V+ S A+ +Y Sbjct: 457 QRVIPMLPRLLCEELCSLNPGTERLAFSVVWNITEQGKILSQWFGRSVIRSCAKFSYDHA 516 Query: 387 WHILQG-DQDLREQYAPLVKH-----------------LEELHNLYKVLDKAREERGGIS 428 + D+D + + ++ + L + + L K R + G + Sbjct: 517 QSFIDNPDRDFSQPESACQENEFPEITGNFSMNEIKTKVLGLFKVSQNLRKQRIDNGALR 576 Query: 429 FESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-KEPALFRIH 486 + + N+E + +++LIEE M+LAN++ A + + A R H Sbjct: 577 LDQVRLSYTLNSETGLPNGCYTYEYKKSNELIEEFMLLANMAVAHKLYTSIPTHAFLRSH 636 Query: 487 DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-----AEMLQTMLLR 541 +P E + F S LGLE+ + AE L + + + L + ++ Sbjct: 637 SEPKEEMMQDFVSTCMALGLEVDASS---SEALAESLRTAPGADELAKYRKQALFLLAIK 693 Query: 542 SMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 + A Y D H+ L + Y HFTSPIRRY DL +HR + ++ ++ Q Sbjct: 694 PQQLATYICAGSVSDESKYHHYALNVPLYTHFTSPIRRYADLVVHRQLAAVIGEQSDEQ- 752 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 + S +E+ C+ + A +A D + + +G++ +V Sbjct: 753 ------MMNLSTDELQAQATLCNHRKSNAKQAQELSIDLFFNLLVNNFGPLESRGMVMNV 806 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLD 678 + + + V++ L Sbjct: 807 LDRAVDILSTEYGVTKRVYLEELP 830 >UniRef50_B9L5L4 Ribonuclease R n=2 Tax=Epsilonproteobacteria RepID=B9L5L4_NAUPA Length = 652 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 177/638 (27%), Positives = 306/638 (47%), Gaps = 49/638 (7%) Query: 87 GTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 G V + G+GFL G ++ D + +E + GD V+A+ L ++KGR +A++V +L Sbjct: 49 GKVDVTKKGFGFLTPLGVKEKDYLIEAEHLNGAGRGDLVIAEKLF-NKKGRPKAKVVYIL 107 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDI--LIPPDQIMGARMGFVVVVELTQRPTRR 203 S V E +P + D+ + + ++ V ++ Sbjct: 108 EKAFSVSVVYLTFEYKNNKKIPVLRNIKTDLQTYVAEKKKTLKKLPEGAVFKVDNY---- 163 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 KI++VLG + I+L + + + + + V +E RVDL Sbjct: 164 ---TNKIIDVLGVLDDPWVDEKISLALYNKKEEFSKKAIAEAEAYGDYVEKEFYPNRVDL 220 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 DL TID A+D DDA+Y +K++ L+VAIADVS YV + +D+EA+ RG S+ Sbjct: 221 TDLSFCTIDPPTAKDHDDAIYFDKEKN---ELYVAIADVSEYVYLNGNIDKEAKERGFSI 277 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 YFP + IPMLP LS +CSL Q DRL V ++ +++K + + +EA++ S + +Y Sbjct: 278 YFPHKSIPMLPRQLSENICSLKEQEDRLAFVFKIKLNNKNEVVKEELFEAIIKSKRKYSY 337 Query: 384 TKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 +V L G ++ E +++ L L K + R + G + F S+E K N + Sbjct: 338 DRVDEFLDGRFENTDETDNEILEWLMPLWEKVKKIRTKRLKTG-LDFSSDEIKMTLNEQG 396 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 IE+IE + +HKLIE+CM+LAN +AA+ + + +FR+H+KPS+ +I L Sbjct: 397 LIEKIELEKETPSHKLIEDCMLLANKAAAKMI----DFGIFRVHEKPSSNSIDELYESLT 452 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 LG+ + K + ++ + + + +++RS +QA YD +N GH+ L + Sbjct: 453 ALGINIDVEEKDFVKVVRDIQKQAKMMGIEKEVDKLIIRSQQQARYDAKNIGHYALGFEK 512 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRY DLTLHR +K ++ ++ + + + L S ER Sbjct: 513 YTHFTSPIRRYSDLTLHRLLKSIIRNDKKQ---------MEFILRNIEALVVKISELERE 563 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A + D D + + + ++KG+I + ++ + D Sbjct: 564 AMKVEWDFYDRKYARYAKEHLNEIYKGIIED---------------TEIPPIAKITEDLL 608 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 +G R+ + + Y L ++V++ + + N+ KI Sbjct: 609 ----LGARVFLKDKKK-YNLFEKVDIEIVSSNIATAKI 641 >UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomycota RepID=DIS3_SCHPO Length = 970 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 159/692 (22%), Positives = 265/692 (38%), Gaps = 93/692 (13%) Query: 97 GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGAD----------------------- 132 G + V G + +S E + + GD V Q L D Sbjct: 281 GSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILPQDQWKTEAEEIADDDEDVVVSTAAE 340 Query: 133 --------------RKGRREARIVRVLVPKTSQIVG-----RYFTEAGVG----FVVPDD 169 R A++V +L VG G + P D Sbjct: 341 PDSARINDLELITKRNAHPTAKVVGILKRNWRPYVGHVDNATIAQSKGGSQQTVLLTPMD 400 Query: 170 SRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALR 229 R+ I Q +G +VV + G V LG+ + L Sbjct: 401 RRVP-KIRFRTRQAPRL-VGRRIVVAIDLWDASSRYPEGHFVRDLGEMETKEAETEALLL 458 Query: 230 THEIPYI-WPQAVEQQVAGL--KEEVPEE----AKAGRVDLRDLPLVTIDGEDARDFDDA 282 +++ + +P+AV + +VP + R D RD + +ID +D DDA Sbjct: 459 EYDVQHRPFPKAVLDCLPEEGHNWKVPADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDA 518 Query: 283 VYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLC 342 ++ G + + V IADV+++V+P+T +D EA +RGT+VY + I MLP +L LC Sbjct: 519 LHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLC 578 Query: 343 SLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP 402 SL P V+R C + + F ++V++S +Y + + P Sbjct: 579 SLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQARIDDQK----MQDP 634 Query: 403 LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEE 461 L + + L L K+L + R + G ++ S E + + E +E Q + + L+EE Sbjct: 635 LTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEE 694 Query: 462 CMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL-GLELPGGNKPEPRDY 519 M+LANIS A + + + A+ R H P S + +L G+ L + Sbjct: 695 FMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDSLQDILRVCKGMHLKCD---TSKSL 751 Query: 520 AELLESVADRPDA---EMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPI 570 A+ L+ D + +L+ + R M A Y P + H+GLA Y HFTSPI Sbjct: 752 AKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPI 811 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRY D+ HR + + E + + ++++ + R A A R Sbjct: 812 RRYADVLAHRQLAAAIDYETINPSLS--------DKSRLIEICNGINYRHRMAQMAGRAS 863 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD---NDYYRFDQV 687 ++ + V + V GF V + ++G+V+ SL + + Sbjct: 864 IEYYVGQALKGGVAEE-DAYVIKVFKNGFVVFIARFGLEGIVYTKSLSSVLEPNVEYVED 922 Query: 688 GQRLMGESSGQ------TYRLGDRVEVRVEAV 713 +L E Q ++ +V VRV V Sbjct: 923 EYKLNIEIRDQPKPQTVQIQMFQQVRVRVTTV 954 >UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, putative n=4 Tax=Trypanosoma RepID=D0A7T6_TRYBG Length = 972 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 159/699 (22%), Positives = 262/699 (37%), Gaps = 92/699 (13%) Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLG- 130 R + E G + G G+ F + + L + IHGD V + L Sbjct: 256 RGKLRVSETNCFF-GEIRGQWKGHNF-------ERVLLPGRTNLNRAIHGDIVTVELLPV 307 Query: 131 ------------------------ADRKGR-----------------REARIVRVLVPKT 149 + GR R+V + Sbjct: 308 ASWRPLRGAKPTEEMNDTGAGGDDHENSGREGIGEESEGAALARGYTPVGRVVGITTMNR 367 Query: 150 SQIVGRYFTEAGVGFV--------------VPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 G E P D+R+ I I + + + V+ Sbjct: 368 RPFCGSIDVEELNKLADTLDTLTGTVSVLFQPKDNRIPR-IRITTAHLGDLKDKRLSVI- 425 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVAGLKEEVPE 254 + + VG VEVLG + L ++IP Y + +AV + + V E Sbjct: 426 IDDWGEHSSFPVGHYVEVLGTIGDKDTEAKVILLENDIPHYDFSEAVYDCLPKGEWNVTE 485 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E R+DLRDL +V++D RD DDA++C + G + V IADV+++++ T +D Sbjct: 486 EELGNRLDLRDLCVVSVDPLGCRDIDDALHCRRVNGNHLEVGVHIADVTHFLKEGTAMDE 545 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA R TSVY + I MLP++L+ LCS+ DR + F + V Sbjct: 546 EAAKRSTSVYLVDRRINMLPQLLTENLCSIVADEDRYAFSIMWEFDENYSVVREFFGKTV 605 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S A L Y ++ +D E L L L + K RE+ G + S+E Sbjct: 606 IRSRAALYYGDAQRMIDDPEDESEA----AVSLRYLMQLSRHFRKRREKDGALFLCSQEF 661 Query: 435 KFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTE 492 KF + + ++ Q D++ +IEE M+ AN +AA R L R H P+ Sbjct: 662 KFKVDNDHVNPTDMQAYQTFDSNSMIEEWMLFANAAAARRVYASFPRWTLLRRHQAPAEN 721 Query: 493 AITSFRSVL-AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 A + + ++G++L + E +D +++T++ R ++QA Y Sbjct: 722 AFDTLNEAIRRKIGVKLDDTTSLALNESLEKCVDPSDPYFNRLIRTLVTRCLRQAQYFSS 781 Query: 549 ---DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 + HFGLA+ Y HFTSPIRRY D+ +HR + L + H Sbjct: 782 SEVSKDEFHHFGLAMPIYTHFTSPIRRYADVIVHRQLAAALG--------IMDVSEAHMV 833 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF---KGVISSVTGFGFFVR 662 +M L + + +A +A RD + ++ + G + ++ FV Sbjct: 834 SVKMEALASNLNYRHEQAQKAGRDSQNLFTGFYLRNFANQEIPSEDGYVVKLSETHVFVL 893 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYR 701 + +G + +L D+V + G R Sbjct: 894 VPKYGQEGKIAKETLVRVPNLLDKVKVGIEVRQRGDVLR 932 >UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAY1_PHATR Length = 908 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 238/563 (42%), Gaps = 37/563 (6%) Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPD----------DSRLSFDILIPPDQIMG 185 R ++V ++ S G + PD D ++ ILI Q Sbjct: 359 RPTGKVVGIIRRNFSTYSGSIYAIKNYEREHPDGSITCVFFPVDKKIP-PILIRTTQRDR 417 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQ 244 G +VV + P+ +G V V+G + ++ L+ H+IP+ +P AV Sbjct: 418 L-FGQRIVVAMDSWPSTSIYPLGHYVRVIGPAGSKDVETEVLLQEHDIPHEPFPAAVLAC 476 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 + + + GR D+R +P+++ID + +D DDA++C G +++ V IADV++ Sbjct: 477 LPPEDYRIDVDNSPGRQDIRHIPVLSIDPPNCKDIDDALHCTVLPNGNFQVGVHIADVTH 536 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV+ T +D EA NR TS Y ++ + MLP +L+ LCSL VDR V+ + Sbjct: 537 YVQAGTAIDLEAANRSTSTYLVNKRLDMLPSLLTTDLCSLKGNVDRYAFSVLWEVTPEAE 596 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + +F + ++ S A LTY + ++ D + + VK L +L + K R + Sbjct: 597 ILNVEFQKTIIHSIAALTYQQAQTMIDQPDDPNDIQSNAVK---RLASLARKFRKRRIDA 653 Query: 425 GGISFESEEAKFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPAL 482 G ++ S E KF+ ++E ++ +A+ ++EE M+LAN++ + + + ++ Sbjct: 654 GALTLASPEVKFVLDSESLNPTDVQAYALLEANAVVEEFMLLANVTVSKKILRHFPTLSV 713 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 R H P+ S S L++ + D + +D ++L+ + R Sbjct: 714 LRRHPAPNRAMFDSLISKAKSKDLDINIDDSKRLADSLDAAVVESDPYVNKLLRILSTRC 773 Query: 543 MKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M A Y P H+GLA Y HFTSPIRRY D+ +HR + + Sbjct: 774 MSPAQYFCSGEFRPMEWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAVG--------V 825 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + S + L + + R A A R F + I V Sbjct: 826 APLPPHLSSKSYLHDLCANMNRRHRAAQLAGRASVQLHTLIFFAGDGAKEEQAYILDVET 885 Query: 657 F-----GFFVRLDDLFIDGLVHV 674 F V + I+G V + Sbjct: 886 AEGVEPSFTVIVPRYGIEGRVKL 908 >UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AH31_9CRYT Length = 1097 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 155/667 (23%), Positives = 271/667 (40%), Gaps = 97/667 (14%) Query: 139 ARIVRVLVPKTSQIVGRYF---------------TEAGVGFVVPDDSRLSF-DILIPPDQ 182 ++V +L + G + +P D ++ I Sbjct: 451 GKVVGILKRNWKEYCGTLLPLNTDDNRYSICYNSSARQHRIFIPIDPKIPRIRIHTRMSS 510 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAV 241 ++ + +VVV + + G V LG + L IP +P V Sbjct: 511 LLDYQ--RLVVV-IDEWDRSSFYPSGHWVSTLGRAGDLEAETSVILHCRNIPSAEFPNKV 567 Query: 242 EQQVAGL----KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----------- 286 + + + E E +GR D R+ + ++D +D DDA+ E Sbjct: 568 LRCLPNYGTNKEWEPRESDFSGRSDWRNKLVFSVDPPGCKDIDDALSIELIEGDDANGKL 627 Query: 287 -KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 +R+ V IADV+++V+P+T +D EA R T+ Y ++ I MLP L+ +CSL Sbjct: 628 APNDDVWYRVAVHIADVTHFVKPNTTIDEEASRRCTTCYLVNRRIDMLPGELTTDICSLV 687 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK 405 DRL C ++ ++ F + +++S TY + I+ + + Sbjct: 688 SHKDRLAFTCIWEINGLCKIRRSNFEKTIINSKHSYTYGEAQSIIDNLSNNSNE----AV 743 Query: 406 HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER----------------------- 442 L L NL K+L K R +RG + S E K R Sbjct: 744 ALRRLLNLSKILRKRRIDRGALELASSEVKIDLEEARTVKQSDIIDTSTEIDNTSARNCN 803 Query: 443 ------RIERIEQTQRNDAHKLIEECMILANISAARF-VEKAKEPALFRIHDKPSTEAIT 495 I+ + Q D + ++EE M+LANI+ A F ++ AL R H +P + + Sbjct: 804 ETSKIPNIKSVNMYQYLDTNSMVEEFMLLANITVAEFTLKHFPSCALLRKHPEPKYDQLD 863 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-------AEMLQTMLLRSMKQAIY 548 V+A+ G+ + A+ L ++ D P+ ++++ + R+M QA+Y Sbjct: 864 KLAQVIAKAGIH--NFKYKTSAELAKSLNNIKDDPNFQKDPIVNKLIRILTTRTMNQAVY 921 Query: 549 -----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 E H+GLA Y HFTSPIRRY D+ +HR ++ L + ++ + Sbjct: 922 FTTCKSSEGTYHYGLAENIYTHFTSPIRRYADIIVHRLLEASLGFSKLNEDIS------- 974 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + ++ML+L Q + + R A A RD + + + + +I V V + Sbjct: 975 -NKDKMLKLTQRLNKSMRNAQLAGRDSSKLFIYLYCKQHGKQIVEAMIMQVRNNFILVFV 1033 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLM-GESSGQTYRLGDRVEVRVEAVNMD-ERKID 721 D +G V +LD D +++D +L+ E +T +L DRV V V + + K+ Sbjct: 1034 PDFGFEGSV---NLDTDKFKYDFSVPQLVNNEDPTETLKLFDRVIVTVYISDEYFQNKVI 1090 Query: 722 FSLISSE 728 L+S + Sbjct: 1091 LDLVSKK 1097 >UniRef50_A4BI97 Exoribonuclease R n=1 Tax=Reinekea blandensis MED297 RepID=A4BI97_9GAMM Length = 647 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 164/660 (24%), Positives = 292/660 (44%), Gaps = 29/660 (4%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M D L + + L +GTV G +GF+ + +L ++M G Sbjct: 11 MLDDKSLAVLQSLKSDIKAAKTLYEGTVKGTGKKFGFVVNAADGSEHFLPPDEMSRVFPG 70 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+V + D G+ +A + ++ + G +F V P DS + +PP Sbjct: 71 DEVRFTIVDQD-DGKTKAELEELIRSPLDEFNGVFFVRGKAQGVEPFDSAFGGWLFVPPK 129 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 Q A +V ++ + P KA ++++ LG +AL IP + A Sbjct: 130 QTSHANNKDLVRAKVVRHPWDTGKAQAEVLKSLGSADNNRSWYSVALAEQGIPEAFSDAE 189 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 +Q L E PE R DL DLP VTID +D DDA++ G W+L VAIAD Sbjct: 190 LKQAKALAEAGPETD-PSRQDLTDLPFVTIDAASTKDMDDALFARPTENG-WQLSVAIAD 247 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 S Y+ + LD+ A+ R T+ Y P +PMLPE+L++ SL P R M+ +M + Sbjct: 248 ASAYIPLDSELDKAAQKRLTTTYLPGLTLPMLPEILADSAMSLVPDETRPAMIFQMQIDR 307 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G ++ ++ + A + S A+L Y V H + + + E + ++L+ L++ + L R Sbjct: 308 DGNVSDFEIFPATVRSQAKLAYDDVAHWFENNA-IPESHQ---ENLQALNDATQALASWR 363 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 + + + + + ++ I Q +N A L+EE MI+ N +A++++ +P Sbjct: 364 RKNANPMKDRVDYRIRVDDHFQVTDIVQEHKNPARALVEEAMIVTNYQSAQWLQD--QPG 421 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 LF H + T + +L + ++ N + D+ +++ + L +L + Sbjct: 422 LFMCHLGFKPDRETELKGLLRDYTPDVAELNGHDLADFRKIMAASQTIDFP--LYAVLQK 479 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 + + E + HFGL L Y + TSPIR+Y DL +HR IK LA Sbjct: 480 RFDRGFWSREAQPHFGLGLSRYTNVTSPIRKYSDLCMHRLIKAKLA-------------- 525 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ ++ + + A + + + L+ ++ Q ++G I + V Sbjct: 526 -SRALPDIDHALSLLNERGNVSRFAAQKIENRLRYQWLSQQPEQTYRGTIVHLNANNLMV 584 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 RLDD G V + D + +D + L E Y+L V V++ +V+ ++ K++ Sbjct: 585 RLDDCGAVGQVDLRKRK-DEFSYDPLRMMLKFEEF--QYQLEQEVTVKIASVSAEQLKLE 641 >UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosaccharomyces pombe RepID=DIS3L_SCHPO Length = 927 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 157/659 (23%), Positives = 270/659 (40%), Gaps = 70/659 (10%) Query: 111 SSEQMKTCI-HGDQVLAQPLGADRKG-RREARIVRVLVPK-TSQIVGRYF---------- 157 +++ + H +++ + + + + R AR+V + S+IVG Sbjct: 265 HDDELGGAMEHLERLEIKSVASFKGDSRTRARVVAIEKRAEISKIVGILRAPGWSLKNVE 324 Query: 158 ---TEAGVGFVVPDDSRLSFDILIPPDQIMGA-----------RMGFVVVVELTQRPTRR 203 ++ +P D RL F I I + + + VE+T+ Sbjct: 325 YVSKKSSYAIFIPKDKRLPF-ITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWSIYS 383 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVD 262 +G + E LG+ + L + I + V + + E R D Sbjct: 384 RYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDWIISHEEIKKRRD 443 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 LR+ ++TID E ARD DDAV C G + + V IADV+++V+P + LD+EA +R T+ Sbjct: 444 LRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSALDKEAASRATT 503 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG-RLTGYKFYEAVMSSHARL 381 VY + IPMLP +L LCSLNP V+RL + S G + F + V+ + ARL Sbjct: 504 VYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVIKTCARL 563 Query: 382 TYTKVWHILQGDQDLREQYAP---------LVKHLEELHNLYKVLDKAREERGGISFESE 432 Y++ +++G P + + L + + L K R +G + S Sbjct: 564 AYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRFAKGAVEINST 623 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPST 491 E KF + + E ++ DA+ LIEE M+LAN S A + K +L R H P Sbjct: 624 ELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSLLRRHASPKE 683 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 + I F L + + + L S + E+ + M +RS+ +A Y Sbjct: 684 KQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENMAVRSLNRAEYFCT 743 Query: 549 ----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 + + H+ L+ Y HFTSPIRRYPD+ +HR ++ L + Sbjct: 744 GDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSL-----------KNTSPGI 792 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV------FKGVISSVTGFG 658 + + HC+ + ++ D ++ + + + ++G Sbjct: 793 DKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQAFATRISGNS 852 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRF----DQVGQRLMG-ESSGQTYRLGDRVEVRVEA 712 V + + I V +SS D+ F D ++ + S +T L DR +V + + Sbjct: 853 IDVYISEYGISNRVDLSS-DDRIKSFIVAPDDSSVKITLFDDSQKTIALTDRFQVYLYS 910 >UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomyceta RepID=Q0CT74_ASPTN Length = 1034 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 146/659 (22%), Positives = 253/659 (38%), Gaps = 73/659 (11%) Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYF-----------TEAGVGFVVPDDSRLS 173 A ++ K + A++V V+ Q VG FV+P D R+ Sbjct: 369 KAHGKNSEGKPQPTAKVVGVVKRNWRQYVGHVDSGSTGAQGTSGRRQQTVFVLPMDKRVP 428 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 I + Q +G ++V + G + LG+ G + L +++ Sbjct: 429 -KIRVRTRQAADL-LGQRILVTIDAWDRDSRYPTGHFIRSLGELETKGAETEALLLEYDV 486 Query: 234 PYI-WPQAVEQQVA------GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE 286 Y +P+AV + + GR DLRDL + +ID +D DDA++ Sbjct: 487 QYKPFPKAVLDCLPPEGHDWRVPASKDNVGWKGRRDLRDLLICSIDPPGCQDIDDALHAR 546 Query: 287 KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP 346 G + + V IADVS++V+P+ +D EA RGT+VY + I MLP +L LCSL P Sbjct: 547 PLPNGNFEVGVHIADVSHFVKPNNAMDLEASLRGTTVYLVDKRIDMLPHLLGTDLCSLKP 606 Query: 347 QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH 406 V+R ++ + F ++V+ S +Y + + E L + Sbjct: 607 YVERYAFSVLWEMTPNAEVVSADFTKSVIRSREAFSYEQAQKRIDDPSQKDE----LTES 662 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAE---RRIERIEQTQRNDAHKLIEECM 463 + L K+L + R + G ++ S E + + + + ++ + + L+EE M Sbjct: 663 MRTLLRFSKILRQKRMDAGALNLASPEVRIEADNDEVGDPLTDVKTKAMLETNSLVEEFM 722 Query: 464 ILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVL-AELGLELPGGNKPEPRDYAE 521 + ANI+ A + + AL R H P + + L + + L + D + Sbjct: 723 LHANITVASKIYSTFSQTALLRRHATPPPQNFEELTNQLSKKRNMRLDVSSSGALADSLD 782 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPD 575 A+ +++ + R M A Y H+GLA Y HFTSPIRRY D Sbjct: 783 RCVDEANPFFNTLVRILATRCMTSAEYFCAGAHGESEFRHYGLASPIYTHFTSPIRRYAD 842 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 L +HR + + E E + + + ++ + R A A R ++ Sbjct: 843 LLVHRQLASAIGYEGEDGRAPVEGV---MTRNRLEDICRNINYRHRNAQFAGRASIEYYV 899 Query: 636 CDFMLDQVGNV----------FKGVISSVTGFGFFVRLDDLFIDGLVHV----------- 674 + + V +G + V G V + I+G+V + Sbjct: 900 GQALKARGEKVSADGVDGGIEEEGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLPGDSAL 959 Query: 675 --------------SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 S DN+ Y + +S G T L +V+V V +V + + Sbjct: 960 KSVEERRELVIRRESDFDNEEYTLHVSDKGQTDKSRGLTVELFQKVKVNVSSVKEESGR 1018 >UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D29A Length = 829 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 146/605 (24%), Positives = 250/605 (41%), Gaps = 49/605 (8%) Query: 130 GADRKGRREARIVRVLVPKTSQIV---GRYFTEAGVGFVVPDDSRLSFDILIPPDQ---- 182 ++R ++ ++V ++ K S+ V ++ P D R+ + +P Sbjct: 194 SSERTTQKNGKVVFIVEKKHSRAVSGFLKFLPNKRFAMFSPVDHRVPR-VNVPLADCPAD 252 Query: 183 ---IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWP 238 G + + +TQ P A G++ + LG + L + + + + Sbjct: 253 FTSRPGDYENTLFICRITQWPADSNFAEGRLAKTLGQAGEIEPETEGILTEYGVDFSEFT 312 Query: 239 QAVEQQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + V + L +P + R DLR + TID ARD DDA+ C++ G + + V Sbjct: 313 EEVLNCLPQDLPWSIPAHELSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGV 372 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADVSY+V+ LD A R TSVY +VIPMLP +L LCSLNP DRL Sbjct: 373 HIADVSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIW 432 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ-----------DLREQYAPLVKH 406 +S +G++ F V+ S +L+Y ++ + + Sbjct: 433 KLSPEGKILSEWFGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEA 492 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMIL 465 + LHN+ K L R E G + + + F + E + Q D++KL+EE M+L Sbjct: 493 VLNLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLL 552 Query: 466 ANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEP-RDYAELL 523 AN++ + + E AL R H P T+ + + ++GL++ + R E L Sbjct: 553 ANMAVGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENL 612 Query: 524 -ESVADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPD 575 + E++ M R M+ A+Y D + H+ L + Y HFTSPIRRY D Sbjct: 613 GDDEYTAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYAD 672 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 + +HR + L S EE+ Q HC+ + + ++ Sbjct: 673 VIVHRLLGASLNCGP----------RLSVSGEEVHQQASHCNDRKTASKRVQELSSELFF 722 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 F+ + + ++ V F V + + ++ +SL+ +V R +G+ Sbjct: 723 AVFVKECGPLDSEAMVMGVLDQSFDVLVLRYGVQKRIYCNSLEG----LKEVEFRKVGKK 778 Query: 696 SGQTY 700 T Sbjct: 779 PEMTL 783 >UniRef50_A6DBI2 RNB-like protein n=4 Tax=Epsilonproteobacteria RepID=A6DBI2_9PROT Length = 650 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 176/680 (25%), Positives = 305/680 (44%), Gaps = 53/680 (7%) Query: 45 HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR 104 + ++ R + + G L L + G V + G+GFL G Sbjct: 11 GLARKDIPRDKRDIINDLIALGILE----NGQILKIKPKYRAGKVDITKKGFGFLIPIGV 66 Query: 105 KD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVG 163 K+ D + S + GD V+A+ + +KGR +A++V +L V E G Sbjct: 67 KERDYIIESHHLNGASKGDLVIAEIIKR-KKGRPKAKVVYILEKSFVYSVVYLKYEFKNG 125 Query: 164 FVVP--DDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTG 221 VP + + + + + ++ V ++ KI EVLG Sbjct: 126 RKVPVLRNVKTDQPVYVNEKKKTLKKLPDGAVFKVNNY-------TVKIEEVLGVLQDPW 178 Query: 222 MAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 + I+L + + + ++ + V + RVDL +L TID A+D DD Sbjct: 179 VDEKISLGLYNKKEEFSKKAIKEAKAFGDYVDKLMYPDRVDLTNLSFCTIDPPTAKDHDD 238 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 A+Y +K++ L+VAIADVS YV + +D+EA+ RG S+YFP + IPMLP LS + Sbjct: 239 AIYFDKEKN---ELYVAIADVSEYVYLNGNIDKEAKERGFSIYFPHKAIPMLPRELSENI 295 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQY 400 CSL DRL V +++ + + +EA++ SH + +Y +V L+G +++ E Sbjct: 296 CSLKENEDRLAFVFKISFDDNNEVIKEELFEAIIHSHRKYSYDRVDEFLEGKFENIDEID 355 Query: 401 APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 ++ L L K + R + G + FES+E + + I+ ++ + +HKLIE Sbjct: 356 KEILSWLMPLWEKVKHIRTERLKTG-LEFESDEIRMSLDENGMIKEVKIEKETPSHKLIE 414 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 +CM+LAN +AA+ + + +FR+H+KPS ++ S L LG+++ K + Sbjct: 415 DCMLLANKAAAKMI----DFGIFRVHEKPSQTSLDELYSELGALGIDVDVDEKDFVKVVE 470 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 ++ + + + +++RS +QA YD HF L Y HFTSPIRRY DLTLHR Sbjct: 471 KIQAQAKELGIKKFVDKLIIRSQQQARYDAACTPHFALGFDRYTHFTSPIRRYSDLTLHR 530 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 +K + +Q Y + + L S ER A + D D Sbjct: 531 LLKATIKNQQ---------KIVDYILRNVEALVVKLSELEREAMKVEWDFYDRKYARVAE 581 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 +G ++G+I ++ + L +G R+ +++ + + Sbjct: 582 LNIGKKYEGII----------EDKEIPPIAKILEDKL---------LGARVFLKNTEK-F 621 Query: 701 RLGDRVEVRVEAVNMDERKI 720 L ++V+V + + N+ KI Sbjct: 622 NLFEKVDVEIVSSNIATAKI 641 >UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F3 Length = 797 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 150/672 (22%), Positives = 268/672 (39%), Gaps = 74/672 (11%) Query: 84 LVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGAD-----RKG 135 L+KG + + + F+ + + D+ L + GD V + + + Sbjct: 47 LIKGVLRINPKKFTDAFISADYNERDILLEGVSSRNRALPGDVVAVELIPQSLTKVIHEN 106 Query: 136 RRE----------------ARIVRVLVPKTSQIVGRYF-----TEAGVGFVVPDDSRLSF 174 E ++V ++ K ++ + + G ++ P DSRL Sbjct: 107 NAEKNTSEILVNETNNVKRGKVVFIIEKKHPRVATGFIMNYRSNKFGFAYMSPVDSRLPR 166 Query: 175 DILIPPDQIMGA---RMGF----VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA 227 ILIP Q R + V + + A G+++ LG+ + Sbjct: 167 -ILIPLQQCPPLFLTRPQDFCKTLFVARIIEWEIDMGFAYGELMRSLGEAGNIEAETESI 225 Query: 228 LRTHEIPYI-WPQAVEQQVAG-LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 + + I + + + + + E R DLR+ + TID ARD DDAV C Sbjct: 226 IAANAIDSSPFGEDIIACLPNGDSWSIKPEEFKKRKDLREECIFTIDPATARDLDDAVSC 285 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 +K + + V IADVS+++ + LD A++R TSVY +VIPMLP VL LCSLN Sbjct: 286 KKIGDDLFEVGVHIADVSFFIEEESKLDIAAKSRATSVYLCQKVIPMLPAVLCERLCSLN 345 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ--GDQDLREQYAPL 403 P VDRL + S G + F +V+ S +L+YT +++ D DL+++ P+ Sbjct: 346 PGVDRLAYSVIWNMRSDGTVLTEWFGRSVIRSCVKLSYTHAQQLIETGTDSDLKKEEFPI 405 Query: 404 VKH---------LEELHNLYKVLDKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRN 453 V+ + L + + L K R + G + + + F ++E + Sbjct: 406 VEGFSLEKVRDVIHCLFKISQNLRKRRFDSGALRIDQPKLSFNLDSETGLPNGCSVYEYK 465 Query: 454 DAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN 512 D+++LIEE M+LAN++ R + A+ R H P + + + + + + Sbjct: 466 DSNRLIEEFMLLANMAVGRKIYAAHPDQAILRNHPAPHPIMLQEVQRICSAYSIFFDISD 525 Query: 513 KPEPRDYAELLESVADRPD---AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQS 562 L + + + + + A Y D H+ L + Sbjct: 526 SSSISKSLTNLSQLESDSRMFIEAAVTMLCAKPFQNATYFCTGTVDDESLYRHYALNVPI 585 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPD+ +HR + L +G +++ + HC+ + Sbjct: 586 YTHFTSPIRRYPDILVHRLLTAALDSTFKVKGRP----------KQLQAIADHCNERKWT 635 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS--LDND 680 A +A+ +D ++ + KGV+ +V V L + V+ L Sbjct: 636 AKKASEQSSDVFFAIYVKECGPFEEKGVVVAVLDKSIDVLCIRLGVVKRVYCDKLLLSGH 695 Query: 681 YYRFDQVGQRLM 692 Y ++ + +L Sbjct: 696 KYEYNILKPKLT 707 >UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5N0_SCHJY Length = 969 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 160/776 (20%), Positives = 292/776 (37%), Gaps = 102/776 (13%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 ++Y +P + +L+ ++ + + E + Q + R L ++G++ Sbjct: 208 STKEYITKLPDADILLDMISANAEAQAERE-SRTAGKTLFTQHWSMSRML-TCIKNGEI- 264 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL 129 + + ++GTV GY K + L + + GD V + L Sbjct: 265 ---HKGIVNINPYNFLEGTVSVL--GY-------DKPVIILGRSNLNRSVQGDLVAIEIL 312 Query: 130 GADRKGR----------------------------------------REARIVRVLVPKT 149 AR+V +L Sbjct: 313 PQSEWKTETSEIASDENDEEQVEEPVAQDESAFQAENEKEVARKHILPTARVVGILKRNW 372 Query: 150 SQIVG---------RYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 VG R + + P D R+ + + +G +VV + Sbjct: 373 RPYVGHVDMASVANRTGSSQQSVLLTPMDRRVPKIRF--RTRQISRLLGQRIVVSVDNWD 430 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAG------LKEEVP 253 G V LG+ + L +++ Y +P++V + + ++ Sbjct: 431 IDSRYPEGHFVRALGEMETKEAETEALLLEYDVQYRPFPKSVLDCLPAEGHEWRVPQDKS 490 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + R D R+L + +ID +D DDA++ G + + V IADV+++V+PST +D Sbjct: 491 DPLWHKRADFRELLVCSIDPPGCQDIDDALHARPLPNGNYEVGVHIADVTHFVKPSTAMD 550 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +RGT+VY + I MLP +L LCSL P+++R C + + F ++ Sbjct: 551 AEASSRGTTVYLVDKRIDMLPMLLGTDLCSLRPRIERFAFSCIWEMDENANVVNVSFTKS 610 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+SS +Y + + + PL + + L L K L + R + G ++ S E Sbjct: 611 VISSKEAFSYAEAQARIDDKK----AQDPLTEGMRILLRLSKKLKQRRLDNGALNLASPE 666 Query: 434 AKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPST 491 K + E IE Q + + L+EE M+LANIS A+ + + + A+ R H P Sbjct: 667 VKVQMDNETSDPMDIEIKQLLETNSLVEEFMLLANISVAQKIYETFPQTAVLRRHAAPPA 726 Query: 492 EAITSFRSVLAEL-GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY-- 548 + + +L ++L + + AD +L+ + R M A Y Sbjct: 727 SNFEALQDILHVCKDMQLKCDSSKALAHSLDECSDNADPYFNTLLRILTTRCMLSAEYFC 786 Query: 549 ----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 + H+GLA Y HFTSPIRRY D+ HR + + E H Sbjct: 787 SGTFAYPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAASIDYETLHPSLQ-------- 838 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 + ++++ + + R A A R ++ + + + + V GF V + Sbjct: 839 NKQKLVDICNGINYRHRMAQMAGRASVEYYVGQALKGRETRE-EAHVIKVFKNGFVVFIA 897 Query: 665 DLFIDGLVHVSSL--DNDYYRFDQVGQRLM-----GESSGQTYRLGDRVEVRVEAV 713 ++G+V+ +L FD+ L + ++ +V V V A+ Sbjct: 898 KFGLEGIVYTRTLSTPEPVVEFDEAQYALNVSIKAPKQHKIRIQMFQKVLVSVGAI 953 >UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomatidae RepID=Q4Q8N7_LEIMA Length = 920 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 181/847 (21%), Positives = 310/847 (36%), Gaps = 103/847 (12%) Query: 7 QEREAEKYANP--IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGL------RRR 58 EA++ +N + R++I + + + ++ L Sbjct: 114 ASEEAQRVSNLRCVSLRDYIKLTIASDSDLLEKIQYEEPEGMKESPLTRQLFTPHLGMAA 173 Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSE-QMKT 117 + A DG L + + ++G GH F + + M Sbjct: 174 MDAGVHDGSLYKGKLRVSETSCFFGEIRGKFDGHT----F-------QRILIQGRVNMNR 222 Query: 118 CIHGDQVLAQPLGADR----KGR------------------REARIVRVLVPKTSQIVGR 155 IH D V Q L KG ++V +L G Sbjct: 223 AIHDDVVAVQLLPVSSWRGPKGSAPLPESASEEDAITAGFVPTGKVVGLLSSNRRPFCGS 282 Query: 156 YFT-----------EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + P ++R+ I I + + VV + P + Sbjct: 283 LDEGELEQVKANMSDNVSILFQPKNNRIPR-IRISTRHVQDLMDKRLSVV-IDDWPLYSS 340 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 VG VEVLG + L H++P Y + +AV + + V ++ +A R+DL Sbjct: 341 FPVGHYVEVLGKIGDRDTEAMVILLEHDVPHYDFSEAVHDCLPKGQWSVTKDEEARRLDL 400 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 RDL +V++D RD DDA++C G + V IADV++++ T +D EA R TSV Sbjct: 401 RDLCIVSVDPLGCRDIDDALHCRVVNGNHLEVGVHIADVTHFLHEGTAMDDEAAKRSTSV 460 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y + I MLP++L+ LCSL DR + F + ++ S L Y Sbjct: 461 YLVDRRINMLPQLLTENLCSLVEAEDRYAFSILWEFDENLNVVRDWFGKTIIRSRGALYY 520 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER- 442 ++ D + + L EL L K REE G + S+E KF + E Sbjct: 521 GDAQRMIDNPADTSD----IAVSLRELMRLSKHFKAQREEDGALFLASQEFKFKVDNEHV 576 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 ++ Q +A+ +IEE M+ AN + A + E + L R H+ P+ A + L Sbjct: 577 NPTDMQVYQTFEANSMIEEWMLYANAAVATKVYESYPQWTLLRRHEPPAEGAFDTLNDAL 636 Query: 502 -AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP------ENRG 554 ++L + L + E D ++++ + R ++QA Y + Sbjct: 637 YSKLRVRLDDTTSLTLNKSLDKCEDPQDPYFNKLIRILTTRCLRQAQYFSSGGIPKDEFY 696 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLA+ Y HFTSPIRRY D+ +HR + + E H + E M + + Sbjct: 697 HFGLAMPIYTHFTSPIRRYADVLVHRQLAAAIGIE--------SISEQHMNAERMEAVAE 748 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVF---KGVISSVTGFGFFVRLDDLFIDGL 671 + + +A A RD + ++ + +G + V+ FV + + Sbjct: 749 NLNYRHEQAQRAGRDSQNLFTGFYLRNFEDGKIPDEEGYVVRVSETHVFVLVPKYGQESR 808 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE---AVNMDERKIDFSLISSE 728 + L+ RL DRV+V ++ ++ K+ F LI Sbjct: 809 IPREQLE-------------------TVPRLLDRVKVAIQLKRQGDVMRTKLVFRLIGLM 849 Query: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAK 788 R G + + + K + + G KAA+ + ++A+ Sbjct: 850 RDGEEGGVLVADDEAYDVIED-SEEASEDAPKASQGASATSVGAGDNDTKAAEPELKRAR 908 Query: 789 KPSAKTQ 795 +T Sbjct: 909 ADGTETA 915 >UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia RepID=DI3L1_HUMAN Length = 1054 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 161/726 (22%), Positives = 276/726 (38%), Gaps = 100/726 (13%) Query: 79 PERLDLVKGTVIGHRDGY---GFLRVEGRKD-------DLYLSS-EQMKTCIHGDQVLAQ 127 + ++G + ++ F+R++G D+ + + IHGD V+ + Sbjct: 238 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 297 Query: 128 PLGADR-KGR----------------------REARIVRVLVPKTSQIVGRYFTEAG--- 161 L + KGR R+V +L V + ++ Sbjct: 298 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 357 Query: 162 ------VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 V P D R+ I I Q + F VVV + + G V VLG Sbjct: 358 QGKNAQKILVTPWDYRIP-KIRISTQQAETLQ-DFRVVVRIDSWESTSVYPNGHFVRVLG 415 Query: 216 DNMGTGMAVDIALRTHEIPYI-WPQAVEQQVA----GLKEEVPEEAKAGRVDLRD-LPLV 269 + L + I I + +A ++ +V E + R DLR + Sbjct: 416 RIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVF 475 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID + D DD + G L V IADV+++V P++ +D EAR R T+ Y + Sbjct: 476 SIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRR 535 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWH 388 MLP VLS LCSL VDR + + + + ++ S +L Y Sbjct: 536 YDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQE 595 Query: 389 ILQG---------------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +L G ++ + + LV + +L ++ + + R+ G + E E Sbjct: 596 LLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVE 655 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTE 492 + ++ I + Q + H+ + ECMILAN A+ + E AL R H P E Sbjct: 656 VCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQE 715 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY---- 548 + R G + + D + D +L++M ++M A+Y Sbjct: 716 FFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTG 775 Query: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 E H+GLAL Y HFTSPIRRY D+ +HR + ++K++ E G +S Sbjct: 776 SCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK-----KMEIKGNLFSN 830 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG-----NVFKGVISSVTGFGFFV 661 +++ +L +H + + A + + + +C + D+ + GVI S+ G + Sbjct: 831 KDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLL 890 Query: 662 RLDDLFIDGLVHVSSLDNDYY----------------RFDQVGQRLMGESSGQTYRLGDR 705 + I G ++ + D RF + T+ L D Sbjct: 891 FIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDH 950 Query: 706 VEVRVE 711 V VR+ Sbjct: 951 VTVRIS 956 >UniRef50_Q0GXV6 Putative ribonuclease n=1 Tax=Lactococcus phage Q54 RepID=Q0GXV6_9CAUD Length = 528 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 167/508 (32%), Positives = 264/508 (51%), Gaps = 17/508 (3%) Query: 236 IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRL 295 + ++V + EV E GRVDL D + ID E +D DDAV EK G ++L Sbjct: 18 DFNTETLEEVKNVASEVLTEEWDGRVDLTDKLIFAIDSETTKDVDDAVSVEKLPNGNFKL 77 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 VAIADVS+YV + LDREA +RGTSVY V PMLP LSN +CSLN RL + Sbjct: 78 LVAIADVSHYVTEGSSLDREAYSRGTSVYVADFVSPMLPPALSNNICSLNDGKVRLALAA 137 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYK 415 EM + +G + +EAV+ ++TYT+V + + + + K L ++ L++ Sbjct: 138 EMEIDLRGNVKSTNLFEAVVKVK-QITYTQVNSVYKDNLHFYQDKGY--KMLWDMKELHE 194 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 +L R +RG I F S E + + + + + +R LIE M+ AN S ++ V+ Sbjct: 195 ILLAKRRKRGAIEFASSELYVSTHDDGSAKGLSKRERGTGEMLIESFMLQANESVSKTVQ 254 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEM 534 + +++R+HD+P I ++ +LG+ L + ++ + V P Sbjct: 255 ELVNISIYRVHDEPIDSKIERLAAISEQLGVTLNIKSDNITGKELQTFMNQVKGTPQETA 314 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 L LR+M QA Y EN GHFG+A ++Y+HFTSPIRRYPDLTLHR IK +L G Sbjct: 315 LSNFALRAMCQAKYGYENIGHFGIAAEAYSHFTSPIRRYPDLTLHRLIKDILKVTNHRPG 374 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF-MLDQVGNVFKGVISS 653 Y + + + + S AER+A +A R++ L ++ + + + G I + Sbjct: 375 ---------YWEKRIPLIAEQSSKAERKAVDAEREIEKKLIAEYVYKNMLDKKYLGTIVN 425 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 + V L + + G V++++++ND+ FD+ ++GES G T+ +GD++ + V Sbjct: 426 IKPNALIVELAN-GVKGGVNIATIENDFMGFDEFTYSMVGESHGLTFNMGDKINIVVADA 484 Query: 714 NMDERKIDFSLISSERAPRNVGKTAREK 741 + D +IDF I S N K+ + K Sbjct: 485 DPDLGRIDFEYIPSTFD--NYDKSFKRK 510 >UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=Tetrapoda RepID=Q8TF46-4 Length = 971 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 161/726 (22%), Positives = 276/726 (38%), Gaps = 100/726 (13%) Query: 79 PERLDLVKGTVIGHRDGY---GFLRVEGRKD-------DLYLSS-EQMKTCIHGDQVLAQ 127 + ++G + ++ F+R++G D+ + + IHGD V+ + Sbjct: 155 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 214 Query: 128 PLGADR-KGR----------------------REARIVRVLVPKTSQIVGRYFTEAG--- 161 L + KGR R+V +L V + ++ Sbjct: 215 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 274 Query: 162 ------VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 V P D R+ I I Q + F VVV + + G V VLG Sbjct: 275 QGKNAQKILVTPWDYRIP-KIRISTQQAETLQ-DFRVVVRIDSWESTSVYPNGHFVRVLG 332 Query: 216 DNMGTGMAVDIALRTHEIPYI-WPQAVEQQVA----GLKEEVPEEAKAGRVDLRD-LPLV 269 + L + I I + +A ++ +V E + R DLR + Sbjct: 333 RIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVF 392 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID + D DD + G L V IADV+++V P++ +D EAR R T+ Y + Sbjct: 393 SIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRR 452 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWH 388 MLP VLS LCSL VDR + + + + ++ S +L Y Sbjct: 453 YDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQE 512 Query: 389 ILQG---------------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +L G ++ + + LV + +L ++ + + R+ G + E E Sbjct: 513 LLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVE 572 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTE 492 + ++ I + Q + H+ + ECMILAN A+ + E AL R H P E Sbjct: 573 VCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQE 632 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY---- 548 + R G + + D + D +L++M ++M A+Y Sbjct: 633 FFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTG 692 Query: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 E H+GLAL Y HFTSPIRRY D+ +HR + ++K++ E G +S Sbjct: 693 SCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK-----KMEIKGNLFSN 747 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG-----NVFKGVISSVTGFGFFV 661 +++ +L +H + + A + + + +C + D+ + GVI S+ G + Sbjct: 748 KDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLL 807 Query: 662 RLDDLFIDGLVHVSSLDNDYY----------------RFDQVGQRLMGESSGQTYRLGDR 705 + I G ++ + D RF + T+ L D Sbjct: 808 FIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDH 867 Query: 706 VEVRVE 711 V VR+ Sbjct: 868 VTVRIS 873 >UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5A6_SCHJY Length = 859 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 161/694 (23%), Positives = 268/694 (38%), Gaps = 94/694 (13%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKGR 136 ++ L+KGT+ D + F+ VEG DD Y+ + D V+ + L Sbjct: 122 KKGTLLKGTLRIL-DSFHSAFVTVEGYADDFYIDGMIARNRALDNDTVIIETLKDRAPAS 180 Query: 137 -----------------------------REARIVRVLVP-KTSQIVGRYF--------- 157 A++V + +VG Sbjct: 181 ESVTVQGSSSSEDDLTADPALPTSVASSNPNAKVVAIAERWPRDSVVGILHPPGWSPNTG 240 Query: 158 ----TEAGVGFVVPDDSRLSFDILIPPD----------QIMGARMGFVVVVELTQRPTRR 203 +++ P R+ F ++ D + + G + V+ Sbjct: 241 SPRNSKSNYCIFQPQSKRMPFHLIHKNDLGELSGSNWREQITQNEGVIFSVKRKTWSATS 300 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 + K+ + +G + L + +P V + + +E +A R Sbjct: 301 RYPLAKVDKRIGHLSNIEASTQAILLERMVNSREFPDEVLDCLPSDNWCITDEERAKRRS 360 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 D ++TID E ARD DDAV C G +R+ V IADVS++V+P T LD EAR+R T+ Sbjct: 361 FLDQIVLTIDPETARDLDDAVSCIDNGDGTYRISVHIADVSHFVKPETALDNEARSRATT 420 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG-RLTGYKFYEAVMSSHARL 381 VY + IPMLP +L LCSLNP V+RL E V G L F ++++ + RL Sbjct: 421 VYLVQRAIPMLPTLLCERLCSLNPSVERLAFSVEWLVDRNGRELGPRWFGKSLIKTCCRL 480 Query: 382 TYTKVWHILQGDQDLREQYAPLVK---------HLEELHNLYKVLDKAREERGGISFESE 432 TYT+ +IL+G P+ + L+ + K L KAR + G +S + Sbjct: 481 TYTEAQNILEGKSWEEGVGKPISDGFKATDVEVSIRNLNIIAKALRKARFDNGAVSVNTS 540 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE-KAKEPALFRIHDKPST 491 E KF + + ++ E + DA++LIEE M+ AN S A + AL R H P Sbjct: 541 ELKFRLDEQGLPQKCEVYEHKDANRLIEEFMLFANRSVAEKISNHFPHVALLRRHAPPKE 600 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 + + F LA LG + G D + L E+++ M RS+++A Y Sbjct: 601 KQLGEFIRFLAHLGFDFDGSTSARFNDSLQRLREKFPSDITELIENMAARSLQRAEYFCT 660 Query: 549 ----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 H+ LA Y HFTSPIRRYPD+ +HR ++ + Sbjct: 661 GSTDSVSEWLHYALAFSHYTHFTSPIRRYPDIIVHRLLECAVQDCDS-----------SL 709 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV------FKGVISSVTGFG 658 ++ ++ HC+ + A A D ++ + ++ + Sbjct: 710 KTKQCNEIATHCNTKKENARLAQEDSNFVFLSVYLNKYSEEHKVPAMPVRVFVTRILDHS 769 Query: 659 FFVRLDDLFIDGLVHVSSLDN-DYYRFDQVGQRL 691 V + + + + + + D + + Sbjct: 770 IDVHIPVFALTRRISFLDEPSLESFEVDDSEEHV 803 >UniRef50_Q6SG71 RNB-like family protein n=4 Tax=Bacteria RepID=Q6SG71_9BACT Length = 495 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 181/513 (35%), Positives = 283/513 (55%), Gaps = 22/513 (4%) Query: 218 MGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 + + + IP+ W + ++ ++A +K R DL +P +TIDG DA+ Sbjct: 2 NELENTISQVIEENYIPFEWNEKIDNELADIKLN----KNLPRKDLTKVPFITIDGADAK 57 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 DFDDAV+C K + + L VAIADV+ V+P T LD EA RGTS+YFPS+VIPMLPE + Sbjct: 58 DFDDAVHCVKNKS-SFTLSVAIADVAELVKPGTALDNEAIERGTSIYFPSKVIPMLPEKI 116 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR 397 SN LCSL P R ++CE+ S+ G L Y F EA + SH R+TY +V L+ + L Sbjct: 117 SNNLCSLVPNEIRNVLICEIVFSNSGDLQSYNFLEARIKSHKRMTYIEVDKYLKSNSTLS 176 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHK 457 + + + L L +L K R +R + E +E N E +++ I +R +H+ Sbjct: 177 KS---VEDSIRSLSELTHILLKKRSQRQALEIEGQEPLLRINNEGKVDEITLPKRLFSHQ 233 Query: 458 LIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR 517 +IEE M+ AN+ AA F+ K + ++RIH++P + S ++ + G K P Sbjct: 234 MIEEAMLAANVCAANFMNKHYKFGVYRIHEEPEELKLESLKNFFSIKGFS--DSYKKIPL 291 Query: 518 DY-AELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDL 576 D + L ++ + LQT++L+S+K+A Y + GHFGL L+ Y+HFTSPIRRYPDL Sbjct: 292 DLINQCLSYAREKKLNKALQTVVLQSLKRAEYSTKEVGHFGLQLERYSHFTSPIRRYPDL 351 Query: 577 TLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC 636 HR IK +L K G + EE+ + S ER A+ A+R V + C Sbjct: 352 MTHRLIKNILNK-----------GDLAINKEEIEEECVEMSDLERMAERASRQVTQQMIC 400 Query: 637 DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESS 696 ++ VG+ F V++ + FG F +D+ ++ GL+HV+ L +D Y +D+ L G+ + Sbjct: 401 YYLKQYVGSDFNAVVTGIAEFGLFAEIDNFYVSGLIHVTDLPSDRYFYDKEANILKGKKT 460 Query: 697 GQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 G+++RLG + V + ++ +ERKI ++ Sbjct: 461 GRSFRLGQNILVTIANISPEERKITLVPKEQKK 493 >UniRef50_A1SWZ6 Exoribonuclease II n=2 Tax=Psychromonas RepID=A1SWZ6_PSYIN Length = 656 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 175/665 (26%), Positives = 293/665 (44%), Gaps = 43/665 (6%) Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + E + +G V GYGFL + K ++ +MK +HGDQ+ A G K Sbjct: 15 IQEDIPKRQGKVKATDRGYGFLETDKGKR-FFIPPSEMKKVLHGDQINAFIRGKGDKSTA 73 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM---GARMGFVVVV 194 E ++ ++ + R + ++P + L I Q + G + G V V Sbjct: 74 EPNQLK--KTGSAVFIARLVIKQKNISIIPKNPLLKGFFKIKGSQSLQSRGYQDGDWVKV 131 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 EL + +I+E + D + + TH + P+ ++ + Sbjct: 132 ELVSHALEGNGFLTQIIEKIADASDPFAYRLLTVATHNLANKAPE------FDHPWKIID 185 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 + R DL P TIDG + +D DDA+Y E G W+L VAI+D S YV ++ +D Sbjct: 186 PQLS-RSDLTKTPFFTIDGVNTQDMDDALYIEADENG-WKLTVAISDPSAYVPENSDMDA 243 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYK-FYEA 373 EA+ R ++Y P+ +PMLP LS+ LCSL R + C + ++ KG + G FY A Sbjct: 244 EAKRRAFTLYLPNFNVPMLPRDLSDSLCSLKEGEKRATLCCTIHINKKGEIEGEPAFYGA 303 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAP---LVKHLEELHNLYKVLDKAREERGGISFE 430 + SH RL YT V + L+ ++ + + P L + L L +L + R + + Sbjct: 304 WIKSHYRLNYTDVSNYLENEELSNDCWKPSTQLAEQLRTLDSLSLKRLQWRTDNNAVFKN 363 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 + N + I I R A++L+EE MI ANI A F+ K K+ +F H S Sbjct: 364 QPDYTLKLNNKGEISEILCEPRRSANRLVEESMIAANICAGDFLAKHKQQGVFNTHSGFS 423 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 +E + S+L+E G+E Y ++ + + L L + + A Sbjct: 424 SERLGKVVSLLSEFGIESDIQTLATVTGYTKIRQQT-NLLHNSYLDHRLRKLLSYADIKN 482 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 HF L + YA +TSPIR+Y DL HR IK +L KE Q + Sbjct: 483 TPEAHFTLGVDHYATWTSPIRKYGDLLNHRLIKSVLLKEDNIQIDN-------------- 528 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN--VFKGVISSVTGFGFFVRLDDLFI 668 ++GQ + A + A RDV + L ++ +QV + +K I + G V++ + Sbjct: 529 EIGQVLNAARKLQRLAERDVNNILYSQYLKNQVESKWRYKAEIFDIIKAGIRVKIQENGA 588 Query: 669 DGLVHVSSL---DNDYYRFD---QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + S L +D + D +G+ ++ + + +LGD ++V + V ++ ++ Sbjct: 589 TFFIPCSLLCKDSSDATKIDCNQALGKVIIAQQT--ELQLGDVIDVMLNNVKVESGQLIG 646 Query: 723 SLISS 727 L S Sbjct: 647 KLAES 651 >UniRef50_Q1AVL2 RNAse R n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVL2_RUBXD Length = 535 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 187/575 (32%), Positives = 284/575 (49%), Gaps = 46/575 (8%) Query: 154 GRYFTEAGVGFVVPD--DSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 P D R IL+ GA G +V+V + R+ G++V Sbjct: 3 AVLVRRGKYSVADPLFVDER--RPILVARKLRRGAEAGDLVLVRARE---RKGSLRGEVV 57 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 V+G + + + + +P+ VE++ + E R DLR LP VTI Sbjct: 58 RVIGPSSDPRNVYEALFASIGVSRSFPRGVEEEAEAVAGRSFGE----RRDLRRLPTVTI 113 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DGEDA+DFDDA+ + GG+RLWV IADV++YV P LDR+A RG SVY P V P Sbjct: 114 DGEDAKDFDDAISILR-EDGGYRLWVHIADVTHYVDPGGALDRQALYRGNSVYLPGTVAP 172 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLP LS +CSL P DR + E++VS +G + G+K Y +++ S ARLTY V L+ Sbjct: 173 MLPARLSADVCSLRPHADRAAVTVEISVSGEGEVRGWKVYRSLICSDARLTYEAVDAFLE 232 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 G ++ + + + L + L RG + ES E ++ + E Sbjct: 233 GRGEIEQP-----ELVRTAFELSRRLKTNAAVRGKLELESREPEYEVDEEGVPVAASMRP 287 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 A +LIEE MILAN+ AR + + + A+FR+H++PS E + LA +G+ + Sbjct: 288 STPARELIEELMILANVCVARELRRRRG-AVFRVHERPSPEDLELLAERLAAVGVRV--- 343 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 +P P + + + R L ++LRS+ +A+Y P N GH+GLAL+ Y HFTSPIR Sbjct: 344 -EPTPENLGTIARMLKSR----ALGYLVLRSIPRALYSPGNVGHYGLALEDYTHFTSPIR 398 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 RY D+ +HR LL E E + ++ +H S E ++ R Sbjct: 399 RYADVLVHR---ALLGDELP---------------ENLPEVAEHISEREWQSMICERTAD 440 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 ++ M D+VG VF+G + S T FG FV + + GLVH S L ++ + G L Sbjct: 441 EYTLMWLMRDRVGEVFEGTVVSTTSFGLFVEM-ETGATGLVHASKLPG-WWELEPSGVVL 498 Query: 692 MGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + G +YR+GDRV V + + ++ + ++ Sbjct: 499 SNDEIGASYRVGDRVLVELLDITPLLQRAELRVVK 533 >UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XYF0_BRAFL Length = 813 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 140/591 (23%), Positives = 237/591 (40%), Gaps = 47/591 (7%) Query: 136 RREARIVRVLVPKTSQ-IVGRYFT----EAGVGFVVPDDSRLSFDILIPPDQ-------I 183 ++ A++V + K S+ G + P D RL + +P + Sbjct: 193 QKTAKVVYIYEKKHSRACTGHLKKLDDKDREKVLFSPIDHRLPR-LKVPLEDCPAGFKER 251 Query: 184 MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVE 242 F+ + +T A ++ + LG+ + L + + + + + V Sbjct: 252 PEDHAKFLFIARITDWKEDSGFAEARLAKSLGEAGQIEPETEGLLVENGVDFSEFSEVVL 311 Query: 243 QQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q + L +P E R DLR + TID ARD DDAV C K G + + V IAD Sbjct: 312 QCLPQDLPWSIPAEEFENRRDLRLDCIFTIDPATARDLDDAVSCNKLDDGTYEVGVHIAD 371 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSY+++ +T LD A R TSVY +VIPMLP +L LCSLNP +RL ++ Sbjct: 372 VSYFIQENTALDLTAACRATSVYLVQKVIPMLPRLLCEQLCSLNPAEERLAFSVIWKLTE 431 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ-----------YAPLVKHLEEL 410 G + F ++ S +L+Y I+ L Q + + + L Sbjct: 432 TGDVLDEWFGRTIIRSCVKLSYDHAQSIIDNPDQLPTQEQLPTISDGHSIQDVAERVLNL 491 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANIS 469 + + + L K R + G + + + F + E Q D+++LIEE M+LAN++ Sbjct: 492 YKISQNLRKKRFDGGALRLDQPKLAFSLDPESGLPNGCSVYQIRDSNRLIEEFMLLANMA 551 Query: 470 AARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAE--LLESV 526 A + + E A+ R H P + + +G+ L + + + V Sbjct: 552 VAHKIHESFPERAVLRRHPPPQPKMVEDLVKTCGTMGINLDISSSGALHQSIARYIGDDV 611 Query: 527 ADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 + +L M + M+ A Y + H+ L + Y HFTSPIRRY D+ +H Sbjct: 612 ETQATFYILTAMASKPMQLAKYFCSGCLPEEGMYHHYALNVPLYTHFTSPIRRYADVLVH 671 Query: 580 RAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM 639 R + L S EE+ + HC+ + + AD F+ Sbjct: 672 RLLGACLGCGPA----------VEKSAEELQGMTDHCNDRKDASKRVQEASADMFFASFV 721 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 + G++ V V + L + + +++ Y F++V R Sbjct: 722 KECGPLEEDGMVMGVLDQAVDVLVWRLGVVKRAYCNAIPLKSYDFEKVNGR 772 >UniRef50_Q7MQZ6 RIBONUCLEASE n=1 Tax=Wolinella succinogenes RepID=Q7MQZ6_WOLSU Length = 653 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 180/603 (29%), Positives = 274/603 (45%), Gaps = 32/603 (5%) Query: 43 ELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE 102 L I+ ++ + + G L + + L G + R+G GFL Sbjct: 9 ALGIKTKDIPRSFLALVETLREKGALQAKGERIFL---DLAFRVGVLDISREGVGFLESF 65 Query: 103 GR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAG 161 G DL + +K GD VLA+ + + + GR A++V VL K + +V AG Sbjct: 66 GSSGKDLLIQKSDLKGAFKGDVVLARRVYSHKGGRPSAKVVEVLEKKNAILVAYLDQHAG 125 Query: 162 VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTG 221 + + LS + + V+ +++ + G+I+EVLG Sbjct: 126 RIEALDIKNGLSLPLNASAKSLKALPPQTVIRLDVRE---------GRIIEVLGVLSDPR 176 Query: 222 MAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 + I+L +P+ E+Q +V R D R LP TID DA+D DD Sbjct: 177 VDEKISLALFNKSEPFPRECEEQAESFGRKVEASMYPARQDFRSLPFCTIDPIDAKDHDD 236 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 AVY + K L+VAIADVS YV P +P+D+EAR RG ++Y P + IPMLP LS + Sbjct: 237 AVYFDAKES---ILYVAIADVSEYVTPHSPIDKEARVRGFTIYLPHKSIPMLPRNLSENI 293 Query: 342 CSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY 400 CSL PQ DRL V ++ + + +EA++ S +L+Y +V L+ + Sbjct: 294 CSLKPQEDRLAYVWKIRLHKRTALPLKAELHEAIIRSKQKLSYEEVDEFLEEPKANSTIL 353 Query: 401 APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 L + L L+ K L R ERG F +EE + + + + I + +H LIE Sbjct: 354 KELQEPLLNLYARTKKLRAKRLERG-YEFFNEENRLLMDENLNLISIVSEKETPSHSLIE 412 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 ECM+LANI +A+ +EK +FR+H++P E I L LGLE A Sbjct: 413 ECMLLANIYSAKHLEK----GIFRVHEEPKLEKIEELLWDLRSLGLEAKPKETLHA-TIA 467 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 + + + + M++RS QA Y + GHFGL + Y+HFTSPIRRY DL LHR Sbjct: 468 TIQKEAEAKGIRTEVDRMIIRSQAQARYSHQKIGHFGLGFEEYSHFTSPIRRYSDLVLHR 527 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 +K L E+ + ++ + L S ER + D D L Sbjct: 528 LLKAELKGEK---------RKMEFYLDALAPLCDSLSALERESARVEMDYKDRKYARLAL 578 Query: 641 DQV 643 +++ Sbjct: 579 ERL 581 >UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7S1B6_NEMVE Length = 766 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 163/738 (22%), Positives = 278/738 (37%), Gaps = 120/738 (16%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR--- 133 +R +L+KG + + + ++ V G+K D+YL + GD V ++ Sbjct: 39 KRGELLKGALRISKRNFEMAWVSVAGQKRDVYLEGVLARNRALDGDIVALNISPRNKWKL 98 Query: 134 -----------------------------------KGRRE---------ARIVRVLVPKT 149 + E A +V ++ K Sbjct: 99 MKHEYDAHGASHEGNKTPSKGGTTPHTPESSKNKQRKNEEIPDAYLQQTAHVVYIIEKKH 158 Query: 150 SQI----VGRYFTEAGV---GFVVPDDSRLSFDILIPPD-------QIMGARMGFVVVVE 195 ++ + + G G P DSRL + IP + V Sbjct: 159 TRAASGNLKPFQYNQGDVPDGLFSPSDSRLPR-MRIPHAKCPLGFFDRPQDFASTLFVGR 217 Query: 196 LTQRPTR----RTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAG-LK 249 +T+ P A G+I LG+ + I P +P + Sbjct: 218 ITEWPENAPMDNFFATGEISRSLGEAGEIEPETQGIFFEYGIDPGPFPDEALDCLPKETP 277 Query: 250 EEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPS 309 +PE A R D RD + TID ARD DDA++C++ G + V IADVS++V+ Sbjct: 278 WSIPETEFAHRRDFRDECVFTIDPLTARDLDDALHCKRLSDGLIEVGVHIADVSFFVKTG 337 Query: 310 TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYK 369 TPLD A+ R TS Y V+PMLP L LCSLNP DRL ++ +G + Sbjct: 338 TPLDDIAQERATSTYMVQTVVPMLPRRLCEELCSLNPDEDRLTFSVVWIMTDQGEIKSDW 397 Query: 370 FYEAVMSSHARLTYTKVWHILQ------GDQDLR-----EQYAPLVKHLEELHNLYKVLD 418 ++ S ++ Y ++ D +L + +VK + L + + L Sbjct: 398 KGRGIIRSRVKMAYEHAQEMIDKPNKKWSDSELPPIAEGTDVSEIVKRVNLLAKIARQLR 457 Query: 419 KAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEK- 476 + R E G + + + +F + E Q+ +++KLIEE M+LAN++ A + K Sbjct: 458 RNRFENGALRLDQVKLQFDLDKETGMPIGYHVYQQRESNKLIEEFMLLANMTVAHHIYKA 517 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV-ADRPDAEML 535 + AL R H KP + + + LG++ N + L + E+L Sbjct: 518 FPDMALLRRHPKPHEKQMEDLLELCRNLGIKY---NANSSKSIQVSLAQFPSGSAQHEIL 574 Query: 536 QTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589 + ++ MK A+Y + E GH+ L++ Y HFTSPIRRY D+ +HR + L Sbjct: 575 VQLTMKPMKNALYFCAGTVEEEEYGHYALSVPLYTHFTSPIRRYADVIVHRLLAASLELA 634 Query: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649 + + + + HC+ + A A ++ F+ + G Sbjct: 635 EPLDKDAVDV----------DSIAGHCNDCKLAAKTAGELSSELFFAIFVRECGPLEEDG 684 Query: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSLDN--DYYRFDQVGQ-----RLM---------G 693 + + F V + L + ++ Y +D+ Q L+ G Sbjct: 685 YVLGIMDMSFDVFVPALGVTKRIYCKFCPGVKRYVPYDRKEQVQPEITLVWATGTEKKPG 744 Query: 694 ESSGQTYRLGDRVEVRVE 711 + Q + +V V + Sbjct: 745 KDVKQVLHIFSKVHVILT 762 >UniRef50_C3XLE6 Ribonuclease n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLE6_9HELI Length = 719 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 176/685 (25%), Positives = 300/685 (43%), Gaps = 69/685 (10%) Query: 53 EGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV--EGRKDDLYL 110 E L ++ R ++ R+ Y L + + G V ++GYGF+ +G D + Sbjct: 20 ESFLNLLESL-RVFDVLEVRKNRYVLKRKFCI--GKVELTKEGYGFVIPLPKGNGRDWLV 76 Query: 111 SSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDS 170 +K GD VL++ L R A+++ +L K S ++ + + Sbjct: 77 EKHLLKGAQKGDIVLSKMLNKSHNTRIYAKVIEILETKQSSVLCYLEKYKLDCMAISIPN 136 Query: 171 RLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 + + I + + + G+I+E+LG + IAL Sbjct: 137 EIPYKIKATQKSLKTLPPNTL---------LKLNPKNGEILEILGALSDPQIDETIALSL 187 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 ++ + E + K V + R D LP ID A+D DDA++ +++ Sbjct: 188 YDRQESFSLQAELEAESFK-PVRLKDFKERADCTHLPFCAIDPVGAKDHDDAIFYDEENS 246 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 L++AIADVSYYV+ + LD EA+ RG SVYFP + IPMLP LS LCSL+ R Sbjct: 247 ---TLYIAIADVSYYVKKDSALDLEAKMRGFSVYFPHKSIPMLPRTLSENLCSLSAGELR 303 Query: 351 LCMVCEMTVSSKGR-LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEE 409 L MV ++ + + + + +EA++ +LTY +V +L+ + + L L Sbjct: 304 LAMVWKIRLHKCTKAVLNSELFEAIIKVSQKLTYEEVDLLLESKKS-KTIKTNLKSMLFA 362 Query: 410 LHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS 469 L++L + L + R + G F +++ + ++ ++ + +H+L+EECM+LANI Sbjct: 363 LNDLAQKLRQKRLKNG-FDFLGDKSVMELDKNLELKDLKLQSQTLSHQLVEECMLLANIQ 421 Query: 470 AARFVEKAKEP----------ALFRIHDKPSTEAITSFRSVLAELGL----ELPGGNKPE 515 +A K P ++R+H+ P E+I + LG+ ++P K Sbjct: 422 SALLQSKQSTPSTQRDERLKLGIYRVHNAPKLESIQDLFTEFRLLGIYHKKKIPKYTKDF 481 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 ++ E+ A + +++RSM+QA Y N GHFGL +SY+HFTSPIRRY D Sbjct: 482 HKEILEIQALTKHSNMAAEVDKLIIRSMQQATYASHNIGHFGLGFESYSHFTSPIRRYSD 541 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 L LHR +K + S+E + Q+ + S ER + D D Sbjct: 542 LLLHRILK-------------DKIQFNPNSLESLPQICEDLSQKEREVAKIELDFKDRKF 588 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 ++ ++G + GVI + LV +++ R L G Sbjct: 589 ARYLNKKIGQAYVGVII------------NDKSPELVALTTPPLQGARV----VCLKGV- 631 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKI 720 G Y +V V++ VN+ K+ Sbjct: 632 -GVKY---QKVRVQILDVNLATAKV 652 >UniRef50_C9RQ37 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQ37_FIBSS Length = 812 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 185/742 (24%), Positives = 312/742 (42%), Gaps = 75/742 (10%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +PS E I+ L P +L L + + Q ++ L M G L + + Y Sbjct: 5 LPSEEQIIAILRDE--PMVGSQLRSALGLPKK-QKMAFKQLLADMIERGVLKRSAHKEYQ 61 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 L + L E +++ + K G V R R+ Sbjct: 62 LGDGEPL-----------------EDKRE-----KRRKKLAEQG--VEDNRRPGARSRRQ 97 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 + T G + V + + Q G + G + L Sbjct: 98 TEK-----DSGTRVKRGILHQTGDEDWQVTEIDTGKVYEMCHRRQAPG-KEGETISFTLY 151 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTH----EIPYIWPQAVEQQVAGLKEEVP 253 P + + K+ + D + +P + A+E+ VA + + Sbjct: 152 PHPKLKHSYLAKVDR---SAEIMNVTWDEVKKKFMEESNLPKGFSPAIEKYVASITDP-T 207 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E+ GRVD R L ++ ID E A D DDA+ E+K GG++L V IADVSYYV + LD Sbjct: 208 EKDFKGRVDYRKLDILCIDPEGAMDHDDAISVERKPNGGYKLGVHIADVSYYVPEGSDLD 267 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA R + Y P +PMLPE LS+G+CSL+ VDR C + + + + G+ F+ + Sbjct: 268 EEALERSYTQYLPWTAVPMLPEKLSSGVCSLHEGVDRCAFTCMIDLDKEANVLGWDFHRS 327 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++ +TY + +++ D ++ L + +L + R + G + F++ E Sbjct: 328 VVNITKGITYQQAVKMMEEGDD----------SIKALAEVTALLKRNRTKDGLLEFQTTE 377 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 FN +I + +D++ +EECM++AN A+ +++ K ++RIH+ P T+ Sbjct: 378 YGCKFNENGEPVKIFPREHDDSNSWVEECMLIANNCCAKELKQRKLQGIYRIHEAPDTKD 437 Query: 494 ITSFRS-----------VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 I +L +LG G P + V E L +LRS Sbjct: 438 IMELYYMYPDLFKDAPVMLRDLGKPRSGDTNLNPVAFKLYEHLVKRAAGDETLTNRILRS 497 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M++A YD + GHF L Q Y+HFTSPIRRY DL HR E +G + Sbjct: 498 MQKAHYDSNSFGHFALNWQDYSHFTSPIRRYADLWCHR--------ELARKGKEIDAERV 549 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + +E + S E + + R C + ++G+ F+ ++ + +G +V Sbjct: 550 NSVIE----VCDLISANEIKNMKVERISIKVCSCWILKSRIGDSFEASVTGIEEWGIYVS 605 Query: 663 LDDLFIDGLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 +DD +GLV + +D+Y F+ G+ SG+T+R GD+V V++ V+ + D Sbjct: 606 IDDPIAEGLVRYRDITGDDFYVFNPDQGLAFGKRSGRTFRRGDKVMVQLLRVDPLRGQAD 665 Query: 722 FSLISSERAPRNVGKTAREKAK 743 FS+ +T + + Sbjct: 666 FSITEKLSPEPKKRRTREDTER 687 >UniRef50_A5F0G1 Exoribonuclease 2 n=195 Tax=Bacteria RepID=RNB_VIBC3 Length = 678 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 160/656 (24%), Positives = 281/656 (42%), Gaps = 38/656 (5%) Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + E L +GT+ G+GFL V+ K ++ MK C+HGD+V+A + R Sbjct: 15 IQETLPKKEGTIKASDKGFGFLEVDS-KTSYFVPPPYMKKCMHGDKVVAFIRTENE--RE 71 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA-----RMGFVV 192 A ++ ++ +GR G V PD +L + + G + G V Sbjct: 72 VAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLK-KLSLKAKTKKGLNEADFQEGDWV 130 Query: 193 VVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V L + P + +I + D + L +++P P ++ + Sbjct: 131 VAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDD------WQ 184 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + ++A R DL LP VTIDGE +D DDA+Y ++ G + L +AIAD + Y+ P Sbjct: 185 LKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDE 244 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL-TGYKF 370 +D+ AR RG ++Y P + IPMLP L++ LCSL R + C +T+ G + +F Sbjct: 245 MDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRF 304 Query: 371 YEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 + A + SHARL Y V L+ G + + + + + +L+ + E + Sbjct: 305 FAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWCETHAVVFP 364 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + + +F +A+ + I R A++L+EE MI ANI A + ++ +F H Sbjct: 365 DRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGF 424 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 E + ++A G + L + L + + + Sbjct: 425 KAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG 484 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 + HF + L YA +TSPIR+Y D+ HR +K + + Q Sbjct: 485 NQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPD------------- 531 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV--FKGVISSVTGFGFFVRLDDLF 667 +G+ ++ + A R+VADWL + D+ F+ I + G VRL + Sbjct: 532 ETVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENG 591 Query: 668 IDGLVHVSSLDNDYYRFD---QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + + + ++ R + + G L+ + Y+LGD +E+ + VN + R + Sbjct: 592 AMAFIPGALILDNKERIECNGEDGTILIDKE--VVYKLGDVLEIVLTEVNQENRSL 645 >UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E47D53 Length = 807 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 146/622 (23%), Positives = 264/622 (42%), Gaps = 57/622 (9%) Query: 137 REARIVRVLVPKTSQIVGRYFT-----EAGVGFVVPDDSRLSFDILIPPD-------QIM 184 + AR+V + K S+ + A P D R+ I IP Q Sbjct: 189 KTARVVYICEYKHSRAASGHLKLPSNPRAPDVMFAPTDHRVPR-IYIPRKECPATFSQRP 247 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQ 243 + + ++ P A G ++ +G L H I + V + Sbjct: 248 QDYANTLFIAQIIDWPRISAFAKGHLLYSIGQAGEVEAETTAMLIEHGIDSSEFTTEVLE 307 Query: 244 QVAGL-KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + +P E + R DLR + TID ARD DDA++C+ G + + V IADV Sbjct: 308 DLPKERPWRIPAEELSQRRDLRSECIFTIDPTTARDLDDALHCKALGDGIYEMGVHIADV 367 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 SY+V+ T LD+ A +R TSVY +VIPMLP +L LCSLNP +RL M ++ + Sbjct: 368 SYFVKEDTSLDKTASHRATSVYLVQKVIPMLPRLLCEELCSLNPDQERLTMSFIWRMTEE 427 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY-----------APLVKHLEELH 411 G + +V+ S +L+Y +++ ++ + + + + + Sbjct: 428 GEILQEWCGRSVIRSCVKLSYLHAQDMIENWEEKGDDIVLPEITNGFGRNEVAQAVLNMQ 487 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEECMILANISA 470 + L K R + G + + + ++ NAE + Q+ D+++L+EE M+LAN++A Sbjct: 488 KIASNLRKKRFDGGALRLDQVKLQYSLNAETTLPNGYSVYQQKDSNRLVEEFMLLANMAA 547 Query: 471 A-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR 529 A R + + A R H P + + ++ LGL++ G + + + ++ Sbjct: 548 AHRIFKAEPQRAFLRRHPPPKEKMMDDLATLCESLGLDMDGTTAGKLQASLNRYCTSEEQ 607 Query: 530 PD--AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 ++L + + M++A Y D E H+ L + Y HFTSPIRRYPD+ +HR Sbjct: 608 AKCLLKVLTVLYSKPMQKARYFCCASLEDEEMYRHYALNVPLYTHFTSPIRRYPDILVHR 667 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 + LA + + E + + C+ A+ A E + +D C F+ Sbjct: 668 MLASSLACGPVMERDP----------ERLQRQAMRCNDAKDSAKEVSDKSSDLFFCQFVK 717 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY------RFDQVGQRLMGE 694 + V K ++ +V F V + +L V+ +++ ++ ++ E Sbjct: 718 ECGPLVEKAIVMAVLDRSFDVLIINLGQVKRVYCNAIPLKKLIAVPIAKYYELTLEWEDE 777 Query: 695 SSGQ----TYRLGDRVEVRVEA 712 + + ++ +V V + A Sbjct: 778 AGSKGVTQVIKMFSQVTVELTA 799 >UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccharomyceta RepID=RRP44_YEAST Length = 1001 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 251/630 (39%), Gaps = 62/630 (9%) Query: 126 AQPLGADRKGRREARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDIL 177 A +K + A++V + Q VG+ + FV+ D L + Sbjct: 377 AMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLP-KVR 435 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI- 236 I + + +V+ + PT +G V LG + L H++ Y Sbjct: 436 IRTRRAAEL-LDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRP 494 Query: 237 WPQAVEQQVAGL------------KEEVPEEAK-AGRVDLRDLPLVTIDGEDARDFDDAV 283 + + V + + E V ++ R DLRD + +ID D DDA+ Sbjct: 495 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDIDDAL 554 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 + +K G W + V IADV+++V+P T LD E RGTSVY + I MLP +L LCS Sbjct: 555 HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 614 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 L P VDR + + F ++V+ S +Y + + E L Sbjct: 615 LKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDE----L 670 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIE-RIEQTQRNDAHKLIEEC 462 + L L L + R E G ++ S E K ++E +E + + L+EE Sbjct: 671 TMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEF 730 Query: 463 MILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVL---AELGLELPGGNKPEPRD 518 M+LANIS AR + + A+ R H P + +L + + L + Sbjct: 731 MLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLE-----SSKA 785 Query: 519 YAELLESVADRPDA---EMLQTMLLRSMKQAI------YDPENRGHFGLALQSYAHFTSP 569 A+ L+ D D +++ M R M A Y + H+GLA+ Y HFTSP Sbjct: 786 LADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSP 845 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRY D+ HR + + E H +M + ++ + R A A R Sbjct: 846 IRRYCDVVAHRQLAGAIGYEP--------LSLTHRDKNKMDMICRNINRKHRNAQFAGRA 897 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND--YYRFDQV 687 ++ M + G + V G V + ++GL+ + +L D FD+V Sbjct: 898 SIEYYVGQVMRNNESTE-TGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEV 956 Query: 688 GQRL----MGESSGQTYRLGDRVEVRVEAV 713 +L + + D+VEV+V +V Sbjct: 957 EYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 986 >UniRef50_A0Z0P5 Exoribonuclease R n=6 Tax=Bacteria RepID=A0Z0P5_9GAMM Length = 688 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 183/640 (28%), Positives = 284/640 (44%), Gaps = 35/640 (5%) Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG----- 135 + + TV G ++ YGF V G ++++ ++M + GDQV A +KG Sbjct: 43 EKEYAEATVKGTQNRYGFAVV-GDGREIFIPPDEMLKVLPGDQVRICIRPATQKGKGGKK 101 Query: 136 ----RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 R A I R++ + VG + FV PD L + IPP GA+ G Sbjct: 102 SQDGRTVADIERLIESTLDRFVGTIVVKGKAVFVEPDLHDLKRWLFIPPHARNGAKPGDK 161 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 V L + P + K K++ V G G+ + + W EE Sbjct: 162 VDCALMRHPFKDGKPSAKVLSVFGSPGTPGLENRYCAARAGLTWAWSDKESATWIKFAEE 221 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + RVDL L V+ID +D DDA+Y E G W L+VA+AD + Y+ Sbjct: 222 REPLSDPERVDLSHLNFVSIDAARTQDIDDALYAEVTSEG-WVLYVAVADPTAYLDGMEG 280 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD + TS YF V+PMLPE + C+L+ R +VC++ VS G++ Y+F Sbjct: 281 LDETLTSIATSTYFHGDVLPMLPEAIGRDFCALSEGEARPSLVCKINVSDAGQVGSYEFI 340 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 +A + S A+LTY V + G D Q LE L Y+ L RE + + Sbjct: 341 QAKIQSKAKLTYAAVDRYVTGHND---QLIAWSNPLEALVQAYRALRSHRESHELVMEDR 397 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E ++ N ER+I IE ++ + L+EECMI AN SAA F+ ++ F +H Sbjct: 398 TEYRWQLNDERQIGTIETAEKLASQHLVEECMIAANRSAAHFLAMSEATGPFVVHPGFRK 457 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + + + L +L Y ++ ++ + P L+ M+ R + +A++ Sbjct: 458 DRASETQEFLKRYLPDLTDTTTHTVAGYQQIFAAL-NAPHTLPLRGMVNRLLTRAVFSTS 516 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 H G+AL +Y +FTSP+R+Y D HR IK +L+K+ G + Sbjct: 517 PAEHMGMALNAYTNFTSPLRKYVDFLTHRQIKRVLSKKPGDAVTDLQL------------ 564 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQ---VGNVFKGVISSVTGFGFFVRLDDLFI 668 Q + A R AT+ WL +++ + G I+ VT GF VRL L + Sbjct: 565 --QSTASAIARGRGATQAAERWLTGNYLDRCKSSGETRYTGEIAHVTSAGFTVRLAGLGL 622 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 +G V + D + + FD+ L SS + +LG VEV Sbjct: 623 EGQVDLRK-DPEKFSFDKWTASLT--SSTRKLQLGQTVEV 659 >UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID=DI3L2_HUMAN Length = 885 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 127/600 (21%), Positives = 239/600 (39%), Gaps = 51/600 (8%) Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTE---------AGVGFVVPDDSRLSFDILIPPD 181 +++ +R A++V +L K S+ + P D R+ I +P Sbjct: 225 SEKSLQRSAKVVYILEKKHSRAATGFLKLLADKNSELFRKYALFSPSDHRVPR-IYVPLK 283 Query: 182 Q-------IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 + + + A+G++ + LG + L + + Sbjct: 284 DCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVD 343 Query: 235 Y-IWPQAVEQQVAG-LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 + + V + + L +P E + R DLR + TID ARD DDA+ C+ G Sbjct: 344 FSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGN 403 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 +++ V IADVSY+V + LD+ A R TSVY +V+PMLP +L LCSLNP D+L Sbjct: 404 FKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLT 463 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL-----------REQYA 401 T++ +G++ F ++ S +L+Y +++ + Sbjct: 464 FSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSE 523 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIE 460 + + + LH + K L + R G + + + F + + + +++KL+E Sbjct: 524 EVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVE 583 Query: 461 ECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+LAN++ A + + E AL R H P T ++ ++GL + + Sbjct: 584 EFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKS 643 Query: 520 --AELLESVADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPI 570 + E+L M R M+ A+Y DP H+ L + Y HFTSPI Sbjct: 644 LTQTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPI 703 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RR+ D+ +H + L + + + + + HC+ + Sbjct: 704 RRFADVLVHSLLAAALGYRE----------RLDMAPDTLQKQADHCNDRRMASKRVQELS 753 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 + + + ++ + F V + + ++ ++L + F +VG++ Sbjct: 754 TSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKK 813 Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR 133 +R L++G + + + F+ D+++ ++GD V+ + L + Sbjct: 64 KRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEH 120 >UniRef50_A9EZ35 Ribonuclease R n=2 Tax=Myxococcales RepID=A9EZ35_SORC5 Length = 648 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 180/669 (26%), Positives = 283/669 (42%), Gaps = 47/669 (7%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDL----------------YLSSEQMKTCIHGDQVLAQP 128 V+G + + G+GFL +E + +++ + + G V+ Sbjct: 5 VRGRISVNPRGFGFLNIEASPEKAGGPGRPGWAALGSATAFIAPPDLNPFLDG-DVVDAV 63 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 + GR A + ++ S++ G + A + D + D P Sbjct: 64 VVEAEPGRFSASQLALVQRDRSELFGTVVSHAKRPHLRVDRLVSNTDWPFKPGSADDLPE 123 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 G VV + + V G + ++ L + + ++ V + Sbjct: 124 GAAVVATIEGAAVVPARVV---------ASGADLGIERCLARNGVRAVFSGEVLEASRAA 174 Query: 249 KEEVPE--EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK-RGGGWRLWVAIADVSYY 305 V E GR DLRD+ VTID D DDAV G R+ V+IADV + Sbjct: 175 VAAVSVERELARGRRDLRDVITVTIDAPVTTDIDDAVSVLPAGPDGALRVLVSIADVDAF 234 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V +PLD EAR RGTSVY +VIPMLP+ +S+ SL P VDRL + E+ + +G + Sbjct: 235 VPEGSPLDLEARARGTSVYLAGRVIPMLPDAISSEAASLLPGVDRLAVTVELRIDPEGGI 294 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQD--LREQYAPLVKHLEELHNLYKVLDKAREE 423 T +E+V+ SHARL+Y V L + + E P+V L L R Sbjct: 295 TSIDLHESVIRSHARLSYDAVEEFLTTGRSAGIPEAARPVV---RWLRTAAARLSTVRAA 351 Query: 424 RGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RGG+ + EEA +AE R + AH+LIE M+ AN + A ++ P + Sbjct: 352 RGGVELDREEAYVTLDAETREPTAVSPRSDTGAHRLIERLMVAANEAVASWLVARGLPCV 411 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 FR+HD+P+ E + + G+E G + P A A ++T++ ++ Sbjct: 412 FRVHDEPTEERVRALEQFAHNFGVEAGFGARLSPLGLAAFEAQYRGSELAPAIRTVVGKA 471 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 + A Y HFGL Y HFTSPIRRY DL +HR +K L + + Sbjct: 472 LGPARYTGAGGLHFGLGAPLYLHFTSPIRRYADLAVHRVVKRYLQGRRDQRVEA------ 525 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 E + L H + R A +A + L +VG +G I S+ FG V+ Sbjct: 526 ----EALASLAHHLNARARSAAKAETERHRMLVARLFASRVGEEIEGYIVSIKPFGLVVQ 581 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + + G + + +L YR D Q L+G S + Y +G+ + + A N + ++D Sbjct: 582 MVESGATGTIALEALPGGPYRIDAAAQALVGAS--RRYGVGEPIRAAIAATNEELGRVDL 639 Query: 723 SLISSERAP 731 + AP Sbjct: 640 VPAGARGAP 648 >UniRef50_B9KCI4 Ribonuclease R n=9 Tax=Epsilonproteobacteria RepID=B9KCI4_CAMLR Length = 646 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 168/657 (25%), Positives = 294/657 (44%), Gaps = 63/657 (9%) Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLR--VEGRKDDLYLSSEQMKTCIHGDQVL 125 ++ + Y L + G + +G GFL K DL + ++ +K + D V+ Sbjct: 33 IIKFYKNKYYLKDGFTF--GKIDISANGTGFLESFDPAFKRDLLIENKNLKGANYADIVV 90 Query: 126 AQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG 185 A+ L +K R A+++ +L + V + L+ + + Sbjct: 91 AKLLPL-KKKRPSAKVILILKRAHETSLVITKKYGEAVLGVNIQTGLTCALKASQKSLKT 149 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQV 245 +G + +++ I EV+G + I+L + I+ E + Sbjct: 150 LPLGTI--LKIENHDNN-------ITEVIGHIDDDFVDEKISLALYNKNSIFDTLCENEA 200 Query: 246 AGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYY 305 ++V R DLR+L TID DA+DFDDA++ +K ++VAIADVS Y Sbjct: 201 KAYGDKVDVSMYPSRKDLRNLNFCTIDPIDAKDFDDAIFYDKNEH---VIYVAIADVSAY 257 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V + +D+EAR+RG S+YFP IPMLP LS +CSL P DRL ++++ + Sbjct: 258 VHAYSAIDKEARSRGFSIYFPHIAIPMLPRALSENICSLKPNEDRLAFCFKISLDQNNEV 317 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERG 425 + +EA+++S R Y +V LQ +DL + L E+ + + L K R + Sbjct: 318 IKEELFEAIINSKRRFNYDEVDEYLQTQEDLGA-----INWLYEVFKITQNLRKKRLKN- 371 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRI 485 F+++E + + ++ + +H LIE+CM+LAN +AA+ + + +FR Sbjct: 372 ACEFKTQELRMTLDENNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI----DIGVFRN 427 Query: 486 HDKPSTEAITSFRSVLAELGLELPGGNKPEP--RDYAELLESVADRPDAEMLQTMLLRSM 543 H P + I + L+ L +++ N +D L + R + + +++++ Sbjct: 428 HLSPDYKKIDQLLADLSTLSIDINPKNNVIELFKDIQVLANELNIREE---VDKLIIKAQ 484 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 K+A Y EN GHFGL Y HFTSPIRRY DL LHR +K + ++ ++ Sbjct: 485 KKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINHDE---------KMFN 535 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 Y + + + S+ ER AD+ + + D + + +G FK ++ V+L Sbjct: 536 YLLLNIQSTCEELSLLEREADKVSWNFMDRKFARWAKENIGKRFKAIVIE-NQSSLQVKL 594 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 DD L++ ++G + L + VEV + V++ KI Sbjct: 595 DDDIKGALIN-----------------IIGSRAN----LLENVEVEITEVDIVSAKI 630 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RN... 937 0.0 UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepI... 851 0.0 UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID... 840 0.0 UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR... 840 0.0 UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID... 834 0.0 UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR 827 0.0 UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU 815 0.0 UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID... 809 0.0 UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 781 0.0 UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K40... 778 0.0 UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolit... 778 0.0 UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_... 776 0.0 UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1... 775 0.0 UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5... 772 0.0 UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans... 772 0.0 UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentan... 770 0.0 UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=... 769 0.0 UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR4... 767 0.0 UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingell... 762 0.0 UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis A... 761 0.0 UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH 761 0.0 UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B... 761 0.0 UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V... 761 0.0 UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_N... 757 0.0 UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS... 757 0.0 UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_A... 756 0.0 UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_A... 754 0.0 UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID... 752 0.0 UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteri... 747 0.0 UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_... 746 0.0 UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia A... 742 0.0 UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13... 742 0.0 UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX... 738 0.0 UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica AT... 736 0.0 UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 R... 735 0.0 UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis ... 732 0.0 UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbi... 732 0.0 UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z97... 729 0.0 UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6... 728 0.0 UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms Re... 726 0.0 UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wol... 724 0.0 UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostri... 724 0.0 UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ... 723 0.0 UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms Re... 722 0.0 UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni Re... 717 0.0 UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KP... 715 0.0 UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M94... 714 0.0 UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM... 713 0.0 UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyr... 713 0.0 UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR... 712 0.0 UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU 710 0.0 UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID... 709 0.0 UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacteri... 707 0.0 UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdema... 707 0.0 UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM ... 705 0.0 UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria ... 705 0.0 UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 704 0.0 UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_... 703 0.0 UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN 700 0.0 UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6... 700 0.0 UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BN... 697 0.0 UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deino... 697 0.0 UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=... 696 0.0 UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9... 694 0.0 UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group ... 692 0.0 UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DS... 691 0.0 UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ... 689 0.0 UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q... 689 0.0 UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candida... 687 0.0 UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID... 687 0.0 UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yello... 686 0.0 UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE 685 0.0 UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RH... 684 0.0 UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bactero... 682 0.0 UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus E... 680 0.0 UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_... 680 0.0 UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP 678 0.0 UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kue... 678 0.0 UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 ... 676 0.0 UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=... 675 0.0 UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM... 674 0.0 UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 ... 673 0.0 UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter ver... 672 0.0 UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum... 670 0.0 UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazo... 668 0.0 UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacte... 668 0.0 UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_... 667 0.0 UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 666 0.0 UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidan... 665 0.0 UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0... 662 0.0 UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfurica... 660 0.0 UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37... 660 0.0 UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9... 660 0.0 UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimo... 659 0.0 UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens ... 659 0.0 UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13... 659 0.0 UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=... 658 0.0 UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 658 0.0 UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerof... 658 0.0 UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID... 656 0.0 UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=... 654 0.0 UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ell... 654 0.0 UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC ... 654 0.0 UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QP... 650 0.0 UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DS... 650 0.0 UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7... 649 0.0 UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiropla... 646 0.0 UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovoru... 646 0.0 UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus... 639 0.0 UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n... 638 0.0 UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=... 633 e-179 UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus ... 632 e-179 UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 154... 630 e-179 UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 606... 629 e-178 UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaeroc... 629 e-178 UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea p... 628 e-178 UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J... 626 e-178 UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellular... 623 e-177 UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopath... 623 e-176 UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacte... 623 e-176 UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacter... 617 e-175 UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiacea... 617 e-175 UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatu... 615 e-174 UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1... 613 e-174 UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=... 611 e-173 UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostri... 610 e-173 UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 87... 610 e-172 UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H... 606 e-171 UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfo... 603 e-171 UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q2... 603 e-170 UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferroox... 598 e-169 UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases ... 592 e-167 UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma... 591 e-167 UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n... 591 e-167 UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE... 588 e-166 UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacte... 588 e-166 UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma syn... 587 e-166 UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA 585 e-165 UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostri... 585 e-165 UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8... 582 e-164 UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ... 581 e-164 UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n... 581 e-164 UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_... 581 e-164 UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloac... 579 e-163 UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metaz... 579 e-163 UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica Re... 578 e-163 UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n... 576 e-162 UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n... 576 e-162 UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_... 576 e-162 UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ri... 576 e-162 UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes sc... 576 e-162 UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0L... 574 e-162 UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotr... 574 e-162 UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensi... 573 e-161 UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n... 571 e-161 UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID... 570 e-161 UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobi... 569 e-160 UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepI... 569 e-160 UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organ... 567 e-160 UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 498... 567 e-160 UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoo... 566 e-159 UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collins... 565 e-159 UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota R... 565 e-159 UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax... 565 e-159 UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuc... 563 e-159 UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, s... 562 e-158 UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured mar... 562 e-158 UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam ... 560 e-158 UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyo... 558 e-157 UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilag... 557 e-157 UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 555 e-156 UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n... 553 e-156 UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 ... 551 e-155 UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 T... 549 e-154 UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_S... 549 e-154 UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB... 548 e-154 UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribo... 546 e-153 UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_... 545 e-153 UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 70012... 542 e-152 UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azoba... 536 e-150 UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyos... 534 e-150 UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosacch... 533 e-149 UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma ... 533 e-149 UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 ... 532 e-149 UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID... 532 e-149 UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic contro... 532 e-149 UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomati... 531 e-149 UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n... 530 e-149 UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma con... 527 e-148 UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomyc... 527 e-148 UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina R... 527 e-148 UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN 526 e-147 UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babes... 525 e-147 UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila... 525 e-147 UniRef50_Q46363 Acetazolamide conferring resistance protein zam ... 524 e-147 UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegle... 522 e-146 UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR... 521 e-146 UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomy... 518 e-145 UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agarica... 517 e-145 UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera ara... 516 e-144 UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia R... 516 e-144 UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=... 515 e-144 UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis R... 512 e-143 UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 ... 511 e-143 UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n... 511 e-143 UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCT... 509 e-142 UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY... 508 e-142 UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole geno... 507 e-142 UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostell... 507 e-142 UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 ... 505 e-141 UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, pu... 503 e-140 UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n... 502 e-140 UniRef50_A4S559 Predicted protein n=3 Tax=Mamiellales RepID=A4S5... 502 e-140 UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic contro... 501 e-140 UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariop... 501 e-140 UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 ... 501 e-140 UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 Re... 500 e-139 UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella ... 500 e-139 UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 ... 500 e-139 UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosac... 499 e-139 UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic contro... 498 e-139 UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clu... 498 e-139 UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID... 494 e-138 UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccha... 493 e-138 UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosacch... 492 e-137 UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Z... 491 e-137 UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial ... 489 e-136 UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus ... 489 e-136 UniRef50_UPI0001983978 PREDICTED: hypothetical protein isoform 1... 489 e-136 UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_L... 488 e-136 UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 486 e-135 UniRef50_D2V5N5 Predicted protein (Fragment) n=1 Tax=Naegleria g... 486 e-135 UniRef50_Q6Z6A3 Os02g0754100 protein n=8 Tax=Magnoliophyta RepID... 483 e-135 UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepI... 481 e-134 UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Cae... 481 e-134 UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuc... 480 e-134 UniRef50_Q4T2G1 Chromosome undetermined SCAF10273, whole genome ... 480 e-134 UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobac... 480 e-133 UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteoba... 479 e-133 UniRef50_B9PKJ2 Mitotic control protein dis3, putative n=1 Tax=T... 479 e-133 UniRef50_UPI0000D56C52 PREDICTED: similar to exosome complex exo... 478 e-133 UniRef50_Q55FB1 Putative uncharacterized protein n=1 Tax=Dictyos... 478 e-133 UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Ta... 477 e-133 UniRef50_A7S7H2 Predicted protein n=3 Tax=Eumetazoa RepID=A7S7H2... 477 e-133 UniRef50_Q8H885 Os03g0129200 protein n=3 Tax=Magnoliophyta RepID... 476 e-132 UniRef50_A9T4Z1 Predicted protein n=2 Tax=Eukaryota RepID=A9T4Z1... 475 e-132 UniRef50_UPI0000DB782F PREDICTED: similar to CG16940-PA, isoform... 475 e-132 UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria R... 473 e-131 UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9... 472 e-131 UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ... 472 e-131 Sequences not found previously or not previously below threshold: >UniRef50_P30851 Ribonuclease R n=202 Tax=Proteobacteria RepID=RNR_SHIFL Length = 813 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 811/813 (99%), Positives = 811/813 (99%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR Sbjct: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH Sbjct: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVRP TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA Sbjct: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL Sbjct: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF Sbjct: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI Sbjct: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR QVGKKVNFEPDSAFRGEKKTKPKAA Sbjct: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPDSAFRGEKKTKPKAA 780 Query: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE Sbjct: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 >UniRef50_Q9KNY1 Ribonuclease R n=36 Tax=Gammaproteobacteria RepID=RNR_VIBCH Length = 821 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 509/816 (62%), Positives = 624/816 (76%), Gaps = 7/816 (0%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 DPF +REA+ Y NPIPSRE+ILE LT+ P +R++L L +EGEEQ EGLRRRLRA Sbjct: 6 HLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRA 65 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTC 118 MERDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG ++ D+ L QM+T Sbjct: 66 MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 IHGD VL QP G D++GR+E R+VR+L + QIVGR+F E G +VVPDDSR+ DILI Sbjct: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 P D GARMG VVV+E+T R TR +GK+VEVLG+NM GM IA+RTH+IP+ WP Sbjct: 186 PNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP 245 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 VEQQVAGL EEVPEEAK GRVDLR LPLVTIDGEDARDFDDAVYCE K+GGGWRLWVA Sbjct: 246 AEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVA 305 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVSYYVRP T LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEMT Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 VS G+L+GYK YEAVM+SHARLTYTKV IL+GD++LRE+Y LV HLEELH +Y+VL Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 AR+ERG I FE+ E KFIFNA+R+IE IE RNDAHKLIEECMILANI++A VEKAK Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAK 485 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 E AL+R+H+ P E +T FR L ELGL+L GG +P P DYA L++ + +RPD E++QTM Sbjct: 486 EAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTM 545 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT-T 597 LLRSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AK++G + T Sbjct: 546 LLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWT 605 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 TGGYHYS ++M G+ CSM ERRAD+ATR+V+DWLKC++M D VG +GV+++VT F Sbjct: 606 PTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSF 665 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 GFFVRL +L IDGLVH+S+L NDYY +D +GQRL+GES G YRLGD V+V+V AVN+D+ Sbjct: 666 GFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDD 725 Query: 718 RKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKP 777 R+IDF L+ + R R GKTA+++A + A +G ++ S + E K + Sbjct: 726 RQIDFELVETSRKLRGQGKTAKKRADEARAKAQG---KKEAATKGACGKSPTKSELKPQV 782 Query: 778 KAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 +A ++ + + KT+ R KV + Sbjct: 783 EATRRPDSEGRSKPKKTKAPKKRKDQARKKSGKVRD 818 >UniRef50_A4VQN3 Ribonuclease R n=2 Tax=Gammaproteobacteria RepID=A4VQN3_PSEU5 Length = 833 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 422/827 (51%), Positives = 557/827 (67%), Gaps = 28/827 (3%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DP REAEKY NPIPSRE IL+HL +R PA+R+EL E +E +E +E LRRRLRA Sbjct: 6 SLDPEAAREAEKYENPIPSRELILQHLGERGSPAAREELVEEFGLESDEDIEALRRRLRA 65 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 MERDGQL++TRR YA ++LDLV G V GHRDG+GFL + DDL+LS QM+ G Sbjct: 66 MERDGQLIYTRRGTYAPVDKLDLVCGRVSGHRDGFGFLIPDDGSDDLFLSPAQMRLVFDG 125 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+ LA+ G DR+GRRE IV V+ IVGRY E+ VGFVVPD+ ++ ++L+ P Sbjct: 126 DRCLARVAGLDRRGRREGAIVEVISRAHESIVGRYHIESDVGFVVPDNPKIQQEVLVTPG 185 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + + A+ G V V++T PT+R + G IVEV+G+ M GM +D+ALR+ +IP++WP+AV Sbjct: 186 RALDAKPGQFVEVKITHWPTQRFQPQGDIVEVIGNYMAPGMEIDVALRSFDIPHVWPEAV 245 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG-----GGWRLW 296 ++ A LK EV E+ K RVDLR LP VTIDGEDARDFDDAVYCEK G GG+RL+ Sbjct: 246 LKEAARLKPEVEEKDKHKRVDLRHLPFVTIDGEDARDFDDAVYCEKPGGWKLLTGGFRLY 305 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADVS+YV+ + LD+EA RG SVYFP +V+PMLPE LSNGLCSLNP VDRL MVCE Sbjct: 306 VAIADVSHYVKVDSALDKEAVVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCE 365 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-----EQYAPLVKHLEELH 411 +T+S G++T Y+FYEAV+ SHARLTY KV +L+ + +YA ++ HL++L+ Sbjct: 366 ITLSKSGKMTDYQFYEAVIHSHARLTYNKVSAMLEQPKSAEGKRLSAEYAEVLPHLKQLY 425 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 +LYKVL KAR RG I FE++E + +F A+R+I I+ T+RNDAHKLIEECM+ AN++ A Sbjct: 426 SLYKVLLKARHTRGAIDFETQETRIVFGADRKIAAIKPTERNDAHKLIEECMLCANVATA 485 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL-PGGNKPEPRDYAELLESVADRP 530 F++K + PAL+R+HD P E R+ L ELGL L G P P+DY LLE + RP Sbjct: 486 AFLQKHEIPALYRVHDAPPLERQEKLRAFLGELGLSLHKGKEGPTPKDYQALLEKIQGRP 545 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 D ++QT++LRS+ QA+Y EN GHFGL ++YAHFTSPIRRYPDL +HRAI+ ++ + Sbjct: 546 DFHVIQTVMLRSLSQAVYSAENHGHFGLNYEAYAHFTSPIRRYPDLLVHRAIRSVIRSRR 605 Query: 591 GHQ-------GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 + + Y Y + QLG+ CSM ERRADEATRDV +WLKC+FM D+V Sbjct: 606 DTPHVRREGAPSMPKARIYPYDEAALEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRV 665 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G F GVI++VTGFG FV L D++++GLVHV+++ DYY FD + RL GE SG+++RLG Sbjct: 666 GETFPGVITAVTGFGLFVELTDIYVEGLVHVTAMPGDYYHFDPLHHRLSGERSGRSFRLG 725 Query: 704 DRVEVRVEAVNMDERKIDFSLI---SSERAPRNVGKTARE------KAKKGDAGKKGGKR 754 D VEVRV V++DERKIDF LI S R+ G+ RE + + + Sbjct: 726 DSVEVRVMRVDLDERKIDFELIAGGSKTAGQRDSGERGREPGNADIRKSRELKQALMAEA 785 Query: 755 RQVGKKVNFEPDSAFRGEKKT-KPKAAKKDARKAKKPSAKTQKIAAA 800 + G+K + + KPK+A K A K+ S +K A Sbjct: 786 KSGGRKGKADKAGGSKSRSGASKPKSAGKPAEKSPASSGGPRKRKAK 832 >UniRef50_P44907 Ribonuclease R n=68 Tax=Proteobacteria RepID=RNR_HAEIN Length = 782 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 501/775 (64%), Positives = 602/775 (77%), Gaps = 1/775 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 ++QDP +RE EKY NPIPSREFIL + P +RDE+ L I E+Q+E +RRRLR Sbjct: 9 INQDPHYKRELEKYGNPIPSREFILTVIRDNNAPMNRDEILTALSIRNEDQIEAMRRRLR 68 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AME DGQLVFT+R+ YALPE+LDL KGTVIGHR+G+GFL+V+G+KDDL++ + QM+ +H Sbjct: 69 AMENDGQLVFTKRKRYALPEKLDLFKGTVIGHREGFGFLQVDGKKDDLFIPNHQMQRVMH 128 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD VLAQP G DR+GRRE RIVRVL + QIVGR+F E G G+VVPDDSR+ DIL+P Sbjct: 129 GDFVLAQPAGLDRRGRREVRIVRVLESRKKQIVGRFFLENGFGYVVPDDSRIGRDILVPN 188 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + GARMG VVVVEL +R + +G I E+LGDNM GM V+IALR H+I + +P A Sbjct: 189 EHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVEIALRNHDILHKFPSA 248 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 VE+ V EEV EEAK GRVDLR+LPLVTIDGEDARDFDDAVYCEK G W+LWVAIA Sbjct: 249 VEKYVKKFTEEVSEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKHGKG-WKLWVAIA 307 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVSYYVR + LD EA NRG SVYFP++V+PMLPE+LSNGLCSLNPQVDRLCMVCEM +S Sbjct: 308 DVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQIS 367 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +KG+LT Y+FYEAVM+SHARLTYTKV +L+GD++LR +Y+ LV HLEEL+ LY+ L A Sbjct: 368 AKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALLSA 427 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +RG I FE+ E KFIFNA RIERIE RNDA K+IEECM LANI+AA F+EK KEP Sbjct: 428 RHQRGAIDFETIETKFIFNAMGRIERIEPVVRNDAXKIIEECMXLANIAAANFMEKHKEP 487 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+RIH PS E +TSFR+ L+E GL L GG KP +DYA LLE V +RPD E++QTMLL Sbjct: 488 ALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPDHELIQTMLL 547 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y +N GHFGLAL+ YAHFTSPIRRYPDLTLHR IKYLLAKEQG + TT+TG Sbjct: 548 RSLSQAVYHADNIGHFGLALEEYAHFTSPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTG 607 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 GYHYS +EM LG HCSM ERRAD+ATR+VADWLKC++M D VG F GVISSVTGFG F Sbjct: 608 GYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVGGEFSGVISSVTGFGLF 667 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDDLFIDGLVH+S+L+NDYY+FD QRL+GE+SG YRLGD+V ++VEAV+++ + + Sbjct: 668 VRLDDLFIDGLVHISTLENDYYQFDAAKQRLIGENSGMQYRLGDKVRIKVEAVHLENKMV 727 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKT 775 DFSLI SER PR GKTA+EKAKK ++ V + S K+ Sbjct: 728 DFSLIGSERKPRRAGKTAKEKAKKVFKELPSKASKKRKSAVKKKDVSKKTSRKRK 782 >UniRef50_P40611 Ribonuclease R n=83 Tax=cellular organisms RepID=RNR_VIBPA Length = 835 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 501/800 (62%), Positives = 614/800 (76%), Gaps = 4/800 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DPF +RE++ Y NPIPSREFILE L + P +R++L L + GEEQ EGLRRRLR Sbjct: 5 IPNDPFADRESQNYENPIPSREFILEFLEQAGVPMNRNDLFEALKLAGEEQYEGLRRRLR 64 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKT 117 AMERDGQLVFTRRQCYALPE+L++VKG VIGH+DG+G++R EG + DD+ L QMK Sbjct: 65 AMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDDDILLPHHQMKN 124 Query: 118 CIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDIL 177 IHGD VL QP ++GRRE R+VRVL + SQIVGR+F E G +VVPDDSR+S DIL Sbjct: 125 IIHGDFVLVQPTDNSKRGRREGRLVRVLEERNSQIVGRFFLEYGYSYVVPDDSRISQDIL 184 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 IP + GARMG VVV+E+T R +R +GK+VEVLG+NM GM IA+RTH+IPY W Sbjct: 185 IPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQIPYEW 244 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 P+AVE+Q+ L EEVPEEAK GRVDLR+LPLVTIDGEDARDFDDAV+CEKK+ GGWRLWV Sbjct: 245 PEAVEKQIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKDGGWRLWV 304 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVSYYVRP + LD+EA NRG SVYFPSQV+PMLPEVLSNGLCSLNPQVDRLCMVCEM Sbjct: 305 AIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEM 364 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 T+S G+L+ YK YEAVM+SHARLTY+KV IL+GD++LRE+Y PLV HLEELH +YKVL Sbjct: 365 TISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 +AR++RG I FE+ E KFIFNAER+IE IE RNDAHK+IEECMILANI++A VEKA Sbjct: 425 KEARDQRGAIEFETVETKFIFNAERKIESIEPVIRNDAHKIIEECMILANIASASLVEKA 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 KEPAL+RIH+ P + FR L+ELGLEL GG +P P DYA+L +A R D E++QT Sbjct: 485 KEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQDQELIQT 544 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT- 596 MLLRSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AKE+G + Sbjct: 545 MLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRNQDRW 604 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 T TGGYHYS ++M G+ CSM ERRAD+ATR+VADWLKC++M D VG+ +GVI++VT Sbjct: 605 TPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTS 664 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 FGFFVRL DL IDGLVH+S+L NDYY+FD +GQRL+GES G YRLGD V+V+V AVN+D Sbjct: 665 FGFFVRLTDLHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLAVNLD 724 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK 776 +++IDF L+ + R R GKTA+++A + K KR + + Sbjct: 725 DKQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATRSSSKESATARAVPAIEPT 784 Query: 777 PKAAKKDARKAKKPSAKTQK 796 + + D+ + +K + Sbjct: 785 KRPEQTDSGRKRKGPKRGDD 804 >UniRef50_Q31FJ1 RNAse R n=2 Tax=Proteobacteria RepID=Q31FJ1_THICR Length = 818 Score = 827 bits (2137), Expect = 0.0, Method: Composition-based stats. Identities = 358/789 (45%), Positives = 522/789 (66%), Gaps = 10/789 (1%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP +REA+KY NPIPSREFI+E L K +KP ++A L I+ +E+ E L RRL+ Sbjct: 39 MIADPHADREADKYENPIPSREFIIELLEKEQKPLRIKQIATILDIDDDERFEALSRRLK 98 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AM RDGQ++ RR + L +++DL+KG VIGH G+GF++ E DL+L +M H Sbjct: 99 AMVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQPEEGGGDLFLGDREMHKVFH 158 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD+V+A +G DRKGRRE IV ++ I+GR E G+G+V P+++R++ DI IP Sbjct: 159 GDKVIASVIGVDRKGRREGMIVEIIEHANQTILGRLHMEDGLGWVQPNNNRIAQDIFIPQ 218 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D ++ A G +V+VE+ +PT+R+ A+GKI+EV+GD + GM +D A+ ++IP WPQ Sbjct: 219 DGLLDAEEGQIVMVEVIHQPTKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQE 278 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q+ + +EV +E K GR DLR LPLVTIDG D++DFDDAV+ ++++ G WRL VAIA Sbjct: 279 LLDQLEAIPDEVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNG-WRLVVAIA 337 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ TPLD+EA RG SVYFP +V+PMLPE LSN LCSLNP VDRLCMVC+M++ Sbjct: 338 DVSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRLCMVCDMSID 397 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDK 419 + G+L +FY+AVM+S ARLTY +V +L + R+ + +V ++E+L++LY++L Sbjct: 398 NDGKLERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTFKDVVPNVEDLNDLYEILKG 457 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 AR ERG + F++ E + +F+ R+IE+I RN+AHKLIEECM++AN++ AR+++ K Sbjct: 458 ARSERGALEFDTTETRIVFDEHRKIEKIVPVVRNEAHKLIEECMLMANVATARYLKWHKI 517 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 P L+R+H+KPS E + + R+ L + GL L GG++P+ DYA + E+V +P ++ T+L Sbjct: 518 PMLYRVHEKPSEERLKNLRTFLGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVL 577 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRSM QA+Y P+N GHFGL + YAHFTSPIRRYPDL +HRAI++ K+ + Sbjct: 578 LRSMNQAVYQPDNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQ--------DV 629 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + YS ++M LG+HCS ERRADEATRD +LKC+F+ ++G + V+++ T FG Sbjct: 630 SKFKYSEKDMKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEEYDAVVTAATNFGL 689 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV L+ L+++GLVH++ L DY+ +D L GE +G+ YRLGD++ V+V VN+D+RK Sbjct: 690 FVELEPLYVEGLVHITELGEDYFHYDASRHCLKGERTGKVYRLGDKLRVQVAQVNLDDRK 749 Query: 720 IDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKA 779 ID +S + KA K + + KK + Sbjct: 750 IDLRFLSGGGDSSDEQAPIETKAADTSDSKPAEEAPSQEDGDAPKKKKKRYYRKKGGGRN 809 Query: 780 AKKDARKAK 788 KK + A+ Sbjct: 810 RKKKSSAAE 818 >UniRef50_O32231 Ribonuclease R n=76 Tax=Bacillales RepID=RNR_BACSU Length = 779 Score = 815 bits (2105), Expect = 0.0, Method: Composition-based stats. Identities = 283/756 (37%), Positives = 441/756 (58%), Gaps = 13/756 (1%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 E +L + + KP + EL L+I E+ + L + L A+E G +V TR Y +P Sbjct: 7 MEKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRSDRYGIP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 E+++L+KG + H G+ FL E D+++ ++ T ++GD V+ + R+E Sbjct: 67 EKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQSSGSRQE 126 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++R+L ++VG Y GFV+PDD +++ DI IP + GA G VVV+LT Sbjct: 127 GTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKVVVKLTS 186 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P R A G++ +LG G+ + + H +P +P +Q + + + E+ Sbjct: 187 YPEGRMNAEGEVETILGHKNDPGIDILSVIHKHGLPGEFPADAMEQASSTPDTIDEKDLK 246 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLRD +VTIDG DA+D DDAV K G ++L V IADVS+YV ++P+D+EA Sbjct: 247 DRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPIDKEALE 306 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVY +VIPM+P LSNG+CSLNP+VDRL + CEMT++S+G++T ++ +++V+ + Sbjct: 307 RGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQSVIKTT 366 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R+TY+ V IL D++L+++Y PLV +++ L ++L R +RG + F+ +EAK + Sbjct: 367 ERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFKEAKVL 426 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + E ++ + +R+ A KLIEE M++AN + A P ++RIH++P+ E + F Sbjct: 427 VDDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNAEKLQKF 486 Query: 498 RSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G + G PR +L++V DRP+ ++ T++LRSMKQA YDP++ GHF Sbjct: 487 LEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDPQSLGHF 546 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GL+ + Y HFTSPIRRYPDL +HR I+ L + + + E + + +H Sbjct: 547 GLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEK------WAERLPDIAEHT 600 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ERRA +A R+ D K ++MLD++G F G+ISSVT FG FV L + I+GLVHVS Sbjct: 601 SSMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNT-IEGLVHVSF 659 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 + +DYYRFD+ ++GE +G +R+GD + V+V VN DER IDF ++ + PR + Sbjct: 660 MTDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGTPRRPRE 719 Query: 737 TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGE 772 +++K GK KR Q S +GE Sbjct: 720 LDSSRSRKR--GKPARKRVQSTNTPVSPAPSEEKGE 753 >UniRef50_Q0K976 Exoribonuclease R n=19 Tax=Burkholderiales RepID=Q0K976_RALEH Length = 909 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 374/845 (44%), Positives = 512/845 (60%), Gaps = 43/845 (5%) Query: 7 QEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDG 66 +++ + PIPSRE IL L P S ++A L + +E +G ++RL AMERDG Sbjct: 39 FQKKLNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALSVTRKE-HDGFQKRLAAMERDG 97 Query: 67 QLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 Q+ R+ Y L + + V G V GHRDG+GFL + +DD++L +++ +H D+ Sbjct: 98 QIELNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQV 157 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA 186 + +G DR+GR E +IV ++ ++GR +E GV V P+D R+S DILIPP A Sbjct: 158 RVVGYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQGKA 217 Query: 187 RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 R+G VV VEL + P R + VG++VEVLG+ GM ++IA+R + +P+ + A Q+ + Sbjct: 218 RVGQVVSVELIEFPDRYVQPVGRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSPAAAQEAS 277 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG---WRLWVAIADVS 303 L +EV + R+DLRD+PLVTIDGEDARDFDDAVYCE + G WRL VAIADVS Sbjct: 278 ALPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIADVS 337 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YVRP TPLD +A +R TSVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+ +++KG Sbjct: 338 HYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLCMVCDAVITAKG 397 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKARE 422 L GY+FY AVM S ARLTY +VW +L + + LV HL+ L+ L++VL KAR Sbjct: 398 ELKGYQFYPAVMHSTARLTYNEVWSVLSNTKGPEAHKRGELVPHLQNLYELFQVLLKARR 457 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F++ E + NA+ +IE+I RNDAH+LIEECM+ AN+ AA F+E+ K PAL Sbjct: 458 ARGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPAL 517 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIH PS E + + R L GL L GG+KP+ DYAE+++ + RPDA MLQTMLLRS Sbjct: 518 YRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRS 577 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ------------ 590 M+QA+Y P+N GHFGL+ ++YAHFTSPIRRYPDL +HRAIK +LA + Sbjct: 578 MQQAVYSPDNIGHFGLSYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGTELN 637 Query: 591 --------------GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC 636 Q + +LG HCS ERRADEA+RDV WLKC Sbjct: 638 TAISPKARRLQAKDAEQKAELTAARARRNEAIWDELGLHCSANERRADEASRDVEAWLKC 697 Query: 637 DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESS 696 FM D++G+ + G +S+VT FG FV+LD+L+++GLVHV+ L +DY+++D+ L GE + Sbjct: 698 YFMRDKLGSDYAGTVSAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERT 757 Query: 697 GQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 G YRL DRV V+V V++D RKIDF L+ A + + + R+ Sbjct: 758 GIRYRLTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGGTETQPRVPAAHAVPARK 817 Query: 757 VGKKVNFEPDSAFRGEKKTKP------------KAAKKDARKAKKPSAKTQKIAAATKAK 804 G+++ + + E+ +A R K K K AA K Sbjct: 818 KGRQLAALLGGSSKPEESFDETLDRVIEEQPVFEAVITPLRPHVKTGGKPAKRAAKPKPA 877 Query: 805 RAAKK 809 K Sbjct: 878 HLEKP 882 >UniRef50_B5EJB3 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=B5EJB3_ACIF5 Length = 746 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 347/728 (47%), Positives = 481/728 (66%), Gaps = 10/728 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +RE EKY PI SRE+IL +L +P++ +++ +L + E+Q E LRRRLRAM Sbjct: 13 RDPMFDREKEKYERPIVSREYILSYLESAGQPSTLEDIIADLEVSEEDQ-EALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + E ++LV+GTV H DG+GFL EG DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVEAMELVRGTVSAHPDGFGFLIPEGGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +L + +G DR+GR E IVR+L Q+VGRY+ E GV +VVP+D R+ + + Sbjct: 132 TILGRAVGEDRRGRIEGAIVRILERALKQVVGRYYAEGGVRYVVPEDRRIPQEFAVVEGG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G +V +E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP V Sbjct: 192 ELAPVHGQIVTLEITQYPDGRNMPQGCVVEILGEHMAPGMEVEIAVRNYGLPHQWPDEVL 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ E VPE K GR DLR LPLVTIDG DA+DFDDAVY E+ G +RL VAIADV Sbjct: 252 AEITHFSETVPEAIKEGRRDLRALPLVTIDGADAKDFDDAVYAEEIENG-FRLIVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 + YVRP + LD+EA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM+CEM Sbjct: 311 ATYVRPDSALDKEAATRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMLCEMETDLT 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + ++F VM S R TY +V IL GD+DLR + A +V HLE LH LY+ KARE Sbjct: 371 GEVQRFRFARGVMRSQRRFTYDEVAAILAGDEDLRTRDAAMVPHLEVLHRLYESFAKARE 430 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F+S+E++ I+N + RIE+I RN AH++IEECM+ AN+ AA++ + P L Sbjct: 431 RRGTIEFDSQESRIIYNEQARIEKIVAVTRNVAHRIIEECMLAANVCAAQYFRIHELPML 490 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R+H +PS + + R L ELG+ + P D A ++E +R D+ ++QT++LRS Sbjct: 491 YRVHPEPSGDKLEDLRRFLGELGVPVRLPTHPRSADLASIIEDTRERSDSSLIQTVILRS 550 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 + QA Y + HFGLA +Y HFTSPIRRYPDL +HR I+ LL Sbjct: 551 LSQAYYTVDTGMHFGLAFLAYTHFTSPIRRYPDLVVHRGIQALLDAAGAEPRW------- 603 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + + + +LGQHCSM ERRADEA+R+ +WLKC+FM+D+VG + G+I+ VTGFG FV Sbjct: 604 -FPQKVLQELGQHCSMTERRADEASREAVNWLKCEFMMDKVGETYTGIITGVTGFGLFVA 662 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L +++++GL+H+S+L DY+ FD R++G+ + +T++LGD +++RV VN+D+RKIDF Sbjct: 663 LREIYVEGLIHISTLGEDYFHFDAQHYRIIGDRTKETFQLGDEIQIRVANVNLDDRKIDF 722 Query: 723 SLISSERA 730 + E Sbjct: 723 ERVMPEGQ 730 >UniRef50_A1K401 Exoribonuclease II n=16 Tax=Bacteria RepID=A1K401_AZOSB Length = 993 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 361/785 (45%), Positives = 499/785 (63%), Gaps = 21/785 (2%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 +Y P+PSRE+I + L ++ P S LA L I+ E LE RRLRAMERDGQL+ R Sbjct: 2 QYDYPLPSREYIEQTLAEQGVPMSFAALAGALDIQPHE-LEHFERRLRAMERDGQLMRNR 60 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 R + LP++ DL++G V GH DG+GFL + + D++L ++M+ +HGD+ + + G D Sbjct: 61 RDAFLLPDKADLIRGRVEGHPDGFGFLVRDDGQPDIFLGPKEMREVLHGDRAIVRIAGQD 120 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 R+GR E ++V +L S++VGR E GV VVP++ RL+ DIL+ P + G VV Sbjct: 121 RRGRPEGKVVEILERANSRVVGRVLNEHGVMIVVPENRRLAQDILVAPGG-KKVQPGQVV 179 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 VEL ++PT+ + +G++ EVLG+ GM ++IALR H++P+ + + L V Sbjct: 180 TVELIEQPTKYAQPIGRVTEVLGNYADPGMEIEIALRKHDLPFEFSSEAKADTRKLPTAV 239 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 ++ AGR D+ LPLVTIDGE A+DFDDAVYCE++ G +RL VAIADVS+YV + L Sbjct: 240 RKKDWAGREDITALPLVTIDGETAKDFDDAVYCERQGRG-FRLVVAIADVSHYVEAGSAL 298 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 DR+A RG SVYFP +VIPMLPE LSNGLCSLNPQV+RLCMV +M +S G + Y+FY Sbjct: 299 DRDAYERGNSVYFPRRVIPMLPEKLSNGLCSLNPQVERLCMVADMGISMTGEIKAYRFYP 358 Query: 373 AVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 AVM SHARLTYTKV L + ++ L+ HLE L L++VL KAR +RG I FE+ Sbjct: 359 AVMFSHARLTYTKVAAALYDNDATALDEIGGLLPHLENLDKLFRVLLKARAKRGAIDFET 418 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 E + IF+ +IERI RNDAH+LIEECM+ AN+ A+ F+ K PAL+R+H+ P+ Sbjct: 419 TETRMIFDDNGKIERIVPETRNDAHRLIEECMLAANVCASDFLHKNDHPALYRVHEGPTP 478 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 E + R+ L+E GL L GG++P +DYA LL+ V DRPDA++LQT++LRS++QA+Y P+ Sbjct: 479 EKLEKLRTFLSEFGLPLGGGDEPRAKDYAALLDKVKDRPDAQLLQTVMLRSLRQAVYSPD 538 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +LA E HY+ + Sbjct: 539 NVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLAGE-------------HYAAGDWDD 585 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 +G HCS ERRADEATRDV WLKC +M D+VG F+G +S+V FG FV LD +FI+GL Sbjct: 586 IGLHCSTTERRADEATRDVVAWLKCYYMQDKVGEEFEGSVSAVVPFGLFVALDGIFIEGL 645 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE--- 728 +HVS L DY+ +D+ ++GE +G+ +RL DRV V++ V+M+ KIDF L+ Sbjct: 646 LHVSELGADYFHYDEARHAMLGERTGKQFRLSDRVRVQLVRVDMETNKIDFRLVEGPLLA 705 Query: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFE-PDSAFRGEKKTKPKAAKKDARKA 787 + R A E + G+K + R + + + K Sbjct: 706 KPARKAAAPATEALVEVPQDAVVPVAPAGGRKRKPAVEKAPQRATETVESPPPQTAPAKT 765 Query: 788 KKPSA 792 K+ Sbjct: 766 KRARK 770 >UniRef50_D0KXP1 Ribonuclease R n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXP1_HALNC Length = 803 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 385/750 (51%), Positives = 516/750 (68%), Gaps = 11/750 (1%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQL-EGLRRRLRAM 62 DP +EAEKY NP+ SREFIL+ L++++ P + + L L +G+++ EGL RR+RAM Sbjct: 8 DPQAAQEAEKYDNPVASREFILQLLSEQDGPLTLNRLISHLEYDGDDERIEGLSRRMRAM 67 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQ++ RR Y +LV+G V+GHRDG+GFL + DD++LS M+ ++GD Sbjct: 68 ERDGQVIRNRRGGYVPVTHAELVRGRVLGHRDGFGFLVPDDGGDDVFLSPRVMRALLNGD 127 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + + Q G DR+GRRE +V V+ ++IVGR EAG+ FVVPD +R++ DIL+P Sbjct: 128 RAVVQVTGLDRRGRREGNLVEVIERANAEIVGRLVLEAGIAFVVPDHARITQDILVPMTD 187 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 +MGAR G +V V L ++PT R K VGK+VEVLGD+M GM +D+A+ +H IP+ WP+ V Sbjct: 188 LMGARDGQIVRVALVEQPTLRHKPVGKVVEVLGDHMSPGMEIDVAINSHGIPHEWPEEVL 247 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + GL EV E K+GRVDLR +PLVTIDG D++DFDDAV+C+ G +RL VAIADV Sbjct: 248 AAIDGLNPEVEESHKSGRVDLRSMPLVTIDGADSKDFDDAVFCQAAPEG-FRLLVAIADV 306 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV + LDRE NR TSVYFP +V+PMLPEVLSNGLCSLNP VDRLC+ +M ++++ Sbjct: 307 SHYVNVGSALDREGFNRATSVYFPGRVLPMLPEVLSNGLCSLNPAVDRLCLCADMLINNE 366 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G + ++F+E VM S ARLTY V +L D + R +A L++ LE LH +YKVL AR Sbjct: 367 GHIAKFRFFEGVMKSAARLTYDTVAKVLVDQDAEARAAHAHLLEPLETLHGVYKVLRSAR 426 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 E RG I F++ E K +F R+IE I +RNDAHK+IEECMI AN++A RFV K PA Sbjct: 427 ERRGAIDFDTVETKIVFGEGRKIEAIVPYERNDAHKIIEECMIAANVAAGRFVADHKIPA 486 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+HD+P+ E IT R++LAE GL L GG++P P+D+ LL V R D +QTM+LR Sbjct: 487 LYRVHDRPTAEKITDLRAMLAEKGLSLGGGDQPSPKDFNALLSQVQGRADFLTIQTMILR 546 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 S+KQA+Y P+N GHFGLA + YAHFTSPIRRYPDL +HRAI++LL + Sbjct: 547 SLKQAVYSPDNLGHFGLAHEFYAHFTSPIRRYPDLMVHRAIRHLLRTGAPDR-------- 598 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + Y+ +EM+ +G+HCS ERRADEATRD DWLKC+FMLD+VG VF+G ++SV GFG FV Sbjct: 599 FPYNHDEMVIIGEHCSNNERRADEATRDATDWLKCEFMLDKVGEVFEGRVASVLGFGLFV 658 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L D F++GL+H+++L DYY FD V L GE SG+ Y L D + VRV V++DERKID Sbjct: 659 ELKDFFVEGLLHITALTKDYYHFDPVTLSLRGERSGRVYALNDAITVRVARVDLDERKID 718 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKG 751 F L + A AR + + + Sbjct: 719 FVLPDDDEALSESSGDARSEPRDDQESDED 748 >UniRef50_B8I4T4 Ribonuclease R n=2 Tax=Clostridium RepID=B8I4T4_CLOCE Length = 788 Score = 776 bits (2005), Expect = 0.0, Method: Composition-based stats. Identities = 271/792 (34%), Positives = 437/792 (55%), Gaps = 15/792 (1%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I+ + + KP EL + L + EE +E + + +E +G++ T + Y +P Sbjct: 8 KERIVAFMRDKAYKPLLFKELRMVLDVP-EEDIELFTQVMDELEEEGRVFKTHGKRYGVP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 RL+LV G + GH GYGFL + +D+++ ++ + +H D+V+A+ R+ Sbjct: 67 SRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKSSSDRKM 126 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E I+R+L + +VG + GFVVPD+ R+S DI + + GA+ G VVVE+ Sbjct: 127 EGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFVSKSEFHGAKKGQKVVVEIL 186 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + P R A G+++E++GD TG+ + ++++ + +P+ V Q + + V EE Sbjct: 187 KYPEARRNAEGRVIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSIGDTVTEEMI 246 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLR L +VTIDGEDA+D DDAV E G +RL V IADV+ YV ++PLD EA Sbjct: 247 QGRRDLRGLRMVTIDGEDAKDLDDAVSIETLENGNYRLGVHIADVTNYVTENSPLDLEAL 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 +RGTSVY +VIPMLP LSNG+CSLNP VDRL + + G+ ++ +E+V++ Sbjct: 307 DRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFSVMIDIDKNGKAYNHEIFESVINI 366 Query: 378 HARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V+ IL + DQ+L ++Y+ +V +++ L +L K R +RG I F+ +EA+ Sbjct: 367 DERMTYTNVYKILEENDQELIKRYSHVVSDFQKMKELALILRKKRFQRGAIDFDFDEARV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + + +++ + A+++IEE M+ N + A P ++RIH+ P E I + Sbjct: 427 VIDEKGKPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRIHEDPDEEKIHN 486 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 L LG + G NK PR +LLE V ++ T +LRS+++A Y E+ GHF Sbjct: 487 LNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTAMLRSLQKARYSNESTGHF 546 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRYPDL +HR +K L ++ + ++ + C Sbjct: 547 GLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGG-------MSEEKINHLEGILPEIAKQC 599 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER ADEA R+ D K ++M G +F+G+I++VT FG F+ LD+ I+GLV +SS Sbjct: 600 SERERAADEAERESEDLKKVEYMKAHEGEIFEGIIANVTSFGMFIELDNT-IEGLVRMSS 658 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 +++DYY +++ L+GE + + YR+GD V+V + ++ RKI+F L+ S+ Sbjct: 659 MEDDYYNYNESHYCLVGERTRKIYRIGDSVKVILAKADVAARKIEFILVESDDEDDFDNI 718 Query: 737 TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQK 796 + + K R+ KK + + +K + A+ + K K K Sbjct: 719 DQETEDELIFTKNKS--RKSSIKKNSQSTKAVKADDKGGRNSASDNKSGKKGKIIDKKVY 776 Query: 797 IAAATKAKRAAK 808 K KR + Sbjct: 777 EKIMGKRKRKKR 788 >UniRef50_A1V4B6 Ribonuclease R n=78 Tax=Burkholderiales RepID=A1V4B6_BURMS Length = 896 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 353/776 (45%), Positives = 486/776 (62%), Gaps = 27/776 (3%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 ++ KY PIPSRE IL L + P + +++A L I+ +E+ EG RR+ AMERDGQ Sbjct: 82 DKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQER-EGFFRRVAAMERDGQ 140 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 + +R Y L + V G V GHRDGYGF+ + +DDL+L + +M+ +H D+VLA+ Sbjct: 141 IRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLAR 200 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 +G DR+GR E +V V +++GR E G V P+D R+S DIL+ A+ Sbjct: 201 IVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILV-TQNAKKAK 259 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 +G VVVVELT P+R ++ +G++ EVLGD GM ++IA+R + +P+ + + A Sbjct: 260 VGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAA 319 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG---WRLWVAIADVSY 304 L ++V RVDLRD+PLVTIDGEDARDFDDAVYCE G +RL VAIADVS+ Sbjct: 320 LPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSH 379 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV+P +PLD +A R TSVYFP +VIPMLPE LSNGLCSLNPQVDR + C+M ++++G Sbjct: 380 YVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGD 439 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE-QYAPLVKHLEELHNLYKVLDKAREE 423 + Y+FY AV+ S ARLTYT+V +L + + A L+ HL+ L+ +YK L AR++ Sbjct: 440 IKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQHLYGVYKALFVARQK 499 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I F++ E + NA+ +IE+I QRNDAH+LIEECM+ AN+ AA F+++ K P L+ Sbjct: 500 RGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLY 559 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R+H P+ E + + R+ L ++GL L GG+ P DYA L+ + DRPDA+MLQ MLLRSM Sbjct: 560 RVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSM 619 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN-------- 595 +QA+Y P+N GHFGLA +YAHFTSPIRRYPDL HRAI +L+ ++ + Sbjct: 620 QQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNT 679 Query: 596 -------------TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 G + +LG HCS ERRADEA+RDV WLKC FM D+ Sbjct: 680 ALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDK 739 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 +G + G+++ VT FG FV+LD LFI+GLVHV+ L DY+++D+V L GE +G YRL Sbjct: 740 LGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYRL 799 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVG 758 DRV V+V V++D RKIDF L+ +A + G Sbjct: 800 SDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEAGAGGPRVRALPPAEG 855 >UniRef50_C6CSX5 Ribonuclease R n=149 Tax=Firmicutes RepID=C6CSX5_PAESJ Length = 941 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 287/809 (35%), Positives = 436/809 (53%), Gaps = 32/809 (3%) Query: 18 IPSREFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 + + +L+ + + KP + EL I + + + L +E +G+++ TR + Y Sbjct: 1 MMQEQGLLDFMRETAYKPMTYQELEQHFGINDAAEFKEFLKLLNQLEEEGKVIRTRNERY 60 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 +PER++L++G + H G+ FL + + D+Y+ + K+ ++GD L + G Sbjct: 61 GVPERMNLLRGKIQAHAKGFAFLLPDEKDHPDVYIHANDQKSAMNGDIALVRITSQSEGG 120 Query: 136 -RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 R E +VR++ +Q+VG + + GFVVPDD R++ DI IP + GA G VVV Sbjct: 121 GRMEGEVVRIVQRAVTQVVGTFESHEAFGFVVPDDKRINRDIFIPKGEFQGAVTGQKVVV 180 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 ++T P R+ A G+I+E+LG G+ + +R H++P + V + + + E Sbjct: 181 KITSYPEGRSAAQGEIIEILGHKNDPGIDILSIIRKHQLPEGFSDEVMAEAEAAPDSITE 240 Query: 255 EA--KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 E + GR DLR +VTIDGEDA+D DDAV+ ++ G + L V IADV YYV+ + L Sbjct: 241 EEIVEQGRRDLRGEVIVTIDGEDAKDLDDAVHVKRLENGNYLLGVHIADVGYYVKERSAL 300 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D+EA RG SVY +VIPMLP LSNG+CSLNPQVDRL + CEM SK + + + Sbjct: 301 DQEAFRRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDSKLKRVRHDIFT 360 Query: 373 AVMSSHARLTYTKVWHILQG-----DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 +V+ + R+TYT V IL + +L+E+YA L+ + L L K R +RG I Sbjct: 361 SVIKTKERMTYTNVRKILMATEEEPETELKERYADLLDMFTLMEELAMKLRKKRMKRGAI 420 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 F+ +E+K I + E + I + +R+ A ++IEE M+ AN + A + P L+RIH+ Sbjct: 421 DFDFQESKVIVDKEGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPFLYRIHE 480 Query: 488 KPSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQA 546 P E + F + G + G GN PR LLE + + ++ T++LRSMKQA Sbjct: 481 DPDQEKLLHFMQFASNFGYVVKGKGNSVHPRALQTLLEEIHGTKEETVISTVMLRSMKQA 540 Query: 547 IYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 YD E+ GHFGLA + Y+HFTSPIRRYPDL +HR I+ +L E Sbjct: 541 KYDAESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVLENGGALPEIRNEA-----LA 595 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDL 666 M + QH S ER A +A RD KC+FMLD+VG F G+ISSVT FG FV LD+ Sbjct: 596 ARMPDIAQHSSERERVAVDAERDTDKLKKCEFMLDKVGEEFDGIISSVTSFGMFVELDNT 655 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++GL+ +S L +DYY F ++ L+GE + + YR+GD V++RV VNMD+ IDF ++ Sbjct: 656 -VEGLIRLSGLTDDYYHFHELHMVLIGERTSKVYRIGDEVKIRVAQVNMDDYTIDFEMVD 714 Query: 727 SERAPRNVGKT-------------AREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK 773 + G ++ GD G G+ G++ RGE+ Sbjct: 715 MKPRSDFRGVADAGFGARNGGGRKRGGFSRGGDTGAVVGRGGDKGRRGKESRAGDGRGER 774 Query: 774 --KTKPKAAKKDARKAKKPSAKTQKIAAA 800 + K + A++A+ A+ Sbjct: 775 NDRGPSKGGRDGAKRAEHSGAQGNAKRKR 803 >UniRef50_C5RP83 Ribonuclease R n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP83_CLOCL Length = 785 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 277/783 (35%), Positives = 443/783 (56%), Gaps = 38/783 (4%) Query: 20 SREFILEHL-TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 + +L + + KP ELA I ++ ++ L ME++G ++ TR + Y + Sbjct: 3 IKGTLLSFMNEQAYKPMDIKELARIFDIRKKDMH-MFQQVLDDMEKEGTIIKTRTENYGV 61 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 P R++L+ G + GH G+GF+ + D+++ S QM IHGD+V+A+ ++ G++ Sbjct: 62 PARMNLIIGKLQGHSKGFGFVIPDEEGVKDVFIPSSQMGGAIHGDRVVAKITFGEKNGKK 121 Query: 138 -EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E I+R+L T +++G Y GFV+P+D R+SFDI +P + GA+ G VV+ E+ Sbjct: 122 CEGEIIRILERNTKEVIGTYEDSRNFGFVIPEDKRISFDIFVPKNFRSGAKTGQVVICEI 181 Query: 197 TQRPTRRT-KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + P GKI +LG+ G+ + ++ H +P +P V + EE+P++ Sbjct: 182 LEYPDDSRRNPEGKIKNILGNKGDKGIDILTIIKKHGLPEEFPAKVLDAAESIDEEIPDK 241 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 A R DLRD+ +VTIDGEDA+D DDAV K G + L V IADV++YV+ S+ LD E Sbjct: 242 EIARRRDLRDMMMVTIDGEDAKDLDDAVSLSKLDNGNYYLGVHIADVTHYVKESSKLDNE 301 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTS Y +VIPMLP LSNG+CSLNP+VDRL + C M ++ KG++ ++ E+++ Sbjct: 302 AFLRGTSTYLIDRVIPMLPRKLSNGVCSLNPKVDRLTLTCFMEINDKGKVENHEIVESII 361 Query: 376 SSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 ++AR+TYT V IL+ DQ+L E+Y LV + + L +L+ R++RG + F+ +E Sbjct: 362 KTNARMTYTNVTKILRDKDQELIEEYKELVPMFQAMEELQHILEAKRKKRGAVDFDFQEC 421 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K I N + I+ +R A+K+IEE M+ N + A + +K P ++RIH++P+ E + Sbjct: 422 KIILNEMGKPVDIKPYERAIANKIIEEFMLACNETIAEHMFWSKMPFVYRIHEEPNEEKL 481 Query: 495 TSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 F LG + + P+ E++E V + + ++ T+LLRSM QA Y PE+ G Sbjct: 482 EHFNEFARNLGYVVKKTKEVHPKHLQEIVEQVKGKKEETVINTLLLRSMMQARYSPESLG 541 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLA + Y HFTSPIRRYPDL +HR IK + + + T + + Sbjct: 542 HFGLAAKYYCHFTSPIRRYPDLQIHRIIKSFINGKIDEKYMKKLTVT-------VEKASL 594 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S ER A +A R+V D K ++M D++G V++G+ISSVT FG FV L++ ++GL+H+ Sbjct: 595 QSSERERAAQDAEREVDDLKKAEYMSDRIGEVYEGIISSVTNFGMFVELENT-VEGLIHI 653 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 S+L++DYY +D+ L+GE + YRLGD +++ V+ V++ +I F + + + Sbjct: 654 STLNDDYYVYDEDRLWLLGERTKNIYRLGDSIKIIVDKVDLAAHEIYFEVFKEDNIEDKI 713 Query: 735 GKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKT 794 + E+ K F+G+KK P+A KK K + S + Sbjct: 714 EEYKDEEEK------------------------FFKGDKKDLPEAVKKQLLKDLETSLED 749 Query: 795 QKI 797 Q+ Sbjct: 750 QQQ 752 >UniRef50_D2RJU5 Ribonuclease R n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJU5_ACIFE Length = 823 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 283/791 (35%), Positives = 433/791 (54%), Gaps = 19/791 (2%) Query: 23 FILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 IL ++ + P S DEL L +EG + L+ ++ +E GQ++ TR Y LP Sbjct: 9 KILGYMKEHPTAPLSADELLQALTLEGAD-LKLFWTVMKELEDRGQVIKTRFNIYGLPAA 67 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDD--LYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + LV G G+ F+ E + +D L++ + + + GD V+A+ + + R+E Sbjct: 68 MGLVVGRCQVTSKGFAFVIPEEKTEDGDLFIPASSLSGAMDGDTVIARVMQSGYDDRQEG 127 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +I+R+L ++VG + GFV+PD+ R+ DI + GAR VVVE+T Sbjct: 128 KIIRILNRAHHKLVGTFSKSGEFGFVIPDNKRVGRDIYVRRKDFNGARDKEKVVVEITTW 187 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P R A GKIVE+LG G+ + ++ +++P +P V+ +++++ ++ Sbjct: 188 PDERRNAEGKIVEILGKPGDIGLEILSIIKDNDLPTKFPAPVQVAAEKVEQKIKKKEIQN 247 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+D RD ++TIDG D++D DDAVY EK+ + L V IADVSYYV+P + LD+EA R Sbjct: 248 RLDRRDWNIITIDGVDSKDLDDAVYVEKQGD-NYFLGVYIADVSYYVQPHSVLDQEAYER 306 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMSSH 378 GTSVY +V+PMLP LSNG+CSLN DRL M CEM + GR + V+++H Sbjct: 307 GTSVYLVDRVLPMLPVELSNGICSLNEGEDRLTMACEMLLDGKTGRTLSFTIAPCVINNH 366 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R+ Y V IL D+ LRE+YA +V LE++ L +VL K RE RG I+FE E K + Sbjct: 367 HRMNYPDVRAILVDQDEALREKYADIVPMLEDMARLQQVLHKKRERRGAINFELPEQKVL 426 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + ++ I + +R+ A LIEE M+ AN + A F+ + K P ++R+HD P E I + Sbjct: 427 LDDQKHPVAIVKRERSVAEMLIEEFMLAANETVAGFMARHKRPFIYRVHDLPDPEKIQNL 486 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 ++A G+ L K P+D L+ VA +P+ +++ T+ LRSM+QA+Y EN GHFG Sbjct: 487 AKLMALFGVTLKVEEKMRPKDLQRALDKVAGKPEEKLVSTVALRSMRQAVYQTENIGHFG 546 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y HFTSPIRRYPDL +HR ++ L E+ + E + + HCS Sbjct: 547 LAAHFYTHFTSPIRRYPDLMVHRLLRRQLDGERLSRQQAEERTQ------RLSLVASHCS 600 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 + ER A +A R D ++M+ VG F G IS V+ FGFFV LD+ ++GLVHVSSL Sbjct: 601 VRERAAIDAERQTVDLKMAEYMVQFVGKEFTGTISGVSSFGFFVELDN-GVEGLVHVSSL 659 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS-----SERAPR 732 ++DYY + + L+G+ G YRLGD+V+++V V++ ERKIDF L +++ R Sbjct: 660 NDDYYDYIEGQYALIGQHLGHRYRLGDQVDIQVLQVDVAERKIDFVLAGLAPEAADQMRR 719 Query: 733 NVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSA 792 +G+ + K + + + RG ++ K K Sbjct: 720 ELGRQKKTKTGIATGKLRNDTTGRKSGERKESGKKNSRGGRRKKKKNGSPRQNGTGLSQL 779 Query: 793 KTQKIAAATKA 803 Q+ A ++ Sbjct: 780 VPQETTPAGES 790 >UniRef50_A1AN74 Ribonuclease R n=9 Tax=Desulfuromonadales RepID=A1AN74_PELPD Length = 777 Score = 769 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 300/778 (38%), Positives = 424/778 (54%), Gaps = 13/778 (1%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 S++ IL L +++ + + G L+R L M +DG+LV R YAL Sbjct: 4 SKKNILAFLKQQDGAIHFAGILRQFG--GRHVKNELKRMLDDMAQDGELVRFRGNSYALA 61 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRRE 138 ++G + HRDGYGF+ +G +D+++ M+ +HGD V + G+ E Sbjct: 62 SAATSIRGKLSSHRDGYGFVTPQGGGEDIFIPQRHMRGAMHGDTVEVHAERSRMGGGKFE 121 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 RI V+ S++VGRY V+P+++RL+ I IPP A+ G VVVEL+ Sbjct: 122 GRITSVVERGVSRVVGRYEETRRGAIVIPEETRLNLVIAIPPKGRGLAQDGQQVVVELSS 181 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P A G +VEVLG + V A+R ++P+++ + + E VP + A Sbjct: 182 YPVGGRPAEGNVVEVLGWPDDPEVEVQSAIRRFDLPHVFAPDTLAEAEAIPETVPAQELA 241 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 GRVDLR L VTIDGE ARDFDDAV + G +RLWV+IADVS+YVRP +PLDR+A Sbjct: 242 GRVDLRPLATVTIDGETARDFDDAVSLRR-EGDNFRLWVSIADVSHYVRPDSPLDRDAYL 300 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RGTSVYFP + IPMLPE LSNG+CSLNP V+RL M EM G + FY +++S Sbjct: 301 RGTSVYFPDRCIPMLPERLSNGICSLNPGVERLTMTAEMLFDRDGSMLESSFYPGIIASA 360 Query: 379 ARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 ARLTYT+V ++ D++ + + L E+ L +L R +RG I F+ E++ I Sbjct: 361 ARLTYTQVKRVIVDQDRETADSLGTVTPMLLEMKELALILMGMRRKRGSIDFDLPESEVI 420 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 E I + +R AH+LIEE M+ AN + A F+ + P L+RIH+ P + +F Sbjct: 421 IGLTGLTEGIVRAERTLAHQLIEEFMLAANEAVALFIAEKGIPLLYRIHENPDPAKLINF 480 Query: 498 RSVLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G E P + P D LLES A RP+ M+ LLR MKQA Y EN HF Sbjct: 481 QEFAFGFGYEFPLKEERVNPADLQRLLESAAGRPEERMINYALLRCMKQARYAAENLHHF 540 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRYPDL +HR +K LLA + G+ + + ++G+H Sbjct: 541 GLASRCYCHFTSPIRRYPDLVVHRILKALLALAENR-GSKQAEKRLSLATHNLSEVGEHT 599 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A EA RD+ + K FM +G F G I+ VTGFGFFV L++LF++GLVHVS+ Sbjct: 600 SKRERVAMEAERDIVELKKAQFMQQHLGEEFDGFITGVTGFGFFVELEELFVEGLVHVST 659 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN--- 733 LD+D Y F + L+G + G+ R+GDR VRV +V+ R+I+F L+ + Sbjct: 660 LDDDLYTFVENRHSLVGRNRGRVLRIGDRARVRVASVSPATRRIEFVLVGHASSTPQMPL 719 Query: 734 --VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFR-GEKKTKPKAAKKDARKAK 788 G + G R + + P + R G+K+TK A + RK + Sbjct: 720 TTAGDGEFPRTPIRGKRLPGQGRERNAEGTKPSPAAGRREGQKRTKKGAVRTGGRKRR 777 >UniRef50_A6LR40 Ribonuclease R n=9 Tax=Clostridiales RepID=A6LR40_CLOB8 Length = 755 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 271/752 (36%), Positives = 417/752 (55%), Gaps = 24/752 (3%) Query: 13 KYANPIPSREF--ILEHLTK-----REKPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 KY+N I E I + L +P +EL I+ E ++ LR ME + Sbjct: 10 KYSNSIMEEEIMGIKQTLASFMKEPAYRPMDIEELIAVFDIKKNE-YNAFKKTLRTMENE 68 Query: 66 GQLVFTRRQCYALP----ERLDLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIH 120 G ++ T++ Y + E L+ G++ H G+GFL E + D+++ S + ++ Sbjct: 69 GLIIRTKKDKYMIANANHEEEGLIIGSLQSHSKGFGFLIPEEEGQKDVFIPSNCINGAMN 128 Query: 121 GDQVLAQPLGAD-RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD++ + D + +RE +V ++ T++IVG Y GFVV +D R+S D+ I Sbjct: 129 GDKISVRVTREDTKTKKREGEVVEIIERNTTRIVGVYEDSKNFGFVVSEDPRISKDVFIS 188 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 GA G VV V++T+ P KA G + EVLG G+ + + ++ +P + + Sbjct: 189 KKDRNGANDGDVVTVKITKWPEENRKAEGVVTEVLGRKGDRGIDILMIIKKLGLPEEFSE 248 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 V++ G+ +E+ EE GR DLRDL +VTIDGEDA+D DDAV EK G ++L V I Sbjct: 249 KVQKYAEGISDEIDEEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHI 308 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADV++YV+ ++PLD+EA R TSVY +V+PMLP LSNG+CSLNP+VDRL + C M + Sbjct: 309 ADVTHYVKENSPLDKEALKRATSVYLIDRVVPMLPRKLSNGICSLNPRVDRLTLTCFMEI 368 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLD 418 KG++ ++ E+V+ ++ R+TY V IL+ D++L ++Y LV + + L +L Sbjct: 369 DHKGKVVDHEIVESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILR 428 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 R +RG I FE EAK N + I+ R ++++IEE M+ AN + A + Sbjct: 429 NKRTKRGAIDFEIAEAKITLNELGKPIEIKPYDREISNRMIEEFMLAANETVAEHMFGTH 488 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 P ++RIH+ P E + F+ + LG + + P+ + E+LE V + + ++ T+ Sbjct: 489 LPFVYRIHESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTL 548 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 LLRSM QA Y PE GHFGLA + Y HFTSPIRRYPDL +HR IK L E Sbjct: 549 LLRSMMQARYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIHRIIKEYLHGEVDGTRINKL 608 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 Y + S ER+A +A R+V D K ++M +++G F+G+ISSVT FG Sbjct: 609 KNIVGY-------AAKQSSEMERKAQDAEREVDDLKKAEYMQERIGQEFEGIISSVTSFG 661 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FV L + I+GLVH++ LD+DYY F++ L+GE + + Y+LGD+V+V V++ R Sbjct: 662 IFVELPNT-IEGLVHITDLDDDYYIFNEANLSLIGERTKKLYKLGDKVKVECVNVDITNR 720 Query: 719 KIDFSLISSERAPRNVGKTAREKAKKGDAGKK 750 +I F + + K + K + KK Sbjct: 721 EIFFKITQEPKR-EETDKDFESEGKISEVEKK 751 >UniRef50_C4GFK4 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFK4_9NEIS Length = 964 Score = 762 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 359/812 (44%), Positives = 490/812 (60%), Gaps = 32/812 (3%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +QDP+ RE +KY +P+PSRE+I++ L P LA +L I E E RRL+A Sbjct: 24 AQDPYLAREQQKYPHPLPSREWIIQLLETTGVPQKIPSLAKQLSIADSE-YEFFERRLKA 82 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV--EGRKDDLYLSSEQMKTCI 119 M RDGQ++ RR E+L++VK V H+DG+GF + DL L Q + + Sbjct: 83 MARDGQILINRRNLVCAAEKLEIVKCRVEMHKDGFGFAVPLIPTGEGDLVLYERQTRGVM 142 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 +GD V +PLG DR+GRRE +I+ ++ + IVGR++ E G+ + P+D RL+ ++++ Sbjct: 143 NGDIVTVRPLGLDRRGRREGQILDIIERAQTSIVGRFYLERGIAVLDPEDKRLTQNVILE 202 Query: 180 PDQIMGAR--MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 PD + G VVV E+T P AV +I EVLGD +GM ++IALR H++P+ + Sbjct: 203 PDSVAQFAPGEGQVVVAEITAYPENHRPAVARITEVLGDYADSGMEIEIALRKHKLPHEF 262 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + A + E+V + RVDLRDLPLVTIDGE +RDFDDAV+ EK G +RL V Sbjct: 263 SAGCLKAAAKIPEKVRASDRKNRVDLRDLPLVTIDGETSRDFDDAVFAEKI-GRNYRLVV 321 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADVS+YV+P +D++A+ R TSVYFP +VIPMLPE LSNG+CSLNP V+RLCMVC++ Sbjct: 322 AIADVSHYVKPDDAIDQDAQERATSVYFPRRVIPMLPENLSNGICSLNPDVERLCMVCDI 381 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 ++ G + Y+FY AVM SH RLTY +VW + P + L L+ L+K+L Sbjct: 382 EITFAGNIKSYRFYPAVMKSHGRLTYNQVWEWISQKTQN-----PYSEQLNTLYKLFKIL 436 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 K R RG + FE+ E + +FN +I+RI RNDAHKLIEECM+ AN+ AA F+ K Sbjct: 437 QKKRHARGAMEFETSETQMLFNDNGKIDRIIPVVRNDAHKLIEECMLAANVCAADFLLKN 496 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 K PAL+R H P+ E + + R L LGL+L GG+ P P+DYA L + +A+R D E+LQT Sbjct: 497 KHPALYRNHAGPTPEKLAALREQLGLLGLKLGGGDNPTPKDYAALADQIAERDDRELLQT 556 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 MLLRSM+QA Y+P N GHFGLA + Y HFTSPIRRYPDL +HRAIK +LA Q Sbjct: 557 MLLRSMQQAQYEPHNAGHFGLAYEHYTHFTSPIRRYPDLLVHRAIKAVLAGTQ------- 609 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + LG H S ERRAD+A+RDV +WLK +M D+VG VF G IS + F Sbjct: 610 -------YQADWQALGAHSSHCERRADDASRDVENWLKTYYMRDKVGEVFAGKISGMANF 662 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 G FV LDD+ I+G+VHVS L DY+ + ++GE SG +++GDRV ++V ++D Sbjct: 663 GIFVTLDDIHIEGMVHVSDLGEDYFNYHPETLSMIGERSGVQFKMGDRVVIKVARADLDT 722 Query: 718 RKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKP 777 KID L+S + KAKK A G ++ GKK + G K Sbjct: 723 SKIDLVLVSGGE------SRSSRKAKKQAANDSGSLKKARGKKAAETAAAPIEGSAGKKS 776 Query: 778 KAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809 + A K + K S K A +AK + Sbjct: 777 RKA-KGSLKTSNASFSEAKTEGANEAKTSEAG 807 >UniRef50_C8N9X2 Ribonuclease R n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9X2_9GAMM Length = 831 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 347/732 (47%), Positives = 482/732 (65%), Gaps = 13/732 (1%) Query: 2 SQDPFQEREAEKY-ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DPF RE +KY NP+PSREFIL L + K + ++A ++ E E L+ RL+ Sbjct: 14 TLDPFFAREQQKYGDNPLPSREFILNWLEAQGKLLTFAQIARAFDMDAAES-EKLQIRLK 72 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AM GQL+ R+ + + ++DL+ G V+ H++GYGF E + D ++ + M +H Sbjct: 73 AMLGAGQLMCNRQGRFGVARKMDLISGFVVAHQEGYGFFSPENGEPDGFIPPKYMAELMH 132 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD++LA+ D +GR++ V +L +IVG+ + GV ++PD+ RL+ ++IP Sbjct: 133 GDKILARVKDTDERGRKDYAPVEILERAQKRIVGKLAVQQGVWSLLPDNRRLTHHLIIPA 192 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 D + G + G VV+ E+T P+R + +GK+V VLG+ M GM VDIA+ H IP ++P+A Sbjct: 193 DALGGGKAGQVVIGEITAYPSRFQQPIGKVVAVLGEAMAAGMEVDIAIENHNIPAVFPEA 252 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V +Q + + + ++ GR+DLR LP VTIDG ARDFDDAVY EK+ G +RL+VAIA Sbjct: 253 VREQCEKIPDALRDQDYEGRLDLRHLPFVTIDGISARDFDDAVYAEKR-GENYRLYVAIA 311 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV++YVRP +PLD EA NRGTSVYFP +VIPMLPE LSNGLCSLNP VDRL MVCE+T++ Sbjct: 312 DVAHYVRPDSPLDIEAYNRGTSVYFPDRVIPMLPEKLSNGLCSLNPNVDRLAMVCEITLA 371 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-LREQYAPLVKHLEELHNLYKVLDK 419 G + F++AV+ SHARLTY V IL D +RE +A L + L+ L +Y +L Sbjct: 372 PDGSIKRSAFHDAVIHSHARLTYETVEEILFLDNQMVRESFAALQRPLDNLKTVYGILRA 431 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 AR R I F + E +FI+++E +IE I+ R ++H+LIEECMI ANI AA+++ + K Sbjct: 432 ARLARSVIDFHASEPEFIYDSEGKIETIQARARLESHRLIEECMIAANICAAKYIGRHKL 491 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTM 538 PAL+R+HD PS E + L + G++ G + P ++ LL ADRPD ++ M Sbjct: 492 PALYRVHDHPSAERLGKLIDFLGKRGIKWQGALDNATPAQFSALLAQCADRPDFAQIEIM 551 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 +LRSM QAIY PENRGHFGLAL+ YAHFTSPIRRYPDL +HRAI++ L Sbjct: 552 VLRSMSQAIYIPENRGHFGLALEHYAHFTSPIRRYPDLLVHRAIRHQLQGG--------T 603 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 Y YS E M++ G+HCSM ERRADEATRD D+LKC+FM ++G F G I+++T FG Sbjct: 604 RDNYRYSAESMVEKGKHCSMTERRADEATRDAMDFLKCEFMSHRIGETFTGRIANITNFG 663 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FFV LDD++IDGLVHVS+L NDYY + L GE SG + L D VE++V V+++ER Sbjct: 664 FFVTLDDIYIDGLVHVSALTNDYYHYSAETFTLNGERSGTRFALMDAVEIQVAKVDIEER 723 Query: 719 KIDFSLISSERA 730 KIDF L++ + Sbjct: 724 KIDFELLAHKGK 735 >UniRef50_B8DDA7 Ribonuclease R n=21 Tax=Listeria RepID=B8DDA7_LISMH Length = 793 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 292/799 (36%), Positives = 448/799 (56%), Gaps = 21/799 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 E I+ LT K + ++L +E+ + + + + + L +E G +V +R+ YALP Sbjct: 7 EEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVKALVKLEDSGTIVRSRKNRYALP 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 E++DLVKGT H G+GF+ E ++ DD+++ ++K ++GD V A E Sbjct: 67 EKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNEVKDAMNGDLVFATITKRKGDNLAE 126 Query: 139 ARIVRVLVPKTSQIVGRY-FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 I +++ KT+QIVG Y AG V+PDD RL ++ I + + G V+VELT Sbjct: 127 GTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKRLFGEVEIDLEDGLKPVDGHKVIVELT 186 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + T +A G + ++G G+ + + H I +P+ V +QV+ + V + Sbjct: 187 EYATGHARARGVVKSIIGHRNDPGVDILSIIHKHGISIGFPEEVMEQVSKAPDVVDDSDI 246 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R DLRD ++TIDG DA+D DDAV + G W+L V IADV++YV +PLD EA+ Sbjct: 247 GNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVEAQ 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP LSNG+CSLNPQVDR M CEM + +G + ++ +E+++ + Sbjct: 307 ERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESIIKT 366 Query: 378 HARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V IL + D+ LRE+YAP+V LE++ +L ++L + RE+RG I F+ +EA+ Sbjct: 367 TERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEARV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + E + +R+ LIEE M+ AN + A P ++RIH+ P + + Sbjct: 427 VVDEDGHPEAVVMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLAR 486 Query: 497 FRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 F + GL + G N P ++LE V +P+ ++ T++LRSM+QA YD + GH Sbjct: 487 FFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGH 546 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGL+ Y HFTSPIRRYPDL +HR I+ L + EE+ ++ +H Sbjct: 547 FGLSTDFYTHFTSPIRRYPDLIVHRLIREYLINGDVRPETLEKR------AEELPEIAEH 600 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ERRA EA R+ + K +FM+D+VG F G+ISSVT FG F+ L I+GLVHVS Sbjct: 601 SSKMERRAVEAERETDELKKTEFMVDKVGERFIGIISSVTNFGLFIELPTT-IEGLVHVS 659 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVG 735 ++ DY++F Q ++GE +GQ YR+GD VEV V V++D R+IDF+L S + Sbjct: 660 AMKGDYFKFHQNQLAMIGERTGQIYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSD 719 Query: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR----KAKKPS 791 K R++ K D + ++ G+ +S +TKPK +KD KK Sbjct: 720 KQKRQREKPIDKTRNFKSNQKKGRNKRRTGNS-----DETKPKTERKDDEWYTKPKKKKK 774 Query: 792 AKTQKIAAATKAKRAAKKK 810 K A ++ + K++ Sbjct: 775 KKPFYQGVAKESPKKKKRR 793 >UniRef50_B2SQ32 Ribonuclease R n=23 Tax=Xanthomonadaceae RepID=B2SQ32_XANOP Length = 842 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 355/747 (47%), Positives = 473/747 (63%), Gaps = 12/747 (1%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP +REA +YA PI SRE IL+ L + P + +E+A +L++ ++++ L +RL AM Sbjct: 106 KDPHADREALRYAEPIASREAILQLLEACDGPQTAEEIAEQLNLS--DRIDALGKRLAAM 163 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 R+ QLV RR YA ++ L+ G VI + +G+GFL+ +G DDL+L +M+ +HGD Sbjct: 164 VREAQLVQNRRGGYAPVQQTSLIAGVVIANPEGFGFLKPDGGGDDLFLPPFEMRKVMHGD 223 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + LA G DR+GRRE I RVL S+++GR+F E GV +V PDD R+ ++ I PD Sbjct: 224 RALANVTGIDRRGRREGAIARVLERGMSRMLGRFFYEHGVAYVDPDDKRIQRNVQIAPDG 283 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 I AR G +VV EL P R A+GKI+ VLGD + + V++A+ HE+P+ +PQ V Sbjct: 284 IGEAREGQLVVCELIAPPDARRPAIGKIIAVLGDKLTPSLVVEMAIHGHELPHEFPQEVL 343 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + A + V + GRVDLR +PLVTIDGEDA+DFDDAVYCE G +RL VAIADV Sbjct: 344 DEAAAVPLVVEPQMIGGRVDLRQMPLVTIDGEDAKDFDDAVYCEPNADG-FRLVVAIADV 402 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S YVRP TPLD EA+ R TSVYFP V+PMLPE LSNG+CSL P+VDR+C VC+M V Sbjct: 403 SNYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLMPKVDRMCFVCDMQVGGD 462 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G +TG +FYEAVM+SHARLTY +VW + +GD D + PL+ ++ LH LY+VL KAR Sbjct: 463 GEVTGSRFYEAVMNSHARLTYNQVWKAVGEGDADTKAFIGPLLPQVQRLHQLYQVLSKAR 522 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 RG I FE+ E +F+ + + + RNDAHKLIEECMI AN+ AAR++ PA Sbjct: 523 THRGAIEFETSEVRFVLDNTGEVTQAGMLVRNDAHKLIEECMIAANVEAARYLLSMHVPA 582 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+H++P L E L LP +K P DY +LL+ V RPDA +L+++LLR Sbjct: 583 PYRVHERPPESKYEDLLEFLKEFQLSLPAWSKVRPGDYTKLLKKVRARPDAALLESVLLR 642 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 S A+Y PEN GHFGLAL++YAHFTSPIRRYPDL +HRA+K+ L + Sbjct: 643 SQSLAVYSPENNGHFGLALEAYAHFTSPIRRYPDLLVHRALKHALTGASPEK-------- 694 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + Y+ +M L CS RRADEA R+V + + +M VG F GVIS VTGFG FV Sbjct: 695 FIYTPRQMAALSLQCSERGRRADEAEREVDERYRAAWMEKHVGGQFDGVISGVTGFGLFV 754 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L ++GLVHV+ L DYY+FD + + L GE G+ +RLGD V V V +M+ERKID Sbjct: 755 ELTQSKVNGLVHVTQLPQDYYQFDPIRKTLSGERRGREFRLGDPVRVLVLKASMEERKID 814 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAG 748 F L AP K+ Sbjct: 815 FRLAEEGAAPEAPLPLRETSTKRKKKS 841 >UniRef50_C4V602 Ribonuclease R n=3 Tax=Veillonellaceae RepID=C4V602_9FIRM Length = 898 Score = 761 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 283/804 (35%), Positives = 415/804 (51%), Gaps = 25/804 (3%) Query: 21 REFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + +P EL L + E E L L A+E DG ++ R Y LP Sbjct: 10 KERIYAFMREDAYRPLPEAELRTGLGLPESEGKE-LSAALAALETDGAVIRNRSGLYGLP 68 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE----GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 R++LV G + G+GF+ + + D+++ M T +HGD+V+A+ +++ G Sbjct: 69 SRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGTAMHGDRVVARVTPSEQPG 128 Query: 136 R-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 R RE I+R+L + IVG + GFV PD +++ D+ + GA+ G VVV Sbjct: 129 RAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDVFVLKKDFGGAKTGSKVVV 188 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+T+ P +R A G++VEVLG G+ V +R +++ +P V + A ++ Sbjct: 189 EITKWPEQRRSAEGRVVEVLGKTGDPGVDVLAVMRAYDLDEKFPPDVAEAAARCPKDPLP 248 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E AGR D RD P+VTIDGED +D DD VY ++ G + L V IADVS+YVR PLDR Sbjct: 249 EEYAGRRDRRDFPIVTIDGEDTKDIDDGVYA-YEKDGVFFLGVYIADVSHYVRAGEPLDR 307 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RGTSVY +VIPMLP+ LSNG+CSLN VDRL M CEM + G + Y+ V Sbjct: 308 EAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMEIGMDGEVRNYEIVPCV 367 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + RLTYT V +L G++ + LE L L +VL R RG I FE E Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNGDIRPMLETLRRLREVLRAKRHRRGSIDFELPEV 427 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K +A+ +E+ + +IEECM+ AN + AR +E +EP ++R+H+ P+ E I Sbjct: 428 KVKLDADGHPVALEKRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHETPAAEKI 487 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 +S+LA LGL L K P D ++L+ V +P+ ++ + LRSM+QA Y + Sbjct: 488 ERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQPEERIIGAVALRSMQQARYSTAS 547 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR ++ A + + Sbjct: 548 LGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIAAEKRERLRAL------LPEA 601 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S ER A EA R+ D K ++M VG ++GVIS VT FG FV L++ ++GLV Sbjct: 602 AEHSSARERIAIEAERETTDMKKIEYMAQFVGETYEGVISGVTAFGIFVELEN-GVEGLV 660 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS----SE 728 HVS++ NDYY + + ++GE +G YRLGD V + + ++ R +DF L Sbjct: 661 HVSTMVNDYYSYIEDQYAMVGERTGTRYRLGDTVTIIITRADVQARTLDFVLKDNGVYEP 720 Query: 729 RAPRNVGKTAREKAKKGDAGK---KGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 A K + K AG +R++ ++ +A G + + K Sbjct: 721 GAAAPAKKNTSPRPVKESAGAEQQHSSRRKKNERRPGPTSTAAGAGYGERRKKTRGAHGS 780 Query: 786 KAKKPSAKT-QKIAAATKAKRAAK 808 + AAA R + Sbjct: 781 SGSRAQKGDRAAHAAAESVPRKGR 804 >UniRef50_B2A6Y6 Ribonuclease R n=3 Tax=Clostridia RepID=B2A6Y6_NATTJ Length = 709 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 262/713 (36%), Positives = 411/713 (57%), Gaps = 13/713 (1%) Query: 21 REFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R+ I+ + KP + +EL E I Q++ ++ L+ M RDGQ+V TR Y LP Sbjct: 4 RDKIINFMKADAYKPMTFEELKDEFKINKPRQVKRFKKILKKMTRDGQIVKTRYGYYGLP 63 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRR 137 ER++L GT+ GH GY FL + D++LS + + +H D+VL + + + Sbjct: 64 ERMNLQIGTIQGHPKGYAFLLPDKPGSPDVFLSPKSLNGALHNDKVLVRIHKEEMLNQKP 123 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E +VR++ S++VG + GFVVPDD R D+ I GA+ G VV ++T Sbjct: 124 EGEVVRIISRGMSEVVGTFDKSDRFGFVVPDDDRFFRDVFINKADANGAKNGQKVVAQIT 183 Query: 198 QRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 P T G+I++V+G+ G+ ++ + + + +P V++Q+ + E+ + Sbjct: 184 GWPDTPAKNPEGEIIKVIGNPSDPGVDIETIINKYGLSEDYPPKVKEQLEEVPNEISPKD 243 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 GR ++ LP VTIDG DA+D DDAV EK G L V IADVSYYVR TPLD+EA Sbjct: 244 YEGRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEA 303 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 R RGTSVY +V+PMLP LSN +CSLNP V+RL M + ++ +G + Y+ +V+ Sbjct: 304 RQRGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIANYRLTPSVIK 363 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S+ RLTY +V + G +++ E+Y + L E+ + + L + R + G I FE +E Sbjct: 364 SNYRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRERRFDEGAIDFEFDEPVV 423 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + + E +E+ R A KLIEE M+LAN A P ++R+H++P E +++ Sbjct: 424 VLDDQGKPESVEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQPDDEKVST 483 Query: 497 FRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 FR ++ G L P G + P ++ ++LE D + + TM+LRSMKQA Y E+ G Sbjct: 484 FREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQARYAAESLG 543 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGL+ Q Y HFTSPIRRYPDL +HR ++ ++ K+ + + ++ ++ Sbjct: 544 HFGLSFQYYTHFTSPIRRYPDLVVHRIMREIITKKDLKEARQKKL------QSKLEEIAY 597 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S+ E+ A EA R+ D+ ++M VG+ F G++SSVT FG F+ L +L ++GLVHV Sbjct: 598 QSSLREQEATEAERESVDYKMAEYMEQFVGDDFPGIVSSVTSFGIFIELPNL-VEGLVHV 656 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 SS+ +DYY FD+ L+GE + +TYR+GD V+V+V + ++ ++DF L+ Sbjct: 657 SSMTDDYYYFDEEKFALIGEQTRKTYRIGDEVKVKVVKTSKEDCQVDFELVED 709 >UniRef50_A5EVE2 Ribonuclease R n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVE2_DICNV Length = 752 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 338/750 (45%), Positives = 488/750 (65%), Gaps = 12/750 (1%) Query: 3 QDPFQEREAEKY-ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 +DP+ RE EKY NP+PSREFIL L ++ K + ++ ++ + + L R++A Sbjct: 12 RDPYYRREIEKYGKNPLPSREFILLWLEEQGKLLTFPQIVKAFNMSEA-RGDLLHYRIKA 70 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M GQL+ R+ + ++DLV G VI H +GYGFL VEG DD ++ + M+ +HG Sbjct: 71 MIAAGQLMRNRQGFIGVSHKMDLVSGYVIAHPEGYGFLNVEGDIDDGFIPPQYMRELMHG 130 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ D +GR++ V +L ++VG+ G+ V+P++ RL+ I+IP Sbjct: 131 DKILARIKHVDGQGRKDYVPVEILQRGQKRVVGKLLNNQGIFSVIPENRRLTQPIMIPKA 190 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + A +V+ E+T P++ +A+G IV+VLGD M G+ V IA+ + IP + AV Sbjct: 191 ALGDAVANQIVLAEITAYPSKHQQAIGTIVKVLGDEMAAGLEVAIAIENYNIPNHFSDAV 250 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q+ + + + E R+DLR LP+VTIDG ARDFDDA+Y EK+ G +RL+VAIAD Sbjct: 251 RAQIEKMPDALQEADYVDRLDLRYLPMVTIDGISARDFDDALYAEKR-GENYRLFVAIAD 309 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSYYV+P +PLD EA RGTSVYFP +V+PMLPE LSNGLCSLNP VDRLC+VCE+T++ Sbjct: 310 VSYYVKPDSPLDEEAYARGTSVYFPDRVVPMLPEKLSNGLCSLNPHVDRLCLVCELTITP 369 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVLDKA 420 G++ KF++AV+ SHARLTY V IL D ++E +A L LE+L +Y++L A Sbjct: 370 SGQIKNSKFHQAVIQSHARLTYETVEKILFLQDPLMQESFAQLRAPLEDLRVVYQILRTA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 RE+R I F+ +EA+F+F++E +IE I+ ++++LIEECM++AN++AA+F++K K Sbjct: 430 REKRQAIRFDFKEAEFLFDSEGKIESIQARNELESYQLIEECMVIANVAAAKFLQKHKLI 489 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 L+R+HDKPS E + A+LG + P + +A LL+ R D +L+ M+L Sbjct: 490 GLYRVHDKPSAERFEKVFNYFAKLGFKTPSFDTVTVEHFAHLLKKAEGRQDRALLEKMIL 549 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+ QA+Y ENRGHF LAL YAHFTSPIRRYPDL +HRAI++ L +E Sbjct: 550 RSLPQALYSSENRGHFALALSHYAHFTSPIRRYPDLLVHRAIRHCLQEESSEVS------ 603 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 YS+E+M ++ +HCSM ERRAD+A+RD D+LKC+FM ++G+ F G ISSVT FG F Sbjct: 604 --LYSLEKMDEMAKHCSMTERRADDASRDAMDFLKCEFMSHRIGDEFFGEISSVTSFGLF 661 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 + LD+ FIDGLVHVS+L +DYY +D RL+GE SG +Y+L D+V +RV VN++++KI Sbjct: 662 ITLDEFFIDGLVHVSTLPSDYYHYDADNVRLLGERSGHSYQLMDKVRIRVVQVNIEDKKI 721 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKK 750 DF L+ + N K R + K Sbjct: 722 DFELLEHQGKKLNKKKRTRTDKRGRARKGK 751 >UniRef50_C9RAV4 Ribonuclease R n=2 Tax=Clostridia RepID=C9RAV4_AMMDK Length = 715 Score = 756 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 276/719 (38%), Positives = 400/719 (55%), Gaps = 9/719 (1%) Query: 18 IPSREFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 + +++ ILE + +P + +ELA + + L +R LR ME +G + TR Y Sbjct: 1 MVTKKEILEFMKAGAYRPLTLNELARIF-LPDGKGLGAFKRLLREMEEEGLIYQTRAARY 59 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 LPE+ +LV G + H GY FL + + D+++ + +H D+V + Sbjct: 60 GLPEQFNLVVGRLECHPRGYAFLVPDREGEPDVFIPPGCLGGAMHQDRVAVRLFPGSHGR 119 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 RE +VRVL Q+VG + + FVVPDD RL+ ++IP ++ GAR G VVVE Sbjct: 120 TREGEVVRVLRRAHRQLVGTLYKKRRSVFVVPDDPRLTHQVVIPKGKLNGARNGEKVVVE 179 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 LT P T A G++VEVLG GM + + R + +P +P VE++ + + E Sbjct: 180 LTTYPGPYTPAEGRVVEVLGPEDAPGMDMLVLCRRYGLPDGFPPEVEEEAENIPLTIRPE 239 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 AGR DLR+ +VTIDGEDA+D DDAV E G +RL V IADVSYYVR + LDRE Sbjct: 240 ELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDRE 299 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTS+Y P +VIPMLP LSNG+CSLNP+ DRL + M V SKG + Y+ + +V+ Sbjct: 300 AFQRGTSIYLPDRVIPMLPPRLSNGICSLNPEEDRLTLSVLMRVDSKGEVLEYELFPSVI 359 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S ARLTY V L G + L + LE + L L + R ++G I F E K Sbjct: 360 RSKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLPETK 419 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + + E R + +R ++IEE M+LAN + AR K + P ++RIH +P E + Sbjct: 420 VVLDEEGRTVDVYPAERGIGEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQPDPEKVA 479 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 S +LA LG + EP + E+LE+VA +P+ ++ ++LRS+KQA Y E H Sbjct: 480 SLEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARYAAERSEH 539 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA + Y HFTSPIRRYPDL +HR ++ + K G + + Sbjct: 540 FGLASEYYTHFTSPIRRYPDLFIHRVLRETVLKGAGLSPRRRA-----RLEKLAQEAAAQ 594 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S ER A E R+ D K FM+D+VG + G IS VT +G +V L++ ++GLVHV Sbjct: 595 SSERERLAMEVEREAVDIKKVAFMVDKVGREYAGFISGVTNWGLYVMLENT-VEGLVHVR 653 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 L +D+Y +D+ L+G +G+ +RLGD V VRV ++ E+ ++FSL++ AP + Sbjct: 654 HLTDDFYFYDEKNYALVGRHTGKRWRLGDPVRVRVLRASVPEKLVEFSLLTEAEAPDKL 712 >UniRef50_C8WU28 Ribonuclease R n=3 Tax=Firmicutes RepID=C8WU28_ALIAD Length = 903 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 275/799 (34%), Positives = 410/799 (51%), Gaps = 15/799 (1%) Query: 19 PSREFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +E +LE++ + +P++ EL L + R L ME G LV T+ YA Sbjct: 1 MWKERLLEYMRSEEYRPSTVQELCERLGVTSAADFRAFVRLLNEMEDAGDLVRTKNNRYA 60 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKG- 135 LPE+++ + G + GYGF+ E + D+Y+ + + GD+VL + KG Sbjct: 61 LPEQMNFIAGRLQLKARGYGFVIPENEAEADIYILQTALNGAMSGDRVLVRLREERGKGA 120 Query: 136 --RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 RE IV++L +IVG+ A FV P D R D+ +P D + A G VVV Sbjct: 121 QAHREGEIVKILERGNDRIVGQIAIYAHHAFVTPLDKRFPEDVFVPKDAVGNAHDGQVVV 180 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 VELT PT VG++VEVLG G+ + +R + +P +P+ V + E+ Sbjct: 181 VELTSYPTATHGPVGRVVEVLGYPDEPGVDILAIVRKYNLPEAFPEDVLADAERIPLEID 240 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 A R D R +VTIDG+DA+D DDAV+ ++ G + L V IADV YYV+ ++PLD Sbjct: 241 PAEIARRKDFRGETIVTIDGDDAKDLDDAVHVKRLPNGHYELGVHIADVGYYVKENSPLD 300 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA RGTSVY +VIPMLP LSN +CSLNP+VDRL M C M + +GR+ ++ + Sbjct: 301 KEAFRRGTSVYLVDRVIPMLPPRLSNNICSLNPKVDRLTMSCVMEIDGQGRVVSHEIVPS 360 Query: 374 VMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 V+ + R+TY V IL+ D++LR +YAPLV E + L +L R RG I F+ + Sbjct: 361 VIRTAERMTYNDVRKILEDEDEELRARYAPLVPMFERMRELALILRDKRMRRGAIDFDFD 420 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E K N IE R+ A ++IEE M+ AN + A P ++R+HD+P + Sbjct: 421 EIKVRVNDLGEPTSIEPRPRSIAERIIEEFMLAANETVAEHFHWLGVPFIYRVHDEPDPD 480 Query: 493 AITSFRSVLAELGLELPG--GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 I L G + G G K PR E+L V + +A M+ ++LRSM+QA Y P Sbjct: 481 KIIHLNLFLHNFGYHVKGSAGGKVHPRALQEVLNEVEGKREARMISMVMLRSMQQAKYRP 540 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 E GHFGLA + Y HFTSPIRRYPDL +HR I+ +L + + E + Sbjct: 541 ECTGHFGLAAEYYTHFTSPIRRYPDLAIHRIIREVLTRGSLSPQREA------HLREFVA 594 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + + S ER A EA R+V ++M + F G+IS V FG FV+LD+ ++G Sbjct: 595 EASRQSSERERIAQEAEREVDQLKMVEYMQAHIDEEFDGIISGVVPFGLFVQLDN-GVEG 653 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 L+H+S L +DYY + L+GE + + +R+GD V V V ++ +IDF L+ R Sbjct: 654 LIHISELSDDYYVLHERQMALIGERTRRVFRIGDPVRVVVIRAVKEDLRIDFGLVEHLRE 713 Query: 731 PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKP 790 VG + +R ++ ++ R E+ K A++D + + Sbjct: 714 ATYVGGEGPGAIVYDEDLTPKERRETERRRREAASRASGRRERDDKRHRARRDRKGEARA 773 Query: 791 SAKTQKIAAATKAKRAAKK 809 + + + AA Sbjct: 774 GVRLSDWNDGEEERSAALG 792 >UniRef50_A1WUS9 Ribonuclease R n=9 Tax=Gammaproteobacteria RepID=A1WUS9_HALHL Length = 842 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 374/797 (46%), Positives = 511/797 (64%), Gaps = 18/797 (2%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP+QERE KY NPIPSRE++LE L +P R E+A L +E E E LRRRLRAM Sbjct: 12 RDPYQEREQAKYDNPIPSREYLLELLAAHRRPLGRREIADALGLESPEHHEALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR+ Y + + +LV+G V+G DG GFL +G D L LS QM+ +HGD Sbjct: 72 ERDGQLVRNRRRGYLVVDHSELVRGRVMGRPDGSGFLLPDGTGDRLALSPRQMRCLLHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 + +A+ G D G + +V +L QI GR+F E GVGF+VP++ RL D+L+ PD Sbjct: 132 RAVARITGRDEHGTPQGELVEILERGNRQITGRFFEEHGVGFLVPENKRLQQDVLLAPDG 191 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 GA G + V E+ +P R + +G+I++VLG + G +A R H IP WP VE Sbjct: 192 RGGAEDGELAVAEILAQPNERRQPIGRIIQVLGRTIHVGEEDMVAARIHGIPMDWPAEVE 251 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VA EEVPE K GR DLR LPLVTIDG DA+DFDDA+YCE G WRL VAIADV Sbjct: 252 KEVAAFGEEVPEADKEGRTDLRRLPLVTIDGADAKDFDDALYCEPTAKG-WRLVVAIADV 310 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YVRP T LD+EAR RG SVYFP V+PMLPE LSNGLCSLNP+VDRL MVC+M + Sbjct: 311 SHYVRPGTALDQEARLRGNSVYFPRSVVPMLPEALSNGLCSLNPKVDRLAMVCDMLLQGN 370 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL--REQYAPLVKHLEELHNLYKVLDKA 420 G++ +FY AV+ S ARLTY + + +V+HLE LH LYK L KA Sbjct: 371 GKVLRSRFYRAVIQSAARLTYEQAAAAVVDGDRKVRSAIGDEVVRHLENLHGLYKTLRKA 430 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ERG I F++ E + F+ E R+ +E T+RND HK++EECMI AN+ A+F+ K K P Sbjct: 431 RDERGAIDFDTTETEMRFDDEGRVVAVEPTERNDFHKVVEECMIAANVCTAKFLLKNKVP 490 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 +L+R+H++P + + + LA+ GLEL GG++P +DY ++E +RPD +++T+LL Sbjct: 491 SLYRVHERPGEQKLEQLKEFLAQAGLELGGGDEPTGKDYGRIMEQARERPDRHLIETVLL 550 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+ A Y P+N GHFGLAL++Y HFTSPIRRYPDL +HR I +++ +G Sbjct: 551 RSMQAAEYRPDNAGHFGLALEAYTHFTSPIRRYPDLVIHRGIGHVIDGHRGRS------- 603 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + +++ LG+HCSMAERRADEATRD LKC+++ D +G+ F GVI++VT FG F Sbjct: 604 -FPMTHNDLVTLGEHCSMAERRADEATRDAEMTLKCEYLSDHLGDEFTGVIAAVTSFGLF 662 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L+ +++DGLVH+++L++D++ FD VG RL+G+ +G+ YRL DRV VRV V+ D+RKI Sbjct: 663 VSLEGVYVDGLVHITNLESDFFHFDSVGHRLVGDRTGKEYRLSDRVRVRVGRVDKDDRKI 722 Query: 721 DFSLISSE----RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFR---GEK 773 D +++ P + + + K G GK +R + + S R G Sbjct: 723 DLEVVAHPVDADGEPLDGSRKRGKGGKSGQGGKARSERSGGKQSAARQGASGGRAKSGRG 782 Query: 774 KTKPKAAKKDARKAKKP 790 K P + KP Sbjct: 783 KAAPSGSGPSGDGKGKP 799 >UniRef50_B5CPU6 Putative uncharacterized protein n=9 Tax=Bacteria RepID=B5CPU6_9FIRM Length = 749 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 253/722 (35%), Positives = 395/722 (54%), Gaps = 13/722 (1%) Query: 6 FQEREAEKYANPIPSREFIL-EHL-TKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 + RE + R+ ++ + + P E+A+ L I EQ + L+ L ++ Sbjct: 39 RKSRERKDMDQTFEKRKKVIYDFICDDFYVPMKIKEIAMVLQITK-EQRKELQEVLDSLV 97 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 +G++ ++R Y+ + + GT + G+GF+ VEG+++D+++ +E + GD+ Sbjct: 98 EEGKISLSKRGKYS-KGQAKRIMGTFQANIRGFGFVMVEGQEEDIFIPAENVNGAFQGDE 156 Query: 124 VLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 V G+ R+E +IV ++ + +++VG Y GFV PD+ R DI IP + Sbjct: 157 VECIITGSPSGRRQEGKIVGIISHQVTKVVGLYEKSKSFGFVRPDNQRFLKDIYIPAGKE 216 Query: 184 MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 + A G VVVELT K GKI+E+LG G + ++ +IP +P+ V Sbjct: 217 LHAMTGHKVVVELTSYGGEHMKPEGKIIEILGHVNDPGTDILSIVKDFDIPTEFPEKVLN 276 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 Q + +EV E AGR+DLRD +VTIDGEDA+D DDAV G +RL V IADV+ Sbjct: 277 QAVRVGKEVSEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSVV-MDGENYRLGVHIADVT 335 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 YV+ + LD EA RGTSVY +VIPMLP+ LSNG+CSLN +RL + C MTV+ +G Sbjct: 336 NYVQERSALDWEALKRGTSVYLADRVIPMLPQTLSNGICSLNAGENRLTLSCIMTVTPEG 395 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 + ++ E V+ R++Y V +L GD + E V + + L ++ + R + Sbjct: 396 EVVDHQIAETVICVDKRMSYNGVAKVLAGDAEALEADREFVPMILRMKELSDIIRERRAK 455 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I F+ E K I + + R I+ RNDA K+IE+ M+LAN + A + P L+ Sbjct: 456 RGSIDFDFPETKIILDEKGRPVEIKPYDRNDATKIIEDFMLLANETVAEEYFWREIPFLY 515 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R HD P E I + + G L N+ P++ +LL V P+ ++ + LRSM Sbjct: 516 RTHDVPDEEKIRKLGTFINNFGYNLHVRNEVRPKEIQKLLCKVEGTPEEPLISRLALRSM 575 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 KQA Y EN GHFGLA + Y HFTSPIRRYPDL +HR IK L Sbjct: 576 KQAKYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIHRIIKENLRG-------RLTGERME 628 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + + + ++ CS ER A+E+ R+V K ++M +G ++GVIS VT +G +V L Sbjct: 629 HYRKILTEVASQCSQRERTAEESEREVVKLKKAEYMQAHIGGEYEGVISGVTKWGVYVEL 688 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 + I+GL+HV+ + +D+Y F + ++GE +G+T++LG +V++RV + +R ++F Sbjct: 689 PNT-IEGLIHVADMRDDHYNFIEETYEMVGEHTGKTWKLGQKVQIRVTDADRLQRTVNFE 747 Query: 724 LI 725 + Sbjct: 748 FV 749 >UniRef50_Q0VMF7 Ribonuclease R n=2 Tax=Alcanivorax RepID=Q0VMF7_ALCBS Length = 828 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 357/811 (44%), Positives = 497/811 (61%), Gaps = 25/811 (3%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP +REAEKY NP+PSRE IL+ L + KP S + LA L ++ E ++ GL RR++AM Sbjct: 19 DPHADREAEKYENPVPSRELILDVLNDQGKPLSFELLAQLLEVDEEGEV-GLDRRIKAML 77 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGD 122 RD QLV R + R+DL+ G V GH+DG+GFL + + + DL+L+ QM+ + GD Sbjct: 78 RDAQLVQNRNGKVGVVSRMDLIAGRVQGHKDGFGFLIPDDKTQGDLFLAPRQMENVMDGD 137 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +VL G +R G++EARIV + ++++GRY EAG+ F+ P++ R++ ++LI Sbjct: 138 RVLVSNAGYNRFGKKEARIVEITERVATEVIGRYSREAGISFIEPENRRITKEVLIEDKN 197 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + G V +TQ P+R + ++ E++ GM V++ALR EIP++WP+ VE Sbjct: 198 GIKPNPGDHVRATITQYPSRDHHVLVRLEEIIATPDEAGMEVEVALRRFEIPHVWPEGVE 257 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++VP E KA RVDLRDLPLVTID E ARDFDDAVY E++ GGWRL VAIADV Sbjct: 258 AAAEKFGDKVPHEPKAHRVDLRDLPLVTIDDETARDFDDAVYVERRPRGGWRLIVAIADV 317 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+P + LD+EA RG SVYFP++VIPMLPE LSNGLCSLNP VDRLC+ C+M +S+ Sbjct: 318 SHYVQPGSELDQEAAKRGNSVYFPNRVIPMLPEALSNGLCSLNPHVDRLCLYCDMKISAN 377 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD------LREQYAPLVKHLEELHNLYKV 416 GRLT + F E VM S RLTY KV I++ + + + + H ++ Sbjct: 378 GRLTRFIFREGVMRSRHRLTYNKVGAIIEEPESELAQDTVASLDDESLDMIWSFHEMFLA 437 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L + R ERG I F+S++ + I++ ++IE I QRN AH +IEE M+ ANI +A+ +EK Sbjct: 438 LRRRRAERGAIDFDSDDTRIIYDENKKIEAIVPVQRNVAHIMIEEAMLAANICSAKLLEK 497 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR--DYAELLESVADRPDAEM 534 A PAL+R H+ P E ++ + L LGL + P+ + +L E + +RPD + Sbjct: 498 AGVPALYRNHEPPKEERLSKLQQFLGGLGLSIAWSEGAAPKPYVFQDLREEILERPDRNV 557 Query: 535 LQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA------- 587 +QTM+LR+M QA Y+ EN+GHFGLA ++Y HFTSPIRRYPDL +HRAI++L+ Sbjct: 558 IQTMMLRTMSQAKYEAENKGHFGLAYKAYTHFTSPIRRYPDLLVHRAIRFLIRSNGEPNH 617 Query: 588 -KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 G+ Y+ +M+ +G+ CSM ERRADEATRDV WLKC FM +G V Sbjct: 618 VDNPGNLPEIPRQKILPYNQADMVAIGEQCSMTERRADEATRDVVSWLKCQFMEAHLGQV 677 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F+G IS V FG FV+L DL IDGLVHV++LD+DYY FD+V L GES+G+ + LGD V Sbjct: 678 FEGAISGVASFGLFVQLSDLHIDGLVHVANLDSDYYHFDEVSLTLTGESTGRQFGLGDAV 737 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAR-------EKAKKGDAGKKGGKRRQVGK 759 V V AV+ ++RKID L S + + K A + Q + Sbjct: 738 TVCVAAVHTEDRKIDLQLESFTPSGKGRPKAASKKKPSGGRGKGGRSGNAGKAESGQSER 797 Query: 760 KVNFEPDSAFRGEKKTKPKAAKKDARKAKKP 790 + + D K+ P KK AR+ KK Sbjct: 798 EKLAKGDIPKAKAKRKGPPRGKKAARRTKKS 828 >UniRef50_UPI0001BCCDEB ribonulease R n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCCDEB Length = 900 Score = 742 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 286/791 (36%), Positives = 415/791 (52%), Gaps = 28/791 (3%) Query: 21 REFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + +P E+ L + EE+ L L A+E +G ++ R Y LP Sbjct: 10 KERIHAFMREDAYRPLPAAEVLKGLGLSDEEE-PLLSSALDALEEEGVIIRNRSGLYGLP 68 Query: 80 ERLDLVKGTVIGHRDGYGFLRVE----GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 R++LV G + G+GF+ + + D+++ + T +HGD+V+A+ ++ G Sbjct: 69 SRMNLVVGRLSMSPKGFGFIIPDARENEEETDVFVPGAALATAMHGDRVVARVTPSESPG 128 Query: 136 R-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 R RE I+R+LV + IVG + GFV PD +++ DI + GA+ G VVV Sbjct: 129 RAREGEIIRILVRANTHIVGTFERSKAFGFVTPDSTKIGRDIFVLKKDFGGAKTGSKVVV 188 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+T+ P R A G+++EVLG G+ V +R +++ +P V A E Sbjct: 189 EITKWPEARRSAEGRVIEVLGKTGDPGVDVLAVMRAYDLDENFPPDVAAAAAQCPENPLP 248 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E AGR D RD P+VTIDGED +D DD +Y +R G + L V IADVS+YVR PLD Sbjct: 249 EEYAGRRDRRDFPIVTIDGEDTKDIDDGIYA-YERDGEFFLGVYIADVSHYVRAGEPLDV 307 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RGTSVY +VIPMLP+ LSNG+CSLN VDRL M CEM + + G + Y+ V Sbjct: 308 EAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMQIGADGEVKSYEIVPCV 367 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + RLTYT V +L G++ + LE L L +VL R RG I FE E Sbjct: 368 IHVARRLTYTLVNKVLAGEEPFVSDNEDIRPMLETLRRLREVLRGKRHRRGSIDFELPEI 427 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K +A +E+ + +IEECM+ AN + AR +E +EP ++R+H+ P +E I Sbjct: 428 KVKLDAAGHPIALERRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHEAPVSEKI 487 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 F+S+LA LGL L K RD ++L+ V P+ ++ + LRSM+QA Y + Sbjct: 488 ERFQSLLAALGLRLNVDEDGKVRSRDIQQVLDRVKGAPEERIIGAVALRSMQQARYATAS 547 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GHFGLA + Y HFTSPIRRYPDL +HR ++ A + + Sbjct: 548 LGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIPAEKRERLRTV------LSEA 601 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S ER A EA R+ D K ++M VG F+GVIS VT FG FV L++ ++GLV Sbjct: 602 AEHSSARERIAVEAERETTDMKKIEYMAQFVGETFEGVISGVTAFGIFVELEN-GVEGLV 660 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE-RAP 731 HVS++ NDYY + + ++GE +G YRLGD V + + ++ R +DF L + P Sbjct: 661 HVSTMVNDYYSYVEEQYAMVGERTGARYRLGDAVTIIITRADVQARTLDFVLKDNGVYDP 720 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPS 791 V +A+ KA + KRR K +G++K +P A A +A++ Sbjct: 721 DTVKASAKPKAPQEKPDASSEKRRPRKK----------KGDRKHEPIIADTQASRAERRK 770 Query: 792 AKTQKIAAATK 802 K Sbjct: 771 KTRGAHGTGGK 781 >UniRef50_B6BU65 Ribonuclease R n=1 Tax=beta proteobacterium KB13 RepID=B6BU65_9PROT Length = 723 Score = 742 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 321/726 (44%), Positives = 466/726 (64%), Gaps = 18/726 (2%) Query: 2 SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRA 61 S DPF +RE++KYA+PIPSREFIL+ + K P ++EL L I+ E+ E L RL+A Sbjct: 13 SNDPFFKRESKKYAHPIPSREFILDVMKKCGTPIKKNELIKLLRIKKSEE-EALTHRLKA 71 Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIH 120 M RDGQ++ R+ + + E+++ + G V GH DGYGFL + DD++L+ ++M H Sbjct: 72 MRRDGQILKNRKDVFCIAEKINCISGKVQGHPDGYGFLIPDELEHDDIFLNQKEMGKVFH 131 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 D+V+ Q G DRKG+ E IV VL + +VGR GV V +D R+ DI+IP Sbjct: 132 NDRVMVQISGLDRKGKAEGTIVEVLERFNTVLVGRVVQSYGVTIVAAEDKRIHQDIIIPY 191 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + M A G +V VE+T +P K +G+I+EV+G +G+ ++IALR H +P+ + + Sbjct: 192 GKDMDAVPGDIVEVEITTQPAMNIKPMGQIIEVIGKLDDSGIEIEIALRKHNLPFRFDKK 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 +++++ + + + + R+DLRD +TIDGE A+DFDDAVY E ++L V IA Sbjct: 252 IDKELEKISD-ISDGDLKDRIDLRDNFFITIDGETAKDFDDAVYAE-NHKEFFKLLVGIA 309 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+ + LD+EA +RG SVYFP +VIPMLPE LSN LCSLNP VDRL M+ +M ++ Sbjct: 310 DVSHYVKEGSALDKEAFDRGNSVYFPRRVIPMLPEKLSNKLCSLNPHVDRLVMIADMVIT 369 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 KG + Y+FY AV++S RLTYT V ++ Q+ +E L++HL L ++Y+VL +A Sbjct: 370 KKGEVQSYEFYPAVINSKHRLTYTLVDQLIFQKQNQKEHPKELIQHLNTLKSVYEVLSEA 429 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R +R I F+ E++ +F+ +I+ I RN+AH+LIEECM+ AN+SAA ++ K Sbjct: 430 RNKRHAIEFDRIESQILFDEGGKIKDIVPLTRNEAHRLIEECMLAANVSAADYLLSKKI- 488 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFR H+KP E + +SVL++ + + GG P DY EL+ + ++ + +MLQTM+L Sbjct: 489 GLFRNHEKPKDEKLEILKSVLSDFKVHMEGGLSPVVMDYVELINKIKNKENFQMLQTMIL 548 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+QA Y N+GHFGLA Y HFTSPIRRYPDL +HR IK L K++ Sbjct: 549 RSMQQANYGSVNKGHFGLAYDKYTHFTSPIRRYPDLVVHRLIKSFLNKKRLKT------- 601 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + + +G HCS ERRADEATRDV +WLKC +M D++G F VISSVT FG F Sbjct: 602 ------DNLESIGNHCSSTERRADEATRDVENWLKCFYMKDRIGEKFDVVISSVTNFGIF 655 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V + L I+GLVHV+ L NDY+ F++ Q L GE + + +RLGD + V++ V+++ K+ Sbjct: 656 VEISRLHIEGLVHVTELGNDYFVFNKEKQMLEGEKTKKKFRLGDELAVKLIRVDLELGKM 715 Query: 721 DFSLIS 726 DF+ I Sbjct: 716 DFTYIK 721 >UniRef50_C5EGX9 Ribonuclease R n=3 Tax=Clostridiales RepID=C5EGX9_9FIRM Length = 766 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 256/757 (33%), Positives = 385/757 (50%), Gaps = 60/757 (7%) Query: 21 REFILEHL--TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 R+ IL L K P ELA+ L+I Q E L L A+ +G++ +++ Y Sbjct: 9 RKQILTELMDDKAYVPMKAKELAILLNIPKS-QREDLMEVLNALVAEGRIGVSKKGKYGK 67 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP---------- 128 E V G GH G+GF+ VEG + D+++ ++ +HGD+V Sbjct: 68 AETFS-VNGIFSGHPKGFGFVTVEGMEQDVFIPEDKTGAALHGDRVQIVVEHDSRMSGSR 126 Query: 129 -LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR 187 R E ++RVL +IVG Y GFV+PD+ +L+ DI IP MGA Sbjct: 127 SGMGSGGRRAEGAVIRVLEHANQEIVGYYQKNKNFGFVIPDNQKLAKDIFIPQGCDMGAV 186 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 G VVV++T + + K G++ E++G G + +R + +P +PQ V +++ Sbjct: 187 TGHKVVVKITDFGSEKHKPEGRVTEIIGHVNDPGTDILSIVRAYGLPEAFPQEVMEEIED 246 Query: 248 LKEEVPEE-----------------------------------AKAGRVDLRDLPLVTID 272 + E+V +GR+DLR L VTID Sbjct: 247 IPEDVTVPGQPYVPGQTDIPGQPAKPGSPYGISDLTSHDGWGGELSGRLDLRGLQTVTID 306 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 GEDA+D DDAV + G + L V IADVS+YV+ +PLDREA R TSVY +VIPM Sbjct: 307 GEDAKDLDDAVTICRDNQGHYILGVHIADVSHYVKEGSPLDREAFKRSTSVYLVDRVIPM 366 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG 392 LP LSNG+CSLN DRL + C M V +G + ++ E V+ R+TYT V I+ Sbjct: 367 LPHKLSNGICSLNAGTDRLALSCIMEVDGQGTVLDHRIAETVIHVDRRMTYTAVNAIVTD 426 Query: 393 -DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 D+ + +Y V + + L +L ++R +RG I F+ E+K + + + + I+ + Sbjct: 427 RDEAVMAEYEDFVPMFDCMKELADILRESRRKRGAIDFDFPESKIVLDGQGKPLEIKPYE 486 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 RN A ++IE+ M+LAN + A P L+R HD P E + + + G + Sbjct: 487 RNAATRIIEDFMLLANETVAEDYYWQSIPFLYRSHDNPDPEKMKQLGTFINNFGYFIKMQ 546 Query: 512 N-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 + + P++ +LL+ + P+ +L + LRSMKQA Y + GHFGLA + Y HFTSPI Sbjct: 547 HGEIHPKELQKLLDKIEGTPEEALLSRLTLRSMKQAKYTTQCSGHFGLATRYYTHFTSPI 606 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRYPDL +HR IK L + + + + ++ S ERRADEA R+ Sbjct: 607 RRYPDLQIHRIIKETLKGGLSDKRAG-------HYEKILPEVAVQTSALERRADEAERET 659 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 KC++M +G F G IS VT +G +V L + ++GLV +S LD+DYY FD+ Sbjct: 660 DKLKKCEYMSRFIGQDFDGAISGVTNWGLYVELPNT-VEGLVRMSDLDDDYYIFDEQHYE 718 Query: 691 LMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 L+GE + +TY+LG + V V + + R +DF L Sbjct: 719 LIGEMTKKTYKLGQPIRVTVSSTDRLLRTVDFILAKD 755 >UniRef50_Q2RLT1 Ribonuclease R n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLT1_MOOTA Length = 770 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 279/780 (35%), Positives = 412/780 (52%), Gaps = 15/780 (1%) Query: 19 PSREFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 RE IL + + +P + EL V L IE E L ++E++G +V TR+ Y Sbjct: 1 MDREEILTLMRARSYRPLTASELMVALGIEDEG---AFMELLHSLEQEGYIVRTRKDKYG 57 Query: 78 LPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 LPE++ LV G + GY F+ + ++DLY+ + + +HGD VLA+ L R Sbjct: 58 LPEKMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMHGDLVLARVLPGTTGRR 117 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 +E I+RVL ++VG + + FV+PDD+RL DI+IP + AR VVVE+ Sbjct: 118 QEGEIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPAGASLEARDRDKVVVEI 177 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 T+ P R G++++VLG G+ V ++ + + +P V ++ + ++ Sbjct: 178 TRWPEARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREAEEIPRDLEPGE 237 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLRD LVTIDG DARD DDAV E++ G + L V IADVS+YVR PLDREA Sbjct: 238 LAKRRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGRPLDREA 297 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 NRGTSVYF +VIPMLP LSN +CSLN DRL + MT+S G + Y+ + +V+ Sbjct: 298 FNRGTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKDYELFPSVIR 357 Query: 377 SHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 R+TY V IL+ D +L E+Y LV + + L +L + R RG I F+ EAK Sbjct: 358 VRERMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAIDFDFPEAK 417 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 + + I R A +IEE MI+AN AR + + PA++R+H++P+ + + Sbjct: 418 VKLDDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEEPAPDKLE 477 Query: 496 SFRSVLAELGLELPGGNKP--EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + LA GL + + PR + E+L +V RP+ ++ T++LRSM A Y + Sbjct: 478 ALNTFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHARYAGDCL 537 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y HFTSPIRRYPDL +HR ++ + + Sbjct: 538 GHFGLASPYYCHFTSPIRRYPDLVVHRILR------ETWSPAGFSAERMAQLSAFVALAA 591 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 S E+ A+EA R+ D K +M VG F GVIS V +GFFV L++ ++GLVH Sbjct: 592 VQASEREKLAEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVELENT-VEGLVH 650 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 VS+L +DYY + + L+GE +G++YR+G V V V V++D R++DF L+ E Sbjct: 651 VSTLTDDYYHYQEDQLALVGEHTGKSYRIGQPVTVLVTRVSVDARQVDFELVKPEEEKTG 710 Query: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAK 793 A K K + + G K + + G+ +K K + R K Sbjct: 711 PVGGAGAKVKGHPVKAREREAGPSGGKARKKAMTMAGGKTGSKGKGKARVRRNKGTRRRK 770 >UniRef50_C0W9P5 Ribonuclease R n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9P5_9FIRM Length = 769 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 277/774 (35%), Positives = 418/774 (54%), Gaps = 18/774 (2%) Query: 20 SREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 R+ +L ++ P S D+L +L +G+ L L + M +DG LV TR L Sbjct: 6 IRQDVLTYMESHATHPVSYDDLGRDLRYKGKG-LGALWTEIELMIKDGLLVKTRFNTLGL 64 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEG--RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 P + LV G + + GYGF+ + DL++ + + ++ D V+A+ GR Sbjct: 65 PRAMGLVTGRLQVTQKGYGFVVPLEKTEEGDLFIPAMHLSGAMNEDLVIARVSDHGYGGR 124 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 RE +++R+L + VG + GFV PD+ + DI + + AR G VVV++ Sbjct: 125 REGKVIRILERAHERFVGTFTRSGDFGFVTPDNRHIGQDIYVRRKDFLNARNGDKVVVKI 184 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 T P R KA G I E+LG G+ + ++ ++P +P+ V++ + + +P++ Sbjct: 185 TVWPNGRQKAEGTITEILGKKGDVGIDIISIIKDKDLPLDFPKEVKEAAQLVPQVIPKKD 244 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 GR+D R P++T+DG D++D DDA+Y EK+ + L V IADVS+YVRP LDREA Sbjct: 245 LKGRLDRRKWPIITVDGVDSKDLDDAIYAEKRGED-YFLGVYIADVSHYVRPRGELDREA 303 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVM 375 RGTSVY +V+PMLP +LSNG+CSLN +RL M CEM +S G++ Y +V+ Sbjct: 304 YARGTSVYLVDRVLPMLPPLLSNGICSLNEGEERLTMSCEMVISGKTGKVLSYDIAPSVI 363 Query: 376 SSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 +S R+ Y V IL D LRE+Y+ +V LE + L +L K R RG I FE E Sbjct: 364 ASRHRMNYPDVAKILTDRDTALREKYSDIVPMLETMEELCTILHKKRVRRGAIEFEIPEV 423 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 K I + ++R + R A +IEE M+ AN + A + K P ++R+HD P + + Sbjct: 424 KVILDEKKRPIDVHLRHRTIAEMMIEEFMLAANETVAAHMTKHHYPFIYRVHDVPDEDRM 483 Query: 495 TSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 S ++A+ G L K P+ L V +P+ M+ T+ LRSMKQA+Y EN G Sbjct: 484 QSLSKIMAQFGTVLKIEGKMRPKVLQMALRKVKGKPEEGMISTLALRSMKQAVYQTENVG 543 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLA + Y HFTSPIRRYPDL +HR +K ++ + +++ + Sbjct: 544 HFGLAAKDYTHFTSPIRRYPDLLVHRLLKEQRTGQKLSKKEKENLN------DKLSLMAS 597 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 H S ER A EA R+ + ++ML VG F G IS VT FG FV+L++ I+GLVH+ Sbjct: 598 HASTRERLAIEAERETDELKMTEYMLPYVGQEFDGTISGVTSFGMFVQLEN-GIEGLVHI 656 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE---RAP 731 SSL +DYYR+D+ L+GE G++YRLG V ++V V+++ERKIDF L E A Sbjct: 657 SSLLDDYYRYDEEHFALVGEHGGKSYRLGSPVRIKVFHVSVEERKIDFILPEFETFVTAR 716 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 + + +++ K KKGG+ + + +G + K K + Sbjct: 717 KETVPSDKKRTPKKQTVKKGGRNKLASQTQKRGGTR-QKGSQHGKNKRQNHRRK 769 >UniRef50_D1VT23 Ribonuclease R n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT23_9FIRM Length = 704 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 245/715 (34%), Positives = 383/715 (53%), Gaps = 12/715 (1%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 +E ILE + K KP ++++LA +I+ ++ E L ++R G + ++ Sbjct: 1 MIKEKILEVI-KNSKPQTKEDLAKVFNIKKRDR-ENFYFLLENLQRQGLVFEDKKAKLIF 58 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 + G + + G+GFL E +D+Y+S E + ++GD V+ + + E Sbjct: 59 VDNKTYFFGKIQTSKKGFGFLITENLDEDIYISEENLNFALNGDDVIVKKYKDSSGSKPE 118 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 ++V ++ ++VG + GFVV DD++ + DI IP ++ GA+ G V+V++ + Sbjct: 119 GKVVFIVERVNQKVVGIFQATKNFGFVVADDAKFATDIYIPKKRMNGAKNGQKVLVKIDK 178 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P+ K G+++E+LG + + ++ +IP + + V+++ L+ V E Sbjct: 179 WPSPGKKPEGRVLEILGYPDEPHVDILSVAKSLDIPMEFSKTVKREAKSLETSVQAEEIK 238 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R+DLRD TIDG D++DFDDAV E G + L V IADV++YV+ +P+D EA Sbjct: 239 SRLDLRDKLTFTIDGADSKDFDDAVSLEILENGNYLLGVHIADVAHYVKEDSPIDEEAFL 298 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 RG SVY ++VIPMLP LSNG+CSLN VDRL + C M V KG++ K E+V++S Sbjct: 299 RGNSVYLLNKVIPMLPFELSNGICSLNEGVDRLTLSCIMEVDKKGQVINKKICESVINSK 358 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RL Y V L+ + L + L+ ++ L K+L + R E G I FE EA Sbjct: 359 KRLVYDYVSDYLEDGVSD-DSLIGLEETLKNMYELSKILQEKRREMGSIDFEVPEALIKV 417 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + I + +R A+KLIE+ M+LAN + A + K + P L+RIH+KP E I Sbjct: 418 TEDGWPTEILRRERRSANKLIEDFMLLANTTVAEYFFKFEIPFLYRIHEKPREEKIQELN 477 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 S L LG G++ + RD +LL+ V + + + TM LR+M +A Y P+N HFGL Sbjct: 478 SYLRPLGYMANFGSEIKSRDIQKLLKKVQGKKEELFISTMALRAMAKARYSPKNDIHFGL 537 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 Q Y HFTSPIRRY DLT+HR IK L + +++ + +H S Sbjct: 538 CFQYYTHFTSPIRRYADLTVHRIIKDFLRGDLSKNKVKKL-------NDDLQGISEHISA 590 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A EA R V ++M D++G + G+IS +T FG FV L++L I+GLV ++ Sbjct: 591 TERVAQEAERQVESIKMAEYMSDRIGKKYNGIISGITNFGIFVELENL-IEGLVSYKTMK 649 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 +Y FD V R + + ++ +GD V ++V VN+ KIDF L S + Sbjct: 650 G-FYEFDPVNYRAVDVDTKNSFGIGDLVTIKVVNVNLTLGKIDFELESDDNEKEE 703 >UniRef50_Q3A2L6 Exoribonuclease RNase R n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A2L6_PELCD Length = 720 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 276/727 (37%), Positives = 401/727 (55%), Gaps = 17/727 (2%) Query: 22 EFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + +L+ L++ KP S ++ + + +++ L R L ++ +G + R+ ++LP Sbjct: 6 DDLLKLLSQNRGKPLSGRQIVSQFQLSRDQRQHAL-RMLDSLADEGLVRRVRKGLFSLPR 64 Query: 81 RLDLVKGTVIGHRDGYGFLRVEG-RKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 ++V G V HR GYGF+ E + D+++ + M+ + GD+V + + R G E Sbjct: 65 SSEMVVGKVSVHRQGYGFVIPEAAGQADVFIPARYMREVMDGDRVAVRVQRSSRGG-YEG 123 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 R++RVL IVG Y G G V+P D LS I++ A G +VVV + Q Sbjct: 124 RVLRVLSRAHQTIVGTYRPGHGYGMVLPSDPALSHGIMLLSPAPGDAHAGDLVVVSIAQY 183 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P RR G +VEVLGD + + A +P + A +Q + V EE AG Sbjct: 184 PGRREPPRGVMVEVLGDPADPQVEILAAAYKFNLPREFSTATLEQARSIAPVVREEDLAG 243 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR VTIDGE A+DFDDAV ++ GG RLWVAIADV +YV P +P+DR+A+ R Sbjct: 244 REDLRSTLFVTIDGETAKDFDDAVAVSREPGGCMRLWVAIADVGHYVAPDSPIDRDAKER 303 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVYFP +PMLPE LSNG+CSLNP VDRL + EM +G + +F+ AV+ S A Sbjct: 304 GTSVYFPGSCLPMLPEALSNGICSLNPGVDRLVLTAEMLFDKQGVMLESRFFHAVICSKA 363 Query: 380 RLTYTKVWHILQGDQ-DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY +V +L PL+ L + L L R RG + F+ E + + Sbjct: 364 RLTYREVADVLAAGAIHNPALSDPLISQLHHMSELASRLQAMRFRRGSLDFDLPEPEIVL 423 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + R ++I + +R AH+LIEE M+ AN + A+F+ P L+RIH+ P E + +F+ Sbjct: 424 DLQGRPDQILRAERTVAHRLIEEFMLAANEAVAKFLSDRNIPLLYRIHESPEVEKLFAFQ 483 Query: 499 SVLAELGLEL-PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + LA L + L + P +LE+V DRP+ M+ LLRSMKQA Y +N GHFG Sbjct: 484 TFLAHLNIGLVVTDDSVSPTVLQGVLETVRDRPEERMVNQFLLRSMKQARYSSDNLGHFG 543 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y HFTSPIRRYPDL +HR + L+ + + +LG S Sbjct: 544 LASDCYCHFTSPIRRYPDLVVHRILSRALSTSKRSSATV-----------NLEELGDLTS 592 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 ERRA EA RD+ +C FM D+VG VF ++ V FG FV L D+F++GLVHV++L Sbjct: 593 QKERRAMEAERDIVALRRCQFMADKVGQVFDACVADVQPFGIFVELKDVFVEGLVHVATL 652 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 +DYY FD+ RL+G+ + +R+G+ V V++ VN++ R++DF L + Sbjct: 653 TDDYYEFDEELHRLVGQRRRKIFRIGEVVTVQLVKVNLERRELDFELQGMRTDMASATAG 712 Query: 738 AREKAKK 744 R KK Sbjct: 713 RRRSKKK 719 >UniRef50_C4Z970 Ribonuclease R n=8 Tax=Clostridiales RepID=C4Z970_EUBR3 Length = 716 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 251/709 (35%), Positives = 381/709 (53%), Gaps = 14/709 (1%) Query: 21 REFILEHL-TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ + + + P EL + L + +E L + L ++ +G++ ++R Y+ Sbjct: 19 KKMVYDFMCDDMYVPMKIKELCIVLGV-KKEDRPQLEQILLDLQAEGRITLSKRGKYSKS 77 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 E V G H+ G+GF+ VEG DD+++ +E + +H D V R+E Sbjct: 78 EIKKTV-GVFTAHQRGFGFVTVEGEPDDIFIPAEYVNGAMHMDTVEITISPVTTGRRKEG 136 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 ++V V+ Q+V Y GF VPD++R DI IP ++ GA G VVVE+T Sbjct: 137 KVVSVIERGMKQVVCTYEASDNFGFAVPDNTRFGTDIFIPKERSKGAMSGHKVVVEITSY 196 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + K GK+VE++G G + ++ +++P + + + QV + ++V AG Sbjct: 197 GKKGKKPEGKVVEIIGHIDDPGTDILSIVKAYDLPVDFSEKIMHQVQNVAKDVTPADMAG 256 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+DLRD +VTIDGEDA+D DDAV G + L V IADVS YV+ + LD EA R Sbjct: 257 RMDLRDWMMVTIDGEDAKDLDDAVSL-YMDGDNYVLGVHIADVSNYVQEHSALDVEALKR 315 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY +VIPMLP LSNG+CSLN DRL + C MT++ KG + +K E V+ ++ Sbjct: 316 GTSVYLVDRVIPMLPRELSNGICSLNEGCDRLALSCIMTINKKGEVIDHKIAETVIKTNR 375 Query: 380 RLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+TYT V IL D + E+Y LV E++ L +L K R +RG I F+ E K + Sbjct: 376 RMTYTNVKKILADKDAAVIEEYKELVPMFEKMAELAAILRKKRMKRGSIDFDFPETKVVL 435 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + I+ RN A KLIE+ M++AN + A + P ++R HDKP +E I Sbjct: 436 DEDGHPIDIKPYDRNVATKLIEDFMLIANETVAEDYFWQEIPFVYRTHDKPDSEKIAKLS 495 Query: 499 SVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + + G L G ++ P++ +LL V + ++ + LRSMKQA Y GHFG Sbjct: 496 TFINNFGYTLHIGADEVHPKELQKLLMKVDGTDEESLISRLTLRSMKQARYTTACTGHFG 555 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y HFTSPIRRYPDL +HR IK + + + + + S Sbjct: 556 LAANYYCHFTSPIRRYPDLQIHRIIKENIRG-------RMNDNRREHYESILDAVAKQAS 608 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 ERRA+EA R+ KC++M + +G F+GVIS VT +GFFV L + ++GLV V+ L Sbjct: 609 ETERRAEEAERETVKLKKCEYMSNHIGECFEGVISGVTEWGFFVELPNT-VEGLVRVTDL 667 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 +D+Y F + L G ++ + Y+LG +++V V++ + R IDF Sbjct: 668 TDDFYEFYEDTYELAGTATNKRYKLGQKIKVVVDSADKIMRTIDFKPAE 716 >UniRef50_A0M6K9 Ribonuclease R n=16 Tax=Bacteroidetes RepID=A0M6K9_GRAFK Length = 732 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 218/725 (30%), Positives = 358/725 (49%), Gaps = 27/725 (3%) Query: 24 ILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I++ L K + ++A L + + ++L + ++ R + + Sbjct: 19 IIDILRNNSGKTYNYKQIASILGVNDASSRNQIIKKLAQLAAKQEIEEVERGKFKIESNK 78 Query: 83 DLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIV 142 + G + GYG++ VE DD++++++ + T GD V R+ R E I Sbjct: 79 NYYTGVLDLTTKGYGYVMVEEFADDIFIANKDLNTAFDGDTVEIYVFNRRRRKRSEGEIT 138 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 +++ K ++ VG + GFVV DD + D IP +++ GA G VVVE + P + Sbjct: 139 KIIKRKRTEFVGTLQQKKDFGFVVIDDKSMHTDFFIPGNKLNGAENGDKVVVEFEEWPKK 198 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 +GKI VLG + L + +P+ +P+ VE+ + + +E + R D Sbjct: 199 ADSPLGKITRVLGTPGEHHTEIHSILAQYGLPHDFPEEVEEFANKIDTSINKEEISKRRD 258 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 +RD+ TID +DA+DFDDA+ EK + G + + + IADVS+Y++P T LD EA R TS Sbjct: 259 MRDVLTFTIDPKDAKDFDDALSFEKLKNGNYEIGIHIADVSHYLQPGTILDEEAYERATS 318 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +V+PMLPE+LSN CSL P+ ++ + + F V S R Sbjct: 319 VYLVDRVVPMLPEILSNNACSLRPKEEKFTFSAVFEIDDNATVKNQWFGRTVTYSDERFA 378 Query: 383 YTKVWHILQGDQDLREQY-----------APLVKHLEELHNLYKVLDKAREERGGISFES 431 Y + HIL+ L++ + L+ L K + R + G ISF+ Sbjct: 379 YEEAQHILETGTGTIPDDVSIRNHAYSVRGALIEAVVTLNTLAKKMRTRRMKDGAISFDK 438 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA--KEPALFRIHDKP 489 E KF N + + DA+KLIEE M+LAN A ++ K K+ ++R HD+P Sbjct: 439 VEVKFNLNEDNNPVGVFFKTAKDANKLIEEFMLLANRKVAEYIGKQSPKKTFVYRNHDEP 498 Query: 490 STEAITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 + + S ++++ G +L + +LLE V R + M+ T+ +R+M +A Y Sbjct: 499 DDQKLASLQTIVGRFGHKLNLKDRSSTTSSLNKLLEDVQGRKEQNMVDTLAIRTMSKAYY 558 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 E+ GH+GLA Y HFTSPIRRYPD+ +HR +++ L + S EE Sbjct: 559 GTESIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDGAKSA------------SEEE 606 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 H S E A A RD +++ FM D F GVIS VT +G FV + + Sbjct: 607 YETKCHHSSEMENLATNAERDSIKYMQVKFMQDHENEEFLGVISGVTEWGIFVEIVENKC 666 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +G++ + +++D+Y F+ ++G+ +GQTY LGD V V+V+ ++ +R +DF+L+ + Sbjct: 667 EGMIRLRDMNDDHYEFNADEFSVVGKRTGQTYTLGDEVYVKVKNADLIKRHLDFTLLGNR 726 Query: 729 RAPRN 733 Sbjct: 727 EEVET 731 >UniRef50_A6ED44 Exoribonuclease II n=2 Tax=cellular organisms RepID=A6ED44_9SPHI Length = 709 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 210/712 (29%), Positives = 364/712 (51%), Gaps = 26/712 (3%) Query: 22 EFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I + L K + + +++ +L+I + E + L+ + G V ++ + L + Sbjct: 15 QLISDVLEKSNNEALNYKQVSAKLNITDPDSRETILDILKQQTQKGVFVEAQKGKFKLKD 74 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + G V DG F+ + + D+++S+ ++ +HGD+V + E Sbjct: 75 LKTFIIGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEG 134 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +V ++ + +G FV+ DD ++ DI +P + GA+ V V++T Sbjct: 135 EVVEIIERAKTDFIGVIKISDRFAFVIADDKKMMQDIFVPLSDLNGAKNRQKVQVKITDW 194 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P +G ++ +LG+ ++ L + P +P VE++ + E++ + Sbjct: 195 PEGVKNPIGTVITILGEQGENNTEMNAILAQYGFPLQFPPEVEKEANAIPEQITADEIKD 254 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R+ TID DA+DFDDA+ +K G + + V IADV++YV P++ LD+EA R Sbjct: 255 RRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNSALDKEAYGR 314 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY +VIPMLPE LSNG+CSL P D+LC + +K + F V+ S Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFELDNKANIINEWFGRTVIHSDR 374 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R +Y + ++ + + + +L+ L +L + + G ISFES E KF + Sbjct: 375 RFSYEEAQEVI------ENKTGDFSEEILKLNELAYILRDKKFKNGAISFESTEVKFKLD 428 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAI 494 + + + +R DAHKLIE+ M+LAN A F+ K + ++R HD P+ E + Sbjct: 429 EDGKPLGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRSHDSPNLENL 488 Query: 495 TSFRSVLAELGLELPGGNKPEP-RDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 +F A G ++ + + + L+E V + + +L + +RSM +A+Y + Sbjct: 489 GNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAVYTTKKT 548 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H+GLA Y HFTSPIRRYPD+ +HR + L KE+ EE Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNKEKSA------------DAEEYEIAA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S E+RA +A R + + +++ + +GN++KG+IS VT +G +V L D +G++ Sbjct: 597 SHSSTMEKRAADAERASIKYKQAEYLEENIGNLYKGIISGVTEWGMYVELADNKCEGMIR 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + L +D+Y D+ ++G+ +TY+LGD V+V+V+ V++ +R+IDFSLI Sbjct: 657 LRDLSDDFYVLDEKNYCIIGQRKKKTYQLGDEVQVKVKKVDLSKRQIDFSLI 708 >UniRef50_Q0B076 RNAse R n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B076_SYNWW Length = 705 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 264/713 (37%), Positives = 403/713 (56%), Gaps = 14/713 (1%) Query: 20 SREFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 +R+ IL+ + K KP S EL I+ ++ + + +E++G++V TR + L Sbjct: 3 NRDSILDCMHKESYKPLSYHELKAVFGIKDVDEDIKFSKIVGKLEKEGEIVKTRAGKFGL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-R 136 PE ++LVKG + + G+G L + ++++ +++ +H D+V+ + G R Sbjct: 63 PEMMNLVKGIIHISKKGFGVLVPDKAGLGEVFVYGKKLNGAMHNDRVMVRIQEKGYNGQR 122 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E ++R+L T ++VG + + VVPDDSR + I + + A+ G V+V + Sbjct: 123 PEGTVIRILARNTRELVGTFTKGRHLLQVVPDDSRQIYPIYVKASRKWKAKEGDKVLVRI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + P R A GKIVEVLG G+ + + + H + +P V ++ + EV E Sbjct: 183 SSWPERDKVAEGKIVEVLGRKGEAGVDLKVLAKKHGLRLEFPDNVMEEARNVAVEVNAEE 242 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 + R DLR+ +VTIDGEDA+D DDAV EK G ++L V IADVS+YV+ LDREA Sbjct: 243 ISRRRDLREWRMVTIDGEDAKDLDDAVSIEKTSKG-YKLGVHIADVSHYVKEDCKLDREA 301 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTSVY +V+PMLP LSN +CSLNPQV+RL + C M + S G++ Y+ ++V+ Sbjct: 302 FKRGTSVYLIDKVLPMLPVELSNNICSLNPQVERLAISCIMDIDSWGQVVDYEIVKSVIQ 361 Query: 377 SHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 + R+TY+ V IL + L+E+Y LV+ + L +L ++R RG + F+ E+K Sbjct: 362 INERMTYSDVNRILADNPPALKERYGELVEDFFLMKELSDILRRSRLNRGMLDFDFPESK 421 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I + E +++ +R LIE+ MI AN A + P L+R+H+KP EAI+ Sbjct: 422 VIVDEEGFPLEVKRAERGPGEMLIEDFMIKANEVVAEHLHNLGLPVLYRVHEKPDEEAIS 481 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 VLA G ++ G+K P + +L + +P+ +M+ M+LRSMK A Y PE RGH Sbjct: 482 ELNKVLAVFGHKIK-GHKVSPMLFQGILADIKGQPEEQMISLMILRSMKHASYLPEPRGH 540 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA Y HFTSPIRRYPDL +HR + LL T ++M G+ Sbjct: 541 FGLASPYYCHFTSPIRRYPDLIVHRVLSSLLDGG-------MTTRKKSSLEKKMTIYGEQ 593 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S+ E +A+EA R++ D K +M VG+ F ISSV FGFFV L++ ++GLVH+S Sbjct: 594 SSLQEMKAEEAERELLDVKKAQYMSQFVGDEFSARISSVQAFGFFVALENT-VEGLVHIS 652 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 S+ +DYY F L G SG+ + +GD+V V++ V++DE KIDF L+ E Sbjct: 653 SIADDYYLFSDRTYTLRGRHSGRKFAIGDQVRVQLVRVDVDEGKIDFELLQDE 705 >UniRef50_A8RRW9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RRW9_9CLOT Length = 748 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 259/744 (34%), Positives = 384/744 (51%), Gaps = 46/744 (6%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTV 89 K P ELA+ L I Q + L + L + +G++ +++ Y PE V G Sbjct: 20 KSYVPMKAKELAMLLGIPKS-QRDELTQVLDYLVSEGRIGISKKGKYGKPEVFS-VNGIF 77 Query: 90 IGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--RREARIVRVLVP 147 GH G+GF+ VEG + D+++ ++ +HGD+V DR G R E +++VL Sbjct: 78 CGHPKGFGFVTVEGMEQDVFIPEDRTGAALHGDRVQIVVESQDRGGGRRAEGSVLKVLEH 137 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 ++VG Y G GFV+PD+ ++S DI IP MGA G VV + + K Sbjct: 138 ANKEVVGYYQKSKGFGFVIPDNQKISKDIFIPQGCDMGAVTGHKVVARIKEFGDANHKPE 197 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE------------ 255 G + E+LG G + +R + +P +P V +V G +EV Sbjct: 198 GVVTEILGHVNDPGTDILSIVRAYGLPEEFPPEVMDEVEGCPDEVAVPGMTRDEETWDGP 257 Query: 256 --------------AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 AGR+DLR L VTIDGEDA+D DDAV + GG+ L V IAD Sbjct: 258 YGIGDLTSPADWTGDLAGRLDLRGLRTVTIDGEDAKDLDDAVTLCRNGQGGYILGVHIAD 317 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YV+ PLD+EA RGTSVY +VIPMLP LSNG+CSLN DRL + C M + Sbjct: 318 VSHYVKEGRPLDKEALKRGTSVYLVDRVIPMLPHKLSNGICSLNAGTDRLALSCIMELDD 377 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +G + +K E V+ R+TYT V I+ GD+ + +Y V + + +L + Sbjct: 378 QGNVLDHKIAETVIHVDRRMTYTAVNAIVTDGDEAVMAEYEGFVPMFMLMKEVSDILREK 437 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R++RG I F+ E+K I +A+ + I+ +RN A K+IE+ M+ AN + A P Sbjct: 438 RKKRGAIDFDFPESKIILDAQGKPLEIKPYERNAATKIIEDFMLAANETVAEDYFWQSLP 497 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTML 539 L+R HD P E + + + G + + P++ +LL+ + P+ +L + Sbjct: 498 FLYRTHDNPDPEKMKQLGTFIHNFGYFIRLQQGEIHPKELQKLLDKIEGTPEEVLLSRLT 557 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LRSMKQA Y GHFGLA + Y HFTSPIRRYPDL +HR IK L G + Sbjct: 558 LRSMKQAKYTTLCSGHFGLAARYYTHFTSPIRRYPDLQIHRIIKESLKGGLGDKRAG--- 614 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + + + S ERRA+EA R+ KC++M +G F GV+S VT +G Sbjct: 615 ----HYEAILPGVAMQTSALERRAEEAERETDKLKKCEYMSRFIGQEFDGVVSGVTNWGL 670 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 +V L + ++GLV +S L +DYY FD+ L+GE + +T++LG + V+V + + R Sbjct: 671 YVELPNT-VEGLVRISELRDDYYIFDEQHYELVGEMTRKTFKLGQPIRVQVASTDRLLRT 729 Query: 720 IDFSLISSERAPRNVGKTAREKAK 743 +DF L PR+ ++A + A Sbjct: 730 VDFIL------PRDWDRSAGKGAS 747 >UniRef50_C6XUJ2 Ribonuclease R n=8 Tax=Bacteroidetes RepID=C6XUJ2_PEDHD Length = 709 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 214/712 (30%), Positives = 358/712 (50%), Gaps = 26/712 (3%) Query: 22 EFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I + L K K + +++ +L++ + E + L+ R G + + L + Sbjct: 15 QLISDVLEKSNKEALNYKQVSAKLNLTDADSRETISEILKEQARKGVFSEPEKGKFRLKD 74 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGR-KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + G V DG F+ + + D+++S+ ++ +HGD+V + E Sbjct: 75 LKTFITGKVDMTADGAAFIIPDDEFEKDVFVSARKLHNALHGDKVKVYIYAKKSGRKNEG 134 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +V ++ + +G FV DD ++ DI +P + + GA+ G V V +T+ Sbjct: 135 EVVEIIERSKTDFIGVIRISERYAFVNVDDRKMLHDIFVPLNDLNGAKNGQKVQVSITEW 194 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P +GKI+ +LG+ ++ L + P +P VE + + E+V G Sbjct: 195 PEGVKNPIGKIINILGEQGENNTEMNAILAQYGFPLSFPAEVELEANAIPEQVSAAEIKG 254 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R+ TID DA+DFDDA+ + G + + V IADVS+YV+P++ LD+EA R Sbjct: 255 RKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYAR 314 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY +VIPMLPE LSNG+CSL P D+LC + K L F V+ S Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFELDEKANLVNEWFGRTVIHSDR 374 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R +Y + ++ + + +L+ L +L + + G ISFES E KF + Sbjct: 375 RFSYEEAQEVI------ENKAGDYAAEILKLNELAYILRDKKFKNGAISFESTEVKFKLD 428 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAI 494 + + +R DAHKLIE+ M+LAN A F+ K + ++R HD P+ E + Sbjct: 429 ETGKPIGVYVKERKDAHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYRSHDSPNLENL 488 Query: 495 TSFRSVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 +F A G ++ +K + L+E V + + +L + +RSM +AIY + Sbjct: 489 GNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAIYTTKKT 548 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 H+GLA Y HFTSPIRRYPD+ +HR + L E+ + EE Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVHRLLAAYLNNEKSA------------NEEEYEIAA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H S E+RA +A R + + +++ + VGN+F G+IS VT +G +V L + +G++ Sbjct: 597 SHSSAMEKRAADAERASIKYKQAEYLEENVGNIFAGIISGVTEWGMYVELTENKCEGMIR 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + + +D+Y D+ ++G+ + Y+LGD V+V+V+ V++ +R+IDF+LI Sbjct: 657 LRDITDDFYVLDEKNYCIVGQRKQKKYQLGDEVQVKVKKVDLAKRQIDFTLI 708 >UniRef50_Q11XW5 Exoribonuclease II n=4 Tax=cellular organisms RepID=Q11XW5_CYTH3 Length = 750 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 237/740 (32%), Positives = 371/740 (50%), Gaps = 36/740 (4%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER---LDLV 85 R+ P S EL +LH+ ++ + L+ L + R+G L + Y+ LV Sbjct: 29 NSRKNPFSYKELIKKLHLVRDKDKKALKDVLEDLVREGILAKDKSGLYSNAGSSGGESLV 88 Query: 86 KGTVIGHRDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-----E 138 G V + ++ EG K +D+++SS +M + GD V G + E Sbjct: 89 TGRVDFVNARFAYVIPEGEKADNDIWISSNKMSGALDGDIVRVAVYKKSGGGNKGTKSAE 148 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 IV ++ K + VGR A FVVPD ++ DI IP + I GA+ G V+V++T Sbjct: 149 GEIVEIVERKRTSFVGRIEVSARHAFVVPDGRKMHVDIFIPKEHINGAKTGEKVLVDITA 208 Query: 199 RPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 PTR K GK+ EVLG + L +PY +P V + + E E Sbjct: 209 WPTRDEKSPTGKVTEVLGMAGENETEMHAILAEFGLPYEFPNQVIKAAQDITAETSEAEI 268 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R D+R TID EDA+DFDDA+ + G W + V IADVS+YV+P LD+EA Sbjct: 269 KKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGDTLDKEAY 328 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 R TSVY + +PMLPE LSN LCSL P D+L + + ++ F ++ S Sbjct: 329 RRATSVYLVDRCVPMLPERLSNELCSLRPNEDKLTFSAIFEIDADAKVLDEWFGRTIIHS 388 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 R +Y + ++ Q LVK L L+ L K + R + G ISFE+ E KF Sbjct: 389 TRRFSYEQAQEVI------ETQQGDLVKELTILNTLAKKMRAQRFKEGAISFETVEVKFQ 442 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE------PALFRIHDKPST 491 +A+ + + R DAHKLIEE M+LAN A FV ++ ++R HD P+ Sbjct: 443 LDAKGKPLAVVPKVRKDAHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYRTHDAPNP 502 Query: 492 EAITSFRSVLAELGLELPGGNKPEP-RDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 E + S + G ++ ++ ++ +L + V +P+ +LQ++ +R+M +AIY Sbjct: 503 EKLASLATFAKRFGHKVELDDENAIAKNLNKLSDEVEGKPEQNVLQSLAIRTMSKAIYSI 562 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 E HFGLA + Y+HFTSPIRRYPD+ HR +++ L + E + Sbjct: 563 EPDMHFGLAFKHYSHFTSPIRRYPDVMAHRLLQHYLDGGKSA------------DKEYYI 610 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + +H S E+ A EA R + + +FM +G F+G++S VT FG FV + + +G Sbjct: 611 EACEHSSAQEKLAAEAERSSIKFKQVEFMQSSIGKEFEGIVSGVTEFGMFVEIVETKCEG 670 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +V ++ +D+D+Y D R++G+ + + LGD V+V V++ N++ R ID L+ + Sbjct: 671 MVRLADMDDDFYEVDTDNYRIVGKRNKRMITLGDSVQVIVKSTNLERRTIDLELVKNSDG 730 Query: 731 PRNVGKTAREKAKKGDAGKK 750 R+V + A + + K+ Sbjct: 731 NRDVNRDALDFSDARKPSKR 750 >UniRef50_D0J279 Ribonuclease R n=2 Tax=Comamonas testosteroni RepID=D0J279_COMTE Length = 882 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 318/772 (41%), Positives = 446/772 (57%), Gaps = 41/772 (5%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 + + + + + GTV GHRDG+GF+ + + D+YL +M+ +H D+V + Sbjct: 3 IKKMNPRAKVADMNEEILGTVQGHRDGHGFVVRDDGERDIYLPPNEMRAVLHKDKVQVRI 62 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 D +GR E R+V ++ I+GR+ E+GV V P+D R D+LIP + A+ Sbjct: 63 ARHDHRGRPEGRVVEIVERPDQPIIGRFLQESGVWLVAPEDKRYGQDVLIPSNATGAAKP 122 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 G VVVVELT+ P + VG+I EVLG+ GM ++IA+R + +P+I+ A +Q L Sbjct: 123 GQVVVVELTEAPALFGQPVGRITEVLGEVDDPGMEIEIAVRKYGVPHIFSDACLEQAKAL 182 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG---WRLWVAIADVSYY 305 E+V R+DL D+PLVTIDGEDARDFDDAVYCE + G WRL VAIADVS+Y Sbjct: 183 PEKVRPADYKHRIDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVSHY 242 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V + +D +A +R TSVYFP +VIPMLPE LSNGLCSLNP VDRLCMVC+M ++++G + Sbjct: 243 VTTGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLITAQGEI 302 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKAREER 424 Y+FY AVM SHAR TYT+V IL + + V+ L L+ +++ L KARE R Sbjct: 303 HAYQFYPAVMHSHARFTYTEVAAILANTRGPEAAKRKERVQDLLNLYGVFQSLLKAREAR 362 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G + FE+ E + + + RIE+I RNDAHKLIEE M+ AN+ +A F++++ + LFR Sbjct: 363 GAVDFETTETQIVCDDNGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIDQSGQLGLFR 422 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 +HDKPS E R+ L +G+ + P +++ ++ + DRPD++ + TMLLRSM Sbjct: 423 VHDKPSLEKQEILRNYLKAMGVSMSISENPSTKEFQQIANATKDRPDSQQIHTMLLRSMM 482 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 QA Y PE GHFGLA ++Y HFTSPIRRYPDL +HR IK L + G Sbjct: 483 QAFYTPEGSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAELNGTHYKLPSLPTPGEAEA 542 Query: 605 SMEE------------------------MLQLGQHCSMAERRADEATRDVADWLKCDFML 640 M + G HCS ERRADEA+RDV WLKC +M Sbjct: 543 KMAKRLSSRVVEPGQKPRKRSAAKEFQAWEAAGLHCSANERRADEASRDVEAWLKCKYMR 602 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTY 700 + +G F G +SSVT FG FV LD ++++GLVH++ L DY+RFD+ Q L GE SG Y Sbjct: 603 EHLGEEFAGTVSSVTTFGVFVTLDAMYVEGLVHITELGGDYFRFDEARQELRGERSGVRY 662 Query: 701 RLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKK 760 +G RV V+V V++D R+IDF L+ G + +G A +G RR+ Sbjct: 663 GIGARVRVQVSRVDLDGRRIDFRLVRDGED----GLVQTPRGGRGQAKDEGRGRRE---- 714 Query: 761 VNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812 R K +++DA+ + A+A + RA + + A Sbjct: 715 -----SRDERSAGGYADKWSRRDAKANRAQRNAAAGPASAPEPDRAKQGRKA 761 >UniRef50_A9KPF2 Ribonuclease R n=12 Tax=Clostridiales RepID=A9KPF2_CLOPH Length = 716 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 239/718 (33%), Positives = 394/718 (54%), Gaps = 16/718 (2%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E +L+ +T +P EL+ L + ++ + L+ + ++ DG+++ Y Sbjct: 10 KELLLQVITDRSYRPMKFRELSSLLQVPK-DERDDLKIVMDSLISDGKIMLDGNGRYKE- 67 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK--DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 ++ G G G+GF+++EG + +D+++ + K ++ D+V RR Sbjct: 68 TNGNIKTGIFSGTTRGFGFVKIEGEENEEDIFIPESETKGALNKDRVQIAIFEEQSGRRR 127 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 E ++ +L +++VG + GFV+ D+++ + D+ IP + GA G V+V+LT Sbjct: 128 EGAVISILERNVTELVGTFQKSKNFGFVIADNTKFNSDVFIPKEHTKGAVNGHKVLVQLT 187 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + GKI++++G G+ V + + +P +P V +QV + EEV Sbjct: 188 DYGSETKNPEGKIIKIIGHINDPGVDVVSVILENGLPTEFPDEVMKQVERIGEEVSSADI 247 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GRVDLR+L VTIDGEDA+D DDA+ K +G ++L V IADVS YV +PLD+EA Sbjct: 248 GGRVDLRNLQTVTIDGEDAKDLDDAITLSK-KGDIYQLGVHIADVSNYVTEDSPLDKEAL 306 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY +VIPMLP LSNG+CSLN DRL + C M + KG + G++ E V++ Sbjct: 307 KRGTSVYLVDRVIPMLPHKLSNGICSLNAGSDRLALSCMMEIDEKGNVVGHRIAETVINV 366 Query: 378 HARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 R+TYT V I++ + E+Y LV E + L +L + R +RG I F+ E+K Sbjct: 367 DRRMTYTSVKKIIEDHDEAEIEEYKELVPMFELMLELADILREKRRKRGSIDFDFPESKI 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 I +++ R I+ +RN A K+IE+ M++AN + A + P ++R H+ P E I Sbjct: 427 ILDSDGRPTDIKPYERNKATKIIEDFMLIANETVAEDFFWQELPFVYRTHENPDLEKIQK 486 Query: 497 FRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + G + G ++ P++ +LL + +P+ ++ + LRSMKQA Y GH Sbjct: 487 LSVFINNFGYTMRIGQDEIHPKELQKLLIKIDGKPEEALISRLTLRSMKQAKYTTTCDGH 546 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGL+ + Y+HFTSPIRRYPDL +HR IK L + ++ + ++ + Sbjct: 547 FGLSTKYYSHFTSPIRRYPDLQIHRIIKENLRGG-------LKEKRINHYESILNEVARQ 599 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 S+AERRADE+ R+V K ++M +G F+GVIS VT +G +V L + ++G++ ++ Sbjct: 600 SSLAERRADESEREVEKLKKVEYMSQFIGQTFEGVISGVTSWGMYVELPNT-VEGMIRLA 658 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 + +DYY +D+ L GE + + Y+LG+ V +RVE + R I+FS++ Sbjct: 659 DMHDDYYIYDEEHYLLTGEHTKKIYKLGEAVVIRVEDTDKLMRTINFSIVGRANRIEE 716 >UniRef50_C7M940 Ribonuclease R n=6 Tax=Flavobacteria RepID=C7M940_CAPOD Length = 742 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 217/740 (29%), Positives = 354/740 (47%), Gaps = 33/740 (4%) Query: 8 EREAEKYANPIPSREFILEHL----TKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 + + K +E I E+ + ++A +LHI + + L ++L ++ Sbjct: 15 KPKKNKSLAKRNKQELIKAIFSVLQEHPEESFNYKQIAAKLHITDAPRRDMLVKQLVQLK 74 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 ++V R Y GT+ G G++ V+G +D++++ + +HGD Sbjct: 75 EKKRIVEIDRGKYQAIPMQHYYVGTLDVSARGNGYVIVDGLDNDIFVAQNFLNKALHGDL 134 Query: 124 VLAQPLGADR-KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 V R + + E I +VL + VG FVVP D+R+ D + D+ Sbjct: 135 VEVYVFPRFRNRNKMEGEISKVLERNKVRFVGTVQMHKNFAFVVPTDARMYTDFFVLKDK 194 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + GA+ G V+V + + +G + ++LG + L + +PY +P+ VE Sbjct: 195 LNGAQDGDRVIVRIEDWKDKSDSPMGVVEQILGKPGEQTTEMHSILAEYGLPYTYPEEVE 254 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 L + +E A R D+R+ TID DA+DFDDA+ + G + + V IADV Sbjct: 255 AFAKKLDLSITDEEIARRRDMRENLTFTIDPRDAKDFDDALSFKLLENGNYEIGVHIADV 314 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+ T LD EA NR TSVY +V+PMLPEVL N CSL P D+ ++ K Sbjct: 315 SHYVKEGTILDEEAYNRATSVYLVDRVVPMLPEVLCNFACSLRPDEDKYTFSAVFEMNKK 374 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ---------------DLREQYAPLVKHL 407 + V S R Y + +++ + R A +V+ + Sbjct: 375 AEVVDIWIGRTVTHSSFRFAYEEAQSVIEQAKVGEGYTIPAETSITDKERAIPAEVVEAI 434 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 L+ L + L + R G I+F+ E KF + + + +A+KLIEE M+LAN Sbjct: 435 LTLNTLAEKLRRKRMRLGAITFDKVEVKFDLDENGNPTGVYFKESKEANKLIEEFMLLAN 494 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRD-YAELLESV 526 A +V K K+ ++R+HD+P + + F +V++ G L N+ D LLE V Sbjct: 495 RKVAEYVAKMKKTFVYRVHDEPDADKLQQFNAVISRFGYSLNLNNRQTTTDSLNNLLEEV 554 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 + + ++ T+ +RSM +A Y +N GH+GLA + Y HFTSPIRRYPD+ +HR ++ L Sbjct: 555 KGKKEQNLVDTLAIRSMAKATYTTKNIGHYGLAFEYYTHFTSPIRRYPDVMVHRLLQLYL 614 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 E +H S E A A RD +++ +M Sbjct: 615 DNAPSQP------------EAEYETKCKHSSQMESLAASAERDSIKYMQVKYMEAHKNQQ 662 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F GVIS VT +G +V + +GLV + +DYY FD+ L+G+++G+TY+LGD V Sbjct: 663 FAGVISGVTEWGIYVEITVNKCEGLVRARDIKDDYYTFDEQQYALVGQATGKTYQLGDEV 722 Query: 707 EVRVEAVNMDERKIDFSLIS 726 +RV+ ++ ++++DF LI Sbjct: 723 MIRVKNTDLMKKQLDFELID 742 >UniRef50_C6JGM3 Ribonuclease R n=2 Tax=Clostridiales RepID=C6JGM3_9FIRM Length = 755 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 257/752 (34%), Positives = 403/752 (53%), Gaps = 54/752 (7%) Query: 21 REFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++FILE + +P E++ L + EE+ E L L + +G++ R+ Y Sbjct: 5 KKFILELMGDPIYQPMRLREISSLLRLSKEEKRE-LYDVLDELCEEGKVSVDRKGRYEKV 63 Query: 80 ERLDL-----------------------------------------VKGTVIGHRDGYGF 98 + +GT IGH G+GF Sbjct: 64 KGKWKKKKDDRYYDDRREEYGSEYGRKKKDKNKKDKNKKEQPEGIQAEGTFIGHPKGFGF 123 Query: 99 LRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RREARIVRVLVPKTSQIVGRYF 157 + +EG+ +D+++ T +H D+V ++G R+E +V+VL +IVG Y Sbjct: 124 VEIEGQDEDIFIPESDTGTAMHQDKVRIIIRNDKKEGKRQEGVVVKVLERGMPEIVGTYQ 183 Query: 158 TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDN 217 GFV+ D+ + S DI IP + G + G V+V +T + GKI E LG+ Sbjct: 184 LNRDFGFVISDNPKFSKDIFIPRKEAAGIKNGDKVIVVITDYGSGNKNPEGKIKENLGNI 243 Query: 218 MGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 G + +++ IP +P+ V +Q + + V + + GR+DLR L VTIDGEDA+ Sbjct: 244 RTPGTDILAIVKSFGIPSEFPEKVMKQAQRVPDHVLDADRDGRLDLRHLQTVTIDGEDAK 303 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA+ K G + L V IADVS YV+ ++ LDREA RGTSVY +V+PMLPE L Sbjct: 304 DLDDAISLTK-EGDIYHLGVHIADVSNYVQYNSALDREALKRGTSVYLADRVVPMLPERL 362 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDL 396 SNG+CSLN DRL + C M ++ KG++ ++ E V++ + R+ YT V +IL+ D++ Sbjct: 363 SNGICSLNQGEDRLALSCLMDINEKGKVVSHQIAETVINVNERMCYTDVKNILEDTDEEA 422 Query: 397 REQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAH 456 +++Y L+ + L +L +R RG I F+ E+K I NA + ++ + N A Sbjct: 423 KKRYEALIPMFFMMKELSGILRNSRHHRGSIDFDFPESKIILNAAGKAIDVKPYEANVAT 482 Query: 457 KLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL-PGGNKPE 515 K+IE+ M++AN + A+ + P ++R HD P E + S ++L G+++ + Sbjct: 483 KIIEDFMLMANETVAQEYCTEEIPFVYRTHDNPDPEKVESLLTLLHNQGVKIQKAKEEIT 542 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 P++ +++ES+ P+ M+ ++LRSMKQA Y E GHFGLA + Y HFTSPIRRYPD Sbjct: 543 PKEIQQIIESIEGLPNEAMISRLVLRSMKQAKYTTECSGHFGLAAKYYCHFTSPIRRYPD 602 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 L +HR IK L G + E + ++ + S+ ERRADEA R+ K Sbjct: 603 LQIHRIIKDNLRG------RLMREGRTEHYAEILDEVARQSSVCERRADEAERESDKLKK 656 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 ++M +G F+G+IS VTG+G +V L + ++GLVHV++L +DYY FDQ L GE Sbjct: 657 AEYMSYHLGEEFEGIISGVTGWGLYVELPNT-VEGLVHVNTLRDDYYIFDQETYELRGEM 715 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + + Y+LGD+V VRV + + +DF L++ Sbjct: 716 TKKVYKLGDKVCVRVADADKMLKTVDFELVAD 747 >UniRef50_P57628 Ribonuclease R n=4 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=RNR_BUCAI Length = 731 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 386/730 (52%), Positives = 508/730 (69%), Gaps = 3/730 (0%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M DP+Q+REA++Y NPIPSRE+I L + S+ L + I +E + LRRRLR Sbjct: 1 MVVDPYQKREAKRYKNPIPSREYISSCLRTSQDLISQKNLEKKFGINNQESKKALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQ+++T +CY PE L +VKG VIGHRDGYGFLR E K+DL+LSSEQMK+CIH Sbjct: 61 AMERDGQVIYTSNRCYVAPESLKIVKGKVIGHRDGYGFLRTETLKEDLWLSSEQMKSCIH 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD +LA + K R AR +++L P IVGRY+ + + FV+PDD+R +F I I Sbjct: 121 GDIILAHIVETHGKRRSSARFLKLLQPNNILIVGRYYIDDKIKFVIPDDTRFNFKIFIFS 180 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 +G +V V+L Q P R ++ G IVE+LG MGT +A++IALRTH IP +W + Sbjct: 181 AIKDDISIGSIVSVKLKQHPIRNSRVQGFIVEILGKEMGTNLAIEIALRTHLIPSLWSKE 240 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEK--KRGGGWRLWVA 298 V++QV + ++ + R DLR P TID EDARDFDDAV+C++ GW LWVA Sbjct: 241 VKKQVYEISRKINQYDFKNRTDLRHFPFFTIDDEDARDFDDAVFCKRKANPEEGWILWVA 300 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV+P+TPLD+ A RGTSVYFPS VIPMLPE +S LCSL P V+RLC++CEM+ Sbjct: 301 IADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMS 360 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 +S +G L YK YE ++ SH R TY +++ I GD LR +Y +K +E L L + + Sbjct: 361 LSKQGELISYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFN 420 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K + GI FE+ E KF+ ++ RI+ I Q RNDAHK IE CMILAN+++ARFVEK K Sbjct: 421 KDNISKKGIYFENIEPKFVLDSNLRIKSIYQNIRNDAHKFIESCMILANVASARFVEKYK 480 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 P LFR HD+P + + S R L ELG L GG+ PE Y+ LL++V+DRP+ EM+QT+ Sbjct: 481 YPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEYEMIQTV 540 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG-HQGNTT 597 LLRSM QA+Y P+NRGHFGL+L SY HFTSPIRRYPDL LHR IKYLL K++ + N Sbjct: 541 LLRSMTQAVYSPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLFKDKNTSKSNYN 600 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 + YS E+ ++G HCS+ ERRADEA RDV DWLKCDFM ++G + GVIS+VT F Sbjct: 601 FYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIGCILNGVISNVTTF 660 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 GFFVRL+ FIDGLVH++SL++DYY FD +G +L+G+S+ TY LGD ++V+V +VN++E Sbjct: 661 GFFVRLNQFFIDGLVHINSLNDDYYYFDSLGLKLIGKSTKNTYCLGDALKVKVISVNLNE 720 Query: 718 RKIDFSLISS 727 +KI+ SL S Sbjct: 721 KKIELSLYKS 730 >UniRef50_Q9WZI1 Ribonuclease R n=12 Tax=Thermotogaceae RepID=RNR_THEMA Length = 710 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 251/708 (35%), Positives = 387/708 (54%), Gaps = 14/708 (1%) Query: 27 HLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVK 86 L+ KP EL + + EQ + +R ++ +E++G++ R Y DL Sbjct: 13 ILSDDYKPMVLKELYKKFRAKTREQRKKVREVVKKLEKEGRIFRDSRGRYRKLG-EDLKV 71 Query: 87 GTVIGHRDGY-GFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVL 145 GT+ R GY F+ + ++ + + E K +H D+V+ + G R G R+VRVL Sbjct: 72 GTIEFTRSGYVAFVITDDFEE-IAVPVEDTKYAMHKDRVVVEITGTWR-GLPRGRVVRVL 129 Query: 146 VPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK 205 ++VG + + GFVVPDD ++++D + P+ I GA+ V+ E+ + P+ Sbjct: 130 ERGLKRVVGVFDHKGTFGFVVPDDPKIAYDFYVAPENIDGAKPNQKVIAEILKYPSPGKN 189 Query: 206 AVGKIVEVLGDNMGTGMAVDIALRTHEIPY--IWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 K+V+VLGD + + + H++P +P+ V ++ + V ++ GR DL Sbjct: 190 PEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREANAIPARVRKKDLVGRKDL 249 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 RD +VTIDGEDA+DFDDA+ EK G + L V IADVS+YV+ + LD+EA RGTSV Sbjct: 250 RDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSV 309 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y VIPMLP LSNG+CSL DRL M EM + GR+ Y Y +V+ S R+ Y Sbjct: 310 YLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIY 369 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI-SFESEEAKFIFNAER 442 +V L+ D ++Y P + L ++L +AR +RG I ES+E K I + Sbjct: 370 ERVNEFLE-DPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDEVKVILDENG 428 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 ++ I +R A KLIEE MI AN + A + A P ++R+H++P E I ++ L Sbjct: 429 QVVDIVPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDPETIFQLKNYLE 488 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 +G+ +K P +LLE V D P ++ +L+RSMK+A+Y N GHFGLA + Sbjct: 489 AMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAVNIGHFGLASYA 548 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPDL +HR +K L + E + + ++ +HCS ER Sbjct: 549 YTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPEQIEKFS-----KVLPKIAKHCSRRERV 603 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 ADEA D+ K +++ +G VF V++++T FG FV + + I GLVH+S+L +DYY Sbjct: 604 ADEAEWDLVAMKKVEYIARHIGEVFNVVVTNITKFGLFVEIPEKSISGLVHISTL-DDYY 662 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +D+ L+G+ G+ +RLGD ++ +V + +IDF L+ + Sbjct: 663 YYDETRNMLIGKRKGKVFRLGDVLKAKVVRADKIRGEIDFVLVEEDEE 710 >UniRef50_C3RM44 Ribonuclease R n=4 Tax=Bacteria RepID=C3RM44_9MOLU Length = 756 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 244/717 (34%), Positives = 393/717 (54%), Gaps = 12/717 (1%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E ILE L+ S D +A +L+ ++ L + + +E +G++V + Y LP Sbjct: 2 KEKILELLSDENYLERSIDLIAAKLNCNKSDKFVNLVKLMNELEDEGKVVRNKYNHYYLP 61 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + ++ GT+ ++ G+GF+ VE ++ D+++S + +K + D VL + + R E Sbjct: 62 NQFGMILGTLTINKRGFGFVVVEDQEKDIFISPDDLKDAFNKDTVLVELKKHSDEERPEG 121 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 R++RV+ +++VG FV DD I + + GA G V VE+ Sbjct: 122 RVIRVIKRGQTRLVGEIKKGKRDCFVDVDDPMFDKPIFVDRAHLHGAMPGHKVQVEIKTY 181 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + G +V++LG G+ + + H+ P +PQAV Q+ + + + Sbjct: 182 ---KPILKGDVVKILGHRNDPGIDILSIVYEHDAPVEFPQAVYDQIENIPDSLEGIDIGQ 238 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R+DLRD +VTIDG+DA+D DD + +K G + L V IADVSYYV +PLD+EA R Sbjct: 239 RIDLRDEVVVTIDGDDAKDLDDGISLKKLDNGHYHLGVHIADVSYYVTEESPLDKEAFAR 298 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTS+Y +VIPMLP LSNG+CSLNP VDR + C M + G + + AV++S Sbjct: 299 GTSIYLADRVIPMLPHKLSNGICSLNPHVDRFTISCFMEIDENGEVVEHDIVPAVINSTE 358 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TYT V IL GDQ L+ QY+ + + L +L + RG I F+ +EAK + + Sbjct: 359 RMTYTNVNKILDGDQTLQLQYSHVKDLFFLMQELAMILQAKKARRGAIDFDVKEAKVLVD 418 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 ++ + +R + ++IEE M+LAN + A + + P ++R+H+ P + + F Sbjct: 419 SKGNTTDVVLRERGASDRIIEEFMLLANETVAEHFKWLELPFIYRVHENPKPKKLLQFSG 478 Query: 500 VLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + LG + G P + + ++E D P+ ++ T+LLR M++A YD + GHFGL Sbjct: 479 IAKTLGYTIKGSLENVYPGELSNIIEVSKDTPEHTIIATLLLRCMQKARYDEQCLGHFGL 538 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRYPDL +HR I+ + + N + + E M ++ S Sbjct: 539 ADEYYTHFTSPIRRYPDLIVHRLIRKYMFE------NRLDRRTIMHYQELMPEIALQTSA 592 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A R+V D +FM Q+G F+G+ISSVT FGFFV LD+ IDGLVHV+ L Sbjct: 593 REREAIMIEREVDDMKIAEFMEKQIGEEFEGIISSVTNFGFFVELDNT-IDGLVHVTDLT 651 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVG 735 +D+Y FD+ R +G+ +G+ +++ DRV+VRV + + ++ +DF ++ + + Sbjct: 652 DDFYFFDEKNIRYIGQRTGKVFKMSDRVKVRVSSASKKDKSVDFEIVGMKSNKKTTK 708 >UniRef50_Q9CH00 Ribonuclease R 1 n=113 Tax=Lactobacillales RepID=RNR1_LACLA Length = 817 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 248/812 (30%), Positives = 423/812 (52%), Gaps = 34/812 (4%) Query: 20 SREFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 RE I+++L K S +EL+V LH+ + + + L ++E + L FT + L Sbjct: 3 IREVIMDYLENSSKKALSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLNFTAKGKVEL 62 Query: 79 PERLD---LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD--- 132 E+ + ++ G + G+GF+ ++ + D++++ Q + GD+V + Sbjct: 63 AEKEEAKVVISGIFRANAAGFGFVSIDAEEPDVFVARGQTAFALDGDEVFIEIDKNANAL 122 Query: 133 RKGRREARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDILIPPDQIM 184 + E +V ++ Q+VG + +GFV + ++ + + + + ++ Sbjct: 123 KGTSAEGHVVEIIRHDVHQVVGTFVALNDDEKEQTGLIGFVKSRNKKIPYRVYLENEGLI 182 Query: 185 GARMGFVVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 +V VE+T P + G + E++G G+ V L + +I +P+ V Sbjct: 183 -PENKAIVRVEITHYPDKEFPQTMQGLVTEIIGQADDQGIDVLEVLASMDIVSEFPKEVL 241 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 Q + EEVPE GRVD R+ TIDG DA+D DDAV+ ++ G + L V IADV Sbjct: 242 DQAEAVPEEVPENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADV 301 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV ++PLD+EA RGTSVY +V+PMLPE LSNG+CSLNP+++RL C M +S + Sbjct: 302 SHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPE 361 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 GR+ Y+ ++++ + R+TY V ++ GD+ E YA + ++ + L+ +L+ R+ Sbjct: 362 GRVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRK 421 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG I F++ EAK I N + I + R A ++IE M+ AN + A E P + Sbjct: 422 RRGAIDFDTVEAKIIVNEKGLPIEIRKRTRGIAERMIESFMLEANETVATHFEAHGLPFI 481 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKP-EPRDYAELLESVADRPDAEMLQTMLLR 541 +RIH++P + + F A G+++ G + + + ++ + +P +L TMLLR Sbjct: 482 YRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLR 541 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM+QA Y N GHFGLA ++Y HFTSPIRRYPDL +HR I+ + T Sbjct: 542 SMQQARYSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREI-------GEGKTPANI 594 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 +++ ++ +H S ERRA +A R+V K +FM + VG ++G+I+SVT FG F+ Sbjct: 595 LQKWEDKIPEIAEHSSHRERRAVDAEREVEKMKKAEFMEEHVGEEYEGIIASVTRFGMFI 654 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L++ I+GLVH+S+L DY+ + + L+GE SG T+++G ++++V + +ID Sbjct: 655 ELENT-IEGLVHISTLKGDYFNYQERMLALIGERSGLTFKIGQPIKIKVVKADRMTGEID 713 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 F + P + + K KG R++ + + + + +K Sbjct: 714 FEYL-----PSELDLIDKAAKAKKKPDHKG--RKKSNQSLKVKSVAPKSTDKSANKSKNG 766 Query: 782 KDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813 + A + + K +K A +AAK K + Sbjct: 767 RRADEKFEFDKKKKKSAKKPFYSKAAKGKFTD 798 >UniRef50_C6WZE5 Ribonuclease R n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6WZE5_FLAB3 Length = 718 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 213/715 (29%), Positives = 355/715 (49%), Gaps = 30/715 (4%) Query: 24 ILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP-ER 81 IL + K+ + ++A + Q E + + L + D ++ + Y + + Sbjct: 23 ILGFMNKQSTKIYNYKQIADGIDYRNPRQRELVIQALHRLLSDQRVKEVEKGKYIINLKI 82 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 V GT+ ++ G +++VE DD+++ S+ +K + GDQVL + + E + Sbjct: 83 EGTVSGTIDFNQAGNAYVKVEEFDDDVFIHSKNVKDALQGDQVLI-VTYHFKGKKLEGSV 141 Query: 142 VRVLVPKTSQIVGRYF--TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 + V+ + VG + GFVV D ++ DI +P +I GA+ G VVV++T Sbjct: 142 LEVIKRNREEFVGTFQLINHKDFGFVVCDKKTINTDIFVPKGKIGGAQDGDKVVVKMTDW 201 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + G+I++VLG + L + +PY +P VE++ + + + A Sbjct: 202 KSGEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFPAEVEKEADDIDRTIHDSEVAK 261 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D+R + TID +DA+DFDDA+ +K G W + V IADVS+YV+P T LD EA +R Sbjct: 262 RRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSHYVQPGTLLDDEAYDR 321 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TSVY +V+PMLPEVLSN +CSL P D+ + + F V+ S Sbjct: 322 ATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFEMDENADVVNEWFGRTVIHSDR 381 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R Y + ++ L + + L L K+L K R G I+F+ E +F + Sbjct: 382 RFAYEEAQERIETGTG------DLAEEILTLDRLAKILRKERIRNGAITFDRSEVRFNLD 435 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARF--VEKAKEP----ALFRIHDKPSTEA 493 + D++ LIEE M+LAN + F + + EP ++RIHD P Sbjct: 436 ENSEPIGVYFKISKDSNHLIEEFMLLANRKVSEFISLNRKGEPTANTFIYRIHDDPDPTK 495 Query: 494 ITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + R + G ++ N K LL+ V + + M++T+ +RSM +A+Y Sbjct: 496 LEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIETLAMRSMSKAVYSTNP 555 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+GL Y+HFTSPIRRYPDL HR +++ L + + ++ + Sbjct: 556 IGHYGLGFDFYSHFTSPIRRYPDLIAHRLLQHYLDGGKSP------------NKQDYEEK 603 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +HCS ER A +A RD +++ FM +G F GVIS V FGF+V++ + +GL+ Sbjct: 604 SKHCSAMERLAADAERDSIKFMQVKFMEKHLGEEFTGVISGVADFGFWVQIPENGAEGLI 663 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + L +D Y +D + G +G ++LGD+V ++V N+ ++++DF +I+ Sbjct: 664 KLRDLMDDSYSYDPKNHLVHGARTGNQFQLGDKVRIKVMKANLIQKQLDFKIITD 718 >UniRef50_B9Y3M9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3M9_9FIRM Length = 750 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 249/739 (33%), Positives = 402/739 (54%), Gaps = 16/739 (2%) Query: 18 IPSREFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 I ++ I + +P S +L L + E+ + + + + +VF+++ Sbjct: 4 IDIKQQIETMIADEHYRPLSLAQLQETLGLSTTEEFVAMNKAVNELAEQYVIVFSQKGNL 63 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 +G + +R G+GFL +E ++ ++++ + ++GD + + L G Sbjct: 64 MPARMGGYYQGALSVNRKGFGFLDLED-ENSIHITEANLHGAMNGDVAIVKKLP-SFYGS 121 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGF-VVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 E ++RVL KT+ +VG +FT G G + DD R+ +++ Q G V+++ Sbjct: 122 DEGEVIRVLQHKTNTLVGTFFTSVGKGLQLRLDDERIKSRLIVKNWQAFKMVSGTKVLLK 181 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + + +IV++LG G+ + L ++I +P+ V +Q V + Sbjct: 182 VLRYG---DPMELEIVQLLGHIDDPGVDILSVLLEYDIDPQFPEEVMEQAQRTPSRVSPK 238 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 K GR D ++TIDGED++D DDAV EK GG +RL V IADVS+YV ++PLD+E Sbjct: 239 EKEGRRDCTGKMIITIDGEDSKDLDDAVCVEKIAGG-YRLGVHIADVSHYVPENSPLDQE 297 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTS Y +V+PMLP +LSNG+CSLNP+V RL + CEM +S G + Y+ + + + Sbjct: 298 ALKRGTSTYVVDRVVPMLPHLLSNGICSLNPKVLRLTLSCEMEISEAGEILNYEIFPSFI 357 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 + R+TYT V IL+G+++ +Y L + + + + + + K R E G I FE+ EAK Sbjct: 358 KTTERMTYTAVNAILEGEEEACRKYKKLTEMIGWMRDCSRAIRKRRHEAGAIDFETPEAK 417 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I N + +IE I+ +R +A +IE+ M+ AN AR ++ + PAL+R+H+ P + + Sbjct: 418 IILNEQNKIEEIQVRERKEAEMIIEDFMVTANECVARHMKWFEIPALYRVHEAPEPKKLR 477 Query: 496 SFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRG 554 F ++ +G G + P +LL+S D P ++ TM+LRSM++A YDP G Sbjct: 478 DFAKIVLLMGKRFKGSVEQIRPLQLQQLLDSFKDDPAYPVISTMMLRSMQKAKYDPRCLG 537 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLAL+ Y HFTSPIRRYPDL +HR + + G + +M + G+ Sbjct: 538 HFGLALEEYTHFTSPIRRYPDLIVHRMLH------KYGFGTALDPEMMKQDELKMEEYGK 591 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHV 674 S ER A EA R+V D K ++M DQ+G + +GVIS VT FGFFV L++ ++GLVHV Sbjct: 592 LTSERERAAIEAEREVEDMKKAEYMEDQIGKIAEGVISGVTKFGFFVELENT-VEGLVHV 650 Query: 675 SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 L +DYY +D L GE + + YRLG RV+++V + ++IDF L+ + R Sbjct: 651 QKLTDDYYHYDPDTLSLKGERTKKIYRLGQRVKIKVTGASKLHQEIDFDLVRPRKEKREP 710 Query: 735 GKTAREKAKKGDAGKKGGK 753 A++KA + + Sbjct: 711 IPAAKKKAGPRKEPSRPAE 729 >UniRef50_D0MHY2 Ribonuclease R n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHY2_RHOM4 Length = 751 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 257/720 (35%), Positives = 365/720 (50%), Gaps = 22/720 (3%) Query: 20 SREFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 R IL L ELA L + E + L +E + + Y Sbjct: 26 IRRAILSLLRNNAHKAFRPKELAKLLDLRDYEAYQRFWEVLSELEHQHLVARVKGGRYTY 85 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPL-GADRKGR 136 R V+G + H GYGF+ +EG++ +D+Y+S M T + GD+VL A R Sbjct: 86 ERRPYRVEGILRVHPQGYGFVEIEGQEDEDIYISEAHMGTALDGDRVLVGLAAPARGDRR 145 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 RE +++VL + Q VG ++ FVVPDD RL+ DI +P + GAR G VVV + Sbjct: 146 REGEVLKVLERRRKQAVGTFYPRGAYAFVVPDDPRLTRDIYVPREAFNGARAGDKVVVSI 205 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + + G+++EVLG + V + ++ +P+A ++ + + +PE Sbjct: 206 DRFDDPKASPEGRVLEVLGPASDPRVQVLALALSKDVRTGFPEAALKEAERIPDTIPERE 265 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R+DLRD + TID DA+DFDDA++ + G + V IADVSYYVRP + LD EA Sbjct: 266 YRRRLDLRDRAVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEA 325 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RGTSVY +VIPMLPE LSN +CSL P D+L M ++ R+ Y+ E V+ Sbjct: 326 YQRGTSVYLVDRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIH 385 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S R TY + I+ G PL + + H L + L KAR E G I F+ E K Sbjct: 386 SRQRFTYEEAQAIIDG------ADHPLAEPVRLAHELAQKLRKARMEAGAIDFDLPEVKV 439 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE--PALFRIHDKPSTEAI 494 + RI + +R AH+LIEE M+LAN A + K E P ++RIHD+P E I Sbjct: 440 ELDEAGNPIRIYRKERLAAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPDAEKI 499 Query: 495 TSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + G L + ELL+ V P+ +++ LR+M +A Y +N Sbjct: 500 RQLAQYVRVFGYHLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQN 559 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+GLA Y HFTSPIRRYPDL +HR +K L K + +E+ Sbjct: 560 IGHYGLAFDFYTHFTSPIRRYPDLMVHRLLKQYLKKAEKAPVV---------DADELEAR 610 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +HCS ER A+EA RD + + +M VG F+GV+SSVT FG FV L+D+ ++GLV Sbjct: 611 CRHCSERERAAEEAERDSVRFKQVQYMQQHVGERFRGVVSSVTNFGVFVELEDVLVEGLV 670 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 HV + +DYY +D+ L G SG+ YR GD VEV V + R+ID + Sbjct: 671 HVRDMGDDYYEYDERRYTLRGMYSGKRYRPGDVVEVVVVRADPATRQIDLRFVEPATDGE 730 >UniRef50_Q3IK27 Cold-shock RNAse R n=12 Tax=Gammaproteobacteria RepID=Q3IK27_PSEHT Length = 749 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 301/748 (40%), Positives = 441/748 (58%), Gaps = 25/748 (3%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 M+ +P + Y NPIP REFIL K +K +R+++A L ++ EQ E LRRRLR Sbjct: 1 MNLNPTAPLSSPIYDNPIPGREFILSLFGKMKKNLNREQIAHALELKNAEQKEALRRRLR 60 Query: 61 AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120 AMERDGQL+F++ + Y + ++ LV G + H DG+GF+ + DL+++ Q+ Sbjct: 61 AMERDGQLMFSQHKGYQVIDQALLVSGVITLHADGFGFVNYSASEKDLFIAKNQLAHVFE 120 Query: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 GD V A K ++++++ KT+ + G + +V D+++ + + Sbjct: 121 GDIVQILQEAASHKRSNN-KLIKIIEHKTTHLAGILKRQGTDYVLVADNTKCPQKVQVAQ 179 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 Q+ +G V ++TQ PT R +I EVLG GM +ALR H + W + Sbjct: 180 CQLANTSVGQYVNTKITQYPTFRHATQVQITEVLGLPHSAGMETKLALRRHGVADSWSKD 239 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q + L EV E+ K RVD R P VTIDGEDA+DFDDAVYCE+ G WRL VAIA Sbjct: 240 LLAQASSLGNEVTEQDKLARVDYRLFPFVTIDGEDAKDFDDAVYCERTEQGNWRLLVAIA 299 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YV+P+ LD EA+ R TS+Y P QV+PMLPE LSNGLCSLNP DRL +VC+MT+S Sbjct: 300 DVSHYVKPNDVLDIEAQQRATSIYCPGQVVPMLPEALSNGLCSLNPHEDRLVLVCDMTIS 359 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-----QDLREQYAPLVKHLEELHNLYK 415 G++T F E ++ SHARLTYT+ ++ + L E A + ++ LH LY Sbjct: 360 QDGQVTQANFTEGLIHSHARLTYTQAHAVIAKPHSSSAKQLAELNADVSPLIKNLHYLYL 419 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 L AR+ RG I F+++E K N ++I IE +RNDAH++IEE M+ AN+ A+F++ Sbjct: 420 DLSAARKLRGAIDFDTQELKLNLNKNQKITSIEPIERNDAHRMIEEFMLCANVCTAQFLD 479 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 K + P LFR+H P + + + R++LAE L+L GG+KP P DY +LL +++ R DA ++ Sbjct: 480 KHQIPGLFRVHAGPQQKKLQTLRALLAEKRLQLGGGDKPTPADYNKLLNNISQRSDASVI 539 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE------ 589 +T+LLRS QA Y N+GHFGLA +YAHFTSPIRRY DL HRAI+ + + Sbjct: 540 RTLLLRSQSQAEYSANNQGHFGLAYDAYAHFTSPIRRYADLVTHRAIRAKIQAKQQNGLQ 599 Query: 590 -----------QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 + + Y Y++E + L HCS R+A++ +R+V LKC + Sbjct: 600 RAISFLNVFANKASSVSKLAKKAYPYNLESIETLSLHCSAQSRKANDISREVESALKCSY 659 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 M +G+ F IS V+ GFFV LD ++GLV VSS + F+ Q+ +S Q Sbjct: 660 MEKYLGDTFTATISGVSSAGFFVELDCTGVEGLVPVSSFSQGEFVFNAAKQQW--SNSKQ 717 Query: 699 TYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + +G+RV V ++++++ +RK+ FSL S Sbjct: 718 KFTIGERVNVTLKSIDLRQRKMSFSLAS 745 >UniRef50_A6KZB8 Ribonuclease R n=8 Tax=Bacteria RepID=A6KZB8_BACV8 Length = 715 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 192/722 (26%), Positives = 341/722 (47%), Gaps = 25/722 (3%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 + S I TK + S +L+ L++ + M D L Sbjct: 12 RMKKSEMSERLISLFHTKPNETFSLKQLSSSLNLTTHPLKMLCADIITEMIEDDFLQEVE 71 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 + Y L + ++ G +G + + ++++ ++ D+V Sbjct: 72 KGHYKLNDHGLIMTGVFQRKSNGKNSFIPDDGGETIFIAERNSAHAMNNDKVKIALFAKR 131 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 + E ++ +L VG E F++ ++ L+ DI IP D++ G + G Sbjct: 132 KNRNPEGEVIEILERANDTFVGTLKVEKFYAFLLTENRTLANDIFIPKDKLKGGKNGDKA 191 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 VV++ + P +G+++++LG + L +PY++P+ VE + E+ Sbjct: 192 VVKIVEWPEEAKNPIGQVIDILGKAGENTTEMHAILAEFGLPYVYPKNVETAAEKIPAEI 251 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 E A R D R++ TID +DA+DFDDA+ + G W + V IADV++YV+ + Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D+EA R TSVY + IPMLPE L N +CSL P ++L ++ KG + + Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 ++ S R TY + +++ + + + EL+ L ++L K R G I F+ Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEG------DYKEEILELNKLAQILRKQRLAAGAIDFDRV 425 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP-----ALFRIHD 487 E KF + + + + +A+KLIEE M+LAN + A + K + +RIHD Sbjct: 426 EVKFEIDETGKPLSVYFKESKEANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHD 485 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 P + + + + G ++ + LL+ + ++ + +++T+ LR+M++ Sbjct: 486 LPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQK 545 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A Y N GH+GLA Y HFTSPIRR+PD+ +HR + LA + Q Sbjct: 546 ARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLLTRYLAGGRTVQ------------ 593 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 + +L H S E+ A A R + + +FM +++G F GVIS VT +G +V L++ Sbjct: 594 EAKYEELCDHSSEMEQIAANAERASVKYKQVEFMGERLGMEFDGVISGVTEWGLYVELNE 653 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +G++ + L +DYY FD+ L G + + LGD V ++V N++++++DF+L+ Sbjct: 654 NKCEGMIPMRDLGDDYYDFDEKNYCLTGRRHHKKFSLGDPVTIKVARANLEKKQLDFALV 713 Query: 726 SS 727 Sbjct: 714 EK 715 >UniRef50_D1BMT3 Ribonuclease R n=3 Tax=Veillonella RepID=D1BMT3_VEIPT Length = 764 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 251/688 (36%), Positives = 386/688 (56%), Gaps = 15/688 (2%) Query: 45 HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL-DLVKGTVIGHRDGYGFLRVEG 103 I G + LE R + + R+G L +R Y ++ + +G G+R YGF+ + Sbjct: 4 RIRGGKDLEMFIRSAKMLAREGVLTSSRPDVYRYEDQQHEEYEGIYKGYRKSYGFVIMLD 63 Query: 104 RKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLVPKTSQIVGRYFTEAGV 162 +D+Y++ + T +H D+V + + +D K +RE IV V+ IVG Y + Sbjct: 64 D-EDIYVAEQNKGTAMHNDKVRVRIVPSDYTKHKREGIIVDVIERANETIVGTYDRQQHF 122 Query: 163 GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGM 222 GFVVPDD R+ D+ + + AR G V+V++T+ P K G I E+LG G+ Sbjct: 123 GFVVPDDERIGTDVFVDLKNTLDARSGAKVLVKITKWPEGNKKPEGIITEILGYKGDVGL 182 Query: 223 AVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDA 282 ++ + H+IP+ +P+ V + + V E+ R DLRDL +VTIDGEDA+D DDA Sbjct: 183 DINCIMANHKIPFAFPKEVIEASEKIDTIVHED--PKRWDLRDLQMVTIDGEDAKDLDDA 240 Query: 283 VYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLC 342 V K G + L V IADVS+YV P+D EA RGTSVY +V+PMLPEVLSNG+C Sbjct: 241 VSGRKLPNGNYELGVHIADVSHYVTSGQPIDNEAYKRGTSVYLVDRVVPMLPEVLSNGIC 300 Query: 343 SLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP 402 SLN DR M C M + G + Y+ +++ R +Y +V+ L+ + + + Sbjct: 301 SLNAHEDRYAMTCMMEIDDSGTVVNYRIRPSIIHVGRRCSYKEVYKALE-ENIIPDDLVD 359 Query: 403 LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEEC 462 + L +L + K+L++ R RG + F+ E K + + + RI + R A +LIEEC Sbjct: 360 FIPMLRDLAEISKILNRMRRRRGALDFDFPEYKVLLDLDGTPLRIVKRDRTMAERLIEEC 419 Query: 463 MILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAE 521 M++AN + A + + +++RIH+ PS E + F+ VL LG L + PRD+ + Sbjct: 420 MLIANETVATHLRDTERTSVYRIHENPSEEKLDLFQKVLNYLGQNLVISADGVTPRDFQK 479 Query: 522 LLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 +L+ V + ++ Q M LRSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR Sbjct: 480 ILDVVKGQDIEQVAQIMTLRSMQQAKYSIENVGHFGLASTCYTHFTSPIRRYPDLMVHRL 539 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD 641 +K + + G+ + +H S+ E+ A EA R+ D K +M+ Sbjct: 540 LKADMHWKGGYSKRDV-------DEAFLAGAVEHSSIQEQVATEAERETTDLKKTQYMVP 592 Query: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYR 701 VG VF+G I+S+T FG FV L++ IDGLVH+S +++DYY FD+ L+G+ +G+TY Sbjct: 593 FVGEVFEGTIASITSFGMFVELEN-GIDGLVHISMMNDDYYFFDEEHFVLVGKRTGKTYH 651 Query: 702 LGDRVEVRVEAVNMDERKIDFSLISSER 729 LG++V V + ++++++IDF L + Sbjct: 652 LGEKVTVTLVKADVEKKQIDFVLGEVDN 679 >UniRef50_C1XQ79 RNAse R n=2 Tax=Meiothermus RepID=C1XQ79_9DEIN Length = 863 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 270/839 (32%), Positives = 413/839 (49%), Gaps = 67/839 (7%) Query: 22 EFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E ILE+L K K S E+ L + + E ++ L + + G+L+ RR YALPE Sbjct: 3 ERILEYLRKNPTKTYSLREVQRMLRL----EREEVKSALAELVKQGRLIEPRRGLYALPE 58 Query: 81 RLDL-------VKGTVIGHRDGYGFLRVEG-----------RKDDLYLSSEQMKTCIHGD 122 G + H G+GF+ + + DLY+ E + HGD Sbjct: 59 AKPAPKRGNKGFVGRLQVHPAGFGFVIPDALAPDQARLPPPEQRDLYIPKEFLGGAWHGD 118 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 QVLA P R R ++ +VL S++ GR G +V+PDD RL + + P+ Sbjct: 119 QVLAYPQPPGRDRRPWGKVAQVLERSRSKLTGRLEFRRGYAWVLPDDPRLPGKVKLEPEG 178 Query: 183 IMGARMGFVVVVEL--TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G G + VEL Q + + +E LG + H++ + Sbjct: 179 LAGLEQGARIAVELHFPQTGDKGGEIYATFLEYLGMADDPQSETRAVIVNHDLKSEFDPE 238 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + + E +P E A R D R L + TIDG DA+DFDDA++ E+ G +R+ V IA Sbjct: 239 ALAEAEAIPESIPPEEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIA 298 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR + LD+EA RGTSVY P +V+PMLPE LSNG+CSL P DRL + + ++ Sbjct: 299 DVSHYVREGSALDKEAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEIT 358 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 GR+ + F E V+ S ARLTYT+V +G + +++ L L L L + L Sbjct: 359 DGGRVLRHSFREGVIRSKARLTYTQVQAFAEGK-GMPDEFKWLEPDLALLLELTRKLKAK 417 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F E K I I QT+ DA LIEE M+LAN A+++ P Sbjct: 418 RVAAGALDFHFTEVKVDIGEAGEIHLIPQTEP-DARSLIEELMLLANRIVAKYLSDKGLP 476 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 AL+R+H+ P+ A + L++LG ELP G +P P+ +L+ V +P+A M+ T+LL Sbjct: 477 ALYRVHEDPTDMAYAKLAAQLSKLGYELP-GMEPSPKAMQAILKQVEGKPEAPMVSTLLL 535 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS+K A Y EN GHFGLA + Y HFTSPIRRYPDL +HR +K L+ Sbjct: 536 RSLKLARYAHENLGHFGLAAEHYLHFTSPIRRYPDLIVHRVLKTLMR-------RRLTPE 588 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + E ++ +H S ER A+ A RD+ + +C + G F GV+S VTGFG F Sbjct: 589 KVEHWREVFPRMAEHTSSRERSAEAAERDLTKYYQCCWAELHKGERFGGVVSGVTGFGVF 648 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L++ ++G+V +SSL +D+Y + + L+G + + R+GD +EV ++ VN+ R+I Sbjct: 649 VALEN-GVEGMVRLSSLLDDHYEYVEETLSLVGTRTKRRIRIGDPLEVVIQGVNLPTRQI 707 Query: 721 DF--------------------------SLISSERAPRNVGKTAREKAKKGDAGKKGGKR 754 + L +++ + K ++ +G +R Sbjct: 708 ELVPAEFAAVRPSNTAKPEISREVSRKPVLATTKPSRTKEKNMEGTKKRRVVGPPEGRER 767 Query: 755 RQVGKKVNFEPDSAF---RGEKKTKPKAAKKDARKA--KKPSAKTQKIAAATKAKRAAK 808 R+ G KV + E +T P+ + R ++ + + + A + + A+ Sbjct: 768 RERGPKVTMSRMYFGEWQKTEDETPPQNRRSGGRSGQHERAGGERSRSSQAGQPRHEAR 826 >UniRef50_C6VM99 Ribonuclease R n=45 Tax=Lactobacillales RepID=C6VM99_LACPJ Length = 804 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 259/732 (35%), Positives = 403/732 (55%), Gaps = 20/732 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E IL L + S ++L ELH G L + L MER + + L Sbjct: 7 QEQILTFLQAHPDRTYSVEQLTDELHFTGATAFTFLVKELANMERKKLVSTDDHDHFKLV 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR--- 136 + V+G+ G+ G+GF+R + D+Y++ + + I GD V + + R G Sbjct: 67 QETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPARPGSDRG 126 Query: 137 REARIVRVLVPKTSQIVGRYFTEAG----VGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 E +IV ++ +QIVG Y +G V D +LS L+ DQ + G V+ Sbjct: 127 PEGKIVSIVKRNYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHPTEGEVI 186 Query: 193 VVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 + E+ P + +G +V+G GM V + H++P ++P+ V + + + Sbjct: 187 IAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDEANRIPD 246 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 V +E K GRVD+ D PLVTIDG +++D DDAV + G + L V IADVS+YV ++ Sbjct: 247 YVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSHYVTENS 306 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LDREA RGTSVY +VIPMLP LSNG+CSLNP V+RL M CEM + G + +K Sbjct: 307 ELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGEIVNHKI 366 Query: 371 YEAVMSSHARLTYTKVWHILQ-GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 +++V+ SHAR+TY V IL+ D RE+YA LV + + +L+++L K R RG I F Sbjct: 367 FQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRRHRGAIDF 426 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + EAK I + I+ R A ++IE M+ AN + A+ + K P ++R+H+ P Sbjct: 427 DDNEAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFIYRVHETP 486 Query: 490 STEAITSFRSVLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 ++ + SF + G+ + G +K +P+ ++L+ VA +P+ M+ M+LRSMKQA Y Sbjct: 487 DSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLRSMKQARY 546 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 ++ GHFGLA Y HFTSPIRRYPD+ +HR I++ G + + Sbjct: 547 ADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEARA-------RYRDN 599 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 + + + S ERR + RDV K ++M D VG F+ V+ SV FG FV L++ + Sbjct: 600 LPNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGETFEAVVDSVMKFGLFVELENT-V 658 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +GLVH+S++D+DYY + + L+G + +T+R+G V+V++ V+ D+R++DF L++ E Sbjct: 659 EGLVHISTMDDDYYEYVEKQLALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFKLLNPE 718 Query: 729 RAPRNVGKTARE 740 AP+ RE Sbjct: 719 EAPKTDLLPKRE 730 >UniRef50_D0BNS1 Ribonuclease R n=2 Tax=Granulicatella RepID=D0BNS1_9LACT Length = 775 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 246/785 (31%), Positives = 403/785 (51%), Gaps = 30/785 (3%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R ++ + + E++ + + + L + L A+E +G L R + L Sbjct: 6 RTVLVSFFEEYAPESFYVKEISEHFGMNQSQDFKILVKELAALEEEGILELNRNGKFGLN 65 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL---GADRKGR 136 +KGT + G+GF+ V + D+++ + + GD+V + R+ Sbjct: 66 PLNQTLKGTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEVELVITEPADSYRQRS 125 Query: 137 REARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 +IV+++ T+Q+VG Y G VV D +L+ + + Sbjct: 126 ATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKLAGTRCLIRPNGLHPVD 185 Query: 189 GFVVVVELTQR--PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVA 246 G VV+VELT+ R+ G +V+ +G GM + + L+ IP +PQ V Q Sbjct: 186 GTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMVLQQLHIPTEFPQEVIDQAN 245 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + E + +E + GR DLR VTIDG DA+D DDAV K+ G + L V+IADVSYYV Sbjct: 246 LVPEVITDEDRQGRKDLRGQLTVTIDGADAKDLDDAVALTKREDGTFELTVSIADVSYYV 305 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 ++ +DREA RGTSVY +V+PMLP+ LSNG+CSL+P +RL M C M + G + Sbjct: 306 TENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTMSCRMEIDRSGTIY 365 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG 426 Y+ + +V+ S RLTY+ V + ++ E + + L ++ L+ +L++ R+ERG Sbjct: 366 QYEIFPSVIRSDMRLTYSLVNEL--YEKKEVEIQDEIQQMLLDMKELHHILERRRKERGA 423 Query: 427 ISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH 486 I FE+ EAK I + + I+ +R A +LIE M+ AN + A ++ P ++R+H Sbjct: 424 IDFETHEAKIIVDEQGAPIDIQIRERGVAERLIESFMLAANETVAMHYQRKNVPFIYRVH 483 Query: 487 DKPSTEAITSFRSVLAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 ++P E + F + G+ + G + P+ + L+ V ++ TM+LRSMKQ Sbjct: 484 EQPQQEKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDEVKGETYEAVVSTMMLRSMKQ 543 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A YD GH+GLA + Y HFTSPIRRYPDL +HR I+ G+ + Sbjct: 544 AKYDIIPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQY-----EGSGSFLSKQQEELN 598 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 ++ ++ S ER A +A R+V K +FM D++G F+G++SSVT FG FV L + Sbjct: 599 ASKLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIGQEFEGIVSSVTKFGMFVELPN 658 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++GLVH++ ++ DY+ F + L+GE +G TYR+GD V+V++ V+++ +IDF L Sbjct: 659 T-VEGLVHITHMNQDYFNFIESHLVLIGERTGVTYRIGDCVKVKLIKVDVEAHEIDFILA 717 Query: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 + K + GK+ K+ + + + + + + + KA K R Sbjct: 718 ADNADLITQNK-------RPTKGKEVPKKATKKESRSKKSKKSSKNKGRQHFKAQAKQKR 770 Query: 786 KAKKP 790 + K Sbjct: 771 RKKHS 775 >UniRef50_C1CZA7 Putative Ribonuclease R, (RNase R) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZA7_DEIDV Length = 1123 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 257/812 (31%), Positives = 392/812 (48%), Gaps = 33/812 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELH---IEGEEQLEGLRRRLRAMERDGQLVFTRRQC 75 P++ ++ L K +P +L + L L + G +V TRR+ Sbjct: 185 PAQALVVAQLRKLGRPVHVRDLERTFTRQMMNRLGDWRDLEALLETLVESGTVVRTRRRT 244 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP------- 128 Y LPE + LV+G G+GF+ + +D Y+ +EQ +GD VL + Sbjct: 245 YGLPEAMSLVRGKFQASAAGFGFVVPDSGGEDYYIPAEQTLEAWNGDIVLVRMEGRGDSG 304 Query: 129 ------LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 G G A +VR++ S++VG G + PDD R IL+ P+ Sbjct: 305 RGGGPRRGQRGDGNPRASVVRIVQRAYSKLVGTLEFHHGHPILKPDDHRARHRILVLPEG 364 Query: 183 IMGARMGFVVVVELTQRPTR--RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G + G VV EL P + G++V VLG+ + + + +P Sbjct: 365 LEGLQAGARVVTELF-WPENTGEDEVFGQVVRVLGEQDDPETETEAVIVKFGLRGEFPGE 423 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V + A + E+P EA GR+DLR+ + T+DG DA+DFDDA++ + G + + V IA Sbjct: 424 VMAEAAAIPTEIPAEALVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIA 483 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR TPLD EA R TSVY P +V+PMLPE LSNG+CSL P DRL M + +S Sbjct: 484 DVSHYVREGTPLDDEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPYQDRLTMTALVELS 543 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 ++G + K +V++S ARLTY +V + L + L L L + L + Sbjct: 544 AEGDILDVKIAPSVINSKARLTYDEVQAYSEATATLPDHARHLEGDLHLLLKITSKLRQK 603 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F+ E K + R+E I + A +IE+ M+LAN A ++ + + P Sbjct: 604 RLREGSLDFKMREVKVDVGPDGRMELIPIREET-ARGMIEDLMLLANKVVAHYLLQREIP 662 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFRIH++P+ + + LGL PGG +P P+ Y +L+ V P ++ T+LL Sbjct: 663 TLFRIHEEPTLQRFQEVSQAIGRLGLAFPGG-EPTPQAYQAVLKQVRGTPRESVVNTLLL 721 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RSM+QA Y EN GHFGLA Y HFTSPIRRYPDL +HR +K +L E Sbjct: 722 RSMQQAKYAGENLGHFGLAFDEYLHFTSPIRRYPDLMVHRVLKGVLGGELKAGNREVAK- 780 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + +G H S ER A EA RD+ + + + + + F G +S V G + Sbjct: 781 ----LQGRLPAMGDHTSDRERTAAEAERDLTKYYQAKWAQEHLQETFAGNVSGVVASGLY 836 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V LD+ ++G +H+S+LD+DYY + + Q L G S G+T+RLGD V V + AVN R I Sbjct: 837 VALDN-GVEGKLHISNLDDDYYVYIEDAQMLRGRSGGRTFRLGDSVTVTISAVNPMARMI 895 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 D +L + + + K ++ + + K + P + + A Sbjct: 896 DLTL------GDSTQERDMNEVKPRARRREEREAERREKLQSVTPTAPRKFTLDDPQPAV 949 Query: 781 KKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812 + + ++ A + R + Sbjct: 950 QSAPARQERTGAGGRGYERDRSGDRRGPGQQG 981 >UniRef50_B0S130 Exoribonucleases n=2 Tax=Finegoldia magna RepID=B0S130_FINM2 Length = 701 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 245/710 (34%), Positives = 395/710 (55%), Gaps = 16/710 (2%) Query: 20 SREFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 ++ +L + + P + DEL+ L+IE ++ + + + +++D +++ + Sbjct: 3 IKQKVLNIVNSNDYIPLTFDELSSRLNIEKKD-KKIFHKIINELQKDKKILLDKNSNIIP 61 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR- 136 GT+ G + + + DD++++ + + IH D+VL + R Sbjct: 62 ITEQKAYPGTIQGSGSDFCYFIPDDENVDDIFIAKKDLNGAIHKDKVLVTITVEKKPNRS 121 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E +++++L +T ++VG + G GFV+ DD + FD+ + GA+ VVV+L Sbjct: 122 PEGKVLQILSRETKKLVGTFDEAKGYGFVILDDKKYGFDVFVQSGNKNGAKNNDKVVVKL 181 Query: 197 TQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + P G IVEVLG G+ + +T ++PY +P+ V+QQ +++ V E Sbjct: 182 IKTPSKNHKNPEGVIVEVLGGKDDPGIDIYSIAKTFKLPYEFPKKVKQQAKEIEQHVDES 241 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 K R+D RDL V+IDG DA+DFDDA+ K +G + L+V IADVS+YV+ +T LD+E Sbjct: 242 EKKSRMDFRDLLTVSIDGSDAKDFDDAISITK-KGENFVLYVHIADVSHYVKKNTALDKE 300 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RGTSVY +VIPMLP LSNG+CSLNP DRLC+ +M +S G+ YKFYE+V+ Sbjct: 301 AFRRGTSVYMLDRVIPMLPVELSNGICSLNPNEDRLCLTIKMEISPTGKTLDYKFYESVI 360 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 +S RL Y V L+ D D + L +L + LY++L R++RG I F+ E K Sbjct: 361 NSDYRLIYKNVSDFLE-DIDNPYEDEKLTDNLLLMKELYEILSARRKKRGSIDFDFPETK 419 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 I + ++ + + +R +KLIEE M++ N + A P L+R+H++P E + Sbjct: 420 IILDENSKVIDVTKDERRIGNKLIEEFMLITNETVASHFGYLDRPFLYRVHEEPDEEKVN 479 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 +F+ +L+ G L G +DY +L + +P+ +L ++LLRSM++A Y H Sbjct: 480 TFKRILSNFGYHLK-GKNLYSKDYQRILNELDGKPEKPLLASLLLRSMQKAEYSENPSIH 538 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA Y HFTSPIRRYPDL +HR +K + + T M+ + + + Sbjct: 539 FGLASMFYTHFTSPIRRYPDLFIHRIVKNFINHKPD-------TNNEKEFMKYIKDIAKQ 591 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 CS ERRA+EA R+ D ++M + F+G+ISS+T FG FV+LD+ I+GLV Sbjct: 592 CSATERRAEEAEREAIDMKSAEYMQQHIDEEFEGIISSLTKFGIFVQLDNT-IEGLVQFQ 650 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 S+ +DYY FD+ + GE + ++Y +G +V V+V + D+R+IDF + Sbjct: 651 SMIDDYYVFDEKNYTVYGERTKKSYHIGQKVRVKVINSDKDKRQIDFEFV 700 >UniRef50_Q6F7U9 Exoribonuclease R n=22 Tax=Bacteria RepID=Q6F7U9_ACIAD Length = 817 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 323/793 (40%), Positives = 453/793 (57%), Gaps = 21/793 (2%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP + EAE+Y NPIPSR IL L + + P S EL I ++ ++ L RL AM Sbjct: 19 DPEAKAEAERYDNPIPSRTLILTTLEQLDLPQSHAELVDHFDIHDQKSIDALSHRLIAMV 78 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 RDGQL + TV + G+G ++ ++DL L +++ +GD+ Sbjct: 79 RDGQLSKDGF-KFQPIGEQPTFDATVYINNKGFGSAHID-GQNDLLLPERELRLVFNGDR 136 Query: 124 VLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI 183 V + DRKG+ I V + Q++G+ G F+ P I + + I Sbjct: 137 VKVRQTSVDRKGKAWGFITEVTQHRVKQLIGKLAVHEGEYFLQPSAPNAHQPIPLEKELI 196 Query: 184 M--GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 A++G + V + PTR + G I++ + D T + + + +PY +P+ V Sbjct: 197 EHAQAKVGENLRVAIDDYPTREEFSTGHIIQSMSDKADTEIIIPQTILEFGLPYEFPEEV 256 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 + K E ++ GR+DLRDLPLVTIDGEDARDFDDAVY EK+ GGG+R+ VAIAD Sbjct: 257 VKDAESFK-EPSKKDIEGRIDLRDLPLVTIDGEDARDFDDAVYAEKRSGGGYRVVVAIAD 315 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVR PLD EA+ RGTSVYFP V+PMLPE LSNGLCSLNP VDRLCMVC++ +S Sbjct: 316 VSHYVRLGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPHVDRLCMVCDLKLSR 375 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 GR+ Y+FY +VM S ARLTYT+V + G D + K L L LY+ L R Sbjct: 376 AGRVMSYEFYPSVMHSKARLTYTQVGNYFDGQTDAIPDDKNIQKSLNTLFQLYQTLKGLR 435 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +R + FE+ E F+ I+ I RN+AHKLIEECM+LAN++AA F + P Sbjct: 436 AKRHAMEFETIETYMTFDELGGIKEILPRTRNEAHKLIEECMLLANVAAAEFSLQHDIPM 495 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+R+H+ P I + + LG LP ++P DY ++E+ DR DA + +LLR Sbjct: 496 LYRVHEAPEFSRIQKVKDFVKLLG--LPFPDQPTQADYQRVIEATKDRIDAPSIHAVLLR 553 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM QA Y +N GH+GLA ++Y HFTSPIRRYPDL LHRAIK L ++ Sbjct: 554 SMMQAYYGAKNAGHYGLAYEAYTHFTSPIRRYPDLLLHRAIKAHLQQKP----------- 602 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 Y S + G+ S ERRADEA+R V WLKC +M +G F G+IS+VT FG FV Sbjct: 603 YPLSGAALDDAGEQFSRTERRADEASRSVTTWLKCHYMKQHLGEEFIGIISAVTEFGLFV 662 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L DL++DG++HVS L +D++ +DQ Q L+G++ GQ + LGD V+++V AVN+DERKID Sbjct: 663 TLKDLYVDGMIHVSQLGDDFFLYDQASQSLVGQNRGQIFGLGDEVKIKVAAVNLDERKID 722 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 F L+ + + G+ R+KA + + + V + + R ++K+K K + Sbjct: 723 FELM---QQITHAGRVIRQKAPRSSKTQATEQVFNVPSETTSTQERDTRKKEKSKSKPSS 779 Query: 782 KDARKAKKPSAKT 794 + AKK S + Sbjct: 780 YAKKSAKKSSPAS 792 >UniRef50_A3EPY9 Ribonuclease R n=2 Tax=Leptospirillum sp. Group II RepID=A3EPY9_9BACT Length = 744 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 255/750 (34%), Positives = 395/750 (52%), Gaps = 17/750 (2%) Query: 15 ANPIPSREFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRR 73 +P+ E IL L + KP D L + + +++ + R L + + Q++ + Sbjct: 8 EHPLTPEERILAFLREEAQKPVRSDRLVEAV-LRKKKERSDVSRALDRLVAEKQVILLKG 66 Query: 74 QCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR 133 LP++L +G + H DGYGF+ EG ++DLY+ K +H D+VL+ LG D Sbjct: 67 GYAGLPDKLHFREGMFLSHPDGYGFVVTEGEREDLYVPPGATKGAMHQDKVLSVHLGTDH 126 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 +GR E ++V ++ S +VG G F+ P D ++ + L+ + + G + V Sbjct: 127 RGRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVDNGAEKLQEGELAV 186 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +++ + P GKI LGD + D+ + TH + +P VE + + +EV Sbjct: 187 LDILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKRMAKEVA 246 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E RVDLR L ++TIDG+ ARDFDDA+ + G +++ + IADV YV P + LD Sbjct: 247 VEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELD 306 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA RGTSVYFP +V+PM PEVLSNG+ SLNP DRL + +S G++ + + Sbjct: 307 KEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRS 366 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S R TY++V IL G+ + L L L K L + R + G + F+ E Sbjct: 367 VIRSRLRATYSRVHPILAGESTDSPESK-FSVQLRSLWKLAKNLREERFQNGSLDFDLPE 425 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 + + + I ++ R +H L+EE M+LAN A + + A++R+H+ PS E Sbjct: 426 PEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEK 485 Query: 494 ITSFRSVLAELGLELPGGNKPEPR--DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 S L LG+ +P + + + D + +LES P +M+ +LRS+KQA YD Sbjct: 486 TESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDVY 545 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GHFGLA+ Y HFTSPIRRYPDL +HR + S + Q Sbjct: 546 PLGHFGLAMDDYTHFTSPIRRYPDLIVHRLL-----------DLPEGRPSGEGSFYPLEQ 594 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 + S ER + EA R D K FM +G F G +S VTGFGFFV L D+ ++GL Sbjct: 595 VAVQASERERASVEAERMAVDLKKIRFMGQHIGKKFSGSVSGVTGFGFFVELSDVLVEGL 654 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 V S+L++DYY +D+ L GE++ +TYR+GDR+EV V V+ + +I+F+L E P Sbjct: 655 VPFSALNDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFAL-DQEGRP 713 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKV 761 ++ K +++ K + ++ GK R+ G Sbjct: 714 ESLQKVRKKRKGKKNRSQRAGKSRKKGSAK 743 >UniRef50_C6VV97 Ribonuclease R n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VV97_DYAFD Length = 795 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 239/800 (29%), Positives = 387/800 (48%), Gaps = 42/800 (5%) Query: 8 EREAEKYANPI----PSREFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +REA + + + I E ++ + ++ L + Sbjct: 14 KREASAPHHIVSYIDNLKADIAAFFDLNAEHSFRPFDVHDHFGVHDKKVRLLFNEILHEL 73 Query: 63 ERDGQLVFTRRQCYA---LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 E+DG+LV+ + Y L + + G V G+ F+ +EGR+DD+Y+ E + Sbjct: 74 EQDGRLVYNKNGTYHAAPLKTKPQGLTGRVERVNKGFAFVVIEGREDDIYVDLELLNGAW 133 Query: 120 HGDQVLAQPLGA---------DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDS 170 GD V QPL + R E R+ ++ ++IVG V PD+ Sbjct: 134 DGDIVQVQPLSKNLRSKGRGDSGRNRTEGRVTDIVERSNAEIVGIIEINPRFAVVQPDNK 193 Query: 171 RLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 RL I + PDQ+ AR G V+V++T+ TRR++A G+IV VLG + + L Sbjct: 194 RLYDPIYLEPDQVGAARHGDKVIVKVTEWSTRRSQAEGEIVSVLGAAGNNDVEMHAILAE 253 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 +PY +P VE + + ++ ++ A R D+RD+ TID DA+DFDDA+ Sbjct: 254 FGLPYHFPDEVEAEAQKIPNKIVKKDLAKRRDIRDVLTFTIDPVDAKDFDDALSVRYLDE 313 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 + V IADVS+YV P T L++EA R TSVY + +PMLPE LSN LCSL P DR Sbjct: 314 DVVEVGVHIADVSHYVLPGTELEKEALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDR 373 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 L ++SKG+L F V+ S R TY + +L + K L+ L Sbjct: 374 LAFSAIFEITSKGKLLKEWFGRTVIHSDRRFTYEEAQAVLDSGEG------DFPKELDTL 427 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 + L K+ K R ++G I+FE+ E +F + E R I +R+D++KLIEE M+LAN Sbjct: 428 NKLAKIFRKERFKKGAINFETPEVRFRLDPEGRPLGIYTKERHDSNKLIEEFMLLANKRV 487 Query: 471 ARFVEKA-----KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK-PEPRDYAELLE 524 A +V K ++RIH+ P + + +F + +A+LGL+L + + +L Sbjct: 488 AEYVYSLSKGEDKNTMVYRIHEAPDPDRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLA 547 Query: 525 SVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKY 584 V +P+ +++++ +R+M +A Y E+ GHFGLA + Y+HFTSPIRRYPD+ HR +++ Sbjct: 548 KVEGKPEQNLIESLAVRTMAKARYSTEDLGHFGLAFRRYSHFTSPIRRYPDVMAHRLLQH 607 Query: 585 LLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG 644 L + E + +H S ER A EA R + + ++M Sbjct: 608 YLDGGA------------NVDQETYERASKHSSERERLAAEAERASIKYKQVEYMSMMDP 655 Query: 645 N-VFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 F G+I+ VT FG FV + + +GL+ ++ L +DYY D+ R++G+ + + Y G Sbjct: 656 EKEFGGIITGVTEFGIFVEITETASEGLIRMTDLGDDYYELDKENYRVIGQHTKKIYAFG 715 Query: 704 DRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNF 763 D V+V+V+ N+ R +D L ++ R+ + ++ + G Sbjct: 716 DAVKVKVKETNLARRSMDLYLAGTKPGRRSEFSRPDFGRDRDRRPRERKPKEPRGSGRVK 775 Query: 764 EPDSAFRGEKKTKPKAAKKD 783 G K K +++ Sbjct: 776 RGAGGTGGGSSAKVKRRRRN 795 >UniRef50_D2QSQ5 Ribonuclease R n=2 Tax=Bacteroidetes RepID=D2QSQ5_9SPHI Length = 825 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 223/800 (27%), Positives = 376/800 (47%), Gaps = 55/800 (6%) Query: 8 EREAEKYANPIPSREFILEHLTKR---------EKPASRDELAVELHIEGEEQLEGLRRR 58 ER + + PI + L+ + E+ +++++ + Sbjct: 35 ERSGKSHVRPIQQADSFLDEMKNDIMAFFQINDEQSFTQEQVLDHFDTSDRRMKLIMHGL 94 Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE-------GRKDDLYLS 111 + + +G +V Y ++V+G V + F+ + R DD+++S Sbjct: 95 IGELTDEGTIVRQPDGTYRADADANVVEGVVDHVNSRFAFVIPDTAAGTARDRDDDIWVS 154 Query: 112 SEQMKTCIHGDQVLAQPLGADR-------KGRREARIVRVLVPKTSQIVGRYFTEAGVGF 164 ++ + + GD+V R + R E ++ V+ +++VGR GF Sbjct: 155 TDDLAGAVDGDRVRVVRFQDSRNGGRNAARRRIEGKVASVVERGRTELVGRIEVWPTYGF 214 Query: 165 VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTK---AVGKIVEVLGDNMGTG 221 VVPD ++ DI IP +++ GA G V+V LT+ P + G+++ VLG Sbjct: 215 VVPDSKKIYDDIFIPKEKLGGANDGEKVIVRLTKFPDPNSSKQRFEGEVITVLGVAGQNN 274 Query: 222 MAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDD 281 + L +P +P VE++ + ++ ++ A R D+RD+ TID DA+DFDD Sbjct: 275 TEMHAILAEFGLPIHFPADVEKEAEAIPTKILKKDLAKRRDMRDVTTFTIDPIDAKDFDD 334 Query: 282 AVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 A+ + G + + + IADV++YV P + L+ EA R TSVY +V+PMLPE LSNGL Sbjct: 335 ALSVQILDNGNFEIGIHIADVTHYVLPGSKLEEEAFKRATSVYLVDRVVPMLPEKLSNGL 394 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA 401 CSL P D+L ++S ++ F + S+ R Y + IL + Sbjct: 395 CSLRPNEDKLTFSAVFEMTSDAKIVNEWFGRTAIHSNRRFAYEEAQDILNSNSG------ 448 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 ++ L L+ L L R + G I+FE+ E +F + + R D +KLIEE Sbjct: 449 DYIEELRLLNELAYKLRDERFKNGAINFETVEVRFRLDENGVPLAVYPKIRQDTNKLIEE 508 Query: 462 CMILANISAARFVEKA--------KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK 513 M+LAN A FV + ++R+H+ P+ + + SF +LG +L ++ Sbjct: 509 FMLLANKRVAEFVHSLSKRNKGGEENTMVYRVHESPAEDKLRSFSDFARKLGYKLNVDDE 568 Query: 514 PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRY 573 + S+ +P+A MLQ + +R+M +A Y E+ GHFGLA + Y+HFTSPIRRY Sbjct: 569 HLSNSMNRFMASIEGKPEANMLQQLAVRTMSKARYSTEDLGHFGLAFKRYSHFTSPIRRY 628 Query: 574 PDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADW 633 PD+ HR +++ L K + +E + +H S E+ A +A R + Sbjct: 629 PDMMAHRLLQHYLDKGK------------PADRDEYEEKCRHSSEREKMASDAERASIKY 676 Query: 634 LKCDFMLDQ-VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 + +FM VF+GVIS VT FG FV + + +GLV + L +D+Y FD+ R++ Sbjct: 677 KQVEFMSRMAPDQVFEGVISGVTEFGIFVEITENSCEGLVRMQDLSDDFYEFDKDNYRII 736 Query: 693 GESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE--KAKKGDAGKK 750 G + + Y GD V VRV+ N+ R +DF+L+S + + R+ ++ G Sbjct: 737 GSRTKKMYTFGDAVVVRVKETNLARRSMDFALVSDKAGRATDAGSGRKSGRSDSSRLGGS 796 Query: 751 GGKRRQVGKKVNFEPDSAFR 770 R+ G + + Sbjct: 797 SSTRKVGGSRGKESVAAKGE 816 >UniRef50_Q048G6 Exoribonuclease R n=21 Tax=Lactobacillus RepID=Q048G6_LACDB Length = 789 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 250/784 (31%), Positives = 399/784 (50%), Gaps = 31/784 (3%) Query: 24 ILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 +LE K S D++ + + L + L +E++ Q++ Y L + Sbjct: 11 VLEIFRHNPQKQFSVDQIERQARRDRLGNFTDLVKALAYLEQEKQIITDGNGRYQLAKEN 70 Query: 83 DLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADR---KGRRE 138 V+G + G+GF+R++ + DD++++S+ K + GD+V + E Sbjct: 71 TEVEGVFRANDKGFGFVRLDDEEADDVFINSDATKLALDGDRVKVKITAGGNPWNGKGPE 130 Query: 139 ARIVRVLVPKTSQIVGRY--------FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 ++ +L S IVG Y G+V+P + + + + + +MG Sbjct: 131 GQVEEILERGASSIVGEYTPLEDLQVKISHFAGYVIPTNKKFKKYRVYVSENGLIPQMGD 190 Query: 191 VVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 +V V L PT G +VE++G+ G+ + + H+I WP+ +Q + Sbjct: 191 MVKVSLKTYPTEDLPDQMTGAVVEIIGNKNDPGVDIMSIVAEHDIRTEWPEDALEQANAI 250 Query: 249 KEEVPEEA--KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + V EE +AGR D+ D P VTIDG+D++DFDDAV K G + L V IADV++YV Sbjct: 251 PDHVTEEERHEAGRRDITDQPAVTIDGDDSKDFDDAVVLWKLDNGNYHLGVHIADVAHYV 310 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLT 366 + TPLDREA RG S Y +VIPMLP LSNG+CSLN VDRL + C+M ++ +G Sbjct: 311 KEGTPLDREAFARGNSTYLVDRVIPMLPFRLSNGICSLNEGVDRLVLSCDMEITPEGERV 370 Query: 367 GYKFYEAVMSSHARLTYTKVWHILQG---DQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 Y Y A+M SH RLTY KV L+ D DL ++Y + L+++ L++VL K R Sbjct: 371 SYDIYPALMRSHGRLTYNKVNQALRADVPDSDLEDKYVKVRPMLKDMAALHEVLYKKRHA 430 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG I FE EAK I + + + I R A K+IE M+LAN + A + K P L+ Sbjct: 431 RGAIDFEEPEAKIIVDEKGKPVDIVLHSRGTAEKMIESFMLLANETVAEAYYRKKVPFLY 490 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 R+H+ P + I+ F + GL + N +P D +++ + ++Q M+LRS Sbjct: 491 RVHETPEADRISRFFEFCSAFGLNVKADPNDIKPLDLQKVVTKTLGTSEESVVQMMMLRS 550 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 +KQA Y + GHFG+A + Y HFTSPIRRY D +HR I L + G Sbjct: 551 LKQAHYSEDPLGHFGIAAKYYTHFTSPIRRYSDTMVHRMIHAYLEEGMGDDVK------- 603 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + EE+ + SM ERR+ + R D ++M DQVGN F+ V+SSVT FG FV+ Sbjct: 604 EHFKEELSEAADQTSMQERRSIDTERATNDLKMTEYMADQVGNKFEAVVSSVTSFGMFVQ 663 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L++ ++GL+H+S+L +DYY +D+ L G ++ + Y++G ++V + N+++ ++D Sbjct: 664 LENT-VEGLIHISNLKDDYYSYDEKSMTLTGRTTHKKYKVGMPIKVVLTNANVEQHQLDI 722 Query: 723 SLISS--ERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA 780 + ++ P N R + G+ R +P RG++ + + Sbjct: 723 EVYDPDAKKRPHNDRGMGRRSGDRNFKGRSNYGGRDKSGDRRHKPSRNNRGQRLGQSERG 782 Query: 781 KKDA 784 + Sbjct: 783 NRRR 786 >UniRef50_B3ETS7 Putative uncharacterized protein n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETS7_AMOA5 Length = 718 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 222/705 (31%), Positives = 355/705 (50%), Gaps = 30/705 (4%) Query: 32 EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---ERLDLVKGT 88 K + L +G E ++ L + G + R + +P ++L V G Sbjct: 34 GKGFTFSSLIKHF--KGNLSKENIKEALADLVIQGAIERRDRGKFLVPFNIDKLPYVVGK 91 Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR--KGRREARIVRVLV 146 V GY ++ V + D+ + + + + GD V + KG R+V +L Sbjct: 92 VDYVNPGYAYVVVGDGQQDVLVRQKDLLYALDGDVVKVAITKQENGTKGHPVGRVVEILE 151 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++ VG + V FV+P R+ +DI + P+ + A+ VVVEL +RPT Sbjct: 152 QNKNKWVGTVQQQGSVTFVLPISRRMHYDIFVRPENLKKAKHNDRVVVELVKRPTTSKNP 211 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 G+I+EV G + + + +P +P+ V + + + ++P+E A R D R++ Sbjct: 212 EGRIIEVFGPMGENDVEIHTIMAEFNLPTQFPENVLAETSAISIDIPKEEIAARKDFREV 271 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 +TID EDA+DFDDA+ + G + V IADVSYYV+ ++ +D+EA RGTSVY Sbjct: 272 FTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQEAFERGTSVYLV 331 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 + IPM+PE LSN LCSL P DR + +G L F E V+ S RL+Y + Sbjct: 332 DRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEWFGETVIHSDQRLSYEEA 391 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 + L + + L+NL K L R + G I+F++ KF + + R Sbjct: 392 QQAITQPT------HSLHEQITTLNNLAKKLRADRFKSGAINFDTPSVKFQLDKQGRPLS 445 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKE-----PALFRIHDKPSTEAITSFRSVL 501 I D+H+LIEE M+LAN A V + K+ ++R HD+P+ E + F + Sbjct: 446 ILPKVSEDSHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQPNLERLGDFALFV 505 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 + G + + + L E +A +P+A ++QT+ +R M +A+Y E + HFGLA + Sbjct: 506 KQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLMAKALYTTEAKPHFGLAFE 565 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPDL +HR +K L E +++ + QH S ER Sbjct: 566 HYTHFTSPIRRYPDLLVHRLLKKYLKGE------------FYFEEAIYEKKCQHASERER 613 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 A +A R + + + M G KGVISS+ +G +V L D+ +G++ +S L +DY Sbjct: 614 VAADAERASIKYKQVELMQTLQGKRLKGVISSLMEWGIYVELLDILCEGMIRLSDLTDDY 673 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 Y D+ G +L+GE + + Y+LGD VEV ++A ++ +R +D L+ Sbjct: 674 YVLDKKGFKLVGERTKKVYQLGDLVEVEIKACDISKRTVDLWLVG 718 >UniRef50_A1AWH7 Ribonuclease R n=3 Tax=Gammaproteobacteria RepID=A1AWH7_RUTMC Length = 705 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 320/722 (44%), Positives = 454/722 (62%), Gaps = 24/722 (3%) Query: 4 DPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 DP+ +RE++KY PIPSR +IL K+ EL L I Q + L RLRAM Sbjct: 3 DPYYKRESKKYNKPIPSRGYILSFFEKKSHKLH--ELCNLLSI-DHHQKKPLTHRLRAMV 59 Query: 64 RDGQLVFTRRQCYALPERLDLV-KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 RD QL +R Y + V GTVI + G+GF+ ++ DL LSS+QM+ HGD Sbjct: 60 RDQQLNCDQRGVYHKFSEKNWVMTGTVIANPKGFGFITLDKGGKDLRLSSKQMQLVFHGD 119 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +V + L +I++V+ +VGR E +VV DD R+ +I I Sbjct: 120 RVKVRLLNQRGDT----QIIKVIKSI-ETVVGRLHLEKDGAYVVVDDKRIKHNISISKIN 174 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 +V+V++T+ PT ++ AVG+IV++LG M G+ D AL + IP + Sbjct: 175 REHLDE-QIVIVKITKSPTLKSLAVGEIVQILGSYMDEGVETDSALYRNGIPVDFSPEAL 233 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 Q L V + K GR+D+ + LVTID ED+RDFDDAVY + G W+L V+IADV Sbjct: 234 IQTDKLPSIVTDSDKKGRIDITKMKLVTIDDEDSRDFDDAVYAQTTSKG-WKLVVSIADV 292 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S+YV+ LD++A +RG SVYFP V+PMLPEVLSNGLCS+NP V+RLCM CEM + + Sbjct: 293 SHYVKEGLYLDKDATDRGNSVYFPHHVVPMLPEVLSNGLCSINPDVERLCMTCEMNIDTH 352 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G L YKFY AVM SHARLTYTKV IL D DL +QYA ++ +L L++LYK L A+ Sbjct: 353 GNLLDYKFYPAVMLSHARLTYTKVSQILEHHDVDLTQQYASVMDNLNTLYDLYKALKYAK 412 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +RG + F+ E++ +FN +I+ I RNDAHKLIEECM++AN ++A+F+ E Sbjct: 413 IKRGVMDFDRIESQILFNDNGKIDNIIARSRNDAHKLIEECMLMANQASAKFLNHHNEDF 472 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+RIH KP+ E + R L +GL L GG +P+ +D+A++L S R D +++T++LR Sbjct: 473 LYRIHPKPTVEKVEVTRQFLTAIGLTLEGGTQPDSKDFAKVLASAKGRDDETIIKTVVLR 532 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 +MKQA+Y P N GHFGLA ++Y HFTSPIRRYPDL +HRAIK +L K+ Sbjct: 533 TMKQAVYTPVNEGHFGLAFENYTHFTSPIRRYPDLLVHRAIKRVLDKKSRKPS------- 585 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ML++G H SM ERRAD+A+RDV WLKC++M D++GN F GVIS V FG F+ Sbjct: 586 -----KKMLEIGAHLSMTERRADDASRDVEQWLKCEYMRDKIGNTFNGVISGVASFGIFI 640 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L D+F++G++ + + +DYY FD + +L GE +G+ Y+LG+ ++++V +VN+D+R++ Sbjct: 641 ELTDVFVEGMIAIRDMKDDYYIFDDIHHQLKGERTGKIYQLGNTIKIQVASVNLDDRQMA 700 Query: 722 FS 723 F Sbjct: 701 FV 702 >UniRef50_B5YKY3 Ribonuclease R n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKY3_THEYD Length = 695 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 243/707 (34%), Positives = 398/707 (56%), Gaps = 18/707 (2%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E +L+ + K +P S E++ ++ E+ + L+R L+ + G+++ R+ Y + Sbjct: 4 EEVLDFIKKSGRPLSFREISESFGLKASERKK-LKRMLKELLSQGKILRNRKGLYLTIKE 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKD-DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 L+ G H++G+GF+ + K+ D+++ +HGD+V+A+ +++ +RE R Sbjct: 63 AKLITGFFEAHKNGFGFVIPDSPKETDIFIPPHATMGAMHGDRVVARV---EQRKKREGR 119 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 IVR+L T ++VG + ++ P ++ I+I I G +V+ E+ Sbjct: 120 IVRILERATRRVVGIVEKSGPIFYIQPRKKNINQQIVIASGDIK-VNPGSLVLAEIVTYQ 178 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-VPEEAKAG 259 V KI++V ++I +E+P + + V L + + ++ Sbjct: 179 AVNKPLVAKILKVFEKPKTPKEDIEILTYEYELPKKFSKEVSNFSEELSLKGISKKQFKN 238 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 RVDLR+LP VTIDGE+A+DFDDAV +K R G + LWV IADVS+Y++ ++ +D EAR+R Sbjct: 239 RVDLRELPTVTIDGENAKDFDDAVSIKKIRNG-FILWVHIADVSHYIKWNSTIDGEARHR 297 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY P +VIPMLP LS LCSL P++ RL EM S+ G FY +++ + Sbjct: 298 GTSVYLPDRVIPMLPPELSENLCSLLPKIPRLTFTVEMHFSNSGERKESLFYPSIIQTAE 357 Query: 380 RLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+TYT V IL D++ ++Y PLV + E++ L ++L R++RG + F+ E + + Sbjct: 358 RMTYTSVKKILIDKDKEEIKRYKPLVPYFEKMAELCEILKNKRKKRGSLDFDLPEPEVLL 417 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + I + +RN AH +IEE MI AN + A F+ P+L+R+H++P T I Sbjct: 418 DIKGDPHAIIKAERNLAHFIIEEFMIAANEAVAEFLYSNNIPSLYRVHEEPETNKIQYIT 477 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 ++ LG+ +P D+ E +E + P E++ ++LRS+KQA Y EN GHFGL Sbjct: 478 RIVKNLGI---LKQDLKPSDFHEFIEIIKGTPYEEIVNYLILRSLKQARYSSENVGHFGL 534 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRYPDL +HR +K L K + + E E + + H S Sbjct: 535 ASECYTHFTSPIRRYPDLVVHRILKEFLQKGKITKERQKEL------KEILPHIAIHSSR 588 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ERRADE RD ++ FM D+VG F+G ++ VT G VRL++ +I+G +H+S + Sbjct: 589 MERRADEVERDAIQIMRVWFMKDKVGEEFEGRVTMVTPEGLRVRLEEYYIEGFLHLSHMI 648 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +D+Y+FD+ L+G + + +G ++ VRV V+++ER+I F L+ Sbjct: 649 DDFYQFDEKRYCLIGLKKKRKFTIGTKLNVRVSKVSLEEREIIFDLL 695 >UniRef50_O67834 Ribonuclease R n=6 Tax=Aquificales RepID=RNR_AQUAE Length = 705 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 258/695 (37%), Positives = 400/695 (57%), Gaps = 15/695 (2%) Query: 36 SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDG 95 ++A L + +E+ L++ +R ++++G++ + + E ++V GTVI + G Sbjct: 22 HFLQIAKALGLGKKERKT-LKKVMRKLKKEGKVKVVKGKYEYTGE--EVVTGTVIAYPGG 78 Query: 96 YGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGR 155 +GFL VEG D+Y+ +M HGD V A+ + KG++E RI++VL IV + Sbjct: 79 FGFLEVEGG-KDIYIPPFEMVKVFHGDVVKAKVT--EFKGKKEVRIIKVLKRAKKDIVAK 135 Query: 156 YFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 E +VVP D IL+ + G VVV+++TQ PT+++ A GK++EVLG Sbjct: 136 VVFEDEQCYVVPLDENAHHRILLSKKDCQKLKEGEVVVLKITQFPTKKSPARGKVIEVLG 195 Query: 216 DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGED 275 + +A+D+ +R + +P +P+ V ++V + EE+PEE R DLR+ TID E Sbjct: 196 NPKEKFIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRRDLREQLCFTIDPEK 255 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 A DFDDAV E G ++L+V IADVSYYVR T D+EA RG + YFP + + MLPE Sbjct: 256 AGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRGFTYYFPDRALHMLPE 315 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD 395 LS LCSL P D+L EM G L Y YE+V+ S ARLTY + ++ GD Sbjct: 316 KLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKARLTYNEALALIVGDPA 375 Query: 396 LREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDA 455 L +++ LV+ L + LY++L + R E G I F+ EA+ I + I +R+ A Sbjct: 376 LEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVDEYGEPTAIYPYERHVA 435 Query: 456 HKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 H++IE MI AN + A +E A P L+R+H+ P E + + +L LG ++ ++ Sbjct: 436 HRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEKVENLLEILEGLGYKVKRPHEYT 495 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPD 575 P+ + +++E RP+ +++ + LR+M +A Y P N GHFGLAL+ YAHFTSPIRRYPD Sbjct: 496 PKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLALEHYAHFTSPIRRYPD 555 Query: 576 LTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLK 635 + +HR +K L E+ Y ++ + + G H S ER ADEA + D+LK Sbjct: 556 IIVHRLLKKALRGEEI---------DYEKTLAYLEEAGNHLSKQERIADEAEMEAIDYLK 606 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 +M ++G F G+I+ V FGFFV L++ ++GLV +++L +D Y FD+ RL+G Sbjct: 607 ARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINTLTDDEYVFDEPAHRLVGVR 666 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 +G+ +RLGD V+VR AV+ + +++F LI Sbjct: 667 TGKVFRLGDHVKVRCIAVDEERARVEFELIEKLEK 701 >UniRef50_B2RHS0 Ribonuclease R n=28 Tax=Bacteroidales RepID=B2RHS0_PORG3 Length = 731 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 210/714 (29%), Positives = 348/714 (48%), Gaps = 26/714 (3%) Query: 21 REFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 R IL+ + + +++ + +E Q + + M D L R Y Sbjct: 36 RNAILDIFQSNPQSVMNYKQVSHLMGVEATPQKLMVNSLMEDMAVDDILHEIERGRYRYN 95 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 +V GT +G EG ++++ + GD+V Q R EA Sbjct: 96 ALGLIVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQLFAKRRGRAPEA 155 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 ++ ++ K + VG+ F+V +D L+ DI IP D + A+ G V+V + + Sbjct: 156 AVIEIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDNLGNAKNGDKVIVRILEW 215 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + +G++ VLG ++ L +PY++PQ VE+ L ++ EE A Sbjct: 216 PEQSKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKITEEELAR 275 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R + TID +DA+DFDDA+ + + V IADVS+YV +D+EA NR Sbjct: 276 REDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIIDQEAYNR 335 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TS+Y + IPMLPE L N LCSL P ++ C ++ + ++ Y+ +V+ S Sbjct: 336 ATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICHSVIKSDR 395 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R Y + +++ + + + +L+ L + L + R + G I+FE +E +F + Sbjct: 396 RFAYEEAQAVIETGEG------DCKEAILKLNELAQRLREERFQNGAIAFERKEVRFEID 449 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFV-----EKAKEPALFRIHDKPSTEAI 494 + R + + +A+KLIEE M+LAN + AR + K + ++RIHD P + + Sbjct: 450 EKGRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKL 509 Query: 495 TSFRSVLAELGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + G +L G N + LL+++ ++P+ ++ T+ +RSM +AIY +N Sbjct: 510 ETLSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDN 569 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+GLA Y HFTSPIRRYPDL +HR + L+ + + Sbjct: 570 IGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGSSV------------DKNDYEEK 617 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +H S E+ A A R + + +FM + +G VF GVIS VT +G +V L + +GL+ Sbjct: 618 CKHSSAMEQLAASAERASIKYKQVEFMSEHLGKVFDGVISGVTEWGLYVELKENMCEGLI 677 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + LD+DYY +D L+G Y LGD + VRV N+D +++DF +S Sbjct: 678 PIRCLDDDYYEYDDKNFCLIGRRYRHRYSLGDAITVRVAQANLDRKQLDFEPVS 731 >UniRef50_A6NVY9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVY9_9BACE Length = 710 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 349/712 (49%), Gaps = 19/712 (2%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRK---DDLYLSSEQMKTCIHGDQVLAQPLGA-- 131 A + +++ G G G+GFL E K DD ++ GD+V A P Sbjct: 2 AKKKTEEIITGVFQGTSRGFGFLVPEDGKSREDDYFIPPRATGGAWDGDKVQASPDPEIP 61 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 +GRR A +VRV + G ++ PD +L I I + G R+G Sbjct: 62 WEEGRRTATVVRVTERANRFVTGTVEKLGRELWMRPDSDKLPGPIKI-SGKAKGVRIGEK 120 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 + VE+ T +T +G + E G + L +EI +P AV A E Sbjct: 121 IAVEMLGYGTAKTPPMGALRETFGPAGNRESSTAAILYHYEIDPEFPPAVLDAAARAPRE 180 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 V ++A GR DLR+ ++TIDG ++D DDAV E+ G W L V IADVS+YV+ +P Sbjct: 181 VEKDALTGRTDLRNRIIITIDGASSKDLDDAVSLERDEQGRWVLGVHIADVSHYVQEKSP 240 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 LD EA RGTSVYF +VIPMLP LSNG+CSLNP VDRL + C MT+++ GR + Sbjct: 241 LDLEAWERGTSVYFADRVIPMLPVELSNGICSLNPGVDRLTISCFMTLAADGREEDHTIC 300 Query: 372 EAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V+ S R+TY +L G D DL ++Y ++ L ++ L +VL+K R+ RG + E Sbjct: 301 KSVIRSTERMTYEDCNKLLAGEDPDLEKRYNNILPMLRDMAVLARVLEKRRKLRGSLDLE 360 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 + E+ I + + I+ ++ ++ LIE M+ AN AR + +PA++R+H+KPS Sbjct: 361 TSESYIICDEHGKPVDIKVRKQGESEALIESFMLAANECVARHLFDRHKPAVYRVHEKPS 420 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + +++LA G + ++LE +P+A ++ TM+LRS+ +A YD Sbjct: 421 QDKAEGLKTMLAPFGYTFQEADSF---ALQKILEDTKGKPEAPIISTMVLRSLMKARYDV 477 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 +N GHFGLA + Y HFTSPIRRYPDL +HR + +LA E Sbjct: 478 QNLGHFGLAAKYYCHFTSPIRRYPDLMVHRVLTQVLADEANPANVGKTMPWEKRMASVAA 537 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + S E A A R++ ++ML VG G +S VT FG FV L ++G Sbjct: 538 RAADQSSQREVAAQNAEREIEKLYMAEYMLAHVGETMVGTVSGVTKFGLFVMLP-SGVEG 596 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 L+ +L D+Y D L GE +G+ + G + V A + +I F L E Sbjct: 597 LISAEALPRDHYHHDDQRMTLRGEHTGRVFSFGMPLTVVCAAADPGSGQITFHLSGEEPE 656 Query: 731 P--------RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKK 774 R + ++ + + + +R+ ++ +G K+ Sbjct: 657 AVPERPETLRQGHRHPGPRSARRNGEHRSNERKNGERRSRPPRHKPGKGGKR 708 >UniRef50_Q01VX0 RNAse R n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VX0_SOLUE Length = 762 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 258/770 (33%), Positives = 401/770 (52%), Gaps = 67/770 (8%) Query: 24 ILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE-R 81 I+ H+++ A+ +L E+ ++G ++ + L L + G+L+ R Y + Sbjct: 6 IVAHISRLPHARANFKQLVREMGLKGAKR-DELDTALDRLVARGELIELRSGEYTVTSLS 64 Query: 82 LDLVKGTVIGHRDGYGFLRVEGR----KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + V G + HRDGYGFL + + D+++ + +HGD+VL + + GR Sbjct: 65 REFVVGRLNLHRDGYGFLIADRQIPRVVGDIFIPPDSASQAMHGDRVLVRIARIEPDGRA 124 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD---------------- 181 + IV+VL + +VG + +VVP D RL + IP Sbjct: 125 DGNIVKVLKRAHATVVGEFKIGRRGCYVVPHDERLQQWVDIPEGMEFPPAGASVDRIGVT 184 Query: 182 ----QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 + G +V VE+ + R VG++VE+LG G+ V+I +R H +P+ + Sbjct: 185 APKVATVEQLDGMIVNVEIMEYAGRGESPVGRVVEILGHPDDFGVDVEIVIRKHHLPHQF 244 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 P V +Q + +P GR D R + +VTIDGE ARDFDDAV+ +K G + L V Sbjct: 245 PPEVIEQAQAIPGVIPPAEFEGRRDFRGMDIVTIDGETARDFDDAVWVDKLPSGNYVLHV 304 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADVS+YVRP TP+DREA RGTSVYFP + +PMLP LS LCSL P DRL + M Sbjct: 305 HIADVSHYVRPGTPIDREALLRGTSVYFPDRAVPMLPFELSTNLCSLVPLEDRLVLSALM 364 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 + +G + +F E V+ S AR+TYT V +L+GDQ LRE+Y PLV E + L VL Sbjct: 365 EIDHRGEVVRQEFTEGVIRSVARMTYTNVHKLLEGDQVLRERYKPLVPRFELMQELALVL 424 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 ++ R RG I F+ E F+ + + + RN A++LIEE M+ AN S A +E A Sbjct: 425 NRKRVRRGSIDFDLPEPLIEFDDLGAMIGVTRAPRNIANRLIEEFMLAANESVAGHLENA 484 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGG-------------------------- 511 +++RIH+KP + + F V A G+ L G Sbjct: 485 GIASIYRIHEKPDPKRVMEFEEVAAHFGVSLGVGAIEVKRFKVTDKRRDGTKKQQAIVLA 544 Query: 512 --NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSP 569 R Y +L+ + +P+ +L ++LRS++QA Y EN GHF LA +Y HFTSP Sbjct: 545 DNTNINSRHYQKLVAKIEGKPEERILSFLMLRSLRQARYSTENTGHFALAADTYTHFTSP 604 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPDL +HR ++ +L + E+ + CS +ERRA +A R+ Sbjct: 605 IRRYPDLIVHRLLRAVLLGKPTP------------DESELGPIADDCSQSERRAADAERE 652 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + +W K FM D+VG F ++ S T +G FV L +LFI+GLV + +L +D Y + + + Sbjct: 653 LVEWKKVKFMADRVGEDFDALVISTTKYGLFVELTNLFIEGLVPIDTLPDDQYTYQENVR 712 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAR 739 +++G+ + + + +GD++ V ++ ++ ++RK+ FS+ + R Sbjct: 713 KVVGKRTRRQFSIGDKLRVVLDRIDANDRKLQFSIFEVVPQRTKQKRRPR 762 >UniRef50_Q1J171 Ribonuclease R n=3 Tax=Deinococcus RepID=Q1J171_DEIGD Length = 1182 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 255/818 (31%), Positives = 404/818 (49%), Gaps = 38/818 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQL---EGLRRRLRAMERDGQLVFTRRQC 75 P+RE ++ L K +P +L + ++L L L + R G+++ TRR+ Sbjct: 252 PARELVIAQLRKLGRPIHVRDLERTFTRQMLDRLGGWRDLEALLDDLTRTGEVIRTRRRT 311 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 Y LPE + LV+G G+GF+ + +D Y++ E +GD VL + G G Sbjct: 312 YGLPEAMSLVRGRFQASPTGFGFVIPDAGGEDFYVAPEDTLEAWNGDTVLVRMEGRGDSG 371 Query: 136 R-------------REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 R A + R++ +VG G + DD R IL+ P+ Sbjct: 372 RSPGPRRGQRGDGSPRASVARIVQRAYRHLVGTLEFSKGHPILKADDPRARHRILLLPEG 431 Query: 183 IMGARMGFVVVVELTQRPT--RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 + G G VV EL P + G+++ VLG+ + + + + +P Sbjct: 432 LEGLASGARVVAEL-YWPEQTGEDEVFGQVIRVLGEQDDPATETEAVIVKYGLRGEFPAD 490 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ + +P E+ GR+DLR+ + T+DG DA+DFDDA++ + G + + V IA Sbjct: 491 VLEEANAIPTRIPPESLVGRLDLREFNIFTVDGRDAKDFDDAIHIQPTPEGTFVVGVHIA 550 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS+YVR TPLD+EA R TSVY P +V+PMLPE LSNG+CSL P DRL + + +S Sbjct: 551 DVSHYVREGTPLDQEAYARATSVYLPGRVLPMLPEHLSNGVCSLVPFEDRLTVTALIELS 610 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 ++G + K +V++S ARLTY +V + L E L L L + L + Sbjct: 611 AEGDILDVKLAPSVINSKARLTYDEVQAYSEATSTLPEHARHLEGDLHLLLKITSKLRQK 670 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R G + F+ E K + R+E I + A +IE+ M+LAN A ++ + P Sbjct: 671 RLREGSLDFKLREVKVDVGPDGRMELIPIHEET-ARGMIEDLMLLANKVVAHYLIERGIP 729 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 LFRIH++P+ + + +A LGL PGG +P P+ Y +L++V P ++ T+LL Sbjct: 730 TLFRIHEEPTLQRFQEATAAIARLGLAFPGG-EPTPQAYQAVLKAVRGTPRESVVNTLLL 788 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 RS++QA Y EN GHFGLA Y HFTSPIRRYPDL +HR +K +L+ + Sbjct: 789 RSLQQAKYAGENLGHFGLAFAEYLHFTSPIRRYPDLFVHRVLKAVLSGDLKAGSRAVAE- 847 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 ++ +G H S ER+A EA RD+ + + + + +G F G ++ V G F Sbjct: 848 ----LRSQLPAMGDHTSERERKAAEAERDLTKYYQAKWAQEHLGERFSGNVTGVVSSGLF 903 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V LD+ ++G +H+S+LD+DYY + + Q L G S G+T+RLGD + V + VN R+I Sbjct: 904 VALDN-GVEGKLHISNLDDDYYIYLEDAQMLRGRSGGRTFRLGDPITVTISQVNPLARQI 962 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKK------ 774 DF+ + + + + ++RQ + VN P F + Sbjct: 963 DFT-----QENDMDSNDNTARPRARRREDREAEKRQKLQSVNPAPPRKFTLDDPQPAVPS 1017 Query: 775 TKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812 P+ + + + + + A RA ++ Sbjct: 1018 APPRQSGQGRGGRGQGQREGSQREANPSGGRAPLRQSG 1055 >UniRef50_C3J9M7 Ribonuclease R n=2 Tax=Bacteria RepID=C3J9M7_9PORP Length = 736 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 212/716 (29%), Positives = 353/716 (49%), Gaps = 30/716 (4%) Query: 22 EFILEHLTKREKPA-SRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I+++ T+ + + +A L + + + R L ++ G L Y Sbjct: 40 DSIIDYFTRHPREVVNYKAVAASLGFTTMSEKQFVVRTLESLVEQGMLTQVEIGRYRYQV 99 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQ-MKTCIHGDQVLAQPLGADRKGRREA 139 ++++G R Y + + ++ +S + + GD+V + R Sbjct: 100 GGEMLEGVFE-SRRNYCVVVPDDESAEVIVSDRNNPEHALPGDRVRVALFPLKARRTRTG 158 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 ++V VL + S VGR G ++ +D L IL+P + + GA+ +V + Sbjct: 159 QVVEVLQRRRSTYVGRVVVTKGFSYLHTEDRALDSRILLPREALAGAKNNDKAIVRIAHW 218 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 R + G++VEVLG + L +++PY +P+ E+ + E+P E A Sbjct: 219 GAREPEPTGEVVEVLGAAGDNNTEMHAILAEYDLPYSYPEEAEEAARQIPSEIPSEEMAK 278 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R D R++ +TID DA+DFDDA+ K GG + V IADVSYYV P + +D+EA +R Sbjct: 279 REDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGSVIDKEAYDR 338 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 TS+Y + IPMLPE L N LCSL P RL C ++ + Y+ ++ S+ Sbjct: 339 ATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQSYRIGRTIIESNR 398 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R Y + ++ + + + LH+L ++L K R +G I+F S+E +F+ + Sbjct: 399 RYAYEEAQQVIDTKEGDD------AEVILSLHSLAQLLRKRRFAQGAINFSSQEVQFVLD 452 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK-------EPALFRIHDKPSTE 492 AE R + A++LIEE M+LAN + A K + + ++RIHD P + Sbjct: 453 AEGRPVDVMARPHGTANELIEEFMLLANRTVATEFGKKQRNSNGDAKTFIYRIHDLPDGD 512 Query: 493 AITSFRSVLAELGLELPGGNKPE--PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + + + G + + ++ ++E+ D+P+A ++QTM +R+M +A Y Sbjct: 513 KLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQDKPEATLIQTMAVRTMARAEYST 572 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 EN GH+GLA + Y HFTSPIRRYPDL +HR + +A E E Sbjct: 573 ENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSVP------------QAEYE 620 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 QHCS E+ A +A RD + + ++M ++G VF GVIS+V +GF+V L +G Sbjct: 621 AYAQHCSDQEQVAAKAERDSVRYKQVEYMSTRLGKVFDGVISNVAEWGFYVELTHSHCEG 680 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 LV + L++D+Y +D+ L+G + + LGD V VR + + R+IDF L+ Sbjct: 681 LVPMRLLNDDFYDYDEKNFALVGRRYRRKFTLGDTVRVRAIHSDFERRQIDFELVD 736 >UniRef50_Q1Q6K5 Similar to ribonuclease R n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6K5_9BACT Length = 730 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 242/725 (33%), Positives = 396/725 (54%), Gaps = 20/725 (2%) Query: 24 ILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I++ + K+ P + ELA + E+ + L+ +E G++V +R+ YA P+++ Sbjct: 7 IIQFIHSKKYTPMTAAELAEHFEVND-EEYRAFCKLLQDLEFQGEIVKIKRKQYANPKKV 65 Query: 83 DLVKGTVIGHRDGYGFLRV--EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR------- 133 +L+ GT+ + G+GF+ +G D++++ E M + +HGD V+ + ++ Sbjct: 66 NLLVGTMDCNSRGFGFVVPAKKGEGKDIFVNEENMNSAMHGDIVVVRLPDLEQIPKRGKK 125 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 KG +IV VL IVG + + +VVPD++RL D+ + A G VV Sbjct: 126 KGGGSGQIVNVLKRANPFIVGTFKKSKRLLYVVPDNARLFRDVYVTEGDAKDATPGDKVV 185 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 V++ Q P+R G+I E+LG + + + ++P + + V + + +E+P Sbjct: 186 VKIVQWPSRHLNPEGEITEILGKEGDPKVDLHSIIYQFKLPQAFHKKVSNEAEKISQEIP 245 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E R+DLR ++TID +DA+DFDDA+ EK G W+L V IADVSYYV+ + +D Sbjct: 246 QEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGVHIADVSYYVKQDSAID 305 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EAR RGTSVY P +VIPMLPE LSN LCSL DRL +T+ +G + + Sbjct: 306 KEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLVTIDPEGNILKSTVKHS 365 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++ RLTY + I+ ++ + L EL L ++L K + RG I + E Sbjct: 366 VINVTKRLTYKQATAII-NNESAGNIPEMVKDVLVELAQLAQILFKNKMNRGAIELDLPE 424 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 + E IE++E+ +R+ +H+L+EECM+LAN A F+ K K P + R+H +P E Sbjct: 425 VSLKLDEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFMHKNKLPLISRVHPEPDEED 484 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + F + GLE + + L + +P+A M+ +LL+SMKQA+Y Sbjct: 485 MLEFADFVR--GLENTRVDPFKIHQLQAFLAEIRGKPEAHMVNLVLLKSMKQAVYSATES 542 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHF LAL++YAHFTSPIRRYPDL +HR + + E + + Sbjct: 543 GHFALALENYAHFTSPIRRYPDLIIHRTLDQHFSGE------LRSPVIQKMWENCLPEWA 596 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 HCS+ ERRA+EA R++ F ++VG+ F+GVI+ V +GFFV+L + ++GLVH Sbjct: 597 GHCSVTERRAEEAEREITKLKLLRFFENRVGDNFEGVITGVQEYGFFVQLSEYLLEGLVH 656 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 + +L++D Y+ + L+G + +R+GD V+V++ +++ +R++DF + + Sbjct: 657 IRTLEDDIYQISKKHMALVGTRRKKMFRVGDVVKVKIYKIDLLKREVDFIPYENRNEKPH 716 Query: 734 VGKTA 738 GKT Sbjct: 717 RGKTR 721 >UniRef50_D2MM97 Ribonuclease R n=1 Tax=Bulleidia extructa W1219 RepID=D2MM97_9FIRM Length = 759 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 240/769 (31%), Positives = 392/769 (50%), Gaps = 21/769 (2%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + IL +L + + L + L L ME++ + R + Sbjct: 5 EKRILRYLQTEPRYKHTISHLLESFGMTSSADFIRLNHVLEKMEQEYFIFRNARNEFLTQ 64 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 + +++G + +R G GF+ +E KD + + + T ++GD VL Q L A Sbjct: 65 SQAKVIEGRLSVNRMGVGFVDIED-KDSYRIEAPDLATAMNGDLVLIQALKIL----PFA 119 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS-FDILIPPDQIMGARMGFVVVVELTQ 198 +++ + +VG FT+ ++ DD RL + + + G VV +T+ Sbjct: 120 KVIAIKERAKDTVVGTIFTKGKKVYLGLDDERLKERKVRLSYSKDFLPIDGLKVVGHITR 179 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 +++V+G G + L HEIP +P+ V +++ + +EV Sbjct: 180 YG---DPLDVTVLKVIGHKDDPGTDIASILVDHEIPLEFPEEVLEELKSISQEVHPSQFI 236 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 GR DLR+ VTIDG+ ++DFDDAV EK G + LWV+IADVS YV+ +T LD+EA+ Sbjct: 237 GRKDLRNQIFVTIDGDSSKDFDDAVSVEKDENG-YHLWVSIADVSSYVQENTALDQEAQQ 295 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R S Y +V+PMLP LSNG+CSLNPQVDRL + CEM +S +G + Y Y +V+ S Sbjct: 296 RSFSTYVVDRVVPMLPHELSNGICSLNPQVDRLTLTCEMQISKQGEIVSYDVYPSVICSK 355 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 R+TY KV IL G++ + ++YA + E L + + R ++G I+FE E Sbjct: 356 RRMTYNKVNQILIGNESVIQEYADMGNFFEVLLDCADAIRHQRVDKGAINFEHPETGIDL 415 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + I QR A ++IE+CMI+AN+S A+++++ P ++R+H++PS + + +R Sbjct: 416 DERGKPIHIYPKQRGVAEEIIEDCMIVANVSVAKYLKEYGIPGIYRVHEEPSAKRLKEYR 475 Query: 499 SVLAELGLELP-GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 + LG + +P+D + L S+ D A +L M+LR+M++A YD + GHFG Sbjct: 476 HLAEILGKPFTLKTSNVQPKDVQQFLTSIQDENSAPILNMMMLRTMQKARYDIRDIGHFG 535 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Q Y HFTSPIRRYPDL +HR + + E + + + +H S Sbjct: 536 LAEQDYLHFTSPIRRYPDLIVHRMLWKYMFGE-------NQKKDKDWDNRRNREFAEHAS 588 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 + ER +A D K ++M D +G F G+I+ VT FGFFV+L++ ++GLV S+ Sbjct: 589 IQERNCSDAEYACLDMKKAEYMQDHLGEYFDGIITGVTHFGFFVQLENT-VEGLVQTRSI 647 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 DYY F + L+G+ +G YR+G V+V+V A N + +DF L+ + ++ + Sbjct: 648 PGDYYLFHEDRSELVGKRNGVVYRVGQSVKVKVVAANKQKGNVDFELVLPRQKGQDF-RL 706 Query: 738 AREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK 786 + + K + S + +K+ + AKK +K Sbjct: 707 KKNLERHKREEKSFSYWDNPRDRKFKFHSSPPKRKKEKRESFAKKRRKK 755 >UniRef50_B9XG02 Ribonuclease R n=2 Tax=Verrucomicrobiales RepID=B9XG02_9BACT Length = 740 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 231/761 (30%), Positives = 387/761 (50%), Gaps = 36/761 (4%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + IL+ + + P + +L L + + + +RL +ER+G++ + + LP Sbjct: 2 EDKILKLFGQPDYTPINISQLMRRLKLAPND-KPEVEKRLARLEREGRIARIKGNRFILP 60 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 + DL+ G + +R G GFL + K + + T + D+VL + R R Sbjct: 61 QEADLIPGRIRINRQGKGFLEADDPKLPTIVVPEHATGTAFNNDRVLVRRDVRYRGRSRI 120 Query: 138 -----EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM--GF 190 +++R+L + +Q+VG + + +V+PDD R+ DI + + +G R G Sbjct: 121 FQEEETGKVIRILERERTQLVGTFQSSNRFLYVIPDDPRIPHDIYVTEPRDVGRRPNLGD 180 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VVVEL +R G+I+EVLG G+ + LR + +P +P+ V Q+ + Sbjct: 181 KVVVELKLWESRELNPEGEIIEVLGAPDEEGVDMLSVLRQYNLPLHFPKTVLQEAHAIGN 240 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 ++ E AGR D R +VTID DA+DFDDA+ E G W+LWV IADVS+YV+ + Sbjct: 241 QIDERDIAGREDCRAHTVVTIDPVDAKDFDDAICLEAAPNGHWKLWVHIADVSHYVKVGS 300 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD EA+ RG S Y +VIPMLPE LSN LCSL P V+RL E +S++G++ +F Sbjct: 301 ALDEEAQKRGNSTYLVDRVIPMLPEALSNELCSLKPGVERLTKCVEFLLSAEGKVIRSRF 360 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 Y AV+ S R TY +V LQ P+ + L + + + L +AR + G + + Sbjct: 361 YPAVIHSKRRFTYEEVLEALQRKPA-----GPIEEMLHHANTMAQRLRRARMQAGSLDLD 415 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 E+K + + +I RI++ + + +H+LIEE M+LAN + A + ++RIH+ P Sbjct: 416 FPESKIRLDEQGKILRIDRVENDISHQLIEEYMLLANEAVAGKLMALDRQTVYRIHEPPD 475 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + + FR L ++ GN + +LL+ + P L+ L+S+ +A Y Sbjct: 476 DKRLQEFRE--DVLSHQIQCGNLTNRHEVQKLLQKLNSLPIGPALKIGFLKSLMRARYAV 533 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 E GH+GLA Y HFTSPIRRY DL +HR++ + G + E + Sbjct: 534 EPLGHYGLAKAKYTHFTSPIRRYADLVVHRSL--------------FQKGREKVAAESLR 579 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQV----GNVFKGVISSVTGFGFFVRLDDL 666 + +H S ER + +A RD D ++ Q+ + G+++ V FGFFV + L Sbjct: 580 NVAEHISDTERNSADAERDSKDVKLFAYLQSQLDSGRPQRYPGLVTDVRNFGFFVDVPGL 639 Query: 667 FIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + G+V +S+L +D+++FD +L+G S + ++LGD+VEV++ V+ ++++DF L Sbjct: 640 GMSGVVPLSTLPDDFFQFDSNRNQLIGRRSRRVFKLGDKVEVQIHKVDKFKKQVDFRLAG 699 Query: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDS 767 ER + + + K + + ++ Sbjct: 700 PERKELPRKEVPKYERPKPQIQRLERPQFKLSYSSRRAKRR 740 >UniRef50_C7PAC9 Ribonuclease R n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAC9_CHIPD Length = 705 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 220/721 (30%), Positives = 360/721 (49%), Gaps = 29/721 (4%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 +++ + +GTV R G F+ +EG++ D+ + + + T + GD+VL + Sbjct: 4 KKKPQKHSSQKKTFRGTVQITRSGMSFVIIEGQEKDVMVRQKNLNTALDGDEVLVDVIKQ 63 Query: 132 DR-KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 + +GR E I ++ K + G G F++P+ DI IP + + A+ G Sbjct: 64 GKNEGRMEGVITEIIKRKKIEFTGSLQVNKGFAFLIPEKGLFMPDIYIPANSLKDAKNGD 123 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VV + + K VG++VEVL + +A+ L P +P V +++ ++E Sbjct: 124 KAVVRVVAWGEKTRKPVGEVVEVLDASNTNDLAMKEILIESGFPLSFPDEVLKELNEIQE 183 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + E R D R TID DA+DFDDA+ K RG + + V IADVS+YV+P T Sbjct: 184 NIDAEEVKKRKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQPDT 243 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 LD+EA R TSVY P +V+PMLPE +SN LCSL P D+L ++ KG + Sbjct: 244 ALDKEADKRATSVYLPDRVLPMLPEKISNELCSLRPHEDKLTFSAVFKMNDKGEIKENWI 303 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 V+ S R TY +V +++ + P + L+ + + L K R E G I+F Sbjct: 304 GRTVIHSDHRFTYEQVQEVIETGEG------PYKDEVLLLNKISQTLRKVRFENGAINFS 357 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE------KAKEPALFR 484 S+E +F + + I + +AH+LIEE M+LAN + A +V P +R Sbjct: 358 SQEVRFQLDENAKPIGIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVPFPYR 417 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 +HD P E + F + + G +L N + R + E+L+ +P+ +L+T+ +R+M Sbjct: 418 VHDTPDEEKLKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLGIRTM 477 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 +A Y ++ GH+GL + Y HFTSPIRRYPD+ +HR ++ L+ + Sbjct: 478 AKAAYTTDDIGHYGLGFEHYCHFTSPIRRYPDVLVHRVLQQCLSHD-------------I 524 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + ++M + +H S ER+A EA R + + ++M +G F GV+S V FGF+V Sbjct: 525 HPDKQMEKKCKHSSEMERKAMEAERAANKYKQVEYMQQYIGEEFDGVVSGVAHFGFWVET 584 Query: 664 DDLFIDGLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 D +GLV + S+ D + +D+ L+G +G+ R+GD+V ++V A N+ +R++D+ Sbjct: 585 VDTKCEGLVSIHSMSTKDEFVYDEQEYSLVGSFTGRKIRIGDKVRIQVVAANLVKRQLDY 644 Query: 723 SLISSER-APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 L+ E AP A+K KK + + KK G+K K Sbjct: 645 DLVEPEGSAPDIFAGGRGRSARKPATDKKTSRAPKDKKKETSSKKKPASGKKPGSSSRKK 704 Query: 782 K 782 Sbjct: 705 S 705 >UniRef50_C2KYI7 Ribonuclease R n=1 Tax=Oribacterium sinus F0268 RepID=C2KYI7_9FIRM Length = 745 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 243/743 (32%), Positives = 384/743 (51%), Gaps = 43/743 (5%) Query: 9 REAEKYANPIPSREFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 RE ++ ++ IL+ + P EL L + E+ + L M+ +G Sbjct: 2 REEQREK----LKKIILDLIKDPSYHPMKEKELCFFLGVPK-EEKAAFQEILMEMQEEGV 56 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ 127 + + + Y+ E KGT +R G+GF+ + +++D+Y+ + + GD V Sbjct: 57 IGISLQGKYSRAESFSQ-KGTFHANRRGFGFVSLSEKEEDVYIPKGEAGNAMDGDLVKVI 115 Query: 128 PLGADRKG-RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA 186 G + E +I +VL +++G + ++ PD+ +L ILI P + GA Sbjct: 116 LTKKSENGSKAEGKISKVLERANKEVLGLVKEKREGLYLSPDNPKLPDCILISPGRDKGA 175 Query: 187 RMGFVVVVELTQRPTRRTK------------------AVGKIVEVLGDNMGTGMAVDIAL 228 G VV+E+ + VG++ E+LG GM V + Sbjct: 176 VPGDKVVLEILSYGPSKENKAPRGRIPRKRISPLLSCPVGEVKEILGHKDDPGMDVLSVI 235 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEE--AKAGRVDLRDLPLVTIDGEDARDFDDAVYCE 286 R+ +P +P+ V + L V E + GR D R L +TIDGEDA+D DDA+ + Sbjct: 236 RSFSLPEEFPEDVLLEANQLPNAVSPEKAEETGRKDFRKLTTITIDGEDAKDLDDAISLD 295 Query: 287 KKRG-GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 +RL+V IADVS YV+ + LD EA RGTSVY +VIPMLP+ LSNG+CSL+ Sbjct: 296 YFPEKEEYRLYVHIADVSDYVKEGSALDLEALERGTSVYLTDRVIPMLPKALSNGICSLH 355 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ----YA 401 VDRLC+ C M +GR ++ +++ S+ R++Y KV +L+ + + Y Sbjct: 356 EGVDRLCLSCIMDFDREGRPLSHEITPSIICSNKRMSYHKVTALLEDKEWEDPEEKLSYL 415 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 P + L ++ L ++L K+R RG + F+ E+K F+ I +I +R ++HK+IEE Sbjct: 416 PFHELLTKMRELARLLRKSRMARGALDFDFPESKVYFDENGNISKICAEEREESHKIIEE 475 Query: 462 CMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG--GNKPEPRDY 519 M++AN + A P L+RIH+KP E + VL+ L + P+ Sbjct: 476 FMLIANETVAEEYYWRDIPFLYRIHEKPDWEKWQNLSHVLSSFSYSLKAKDPDNLRPKAL 535 Query: 520 AELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 ELL + +P+ ML +M+LRS+KQA Y E GHFGLA + Y+HFTSPIRRYPDL +H Sbjct: 536 QELLSKLKGKPEEAMLSSMILRSLKQAKYSTEPEGHFGLASKYYSHFTSPIRRYPDLQIH 595 Query: 580 RAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM 639 R IK +A ++ + + + + S+ ERRA+EA RD KC +M Sbjct: 596 RIIKENIAYQENEKRRR-------HYERILPDVASQSSLRERRAEEAERDCMKLKKCQYM 648 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 + +G VF G IS +T +G +V L++ I+G++ + + DYY F++ L GE+SG+T Sbjct: 649 KNFLGEVFPGRISGLTQYGIYVTLENS-IEGMIPLRFMTEDYYIFNEEEISLRGEASGKT 707 Query: 700 YRLGDRVEVRVEAVNMDERKIDF 722 + +GD + + V AV+ R IDF Sbjct: 708 FHMGDPMWISVYAVDTLSRSIDF 730 >UniRef50_Q1IJI5 Ribonuclease R n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJI5_ACIBL Length = 827 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 279/826 (33%), Positives = 438/826 (53%), Gaps = 109/826 (13%) Query: 22 EFILEHL-TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + IL+H+ + + A+ +L E+ + G ++ + L RRL ++ + G+LV YA+ + Sbjct: 5 QQILDHIERQAHQSANFKQLVREMRLRGPDR-DQLGRRLESLVKRGKLVTAAAGRYAMVK 63 Query: 81 ---RLDLVKGTVIGHRDGYGFLRV------EGRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 +L+ G + HRDGYGF+ + D+Y+ + + +HGD+VLA+ + Sbjct: 64 TTRAQNLIAGKLSMHRDGYGFVMPGAAEVKSAIEGDIYIPPHAIGSAMHGDEVLAEIVAT 123 Query: 132 DRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP----------- 180 + GR E RI+R L + +VG + + V FV P D +++ DI+IP Sbjct: 124 KKDGRAEGRILRTLNRAHTSVVGTFHYDK-VNFVRPIDEKITQDIVIPKGMEWPPDVERE 182 Query: 181 --DQIMGARMGFVVV------------------VELTQRPTRRTKAVGKIVEVLGDNMGT 220 ++ V+ VE+T+ P+ G++VE+LG Sbjct: 183 EGEKRKKRSEQDRVIGTEAKRREWTDLDNLVVNVEITEWPSPTQSPRGRVVEILGYEDDF 242 Query: 221 GMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFD 280 G+ +I +R H +P+ +P AV + E+P + R D R+LP+VTIDGE ARDFD Sbjct: 243 GVDTEIMIRKHHLPHQFPAAVLSEARSFSPEIPAKEIKHRRDYRELPIVTIDGETARDFD 302 Query: 281 DAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNG 340 DAV G + L V IADV++YV + +D EAR RGTSVYFP + +PMLP LS Sbjct: 303 DAVLVSHLPNGNFELQVHIADVAHYVTDESDIDLEARLRGTSVYFPDRAVPMLPLELSTD 362 Query: 341 LCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY 400 +CSL PQV+RL + C M + +G + GY+ E V+ S R+TYT V +LQGD +LR +Y Sbjct: 363 ICSLRPQVERLVLSCVMEIDHQGEIVGYELNEGVIRSAERMTYTAVHGVLQGDTELRTRY 422 Query: 401 APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIE 460 APLVK+ E + +L +L+K R++RG I F+ E F+ ++ + +++RN+AH+LIE Sbjct: 423 APLVKNFELMRDLASILNKKRQKRGSIDFDLPEPVIEFDENGLMKGVTRSERNEAHRLIE 482 Query: 461 ECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP------ 514 E M+ AN S A ++E K +L+RIH+KP + + F ++ A G L G+ P Sbjct: 483 EFMLAANESVATYLEARKIASLYRIHEKPDPKRVYEFETLAASFGYSLGVGSLPIERVHL 542 Query: 515 -------------------------EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 PR Y +L + + +P+ +L ++LRS++QA Y Sbjct: 543 KADKRARHGTGRRSEPIEIPKDVHITPRMYQKLTQKLEGKPEERILSYLMLRSLRQARYS 602 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL----------------------- 586 +N GHF LA SY HFTSPIRRYPDL +HR +K +L Sbjct: 603 EKNEGHFALAATSYTHFTSPIRRYPDLIVHRILKQVLKEQAEKNDHGVPVGVGGAVNEVD 662 Query: 587 -------AKEQGHQGNTTETGGYHYS----MEEMLQLGQHCSMAERRADEATRDVADWLK 635 +G + E++ Q+ + S AERRAD+A R++ +W K Sbjct: 663 GHSPWSKRDGHERKGKQQHEDRPPLTGPIPEEQLRQIAEESSDAERRADDAERELLEWKK 722 Query: 636 CDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGES 695 FM D+VG F G+I SVT +G FV L DLF++GLV + +L D++ + + ++L+GE Sbjct: 723 IKFMQDRVGEEFTGLIVSVTKYGLFVELTDLFVEGLVPLLTLQGDHFNYHENTKQLIGER 782 Query: 696 SGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 S +TY LGD+V V ++ ++ +RK+ F+++ E R GK + + Sbjct: 783 SRKTYSLGDKVRVILDRIDRMQRKLQFAVVEDEPH-RAEGKHKKSR 827 >UniRef50_C1F8V5 Ribonuclease R n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F8V5_ACIC5 Length = 920 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 293/892 (32%), Positives = 438/892 (49%), Gaps = 108/892 (12%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 + RE + + A L L + G + L L + G+LV ++ +A Sbjct: 1 MTDRELLRHIERSPGQRAGYKHLVRILGLGGGRERRLLLEHLSRLTAAGRLVKVDKEHWA 60 Query: 78 LPERL----DLVKGTVIGHRDGYGFLRVE--GRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 L + +LV G + HRDGYGF+R D+++ ++ T + GDQVL + Sbjct: 61 LAQAAHSRDNLVAGRLDLHRDGYGFVRPAQRDAAGDIFIPPNEIGTAMQGDQVLVEVFPK 120 Query: 132 -DRKGRREARIVRVLVPKTSQIVGRYF-------------------TEAGVGFVVPDDSR 171 + R RIVRVL + +VG++ + +VVP D R Sbjct: 121 RPGEDRMAGRIVRVLTRRNPTVVGKFHYGNVGGNAGGGRRGGRERGPQYPGHYVVPFDER 180 Query: 172 LSFDILIPPDQIM--------------------GARMGFVVVVELTQRPTRRTKAVGKIV 211 ++ ++IP D+ + G VV VE+T+ PT A G+++ Sbjct: 181 MTQPVIIPLDEPLPEAVVASPHRVLGEEVRQQFDDLEGLVVDVEITEWPTPTRPARGRVI 240 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 EVLG+ G+ V++ +R H +P+++P+ V + + + E A R D RDLP+VTI Sbjct: 241 EVLGEEDAFGVDVEMMIRKHHLPHVFPENVLAEAREVA-HLDGEVVAARRDFRDLPIVTI 299 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 DGE ARDFDDAV + G W L V IADV+ YV P + LD EAR RGTSVYFP + IP Sbjct: 300 DGETARDFDDAVLVREHGDGTWELQVHIADVAQYVTPESALDLEARLRGTSVYFPDRAIP 359 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLP+ LS +CSL P DRL + C M + + G++TGY+ E V+ S R+TYT+V IL Sbjct: 360 MLPQELSTDICSLRPGEDRLVLSCLMQMDAHGQVTGYEVTEGVIRSAQRMTYTQVQAILD 419 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 GD + R+ + PLV E ++ L ++L+ RE RG I F+ E F+ ++ + + + Sbjct: 420 GDAETRDAFRPLVPEFERMYRLAQILNAKRERRGSIDFDLPEPVIEFDEFGAMKAVTRAE 479 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 R A++LIEE M+ AN A ++E PA++RIH+KP + F + A G L G Sbjct: 480 RLWANRLIEEFMLSANECVASWLENLAVPAIYRIHEKPEPRRVVEFEEIAASFGYSLGIG 539 Query: 512 NKP-----------------------------------EPRDYAELLESVADRPDAEMLQ 536 N P P+ Y +L +A +P+ ++ Sbjct: 540 NLPVKRFHTRGERRDQRRDGRGGRRETRAHEVAEDIAVTPQMYQKLTAKLAGKPEERIVA 599 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLA--------- 587 ++LRS+KQA Y +N GHF LA +Y HFTSPIRRYPDL +HR K LL Sbjct: 600 YLMLRSLKQARYSEKNEGHFALAAPAYTHFTSPIRRYPDLMVHRIAKALLEAGVDGHGVV 659 Query: 588 -------KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 + + E+ + Q S ERRA EA R++ +W K FM Sbjct: 660 AMGDARVHKVAPSDAGQAQEAAPFDEVELAAIAQETSDTERRAAEAERELVEWKKIKFMR 719 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS---LDNDYYRFDQVGQRLMGESSG 697 D+VG F G+I S T +G FV L+DLFI+GLV + S LD D Y + + + ++G+ G Sbjct: 720 DRVGEDFDGLILSATKYGLFVELEDLFIEGLVPIQSLGALDGDRYSYRENTREIIGDGHG 779 Query: 698 QTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 +T+R+G RV V ++ V+ E+++ FS++ E + + K K G + Sbjct: 780 RTFRIGQRVRVLLDRVDAMEKRLQFSILLDEEEATAA---RKPRGKSAGKSKSAGHSKTG 836 Query: 758 GKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809 KK + S + E+ + KK RK K+ SA A AKR A+ Sbjct: 837 AKKTHAAAASERKAERPARTANPKKSGRKKKRFSAD----AVPDFAKRVAQP 884 >UniRef50_C6HZ06 Ribonuclease R n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZ06_9BACT Length = 759 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 232/737 (31%), Positives = 351/737 (47%), Gaps = 28/737 (3%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELA--VELHIEGEEQLEGLRRRLRAMERDGQLVF 70 +P R+ IL+ + + E+ L + + + + + ++V Sbjct: 24 PPDSPSAWRDRILQTMADSPEHILSLEILLRRLLSKKDRARRPDAQEAIDRLVLSHEVVR 83 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG 130 ALP+RL + G + ++DGYGF+ K D+++ + + I GD V+ G Sbjct: 84 LPDSRLALPDRLPRLTGRLEANKDGYGFVIDPEGKKDVFVPAHALAGAIDGDTVVCHVSG 143 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 D +GRRE IV V+ G +V P ++++ + G G Sbjct: 144 EDARGRREGVIVGVVAHGRKTFPGLLHRTPEGWYVKPKEAKIRHLFRVEAP-PPGTEEGT 202 Query: 191 VVVVELTQRPTRRTKAV------------GKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 VV++E+T P + G+I+ VLG + + D+ + + +P Sbjct: 203 VVILEVTVYPAPLSDPAAHSSEELPNIPAGRILTVLGADGDPAIDTDLVIASFGFSTAFP 262 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 + VE +EVP R D R L +VTIDG+ A+DFDDA+ E++ G L + Sbjct: 263 EEVEALAHRRAQEVPIVPDKERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIH 322 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS YV P + LDRE R TSVYFP +V+PM PEVLSNG+ SLNP+ DRL Sbjct: 323 IADVSAYVLPGSALDREGFARATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTAR 382 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 + +G++ + +V+ S R+TY++V L G+ Y P L + + +L Sbjct: 383 IDREGQVLSWTLDRSVIRSRMRMTYSEVHRALTGEP--SPDYLPYENRLHTMWRVASLLR 440 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 K R +G + F+ E + + + I ++ R +H+LIEE M+LAN A + + Sbjct: 441 KRRMGKGSLDFDLPEPEIVLDLRGEPVDILRSPRYLSHQLIEEFMLLANTLVATRLRERL 500 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 ALFR H+ P+ E I + S LA LGL PRD + +LE P + Sbjct: 501 GTALFRAHETPTPEKIENLYSFLASLGLPFTKPEVVTPRDLSRILEETKGSPLEHPVHYS 560 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 +LRS+KQA YDP GHFGLA Y HFTSPIRRYPDL +HR + T Sbjct: 561 VLRSLKQARYDPSPLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLDLA-----------TS 609 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 +G + + QHCS ER+A EA R D+ K F+ +G F G I+ V FG Sbjct: 610 SGMESLLPGSLSAVAQHCSERERKATEAERMAIDFKKVRFISKHLGESFDGRITGVASFG 669 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FV L F++G++ + L DYY + + ++ G +G+T+ +GD V V V V+ Sbjct: 670 LFVELSPFFVEGMIPIHMLGRDYYEYREDRHQIRGSRTGRTFSVGDAVRVTVAKVDFQRL 729 Query: 719 KIDFSLISSERAPRNVG 735 + DF L Sbjct: 730 RCDFVLEEEAGQLSEEK 746 >UniRef50_A8RFP5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RFP5_9FIRM Length = 716 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 243/718 (33%), Positives = 383/718 (53%), Gaps = 16/718 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE +L + K + K + ++L+ LH E + + L A+E + L +R+ Y Sbjct: 12 REELLALIEKSDYKGMNVEQLSHTLHKEEHALFVEMMKELNALEAEHILARDKRERYFFS 71 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 ++L V G + + G+GF+ + Y++ ++++ + D+V A+ + G RE Sbjct: 72 KQLGYVVGKLRVNPKGFGFVEYDEG--SFYVAPDKLRFALDQDEVYARSWTNN-DGSREG 128 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 IV V+ + +VG G + +PD + I V+V + Sbjct: 129 EIVEVIKHNINNVVGVVKMREGRKYFLPDADIYNRPFKITNYDDFHLVHDSKVLVHIDSY 188 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 + I + +G G+ + L +I +P+ V ++V + E + + A Sbjct: 189 GST---LKCHIEKEIGYKYDPGIDILSILLEKDITPEFPREVMEEVMQIPEALQSKEYAN 245 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR L +TIDGEDARD DDA+ EK G +RL+V IADVS+YV + LD+EA R Sbjct: 246 RKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVSHYVTAGSALDKEAYAR 304 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTSVY +V+PMLP LSNG+CSLNP+VDR + C M ++ KG + Y+ Y +V++S Sbjct: 305 GTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVIDYQIYPSVINSDE 364 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TYT V IL+GD+ +++QY L+K ++ L ++ K RE+ G I F++ EAK + N Sbjct: 365 RMTYTAVNAILEGDEQVQKQYPHLLKMCLDMKVLSGIIRKRREKLGAIDFDTNEAKILVN 424 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + + I +R +A ++IE+ MI AN + A V + P++FRIH++P + I F Sbjct: 425 EKGKPVDIVLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQPEPKRIREFAR 484 Query: 500 VLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + LG GG P +L+ + +L T +LRSM++A YD GHFGL Sbjct: 485 IAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARYDRRCIGHFGL 544 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 AL++Y HFTSPIRRYPDL +HR ++ + ++ + + S Sbjct: 545 ALKNYLHFTSPIRRYPDLVVHRMLRKYFFEG------LQDSEKMARDEQWIEDAAYQASE 598 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER A +A R V D K ++M ++ + GVIS +T FG FV L + ++GLVH+S++D Sbjct: 599 RERNAIDAERAVEDMKKAEYMEGRIDRQYDGVISGITRFGLFVELANT-VEGLVHISTID 657 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK 736 +DYY +D + L+GE S YR+G RV V A N +R+IDF L+ ++ GK Sbjct: 658 DDYYHYDDETKCLIGEHSANVYRMGQRVRVVCVAANRFKREIDFELVVKKKKKHRRGK 715 >UniRef50_B2V9T9 Ribonuclease R n=3 Tax=Aquificales RepID=B2V9T9_SULSY Length = 701 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 235/709 (33%), Positives = 386/709 (54%), Gaps = 21/709 (2%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP---- 79 I++ L ++KP ++ +++ +E + +RR LR +++ ++V + Y L Sbjct: 8 IVDFLKNQKKPVYLKQILKAFNLDKKEDKKLVRRLLRKLQK-NKIVLYKNGGYILKREIQ 66 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREA 139 E+ +L+KG V H G+GFL E + DL++ +MK GD VLA+ +G++EA Sbjct: 67 EKENLIKGKVEAHESGFGFLIREDGEPDLFIPPIEMKYLFDGDIVLAE--EKIYRGKKEA 124 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +IV+VL + VG+ E FV D + I + + + VVVE+ + Sbjct: 125 KIVKVLERRVKTAVGKLKQEGNRYFVYLLDFVIPHKIYVDKKEAKKYELDNYVVVEILRY 184 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 P + +A G+I++ LG T +I R +++P ++ L V + Sbjct: 185 PEPKVEAKGRIIKDLGKVKNTQTVAEIVARKYDLPLTHSPEALKEAEKLPSVV--KITKN 242 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DL TID E ARD DDAV EK G +RL+V IADVS+YV+ + +D+EA R Sbjct: 243 RKDLTKQICFTIDPESARDHDDAVAIEK-EGDKYRLYVHIADVSHYVKEGSVIDKEAFQR 301 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G + Y P + + MLPE L++ LCSL P+ R CEM + KG + Y YE+V+ S A Sbjct: 302 GNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESKA 361 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 +LTY + I+ G +L + + LVK L+ + L ++L KA+E+RG I F+ E++ +F+ Sbjct: 362 KLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILFD 421 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + +R+ A+++IEE MI+AN + A+ +EK P ++R+H+KP E + +F Sbjct: 422 QYGNPYDVVPYERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKLEKVMAFVD 481 Query: 500 VLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 ++A LG ++ K + + +++E P+ +++ + LR+MKQA Y PEN GHFGL Sbjct: 482 LIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSPENIGHFGL 541 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRY D+ +HR +K +++ + + CS Sbjct: 542 ASECYTHFTSPIRRYADVWVHRLLK-------KAIKKKFTKKDMEELPKKLDIIAKQCSE 594 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER AD+A RD D LK + D+VG F+G+I+ V G F+ ++ I+GLV + SL Sbjct: 595 RERVADDAERDALDILKLRILKDKVGEKFEGIITGVMAVGLFIEIERYIIEGLVPIDSLP 654 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +++D+ +L+G+ +RLGD+V V + V+ D ++ID L+ Sbjct: 655 G-KFKYDEKNHQLIGDKMK--FRLGDKVLVEIVKVDEDTKRIDLKLVEK 700 >UniRef50_Q1NL99 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=2 Tax=Deltaproteobacteria RepID=Q1NL99_9DELT Length = 782 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 277/730 (37%), Positives = 423/730 (57%), Gaps = 18/730 (2%) Query: 5 PFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 P + A+ A P+ E +L L REK AS E+A L + + + L++ L ++R Sbjct: 62 PRGGKSAKPGAGPV---EAVLAFLHGREKGASATEIAAALAEQPDFDRQLLKKTLEELDR 118 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGR------KDDLYLSSEQMKTC 118 G LV +RR Y+L L++ + H G+GF + D++L + M + Sbjct: 119 RGWLV-SRRSRYSLAPDLEICPAELSMHPRGFGFAMLSESTDAARYHKDIFLPPDAMGSA 177 Query: 119 IHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 +HGD++L + R + E R++RVL + +VG Y + A G V P+D RL F +++ Sbjct: 178 VHGDKILVLVVK-GRADKAEGRVLRVLERGITSLVGIYVSGATSGLVTPEDERLPFKVVV 236 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWP 238 Q GAR G VVVE+++ + G+IVEVLGD + ++IA+R+H++P+ + Sbjct: 237 RRPQSGGARNGEAVVVEISRF-KEQGNPEGRIVEVLGDPAAAPVQIEIAIRSHQLPHRFA 295 Query: 239 QAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 A+ +V +++ E +A R+DLR++P VTID E ARD+DDAV E GG RL+V+ Sbjct: 296 PALLAEVEAYSDKI--EPQASRLDLREIPHVTIDSESARDYDDAVAVEPLAKGGLRLYVS 353 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS+YV+P + LD EA RGTSVYFP +V+PMLPE LSN LCSL P DR M + Sbjct: 354 IADVSHYVQPGSALDDEAYARGTSVYFPGRVVPMLPERLSNDLCSLVPDQDRYTMSAIID 413 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKHLEELHNLYKVL 417 KG+ +F ++++ S RLTYTKV +L+ + +L +YA ++ LE++ L L Sbjct: 414 FDGKGQRKSARFGKSLIRSRHRLTYTKVKAMLEDREPELCRRYADILPDLEQIAKLAANL 473 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 ++ R RG I FE EA + + + I+ I + +RN AHKLIEECM+ AN + A F+E+ Sbjct: 474 NQVRMRRGSIGFEIPEADIVLDDDGHIDHIRRGERNMAHKLIEECMLAANEAVAEFLERQ 533 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P L+RIH+ P +T F +GL+LP G +P P + ++L A P ++ + Sbjct: 534 QAPTLYRIHEDPDPVKVTEFAEFAGAMGLQLPKG-EPGPGWFGQVLALAAGTPREYIVSS 592 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 +LLRS++QA Y PEN GHFGLA Y HFTSPIRRYPDL +HR + L A E G + Sbjct: 593 LLLRSLQQARYAPENVGHFGLAATHYTHFTSPIRRYPDLMVHRILARLTAAEGGGKKRQK 652 Query: 598 ETGGYH--YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + G ++ G S ER A +A R+ + L +M D+VG F V+S ++ Sbjct: 653 QPVGAQGLAPAADLATAGLELSRRERVAVDAERNATERLVALYMADKVGEEFDAVVSGIS 712 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L ++ I G V ++ L +DYY D RL+G +S + +++G+ + VR+ +V+ Sbjct: 713 SFGMFVELVEIMISGAVALTDLTDDYYEVDDKSHRLVGRNSNRIFQIGNPIRVRLSSVDQ 772 Query: 716 DERKIDFSLI 725 R+++F + Sbjct: 773 RRRRLNFVIA 782 >UniRef50_Q1K2V6 Ribonuclease R n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2V6_DESAC Length = 722 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 271/715 (37%), Positives = 381/715 (53%), Gaps = 16/715 (2%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P E I + +P S +EL EL++ + + L + L ++ G + RR Y Sbjct: 2 PFSIAEVIRQLQRFERQPFSINELLGELNLSRSLRRK-LVQFLDSLVVAGLIKHMRRGRY 60 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR 136 + L LV + G+G L +LY+++ ++ + GD+V+A L R R Sbjct: 61 RVNRPLKLVCARLKHQSSGHGVLTDCDDGHELYVATFRLGGAMDGDEVMALELPESRGRR 120 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM-GARMGFVVVVE 195 E IV V+ ++G + G VV + + +G VVV+ Sbjct: 121 PEGWIVEVVKRSRETLLGVCEKNSRQGGVVFRSEQGGLTFDVDDRSRDVSLLVGQVVVLR 180 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + + P +G IV+VLG + + + IP + AVEQ + + EVP E Sbjct: 181 IDRYPAMHENGLGHIVDVLGHAGSPEVDILSTVHRLGIPNRFSAAVEQAASAIAAEVPPE 240 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 A R DL LP VTIDG DARDFDDAV + G WRL VAIADV YYV + LD E Sbjct: 241 VVAARADLCSLPFVTIDGADARDFDDAVCLARSEDGHWRLHVAIADVGYYVEEGSALDLE 300 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 AR RGTSVYFPS+ +PMLP+ LSNG+CSL P+ +RL +V E+T GR ++ Y A + Sbjct: 301 ARERGTSVYFPSRCLPMLPQALSNGICSLQPEKERLVVVAEITFDDLGRRLNFEAYRATI 360 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 S RL Y +V +L G PL + L ++ +L + L R RG I F+ EA Sbjct: 361 RSRQRLIYEQVQQVLDGQVPEIPVSEPLTEMLHQMQHLAQSLRHRRLHRGAIDFDLPEAN 420 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 IF+ E RI RI + R D+H+LIEE M+ AN + A F+ +E +FRIH+ P ++ Sbjct: 421 VIFDDEGRIVRIGRRSRLDSHRLIEEFMLCANEAVAEFILSRRETGMFRIHESPDIRSMQ 480 Query: 496 SFRSVLA--ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 SF+ LA LG+ L + R+ LL V + +LLRSMKQA YD EN Sbjct: 481 SFQQFLATLNLGITLDE-DGISARELRRLLHEVEGTSLEFSVNRILLRSMKQARYDAENS 539 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA +Y HFTSPIRRYPDL +HR + +L + + E + +L Sbjct: 540 GHFGLASDAYCHFTSPIRRYPDLLVHRLLLQILDGRADWEAD-----------EPLPRLA 588 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 + AERRA EA RD+ D KC FM D++G + G I+SV FGFFV LD+ F++GLVH Sbjct: 589 DAATAAERRAMEAERDIVDLRKCQFMEDKIGTRYSGYITSVNAFGFFVELDEFFVEGLVH 648 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 + +L +DYY FD+ L+G++ +T+++GD VEV V + R+IDF L E Sbjct: 649 IRTLSDDYYVFDEERLILVGQARRKTFQVGDTVEVEVWQIKSAAREIDFVLPDLE 703 >UniRef50_B0TXI0 Exoribonuclease II n=20 Tax=Francisella RepID=B0TXI0_FRAP2 Length = 766 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 294/733 (40%), Positives = 428/733 (58%), Gaps = 17/733 (2%) Query: 1 MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR 60 + DP ++ EA+KY NPIPSRE IL ++ P S + +A L I + +GL RL Sbjct: 6 IHNDPNKDLEAQKYENPIPSREVILNYIRDTNIPVSIENIANALEIFKKNLFDGLVNRLG 65 Query: 61 AMERDGQLVFTRRQCYALPERLD-LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 AM RDGQL R Y+LPE + V RD L + + S Q K + Sbjct: 66 AMVRDGQLEKDRS-YYSLPEIAPIYITSKVTADRDSRLELFSHTLNTKVGIVSHQAKMVM 124 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD+V A+ LG +++GR +A I ++ I G Y+ F+ P ++ DI++ Sbjct: 125 VGDEVTAKVLGLNKRGRIDAEIQTIVSRAQKTITGYYYKSFDCDFIKPVSKSMTSDIVLL 184 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P + ++ E+ P+ + AV K + + A+ +A + +++ W + Sbjct: 185 PPK-QKIEHNSLIEAEIIVYPSINSVAVAKFKQEVEAVSPVKEAMMMATQKYDLIEQWSK 243 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 + + + ++V RVDLR+ VTIDGEDA+DFDDAVY K + G W+L+VAI Sbjct: 244 KTLRYLDDISDDV---IVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAI 300 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVS YV + LD +A+ R TSVYFP VIPMLPE LSNGLCSL P DR +VCEM + Sbjct: 301 ADVSNYVEKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNI 360 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVLD 418 S +G+L+ YKFY AV++S ARLTYT+V +++ Q+ E+ LV ++ +L+ LYKVL Sbjct: 361 SKEGKLSRYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVLH 420 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 +AR+ERG I F++ E + I N IE I RNDAH+LIEECM++AN++AA+F K K Sbjct: 421 QARQERGAIDFDTVETQIILNDHNHIESIVPRHRNDAHRLIEECMLVANVAAAKFTIKHK 480 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP--EPRDYAELLESVADRPDAEMLQ 536 + + FR+H +P + + + + LA+ G+ L G P+ AE+L+S+ DRPD + +Q Sbjct: 481 KTSPFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDIQ 540 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M LRSM QA+Y N GHFGLA Y HFTSPIRRYPDL +HR IK ++ + Sbjct: 541 MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVHRIIKSIIGE-------- 592 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 E GG Y E+ + ++ S ER AD A++ V +WLKC FM D +G+V + I V G Sbjct: 593 YEHGGADYKPSELANICENASDQERNADGASKQVENWLKCYFMQDYIGHVLEAQIKHVNG 652 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 G F L D++I+GL+HVS++ DYY +D+ L+G+ + + Y++G + VRV ++D Sbjct: 653 LGLFAELKDMYIEGLIHVSAIPGDYYIYDEAKDILIGKRTHKVYKIGQDITVRVVRADLD 712 Query: 717 ERKIDFSLISSER 729 IDF L + Sbjct: 713 RIHIDFELYDPRK 725 >UniRef50_B8IYR8 Ribonuclease R n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYR8_DESDA Length = 852 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 266/828 (32%), Positives = 390/828 (47%), Gaps = 51/828 (6%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 PS E +L+ L + +P D L L + E+ E L L +ER G + R + Sbjct: 21 FPSTEELLQTLAAQNRPMRLDGLLRVLGLARRERKE-LEAALDDLERQGSALRLRGGLWT 79 Query: 78 LPERLDLVKGTVIGHRDGYGFLRV-----EG----------RKDDLYLSSEQMKTCIHGD 122 PE L + G R+G GF+ + D+Y+ S Q H D Sbjct: 80 RPENLKSITGRFSALREGAGFVTPMRLAADDEQESPRWQFSGGKDIYIPSAQNGGAWHQD 139 Query: 123 QVLAQPLGADRKG-RREARIVRVLVPKTSQIVG-RYFTEAGVGFVVPDDSRLSFDILIP- 179 V ++G E RIV ++ ++ F P DSRL D + Sbjct: 140 LVRVALSPGAQRGPSPEGRIVEIVERGLKEVPAHVVHRHGNSLFCRPADSRLPADFNVEL 199 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P G +V++ + P ++ G + ++ HE+P +P Sbjct: 200 PAGSEAPAQGTLVLLAPLK-PLASDLWSATLLGNYGREDDVAVQEELVKLNHEVPRDFPA 258 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG-GWRLWVA 298 + L E GR D+RDL LVTIDG DARDFDDAV+ E++ GG GW L VA Sbjct: 259 GALAEAEALP---GEADFKGRRDVRDLALVTIDGADARDFDDAVHVEEQPGGKGWVLRVA 315 Query: 299 IADVSYYVRPST-----PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 IADVS+YVRP LD EA +RG S YFP V PMLPEVLSNGLCSL P V+RL + Sbjct: 316 IADVSHYVRPRGRGCPGALDAEALSRGNSWYFPRSVEPMLPEVLSNGLCSLRPHVNRLAV 375 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL-------REQYAPLVKH 406 + E+ ++ G+ +F E VM S ARLTY +V + + E+ ++ Sbjct: 376 LAEIPFTAAGKPGKPRFSEVVMRSAARLTYDQVKACILDKDEAALAELRTEERGEEVLAM 435 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 L++ LY VL R +RG + F+ EA+ + R+ + +RNDAH+LIEE MI A Sbjct: 436 LDKAFALYTVLRDVRRQRGTLDFDLPEAQSRLDDLGRVVWLGHRERNDAHRLIEEFMIAA 495 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV 526 N + AR + A P L+R+H P E + S LA G+E KP P +L + Sbjct: 496 NEAVARHLRDADIPFLYRVHPDPDPERLESLFDTLAATGIE-NLPPKPSPAAMQGILAAA 554 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 P ++ + LR+M QA Y P N GHFGLA +Y HFTSPIRRY DL HRA+K L Sbjct: 555 QGTPQEFLVNRLCLRAMPQARYMPFNEGHFGLASTAYCHFTSPIRRYADLLTHRALKMSL 614 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 + G E++L++G + ER A R++ L C +L +VG Sbjct: 615 GLDSGPLPAG----------EKLLRIGDQINRRERAAMACEREMDRRLGCLALLPRVGEH 664 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F G+++ VT FG FV L+ + ++G++ V L +D+Y FD L+G+ SG +R+G ++ Sbjct: 665 FSGIVAGVTDFGVFVELEAMPVEGMIRVEDLGDDWYDFDARLMSLVGQRSGVQWRMGQKL 724 Query: 707 EVRVEAVNMDERKIDFSLISSER--APRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFE 764 EV + V++ +I + + R + + AG+ G R+ G ++ Sbjct: 725 EVALSEVHLGRLEIRLMPLELPKGIGGRGARSPRGSRGRGSPAGRAAGGRK--GSSSGWK 782 Query: 765 PDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812 S GE + + K+ + KK A + + A K K Sbjct: 783 LVSPGDGESRGRNDKPAKNGKNGKKSGAGKSGHSGQPGGQSARKGKNG 830 >UniRef50_C7RH37 Ribonuclease R n=4 Tax=Anaerococcus RepID=C7RH37_ANAPD Length = 708 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 235/711 (33%), Positives = 379/711 (53%), Gaps = 17/711 (2%) Query: 18 IPSREFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL-VFTRRQC 75 + ++ IL + P + EL L ++ + +R ++ +E++ ++ V +++ Sbjct: 1 MNLKDIILNIVYDENYLPMTFKELDKYLKVDKYTRK-AVRDIIKDLEKENKIRVSNKKRI 59 Query: 76 YALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRK 134 L + + G + + GYGF + R +D+++ + M + D+V + + K Sbjct: 60 MPLTDDEINLIGKISMAQAGYGFFISDNRDFEDVFIKRDNMNKAHNNDRVKIELIKRKEK 119 Query: 135 GRR-EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 GR+ E R++ ++ +IVG + G GFV+PDD DI I A+ VV Sbjct: 120 GRKAEGRVIEIIERAKDEIVGSFQKNKGFGFVIPDDRSYGEDIFIAEKFFNKAKNKDKVV 179 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 VE+ P + K G+I E++G + + +R H +PY + + +++ +K+ V Sbjct: 180 VEIINYP-KDGKPEGRIKEIIGGKNDKNIEILSLIRAHGLPYQFSKETKKESLYVKDTVN 238 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E GR DLRDL VTIDG D++DFDDA+ EK G + L+V IADV++YV+ T +D Sbjct: 239 EIELEGRKDLRDLFTVTIDGRDSKDFDDAISIEK-NGENYDLYVHIADVAHYVKKGTAID 297 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +A RG S Y + VIPMLPEVLSNG+CSLNP DRL + +MT++ KG++ +FYE+ Sbjct: 298 NDAYERGNSTYLFNIVIPMLPEVLSNGICSLNPNEDRLAISLKMTINDKGKVIDNEFYES 357 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++S RL Y V L + + + + + L L ++L+ RE+RG I F E Sbjct: 358 VINSDHRLVYDDVNAFLDKNDENVYEDELIKEKLRIFDELREILNTMREKRGSIDFNFSE 417 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 ++ + R+ I +R +K+IEE M+ AN + A P ++RIH+KP E Sbjct: 418 SQIDVAEDGRVLNISNFERGSGNKMIEEFMLAANETVASLFAYMDFPFIYRIHEKPKEEK 477 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I SF+ L +G + GN P+D+ ++LE V + ++ ++LR+M++A Y Sbjct: 478 IESFKKALNTMGYNI-RGNDLHPKDFQQILEEVEGKDVESVINILMLRTMQKAKYSEHRD 536 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 HFGL+ Y HFTSPIRRYPDL +HR +K + + T+ + + Sbjct: 537 MHFGLSTSFYTHFTSPIRRYPDLIVHRLVKKFIHNKLTSLNQTSL-------EKTITNNA 589 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 H SM ERR+++ RDV D LKC +M +G+ F G IS++T FG F+ LD+ ++GL Sbjct: 590 DHLSMTERRSEDCERDVEDLLKCKYMTRFIGDEFYGNISAITEFGIFIELDNT-VEGLFM 648 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 ND Y + + + Y +GDRV++RV V+ +R IDF L Sbjct: 649 YK-FSNDRYEYLEDKMKAFNTDKKIFYSIGDRVKIRVMDVDTYQRNIDFDL 698 >UniRef50_C5VGM8 Ribonuclease R n=8 Tax=Prevotella RepID=C5VGM8_9BACT Length = 765 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 220/778 (28%), Positives = 364/778 (46%), Gaps = 38/778 (4%) Query: 9 REAEKYANPIPSR---EFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 R+ +K + + + E ++ + + S ++ L + + + Sbjct: 2 RKEKKSSKRLTKKQLAEKLMSFFQTQPDETFSFKQIFHALKLTTHPAKMLAIDVMEELAW 61 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQV 124 D L Y L + + +GT I +G E +++S ++GDQV Sbjct: 62 DDFLSKVGESAYTLNTKGQVQEGTFIRKANGKNTFLPEDGGTPVFVSERNSMAALNGDQV 121 Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 Q + + +EA ++ +L K VGR E + F+V ++ DILIP ++ Sbjct: 122 RVQFMARRQNHIKEAMVIAILQRKKDTFVGRLRVEKDIAFLVTQENLFIHDILIPKKKLK 181 Query: 185 GARMGFVVVVELTQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 G + +V++T+ P VG++V+VLG+ + ++ L + +PY +P+ VE Sbjct: 182 GGKTDDRALVKITKWPDADHKNLVGEVVDVLGEAGDNDVEMNTILAQYGLPYKYPKRVED 241 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + E+ + A R D RD+ TID DA+DFDDA+ K G W + V IADVS Sbjct: 242 AAKKISAEITAQDYAEREDFRDVWTCTIDPRDAKDFDDALSIRKLESGQWEVGVHIADVS 301 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV+ +DREA+ R TSVY + IPMLPE L N +CSL P ++L C + + Sbjct: 302 HYVKEGDIIDREAQQRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSCIFNLDDEA 361 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP------------LVKHLEELH 411 + Y+ V+ S+ R Y + IL+ + + P + + L Sbjct: 362 NVKSYRIVHTVIKSNRRYAYEEAQQILEDNGVVDGTGEPAPDPGKAGYKGENAEQIITLD 421 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 L K++ R + G + F+SEE F + + + R + DA+KLIEE M+LAN + A Sbjct: 422 RLAKLIRGRRMKAGSVKFDSEELHFDIDEKGKPIRCYFKRSKDANKLIEEFMLLANKTVA 481 Query: 472 RFV-----EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP--EPRDYAELLE 524 V K + +R+HD P + + R A+ G +L + R +L++ Sbjct: 482 ESVGIVKKGKKAKTLPYRVHDNPDPQKFENLREFTAKFGYKLKSASTKGATARALNKLMD 541 Query: 525 SVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKY 584 V + + +++QT+ LRSM +A Y N GHFGLA Y HFTSPIRRYPD +HR I Sbjct: 542 EVQGKREEKVIQTIALRSMMKAKYTTHNIGHFGLAFDYYTHFTSPIRRYPDTMVHRLITR 601 Query: 585 LLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG 644 + + E +L +HCS E A A RD + +FM + +G Sbjct: 602 YQNGGRSA------------NKEHYEELCEHCSDMELVAQNAERDSIKYKMVEFMSEHIG 649 Query: 645 NVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGD 704 + IS + FG + +D+ +G++ + LD+DYY FD+ L+G Y+LGD Sbjct: 650 ECYDAHISGIQSFGIYAEIDENHCEGMIPMRDLDDDYYDFDEKNYCLVGRRRHHVYQLGD 709 Query: 705 RVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVN 762 + ++V +++ R++DF+L + P +TA E A +K KR ++ Sbjct: 710 PIRIQVAKADLERRQLDFAL--DDGRPLKAKQTAAEYAVNRKNDRKNSKRGSKSRRRK 765 >UniRef50_A8SMX4 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMX4_9FIRM Length = 697 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 228/709 (32%), Positives = 374/709 (52%), Gaps = 16/709 (2%) Query: 18 IPSREFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 + + +L + K++ P +++ELAV L+I L+ + L ++ ++ F Y Sbjct: 1 MNLEKQLLNFMKKKDYIPLTKEELAVALNISFN-SLKQFFKLLDSLVNSKKVSFNDY-KY 58 Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KG 135 ++ ++ + +KG + G F E DD+++ +++ H D V + + R Sbjct: 59 SIYQKKETLKGKISFTTKGNAFFISEEDIDDIFIPKKELNHANHNDDVEIEIIKEKRMNS 118 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 + E R+++VL ++ IVG + GFVVPDD + ++DI I A+ VV + Sbjct: 119 KAEGRVLKVLNRNSNLIVGTFTENKNFGFVVPDDIKCNYDIFIKKGDKNSAKTDDKVVCK 178 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 L + P ++ G ++EV+G+ + L+ EIPY + + +++ L + ++ Sbjct: 179 LVEFPDKKKNPEGVVIEVIGNKKDKNAQIISLLKDMEIPYKFSNKINKELEELTQTDIKK 238 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 RVD R+L VTIDG DA+DFDDA+ +KK + L+V IADVS+YV+ + LDRE Sbjct: 239 EIKNRVDFRNLFTVTIDGADAKDFDDAISIDKKDND-YVLYVHIADVSHYVKKDSKLDRE 297 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RG SVY V+PMLPEVLSN LCSLNP D+L + +M + G + YKFYE+V+ Sbjct: 298 AYKRGNSVYLIDYVVPMLPEVLSNNLCSLNPNTDKLSITVKMIIGKNGNVKEYKFYESVI 357 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435 +S+ RL Y V + L+G + + L ++L + L ++L R RG I F E Sbjct: 358 NSNYRLVYDDVTNFLEGKKHFYDD-ETLKENLLVMKELDEILTNKRINRGTIDFNFPEIA 416 Query: 436 FIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAIT 495 F + ++E I + + A+++IE MI AN + + P ++RIH KP + + Sbjct: 417 ITFGKDGKVENIAKKENGLANRIIESFMICANEVVGKHFGELDIPIIYRIHSKPPEDKLE 476 Query: 496 SFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 ++ L+ L +++ + + +E+++ D ++ + +LRSM +A Y P H Sbjct: 477 ILKNNLSRLNIKMKPIDMISSKYLSEIIDQFKDTNKSDFINYSILRSMTKAKYSPNIDIH 536 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQH 615 FGLA Y HFTSPIRRY DLT+HR +K L + + + H Sbjct: 537 FGLATFLYCHFTSPIRRYADLTVHRTLKNYLH---------SNIEIPKNYISYLDITSNH 587 Query: 616 CSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 + E A +A R + D K +FM +++G VFKG+I SVT FG FV+L++ ++GLV Sbjct: 588 INDTEVLAIDAERKLEDIKKVEFMKNKIGQVFKGIIVSVTSFGLFVQLENT-VEGLVKYE 646 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + +DYY FD+ +G + + +G VEV V VN +I+F L Sbjct: 647 DIMDDYYEFDEQTLTAIGRRTKNVFDIGMGVEVIVAKVNEITNEINFYL 695 >UniRef50_C6C1J0 Ribonuclease R n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1J0_DESAD Length = 746 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 255/756 (33%), Positives = 390/756 (51%), Gaps = 46/756 (6%) Query: 10 EAEKYANPIPSREF-ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL 68 + K NP + + + + KP S EL + + + ++ L+ + R+G++ Sbjct: 3 KKRKSKNPGMIKPYEAMNVFKQSRKPLSVGELEKRVGLTKRHRK-FVKNILKDLVREGKI 61 Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQ 127 + Y + E+++LV G + R G FL + +K D+Y+ ++ ++ HGD+V Sbjct: 62 IKI-GSAYGVVEKMNLVTGKLQVQRSGAAFLLPDDKKRKDIYIHTKNLRDAWHGDRVTVA 120 Query: 128 PLGADRKGRRE-ARIVRVLVPKTSQIVGRYFTEAGV--GFVVPDDSRLSFDILIPPDQIM 184 G+ G+RE R+VRVL R G P D RL F I++ PD+ + Sbjct: 121 ITGSHWGGKREEGRVVRVLERGKQVFPVRVIRPMGGTALLCHPTDPRLDFGIVVEPDEAV 180 Query: 185 GARM--------------------------GFVVVVELTQRPTRRTKAVGKIVEVLGDNM 218 G +++V ++ G+I+++LGD Sbjct: 181 VNEPVLDDNGREIYPAESVDAEVDFTRVSRGDILLVAPGEQINPSL-WEGRILKMLGDED 239 Query: 219 GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARD 278 + I H IP +P V L +E EE A R D+RD+P VTIDG A+D Sbjct: 240 DAIVQEAIVKANHGIPTAFPGKVLAVADALPDEPVEEDFADREDMRDIPFVTIDGATAKD 299 Query: 279 FDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLS 338 FDDAV+ EK GG +RL VAIADVS+YV +PLDREA RG S YFP V PM PE LS Sbjct: 300 FDDAVFVEKIAGG-YRLRVAIADVSHYVAMESPLDREALKRGNSYYFPKSVEPMFPEALS 358 Query: 339 NGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV-WHILQGDQDLR 397 NGLCSLNP V+RL M + G F AV+ S RLTY +V ++ G+++ + Sbjct: 359 NGLCSLNPDVNRLAMTATIEFDKSGAPVNSSFAPAVIRSQGRLTYEQVYQGVILGEKEEQ 418 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHK 457 E L+ L+ L + ++K R RG + F+ E + +FN + R I RN AH+ Sbjct: 419 ESLGDLLPMLKLCEELARKINKRRNARGSLEFDLPEPEILFNLQGRTVDIRPRCRNFAHQ 478 Query: 458 LIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR 517 ++EE MI AN + A F+ + + L+R+H P E +T+ VL ++G+ + P+ Sbjct: 479 IVEEFMIAANEAVAEFLTEKEIGCLYRVHPGPDEEKLTNLFKVLRKIGISKQIPDPVTPQ 538 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 E+++ ++ +LLRSMKQA Y+P+N GHFGLA + Y HFTSPIRRY DL Sbjct: 539 TLQEVIKDSEGTDQEYIVSRLLLRSMKQAKYEPDNEGHFGLASECYCHFTSPIRRYADLV 598 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 +HR +K L E +++ ++G S ER A EA R++ L Sbjct: 599 VHRLLKVALGDEHQAIPG----------QKQLGRIGSAISGTERTAMEAEREILKRLTII 648 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSG 697 F+ D+VG F GVISS+ FGF+V ++ +G+V +SSL +DYY F Q ++GE +G Sbjct: 649 FLKDKVGEEFTGVISSIAEFGFWVEFQEVMAEGMVRLSSLGDDYYTFWSDRQMIVGERTG 708 Query: 698 QTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 +RLG ++ VR+E+V+++ + + SL+S + Sbjct: 709 HAFRLGQKITVRLESVSLELLEANLSLVSGAEDYKK 744 >UniRef50_Q2S2D1 Ribonuclease R n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2D1_SALRD Length = 666 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 221/684 (32%), Positives = 351/684 (51%), Gaps = 33/684 (4%) Query: 58 RLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKT 117 L M QLV + Y G + H G+GF++ + ++ ++ M Sbjct: 1 MLAEMTAQ-QLVERDGRKYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEFFIREANMGE 59 Query: 118 CIHGDQVLAQPL-GADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDI 176 +HGD V A +RE ++ V+ + +++VG + + FV PDD R+ D+ Sbjct: 60 ALHGDLVRVAVAARAPEDKKRECEVLEVVERRCTEVVGTFHHRSDFAFVEPDDQRILQDV 119 Query: 177 LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 + PD GA+ G V+V + + R+ G+I+ V+G + + V + ++ Sbjct: 120 YVAPDAFSGAKDGEKVMVSIDRFDDRKASPEGRILRVIGPSDDPNVRVLSLAMSMDVKAD 179 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 +P VE + + ++PE+ R DLRD P+ TID DA+DFDDAV+ E+ G + + Sbjct: 180 FPDEVEAEAESIPVKIPEDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVG 239 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+YV P T +D EA RGTSVY + IPMLPE LSN +CSL P D+L Sbjct: 240 VHIADVSHYVEPDTAIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSIL 299 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 M ++++G + Y+ E V+ S RLTY + ++G + A +V+ + L K Sbjct: 300 MELTTEGDVVDYEICETVIHSKERLTYDRAQDYIEGGYPDDKMAADVVQ----ANRLAKT 355 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE- 475 + + R + G I F S+E I + + I + +R A++LIEE M+LAN + A+ + Sbjct: 356 ITRRRMQEGAIDFGSDEVNVILDDDGTPTNIVRKERLQANRLIEEFMLLANRTVAKHIAA 415 Query: 476 ------------KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN-KPEPRDYAEL 522 P ++R+HD P +E I + ELP + D L Sbjct: 416 PEHVDRHRSNGTDEPLPFVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGAL 475 Query: 523 LESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 ++ V +P+ +++ LR+M +A Y N GH+GL Y+HFTSPIRRYPDL +HR + Sbjct: 476 IDEVQGQPEEQVIVRAALRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLL 535 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 K +E++ +HCS ER A+EA R+ + +++ + Sbjct: 536 KRYAKGG------------SPADIEDLAARCEHCSEQERNAEEAERESVKLKQVEYVKNH 583 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 VG F GV+S VT FG FV + DL ++GLVHV ++ DYY +D+ L GE++G +YR Sbjct: 584 VGEEFDGVVSGVTKFGVFVEITDLLVEGLVHVREMN-DYYVYDESTYTLRGENNGTSYRP 642 Query: 703 GDRVEVRVEAVNMDERKIDFSLIS 726 GD V V V + ++++R+ID + Sbjct: 643 GDSVRVEVASASVEDREIDLLFVE 666 >UniRef50_C3W9Q8 Exoribonuclease II n=14 Tax=Fusobacterium RepID=C3W9Q8_FUSMR Length = 710 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 212/704 (30%), Positives = 356/704 (50%), Gaps = 15/704 (2%) Query: 22 EFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 E + + + K DE+ L + + E R + DG+L+ R Y LPE Sbjct: 8 EKLKDIFKNTKGKGLKLDEITKMLGWSPKFKKEN-REIIEKWVSDGELIKNNRGKYNLPE 66 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR-EA 139 +KG RD + F+ E +++ + GD V + + R+ E Sbjct: 67 TQGYIKGVFSIIRDRFAFVDTEDEG--IFIPKSGFNGALDGDTVFVRLTAGMKGDRKKEG 124 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQR 199 +VRV+ ++G + GFV P S DI IP ++ A +VVV +T Sbjct: 125 EVVRVISRDKDIVIGIFQKNKNFGFVTPTHS-FGRDIYIPSIRMKNAENNQLVVVRITFW 183 Query: 200 PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 K G+IVE+LG+ T ++ + + +P + + E+ ++ G Sbjct: 184 GDNERKPEGEIVEILGNPYDTKNMIEALIIREGMSETFPPEAMAEARRIPMEIGKKELEG 243 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLR LP++TIDG+DA+D DDAVY EK + G ++L V+IADVS+Y+ + LDREA R Sbjct: 244 RKDLRHLPIITIDGDDAKDLDDAVYVEKLKNGNYKLIVSIADVSHYIPEGSVLDREAYKR 303 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G SVY +V+PM P+ +SNG+CSLNP D+L CEM + KG++ Y++V+ + Sbjct: 304 GNSVYLVDRVLPMFPKEISNGICSLNPNEDKLTFTCEMEIDKKGKVVDSDTYKSVIKTAY 363 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 R+TY V ++ GD++ + YAP+ + ++ L K++ + + +RG I F+ E K + + Sbjct: 364 RMTYNNVNKMIAGDEETLKTYAPIKDMVMDMLELSKIIREVKYKRGSIDFDIPEIKLVLD 423 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + ++E I+ R ++ ++IE+ MI AN + A + + P+++R H+KP E I + Sbjct: 424 EKGKVEYIKSRDRGESERIIEDFMIAANETVAEKLFWLEIPSVYRTHEKPDMERIKNLNE 483 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 LA+ + + P+ + +++E +R ++ M+L ++KQA Y EN GHFGLA Sbjct: 484 TLAKFKYRIHSLEEIHPKQFQKIIEDSKERGINLLVHKMILMALKQAKYTVENYGHFGLA 543 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Y HFTSPIRRY DLT+HR + +L + +MEE+ H S Sbjct: 544 SGYYTHFTSPIRRYADLTVHRILNSVLHGYPNKKTIIK-------NMEELPVTCAHISKT 596 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER A + + ++M+D+VG + I + F +D ++ V S + Sbjct: 597 ERAAMKVEDESVKIKLVEYMMDKVGEEYDATIVGFSNKRVFFETED-HVECFWDVVSAKH 655 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 YY FD + +G+ Y +GD+ +V + ++ E +I+ + Sbjct: 656 -YYEFDDREYVMRDTDTGKFYSIGDKYKVTLVRASLSELEIEVT 698 >UniRef50_Q5SJU8 Exoribonuclease n=3 Tax=Thermus RepID=Q5SJU8_THET8 Length = 744 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 236/746 (31%), Positives = 368/746 (49%), Gaps = 34/746 (4%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E +LE K +P +E+ +E E L+A+ G L + + Sbjct: 2 QETLLEFFKKTGRPHRLEEILHRFGLEKREAKAH----LKALVARGLLEKKGSRYFL--- 54 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 + V+G + HRDGYGF+R+ DL++ GD V A+ + R GR Sbjct: 55 -ANRVQGPLSLHRDGYGFVRLPEG--DLFVPPGYTGDAWPGDLVEARVMPPGRDGRPWGV 111 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + RVL ++VG G ++PD+ L ++ + P+ + G + G +VV++ Sbjct: 112 VERVLKRARERLVGTLDFRKGRALLLPDEPNLP-ELPLAPEGLEGLKRGSRIVVQV---- 166 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 + G + LG+ + + + + +P+ V ++ + E+PE R Sbjct: 167 HYGKRPYGTFLAYLGEGEAPETETEAVIAKYGLRAEFPEEVLKEAEAIPLEIPEAELRRR 226 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 D R L + TIDG DA+DFDDA++ E+ GG +R+ V IADVS+YV+ + LD+EA RG Sbjct: 227 EDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEGSLLDQEAFLRG 285 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY P +V+PMLPE LSNG+CSL P DRL + + ++ ++ +F E V+ S AR Sbjct: 286 TSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVRFREGVIRSVAR 345 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 LTYT+V L E++A L + L L +L + + + R + G + F E K Sbjct: 346 LTYTEVEAF-AEGFGLPEEHAFLAEDLRLLLDLTQRMREKRLKEGALDFAFPEVKVEVGE 404 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 E + I Q + A LIEE M+LAN A ++ + P LFR+H++P +A R Sbjct: 405 EGELHLIPQAEP-KARSLIEELMLLANRLVAEYLVQKGLPGLFRVHEEPVQDAYEKLRQA 463 Query: 501 LAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL 560 LA LG LP + L + RP+ ++ ++LRS++ A Y PEN GHFGLA+ Sbjct: 464 LARLGYTLPPKLSGH--ALQKALLASRGRPEEPVVAYLVLRSLRLARYAPENLGHFGLAM 521 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAE 620 + Y HFTSPIRRYPDL +HR +K L + E + +H S E Sbjct: 522 EHYLHFTSPIRRYPDLVVHRVLKAALRRTLTPARKA-------RWQEAFPAIAEHASEME 574 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R+A+ A R++ + + VG F G ++ V FG FV L + ++GLV + +L Sbjct: 575 RKAEAAERELTKYYMAKWAELHVGERFLGKVTGVANFGAFVTLPN-GVEGLVRLEALG-- 631 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE 740 Y + + L+G G+ RLGD +EVR+ N R++D + K +E Sbjct: 632 PYTYSEEAMALLGPK-GRRIRLGDEMEVRIAGANPRLRQVDLLPVE---EAPKKTKNRKE 687 Query: 741 KAKKGDAGKKGGKRRQVGKKVNFEPD 766 KAK+ + K G + + E Sbjct: 688 KAKEVEMRKVVGPPKDRARDTRPERA 713 >UniRef50_B1C6T0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6T0_9FIRM Length = 704 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 216/715 (30%), Positives = 382/715 (53%), Gaps = 14/715 (1%) Query: 13 KYANPIPSREFILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFT 71 K + E I+ + KP ++ A + + Q L L + ++ ++ + Sbjct: 2 KNDKLLYLSEQIISVMENDEYKPMKFNDFAFIFDMHSKNQKNLLSNSLNYLIKEKKIKYI 61 Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGA 131 + P ++ +G R +GF+ VEG +D+++ + GD+V + + Sbjct: 62 NNR--YSPTCSNIYEGVFEKGRGLFGFVNVEGLDEDIFVVGSESMDAFSGDKVKVEVIKE 119 Query: 132 DRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 R RE RIV + Q VG ++ E GFVV D+ + DI IP I A+ Sbjct: 120 KEGDRKREGRIVEITEKVKRQTVGTFYKEKTFGFVVSDNPNFTNDIYIPKAGIKYAKNKD 179 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE 250 VVVE+T P + VGKI +VLG G+ ++ + +++PY + ++ L+ Sbjct: 180 KVVVEITDFPKDKKNWVGKITKVLGRKDENGVDIEALIYEYDVPYEFSHLALKEADELEF 239 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + ++ K R DL D+ + TIDG A+D DDAV KK + L V IADVS YV+ ++ Sbjct: 240 DSFDKFKGKRKDLTDVNIFTIDGPTAKDLDDAVSIVKKEN-EYVLSVHIADVSNYVKRNS 298 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 +D++A RGTS+YF +VIPMLP+ L LCSLNP+ ++ +M ++ +G+L Y F Sbjct: 299 EIDKDAYERGTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMRINKEGKLLDYNF 358 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 Y++++ S A+ Y +V + G +DLRE+Y + L + LY++L + R G + F+ Sbjct: 359 YKSIIKSKAKFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLRQRRYVEGNLDFD 418 Query: 431 SEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPS 490 +E FI + + +R A ++IE+ M++AN SA F ++R+H++P Sbjct: 419 VDE-NFITVENGVVTDVSLRERGIAERIIEQFMLVANTSACEFFSSMGLNGIYRVHEEPD 477 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 E ++ F LG +L + ++ E L+++ + ++ +T+LLR MK+A+Y Sbjct: 478 KEKLSGFIKFANALGYKLRLHDGHYSKELEEFLKTIEGDKNEQLFKTVLLRCMKKAVYTT 537 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 EN+GHF LA+++Y HFTSPIRRYPDL +HR + +L + E+M Sbjct: 538 ENKGHFALAIENYTHFTSPIRRYPDLMVHRILSNILLG-------NIDLNNLEKEREKME 590 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + H S ERR++E R+ C +M + + ++G +S + G +V+L++ I+G Sbjct: 591 KKANHLSKMERRSEEMERESDKIFICQYMENFIDEEYEGRVSGFSSKGMYVKLNNS-IEG 649 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 +++ ++L++DYY +D+ L+G G+ + +GD++ ++V +V+ +R+++F +I Sbjct: 650 VIYFTNLNDDYYIYDEEHYSLVGRDFGRRFTMGDKINIKVISVSKLKREVEFCII 704 >UniRef50_B8DP48 Ribonuclease R n=10 Tax=Desulfovibrionales RepID=B8DP48_DESVM Length = 1037 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 263/787 (33%), Positives = 396/787 (50%), Gaps = 24/787 (3%) Query: 9 REAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQL 68 ++ + + +P + + +P D L L + + L RL + R G++ Sbjct: 3 KKKREESYVLPDANDLATLFREAHRPLKIDALMRMLGLHRRM-KKELEDRLDDLVRQGRI 61 Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQ 127 + R + L E+L LV GT+ R G GF+ E + DD+Y+ QM HGD+V+ Sbjct: 62 IRLRGGAWGLVEQLRLVTGTLSIQRSGMGFVLPEEKGRDDIYVHPYQMGDAWHGDKVVVA 121 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVG--FVVPDDSRLSFDILIPPDQIM- 184 L E RIVRVL +I R G P D R++ ++ + Sbjct: 122 LLPGRHGKNPEGRIVRVLERGRKEIPARVVRRMGRHSLLCRPADPRMAVSFVVDMSAVEE 181 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A G +VV + + VLG + + + H++P +P V ++ Sbjct: 182 KAEKGDLVVAAPGE-KVEDGLWAATGLAVLGADDNVLVQERLVKINHDVPGDFPPEVLEE 240 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 L + GR+DLR L VTIDG ARDFDDAVY E++ G +RLWVAIADV++ Sbjct: 241 ARDLPAVPGRDDMEGRIDLRHLEFVTIDGAKARDFDDAVYVEEQGTG-YRLWVAIADVAH 299 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVRP + +DREA+ R S YFP V PMLPE LSNGLCSLNP+V RL MV E + G Sbjct: 300 YVRPGSAMDREAQARSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAETFFYADGT 359 Query: 365 LTGYKFYEAVMSSHARLTYTKVW-HILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE 423 KFY A++ S ARLTY +V I++ D+ R P++ LE L ++L+ R E Sbjct: 360 PGRSKFYAAIIESKARLTYGQVNRAIIEKDEKERRLLTPVLPLLERAEALARLLNAKRSE 419 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 RG + F+ E + IFN I + R+ H++IEE MI AN + ARF+ + L+ Sbjct: 420 RGSLDFDLPEPEVIFNIYGETVDIGRKVRHFGHQIIEEFMIAANEAVARFLTEKNARFLY 479 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R+H +P TE + VL L K + +L++ ++ M LR+M Sbjct: 480 RVHPEPDTEKLEGLFKVLGRTSLAQHLPGKASAKALQGVLQAAKGSDQEFLVNRMALRTM 539 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 QA Y P++ GHFGLA + Y HFTSPIRRY DL +HRA++ L G Sbjct: 540 MQARYAPDHEGHFGLASECYCHFTSPIRRYADLVVHRALRRTLG---------LPVNGPL 590 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 +L + + ER A EA R++ + F+ ++VG F GVIS + FGFFV Sbjct: 591 PGERALLTIADTLNTNERVAMEAEREILKRITVLFLSERVGEEFTGVISGIIDFGFFVEF 650 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 +++ +G+V +SSLD+DYY + Q L+GE +G+++RLG V VR+ VN+ +++ + Sbjct: 651 NEVMAEGMVRLSSLDDDYYGYLPERQELVGERTGRSFRLGQTVTVRLAEVNVARLEVNLA 710 Query: 724 LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKD 783 L + +E+ ++ D G + G+ + G+ S GE+ +P+ +D Sbjct: 711 LAGPDAVAST--GVRKERRERRDYGGRSGRDARGGRGARPGERS---GERSGRPE--GRD 763 Query: 784 ARKAKKP 790 AR + Sbjct: 764 ARTGIRQ 770 >UniRef50_Q04E22 Exoribonuclease R n=2 Tax=Oenococcus oeni RepID=Q04E22_OENOB Length = 726 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 232/727 (31%), Positives = 378/727 (51%), Gaps = 33/727 (4%) Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REA 139 + + GT + + G+GF++ + +DDL++ + D+VLA + + GR E Sbjct: 8 SENFINGTFVANPKGFGFVKTDEGQDDLFIGHSNTNLAMQSDEVLASIIHPGKDGRVPEG 67 Query: 140 RIVRVLVPKTSQIVGRYF---------------TEAGVGFVVPDDSRLSFDILIPPDQIM 184 +I ++L ++VG + +G + +D +L + + + Sbjct: 68 KIEKILSHANQEVVGIFRSGVNENDLPNRSNLNPNDYIGTITFNDEKLQEYKYLVDKKGL 127 Query: 185 GARMGFVVVVELTQRPTRRTK--AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 + V +Q PT +G + V+G + G+ + + + +IP +P+ Sbjct: 128 QPQDRDSVTATTSQFPTSDRPNLLIGSVTNVIGRSDAPGVDILEIVYSLKIPSNYPEDAA 187 Query: 243 QQVAGLKE--EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 QQ + + +V GR D RD PL+TIDG D +D DDAV K G + L V IA Sbjct: 188 QQAKNIPQTIDVKAAEAEGRPDFRDQPLITIDGADTKDIDDAVVVWKLPNGNYHLGVHIA 247 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DVS YV T LD EA RGTSVY +VIPMLP +SNG+ SLNP DRL M CEM ++ Sbjct: 248 DVSNYVPLKTSLDAEAYKRGTSVYLTDRVIPMLPTEISNGIASLNPNEDRLAMSCEMEIN 307 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +G++ +K +++ SHAR+TY + IL GDQ +YA L + + ++ +L+K+L Sbjct: 308 QEGQVVKHKIQPSIIRSHARMTYDSINKILDGDQAETAKYADLSEMIHQMGDLHKILAAM 367 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R++RG I FE++EA+ I +A+ + R ++IE M+ AN + A + P Sbjct: 368 RKKRGAIEFETDEAEIIVDAKGHPTDVLVRDRGIGERMIESFMLAANETVAEHFDHLHVP 427 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTML 539 L+R+H+ P + + +F + +G + P+D+ L++VA P+ M+QTM+ Sbjct: 428 FLYRVHEVPEGDKVVNFFEFMRAIGHPIKADPKNLRPKDFQAALDAVAGLPEEMMIQTMM 487 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LR+ KQA Y P+ GHFG+A + Y HFTSPIRRYPDL +HR IK+ G Sbjct: 488 LRATKQAHYSPQPIGHFGIAAKFYTHFTSPIRRYPDLVVHRLIKHYAKFGTGPSSTDAVR 547 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 G ++ Q+G S ERRA +A R D ++M D +G+++ GV++S FG Sbjct: 548 G-------KLPQIGIDTSERERRAVDAERATNDMKFAEYMEDHIGDIYDGVVNSALKFGL 600 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 F+ L + I+GL H+S++ +D Y++D+ Q L+G + + + +G +V+VRV N + RK Sbjct: 601 FISLPNT-IEGLAHISTMKDDIYQYDETRQALIGRTKHRIFAIGQKVKVRVINANKETRK 659 Query: 720 IDFSLISSERAPRNVGKTAREKAKKGD----AGKKGGKRRQVGKKVNFEPDSAFRGEKKT 775 IDF LI + AP + A E + G + Q ++ N A++ K Sbjct: 660 IDFELIDPQSAPVTKIRLAAEPERHSFHHDHNGDHHNHQHQENRQNNRHQKGAYKSTGKY 719 Query: 776 KPKAAKK 782 + + ++ Sbjct: 720 RLRGGRR 726 >UniRef50_B4D6L0 Ribonuclease R n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6L0_9BACT Length = 727 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 243/735 (33%), Positives = 379/735 (51%), Gaps = 50/735 (6%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 +E I + L +P + EL+ L +Q LR LR +E G++ R+ Y LP Sbjct: 14 KERIRQLLRNPNYRPLDKVELSKALRWPS-DQRAELREALRELETAGEIARIRKDRYVLP 72 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR- 137 + DLV G + H +G+ L E D+++S+ + T +H D+V+A+ + R+ RR Sbjct: 73 QTADLVTGILQVHANGHAHLLSETPGVKDVFISAPNLGTAMHSDKVVARLMHEGREQRRG 132 Query: 138 ---EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 EAR++++L IVG + +V+PDD RL +I + P+ GA++G VVV Sbjct: 133 GAQEARVIKILERANDTIVGTLQSSKNFFYVIPDDPRLQHNIYVKPE-PKGAQVGDKVVV 191 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 + +R G+++EVLG G+ + +R +++P +P AVE++ + E V Sbjct: 192 RFEEWESRHVNPEGEVIEVLGPAHAPGVDMLSIIRKYQLPMAFPDAVEREAEKIFETVHP 251 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 + A R D R +VTID +DA+DFDDA++ E+ G WRL V IADVS+YVRP PLDR Sbjct: 252 DEIARREDCRGQFIVTIDPDDAKDFDDAIHVERLARG-WRLGVHIADVSHYVRPGHPLDR 310 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EAR RG S Y +VIPMLPE LSNG+CSL P V+RL + G++ +F +V Sbjct: 311 EARKRGNSTYLADRVIPMLPERLSNGICSLKPGVERLTFGAFIDFDESGKIRKARFARSV 370 Query: 375 MSSHARLTYTKVWHILQGDQDLREQY-------------------APLVKHLEELHNLYK 415 + S ARLTY + IL+ L + ++ L Sbjct: 371 IKSAARLTYRQALAILEDRPVPATPNYERGGKVHLDAKPVPLNVTPELRERVKLAWELAS 430 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 +L K R G + + E K + + R R+E+ + +H+L+EE M+ AN A+ ++ Sbjct: 431 LLRKNRFAAGSLDLDFPEVKVWLDDQGRAVRLEKMDNDISHQLVEEFMLAANEVVAKALK 490 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 K P ++RIH+ P + + +R + G G+ + R+ LL + +P+ L Sbjct: 491 DRKIPTVYRIHEDPDPDRLADYRELAISYGFR--AGDLTQRRELQRLLAATRGKPEEYAL 548 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 + LL+S+K+A Y + GH+GLA +Y HFTSPIRRY DL +HR LA E+ Sbjct: 549 KLGLLKSLKRARYATDPVGHYGLAKVNYTHFTSPIRRYADLLVHR----ALAGEKLGGVG 604 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV----GNVFKGVI 651 + ++ H S ER + +A RD K +F Q+ + ++ Sbjct: 605 ------------AVGEIAAHISTTERTSADAERDSTMLKKMEFFQRQLTARRPEEMRAIV 652 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 V +G V L D I GL+HVSSL +D+Y+FD R +G +TY++GD ++V V Sbjct: 653 VDVRSYGLVVELPDCLITGLIHVSSLPDDFYQFDSTRLRFVGRRKNKTYQIGDVLQVIVS 712 Query: 712 AVNMDERKIDFSLIS 726 V+ +R+IDF + Sbjct: 713 RVDAYKRQIDFVPVK 727 >UniRef50_C5NWX7 Ribonuclease R n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWX7_9BACL Length = 708 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 233/710 (32%), Positives = 357/710 (50%), Gaps = 13/710 (1%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E I + K EK S ++L +L+IE ++ L + + +ER + + + + Sbjct: 3 EKIEKIF-KEEKVLSIEDLKEKLNIESAKEFVELVKNVGKLERKSVVTQLPSEKFLYVKE 61 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REAR 140 ++G + H+ G+ F+ ++Y+ ++ + GD VL + + R E Sbjct: 62 ALEIEGVIRLHQKGFAFVYSADLGIEVYIPKGFTQSAMTGDVVLVKVDSVYKDDRNLEGI 121 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + +VL T VG FV DD + I I + G V+VE+T Sbjct: 122 VQKVLERNTKYTVGTLTNAKFFSFVKSDDKNIVKYIKITNAKNFNLVDGSKVLVEITDYS 181 Query: 201 TRR-TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAG 259 G I++ +G G+ + + H IP +PQ V +Q + +E+ E Sbjct: 182 KVSFEDHKGIIIKSIGHKDDPGVDILSVIYKHNIPNEFPQEVLEQTEKISDEIKLED--K 239 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 D + +VTIDG+DA+D DDA+ K + G +RL V IADVS YV +PLD+EA NR Sbjct: 240 YRDCTNEMVVTIDGDDAKDLDDAISVIKTKKG-YRLKVFIADVSRYVTEDSPLDKEAANR 298 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 G SVY +V+PMLP LSN +CSLNPQV R + C++ ++KG Y Y AV+ S Sbjct: 299 GCSVYLADRVVPMLPRKLSNNICSLNPQVLRYTICCDIDFNTKGFPESYDIYPAVIKSKG 358 Query: 380 RLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 RLTY KV + +++ E+Y V L+ L + RE RG I F+ E+K + + Sbjct: 359 RLTYKKVNEVYADNKETIEEYKEYVPMLKTALELSTKIRANRETRGAIDFDKPESKVVVD 418 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 + I +R + KLIE+ M+ AN + P ++RIH++P E + F Sbjct: 419 ENGEVLDIVLRERGISEKLIEDFMLSANEVIGEHFYWMQVPFIYRIHEEPKMEKLRQFFD 478 Query: 500 VLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 + A LG G + EP A +L ML T+LLR+M QA Y N GHF L Sbjct: 479 IAASLGYRTKGKIEEIEPYMLANMLRKFKGEVVETMLSTILLRTMNQARYSINNIGHFAL 538 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRYPDL +HR I+ L + + L + S Sbjct: 539 ATKYYTHFTSPIRRYPDLLVHRMIRTYLFNGDVSDQTIDNF------ISRLPDLAESSSE 592 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 E+RA + R+V KC++ML F+G++SSVT FG F+ L+ I+GLVH+ +++ Sbjct: 593 YEKRAVDCEREVDRMKKCEYMLKYQEQTFRGIVSSVTNFGVFITLERSNIEGLVHIKAMN 652 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 +DYY +DQ L+G + YRLGD V V+V V+++ ++IDF ++ + Sbjct: 653 DDYYTYDQKNMLLIGRRKKKVYRLGDEVIVKVANVDLENQEIDFKILKHK 702 >UniRef50_B3QPD3 Ribonuclease R n=12 Tax=Chlorobiaceae RepID=B3QPD3_CHLP8 Length = 798 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 226/751 (30%), Positives = 362/751 (48%), Gaps = 57/751 (7%) Query: 23 FILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 I+ LT + ELA ++ QL G L ++ DG + +CY Sbjct: 57 EIISFLTDHEGERFRSVELAKKMGYGESRQLPGFWYVLHKLQEDGVVDKDSNRCYGWAGL 116 Query: 82 LD-------------------------LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMK 116 +G + H +GYGF+ VEG DD+++ ++ + Sbjct: 117 EPDTYEEHLVEGRHFPQPGKERYKVDQTYQGKLTTHPNGYGFVDVEGFDDDIFIGADMLG 176 Query: 117 TCIHGDQVLAQPLGADRK--------GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPD 168 +HGD+V R E IV V+ K + IVG E + PD Sbjct: 177 QSLHGDEVEVLVTKVPETYVSKQSPHQRCEGLIVNVVSRKLTTIVGTLQRENRRFLLKPD 236 Query: 169 DSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 ++ +I I A+ G V+ + + +++E+LG + + V Sbjct: 237 QRKILPEIHISVKDAKKAKDGAKVLAGDLEF-LKNGTIQARVIEILGQAGESQVEVSAIA 295 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 R I + Q + ++EE+ +E R+D+RD + TID DA+DFDDA+ EK Sbjct: 296 RGLGIDETFEQELLTFAEKVREEITDEDLKERLDIRDKDVFTIDPVDAKDFDDALSIEKL 355 Query: 289 RG-GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 GG+++ V IADVS+YV ++ LD+EAR R TSVY +VIPMLP LS +CSLNP Sbjct: 356 GNGGGYKVGVHIADVSHYVPENSALDKEARKRATSVYLVDRVIPMLPSRLSEKVCSLNPG 415 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHL 407 VDR+ ++ KG + ++F++ V+ S R TY V I+ + V+ L Sbjct: 416 VDRMAFSVFFNITKKGEVKKFEFHKTVIHSKRRFTYEDVQQIIDAGKG------DYVEEL 469 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + L +L K + R E GG+ FE+EE +F + + + +R D+H+LIEE M+LAN Sbjct: 470 QALESLSKTIRAQRMESGGLEFETEEVRFKLGSNGEPVEVIKKERLDSHRLIEEFMLLAN 529 Query: 468 ISAARFV-------EKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP------ 514 + A ++ EK P ++R+H P E + + + ++G +L K Sbjct: 530 RTVAAYLTARYAENEKNPHPVIYRVHGAPQMERVQVLANFVRKIGFDLKLDRKGKDSATV 589 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 R ELL+ V ++ ++LRSM +A+Y N GHFGL + Y HFTSPIRRYP Sbjct: 590 SSRALRELLQKVHGTNVEFLVNELVLRSMSKAVYMSSNDGHFGLGFEHYTHFTSPIRRYP 649 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL +HR + + + T E + ++ Q + E+ A EA R+ Sbjct: 650 DLVIHRILFEYETTRKKRRKVTPE--RITEISATITEVCQITNEREKIATEAERESVKLK 707 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 + ++M +GN + GVI+ T +G +VR+ D I+GLVH+ +L +DYY +D+ L+G Sbjct: 708 QVEYMSSHLGNTYGGVITGATEYGIYVRMTDFAIEGLVHMRNLKDDYYEYDEATYSLVGR 767 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + ++G R++V+V V++ R ID +L Sbjct: 768 RKHRRLQIGQRLKVKVHEVDLTRRTIDLTLA 798 >UniRef50_A3ZQN3 Ribonuclease R n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQN3_9PLAN Length = 770 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 215/772 (27%), Positives = 366/772 (47%), Gaps = 32/772 (4%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD----- 83 +P +A +L++ EE L+ L+R ++ + + G + + + Sbjct: 16 RSTYQPVKPKVIAKQLNL-AEEDLKTLKRAIKRLLKKGHIAYGASHLIKRANAENAKAAQ 74 Query: 84 LVKGTVIGHRDGYGFLRVEGRKD------DLYLSSEQMKTCIHGDQVLAQPLGA---DRK 134 + G G+GF+R G D+Y+ +++ +GD V + + + Sbjct: 75 TIVGGFHRTAKGFGFVRPLGTPKSAERTADIYVPAKRTSDAANGDTVRIRMFRTRGMNGE 134 Query: 135 GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 + ++ ++ +T + VG Y G V D + + I + + GAR+ VV+ Sbjct: 135 SKLCGEVIEIVERETHRFVGTYNEAHGQALVQVDGNVFTQPISVGDPGVKGARLDDKVVI 194 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPE 254 E+ + P+ G IVEVLG G+ + +R +++P +P+A + + + E Sbjct: 195 EIVRFPSHFHDGEGVIVEVLGARGAPGVDLLSVMREYDLPEEFPEAALEVAREMADAFDE 254 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 R D ++TID DARDFDDA+ K G W L V IADV+++V + LD Sbjct: 255 SIGEDRRDETGETIITIDPFDARDFDDAISLTKLDNGHWLLGVHIADVAHFVPEGSALDT 314 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EARNR TS+Y P +VIPMLPEV+SN L SL P R ++ + G + + + Sbjct: 315 EARNRATSIYLPDKVIPMLPEVISNNLASLQPNKIRYAKTAKIEFTPDGTRVHTEVFNSA 374 Query: 375 MSSHARLTYTKVWHILQGDQDLREQY-APLVKHLEELHNLYKVLDKAREERGGISFESEE 433 + S R TY +V L +++ P+ + + ++H L L + R +RG I E Sbjct: 375 IRSVRRFTYEEVDEYLADRDAWKKKLTPPVHQLVGDMHELAMTLRERRFQRGSIELLMPE 434 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K + + + + ++H++IEE M+ AN + A + + L R+HD P Sbjct: 435 LKLDLDNDGAVTGAHVEKNTESHQIIEEFMLAANEAVADKLHNQELFFLRRVHDSPDPRK 494 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + + ++G+E + + L+ V P+ + LRSMK+A+Y PE Sbjct: 495 LEALTEFVRDVGIECD--SLQSRFEIIRALDKVKGLPEQAAVNYATLRSMKKAVYSPEEI 552 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GH+ LA + Y HFTSPIRRYPDLT+HR L ++ Q + M+ G Sbjct: 553 GHYALASECYCHFTSPIRRYPDLTIHRMYNDLATGKKPVQ-----------DYDAMVAEG 601 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 +HCS E+RA A RD+ + + +++G + VI+ V FG FV+ +L DGL+H Sbjct: 602 EHCSQREQRAASAERDLVKIKLLNHLSEKIGMEMEAVITGVESFGLFVQGLELPADGLIH 661 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRN 733 + +L +DYY +D+ L+G G +RLGD ++V + V++++R++DF LI E Sbjct: 662 IDALQDDYYHYDRTTHSLVGNRDGNAFRLGDVLKVSIARVDLEKRELDFRLIEQEAR--- 718 Query: 734 VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDAR 785 A + +++ + + P G+ + K AKK R Sbjct: 719 AAGHAADNSRRRPTSGRTASDDFSYQSGKPAPKKKNFGKPERKQGKAKKRKR 770 >UniRef50_C7NCL8 Ribonuclease R n=7 Tax=Fusobacteriaceae RepID=C7NCL8_LEPBD Length = 761 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 217/734 (29%), Positives = 372/734 (50%), Gaps = 25/734 (3%) Query: 6 FQEREAEKYANPIPSREFILEHLTK--REKPASRDELAVELHIEGEEQLEGLRRRLRAME 63 ++E +K E L++L + E + E+ L +++ ++ L A E Sbjct: 34 NAKKENQKTQKMELKEEQELKYLRQVLAEYEFTFQEILQLLEWSQKKRK-MYKQLLNAWE 92 Query: 64 RDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQ 123 G + R Y LPE+ VKG + +GFL + + +++ + T ++GD Sbjct: 93 ESGDIYLKRNGRYTLPEKEGFVKGEISISSGNFGFLDI-NGEASVFIPGAYLNTAMNGDT 151 Query: 124 VLAQPLGADRKG--RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 VL + L G +RE + +V+ + IVG + GFV P +S DI IP Sbjct: 152 VLVRILKQSSDGTKKREGEVYKVIKRNRNVIVGVFENNLSFGFVRPRNS--PKDIYIPKK 209 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 I GA+ G +V V++ K G IV +LG T + L I +P V Sbjct: 210 LIRGAKTGDLVAVKVDFWGDEERKPEGAIVSILGSPKDTEALISSLLLNEGIEEKFPNEV 269 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q++ + E++ +E R DLR L ++TIDG DA+D DDAVY EK G ++L+V+IAD Sbjct: 270 LQELDKIDEDISDE-LKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIAD 327 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSYYVR +T LD +A RG S+Y +VIPMLP LSN LCSLNP D+L EM + Sbjct: 328 VSYYVRENTELDMDALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDK 387 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE------QYAPLVKHLEELHNLYK 415 +G++ FY++V+ S R+TY V IL+ +++ E +Y + + L+ + L K Sbjct: 388 RGKVVKNDFYKSVIKSKYRMTYENVNTILEKNEESEEYKVLYDKYRKIDEMLKNMLELSK 447 Query: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475 ++ ++ RG I FE E K + + + ++ I R +A ++IE+ M++AN + A + Sbjct: 448 IIRNNKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLF 507 Query: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 + PA++R+H+ P + + L + G L G + P + ++E P+ ++ Sbjct: 508 WEEIPAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLI 567 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 ++LR+M++A Y +N GHFGLA + Y HFTSPIRRY DL +HR + + + Sbjct: 568 HKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRML------GRSIEKF 621 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 E Y + S ER AD+ D ++M D++G V+ +S + Sbjct: 622 MNEKEKAKYG-ANFEAIASSISRTERVADKLEEDSVKIKLIEYMQDKIGQVYIARLSGMN 680 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 F+ L++ I+ + +V++ D + +D+ +++ + + ++Y +G ++V + + + Sbjct: 681 KNKIFMELEN-HIEVVYNVTT-ARDNFIYDEENFKIVDKRNNESYTMGSTMKVSIVSASY 738 Query: 716 DERKIDFSLISSER 729 + +I+ E+ Sbjct: 739 AKMEIEVIPYVEEK 752 >UniRef50_Q14Q19 Probable ribonuclease r protein n=1 Tax=Spiroplasma citri RepID=Q14Q19_SPICI Length = 705 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 226/713 (31%), Positives = 376/713 (52%), Gaps = 18/713 (2%) Query: 22 EFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 E I+ L K+ KP ELA L+I + + L + L +E D + T++ + + Sbjct: 3 EQIVAILKKQTKPIDTIELAQLLNINKIDDNKMLLKALVELENDNIIGVTQQHRFYYFDP 62 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK---GRRE 138 ++G + ++ G+GF+++ +++ Y+ + + + DQVL + E Sbjct: 63 KIYLRGVISINKKGFGFIKINENQEEYYVKQDDLNNALDQDQVLFILKKQKNDNNSKKAE 122 Query: 139 ARIVRVLVPKTSQIVGRYFTEA-GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 A++++VL +VG ++ +++L+ + A +V +T Sbjct: 123 AQVIKVLKRNNEYVVGVIKKNRHQQKYLEILNNKLTQY-RAEIINLDEAIENTIVKGIIT 181 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE-- 255 ++ KI+E++G+ G+ V L I + + + + + + Sbjct: 182 SINSKNNLMQVKIIEIIGNTNQVGVDVLAILHEFNIRTKFNEEALTEANQINQNIDVATM 241 Query: 256 -AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 A R DL+ VTIDG D++DFDDA+ +K + G + L VAIADV++Y ++ LD+ Sbjct: 242 LANKSRRDLQTEMFVTIDGNDSKDFDDAILVKKNQNGNYLLLVAIADVAHYAPHNSYLDK 301 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA RG SVY +V+PMLPE LSNG+CSLNP RL ++CEM + +G + YEAV Sbjct: 302 EAFERGCSVYLIDRVVPMLPEKLSNGICSLNPFEPRLTLICEMEIDQQGHVVNSSIYEAV 361 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S ARLTY +V + +++ A + + L LY++L +E G + F+ +E Sbjct: 362 IISKARLTYDEVNKLFCQEKN--HISAEIAQMLFLAQQLYQILVWKKEHDGVVDFDLDEP 419 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 KF+ + +I+ I +R DA KLIE MI AN + A + P ++R+HDKP + + Sbjct: 420 KFVVDKNGKIKDIIVRERADAEKLIESFMIRANETVAETIYWMDLPFVYRVHDKPKPKKL 479 Query: 495 TSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + L+ LGL + G +D ++L + D+ + +++ ++LRSM++A Y N Sbjct: 480 FDLYTQLSYLGLNIKGKLENIHSKDLQQILNKLKDKENFKVISALVLRSMEKAKYSDIND 539 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y HFTSPIRRYPDL +HR +K L + + + +T + + Sbjct: 540 GHFGLASWCYTHFTSPIRRYPDLVVHRLLKEYLFQGKVKITDLEQTRAF------VSHAS 593 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 Q S+AE RA E R+V + ++M D++G + G+I+ VT FG FV L + I+GLVH Sbjct: 594 QQSSLAELRAMECEREVDKMKEAEYMEDKIGYEYNGIIAGVTSFGIFVELPNT-IEGLVH 652 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ L NDYY FD+ +L+GE + Y LG +V +RV+ + R+IDF L+ Sbjct: 653 ITDLKNDYYVFDEKSLKLIGERKRKEYFLGKKVRIRVKKASKKLRQIDFELVD 705 >UniRef50_Q6MQN7 Ribonuclease R n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQN7_BDEBA Length = 858 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 256/738 (34%), Positives = 386/738 (52%), Gaps = 18/738 (2%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 ++ ++ GT+ H DG+GF + ++ D+Y+ M+ + D+V + R Sbjct: 2 QKKKILTGTIKRHPDGFGFFIPDDKEHPDVYIPRHSMEGIMTNDKVAVEVTPEKGGERFR 61 Query: 139 ARIVRVLVPKTSQIVGRYFT-EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 + VL T +VGR+F G + + D+ I + M A+ +V E+T Sbjct: 62 GELDHVLSRGTKTVVGRFFKMNERTGLIRDEGKGWGQDLKIKIEDSMQAKDKELVAAEIT 121 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 P GK++E++GD M + +R + IP + +A ++ E E+ Sbjct: 122 SYPDDGKPFTGKVIEIIGDAMDPLTDLKRVIRANHIPLEFSKATLEEAEHFSEVPDEKDF 181 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLRD L+TIDG A+DFDDAVY E G + L+VAIADVS+YV+ T +D++A Sbjct: 182 KGRRDLRDKALITIDGATAKDFDDAVYVETLNEG-FLLYVAIADVSHYVKIGTAIDKDAY 240 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY P+ V+PMLPEVLSNGLCSLNP V RLC+V EM G L FYEAVM S Sbjct: 241 ERGTSVYMPNFVVPMLPEVLSNGLCSLNPHVPRLCLVAEMLFDFTGELVKSDFYEAVMES 300 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 AR+TY + I+ G++ E++ + H+ L +L K+L R + G + E E + + Sbjct: 301 KARVTYGEAQEIIDGNEV--EKHKHVKDHILRLSDLAKILMAKRFKEGSLDLEIPETELV 358 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + I++++R AH+LIEE M+ AN++ A+F+ + PAL+RIH+ P+ AI + Sbjct: 359 IDGAGVPVDIQRSERLFAHRLIEEMMLAANVAVAKFLSSREIPALYRIHEPPNEMAIRTL 418 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 LA G + G+ + + LE RP+A++L + LRSM QA Y+ N GHFG Sbjct: 419 EKYLANFGGKTKLGSGKLQKRLTKALEEFEGRPEAQILNILTLRSMSQAKYNMNNVGHFG 478 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L + Y HFTSPIRRYPDL +HR +K + S +++ G S Sbjct: 479 LGFEFYTHFTSPIRRYPDLIVHRLLK---------TQVMPNSRYRLMSEDDLATAGTILS 529 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 AE+R+ +A R V K FM +G F G+ISSV FG FV L + IDGLV + L Sbjct: 530 AAEQRSTKAERQVQSIKKARFMQKFIGQEFDGMISSVAKFGVFVLLREYDIDGLVRLDDL 589 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 D + FD+ RL+ + SG Y +GD + ++V A + ++ +I+F+L E+ + +T Sbjct: 590 GGDRFEFDEENLRLVAKRSGFAYSIGDSIRIQVVAADPEQGQINFALAGLEKEEHDDART 649 Query: 738 AREKAKKGDAGKKGGKRRQV----GKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAK 793 E++ + G +R K + RGEK+ KA KD K K+ K Sbjct: 650 PAERSASAVLKRLHGDKRPKDHISHGKKKHQDREFERGEKRADKKAGNKDFGKKKEFGKK 709 Query: 794 TQKIAAATKAKRAAKKKV 811 + + K+ K Sbjct: 710 NFREEGPDRFKQKPGKSK 727 >UniRef50_C1SGC4 Ribonuclease R n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGC4_9BACT Length = 682 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 225/698 (32%), Positives = 378/698 (54%), Gaps = 24/698 (3%) Query: 25 LEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDL 84 L+ L + +KP + +L + ++ + L+R+LR + R + R + Sbjct: 5 LKILNRSKKPLTFKQLLSQSGLDAKT----LKRQLRDLVRQNKAEKYRNGTFVSKNTPTE 60 Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 + G + H +GYGFL +G D+++ +M +HGD+V +G++E R+V + Sbjct: 61 ITGKLDLHPNGYGFLSHDGEGRDIFIPKNKMNGAMHGDKV--TISPETFRGKQEGRVVEI 118 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + +IVGR AG+ VVP +++ I + +++ + VV+VELT P+ + Sbjct: 119 VERSEQKIVGRIENLAGIMRVVPMTRKVNTYIYLTSNKV-QYKDDTVVLVELTHFPSEGS 177 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 A G++ +VLG + +I L ++I ++P+++E+ V E+ + A R DLR Sbjct: 178 AARGQVNKVLGMLSDPRIEDEIVLNRYDIDKVYPESIEKYVEKTSPELMKNPGA-RTDLR 236 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 LP VTIDGE A+DFDDA+ EK + L+V IADV ++V+P TP+D EA RGTS Y Sbjct: 237 SLPTVTIDGETAKDFDDAISIEKTEN-EFILYVHIADVCHFVQPGTPVDNEAYRRGTSFY 295 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +PMLPE LSNGLCSL P DRL + ++T + G+ FY ++++S RLTY Sbjct: 296 FPEFAVPMLPESLSNGLCSLRPNEDRLALTAKITYTKDGQRKKAYFYRSIINSDRRLTYN 355 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 V +L +++ +E+ ++ L++ L + R + G + F+ E F + + Sbjct: 356 SVNDVL--EKNTKEKDKAILDLLKDSKELAGKIMVRRAKAGMLDFDFPETTFELDENGEV 413 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 I +R+ +H++IE MI AN + F+EK + +++RIHDKP + F + A Sbjct: 414 TAIIPAERHLSHRIIEHFMIEANEVVSEFLEKHTKKSVYRIHDKPDPMKLEDFAGLAATF 473 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 G+++ + P+D ++ E+V + A++L L+R+M +A Y+ N GHFGLA SY Sbjct: 474 GVDVTVKD-VTPKDVKKINEAVNNSDYADILGGALVRTMAKAEYNTNNIGHFGLASDSYT 532 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRYPDL +HR I L + ++S + + + E+RA+ Sbjct: 533 HFTSPIRRYPDLMVHRLICNTLFGTE------------YHSEAGLDDACKLSTENEQRAE 580 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 A RD++ + K ++ V F V+ SV FG + ++ + + G V + S+ D Y+F Sbjct: 581 NAERDISKFKKLKYLAKHVDEPFGAVVMSVGAFGLNIYIESVMLKGTVSLESIPGDVYQF 640 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 + Q + G +G+ +R D +EV VE ++MD ++ F Sbjct: 641 MKKEQIVRGRVTGKMFRAADLIEVMVERIDMDMQEAYF 678 >UniRef50_B5JNV1 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Verrucomicrobia RepID=B5JNV1_9BACT Length = 861 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 232/841 (27%), Positives = 380/841 (45%), Gaps = 63/841 (7%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE I+ + + + P + +A EL + +E+ L +R + G ++ + + +P Sbjct: 4 RERIIALMQQADYAPLDKSGIASELGLGKKERRN-LDYEMRLLLSKGDIIRIKGDSFCIP 62 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDD-----LYLSSEQMKTCIHGDQVLAQPLGAD-- 132 + +DLV GT+ + G L + + + + +++E +H D+V+ + A Sbjct: 63 KDVDLVTGTIKFRQKGSAILIPDAKAGEPKPKAIEIAAEDTSVAMHDDKVVVRLADAPPN 122 Query: 133 ----RKGR----------REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI 178 ++GR R++R+ +VG +V PDD R+ DI + Sbjct: 123 EPVWKRGRKQASAYQPTGPFGRVIRIQKRARETMVGTLCKTRFFHYVAPDDPRIIHDIYV 182 Query: 179 PPDQIMGARM----GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 PP + G VVV+L + R G+++ LG + L + + Sbjct: 183 PPPEESRLDPLPTVGSKVVVKLHEWEQRHVNPEGELIANLGKTHEPQAELMGVLHKYNLD 242 Query: 235 YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 +P V ++ + +V E+ GR DLR TID +DA+DFDDA+ E R Sbjct: 243 PEFPPEVMKEAESVPSKVTEKQLIGRRDLRKAFTFTIDPDDAKDFDDAISLEYPDDKHVR 302 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 + + IADV+ YVR T LD EA NRG S Y VIPMLP LSNG+CSL DRL Sbjct: 303 VGIHIADVAAYVRGGTKLDTEAFNRGNSTYLVGIVIPMLPRSLSNGICSLVEDEDRLTKS 362 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ-------------------- 394 +T + KG + + V+ S+ RLTY + + +L+ + Sbjct: 363 VFVTFNKKGDIVEVDYANTVIRSNKRLTYKQAYTLLKENDLQAARDLKLPPAHQTGSTGR 422 Query: 395 ----DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 + L K + EL ++ L AR + G ++ + EE K + + +R+E+ Sbjct: 423 ALNTLSDAELGKLQKGIRELWSIASKLRAARFKHGSLNLDMEETKIFVDEKGYADRLEKI 482 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +++H+LIEE M+LAN A+ +++ + P ++R+H+ P E + R +A G+E Sbjct: 483 VNDESHQLIEEYMLLANECVAKEMKRNRLPCIYRVHEDPDEERLNDLREYMATWGIE--T 540 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPI 570 + +D +LLE+++ P + +L+T +LRS+K+A Y GH+GL Y HFTSPI Sbjct: 541 SDLNNRKDLNKLLETLSAHPQSRLLRTQVLRSLKKACYKSTPDGHYGLCKNDYLHFTSPI 600 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RRY DL HR + L + Y+ + + H S E + EA R+ Sbjct: 601 RRYSDLVTHRVFNHFLV--KVRGEPALNESTLRYNASKASSVADHLSQTEVNSVEAERES 658 Query: 631 ADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ 686 +F ++ F +I+ V G F+ L + G+VH+S+L +D YR + Sbjct: 659 IKVKLLEFFERELDKKKKTAFDAIITEVRNHGMFIELKESNAFGMVHISALRDDLYRLNA 718 Query: 687 VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGD 746 G L+G Y LG ++V V V+ +R++DF L ++ P N T Sbjct: 719 SGTALIGRRKKNAYSLGQMIQVEVHKVDRFKRQVDFRLC-DKQDPNNPKPTIMPTEAAEV 777 Query: 747 AGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRA 806 + K Q GK R + K KP K + KPS T TK R+ Sbjct: 778 SPAKPSPSSQNGKTPKRGSKRPARKQGKAKPAGGKA---RKAKPSRATSDKGKPTKPARS 834 Query: 807 A 807 A Sbjct: 835 A 835 >UniRef50_A7HAA8 Ribonuclease R n=6 Tax=cellular organisms RepID=A7HAA8_ANADF Length = 910 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 266/806 (33%), Positives = 384/806 (47%), Gaps = 53/806 (6%) Query: 29 TKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ-------------- 74 KP S EL I E+ ++R LR + R+G L+ ++ Sbjct: 19 RAAGKPLSIRELMQRARIHPGER-TDVKRALRDLTREGVLLRDGKRFSLPGARPAAAPAA 77 Query: 75 ---------CYALPERLDLVKGTVIGHRDGYGFL-RVEGRKDDLYLSSEQMKTCIHGDQV 124 R + V GT+ HRDGYGF+ R++ + DD+++ + + GD V Sbjct: 78 ALAPVGERRGMRRAGRGNEVVGTLKKHRDGYGFVARIDRKGDDVFVPPGEAAQALDGDLV 137 Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 + + A R GR R+V V+ + ++G Y FVVP D L + +P + Sbjct: 138 RVEIVPA-RGGRTAGRLVEVIERRRRLLIGTYHARGARSFVVPADEELGEAVPVP--ETA 194 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A+ G VV V L + G +VE +G + V ++P+ V + Sbjct: 195 AAQDGDVVKVAL---EPGTARLQGAVVEAIGRPGEPRVEVLKVAYAKGFADVFPEPVRAE 251 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG--GGWRLWVAIADV 302 + V E + GR DL LPLVTIDGEDARDFDDAV+ E+ G G +RL VAIADV Sbjct: 252 AEATPDRVRPEDRQGRRDLTALPLVTIDGEDARDFDDAVHVERLEGRKGLYRLVVAIADV 311 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 ++YVRP LD EA RGTSVYFP QV+PMLPE LSNG+CSLNP VDRLCMV ++ V Sbjct: 312 AHYVRPGAALDAEAGRRGTSVYFPMQVLPMLPERLSNGICSLNPDVDRLCMVADLVVDEH 371 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + YE VM S AR TYT+V +++ G + + L + L R Sbjct: 372 GETRSAEVYEGVMRSAARCTYTEVANVVAGQSVPGR--DRFRERFLLMAELQEKLTAMRG 429 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG + F+ EAK + + IE+ RN AH+++EE M+ AN + AR+ + P + Sbjct: 430 RRGALDFDLPEAKIVLGEGGEVVAIEKRPRNRAHRIVEEFMLAANEAVARWFGSRELPTI 489 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIHD P E + +F + G E+P P PR LL L +LLR+ Sbjct: 490 YRIHDVPDEEKLQAFLDLAESHGFEVP--EVPGPRALNALLGRFQGHAQQRALNQLLLRA 547 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M QA+Y EN GH+GLA Q Y HFTSPIRRYPDL +HR +K Sbjct: 548 MMQAVYATENIGHYGLAAQHYLHFTSPIRRYPDLVVHRLLK-------EEWARRQGQPVR 600 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 S + ++ S ER A EA RD+A + FM D+VG ++GVIS+V FG FV Sbjct: 601 EPSPAALAEMAAVSSERERAAMEAERDIAAFYAALFMKDKVGERYEGVISAVVEFGLFVE 660 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L F++GLV + L D L+ ++G+ +R+GD V V V + + R+I+ Sbjct: 661 LKRWFVEGLVRLEDLGGAP-ELDTELHALVDRTTGRAFRVGDEVTVDVVSASPIRRRIEL 719 Query: 723 SLISSERA-PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 L+ +A + K R + + + G + + + RG+ Sbjct: 720 KLVEEAKAIGKPAAKGRRRREAEPVLAEAGPE-----EADARGARAPRRGKPAPASAPPA 774 Query: 782 KDARKAKKPSAKTQKIAAATKAKRAA 807 R ++ ++ + Sbjct: 775 AGRR--QRSGEGHREHGVKQGPRART 798 >UniRef50_C1ZCD0 Ribonuclease R n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCD0_PLALI Length = 808 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 238/809 (29%), Positives = 380/809 (46%), Gaps = 36/809 (4%) Query: 23 FILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 IL +T P +LA E+ + + RR L + +L T +P Sbjct: 7 QILSVVTHPAYTPLKWQQLAKEVGAQKHD-WTKFRRSLEELIEGKRLHRTSGGLIKVPVA 65 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSS-----EQMKTCIHGDQVLAQPLGADR-KG 135 + + GT+ G+ + E + ++ E + + GD+V A L G Sbjct: 66 REHIIGTIKRAARGHAWFTPESLANQPHIEPYTVAAEDAGSALTGDKVSAIILKKRGPNG 125 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 + R++ +L T+Q VG Y G G+V D+SR I + G R G VV+E Sbjct: 126 KIAVRVIDILERATTQFVGEYHESRGKGYVTVDNSRFERPIDVGDPGAKGVRPGDQVVIE 185 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEE 255 + P T +++VLG G+ + + +P +P++V ++ + E+ Sbjct: 186 MVHFPEFSTPGEAVLLKVLGKRGEPGVDLQSIIYEFGLPDEFPESVLEESRLQAQLFSED 245 Query: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 R+DLRD ++TID ARDFDDA+ ++ G W L V IADV+++VRP T LD+E Sbjct: 246 DIGDRLDLRDELIITIDPLTARDFDDAISLKRHEDGSWTLGVHIADVAHFVRPGTELDKE 305 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 A RG SVY P +V+PMLPEVLSN L SL R + S G + F A + Sbjct: 306 AIRRGNSVYLPGKVLPMLPEVLSNALASLQQDKVRFVKSAFIEYSPDGMVKHTSFANAAI 365 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAP--------LVKHLEELHNLYKVLDKAREERGGI 427 R Y +V +L Q E AP + + LE ++ L +L K R RG + Sbjct: 366 KVRRRFAYEQVMPLLLNRQSPGEHPAPEGETVPEEICQLLERMYELAMILRKRRFSRGAL 425 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 E + N + + + + +H++IEE M+ AN++ A ++ L R+HD Sbjct: 426 ELSLGEVELDCNDDGNVTGAHRALHDASHQIIEEFMLAANVAVAEEFDRRGWFFLRRVHD 485 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 P + +F +A LG +LP + + LL VA +P+A L LLRS+KQA Sbjct: 486 SPDELRMQNFAKFVATLGYDLPR--AQDRQAIQALLNEVAGQPEAFPLNYALLRSLKQAE 543 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE--------------QGHQ 593 Y PE GH+ LA+ +YAHFTSPIRRYPDLT+HR +++++A + Sbjct: 544 YSPEKIGHYALAVDNYAHFTSPIRRYPDLTIHRLLEHVIADASFTHSVPAAESLNTASDR 603 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 + + S ++ QLG+ CS+ ERRA++A R++ ++ D+VG I+ Sbjct: 604 KKSKSSRADLLSEADLRQLGKQCSLTERRAEKAERELIKIRLIRYLADKVGLELNATITG 663 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 V FG F + +L +GLVH+S L DYY DQ+ ++G SG+ +RLGD V V+V +V Sbjct: 664 VERFGLFCQGIELPAEGLVHLSDLPGDYYDVDQIAHAVIGRRSGRVFRLGDPVRVQVSSV 723 Query: 714 NMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK 773 + +R+++F ++ + + + GD + + Sbjct: 724 DPAKRELNFRIVGRSGQDDTLSEGEFSRETPGDDRSRSASDKSSSSPRRRSQPRFP---- 779 Query: 774 KTKPKAAKKDARKAKKPSAKTQKIAAATK 802 + A+ K + KK S+ +K + Sbjct: 780 GDRSNASAKGGFRQKKQSSSPKKTRKKPR 808 >UniRef50_C9LMK5 Ribonuclease R n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMK5_9FIRM Length = 679 Score = 630 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 229/662 (34%), Positives = 354/662 (53%), Gaps = 13/662 (1%) Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLG-ADRKGRREARIV 142 +++G + +GFL + +D+Y++ ++ D V + + E ++ Sbjct: 14 VLQGVYKSYGPRFGFLITDEEHEDVYIADRDHLNAVNNDIVEVRIKKGETGRHNTEGEVL 73 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 R++ + V Y + G +P D ++ I IP + + A G V+VE+T+ P Sbjct: 74 RIIERAENTFVCTYEMTSFGGKAIPIDEKIDMVIEIPRGEELEAVTGARVIVEVTRWPGA 133 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD 262 R A GK+ E++G G+ +DI + H +P+++ +A+ + L +E+ +E G D Sbjct: 134 RANAEGKVTELIGYKGDKGIDIDIIIAQHRLPHVFSKALMAEADALSKEMKQE--KGVED 191 Query: 263 LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 R LP+VTIDG DA+D DDAVYC KK G ++L V IADVS YVR + +D EA RGTS Sbjct: 192 FRSLPIVTIDGPDAKDLDDAVYCVKKENGHYQLGVHIADVSRYVRKGSLIDDEAYRRGTS 251 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLT 382 VY +VIPMLP LSN LCSLN DR M C M V+ G++ K +++ R Sbjct: 252 VYLADRVIPMLPFQLSNDLCSLNHDEDRYAMSCIMDVAPDGKVAAEKITPSMVRVARRCN 311 Query: 383 YTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 Y ++ + + P + L L +L K RE RG + F+ E K I + E Sbjct: 312 YPEINQAFETGV-ASDDLKPYLPMLRNLKACADILRKNRENRGALEFDFPEYKVILDEEG 370 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 RIE+ R DA K+IE+ MI AN + ARF+E +++RIHD P + S + ++A Sbjct: 371 TPLRIEKRNRGDAEKMIEDAMIAANETVARFLEATGHTSVYRIHDHPDGNKLLSLKKMMA 430 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 G+ +PEP+D L+ES+ + ++Q M LRS+ QA Y EN+GHFG+A Sbjct: 431 IFGMAEKLPKEPEPKDMQRLMESMKGKESEAVVQVMTLRSLPQACYSTENKGHFGIASTC 490 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPDL +HR I+ L +T E +L+ +HCS E+ Sbjct: 491 YTHFTSPIRRYPDLMVHRLIRQALRNRLNKSQLKKQT-------EFLLRAVEHCSETEQN 543 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A E RD D ++M+ VG F I+ +T FG FV LD+ ++GLVH+ S+D+D Y Sbjct: 544 AVETERDTTDLKMTEYMIPFVGEPFDAHITGLTRFGIFVGLDN-GVEGLVHIDSMDDDEY 602 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 + + + G G+ Y +G V V + + ++R++DF ++ R+P N+ K R+ + Sbjct: 603 VYQEDTMTVKGLRGGKKYTMGMPVRVTLVKADKEKRELDF-IMGEIRSPLNLEKRVRKGS 661 Query: 743 KK 744 + Sbjct: 662 RP 663 >UniRef50_D2R7Z3 Ribonuclease R n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7Z3_9PLAN Length = 955 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 220/706 (31%), Positives = 344/706 (48%), Gaps = 29/706 (4%) Query: 80 ERLDLVKGTVIGHRDGYGFLRVEG------RKDDLYLSSEQMKTCIHGDQVLAQPLGADR 133 + V G G+GF+R R D+++ + +GD V + + R Sbjct: 195 GKDKTVTGKFKRAAAGFGFVRPLDVTSRGDRTQDIFIPQNASQDAANGDIVRVRLVSGGR 254 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 R+ IV +L T Q VG Y + G G V D + I + GA G VV Sbjct: 255 SLRKSGEIVEILERDTHQFVGVYQEQRGSGVVEVDGRVFAVPISVGDPGAKGAAPGDKVV 314 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +E+ + P+ + I EVLG G+ +R +E+P +P+AV E+ Sbjct: 315 IEMVRFPSHTHEGEAVITEVLGARGTPGIDTLSIMREYELPEAFPEAVLAASREEAEKFD 374 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 E R D ++TID DARDFDDA+ K G ++L V IADVS++V+P + LD Sbjct: 375 ES-IGDRRDFTKTTIITIDPVDARDFDDAISLTKLESGNYQLGVHIADVSHFVKPKSVLD 433 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 REAR+R TSVY P +V+PMLPE++SN L SL P R + S +G +FY + Sbjct: 434 REARDRATSVYLPDRVLPMLPEIISNNLASLQPDKVRYAQTAIIEFSPEGTPLHSEFYLS 493 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAP-LVKHLEELHNLYKVLDKAREERGGISFESE 432 + S R TY +V L Q +++ P + + L +H L +L + R ERG I Sbjct: 494 AIKSCRRFTYEEVDDYLADRQAWKKKLKPQVHELLGVMHELAMILRRRRLERGAIELSLP 553 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E K + + + ++ ++H++IEE M+ AN + AR + + + P L RIH+ P Sbjct: 554 ETKIDLDKKGEVSGAHLSKNTESHQIIEEFMLAANEAVARHLNEKELPFLRRIHENPDLR 613 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + ELG+E + + +++ VA P+ + +LR+M++AIY P Sbjct: 614 KLQVLTKFVRELGIECD--SLESRFEIKRVIKEVAGAPEEHAVNYAVLRAMQKAIYSPAV 671 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 GH+ L + Y HFTSPIRRYPDLT+HR ++ L+ ++ ++ L Sbjct: 672 EGHYALHSEHYCHFTSPIRRYPDLTIHRMLRSLIHGKKPAADFASQVL-----------L 720 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLV 672 +HCS E+RA A RD+ ++ +VG+ VI+ V FG FV DL +GL+ Sbjct: 721 AEHCSEREQRAQAAERDLIKVKLLGYLSKRVGSEMDAVITGVEEFGIFVMGIDLPAEGLI 780 Query: 673 HVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA-- 730 H+ SL++DYY+FD L G +G +RLGD + V V V++D R++DF + ++ Sbjct: 781 HIQSLEDDYYKFDSDTHSLTGRRAGNRFRLGDVLRVSVAKVDVDRRELDFRFVGRLKSDR 840 Query: 731 ------PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFR 770 PR+ + ++ + RR G + F R Sbjct: 841 THLSRLPRSGVRMRQDVPDEMQNDADFPPRRDEGSRPEFPDRGPPR 886 >UniRef50_B6W7V2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W7V2_9FIRM Length = 700 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 213/710 (30%), Positives = 392/710 (55%), Gaps = 18/710 (2%) Query: 21 REFILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA-L 78 ++ IL + KP + E+ L + + + + + + +D ++ + ++ L Sbjct: 4 KDLILNIVNDENYKPMTIKEMLKYLDCDKYIKKDVKKII-KKLAKDNEIKISSKKKIHPL 62 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR- 136 + G + + GYGF + + D+++S+ + T + D+V + + G+ Sbjct: 63 STEDKSLIGQINLAQGGYGFFISDNKDFKDVFISANNLNTANNLDRVRIKIIKNKEFGKN 122 Query: 137 REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 E ++V ++ +++IVG Y G GFV+ D + ++ DI + A+ V+VE+ Sbjct: 123 AEGKVVEIIERNSNKIVGLYQKNKGFGFVISDSNNITSDIYVDEKNSKKAKSNDKVLVEI 182 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 P + GK++EVLG+ + + +++H + + + V+++ ++++V Sbjct: 183 INYPKK-GSPEGKVIEVLGNKDEANVDLISIVKSHGLKENFSKKVKKEAVFIEKDVDLSK 241 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 R DLRDL VTIDG D++DFDDA+ EK + L+V IADVS+YV+ + +D+EA Sbjct: 242 VKNREDLRDLFTVTIDGRDSKDFDDAISIEK-DNEDYILYVHIADVSHYVKEKSEIDKEA 300 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG S Y + V+PMLPE LSNG+CSLNP +RL + +M ++ KG++ YK Y+A++ Sbjct: 301 YQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKMKINDKGKVIDYKIYKALIR 360 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S+ RL Y V L ++ + + L++ L+ ++LYK+L K RE+RG I F E++ Sbjct: 361 SNYRLVYDDVNDYLDYNKKVYDD-EVLLEKLDLFNDLYKILKKKREKRGSIDFNFTESQI 419 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + + + I +R A+K+IEE M+++N + A P+++RIH+KP E + S Sbjct: 420 DVSNQGDVLNISLFERGSANKMIEEFMLVSNETIASLFAFMDFPSIYRIHEKPKEEKVES 479 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 F+++L LG + G + P+D+ ++L+ + + D ++ ++LR+M++A Y HF Sbjct: 480 FKNILNTLGYNIK-GKELHPKDFQDILKQIKGKDDESLINMLMLRTMRKAKYTNYRDMHF 538 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFT+PIRRYPDL +HR +K + + E+ +++ + +H Sbjct: 539 GLATKYYTHFTAPIRRYPDLIVHRLVKDFIDNK-------LESINQTSLEKKLSKFAEHL 591 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S+ ER +++ RDV D KC +M +G F+G+ISS+T FG FV L++ ++G + Sbjct: 592 SITERNSEDCERDVEDLYKCKYMKKFIGERFEGIISSITDFGIFVELENT-VEG-CFMYK 649 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 + ++ + + + + Y++G +V + V+ V++D+R IDF L+ Sbjct: 650 FSDSHFEYIEDKLSCINIDKNKRYKIGQKVMIEVKNVDLDKRNIDFDLME 699 >UniRef50_Q6ALZ0 Related to ribonuclease R n=1 Tax=Desulfotalea psychrophila RepID=Q6ALZ0_DESPS Length = 721 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 237/723 (32%), Positives = 358/723 (49%), Gaps = 27/723 (3%) Query: 11 AEKYANPIPSRE-FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 + K + S+E IL + + P ++ + + E L+ L + + + Sbjct: 17 SPKKTQKLNSQEGEILYQIYASQAPLRAKQIFAKC---KKYSYEQLQNSLHTLVQKKIIH 73 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLR-----VEGRKD--DLYLSSEQMKTCIHGD 122 + Y + + + + G+GFL +E + D Y+S M +HGD Sbjct: 74 LVGGKTYVVSNKELFCTAILDANPRGFGFLHNMESNIEAQLPLQDPYVSQYNMSQALHGD 133 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +VLA + GR EA I V+ ++I G + G VVP+D RL F + + + Sbjct: 134 KVLAYIFRTTQNGRSEAEIFHVIKRGLNRIAGVIAIDGSKGIVVPEDKRLPFVVQVTIPE 193 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 M R G V+V L Q T G ++E G + + +P + Sbjct: 194 DMSVRHGDGVIVTLKQTATPDKVRQGMLLESFGSPDSVKSQIRFVVEKSVLPDKFSGETY 253 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ + E+ RVDLRD+ VTIDG+ A+DFDDAV EK+ G +RL+VAIADV Sbjct: 254 AELEQMG---GEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEKR-GVNFRLYVAIADV 309 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 S++V+ + LDR+A RGTSVYFP VIPMLPE LSN LCSL P DRL + + + Sbjct: 310 SHFVKVGSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDEDRLTLTAILDIDRA 369 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G+L F +++ S R TYT+V IL + + L+E L ++L + R Sbjct: 370 GKLQKKSFCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRA 429 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPAL 482 RG + F E+ + ++E +E + +++ + + K+IEE M+ AN + A F + AL Sbjct: 430 IRGALGFTMPESIILLDSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSAL 489 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +RIH+KP + + F + LG++LP + P + ++E ++ +LLRS Sbjct: 490 YRIHEKPDVDRVKEFATYAHNLGMQLPPPDN-SPAWFGRVIEESKGSEKEFVVNNLLLRS 548 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 MKQA Y +N GHFGLA Y HFTSPIRRYPDL +HR + L+ N + Sbjct: 549 MKQAKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHRELCRLVGYLPAETKNRSA---- 604 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 Q G S ER A +A R++ D LKC FM +G FK +IS VT GFFV Sbjct: 605 -------QQAGDFLSGRERVATKAERELGDRLKCIFMERYIGETFKAIISGVTDTGFFVE 657 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L D I + L D Y FD G L+G++ G + LGD VEV V+ ++ ++ Sbjct: 658 LKDFPISASAPIEELVEDMYLFDYRGHNLIGQNKGAFFSLGDSVEVTVQRIDRARNRVIV 717 Query: 723 SLI 725 + + Sbjct: 718 APV 720 >UniRef50_D0J9E8 Ribonuclease R n=2 Tax=Blattabacterium RepID=D0J9E8_BLASP Length = 649 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 186/666 (27%), Positives = 332/666 (49%), Gaps = 25/666 (3%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 + + + +A L G + GY F+ ++G D+++ ++ I GD V + Sbjct: 3 LEKKIKKFAGLSNNSLAIGFINITSYGYAFVNIKGFPKDIFIPKKKTNRAIEGDLVQVRF 62 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 + E ++++L K +G ++ G V+ ++ + DILIP ++ G + Sbjct: 63 KNRKSGKKIEGEVIKILKRKRKNFIGILKMKSQYGLVIVHNNTIHVDILIPINEFKGYQH 122 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 V+VE+ + P +GKI++ G + + L + I Y +P+ VE++ + Sbjct: 123 NEKVLVEIVKWPKNSKNPLGKIIKGFGVSGEYKTEIFSLLSEYGISYEFPKEVEKEAKEI 182 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 + R D+R++ TID DA+D DDA+ K W + + IADVS+YV+ Sbjct: 183 VLK-KNSDLNMRRDMRNINTFTIDPLDAKDIDDALSIRKLNSNTWEIGIHIADVSHYVKE 241 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 + LD+EA R S+YF +VIPMLP++LSN LCSL+P+ D+L ++++G++ Sbjct: 242 GSFLDKEAYTRANSIYFVGKVIPMLPKILSNDLCSLHPEKDKLSFSSIFNMNNQGKILKS 301 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 F + ++ S+ R TY +V I++ + + + L K+L K R + G IS Sbjct: 302 WFGKTIIRSNRRFTYEEVQKIIERKKG------DYHEDISTLLFFSKILTKNRLKNGAIS 355 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA------KEPAL 482 E E KF + + R+ + N+AH+LIEE M+LAN + F + Sbjct: 356 IEKVEIKFHLDKKNNPTRLYLEKSNEAHRLIEEFMLLANRKISEFFSLNLDGKPSNRTYI 415 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 +R+HD+P + I + ++ LG L N LL+S+ + + M++ ++LR+ Sbjct: 416 YRVHDEPDFQKIFVLKKIIEPLGYFLDLKNIKT--SINHLLKSIQGKSEQNMIENLILRT 473 Query: 543 MKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 M +A Y +N GH+GL+ Y HFTSPIRRY D+ HR + Y L K+ Sbjct: 474 MSKAKYSTKNIGHYGLSFIYYTHFTSPIRRYSDIIAHRLLNYYLTKKNNKLK-------- 525 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 S+E + +HCS ER A +A R+ +L+ ++ +G F+G+I+ T + ++ Sbjct: 526 --SIEFYEEQSKHCSEKERLAIDAEREFLKYLQVKYIKKYLGKEFEGIITGFTEWSVYID 583 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDF 722 L +G++ + + D+Y ++G + Y LGDR++V++ N+++++I Sbjct: 584 LLVFQTEGMIRLRDIQEDFYTLHSNNYSIIGRKKRRVYYLGDRIKVKLIDANIEKKQITL 643 Query: 723 SLISSE 728 I E Sbjct: 644 GWIKKE 649 >UniRef50_Q1MQS9 Exoribonuclease R n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQS9_LAWIP Length = 813 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 241/788 (30%), Positives = 384/788 (48%), Gaps = 49/788 (6%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 IL L + P S +E+ L I ++ + L L +++ GQ+V T+ + +A+ + Sbjct: 48 ILSLLYNSDHPLSSNEIITRLKITK-QKKQALELVLNVLQKQGQIVCTKGEKWAIASPMQ 106 Query: 84 LVKGTVIGHRDGYGFLRVEGRKD-----DLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 V GT + R G F+ V+ + D+++ E GD+V E Sbjct: 107 KVIGTFVVQRSGAAFVIVDQQNTQKPYSDIFIRPELQNGAWDGDKVQVIVYPTKHGKNFE 166 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVV--PDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 ++V++L +++ R + G VV P DS+L+ ++ ++ + ++V + Sbjct: 167 GQVVQILERPRKEVIVRVSQKHEKGGVVCYPVDSKLNVLFIVDTSKLPEKPIENELLVII 226 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ---VAGL----- 248 T +G LG + + + IP +P V ++ L Sbjct: 227 PTPNTNGELLMGIAQYSLGVEEDVRVQEKVVKLNYNIPCEFPLHVLKEENVAKDLFIKSK 286 Query: 249 ----------KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVA 298 +++ + + A R DLR + VTIDGEDA+DFDDA+ G W LWVA Sbjct: 287 AVFYNVPYQKYDDISQCSTAIRQDLRVIDFVTIDGEDAKDFDDAICVYPTDIG-WDLWVA 345 Query: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358 IADVS++VR + LD EA RG S YFP V MLPE LSN CSL P+ +RL M +++ Sbjct: 346 IADVSHFVRAGSLLDSEALARGNSYYFPCSVESMLPEFLSNDFCSLKPKEERLVMATKIS 405 Query: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR-EQYAPLVKHLEELHNLYKVL 417 + G+ F+ V+SS ARLTY +V L+ + R + L L KVL Sbjct: 406 FDNDGKTKNVIFFPGVISSRARLTYEQVHLALEVKEISRLPGGIDTLSMLNNASELAKVL 465 Query: 418 DKAREERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 R +RG + F+ E +F+ N A RR+ + + +R +H+LIEE M+ N + A F+ Sbjct: 466 QANRIKRGSLEFDLPETRFLINKATRRVIGVIRQERFFSHQLIEELMLAVNEAVATFLHD 525 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 + P L+RIH +P E + +LA L P+ + +LE + P ++ Sbjct: 526 KQIPFLYRIHPEPDIERLEKLFRILATTDLACQLSGSPDAKKLGGILEEAENTPQTFLIS 585 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M+LRSM QA Y PE HFGLA Y HFTSPIRRY DL +HRA+K+ L Q H Sbjct: 586 RMVLRSMMQAKYSPEPGEHFGLASPLYCHFTSPIRRYADLLVHRAVKFALGDTQKHIPFG 645 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 ++ + + C+ ER A EA R++ L C + G +F+ +++ +T Sbjct: 646 Q----------QLFSIAEQCNSHERVAQEAEREITKRLSCLVLQGDEGKIFEAIVTGITD 695 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 F FFV L + I+G+V ++SL +D++ ++Q Q L+G +G+ + LG R+ V+V +VN+ Sbjct: 696 FAFFVELISMPIEGMVRLASLKDDWFEYNQDRQELLGVRTGKRFYLGQRLTVKVSSVNIL 755 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTK 776 +I+F L + T+ E KKG + R+ K+ +S+FR KK Sbjct: 756 RLEIEFEL-------HMMQPTSGENIKKGRTKARNYYRQ---KEKVRSSNSSFRKRKKKS 805 Query: 777 PKAAKKDA 784 +K Sbjct: 806 SSLHQKGQ 813 >UniRef50_C8P1M4 Ribonuclease R n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1M4_ERYRH Length = 729 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 213/760 (28%), Positives = 365/760 (48%), Gaps = 35/760 (4%) Query: 13 KYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 KY N E + L ++ + + + + L M ++V Sbjct: 3 KYKN----YEAVKTQLESLKEKVLLSAFIESVVESKKINVGEIDEVLEEMSLSKEIVIDG 58 Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD 132 Y + + + G+ R+ + F E D Y+ + + D VL + + Sbjct: 59 EDLYYI-DNVKYGIGSFRVVRETFAFA--ETISDSFYIGKDDFNGALDMDDVLFEIKSNE 115 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 ++ +++ + I+G + F +P D++++F + + + Sbjct: 116 KR---FGVVIKSVKRNRDVILGTMKKDGKKLFFIPYDNKITFKVEYDASNL-DLKENDRC 171 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 + +T R I+ VLG GM V L + I + Q V ++ + E+ Sbjct: 172 IGRITSVGERIH---VDIISVLGQADEPGMDVLSVLFVYGIDNDFKQEVLDEIKNVPTEI 228 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + R+D RD ++TIDGEDA+D DDA+Y E GG+RL+V IADV +YV+P T L Sbjct: 229 DQNETKHRMDHRDQYVITIDGEDAKDLDDAIYMEAL-NGGYRLYVHIADVGHYVQPQTAL 287 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D+ A R +SVY +V+PMLP+ LSNG+CSL+P VDRL M C++ +S G + Y YE Sbjct: 288 DQSAYERSSSVYMVDRVVPMLPKELSNGICSLHPNVDRLTMTCQIDISYAGEVIDYNIYE 347 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 +V+ S R++Y +V + + + + + + L R + G I F+S Sbjct: 348 SVICSKRRMSYKEVN--------TSPDLGEVQEMVSMMLDCARRLQYKRNQAGQIGFDSA 399 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 E++F+ + E + I +R +A ++IE M++AN A+ P L+R+H+ P E Sbjct: 400 ESQFVIDHEGNVLDIFLRERGEAEEMIESFMVIANEVVAQHCRYQSIPVLYRVHEAPDRE 459 Query: 493 AITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPE 551 + L LG L G + P++ + L+ +P+ ++ ++LRSM +A Y E Sbjct: 460 KMQELSHTLRILGYRLKGNLEEIRPKEIQKALKFFEGKPEYPVVSRLMLRSMTKAKYSQE 519 Query: 552 NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQ 611 GHFGLAL+ Y HFTSPIRRYPDL LH+ IK + + ++ Sbjct: 520 PLGHFGLALEDYTHFTSPIRRYPDLLLHQRIKQY--------AVKHDFSKLEKDEQFTIE 571 Query: 612 LGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGL 671 G H S ER +A R V K FM +++G + G IS ++ FG FV L + ++GL Sbjct: 572 AGLHVSKKERSILDAERQVEKIKKAQFMSNKIGEEYVGFISGISNFGIFVELPNT-VEGL 630 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAP 731 +HV +L++D+Y FD Q+++GE +G+TY +G +++V++ +V+ E ++F +I ++ Sbjct: 631 IHVRNLNDDFYTFDGPSQKMIGERTGRTYSIGQKLKVKLVSVDDLEHVVNFEIIGQKKMS 690 Query: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRG 771 R + ++ K + R +K D + Sbjct: 691 RRKPDSRKDGFKSK--DRPSESRNTDKRKGRRINDRRRKK 728 >UniRef50_B0MMH0 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMH0_9FIRM Length = 713 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 219/720 (30%), Positives = 362/720 (50%), Gaps = 18/720 (2%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 I+ L + + ++A + + + L+ L+ ++M R + + Y + + Sbjct: 7 IIATLFENGGGMTLKQIANKNELPKK-YLDKLKNTAKSMIRQRTIFKAKSDLYYISDIRT 65 Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQ-PLGADRKGRREARIV 142 + G V +GF+ +D ++S ++K + GD V+A+ + A ++ Sbjct: 66 VFTGKVATLSRTFGFVTNLATGEDCFVSGGKLKGAVPGDTVIAREIAAKTEQRSATAEVL 125 Query: 143 RVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTR 202 VL G E + V PD ++ + + G V+ + +R Sbjct: 126 AVLDVSEELFGGVIVKEGKMLKVQPDSLGCPPLTILKVKE--QIKEGDKVLFSIRKRGEH 183 Query: 203 RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG-LKEEVPEEAKAGRV 261 ++ + IV VLG + A + L + IP + + Q + + E+ A R+ Sbjct: 184 HSEHIVDIVRVLGSSEYAKSATEAYLIQNNIPVDFSEEALNQAKQYVNAVIDEKQTAKRL 243 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLRDLP+ TIDG D +D DDA+ E+ GG ++L V IADVS+YV +PLD +A RGT Sbjct: 244 DLRDLPIFTIDGADTKDIDDAISIERTEGG-YKLGVHIADVSHYVTEGSPLDNDAFERGT 302 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 SVY +VIPMLP+ LSNG+CSLNP VDRL C M +S KG + YKF + V+ S + Sbjct: 303 SVYIADKVIPMLPKELSNGICSLNPGVDRLAFSCLMEISDKGTVKKYKFAKTVIRSRVQG 362 Query: 382 TYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN 439 Y++V IL G + ++ +Y ++ + ++ L ++L K R++RG +S E+K I + Sbjct: 363 VYSEVNSILDGTANAQIKRKYKDVIDCIPVMNELAQILIKKRKDRGAPDIKSSESKVICD 422 Query: 440 AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 I+ + + +IEE M++AN SAA+ K + P ++R+H+ P E I S ++ Sbjct: 423 ENGICIDIKPRIQGVSEGIIEEFMLMANNSAAKVGMKKEIPFVYRVHENPPAEKIESLKT 482 Query: 500 VLAELGLE-LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 L LG+ L K E +++A+LLE AD P ++ ++LR+M +A Y + GHFGL Sbjct: 483 TLEALGVNPLGINEKAEAKNFAKLLEETADDPKNIIINRIVLRTMAKAKYSEQPIGHFGL 542 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 ++ YAHFTSPIRRY DL++HR + ++++ + ++ + Sbjct: 543 VMKEYAHFTSPIRRYADLSIHRILTDYVSRKGADKLKKKYGEFS-------VKAAAQATK 595 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 E A A R D+ ++M +G F G+IS V G G FV L + ++G + V SL Sbjct: 596 TELSAVAAERSCEDFYAAEYMKKHIGEEFDGIISGVIGSGLFVELPNT-VEGKIDVRSLS 654 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTA 738 +Y+ G L +G Y +GD+V V+ N++ +IDF LI + N K Sbjct: 655 ENYFEVR-NGIALYDGVAGTMYTIGDKVRVKCINANVNLGQIDFELIKVYKDASNGDKAE 713 >UniRef50_A8I2E1 3'-5' exoribonuclease n=98 Tax=Alphaproteobacteria RepID=A8I2E1_AZOC5 Length = 814 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 255/787 (32%), Positives = 390/787 (49%), Gaps = 41/787 (5%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 + A K +P +E +L + + S+ ++A + G Q L+ LR ++ +G Sbjct: 45 DAPAFKATGVLPGKEEVLAFIASQGGKVSKRDIARAFGL-GSGQKIELKALLRDLKDEGA 103 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDD---------LYLS-SEQMKT 117 + R+ +P L V + RDG G L + D + L ++++ Sbjct: 104 VE-GGRRRMHVPGSLPSVVLVDVTGRDGDGELLAVPTEWDSEEHGDAPVILLHVPDKLRG 162 Query: 118 CIHG--DQVLAQPLGADR--KGRREARIVRVLVPKTSQIVGRYFT----EAGVGFVVPDD 169 G D+++ + D R+++VL Q +G + +G G ++P D Sbjct: 163 PAPGLSDRIVVRVEPNDPAPGIGYTGRVIKVLEKARKQQLGVFRKAPPGSSGGGRIIPID 222 Query: 170 SR-LSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIAL 228 + L ++ +PP GA G +V VE+ + ++ E LG +A+ Sbjct: 223 KKNLGRELQVPPGAENGAEDGDLVSVEMM-HQRVFGQPTARVKERLGSLATEKAISLVAI 281 Query: 229 RTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKK 288 H IP +P V + + GR D R LPLVTID DA+D DDAV+ Sbjct: 282 HAHGIPNAFPAKVIAEAEAAR----PATAKGREDWRKLPLVTIDPPDAKDHDDAVHAVPD 337 Query: 289 RG----GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344 GG+ + VAIADV+ YVRP + LDREA RG SVYFP +V+PMLPE +SN LCSL Sbjct: 338 DDPDNAGGFIVTVAIADVAAYVRPGSALDREALLRGNSVYFPDRVVPMLPERISNDLCSL 397 Query: 345 NPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLV 404 PQ DR + M + GR + F+ +M S A+L Y + + G D + APL+ Sbjct: 398 RPQEDRAALAVRMVIGKDGRKRSHSFHRILMRSAAKLAYEQAQAAIDGVSD--DTTAPLL 455 Query: 405 KH-LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 + L L+ Y + +AR+ R + + E K + + ++R+ R DAH+LIEE M Sbjct: 456 ESVLRPLYAAYACVKQARDARQPLELDLPERKILLKEDGTVDRVIVPPRLDAHRLIEEFM 515 Query: 464 ILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 ILAN++AA +E+ K P +FR+HD P+ +++ R LA L + LP ++ P + +L Sbjct: 516 ILANVAAAETLEQKKVPLIFRVHDGPTLAKLSALREFLATLDISLPKTDQVRPSHFNRIL 575 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 V A ++ ++LRS QA Y EN GHFGL L+ YAHFTSPIRRY DL +HR + Sbjct: 576 GMVDGGDSAPLVNQVILRSQSQAEYSSENYGHFGLNLRRYAHFTSPIRRYADLVVHRGLL 635 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 L + T ++E + ++ S ERRA A R+ D L + +Q+ Sbjct: 636 RTLGADADALPETA-------TVETLAEISADISATERRAMAAERETVDRLIAHHLAEQI 688 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G VF+G I+ T G FV LD+ DG V +SL DYYRFD+ Q L+G+ +G+ +R+G Sbjct: 689 GAVFQGRITGATRAGLFVALDETGADGFVPAASLGQDYYRFDETRQALVGDRTGEMHRIG 748 Query: 704 DRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNF 763 DRVEV++ + F L+S E + GK+A+ + + A K R K+ Sbjct: 749 DRVEVKLVEAAPVAGALRFELLS-EGSYLGRGKSAKGRGAERPASKAAKARAGFAKRTAG 807 Query: 764 EPDSAFR 770 R Sbjct: 808 RAPRKGR 814 >UniRef50_Q6MCC7 Putative ribonuclease R n=2 Tax=Parachlamydiaceae RepID=Q6MCC7_PARUW Length = 775 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 208/785 (26%), Positives = 360/785 (45%), Gaps = 39/785 (4%) Query: 6 FQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 +E + + N + E + K P S + L L + + E + L +++ Sbjct: 20 RSAKEEKLFNNLLKITEQFMR--GKSFMPLSLEVLMQRLALP-PQHKEIFQEVLNKLQQQ 76 Query: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFL---RVEGRKDDLYLSSEQMKTCIHGD 122 G + + + D+V G + H G+GF+ + + D+++ K + GD Sbjct: 77 GLIESKEEKYEWKKSQADVVTGILKMHPRGFGFVQVTIPKNFEQDIFIPKHLTKNGVDGD 136 Query: 123 QVLAQPLGAD-RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL--SFDILIP 179 V E +IV +L + + G + L +++ Sbjct: 137 VVEVILNQEVISDKGPEGKIVAILSRGRTHMAGIIRQLDKDRMFIAHVPLLGTQQRVVVH 196 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 P + ++G +V+E+ ++ T+ + + LG V A+ E+ + Sbjct: 197 PTEEHQLQIGDRIVMEVIDWGSKETETICRFSHYLGHISDPSCDVYAAIEEFELRSDFQT 256 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 A ++ L + V ++ R DLR+L +TID + A+DFDDA+ + G + L V I Sbjct: 257 AAIEEANNLGKSVSKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHI 316 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 ADVS+YV+P T LD EA+ R S YFP +PMLP LS LCSL P V+RL + M + Sbjct: 317 ADVSHYVQPGTALDEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRI 376 Query: 360 SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDK 419 S G L Y+F +V+ S R TY + +L G ++ +P HLE + L ++L + Sbjct: 377 DSSGNLLDYRFTRSVIKSAKRFTYKEAKKVLDG-----QKNSPYKPHLELMVELCRLLKQ 431 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 R ERG I F E + + + + E + H+++EE M+ AN A + + + Sbjct: 432 KRYERGSIEFSLPELVILVDEKGKPYSTEYITYDITHQMVEEFMLKANEIVAWDLSQKGK 491 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 +RIHD+PS E + F ++ A G +LP + P P+D +L E A+ + L + Sbjct: 492 NLTYRIHDEPSEENLRDFSTLAAAFGFKLP--DLPTPQDLQKLFEKAAETAYSNYLASSY 549 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 +R M+ A Y EN GH+GL+L Y HFTSPIRRY DL +HR L E Sbjct: 550 IRRMRLAAYSAENIGHYGLSLTHYCHFTSPIRRYVDLVVHRI----LFGESDR------- 598 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ----VGNVFKGVISSVT 655 +++ ++ +CS ER + +A V K + ++ + ++ +I+ V Sbjct: 599 ------FDDLQEIANYCSEQERISAKAENSVVILKKLRLLEERHQKAPEHEYQAIITRVK 652 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG + + DL ++G +H+S L DY+ +++ L G G Y GD + V +E ++ Sbjct: 653 NFGIYFEIFDLLLEGFIHISDLGEDYFVYEEEKMLLRGAKHGARYSPGDNLVVMLEKIDF 712 Query: 716 DERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKT 775 ++ + ++ S P+ AR+++ + K K+ GK + +A + Sbjct: 713 ISQETKWYVLPSVSTPKKS--IARKRSASKEYQKHLNKKCSTGKYNLKKKQAASMTKLGK 770 Query: 776 KPKAA 780 K + Sbjct: 771 KKRKR 775 >UniRef50_C7LXJ9 Ribonuclease R n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXJ9_DESBD Length = 701 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 230/708 (32%), Positives = 356/708 (50%), Gaps = 23/708 (3%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 S++ +L L + P + + ++ L M G++V + Y L Sbjct: 13 SKKNLLAALHQSGAPLRSKNIFDLFD-ADASLKKVIKSTLAQMVESGEIVQMGKS-YGLI 70 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 + L + GT+ R G G+L + RK DL++ GD+V+A + +K E Sbjct: 71 DNLPRMTGTLDVRRSGVGYLIADDRKQKDLFIHPNNFGGAWPGDKVVAVVDSSRKKDSPE 130 Query: 139 ARIVRVLVPKTSQIVGRY--FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVEL 196 R+V VL T +++ R F P DSR+ F ++ + G ++ V Sbjct: 131 GRVVEVLDRATRELLVRVSRRIHQDSYFCHPTDSRMPFYTVVDTSDVPNPEKGDILSVAP 190 Query: 197 TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA 256 + + + LG+ + + IP ++P +Q L + + Sbjct: 191 VE-EQEKGIWRCTALRRLGEERDLATQELLVKTGYSIPEVFPVPALRQAEALPDTPSPQD 249 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 A R DLR L LVTIDGE A+DFDDAVY E++ G +RL VAIADV++YV +PLD EA Sbjct: 250 WAERNDLRKLALVTIDGETAKDFDDAVYVERQENG-YRLVVAIADVAHYVPEGSPLDVEA 308 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 RG S YFP V PM PE LSNGLCSL P+V RL MV + S G + Y AV+ Sbjct: 309 LARGNSYYFPLSVEPMFPEALSNGLCSLRPKVARLAMVVDTPYSMDGEPGAPRLYNAVIM 368 Query: 377 SHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF 436 S ARLTY +V L G D + A L+ L + L K+ K R +RG + F+ EA+ Sbjct: 369 SQARLTYNQVQAALDGTPD--QDTAELLPMLRDAEELAKIFMKRRMDRGCLDFDIPEAQV 426 Query: 437 IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 + I + R +H+LIEE MI AN A ++ + +RIH +P + + + Sbjct: 427 RVIED--IISVHAGTRLFSHRLIEEFMIAANERVAEYMGARQRVFPYRIHPQPDEKKLET 484 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 +L+ L + + + ++ ++LR+M QA Y PEN GH+ Sbjct: 485 LLRMLSHTSLVDRLPKEMNQMGLQHISHAAKGTDIEYLVNRLILRTMMQAQYSPENDGHY 544 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA +Y HFTSPIRRY DL +HR++K L+A E SM ++ + + Sbjct: 545 GLASVAYCHFTSPIRRYADLLVHRSLKRLIAGEPEK-----------MSMGDVQGICEGL 593 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + ER+A EA R++ + D++G +GV+S V FGF+V L D+ +DGLV +++ Sbjct: 594 NALERKAMEAEREIQKRSAILALEDRIGEEMRGVVSGVADFGFWVELLDMPVDGLVRLAT 653 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 L +D+Y FD Q L+G+ +G+T+ +G + V +EAV+++ +I+F+L Sbjct: 654 L-DDFYVFDPERQDLLGQRTGKTFAMGQTLNVVLEAVSLERVEINFTL 700 >UniRef50_Q1D4N8 Ribonuclease R n=2 Tax=Cystobacterineae RepID=Q1D4N8_MYXXD Length = 1182 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 241/758 (31%), Positives = 370/758 (48%), Gaps = 40/758 (5%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDD-LYLSSEQMKTCIHGDQVLAQPLG 130 RR ++ E L++G + HRDG+GF+ + D ++L + + + D+V+ Sbjct: 156 RRGRFSEVEEDGLLEGILHVHRDGFGFVHPLSGEGDNVFLPPHEAQRALDNDRVVVAV-- 213 Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 + R R E RIVRV+ + VG Y + V P DS L I +P Q+ AR G Sbjct: 214 SGRPPRLEGRIVRVVQRRRELAVGTYVVKGRYAVVYPTDSSLPGPIRVPLTQM--AREGD 271 Query: 191 VVVVEL---TQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG 247 +V V+L Q G++ LG V + +P V + Sbjct: 272 LVKVQLGIGAQMLDPDRGLHGEVAGSLGKPGTPSAEVLGVAYSQGFSDEFPPEVMAEADR 331 Query: 248 LKEEVPEEAK--AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYY 305 V EE R DLR +PL+TIDGEDARDFDDAV E + G WRL VAIADV++Y Sbjct: 332 YAVTVTEEEVRGEHRRDLRAIPLITIDGEDARDFDDAVCVEDRADG-WRLVVAIADVTHY 390 Query: 306 VRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL 365 V + L+ EA R TSVY P +V+PMLPE LSNG+CSL P DRLCMV +MT +G Sbjct: 391 VWEGSALNAEALRRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRRGHR 450 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERG 425 Y Y AVM S AR TY +V +L G H E L +L + L K R+ERG Sbjct: 451 RSYDLYPAVMRSVARCTYNEVQDVLDGK--DVPHRNAHKPHFERLMSLARALMKMRKERG 508 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRI 485 I F+ E K + + + R+++ +R D+H+LIEECM+ AN + A F + P ++R Sbjct: 509 AIDFDLPEHKVVLDEDGLPARMDKRERKDSHRLIEECMLAANEAVATFFQNEGLPTVYRF 568 Query: 486 HDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 H +P E + +F ++ G ++ + ++ + + P+ L +LLRSM Q Sbjct: 569 HGEPDPEKLATFAALAEAYGFKMRVEDGVSSKELDAFVSQLQGHPEQRALNQLLLRSMMQ 628 Query: 546 AIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 A+Y GH+GLA + Y HFTSPIRRYPDL +HR +K A +G Sbjct: 629 AVYTSSRVGHYGLAAEHYLHFTSPIRRYPDLLVHRLLKAHWA----RKGRKPSQSMLERE 684 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 +++ + CS ER A + R+V + C M D+VG F ++++T FGFFV LD+ Sbjct: 685 EDQLEDMAAQCSERERAAMQVEREVVSFYACLLMKDRVGEEFAATVAAITDFGFFVELDE 744 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + ++GLV +L + D++ L+ ++G+ R+G ++ VR+ +VN+ +KIDF + Sbjct: 745 VHVEGLVKAETLG-PGAKLDKLTHSLV-YANGRRVRVGQKLRVRLTSVNVTAKKIDFEAL 802 Query: 726 SSERAPR-------------------NVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD 766 + ++ AG+ G + R+ P Sbjct: 803 QFDGEAPLSRVATRGEQPQRRQAWTAEAPSHRERDGRRERAGRPGRREREAAAASRGAPS 862 Query: 767 SAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAK 804 + +P+ + +R+ ++ + + + Sbjct: 863 GQYEETGPGRPR--GRFSREGRREESAPHRKEPRFPPR 898 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 S++ + + L + + P EL + Q L+R LR + R G ++ ++ Sbjct: 4 SQDLLKQILAEADHPLGIKELLRLAGLH-PGQQTELKRALRELVRQGDILKDGKR 57 >UniRef50_UPI0001C3771C hypothetical protein RflaF_02780 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3771C Length = 721 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 223/713 (31%), Positives = 361/713 (50%), Gaps = 16/713 (2%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + I+ LT +K + + ++ E + +G ++ + AL Sbjct: 22 KNKIVTFLTAYDKKSMPLSMLESKCRTKKQGRENFTEAFSQLRTEGVIMMKKGMKVALCS 81 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 R +V T+ +GF + + ++ + M + D+VL + A R G E Sbjct: 82 RAGVVPATITRLSRTFGFAETDEGIE-YFIPGKCMLGAMPNDRVLLADI-ASRTGEPEGE 139 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +V +L ++Q+ GR G ++VP D+ ++I + + G V+ E+ R Sbjct: 140 VVDILEFGSNQLTGRIEFVDGEPYLVP-DTAAKNHMIISVRESIPFENGDKVLAEIVYRG 198 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-VPEEAKAG 259 R + KI+ V G + L H P +P V+++ + E V + + Sbjct: 199 RRHAEHKVKIILVFGSSEYAASCASSILMIHGAPTDFPDDVKKEAVKISEGGVQDYSFNN 258 Query: 260 RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNR 319 R DLRD+P+ TID +++D DDAV E+ + G +RL V IADVS+YV+ ++ LD+EA R Sbjct: 259 REDLRDMPIFTIDSAESKDLDDAVSVERTKNG-YRLGVHIADVSHYVKGNSELDKEAMRR 317 Query: 320 GTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHA 379 GTS+Y+ +VIPMLP+ LSNG+CSLNP +RL + + + S+G + Y+F ++V+ S Sbjct: 318 GTSIYYADKVIPMLPKELSNGICSLNPDENRLTLSAFIDLDSEGNMLSYRFCKSVIRSRV 377 Query: 380 RLTYTKVWHILQGDQ--DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 + Y+++ IL G++ ++RE+YA + L + L L +E R E+ E+K I Sbjct: 378 KGVYSEINKILAGEESAEIREKYASVRDVLAVMDELADKLIAKKERRHAPEIETTESKLI 437 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + + +R + ++IEE M+ AN +AA+ + + P ++RIH+ P + + Sbjct: 438 IDENGICCGVLPRERGKSERIIEEFMLTANEAAAKLAREKEIPFVYRIHEAPPEAKVENL 497 Query: 498 RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 +L + GLE P + +P AE+L S E + M+LRSM +A Y E GHFG Sbjct: 498 HELLPKFGLECPHFTEFKPHHAAEILRSAKGTDKFEAVNLMVLRSMAKAKYSTEPVGHFG 557 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 L L+ YAHFTSPIRRYPDL +HR I +LA + +G + + S Sbjct: 558 LVLEDYAHFTSPIRRYPDLAIHRIITDILAGYDNKWLSKRYSGFA-------VNAAERSS 610 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 AE RA R+ D K ++M +G F+ ISSVT FGF+ L + ++GL+H+ +L Sbjct: 611 AAEIRAVTIERECEDCYKAEYMKAHIGETFRARISSVTEFGFYAELPNT-VEGLIHIRTL 669 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 Y + + L + +G TY LG V+V AVN+ E IDF L E Sbjct: 670 PEGEYDYSEP-VSLTEKFTGTTYSLGMEVDVICSAVNVSEGTIDFVLDDDEED 721 >UniRef50_A7VVJ8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVJ8_9CLOT Length = 699 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 212/713 (29%), Positives = 344/713 (48%), Gaps = 20/713 (2%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 I +E I E L A EL L + ++Q ++ +E++G LV T++ Sbjct: 3 ITIKEKITEALENYRDAAEPLELFRALGLNDKDQFAA---AVQELEQEGVLVATKKGRLL 59 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRR 137 + L +I G+ F R +D+Y++ E K + GD VL + + KG Sbjct: 60 SVKSAGLTPAQMISQSKGFSFARPLEGGEDIYVAQEDRKRAMLGDTVLLRDIRDSGKG-L 118 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 R+ +++ G + D + + + + + G V + Sbjct: 119 SGRVEKIIRKGNRLFTGTVVRRGRDLELE-LDGAFRYQVPVEKKGSLHGKNGDKVQA-IL 176 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLK-EEVPEEA 256 R K +I++V G + D + + IP + + ++ L E + Sbjct: 177 SYGPRSGKLTARILKVYGKAASAKVCADAIIDANGIPKKFKKETLREAEKLSREPITPAE 236 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 + R DLR+ + TIDG DA+D DDA+ EK G W+L V IADVS+YV+ + +D EA Sbjct: 237 RKKRADLREQLIFTIDGADAKDLDDAISVEKDGAG-WKLGVHIADVSHYVKEGSLVDEEA 295 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 + RGTSVYF +VIPMLPE LSNG CSLN ++L C MT+ KG L GY+F ++V+ Sbjct: 296 KQRGTSVYFADRVIPMLPEALSNGCCSLNAGEEKLAFSCFMTLDRKGNLRGYRFQKSVIC 355 Query: 377 SHARLTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 S R Y +V +L+G + L+E+Y P++ L+ L ++L+ RG + FES EA Sbjct: 356 SKVRGVYDEVNQVLEGCAAERLKEKYQPVLASLQAGQELAQLLEAKGRRRGTMDFESSEA 415 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 +F + I + + K+IE+ MILAN +AA + + + P ++R+H+ P E + Sbjct: 416 RFFLDRNGTCVDILPRSQGLSEKMIEQFMILANQAAALYAKCLEIPFVYRVHEDPDPERL 475 Query: 495 TSFRSVLAELGLELPGGNKP-EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 + + + A LGL + D ++LL P ++ +LR++ +A YD + Sbjct: 476 NTLQQLAAGLGLRARRIQEGVRSADLSDLLRQAEGTPAQNIINHQVLRTLAKARYDNKPL 535 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGL L Y HFTSPIRRYPD +HR + + +G + + +S E Sbjct: 536 GHFGLNLDDYCHFTSPIRRYPDTAIHRILTGV---AEGITVDRLQKKYQDFSREA----A 588 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 S E RA A R ++M +G F G++S T G FV+L + ++G V Sbjct: 589 VLSSACELRAQRAERQAEKCYMAEYMRRHLGETFDGIVSGATARGIFVQLVNS-VEGFVG 647 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 V + ++FD + SG+ +GD ++V+V A ++ +IDF+ Sbjct: 648 VEDFPDCEFQFDGL-LTHTDVRSGRRLTVGDPMKVQVAAADVATGRIDFTPAE 699 >UniRef50_A6CFY5 Ribonuclease R n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CFY5_9PLAN Length = 758 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 215/751 (28%), Positives = 352/751 (46%), Gaps = 26/751 (3%) Query: 21 REFILEHLTKREK-PASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + IL+++ + P L ++ E + + + +++ + Sbjct: 5 EKKILDYVNRTGYTPVREKALLKKVGGSKSSSPE-FEQAMANLRSRKEILISDSGLIRPV 63 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDDL----------YLSSEQMKTCIHGDQVLA-QP 128 ++ + GT+ G G+L + DD+ Y+S + GD+V A Sbjct: 64 KKEGWIAGTIKKTNSGAGYLIPHHKPDDIAHDQRHAGDLYISERDLGDAQTGDEVYATAI 123 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 G+ R+V ++ ++ VG YF G G+V D + I + G R Sbjct: 124 NRQRSGGQICGRVVEIIERASTTFVGTYFETQGEGYVHVDGKIFNSPIHVGDPGAKGVRS 183 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 VV+++ P++ G I +VLG + G+ + + IP +P+ V + Sbjct: 184 EDKVVIDILHFPSKNYLGQGVIAKVLGPHGKAGVDLLSIIYEFGIPLDFPEEVLAEAREQ 243 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 E R DL +VTID DARDFDDA+ + G W L V IADV+++V+ Sbjct: 244 ASLFDETKLGNRRDLTRETIVTIDPADARDFDDAISLTRDEKGHWLLGVHIADVAHFVKE 303 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 + LDREA++RGTSVY P +VIPMLPE++SNGL SL R + + +G Sbjct: 304 GSLLDREAKHRGTSVYLPGRVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTPEGIPVHT 363 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQ-YAPLVKHLEELHNLYKVLDKAREERGGI 427 +F + R Y +V I+Q D + A + + L+ ++ L +L R G + Sbjct: 364 EFANTAIKVKQRFAYEQVLPIVQERDDEGKHVSAEVRELLKNMYQLAMMLRGRRFSAGAL 423 Query: 428 SFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHD 487 E K F+ + R+ + + +++H++IEE M+ ANIS A L R+H Sbjct: 424 ELHLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLAANISIAEAFHDRGLRFLRRVHP 483 Query: 488 KPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 P +F LG L +D +L+ V P + + LLRS+KQA Sbjct: 484 SPEMPRQLAFAEFANALGFTL--NKVQSRKDLQKLINEVHGTPVEQAINYALLRSLKQAE 541 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y + GH+ LA+ Y HFTSPIRRYPDLT+HR I +L + +G S + Sbjct: 542 YTDKELGHYALAVDHYCHFTSPIRRYPDLTIHRMIDEILERPDKGKG---------QSPQ 592 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + QLG S+ ERRA+ A R++ +M+D + +I+ V FG F R D+ Sbjct: 593 GLRQLGHELSLRERRAESAERELTKVKLLTWMIDNNIRTLETMITGVETFGMFCRGTDVP 652 Query: 668 IDGLVHVSSL-DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++GL+H+S L +DY+ + ++GE +GQ YR+GD + V VE +++D R++DF L Sbjct: 653 VEGLLHISRLGKHDYFHQEVPKFSIVGERTGQEYRVGDLLTVEVEKIDLDRRELDFRLPR 712 Query: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 ++ + K + K+ AG K+++ Sbjct: 713 PKQYGKTKKKGSGAPEKRAPAGAAKSKKKES 743 >UniRef50_C7H5E0 Ribonuclease R n=3 Tax=Ruminococcaceae RepID=C7H5E0_9FIRM Length = 705 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 216/707 (30%), Positives = 348/707 (49%), Gaps = 21/707 (2%) Query: 31 REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER---LDLVKG 87 + +P +L + + + + L + D +V + + + Sbjct: 12 QNQPCMVKDLKAKFGGDRAADRKVM-EALDELVHD-AVVCQKSGVFFTARSGRAEKALPC 69 Query: 88 TVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADR-KGRREARIVRVLV 146 V+ + F+ +E D+++ + + GD VL + R +G E I+ VL Sbjct: 70 KVVKLGKNFAFVMLEDESGDIFIPGRFTRGAMPGDSVLVEKFAHPRVEGSDEGEILAVLE 129 Query: 147 PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 K +VG G VPDD + I D GA+ G V VE+ QR TR+ Sbjct: 130 QKND-MVGTVRRIEGRLKFVPDDCPAIS-MTIQRDCEGGAKDGDKVAVEILQRGTRQEDH 187 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKE-EVPEEAKAGRVDLRD 265 + G L +I +P+ V + ++ V EE GR+DLR Sbjct: 188 RVGVSMRFGSCEEAKRCAKALLYAKDIHTRFPEKVRDEAKKFEDMTVSEEDCKGRMDLRA 247 Query: 266 LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYF 325 LP+ TID + +D DDAV + GGG+ L V IADVS+YV+P + L+ EA NR TSVY+ Sbjct: 248 LPIFTIDSAETKDIDDAVSLTRLPGGGYELGVHIADVSHYVKPGSELNEEAFNRATSVYY 307 Query: 326 PSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTK 385 QV+PMLP+ LSNG+CSLN + RL C M + G LT YKF ++++ S + Y++ Sbjct: 308 ADQVVPMLPKSLSNGICSLNEKELRLAFSCLMRLDQDGNLTDYKFVKSIICSRVKGVYSE 367 Query: 386 VWHILQGDQDLRE--QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR 443 + +L G D +YA ++ L + LY + R+ERG I FES E K I + Sbjct: 368 INALLAGTADAETQAKYAEVLDQLPAMKELYAHRARLRKERGCIDFESGEVKLILDENGH 427 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 +++ ++ +IEE M+LAN AA F + P ++R+H++P+ E + S+L Sbjct: 428 CIDVKKRTSGESEAMIEEFMLLANQCAAHFARVKQIPFVYRVHEEPNGEKLERLHSLLQA 487 Query: 504 LGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQS 562 G+ + P P++ + +LE V P +++ T +LR M +A Y+ + +GH+GL L+ Sbjct: 488 CGINDHFAKEVPTPKELSAILEGVRGTPFEQIVNTGMLRCMSKACYEEKPKGHYGLVLKD 547 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 YAHFTSPIRRYPDL +HR + LL+ T + + + + S E Sbjct: 548 YAHFTSPIRRYPDLAIHRMMTDLLSG-------TDKETMIVRYTDFAEKASKQSSEREVL 600 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY 682 A + R D+ K ++ +G ++G+IS VT G FV L++ ++G V SSL Sbjct: 601 AVQIERKAEDYYKAEYARRHLGECYEGIISGVTQRGIFVELEN-GVEGFVPASSLTATGT 659 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 + G RL +SG+T+ LGD + + + +++ K+DF + + Sbjct: 660 TLTE-GIRLSDPASGKTWSLGDSMMITIVRADINLGKVDFEVAPETK 705 >UniRef50_B6WY09 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WY09_9DELT Length = 803 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 243/727 (33%), Positives = 361/727 (49%), Gaps = 40/727 (5%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 +LE ++ +P D L + + L +L A+ +GQLV + +A + L Sbjct: 18 ELLEIFHEQNRPLRLDALLRVTGLPRAARK-MLEDQLYALADEGQLVRLQGGLWARADGL 76 Query: 83 DLVKGTVIGHRDGYG-FLRVEGR-----KDDLYLSSEQMKTCIHGDQVLAQPLGAD--RK 134 ++G + R G G F+ G D+++ Q H D V R Sbjct: 77 RQIRGRYMALRSGAGGFVTPLGDNGQVTGPDIFIHPLQAGDAWHQDMVRVALSPRSHARG 136 Query: 135 GRREARIVRVLVPKTSQI-VGRYFTEAGVGFVVPDDSRLSFDILIP-PDQIMGARMGFVV 192 +E RIV VL ++ V P DSR+ FD+ + P+ + G ++ Sbjct: 137 KSQEGRIVEVLERGCREVPVHVIHVTGRRALCRPADSRMPFDVSVELPEDMERPSGGSLL 196 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 +V +R ++++ +G + D+ HE+P +P V+ + L Sbjct: 197 LVAPEKR-LAADLWQARLLQSVGREDDIAVQEDLVKLNHEVPREFPPRVQAEADALPSAP 255 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 AGR D+R LPLVTIDG DARDFDDAV E + GGGW L VAIADVS+YVRP + L Sbjct: 256 RHADMAGREDVRALPLVTIDGADARDFDDAVQVEARPGGGWLLRVAIADVSHYVRPRSAL 315 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D EA RG S YFP+ V PMLP L +GLCSL P DRL M+ E+ S+ G+ +F Sbjct: 316 DTEALARGNSWYFPTSVEPMLPPALCDGLCSLRPDEDRLAMLAEIPFSATGQPGKPRFAA 375 Query: 373 AVMSSHARLTYTKVWHILQGDQD-------LREQYAPLVKHLEELHNLYKVLDKAREERG 425 VM S ARLTY +V L + + ++ LE LY+ L +AR+ RG Sbjct: 376 VVMRSAARLTYDQVKACLLDRDEQARAALAAGPRGQEVLDMLETAFELYRCLREARQRRG 435 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA-------- 477 + F+ E ++ F+ + R+ R+ + R+DAH+LIEE MI AN + AR + Sbjct: 436 SLDFDLPEPEYSFDDKGRLLRVSRRVRHDAHRLIEEFMIAANEAVARHLGGLKADGSPEG 495 Query: 478 --KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 KEP L+R+H +P E + S L + EL KP +L V ++ Sbjct: 496 APKEPFLYRVHPQPDPERLESLFDSLEAIDPEL-VPVKPAASALQGILRDVQGSDREFLV 554 Query: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 + LR+M QA Y PEN GHFGLA ++Y HFTSPIRRY DL +HRA+K L G Sbjct: 555 GRLCLRAMPQARYQPENEGHFGLASRAYCHFTSPIRRYADLLVHRALKASLGLYDGALPA 614 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 + +L++ + ER A + R++A L C + +VG F+GV++ V Sbjct: 615 GQK----------LLRVADQLNRRERDALDCEREMARRLACMALEGRVGERFRGVVAGVN 664 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 FG FV L+++ ++G++ V L +D+Y FD Q L+G+ SG + +G +EV + V+ Sbjct: 665 DFGLFVELNEMPVEGMIRVEDLGDDWYDFDVRRQCLVGQRSGLCWSMGQSLEVVLAEVHS 724 Query: 716 DERKIDF 722 +I Sbjct: 725 GRLEIRL 731 >UniRef50_Q28VI9 Ribonuclease R n=25 Tax=Rhodobacterales RepID=Q28VI9_JANSC Length = 778 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 250/790 (31%), Positives = 377/790 (47%), Gaps = 33/790 (4%) Query: 5 PFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMER 64 P + +N IPS+E IL+ +T S+ ++A I+G +++ L+R LR ++ Sbjct: 4 PHLRATSPPMSN-IPSKEQILQWITDNPGKRSKRDIAKAFGIKGAARID-LKRILRELQE 61 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGH---RDGYGFLRVEGRKDD------LYLSSEQM 115 +G L R Y P++L V + +G F R + LY Sbjct: 62 EGHLEKVGR-TYRDPDKLPPVT-ILSVQAPDDNGDLFARPLEWHGEGVEPRVLYTPRTAD 119 Query: 116 KTCIHGDQVLAQPLGAD----RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR 171 GD++LA+ + + A+++R + +I+G + A G + P Sbjct: 120 PAVGQGDRILAKLFAVEGSDAEDHQYTAKLIRKIGTNPRKILGIFRKGAEGGVITPISKG 179 Query: 172 LSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTH 231 + + GA+ G +V EL R +I +GD IA+ H Sbjct: 180 SDKEWQVRAGDTHGAKDGELVEGELAGPKARMGAPRARITTRVGDPGAARAVSLIAIHEH 239 Query: 232 EIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG- 290 IP +P V + + GR DLRDLPL+TID DARD DDA Y Sbjct: 240 GIPDSFPNKVVAEA----DAAKPAGLTGREDLRDLPLITIDPADARDHDDACYAHADEDP 295 Query: 291 ---GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQ 347 GG +WVAIADV++YV P + LDREAR RG S YFP +V+PMLP+ LS LCSL+ Sbjct: 296 GNKGGHVIWVAIADVAHYVTPDSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEG 355 Query: 348 VDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK-H 406 V R + M + ++G G+ F+ +M+S A L+Y + + L E+ APL++ Sbjct: 356 VPRAVIAVRMVIDARGEKIGHTFHRGLMTSVASLSYEEAQAA--QEGTLSERTAPLIEGS 413 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 + L Y L AR +R + + E + + + + R DAH+LIEE M+LA Sbjct: 414 IRPLFAAYDALKIARAKRQPLELDLPERRIELDDAGNVTSVAFKDRLDAHRLIEEFMVLA 473 Query: 467 NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV 526 N++AA + + P LFR+H++PS E + + R V A GL L G + R LL Sbjct: 474 NVAAAETLIAKRTPLLFRVHEEPSPEKLEALREVAASAGLTLAKGQVLQTRHLNALL-KA 532 Query: 527 ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 A +E++ LRSM+QA Y+PEN GHFGLAL+SYAHFTSPIRRY DL +HRA+ Sbjct: 533 AGEDTSELISISTLRSMQQAYYNPENFGHFGLALKSYAHFTSPIRRYADLIVHRALIAAH 592 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 + + G +E + + S ERR+ A RD +D ++ D+VG Sbjct: 593 GWGPDAKID----GLSPDEIERLEDTAKLISGTERRSMVAERDTSDRYLAAYLSDRVGAE 648 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 F G IS + FG FV+LD+ DGL+ + +L +Y+ FD Q LMG +G +GDRV Sbjct: 649 FGGRISGIARFGVFVKLDETGADGLLPMRALGQEYFHFDAEAQTLMGADTGTMISIGDRV 708 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD 766 V++ + L+ + + G + G K RR+V + Sbjct: 709 LVKLAEAVPVTGGLILELLEHDGKAPSRGSGRGARKGGGRGRGKPPARRKVSASKARKTK 768 Query: 767 SAFRGEKKTK 776 + ++ Sbjct: 769 LRKKQDRSRP 778 >UniRef50_Q0EWH9 Exoribonuclease II n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWH9_9PROT Length = 707 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 226/650 (34%), Positives = 334/650 (51%), Gaps = 23/650 (3%) Query: 85 VKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRV 144 G V H DG+GF+ VEGR+ +L E+M +HGD V + ++GR A +VR+ Sbjct: 74 YTGKVSAHPDGFGFVDVEGREKGFFLPHEEMNGLMHGDIVEVR--PVRKRGRESAEVVRI 131 Query: 145 LVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + ++ +VG+Y + + V P + ILI A G V +E+ + Sbjct: 132 VEHASTVLVGQYLVQGKIAVVQPRSRNMPQAILIAHGDAGTASDGDWVRIEIKR---DAG 188 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 GK+ EVLGDN+ +D+ + ++ +P AV + ++V E GR DLR Sbjct: 189 HVRGKVQEVLGDNLSPSRLIDLIVAEQQLDVDFPPAVIAEANAFADQVLESDIKGRKDLR 248 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 +P VTIDGEDARDFDDAV + G + WV+IADVS+YVRP + LD+EA R S Y Sbjct: 249 HIPFVTIDGEDARDFDDAVCVLPRGEG-FEAWVSIADVSHYVRPHSALDKEALARSNSFY 307 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +VIPMLPE LSNGLCSLNP + RL M M + G YE+V+ S ARLTYT Sbjct: 308 FPDRVIPMLPEKLSNGLCSLNPHLPRLGMTVRMRFDANGTRRSIHVYESVIHSQARLTYT 367 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 + L+ + + L + L++ L++ L+K R++RG + + E + + + + Sbjct: 368 QASAWLEERDETAVEKPELREMLDDAARLFRKLEKKRKQRGALDLDMPEVRALLQDD-VV 426 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 I ++RN A +LIEE M+ AN + A +++ + L+RIH P +AI + LA Sbjct: 427 VDIVASERNIAQRLIEEMMLAANTAVAEYMDAHECALLYRIHPAPERQAIETLNEFLAPF 486 Query: 505 GLELP------GGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 GL + ++ P D +LE +P A +L ++LRSM+QA Y P N GHFGL Sbjct: 487 GLFVKLPKIKEKDSQVRPGDVQLVLEQSEGKPFAHVLHRLVLRSMQQAKYTPVNVGHFGL 546 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A SYAHFTSPIRRY DL +HR +K L+ E ++ T + +G S Sbjct: 547 AYDSYAHFTSPIRRYADLIVHRRLKALIRGEDPNRVQPVGT---------LADIGLQTST 597 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER+ D L F VG IS +T F ++ + + V L Sbjct: 598 QERKQQRGEWDTQAMLAALFHSKDVGKTMPARISGLTKRRIFFEIEPTMAEAGLAVDDLP 657 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSE 728 + D+ G RL G Y LGDR++V +++ + +I+ L + Sbjct: 658 G-AFELDETGHRLAARRGGSAYHLGDRLDVVIDSTDPVRGQINVRLAGEQ 706 >UniRef50_B4WQK5 VacB and RNase II family 3'-5' exoribonucleases n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQK5_9SYNE Length = 779 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 211/764 (27%), Positives = 364/764 (47%), Gaps = 57/764 (7%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 +L +L+ +K + L +L+ EE + L L A+ER L +R Y E D Sbjct: 8 LLANLSD-DKLVAVKTLEKKLNCNTEEAVRDLHIALTALERTNVLEKSR-GKYRKIENED 65 Query: 84 LVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 +++G + G+ F + DD+Y+ Q+ T +GD+VL Q + R E + Sbjct: 66 VIEGKLRCSSKGFCFAIQDEEGADDIYVRESQLNTAWNGDRVLVQVTKDGSRRRSPEGEV 125 Query: 142 VRVLVPKTSQIVGRY---FTEAGVGFVVPDDSRLSFDILI-PPDQIMGARMGFVVVVELT 197 +L ++ + T A +P D RL F++ I ++ + + ++ VE+T Sbjct: 126 KLILERANESVLAKVKAAETAADKFKAIPLDDRLLFELDIAESEEDLSEAIDHLIHVEIT 185 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 + P + GK+ +LG + VDI H++P I+ + V GL V + Sbjct: 186 RYPIAQHPPQGKVSRILGSDAEDAADVDIVYCKHDLPRIFSEEVFIAARGLPNRVRKSDI 245 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GRVDL + +TIDG +A+ DDA+ + G RL + ++DV++YV+P+ +DR AR Sbjct: 246 KGRVDLTEHAALTIDGSNAKVIDDAISLDITDDGYRRLGIHVSDVAHYVQPNDVIDRTAR 305 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 +RG +VY +++PMLP + N LC+L P DRL + +T+ G++ Y+ +V+ Sbjct: 306 SRGMAVYLGDEIVPMLPPPIPNALCALVPDKDRLAISILITMDDDGQVLEYEIQPSVIQV 365 Query: 378 HARLTYTKVWHILQGDQDLR-----------EQYAPLVKHLEELHNLYKVLDKAREERGG 426 +LTY + IL ++D E++ P++ ++ L+ L + + + R ERG Sbjct: 366 SHQLTYDQAQAILVREEDEELEKLGFSPDDIEEFEPVMDLIDSLYQLSQEVKQRRHERGS 425 Query: 427 ISFESEE---------------AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 + KF ++ E + + A ++ E M+LAN A Sbjct: 426 FELNLPQHEFPPEAEELAEYLSPKFQYDDEGSFGAMVVSDHMPARIIVTEFMLLANQLVA 485 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN--KPEPRDYAELLESVADR 529 R +++ P L+R+H P + + + ++L + + P DY E Sbjct: 486 RHIKELGIPGLYRVHRTPELADVQELVKLANNMEIDLQLEDVEQVAPSDYRNFTEQFKAS 545 Query: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIKYLLAK 588 ++L +LL ++K A+Y HFGLA+ +Y HF SP+RRYPDL +HR + + Sbjct: 546 KSEKVLTYLLLATLKPALYSARPGPHFGLAIDDAYTHFASPVRRYPDLLVHRLLHAVFKH 605 Query: 589 EQGHQGNTTE----------TGGYHYS----------MEEMLQLGQHCSMAERRADEATR 628 + + ++ G ++S E++ + + ER +A Sbjct: 606 GRDRRSTRSKDRVNLRHSSCHGKINWSVLPPAVQQEMEEQLTRAPIKLTERERITQDAES 665 Query: 629 DVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVG 688 D+ K FM G VF G+I+ V +GFFV L++L ++GLVHVSSL +D+Y + Sbjct: 666 DLEGLKKAAFMQAHTGEVFHGLITGVQSYGFFVELEELLVEGLVHVSSLKDDWYEYRSRQ 725 Query: 689 QRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR 732 Q+L+G + Q YRLGD VEV V++V+ ++ID + Sbjct: 726 QKLVGRKNRQQYRLGDHVEVEVKSVDYYRQQIDLVAVGGGSEAS 769 >UniRef50_Q8EW72 3'-5' exoribonuclease RNase R n=1 Tax=Mycoplasma penetrans RepID=Q8EW72_MYCPE Length = 727 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 190/727 (26%), Positives = 337/727 (46%), Gaps = 32/727 (4%) Query: 19 PSREFILEHLTKR-EKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 P IL L + KP + L +L+ + + + + + Sbjct: 11 PLESKILNILKDQNGKPIPINILFKKLNY---GNRSAVYSAIDYLTDNFFIEKLNNGKLI 67 Query: 78 LPERLDLV------KGTVIGHRDGYGFLRVEGRKDDL-YLSSEQMKTCIHGDQVLAQPL- 129 L + GT+I + F +++ K+ Y++ + + + ++ D V + Sbjct: 68 LGYTNGKILDGQTFVGTIIINGKADAFFKIKDEKESFAYINKKNLNSALNNDTVEICLMD 127 Query: 130 GADRKGRREARIVRVLVPKTSQIVGRY-------FTEAGVGFVVPDDSRLSFDILIPPDQ 182 ++A + +++ G Y + G+ +VPDD +++ I + D Sbjct: 128 KNTYPDLQDAVVTKIIERDRDFFTGTYYLKPTRNKFKKGIELIVPDDKKINLKIEL--DD 185 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 G V+ ++ + + ++LG G + + + I + + + Sbjct: 186 SSDLVNGNKVLFKIAR--ISDGVIYCSVSKILGHIDDVGNDIISIVYDNNIDPEFDEETK 243 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 ++ + + +E A R DL + VTID ++D DDAV K + G ++L+VAIADV Sbjct: 244 EETSKIDFGFSQEEDAKRKDLSHINFVTIDPATSKDMDDAVCVVKNKDGTYKLYVAIADV 303 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 SYYV+ + L R A RGTS+Y +QVIPMLP LSN +CSLNP R VCEM + Sbjct: 304 SYYVKLHSNLWRSALKRGTSIYLVNQVIPMLPHKLSNNICSLNPFEKRYAQVCEMDIDKN 363 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G T + Y A++ S + Y V ++ + + E + + L L L+K RE Sbjct: 364 GEFTNIQVYPAIIFSKYKFAYDNVNDYIKLKKKIEEVPDEIYEMLNTSFELDDYLNKKRE 423 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA--KEP 480 + G I+F+ +EAK I + +I+ + + A K+IE M+ AN + + P Sbjct: 424 KDGYINFDIKEAKIILDENEKIKDVVIRETGPAQKMIENFMVAANEAVTLKFHQLCPNLP 483 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTML 539 ++R+H KP + I F+ ++G +P ++ LE + P+ +++ +L Sbjct: 484 FVYRVHAKPEEKRINDFKIEADKIGFIYDRNLTSWKPNTVSKWLEKNKNNPNKDLINMIL 543 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LR+M +A Y N GHFGL++ +Y HFTSPIRR D+ +H ++ + ++ Sbjct: 544 LRTMAKAKYQTANLGHFGLSISNYTHFTSPIRRLADVIVHYLLRMFV-----YEPENYSE 598 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 Y + + + E A E RDV ++M +++G + G +S +T FG Sbjct: 599 QEKDYILCNLDDFCLKANSCEVLAVETERDVNAMKFAEYMKEKIGCEYNGFVSYITNFGV 658 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FV+L++ I+GLV + +DYY F+Q +G + + LG +V++RV N + +K Sbjct: 659 FVQLENT-IEGLVKPMFIKDDYYVFNQKDLTYVGRNKNRVISLGQKVKIRVVDANKETKK 717 Query: 720 IDFSLIS 726 IDF +I Sbjct: 718 IDFEIIG 724 >UniRef50_C8W8A8 VacB and RNase II family 3'-5' exoribonuclease n=2 Tax=Atopobium RepID=C8W8A8_ATOPD Length = 670 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 223/683 (32%), Positives = 342/683 (50%), Gaps = 31/683 (4%) Query: 62 MERDGQLVFTRRQCYALPERLD--LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCI 119 M R RRQ A + L+ GT+ R G + L+ + + Sbjct: 1 MARKRIHKGNRRQGRAKVSKRPSTLLTGTLSLSRPGVATVSTPEGM--YALAKHGIHEAM 58 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 HGD+V + A + A + VL T +G Y +G VVP DSR+ D + Sbjct: 59 HGDEVQVSLVSA-KGKAPLANVRFVLTRATQTFLGIYHDAGPLGAVVPLDSRIQRDFFVL 117 Query: 180 PDQ----IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 P+ G VVV +T+ PTR++ AV I +G M V+ + ++ + Sbjct: 118 PEDPSVGRHYVFEGDVVVARITEYPTRKSAAVVTIERRVGSAEDLDMNVEATIASYGLAT 177 Query: 236 IWPQAVEQQVAGLKEEVPEE--AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 +P +Q + + + A R DLR+ +T+D DA+DFDDAV K G + Sbjct: 178 EFPIKALRQAEKISVDADKALAEDASRHDLREELCITVDPADAKDFDDAVGARKLEDGSF 237 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 LWV IADV++YV+ +P+D EAR R S Y +V+PMLPE L N +CSL P DRL M Sbjct: 238 ELWVHIADVAHYVKWDSPIDLEARMRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAM 297 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL------REQYAPLVKHL 407 +M +SS G++ G +V+ S ARL+Y +V LQGD RE + + + Sbjct: 298 SVKMKLSSSGKILGATAMNSVIRSRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMI 357 Query: 408 EELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILAN 467 + L+ + + ++ RE+RG + FES E + + + + + +R A LIEE M+ AN Sbjct: 358 DVLNQIRALREEIREKRGSVDFESVETRVVLDENNKPVGVSVRERTQATGLIEEAMLAAN 417 Query: 468 ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELG-LELPGGNKPEPRD---YAELL 523 S A + + + +R+H++PS E++ + L +G LE ++ D E L Sbjct: 418 ESVAHMLSQHDLESAYRVHEQPSPESLKLAITPLVAMGALEPDVASRIAIGDQTALQEAL 477 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 ESV + ++ LLR+ K+AIY P N+GHF L +Y HFTSPIRRYPD+ +HR +K Sbjct: 478 ESVHGTRYSRVVNAQLLRAQKRAIYLPTNQGHFALGADAYCHFTSPIRRYPDVIVHRTLK 537 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 LL + + + + CS ER+AD A R ++ ++ Sbjct: 538 RLLCGQTAARAEL----------SALADICSTCSEQERKADAAARATQKIKLAEYYQSRL 587 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G G I FG F+ LDD + DGL+ V L +++Y +DQ L+GES+G+TYR+G Sbjct: 588 GEETWGTIDGCERFGLFITLDDTYADGLLTVRDLGHEWYVYDQETLALIGESTGKTYRIG 647 Query: 704 DRVEVRVEAVNMDERKIDFSLIS 726 RV V++ VN+ +ID +L+ Sbjct: 648 GRVRVKISGVNVARGQIDLALVE 670 >UniRef50_Q2RPE7 RNAse R n=19 Tax=Alphaproteobacteria RepID=Q2RPE7_RHORT Length = 842 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 273/813 (33%), Positives = 392/813 (48%), Gaps = 46/813 (5%) Query: 17 PIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCY 76 P PSRE +LE + R E+A HI G E+ LR L+ +E +G L R + Sbjct: 55 PFPSREQVLEFIRAANGEVDRREIARAFHITGPER-ADLRTLLKELESEGALQRGRGRRI 113 Query: 77 ALPERLDLVKGTVIGHRD--GYGFLRVEGRKDD-----LYL--SSEQMKT------CIHG 121 A P L V ++ D G F + E +D + L + G Sbjct: 114 APPGSLPEVAVLIVARADAEGDLFCKPEHWPEDEEPPRILLWPEPHHARRPGVGAEIGVG 173 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++LA+ R +AR +R L S+++G + P + R + L+ P+ Sbjct: 174 DRILARLTRIG-DARYDARTIRRLAAAPSRLLGVLALARDGLRLRPTNRRDRDEYLVAPE 232 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 GA G +V EL R K++E LG G + + +H+IP +P Sbjct: 233 DAGGAEPGELVEAELLP-SRRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFPPE- 290 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLWV 297 E GR DLR +PLVTIDGEDARDFDDAV+ E GGWR V Sbjct: 291 ---ALAEAEAAVGVDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALV 347 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADV++YVR LD+ AR RG SVYFP +V+PMLPE LSNG CSL P DR C+ M Sbjct: 348 AIADVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDRGCLAVWM 407 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKV 416 ++G ++F +M S ARLTYT+V D + APL + + L+ +++ Sbjct: 408 IFDAEGNKLRHRFLRGLMRSAARLTYTQVQAA--RDGHADDLTAPLQERVIAPLYGVFQA 465 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L AR RG + + E K + + + RIE R D+HKLIEE MI AN+SAA +E+ Sbjct: 466 LLGARSRRGTLELDLPERKVVLDDGGEVARIEPRLRFDSHKLIEELMIAANVSAAETLEE 525 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 + P ++R+HD+P+ + + + L L + G+ + +L++ P M+ Sbjct: 526 KRRPCMYRVHDQPAPDKLVALGEFLESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVN 585 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 ++LRS QA Y P+N GHFGLAL+ YAHFTSPIRRY DL +HRA+ L Sbjct: 586 EVVLRSQAQAEYSPDNIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDD----- 640 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 G + E+ ++ H + ERRA +A RD + F+ +VG F G I+ VT Sbjct: 641 ---GLRPGAEEDFVETAAHITATERRAAQAERDAVNRYTVSFLAAKVGATFAGRINGVTR 697 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 G FV L+D DGL+ + SL NDYY D L G+ G + LG VEV + N Sbjct: 698 AGLFVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDGLEFHLGAPVEVLLREANPV 757 Query: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRR-QVGKKVNFEPDSAFRGEKKT 775 + F L+ G A +G +GK G+ + + + + Sbjct: 758 SGGLVFGLL--------QGGVAGAAKGRGFSGKTKGRDGLGKTRLKERGAAAKLKKGARG 809 Query: 776 KPKAAKKDARKAKKPSAKTQKIAAATKAKRAAK 808 KPKAA +DA + + +K T ++R + Sbjct: 810 KPKAAGRDALAGEPVGSGPKKRPPTTTSRRKTR 842 >UniRef50_B7CDH3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM Length = 688 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 216/710 (30%), Positives = 362/710 (50%), Gaps = 26/710 (3%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 +E I+++L ++ K +L + + ++ + + L +E + +L++ L + Sbjct: 2 KEKIIQYLEEK-KECKIRDLEKIVRPKSSKEFTEMVKSLNELEDE-KLIYNDHTSLYLID 59 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 + + G+ + V + +Y+ + D+VL + + E Sbjct: 60 DIHFMAGSAKDISR--YEIAVFNENNKVYVPKNKKMKIFDKDEVLVRL-------KPEPS 110 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 +++V + I G + F D L I + ++ + VV ++ + Sbjct: 111 LIKVFNHGLTNITGVMIVKKKKTFFY-SDLDLHCSIRVVNEKEFSFKKRTKVVCQIVKYA 169 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 +I++VLG G+ + L ++++ ++ + ++ + +V ++ R Sbjct: 170 ---DPLEVRIIQVLGHPDDAGVDISAMLTSNQVRQVFNGKIVKECKRIPAKVQKDELENR 226 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 D+R L VTIDG+DA+DFDDA+ K G + L+V IADVS+YV+ ++ LD+EA RG Sbjct: 227 KDIRGLLTVTIDGDDAKDFDDAISIVKNEKG-YVLYVHIADVSHYVKENSALDQEAYLRG 285 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 S+Y +V+PMLP LSNG+CSLNP VDRL + C M V KG L Y + +V+ S R Sbjct: 286 NSIYVCDRVVPMLPFDLSNGICSLNPNVDRLTITCAMQVDEKGNLLTYNIFPSVIHSDKR 345 Query: 381 LTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 TY KV L GD+ + ++Y+ + + L L +L K+L K RG I F ++EAK I + Sbjct: 346 CTYKKVNACLDGDKAILQEYSEVKELLFTLESLAKLLKKQSHNRGCIDFNTKEAKIIMDK 405 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSV 500 + +R A ++IEECMILAN+ A + K P+++R+H+ P + + + +V Sbjct: 406 NGYPVDVNVLERGFAEQMIEECMILANVCVAHHMHVNKIPSMYRVHENPDPKKVATICTV 465 Query: 501 LAELGLELPG-GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 L + ++ + LES+ D E+L + LRSM++A YD GHFGLA Sbjct: 466 ANSLRIPFDFYPDEVNASQIQKFLESIQDENAYEVLSMVSLRSMQKARYDAHCLGHFGLA 525 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 L+ Y HFTSPIRRY DL +HR + KEQ + +++ + H S Sbjct: 526 LEEYCHFTSPIRRYSDLVVHRMLHAYCFKEQKRTPSN--------DEKKIEKQAFHISEK 577 Query: 620 ERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN 679 ER A R V D+ K +M +VG VF+G I V FGFFV +D+ ++GLV V +L N Sbjct: 578 ERDAIMMERMVNDYKKAQYMEKRVGQVFEGTIVGVMSFGFFVEMDNT-VEGLVPVHTLSN 636 Query: 680 DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 D+Y +D+ L G++ G+ +++G RV V V ++ ++ FSL+ Sbjct: 637 DFYDYDEDTMTLKGQTHGKVFQMGMRVRVVCTDVQREKGQVTFSLLERRN 686 >UniRef50_Q4A6A7 VACB-like ribonuclease II n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6A7_MYCS5 Length = 735 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 207/743 (27%), Positives = 348/743 (46%), Gaps = 33/743 (4%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 ++ ++ K K S ELA L I ++ E L ++ + ++ T Y +PE L Sbjct: 7 KLINYI-KARKNVSFIELANYLKINRKDNKE-FSAYLVSLIKRNKIFKTFDSNYYVPELL 64 Query: 83 DLVKGTVIG-HRDGYGFLRVEGR---KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 G + + + FL E K+ +++ + + + ++ D+V+A + Sbjct: 65 RKQSGIIKVASKKQFAFLEFENEAQEKESVFVKFQDLNSALNNDEVIASIYKDHNEKNPT 124 Query: 139 ----ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVV 194 A + ++ +I+G + F P D + ++ V+ Sbjct: 125 RQLLAVVDEIVQRNNQKIIGFIKKDKNTIFFAPADGCFDKVKFELLNLSSKVKINDCVLC 184 Query: 195 ELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP- 253 E+ + +I +V+ + + V L + I + + + +EV Sbjct: 185 EIKKYDKNLVSL--EIKKVITNTSDPNVFVKAYLESTNIDLEFSAETLAESKLIPQEVDL 242 Query: 254 -EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + K R +L +VTIDGE +DFDDA+ +K G + L V IADV++YV+ T L Sbjct: 243 NIKEKFQRKNLTSELIVTIDGESTKDFDDAINVKKLENGNFLLSVHIADVAHYVKEKTNL 302 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D EA RGTS+Y + VIPMLP LSNG+CS+NP VDR + C++ + G YK Y+ Sbjct: 303 DSEALKRGTSIYIANGVIPMLPSELSNGICSINPNVDRFALSCDIEIDQHGNNVNYKIYK 362 Query: 373 AVMSSHARLTYTKVWH-------ILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERG 425 +V++S RLTY +V L +Q L L + L +L K +E +G Sbjct: 363 SVINSKFRLTYKQVQAFFDKDNNFLSLEQKKSSYVKELETMLTNAYELSLILHKYKEAQG 422 Query: 426 GISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRI 485 + FE E K N + ++ I+ +R + LIE+ M+ N A+++ K P L+RI Sbjct: 423 YVDFEIPEPKIFLNEDGTVKEIKIHKRVYSEILIEDFMVRTNEVVAKYLSDLKMPVLYRI 482 Query: 486 HDKPSTEAITSFRSVLAELGLELPGGNKPEPR--DYAELLESVADRPDAEMLQTMLLRSM 543 H+ PS E + S ++ L LG+ + N D+++ + ++ + + + LR+M Sbjct: 483 HENPSEEKLQSLKTNLTALGINIKNINSITSSANDFSKFVYQTRNQRNDYFINLLFLRTM 542 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 ++AIY N GHFGLA + Y HFTSPIRRYPDL +HR + L + + + Sbjct: 543 QKAIYSLNNIGHFGLASEFYCHFTSPIRRYPDLLVHRILTMHLEGK-------SSQEILN 595 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + ++ Q S +E++A E R V D +F+ Q G FK I SV FG FV Sbjct: 596 HFDSKLDSYAQLNSNSEQKAIEIERKVNDLKFAEFLKFQTGQKFKAQIVSVLNFGIFVEF 655 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 + GL+H S+ + Y +++ E+ ++Y++G+ V+V + A ++ E KID Sbjct: 656 -EFGGSGLIHKSNFFDGSYEANEMLTVFASET--KSYKIGEYVDVVIIATDLLEGKIDCV 712 Query: 724 LISSERAPRNVGKTAREKAKKGD 746 L S A + EK + Sbjct: 713 LESQYDAYKLNLTRKHEKPRNSK 735 >UniRef50_Q9PR88 Ribonuclease R n=15 Tax=Ureaplasma RepID=RNR_UREPA Length = 721 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 186/726 (25%), Positives = 344/726 (47%), Gaps = 27/726 (3%) Query: 20 SREFILEHLTKREKPASRDELAVE-LHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 +++ I E ++K E+P LA + L + + + + ++ + + Sbjct: 5 TKQTITEVISKEERPIPAAILAKKVLEKIPTLNKTDVYKLIDLLIQENTIKKLENNRLVI 64 Query: 79 PE-----RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVL-AQPLGAD 132 ++ +G + + G GF++ + + + Y++ + + + D V + Sbjct: 65 GYLDYEFDHEIKQGIITINSKGDGFIKEDNTEIEYYVNKKYLNGALKKDSVKFVKLKKEP 124 Query: 133 RKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 + ++A ++ ++ VG++ T G+ + D L F + I G G + Sbjct: 125 KNNLQDAAVIEIVGHAKDHYVGQFITLPNGGYYIFVDDPL-FYLNINLKDTTGLVNGHKI 183 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 + ++ + T+ A+ ++V ++G G V + + I + V + L+ V Sbjct: 184 LFKIISQTTKD--AIAELVHIIGHKNDVGSDVLSIVYDNGIDPTFDPQVVDLASKLEFYV 241 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 E R + D +++ID ++D DDAVY +K + L ++IADVS+YV+P+T L Sbjct: 242 DEHQNKIRRSIIDREIISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTIL 301 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D +A RGTS Y +VIPMLP +SN +CSLN R+C+ C+M + G++ Y Sbjct: 302 DADAFKRGTSTYLVDRVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYP 361 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 A+M ++ +++Y +V +G + + L E L+ +L + + G + F+ + Sbjct: 362 AIMKNYRQMSYDEVNDFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIK 421 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA----------KEPAL 482 E K I + I+ +R A ++E+ MI AN + F E+ + P + Sbjct: 422 EPKIILDETGVPIDIKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFI 481 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +R+HDKPS + F +L + +P + L+ + + ++ +LLR Sbjct: 482 YRVHDKPSIINLQKFEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLR 541 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 SM +A Y+ N GHFGLA +Y HFTSPIRRYPDL +HR + + Q + Sbjct: 542 SMAKASYEIINTGHFGLASDNYTHFTSPIRRYPDLIVHRLLWMFIFDSQSYTDKQRVELV 601 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ + + + E A + RDV ++M +G F GV+++V+ FG FV Sbjct: 602 N-----KLKLITEESNKNEIIAVKTERDVNAAKFAEYMNLHIGKEFIGVVTTVSSFGVFV 656 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 L++ I+GL+ + +L +D+Y F L+G+ + +G++V VRV N RKID Sbjct: 657 ELENT-IEGLIRIKNLKDDFYDFIPENMTLVGQKRKKIITVGNKVRVRVIEANKLTRKID 715 Query: 722 FSLISS 727 F L++ Sbjct: 716 FELVAQ 721 >UniRef50_C0ECD1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECD1_9CLOT Length = 716 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 218/721 (30%), Positives = 367/721 (50%), Gaps = 19/721 (2%) Query: 23 FILEHLTKRE-KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER 81 I+ L + + EL I+ +E + R + M +G++ +T+ + + L + Sbjct: 8 KIIASLKRAGCRGMVFAELKKICEIKPKE-TDRFRGAVNRMVAEGKIAYTKNRFFHL-KS 65 Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 + + ++ + + F + + +++ + + I GD VL +P E ++ Sbjct: 66 IGVYAAEIVRNSRTFCFAQRASDEARIFIPGKYSRGAILGDLVLVRPQAQL-GDSEEGQV 124 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 + S G E FV P D+ I + I A+ G V+ ++ R + Sbjct: 125 FSIYKNGPSAFSGVLMQEDEDYFVQP-DNLSKDRIPVRSKSIGDAKPGDKVLAKVVLRGS 183 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE-VPEEAKAGR 260 R ++ + ++ G L H I +PQ V +Q + E+ + + + R Sbjct: 184 RHSEHICELTGAYGSAETAAACARAVLDAHGITEEFPQEVLEQARSISEQGIRDSERVHR 243 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 +DL DLP+ TID D++D DDA+ EK + + V IADVS+YV TPLD+EA RG Sbjct: 244 LDLTDLPIFTIDSADSKDLDDAISIEKAED-CYHVGVHIADVSHYVGYRTPLDQEAFRRG 302 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TS+Y+ ++VIPMLP+ LSNG+CSLNPQ DRL M VS G L + F + V+ S + Sbjct: 303 TSIYYANRVIPMLPKELSNGICSLNPQEDRLAFSALMNVSLDGELMDFTFRKTVIRSRVK 362 Query: 381 LTYTKVWHILQG--DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 Y +V +L+G D+DL+++Y+ ++ L+ +H LY+ L + + +RG E+ E+K I Sbjct: 363 GVYKEVNALLEGGADEDLKQKYSEVLPSLQLMHELYQRLFQNKVKRGAPQLETSESKIIV 422 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + I+ + + +IEE M+LAN +AA ++ K P ++RIH+ PS E ++S + Sbjct: 423 DENDVAVDIQPRVQGLSEGMIEEFMLLANEAAATLAKREKLPFVYRIHEHPSPEKLSSLK 482 Query: 499 SVLAELGLE-LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFG 557 +L LGL L K +P A +L S D ++ T +LRSM +A YD GH+G Sbjct: 483 EILERLGLPSLRVDKKVKPGVLAGILTSSRDSGLFPIINTQVLRSMAKAQYDERPVGHYG 542 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LAL++YAHFTSPIRRYPDLT+HR + + + T + + + Q + + Sbjct: 543 LALENYAHFTSPIRRYPDLTIHRILTEYV------VLHETPDKIHKRYDKFVAQASKQST 596 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 E A + R+ D K +++ +G F G+I+SV G G ++ L++ ++G V V L Sbjct: 597 ETEITAMQIERECNDRYKAEYIRQHIGEEFDGIITSVLGRGLYIELENT-VEGYVKVEDL 655 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 + Y D L +G+ YR+GD+V ++ AV+++ +IDF + + Sbjct: 656 NG-IYEHDGFT-ELKNHQTGKRYRVGDKVRIQCVAVDVNAGRIDFIIPDDHAEVPQERRR 713 Query: 738 A 738 Sbjct: 714 P 714 >UniRef50_B8GZL3 Ribonuclease R n=5 Tax=Caulobacteraceae RepID=B8GZL3_CAUCN Length = 760 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 251/767 (32%), Positives = 369/767 (48%), Gaps = 35/767 (4%) Query: 11 AEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVF 70 K +P RE +L L + + ++A ++G ++ LR +R +E G L Sbjct: 11 KPKPPAGLPDRETLLAFLRDAGET-GKADIARHFGLKGADRR-ALREMIRELEAQGALAK 68 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLS--------SEQMKTC-IHG 121 R+ +A L V + RDG G L V+ K D + E G Sbjct: 69 RGRKGFAEAGSLPPVGVADVVERDGDGELYVKLTKSDDDVPNVRLAPGKGEAAAGAPGLG 128 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++L + G EA++++ L +I+G V P D + +++ P Sbjct: 129 DRLLVR-FERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKESLVLDPS 187 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + G +V+ ++ R GK++EV+G A IA+ +H IP + +A Sbjct: 188 VAHDFKEGDLVLAQVGTHGGRYGPKPGKVLEVVGTENDPRAASLIAIHSHGIPTGFSEA- 246 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLWV 297 + E AGR DLRDLP VTID DARD DDAVY GG+ +WV Sbjct: 247 ---AEAEAKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDEDETNKGGFVVWV 303 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 AIADV+ YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL +R + M Sbjct: 304 AIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLAVRM 363 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 GR G++F +M S A+L+Y + + G D + L L+ L + Y+ + Sbjct: 364 VFDKSGRKKGHRFVRGLMRSAAKLSYEQAQAAIDGQPDDK-AGPLLDPILKPLWDAYRTM 422 Query: 418 DKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKA 477 R+ R ++ ES+E + I I I + +AHKLIEE M+ AN+ AA +E Sbjct: 423 KIGRDARSPLAIESDERRIIIKG-GEITSITKRASLEAHKLIEEMMVQANVCAAESLEAK 481 Query: 478 KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQT 537 + P ++R+HD PS E + + L L + G P+ + +LLE + P+A ++ Sbjct: 482 RSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTARFNKLLEETRESPNAAIINE 541 Query: 538 MLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 ++LR+ QA Y +N GHFGL L YAHFTSPIRRY DL +HR + L Sbjct: 542 VVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTD------ 595 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGF 657 G + ++ + + AERRA A RD D F+ D+VG F+G I+ VT F Sbjct: 596 --GLTDQDIAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVGATFEGRITGVTRF 653 Query: 658 GFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDE 717 G F++L D DGLV VSSL +++ D L+GE +G+ + LG VEV++ Sbjct: 654 GLFIKLADTGADGLVPVSSLGQEFFVHDDKMHALVGERTGKRWPLGLSVEVKLVEATPVT 713 Query: 718 RKIDFS-----LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 + F L + PR R+ A K G G RR + Sbjct: 714 GGLLFEMLSEPLPPDPKMPRPRLGARRQAAVKPRGGLPKGVRRGKRR 760 >UniRef50_A9G9F9 Ribonuclease R n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9F9_SORC5 Length = 790 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 246/789 (31%), Positives = 384/789 (48%), Gaps = 37/789 (4%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 RE +++ L+ ++ +E+A L +E + L+R L + +G +V Q + + Sbjct: 19 REAVVDLLSSFKRALHANEIAERLGVE-PSRYAKLQRLLEELSLEGSIVALPGQRFRTSQ 77 Query: 81 R-----LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG 135 + +GT+ H G+GF+ + G DD+Y+S E M +HGD V+ + R+G Sbjct: 78 KQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGALHGDTVVVRISTRSRRG 137 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI------MGARMG 189 E IVRV+ + +++ G ++ PDD R+ I+I P + A G Sbjct: 138 -VEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIVPREPGAPLVPPDAEDG 196 Query: 190 FVVVVELTQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 VV + + P G + VLG + V L I + Sbjct: 197 AAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREGIEEEHAPEAIAEAEAF 256 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 EVP EA GR DL LP+ TID EDARD DDAV+ ++ G +R W+AIADVS+YVRP Sbjct: 257 GGEVPAEALEGRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGSYRAWIAIADVSHYVRP 316 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 + LD+ A RG SVY P + IPMLP LS+ LCSL P V RLC+ E+ + + + Sbjct: 317 GSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLCLCVEVELDATAAVRRA 376 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLR--EQYAPLVKHLEELHNLYKVLDKAREERGG 426 + E + S A+LTY V L + + L L+ + +L ++L R RG Sbjct: 377 RVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVMWDLARLLRGRRMRRGA 436 Query: 427 ISFESEEAKFIFNAE-RRIERIEQTQRND----AHKLIEECMILANISAARFVEKAKEPA 481 + + EAK + + + +++ + A++LIEE M+LAN + A+FV P Sbjct: 437 LDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLLANETCAQFVVDQGIPT 496 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 +FR H P + F ++ ELGL + +P+ + L+ + P ++L +LLR Sbjct: 497 VFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKKLDAHPQKQVLHMLLLR 556 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 +MKQA+YD N GHFGLA +Y HFTSPIRRYPD+T HRAI+ +L E+ + Sbjct: 557 AMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAVLRGERVDRSEAA---- 612 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 E + + S ER+A E R+V D + M ++G+ F+G ++ + G G +V Sbjct: 613 ----TERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGDTFEGTVTGIVGGGVYV 668 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 ++D F+D LV + SL D Y D G R++G SG +GD + V++E V + R + Sbjct: 669 NIEDPFVDVLVRMESLGPDQYEIDDEGLRVIGRRSGDRIAIGDAMLVQIEDVAILRRAV- 727 Query: 722 FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAK 781 R G+ ++ K + R + + +G K +K Sbjct: 728 -------YGRRLAGEPTADEPKPRRLRRDAADARPPRRVKISKSTKPLKGMKTSKRTQGG 780 Query: 782 KDARKAKKP 790 K A+ KK Sbjct: 781 KSAKVRKKQ 789 >UniRef50_B2IW45 VacB and RNase II family 3'-5' exoribonuclease n=18 Tax=Cyanobacteria RepID=B2IW45_NOSP7 Length = 784 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 202/761 (26%), Positives = 350/761 (45%), Gaps = 48/761 (6%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 +L + T +K +R L +L E E+ L+ L L +E+ G LV R Y Sbjct: 8 LLANFTD-DKLVARKVLEKKLGCEDEKSLQKLHIALDVLEKIGILVKER-GKYRRVSEEG 65 Query: 84 LVKGTVIGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARI 141 +++ + G+ F + +D+Y+ + +GD+VL + L + R E + Sbjct: 66 IIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRSPEGEV 125 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM-GARMGFVVVVELTQRP 200 +L ++ R VP D RL F++ I P+++ + +V VE+ + P Sbjct: 126 KLILERSNHTLLARIKQVETGFRAVPLDDRLLFELKIQPNEVKLEEAIDHLVHVEVLRYP 185 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 + +G++V++LG + +D+ H++ +P V + A L +++ + R Sbjct: 186 LAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDHVLEAAAKLPKKLLKADLKNR 245 Query: 261 VDLRDLPLVTIDGE--DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 +DLR+L +TI+G D + ++A EK G W L V I DVS+YV+P LDREA Sbjct: 246 LDLRNLFTLTIEGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHYVQPDEALDREALK 305 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSS 377 RG SVY V+P+LP V++ CSL P DRL + +T+ G + ++ +V++ Sbjct: 306 RGKSVYLGELVLPILPPVVAER-CSLIPGSDRLTISFLITIDPQSGEVLEWEIQPSVINV 364 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 LT + IL G+ + Q +V+ L++L L + + R RG + ++ Sbjct: 365 ETALTTEQAQAILTGESQV--QSPQVVQILQDLQALQTGVKQVRLNRGSLQLNLPPSQNA 422 Query: 438 FNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF 497 + E + + L+ E ++L N A + PA++R+ P E + Sbjct: 423 YYDEGILGAVVVND-LPVRSLLTELVLLVNQLIATHLNALGVPAIWRVQGTPDVEDVQEM 481 Query: 498 RSVLAELGLE--LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGH 555 + LG++ L +P DY L + A+ P ++L +L ++K + Y H Sbjct: 482 LKLAVNLGVDLTLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDTLKPSAYSTTKGSH 541 Query: 556 FGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY----------- 604 FGLAL Y HF++P+RRYPDL + R LL + + Sbjct: 542 FGLALPQYVHFSAPLRRYPDLLMQRVYYTLLENGRDRRNTRVRERVNLRHSSSHEEINWN 601 Query: 605 ---------SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 ++ ++ + E+ EA D+A K M ++G VF+GVI+ V Sbjct: 602 VLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITGVQ 661 Query: 656 GFGFFVRLD--------------DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYR 701 +GFFV ++ L ++GLVHVSSL +D+Y + Q L G + +YR Sbjct: 662 SYGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASYR 721 Query: 702 LGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKA 742 LGDRV V+V++V+ ++ID + S+ P+ + + Sbjct: 722 LGDRVAVQVKSVDYYRQQIDLVTVGSDGVPKGLTGNGSNEE 762 >UniRef50_C6ADW9 Exoribonuclease n=5 Tax=Bartonella RepID=C6ADW9_BARGA Length = 758 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 238/762 (31%), Positives = 373/762 (48%), Gaps = 40/762 (5%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 + K N P++E IL + + +S+ E+A +++G+ ++ LR LR ++ + Sbjct: 12 SSFKEKN-FPNKEEILSFINENPNHSSKREIAKAFNLKGDSRI-WLRDILRELKDQNPIS 69 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH--------G 121 R++ + + + G F+ +D + ++ + H G Sbjct: 70 KQRKRAINKGKLPPVTLVKISGRDKDGSFIAQPLEWEDSPKPNIEIHSFHHIKGSSIGVG 129 Query: 122 DQVLAQPLGADRKGRRE----ARIVRVLVPKTSQIVGRYFT-EAGVGFVVPDDSRLSFDI 176 D +L + RI+R + E + P D + + ++ Sbjct: 130 DHILVKVFRNKNSESSSPLYMGRIIRKIDVSPKSAFAVVRKFENNQWRLDPIDRK-TNEL 188 Query: 177 LIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI 236 ++ M +G +V VE+ + T KI VLG IA+ + IPYI Sbjct: 189 IVEMSPEMKIEIGDLVEVEIKK-NTGYGLKSAKIKNVLGHIKSEKTLSMIAILSKGIPYI 247 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC----EKKRGGG 292 +P++V +QV +K R D R LP +TID DA+D DDAVY + G Sbjct: 248 FPESVLEQVKHIKA----ANMDNREDWRQLPFITIDPPDAKDHDDAVYATKDKDPANNDG 303 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 W + VAIADVSYY++ + LD+EA RG SVYFP V+PMLPE LS+ LCSL +R Sbjct: 304 WIIIVAIADVSYYIKTGSALDKEALKRGNSVYFPDTVVPMLPERLSHDLCSLREGKERPA 363 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELH 411 + M + G + F+ ++ A+L+Y +V ++G+ + E+ A L + L+ L Sbjct: 364 LAVRMIFDANGNKRKHSFHRTMIRVRAKLSYQEVQLAIEGN--INEKTAALFESILQPLW 421 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA 471 Y L AR R + E E K I + I+ + + +AH+LIEE MI ANI+A+ Sbjct: 422 EAYTCLKAARNRRQPLELEIAEKKIILDQNGCIKDVVSETQLEAHRLIEEFMIQANIAAS 481 Query: 472 RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD 531 +++ +P ++RIH+KPS RS L LG+ L G++ +L V + P Sbjct: 482 ETLKQHHQPLIYRIHEKPSLAKQEILRSFLQSLGIPLSRGSELTSARLNSILAKVTNTPQ 541 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 E++ ++LRS QA Y+P+N GHFGL L +Y HFTSPIRRY DL +HRA+ L Sbjct: 542 KELINQVILRSQSQAEYNPKNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKTLKLGND 601 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 +T E + ++ S+ ERRA A R+ D L ++ +++G +F G I Sbjct: 602 QLTDTQEQ--------NLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIGRIFTGRI 653 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 S VT G F+ LD L DG VH+S+L NDYY FD+ L+G+ S + Y+L D VEV++ Sbjct: 654 SGVTKAGLFISLDKLNTDGFVHISTLKNDYYHFDEAQHVLIGQRSHKGYQLSDVVEVKLI 713 Query: 712 AVNMDERKIDFSLISSER----APRNVGKTAREKAKKGDAGK 749 V + F L++ R +P + K +K K GK Sbjct: 714 TVQPFAGALSFELLTKPRPIKFSPTSYHKNKLKKQKHTFYGK 755 >UniRef50_B0VHG7 Putative ribonuclease R n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHG7_9BACT Length = 763 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 195/755 (25%), Positives = 344/755 (45%), Gaps = 37/755 (4%) Query: 21 REFILEHLTKREKP-ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ ILE+ K S +E+ + E L L + +G L R+ Y L Sbjct: 7 KQAILEYFQKYPHTGLSYNEIVNTFQLNKAE-KALLSGILSGLMEEGILTKDRK-KYHLQ 64 Query: 80 E-----------RLDLVKGTVIGHR--DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 + L++G G+ + + + D Y+ +E + H D V Sbjct: 65 KMPKAKQPSPTPNPKLLQGIFDATPLSRGFSYAFIRTPEKDYYVDAEDILNAFHNDIVAF 124 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA 186 +P + + A I +V+ T Q VG G + + ++ + Sbjct: 125 EP-KYRKGHQDSAIIRKVVKRSTEQFVGELIRRNGFSTFICSNPKVFRWFFV--SDPAQG 181 Query: 187 RMGFVVVVELTQR--PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 G VV+++T P VGK++E+LG + + + +R + +P +P+ V + Sbjct: 182 ENGDKVVLKVTNWGNPQMGKVPVGKVIEILGKSGEPEVELLAVIRQYNLPLEFPEDVIAE 241 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 L E+ E R DLR+L TID A+DFDDA+ EK G WRL+V IADV++ Sbjct: 242 ANLLSAEIKPEDYRNRRDLRNLYSFTIDPITAKDFDDAIAVEKTSKG-WRLYVHIADVAH 300 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 Y+ + +EA RG S YFP +VIPMLPE LSN +CSL P+ ++LC+ + KG+ Sbjct: 301 YLSVEGAIFQEASKRGNSFYFPKRVIPMLPERLSNLICSLRPEEEKLCLTVQTDFDRKGQ 360 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + + YE+V+ S +RL Y +V + G + PL L E L ++L + R Sbjct: 361 IIEQQIYESVICSQSRLNYDEVDELFAGKKTDIPI--PLQDILLEARALSRLLTEKRMNA 418 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 G I F+ E ++ ++ ++ + + ++HK+IE M++AN A + + ++R Sbjct: 419 GYIFFDLPEIEYEYDENGFLKCLTLAEETESHKIIENFMLVANEFVATRLSQTAPATIYR 478 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK 544 IH+ P + +L+ G++ + LL S + ++ +LLRSMK Sbjct: 479 IHNDPDFNKLERLIELLSYYGVKWVMYENLN-KSIQYLLNSFPNEAYHKVFDRILLRSMK 537 Query: 545 QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 +A Y E+ HF LA+++Y HFTSPIRR DL +H K L T + Sbjct: 538 KARYSTEHIHHFALAMENYTHFTSPIRRLCDLVVHYLCKTWL----------CHTSNQKF 587 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 + ++ + S E +AD++ RD+ M ++ G +++G++ SV G V+L+ Sbjct: 588 TPSQLKHFAEVASEQEIQADQSERDIEMVYSLALMREKEGELYEGMVISVNSRGLIVQLE 647 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV--NMDERKIDF 722 ++ + G++ SL + + + R + + + Y+L D + V + V ++ I Sbjct: 648 EIPVTGVIKEISLGEGNWEYLEREMRYINRRTHKYYQLMDTLTVIIGYVEDDIYLFPIPE 707 Query: 723 SLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 +L + ++ K +G+ G + Sbjct: 708 TLRHNVSKTKSSLSHKSASQKPKPSGRTGSPSSKR 742 >UniRef50_Q9Y2L1 Exosome complex exonuclease RRP44 n=46 Tax=Metazoa RepID=RRP44_HUMAN Length = 958 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 169/742 (22%), Positives = 293/742 (39%), Gaps = 83/742 (11%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYAL----------PERLDLVKGTVIGHRDGYGFLRV-- 101 L RL + +G + + + ++ + ++GT R+ Y V Sbjct: 206 ELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWI 265 Query: 102 ----EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK----------------------- 134 E K+ + + + +H D V + L + Sbjct: 266 HGDNEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEE 325 Query: 135 -------------GRREARIVRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDIL 177 + R+V ++ G E+ P D R+ I Sbjct: 326 TERMLKTAVSEKMLKPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPR-IR 384 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI- 236 I Q G ++V + P G V LGD ++ L H++P+ Sbjct: 385 IETRQASTLE-GRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 443 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + QAV + + + E+ R DLR L + ++D D DDA++C + G + Sbjct: 444 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 503 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+++RP LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C Sbjct: 504 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 563 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 ++ + KF ++V++S A LTY + + D + L L+ L K+ Sbjct: 564 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRI----DSANMNDDITTSLRGLNKLAKI 619 Query: 417 LDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFVE 475 L K R E+G ++ S E +F ++E ++ + + + ++EE M+LANIS A+ + Sbjct: 620 LKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIH 679 Query: 476 -KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 + E AL R H P LE+ + + ES + Sbjct: 680 EEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTL 739 Query: 535 LQTMLLRSMKQAIYD----PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 L+ + R M QA+Y + H+GLA Y HFTSPIRRY D+ +HR + + + Sbjct: 740 LRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADC 799 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 + T ++ + ++ + + A A R + F + + Sbjct: 800 TYPELT--------DKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHV--SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 I V V + ++G V N +D L E + + + D+V+V Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKV 909 Query: 709 RVE--AVNMDERKIDFSLISSE 728 ++ + N+ +KI SL+ + Sbjct: 910 KIMLDSSNLQHQKIRMSLVEPQ 931 >UniRef50_Q7UFR0 Ribonuclease R n=1 Tax=Rhodopirellula baltica RepID=Q7UFR0_RHOBA Length = 764 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 210/767 (27%), Positives = 355/767 (46%), Gaps = 50/767 (6%) Query: 20 SREFILEHLT----KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQC 75 S+E I L +P+ ++A L + + +RR ++ + +G+L++ Sbjct: 4 SQELIDRVLRLVHAAEYRPSKPKQIAALLEL-DADGYREVRRVIKQLVLEGRLIYGGNHL 62 Query: 76 Y----ALPERLDLVKGTVI-GHRDGYGFLRVEGRK--------DDLYLSSEQMKTCIHGD 122 A+ D ++GT G+GF+R +D+++ + + GD Sbjct: 63 VVAAAAVGGPTDQIRGTFRRAMGGGFGFVRPSSGGGNADADVPEDVFVPTGMTAGALEGD 122 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA----------GVGFVVPDDSRL 172 V + R G E ++V VL Q G +F+ V D Sbjct: 123 LVAVTIEPSRRGG-IEGKVVEVLQRARRQFTGTFFSSPQPDQPGSDTIEGPVVYLDGVHY 181 Query: 173 SFDILIPPDQIMGARMGFVVVVELTQRP-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTH 231 + + + + + G + VE+ P I+E LG + + +R + Sbjct: 182 EAPVSVGDVRGLPLQDGDKIFVEIVDFPDEESGGGEAVILERLGSSKNPAIDTLTIMRQY 241 Query: 232 EIPYIWPQAVEQQVAGLKEEVPEEAKA-GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 +P + + V + + ++ R DL D+ +TID DARDFDDA+ ++ Sbjct: 242 ALPDEFSEDVLDEAREQADAFDDDVVPTDRKDLTDMLTITIDPFDARDFDDAISLQR-ED 300 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 G WRLWV IADVS++V P LD EAR RGTSVY P +VIPM+PE++SN L SL P+ R Sbjct: 301 GRWRLWVHIADVSHFVPPGGKLDVEARRRGTSVYLPDRVIPMIPEIISNHLASLQPERMR 360 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP-LVKHLEE 409 L E+ + +T + + A + S R Y ++ + ++ + + + L Sbjct: 361 LVKTVEIEMLDDLTITHSEVHNAAIRSDKRFNYEQIDQFIASPAAFQKDWGDSICELLTH 420 Query: 410 LHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANIS 469 +H L + K R + G +S + + K + +++ QT+ ++H++IEE M+L N + Sbjct: 421 MHTLAMQIRKRRFKDGALSMDMPDIKLELDRTGKVKGAYQTENTESHQIIEEFMLLGNEA 480 Query: 470 AARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR 529 A +++ + L RIH P + S + +LGL N + +L+ VA Sbjct: 481 VATWLDDQELNFLHRIHAPPERRKLRQLTSFVKDLGLGFD--NVESRFEIQAVLDKVAGT 538 Query: 530 PDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589 + +L+SM +A+Y P GH+ L + Y HFTSPIRRYPDL++HR ++ L+ Sbjct: 539 TLENAVNFAVLKSMSKAVYGPHREGHYALDKEHYCHFTSPIRRYPDLSVHRLVQRLI--- 595 Query: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649 + S E+++LG CS AER A +A R++ F+ + G + Sbjct: 596 -------EQKSTPDESFAELVKLGHECSDAERNAAQAERELIQLKLLHFLKKKQGETLEA 648 Query: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR 709 VIS V G R L +DG + V+ L +D YRF++ GQ L G SG +RLGD + VR Sbjct: 649 VISRVFADGIHARCLKLPVDGFIPVTELPSDQYRFERRGQSLTGFKSGNRFRLGDHLTVR 708 Query: 710 VEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQ 756 + V++ +R++ ++ + A ++ + G KK R Q Sbjct: 709 IGKVDLQDRQLYLEVVKNHSAAKSD-----PRGPSGSKSKKSPLRHQ 750 >UniRef50_C8WIL7 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIL7_EGGLE Length = 701 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 219/713 (30%), Positives = 339/713 (47%), Gaps = 67/713 (9%) Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPL 129 TR P +G + G+GF++ + ++ +M GD V PL Sbjct: 3 RTRSHTRRHPRSNP--RGVLSVRGGGFGFVQTAEGE--FFVPESKMAGAFDGDLVEVAPL 58 Query: 130 GADRKGR---------------REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 + AR++RV+ +VGRY G VVP+D+ + + Sbjct: 59 PVQSGRKKQPHERKADLRAGEKPAARVLRVVDRAHDTLVGRYEVAEPFGVVVPEDANIPY 118 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 DI G +V V +T P+R T A G I EVLG AVD+ + H++ Sbjct: 119 DIFTMRADRPDIEDGSLVRVRITTFPSRNTAATGVIEEVLGLADDEHAAVDVVIARHKLE 178 Query: 235 YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG---- 290 ++ + + + +G DLR+ TID DARDFDDAV E Sbjct: 179 TVFSEGALSEARSAVLDEDGALASGYRDLRERFTFTIDPADARDFDDAVSLEPVSTCGVG 238 Query: 291 -------------GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 WRL V IADV++YV ++ LD +AR R TSVY +VIPMLP+ L Sbjct: 239 TGIRVVDERGLGVARWRLGVHIADVAHYVPWNSSLDLDARRRATSVYLVDRVIPMLPDEL 298 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL-QGDQDL 396 S LCSL P R M ++ + + RL Y Y A++ SHARL+Y + +L + + Sbjct: 299 SGDLCSLKPDEVRRTMTADLYLDDRARLVAYDLYPALIRSHARLSYEEAQALLDRCHPER 358 Query: 397 REQYAP----------------LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA 440 + A L L L L K +RE GG+ F+S EA+ + + Sbjct: 359 SAEGAESKDLVRRDGACAPGDGLSDRLAALSRLAKQRFASRERAGGLDFDSVEARVVLDE 418 Query: 441 ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSF--- 497 E I+ + DA LIEE MILAN + A+ + AK P+L+R+H++PS +++ + Sbjct: 419 EGSPTGIDLRVKTDATSLIEEAMILANETVAKHLRDAKFPSLYRVHEQPSADSLAALVPV 478 Query: 498 -RSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + ++ + +LE+ A+RP+ E++ T+LLRSMK+A+Y P+ H+ Sbjct: 479 FQDFAWFRDIDQADFIAGDAHVVQRVLEASAERPEGELVSTLLLRSMKRAVYRPDCAAHY 538 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA +Y HFTSPIRRYPDL +HR +K L+ + + + +H Sbjct: 539 GLASGAYTHFTSPIRRYPDLVVHRMLKALIGGRPEK---------FDQEKSALPWIAEHS 589 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 S ER A++A R+ + +++ VG F +S V +G +VRLD+ +GL+ + Sbjct: 590 SDMERIAEKAARESQEVKLIEYLERFVGQTFSATVSGVATYGAYVRLDNT-AEGLIPCKN 648 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 L ++Y+ D V RL G+ +G +YRL R+ V + + + R++DF ER Sbjct: 649 LGSEYFALDPVQHRLTGQDTGASYRLAQRLAVVLVSADPRARRLDFRPARDER 701 >UniRef50_A9NF96 3'-5' exoribonuclease, RNase R/RNase II family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF96_ACHLI Length = 728 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 221/761 (29%), Positives = 362/761 (47%), Gaps = 34/761 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL 78 ++EFI ++ + EL E++ E ++L + + + + ++ YAL Sbjct: 1 MNKEFIKWFYDQKSIQVTY-ELVKEVYKEKTDELLEAHKEYFDIIDNTHIQL--KKRYAL 57 Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRRE 138 G + + FL + D+ + + + D VLA +G + Sbjct: 58 --------GKITI-KRTIAFLMMPEGAKDIAIDLFDLNGAMESDIVLADIVGYNPY---- 104 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQ 198 I ++ ++++ + + D + ++I D G VV++++T+ Sbjct: 105 --IKEIIHSNLTKLIADVKIRSDK-KMRFDANEAQNKLIIVKDVPDYLVDGHVVLLDVTE 161 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 RT+ K EV+G M + + +E P + + V ++ +K + E + Sbjct: 162 --VTRTQIFTKFREVIGHKNDPDMEIVKIVYEYEWPLKFSKEVLNELHHIKID-HEYERK 218 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R D+ D +VTIDG DA+D DDA+ E G ++L V IADVSY+V+ + L+ A N Sbjct: 219 TRRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEAAYN 278 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TSVY +VIPM+P LSN LCSLNP D+ + CEM ++ + Y Y +++ S Sbjct: 279 RATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVVNYDIYASIIQSK 338 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY V + + Q + + K L ++ + + L + R +RG I F S E KF+ Sbjct: 339 HRLTYHDVNQLFKEHQSTG--FKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNSTELKFVL 396 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + + +E+ ++A LIE MILAN + +R P ++R+H+KP++E + Sbjct: 397 DVNGDVLGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTSEKLDIAF 456 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 A+LG + K + L + VA P ++ +LLRSM++AIY + GHFGL Sbjct: 457 ESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQKAIYSEKPIGHFGL 516 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A Y+HFTSPIRRYPDL LHR I+ L+ + Y + M +H S Sbjct: 517 ASAYYSHFTSPIRRYPDLLLHRMIRDLMLNNPDAETLKKLKKHY---RDLMPSYSEHTSN 573 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 ER+A R+V +M + F G I S+ GFFV+L++ I+GLV+V +++ Sbjct: 574 QERQAVNMEREVNKLKSRQYMAQFINQSFDGQIVSMMPSGFFVKLEN-GIEGLVNVRNVN 632 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPR-NVGKT 737 Y +D E G+ YRLGD++ V++ V+ E IDF++ A KT Sbjct: 633 Q-YLIYDDEALLFYTER-GKRYRLGDKIRVKLIKVDEVENNIDFTIDPQNHAEDYKAHKT 690 Query: 738 AREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPK 778 + K K+ GK R K + P S +G K + Sbjct: 691 STSKVKRKPNPADMGKSR---KTKSKAPKSGKKGFGPKKNR 728 >UniRef50_Q49AG4 DIS3 protein n=8 Tax=Deuterostomia RepID=Q49AG4_HUMAN Length = 796 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 169/742 (22%), Positives = 293/742 (39%), Gaps = 83/742 (11%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYAL----------PERLDLVKGTVIGHRDGYGFLRV-- 101 L RL + +G + + + ++ + ++GT R+ Y V Sbjct: 44 ELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWI 103 Query: 102 ----EGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK----------------------- 134 E K+ + + + +H D V + L + Sbjct: 104 HGDSEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEE 163 Query: 135 -------------GRREARIVRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDIL 177 + R+V ++ G E+ P D R+ I Sbjct: 164 TERMLKTAVSEKMLKPTGRVVVIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPR-IR 222 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI- 236 I Q G ++V + P G V LGD ++ L H++P+ Sbjct: 223 IETRQASTLE-GRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQP 281 Query: 237 WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLW 296 + QAV + + + E+ R DLR L + ++D D DDA++C + G + Sbjct: 282 FSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVG 341 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 V IADVS+++RP LD+E+ RGT+VY + I M+PE+LS+ LCSL VDRL C Sbjct: 342 VHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCI 401 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 ++ + KF ++V++S A LTY + + D + L L+ L K+ Sbjct: 402 WEMNHNAEILKTKFTKSVINSKASLTYAEAQLRI----DSANMNDDITTSLRGLNKLAKI 457 Query: 417 LDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFVE 475 L K R E+G ++ S E +F ++E ++ + + + ++EE M+LANIS A+ + Sbjct: 458 LKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANISVAKKIH 517 Query: 476 -KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEM 534 + E AL R H P LE+ + + ES + Sbjct: 518 EEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTL 577 Query: 535 LQTMLLRSMKQAIYD----PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 L+ + R M QA+Y + H+GLA Y HFTSPIRRY D+ +HR + + + Sbjct: 578 LRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGADC 637 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 + T ++ + ++ + + A A R + F + + Sbjct: 638 TYPELT--------DKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 689 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHV--SSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEV 708 I V V + ++G V N +D L E + + + D+V+V Sbjct: 690 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDT--VFHVFDKVKV 747 Query: 709 RVE--AVNMDERKIDFSLISSE 728 ++ + N+ +KI SL+ + Sbjct: 748 KIMLDSSNLQHQKIRMSLVEPQ 769 >UniRef50_A5IXZ7 Ribonuclease R (VacB like (Shigella flexneri) ribonuclease II) n=2 Tax=Mycoplasma RepID=A5IXZ7_MYCAP Length = 729 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 204/749 (27%), Positives = 359/749 (47%), Gaps = 32/749 (4%) Query: 19 PSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQC-YA 77 E ++ + K + + L +L+I L L + + F +R Y Sbjct: 1 MINETVVINTIKENPHINTNTLLRKLNISPRHSK-ILTNMLINLSSRDLIAFDKRDSSYV 59 Query: 78 LPERLDLVKGTVIGHRDGYG-FLRVE-----GRKDDLYLSSEQMKTCIHGDQVLAQPLG- 130 +++ ++G + +G F+ VE G K ++SS T ++ D V A Sbjct: 60 ALRKINTIQGPIHFASEGKCAFVDVEELSKNGTKSSYFVSSNNFNTALNNDIVEADVFEP 119 Query: 131 -ADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMG 189 + R A++ +++ + ++G G P + + AR+ Sbjct: 120 ISPDNNRTFAKVKKIIERRCKTLIGVLDNVNGFVTFKPIEPIYKNTSFRIKNIASEARVL 179 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAG-L 248 VVV E+ R + I++ + D V +P +P V + + + Sbjct: 180 DVVVAEIINYENRNKEI--NIIKRITDVNDPMAYVKSLEEARNVPREFPAEVNEYIQKFI 237 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 E + E + R DLR+ +VTIDG +DFDDA+ K + L V IADV+YYV+ Sbjct: 238 PENIKNEDLSMRTDLRNDLVVTIDGSSTKDFDDAISVVKIDENTYELGVHIADVAYYVKE 297 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 +TPLD EA RGTS+Y ++V+PMLP LSNG+CSLNP +RL + C ++ G+ Sbjct: 298 NTPLDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKLGQSIET 357 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 K +V+ S RLTY +V + +D + L K L+ + L +++ + + ++G I Sbjct: 358 KIVPSVIKSKYRLTYERVNEFINESKDFED--KELNKMLKNAYELSQIIREFKNKQGYID 415 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 FE +E +++ R+ I + ++ K+IE+ M+ AN A+F+ +K P ++RIH+ Sbjct: 416 FEIQEPHIELDSDGRVLDISVEKTGESEKMIEDFMVRANEEVAKFITNSKLPMMYRIHEV 475 Query: 489 PSTEAITSFRSVLAELGLELPGGNK-PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 PS E I F VL L + + K P + +++ + + + E L+ + LR+M++A+ Sbjct: 476 PSEEKIEYFLEVLKSLKINVSLNRKHITPLTFQKIINQINSQRNDEFLKMLFLRTMQKAV 535 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y P+N GHFGLA + Y HFTSPIRRYPD+ +HR + + K+Q ++ + Sbjct: 536 YSPDNIGHFGLASECYCHFTSPIRRYPDVIVHRVLWDFVFKKQLNKVDEF--------AA 587 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + ++ S +E A + RDV D ++ ++ + F+G + +T FG F++ D+ Sbjct: 588 NLQKIAAMNSASEENAVQLERDVNDLKFAEYFKSKINSEFEGQVFGITKFGMFIQFDN-K 646 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESS-GQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 D +VH+S++ + + ++ +L ++ + Y+LG V V + + KID L Sbjct: 647 TDAMVHISNIGDGDFEANEQMTKLYSKNDPKKAYKLGQTVRVVITNADETTGKIDCVLAQ 706 Query: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRR 755 + R K K +KG +R Sbjct: 707 DYKT------YLRNKVSKNFNQQKGFNKR 729 >UniRef50_B7QBQ1 Salivary protein Is3, putative n=1 Tax=Ixodes scapularis RepID=B7QBQ1_IXOSC Length = 956 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 199/824 (24%), Positives = 324/824 (39%), Gaps = 100/824 (12%) Query: 19 PSREFILEHLTKREKPA------SRDELAVELHIEGEEQLEGLRRRLRAMERDGQL--VF 70 P I E L +++ + LAV ++ GL +L +E DG V Sbjct: 157 PGYNTIREILANKDRQFFVFTNEHHNILAVSEYVRSLRDHPGLLDKLAKLELDGAAGEVG 216 Query: 71 TRRQCYALPERLD------------LVKGTVIGHRDGY--GFLRV----EGRKDDLYLSS 112 +R+ + PE L +G R+ Y G + + EG + + Sbjct: 217 DKRKGFLFPEHLPQSALHLGIKSGKYEQGKFQASRENYLEGNVVIGGDNEGESRSILIQG 276 Query: 113 E-QMKTCIHGDQVLAQPLGADR----------------------------KGR------R 137 + +H D V+ + L ++ K R Sbjct: 277 RGHLNRAVHDDLVVVETLPEEQWSLPSGLVLLDETQDEDEDKGDEEAKLSKKRAVSNKVP 336 Query: 138 EARIVRVLVPKTSQIVGRYF----TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 RIV +L K G EA VP + R+ I I Q +V Sbjct: 337 TGRIVGILRRKWRPYCGILQPSNIKEATRHLFVPAERRIP-KIRIETRQA-DVLCRQRIV 394 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEV 252 V + P G +V+ LG+ + L H+IP+ + ++V + L + Sbjct: 395 VSIDSWPRDSRYPQGHLVKALGEVGDRATENQVLLLEHDIPHQCFSRSVLDCLPSLPWTI 454 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 + + R DLR L + ++D D DDA++C + G + + V IADVSY+VRP T L Sbjct: 455 GPKEEKNREDLRHLCICSVDPPGCTDIDDALHCRELPNGNYEVGVHIADVSYFVRPGTAL 514 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 D+EA NRGT+VY Q I M+PE+LS LCSL +RL VS + + KF++ Sbjct: 515 DKEAANRGTTVYLVDQRIDMVPELLSANLCSLRGGEERLAFSAIWEVSPEAEVLHTKFHK 574 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 +++ S A LTY + + D L L L+ L K+L R G ++ S Sbjct: 575 SIIKSRAALTYAEAQARI----DDTSLNDELTLGLRGLNRLAKILKAKRIANGALTLASS 630 Query: 433 EAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPS 490 E +F ++E ++ Q + + ++EE M+LAN S AR + ++ E AL R H P+ Sbjct: 631 EVRFHVDSETHDPIDVQTKQLLETNSMVEEFMLLANASVARHIFQEFPECALLRRHPAPA 690 Query: 491 TEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY-- 548 + G + + + + ML+ + R M +A+Y Sbjct: 691 PANLEPLVKAGHSKGFVVEVESGLRLAESLDRAVDPEQPYFNVMLRMVATRCMARALYFC 750 Query: 549 ----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHY 604 PE+ H+GLA+ Y HFTSPIRRY DL +HR + + E + + Sbjct: 751 SGCVAPEDFDHYGLAMPFYTHFTSPIRRYSDLMVHRLLGVCVGAEATYPDLVHKNK---- 806 Query: 605 SMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLD 664 +L + + A A R F D+V + +G + V V + Sbjct: 807 ----CQELCNNLNYRHNMAQYAGRSSVALYTQAFFRDKVLDE-EGYVLFVRENALQVLMP 861 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR--VEAVNMDERKIDF 722 ++ + L D + +DQ G T R DR+ V+ V++ N+ +K+ Sbjct: 862 RFGLEATLF---LKEDGWSYDQEANTQT--CGGVTLRQFDRLVVQLSVDSRNVQHQKVVV 916 Query: 723 SLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPD 766 L+ P+ G + A+K D +K + Sbjct: 917 KLV----DPKIPGVSVEPSARKADDTQKQADDPPRKRSKVAASS 956 >UniRef50_D0LU85 Ribonuclease R n=23 Tax=Proteobacteria RepID=D0LU85_HALO1 Length = 1004 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 239/717 (33%), Positives = 350/717 (48%), Gaps = 26/717 (3%) Query: 67 QLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLA 126 ++ TRR PE G + H GYGF+ +E +++ + + GD+V+ Sbjct: 279 EITRTRRGE-TRPEEDLSRTGRITVHPAGYGFVELEDGTGTVFVPARHRGAALDGDRVVL 337 Query: 127 QPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP--DQIM 184 + E R++ VL +++ G ++ PDD R++ D P D Sbjct: 338 NTWSGYKG--TEGRVIEVLSRGRAKLTGTLQRTGRAVYLEPDDPRIATDYGHVPLIDGPP 395 Query: 185 GARMGFVVVVELTQRPTRRTK-AVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQ 243 +++G VVE+ + PT VG++V VLG ++ L ++P +P+ V + Sbjct: 396 QSKVGQAAVVEICRYPTHERPELVGRLVRVLGKPDDPRTEIEKILAFADLPTEFPRDVAR 455 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + V + RVDLRD P VTID ARDFDDAV E GG R+WVA+ADVS Sbjct: 456 RGDETSTTVRTRDQVDRVDLRDRPFVTIDPVTARDFDDAVCIEDGPHGGPRVWVAVADVS 515 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV P+DREA RG SVY P +V+PMLP LS G+CSLNP+VDR MV + ++ G Sbjct: 516 HYVEIDDPIDREAAVRGVSVYLPDRVVPMLPLPLSAGICSLNPEVDRCAMVVRLDLTDDG 575 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGD-QDLREQYAPLVKHLEELHNLYKVLDKARE 422 R+ F AV+ SHARL Y V L GD + R+ Y P L L L + + R Sbjct: 576 RVLERDFAAAVIRSHARLDYPGVAAALSGDFRGRRDHYRPWAPALSRLAALAQRMRTRRR 635 Query: 423 ERGGISFESEEAKFIFNAE------RRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 RG + E I +A+ + A++L+EE MI AN + ++ + Sbjct: 636 ARGALELTLAEPYVILDADEAELVRDIVRSKGAEDVRQAYELVEEFMIAANEAVGKYFAE 695 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN---KPEPRDYAELLESVADRPDAE 533 P ++RIH P + + VLA G++L + +P ++E++ +P A Sbjct: 696 RNLPTVWRIHAPPEPDRLHELLPVLANFGIKLTVEDIEAATKPTGMRRIIEAIEGQPAAA 755 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 L +LRS+KQA Y + GHFGLA Y HFTSPIRRY DL +HR +K+ L + Sbjct: 756 SLSFQVLRSLKQAQYSTDPIGHFGLASPFYLHFTSPIRRYADLLVHRQLKHYLH--ADGK 813 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 + ++ + + S ERRA E R+ + FM QVG F G +S+ Sbjct: 814 PSGGGARIPAADIDTLAERCAQISTHERRAVEVEREAVSMYRAYFMRGQVGEQFTGRVSA 873 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 VT FG FV LD F++GL+ + L D + FD RL G SG LGD V + V V Sbjct: 874 VTNFGAFVELDAPFVEGLIKLDDLGADAFGFDASSMRLRGRRSGLRLGLGDPVTIEVTNV 933 Query: 714 NMDERKIDFSLISSERAPRNVGKTARE--------KAKKGDAGKKGGKRRQVGKKVN 762 ++ R+IDF LIS G + K+++ + GG+ + GK N Sbjct: 934 SVARRRIDFKLISVAGRSSPSGGESSGEDEGTPYWKSRRSRNKRPGGRDKDRGKGKN 990 >UniRef50_A9GZQ2 Ribonuclease R n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9GZQ2_GLUDA Length = 781 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 259/763 (33%), Positives = 365/763 (47%), Gaps = 56/763 (7%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 RE + +T+ + E+A ++ G E LR LR + +G LV + + Sbjct: 38 DREALRRFVTEASGRVGKREIARAFNL-GPEHKAALRAMLRELALEGTLVPAGARRFRAS 96 Query: 80 ERLDL-----VKGTVIGHRDGYGFLRV-----EGRKDDLYLSSEQMKT-CI-HGDQVLAQ 127 + V GT DG R +G +++ EQ + G++V+A+ Sbjct: 97 AAMPEAALVQVTGT---DPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVAR 153 Query: 128 PLGADRKGRREARIVRVLVPKTSQIVGRYF---------------TEAGVGFVVPDDSRL 172 GR E R +R L +IVG + A G +VP D R Sbjct: 154 LKRLG-PGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRA 212 Query: 173 SFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 + +IP + MGA VVV E K +IV LG +A+ TH Sbjct: 213 KAEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKP-ARIVARLGPMGDARSVSLLAIHTHS 271 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 IP +P + + PE GR DLRD+PL+TIDGEDARDFDDAVY E G Sbjct: 272 IPDQFPAEALSEAERARGVSPE----GREDLRDVPLITIDGEDARDFDDAVYAEPDGDG- 326 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 +RL VAIADV++YVRP + LDREAR RG SVYFP +V+PMLPE LSNG CSL P DR C Sbjct: 327 FRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGC 386 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN 412 + E+ + + G T ++F +M S ARLTY + I+ ++ +++ + L Sbjct: 387 LFAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFT 446 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 ++ L AR RG + + E + RI IE R+D+H+LIEE M+LAN++AA Sbjct: 447 AWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAE 506 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA----- 527 +E+ + P L+RIH PS E + R L+ +G +LP RD +L A Sbjct: 507 ELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEAS 566 Query: 528 -----DRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAI 582 ++ +LR+ QA Y P+N GHFGLAL +YAHFTSPIRRY DL +HRA+ Sbjct: 567 GPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRAL 626 Query: 583 KYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ 642 G G + ++G+ S AERRA A R+ + ++ D+ Sbjct: 627 I--------GMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADR 678 Query: 643 VGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRL 702 VG F G +S VT FG FV L GLV VS+L +D + D+ Q L G G RL Sbjct: 679 VGAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRL 738 Query: 703 GDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKG 745 G V VR+ + F+L+ + A + + Sbjct: 739 GQPVTVRLVEATPVTGGLLFALVGANPAAASGPARRARGTRPR 781 >UniRef50_Q0BU01 Ribonuclease R n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BU01_GRABC Length = 812 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 254/798 (31%), Positives = 363/798 (45%), Gaps = 76/798 (9%) Query: 15 ANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 +PSRE I + + + E+A + G LR L+ M +G L + Sbjct: 41 PGTMPSREAIRRFVAEASGRVGKREIAKAFGL-GAADKLHLRDLLKDMASEGNLAPAGHK 99 Query: 75 CYALP-----------ERLDLVKGTVIGHRDGYGFLR--------VEGRKDDLYLSSEQM 115 + L V +I D G G + + E Sbjct: 100 RFMPAGGSMLPHAKGSSHLPEVAVILITGTDRDGDAVGRPAEWPREAGPPPSVLMHPEPR 159 Query: 116 KT-CI-HGDQVLAQPLGADRKGRREARIVRVLVPKTSQ-IVGRYFTEA------------ 160 + G++VLA+ GR E R ++ L T + I+G Y Sbjct: 160 GRPALAPGEKVLARLRPIGH-GRYEGRTIKRLGGDTPRPILGVYRLSEPVTLVPRSTRTS 218 Query: 161 ----------------GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 G VVP D R + L+P + GA G +V Sbjct: 219 HAARQMLARQNASTAQPEGRVVPTDRRSKAEWLVPAGEEGGAEPGDIVRAMPLPHTGYGL 278 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 K +I+E LG I + TH+IP I+P + + R DLR Sbjct: 279 KP-ARIIEKLGKIGDARSVSLICIETHDIPQIFPDEALSEARKARAVP----LEKREDLR 333 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 D+PL+TIDGEDARDFDDAV+ E+ G+RL VAIADV++YVRP + LDREA RG S Y Sbjct: 334 DIPLITIDGEDARDFDDAVFAERAENDGFRLIVAIADVAHYVRPGSALDREAFKRGNSCY 393 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 FP +V+PMLPE LSNG CSL P DR C+ EM +++ G ++F +M S AR TY Sbjct: 394 FPDRVVPMLPEALSNGWCSLRPDEDRGCLFVEMMINAGGGKIRHRFGRGLMRSTARRTYE 453 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRI 444 +V + + L+ L+ Y L KAR RG + + E K I N + Sbjct: 454 EVQQAHEAGDET----------LDALYGAYHALIKARTARGTLDLDLPERKVILNEAGSV 503 Query: 445 ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 + I R D+H+LIEE M+LAN++AA +E+ P ++R+H PS E + R L Sbjct: 504 DAIIPRPRLDSHRLIEEFMVLANVAAAEELERLHRPCMYRVHAPPSDEKTEALRGFLDSF 563 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 G+ LP + PRD +L+ VA A ++ +LRS QA Y+P+N GHFGLAL YA Sbjct: 564 GISLPPAGQIHPRDLDHILKQVAGTEHAALINETMLRSQSQAEYNPDNIGHFGLALSRYA 623 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRY DL +HRA+ L G + + + +H + ERRA Sbjct: 624 HFTSPIRRYADLLVHRALIAGLKLGVGSLEDDEASRFV--------DIAEHITATERRAA 675 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 A RD D FM D+VG F IS VT FG F+ +++ G+V +SSL +D++ Sbjct: 676 MAERDAIDRYLAAFMADRVGARFAARISGVTRFGLFITVEENGASGIVPISSLPDDFWIH 735 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKK 744 D+ Q L+G +S +RL V VR+ + F+L+ + + + ++ Sbjct: 736 DEREQALIGRNSRAVWRLAQSVTVRLAEATPITGGLVFNLLPGASSSASSRPDSTDRT-N 794 Query: 745 GDAGKKGGKRRQVGKKVN 762 KR G+ Sbjct: 795 TQDRFSSRKRGSPGRSRR 812 >UniRef50_B2UQL2 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQL2_AKKM8 Length = 756 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 223/769 (28%), Positives = 362/769 (47%), Gaps = 52/769 (6%) Query: 21 REFILEHLTK-REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++ ++ H+ +P S+ ELA L+++ Q R + ME +G+LV ++ YAL Sbjct: 6 KDRLIRHMEDGHYEPQSKSELARALNVDSR-QKLDFRALVDQMEEEGKLVRLQKGRYALK 64 Query: 80 -ERLDLVKGTVIGHRDGY-GFLRVEGRK------------DDLYLSSEQMKTCIHGDQVL 125 ER +LV G + R G FL +G +L L + T + GD+V Sbjct: 65 RERRNLVHGMIRILRSGKILFLPRKGDPAAAALGWDTEAVPELELKPNHLGTALDGDRVA 124 Query: 126 AQPLGA--------------DRKGRREARIVRVLVPKTSQIVGRYFTEAGV-GFVVPDDS 170 + +AR+ V S+ +G + T G V+ D Sbjct: 125 VRVERKAARGRRNIRRNRFSSPDADMKARVEEVTERARSRWLGVFRTGKNKPGRVLGDGV 184 Query: 171 RLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRT 230 I + M G +V VE + GKIVEVLG + ++ +R Sbjct: 185 SSPSSIELAEKPAMEVLPGQLVSVEPITCGEEKKAPRGKIVEVLGYPDEPHVDMEAVIRK 244 Query: 231 HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG 290 + + +P +V +++ L + A R D D ++TID ARDFDDA+ Sbjct: 245 YGLSVEFPASVLRELETLPQTPSPGELARREDWTDRTVITIDPASARDFDDAISITATPS 304 Query: 291 GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDR 350 G W L V IADVS++V+P LD EA RG S Y P +V+PMLP LS+ LCSL P V R Sbjct: 305 G-WTLAVHIADVSHFVKPGGSLDGEALRRGNSTYLPDRVLPMLPHRLSDDLCSLRPDVVR 363 Query: 351 LCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 L VCEM KG++ +F +A + S ARLTY + + +L+G+ + + E Sbjct: 364 LTKVCEMKFDKKGKMLRARFADAFIRSKARLTYQEAFAMLKGN-----DKGEVPSTVREA 418 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 NL +L + R +G + + E + + + + R+ I + +++H+LIEECM+ AN + Sbjct: 419 WNLASILRRNRYAKGALDLDFPEVRAVMDKDGRVTGIITEEYDESHQLIEECMLAANEAV 478 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 A ++ P ++R+H++P + + F + G P + + + EL++S+ P Sbjct: 479 ALALKNGNRPTIYRVHEEPDSAKLFEFGQLCRLYGH--PVHDIDQRQYLNELMKSIKGSP 536 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 D ++L+ LL+S+ +A YD E GH+GLA +Y HFTSPIRRY DL +HR++ LLA Sbjct: 537 DEQLLKLALLKSLMRARYDTEPLGHYGLATPNYCHFTSPIRRYADLVVHRSLNPLLANPP 596 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ----VGNV 646 TG + + +H S ER + A +D +++ Q V Sbjct: 597 KGAKGAGSTGR-------LEEDAEHISETERISASAEKDANRMKLFEWLEGQCYADHPEV 649 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV 706 + +++ FG + + L I GLV L + ++ R + G G RV Sbjct: 650 HEALVTETRHFGVLLEIPRLQIKGLVKPDKLPGGRWVYEAFASRWKNDH-GSVLCAGLRV 708 Query: 707 EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRR 755 V V+ +++ DF+++S E+ PR GKTA ++ +G + R Sbjct: 709 PVIPVKVDREQQWADFAIVSREK-PRQTGKTAFPTKQEKGISGRGRRNR 756 >UniRef50_B0T0I6 Ribonuclease R n=6 Tax=Alphaproteobacteria RepID=B0T0I6_CAUSK Length = 777 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 251/774 (32%), Positives = 372/774 (48%), Gaps = 40/774 (5%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 +A K +P RE ++ L + A++ ++A ++G ++ LR LR +E G L Sbjct: 20 KAPKPPAGLPDRETLIAFLRDAGE-AAKADIARHFGLKGADRR-ALREMLRELEAQGALG 77 Query: 70 FTRRQCYALPERLDLVKG--TVIGHRDGYGFLRVEGRKDDLYL--------SSEQMKTCI 119 R+ +A L V V DG ++R+ +DL + + Sbjct: 78 KRGRRGFAEAGALPPVGVADVVERDADGDLYVRLTKGGEDLPMVRLVPGKGDAAAGGAPG 137 Query: 120 HGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP 179 GD++L + G EAR+++ L +++G V P D + +L+ Sbjct: 138 MGDRLLVR-FEQLESGETEARLIKRLGQSAHKVLGVIRKVRRETRVEPVDRKSKESLLLN 196 Query: 180 PDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 + + G +V+ ++ R GK++EV+G+ A IA+ +H IP + + Sbjct: 197 EQEAKDLKDGDLVLAQVGTSSGRYGPKFGKVLEVVGNEDDPRAASLIAIHSHGIPTGFSE 256 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRL 295 GR DLRDLP VTID DARD DDAVY GGW + Sbjct: 257 D----AEAEAHAAKPPTLEGRDDLRDLPFVTIDPVDARDHDDAVYAHPDPDAGNVGGWIV 312 Query: 296 WVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVC 355 WVAIADV+ YVRP + LDR+AR +G SVYFP +V PMLPE LSNGLCSL +R + Sbjct: 313 WVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLREGENRATLAV 372 Query: 356 EMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG-----DQDLREQYAPLVKHLEEL 410 M + GR +KF +M S A+L+Y + + G QD + L L L Sbjct: 373 RMVFDNDGRKKSHKFVRGLMRSAAKLSYEQAQAAIDGIAPPDGQDGDKAGPLLDPILRPL 432 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 ++++ K R +R + ES+E + I + I+ I + +AHKLIEE MI AN+ A Sbjct: 433 WAAFRLMGKGRAQRSPLGIESDERRIII-KDGEIQSITRRASLEAHKLIEEMMIQANVCA 491 Query: 471 ARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 A +E + P ++R+HD PS E + S L + ++ G P + +LL+ + P Sbjct: 492 AESLEAKRTPLIYRVHDTPSQEKVMSLVEFLQTIEVKWSKGEAPTTARFNKLLDDTRESP 551 Query: 531 DAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 A ++ ++LR+ QA Y +N GHFGL L YAHFTSPIRRY DL +HRA+ L Sbjct: 552 HAAIINEVVLRTQMQAHYSSDNLGHFGLNLARYAHFTSPIRRYADLIVHRALIRALKLGD 611 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 G + ++ + + AERRA A RD D F+ D+VG F G Sbjct: 612 D--------GLTDQDISQIKDTAEVITHAERRAMAAERDATDRYIAAFLSDRVGATFSGR 663 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRV 710 I+ VT FG FV+LD+ DGLV VS+L +Y+ D L+GE +G+ + LG VEV++ Sbjct: 664 ITGVTRFGLFVKLDETGADGLVPVSTLGEEYFVHDDRMHALVGERTGKRFPLGLAVEVKL 723 Query: 711 EAVNMDERKIDFS-----LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGK 759 + F L + +APR A K G G RR + Sbjct: 724 REATPVTGGLLFEMLTEALPNDPKAPRPRLGVRARPAVKPRGGLPKGVRRGKRR 777 >UniRef50_UPI0001903083 exoribonuclease R protein n=3 Tax=Rhizobium etli RepID=UPI0001903083 Length = 747 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 252/769 (32%), Positives = 368/769 (47%), Gaps = 86/769 (11%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +PSRE IL + + AS+ ELA ++G+ ++E L+ L+ +E++G L +R+ Sbjct: 39 LPSREVILRFIADHPQKASKRELAKAFGLKGDSRVE-LKHLLQELEQEGMLQKSRKSLIR 97 Query: 78 LPERLDLVKGTVIGHRDGYGFLR--VEGRKDD------LYLSSEQMKT---------CIH 120 P L V I RD G L +D + + + Sbjct: 98 -PGALPPVTVLDITTRDKDGDLIGRPAEWPEDQGVAPAVAIRQQSPAGRQGKGKAPVAGL 156 Query: 121 GDQVLAQPLGADRKGRR--EARIVRVLVPKTSQIVGRYFTE-AGVGFVVPDDSRLSFDIL 177 GD++LA+ A +G ARI++V+ + +G + T G G ++P + R D++ Sbjct: 157 GDRILAKIFPAVDRGGPAYTARIIKVIDRRRGAAMGVFRTAPGGGGRLLPIERR-GEDMV 215 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIW 237 I PD GA IP+++ Sbjct: 216 IDPDFTGGAD--------------------------------------------GIPHVF 231 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGW 293 P AV + + R D RD+PL+TID DA+D DDAVY E GG Sbjct: 232 PPAVMAEAEA----AKPATMSHREDWRDVPLITIDPADAKDHDDAVYAELDPSPDNPGGV 287 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 + VAIADVS+YVRP++PLDREA RG SVYFP +V+PMLPE +SN LCSL +DR + Sbjct: 288 IVTVAIADVSWYVRPNSPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGLDRPAL 347 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNL 413 M+ SS+GR G+ F+ +M S A+L+Y + + G+ D + L L+ L Sbjct: 348 AVRMSFSSEGRKIGHTFHRIMMKSAAKLSYQQAQAAIDGNADDKT-GPMLEPILKPLWRA 406 Query: 414 YKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARF 473 Y V+ + R+ R + + E K + + ++R+ R DAHKLIEE MI AN++AA Sbjct: 407 YAVMKRGRDRRQPLELDMPERKILLKPDGTVDRVFVPPRLDAHKLIEEMMIQANVAAAET 466 Query: 474 VEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAE 533 +EK ++ ++RIHD P+ R LA LG+ L G + +L Sbjct: 467 LEKKRQVLVYRIHDGPTLAKQEVLREFLATLGISLAKGGNVRANSFNGILAKAEGTAHQT 526 Query: 534 MLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQ 593 M+ M+LRS QAIY PEN GHFGL L YAHFTSPIRRY DL +HRA+ L +G Sbjct: 527 MVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGFGEGGI 586 Query: 594 GNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISS 653 + + S ERRA A R+ D L + +VG F G +S Sbjct: 587 TPDE--------EAALDDIAAEISTFERRAMAAERETIDRLIAHHLSTRVGEEFAGRVSG 638 Query: 654 VTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 VT G F+ L D DG + +S+L +DY+ +D+ Q L GE +G YRLGD V V++ Sbjct: 639 VTKSGLFIALPDYGADGFIPISTLGSDYFIYDEAHQALSGERTGLGYRLGDSVTVKLAEA 698 Query: 714 NMDERKIDFSLISSERAPRNVGKTARE--KAKKGDAGKKGGKRRQVGKK 760 + F ++S R ++ + + KG KK G R G++ Sbjct: 699 IPLAGALRFEMLSEGREMPTAVRSFHKAGRRDKGQVRKKPGTRPPRGRR 747 >UniRef50_Q02146 Ribonuclease R 2 n=4 Tax=Lactococcus lactis RepID=RNR2_LACLA Length = 665 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 195/662 (29%), Positives = 317/662 (47%), Gaps = 32/662 (4%) Query: 86 KGTVIGHRDGYGFLRVEGRKD---DLYLSSEQMKTCIHGDQVLAQPL-GADRKGRREARI 141 KG H G+GF+ E D D+Y+ K + GD+V + K +I Sbjct: 17 KGVFSKHPKGFGFVHPEDATDKTNDIYIGKNDTKFAMDGDKVTVKVTYPKTEKRGASGQI 76 Query: 142 VRVLVPKTSQIVGRYFTEAGV--------GFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 ++ VG Y + + G + + R+S + I + G + VV Sbjct: 77 TKINERAVVDTVGTYRSLSNRQVKALGYKGRIELYNDRISDTLYIKQP-LSGVQEEDVVS 135 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 +++TQ PT GKI ++G G+ + L +IP + + E++ Sbjct: 136 LKITQYPTNTKTFEGKITGIIGHKGEVGLDILEVLCAMKIPQEFSSETLAEAEAFSEKLT 195 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 + R D R+ TIDG+D++D DDA++ +K + L V IADVS+YV + LD Sbjct: 196 DSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYVTEGSSLD 255 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +R TSVY +V+PMLP LSN LCSLN +RL M C M + KG++ YK + Sbjct: 256 EEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLTMSCLMEIDDKGKIVSYKISPS 315 Query: 374 VMSSHARLTYTKVWHILQ----GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISF 429 V+ + R+TY V ++ G ++ E + + ++ L+++L+ R++RG I F Sbjct: 316 VIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIKVAVELHEILETMRKDRGMIEF 375 Query: 430 ESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKP 489 + EAK I + + I + R+ A ++IE M++AN + A +K K P+L+R+HD P Sbjct: 376 DESEAKIILDEKGHPIEIVKRDRDTAERMIESFMLMANETVALDFQKKKLPSLYRVHDNP 435 Query: 490 STEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD 549 ++ A G L N + + + + L L +M A+Y Sbjct: 436 KEKSFAKLMEAAANAGFSL---NSDSHQAINFFADEIKGTSSEKALTYQLRHTMSTAVYS 492 Query: 550 PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEM 609 +N HFGLA +Y HFTSPIRRYPDL +HR + + H + E + Sbjct: 493 EKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNHTKDE--------WKERL 544 Query: 610 LQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFID 669 ++ H S E RA R + K ++M +++G V+ G I+ + FG FV LD+ ++ Sbjct: 545 PEIASHSSDMEHRAVVTERIIDAMKKAEYMSERIGEVYTGTITGLQKFGIFVALDNT-VE 603 Query: 670 GLVHVSSL---DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 GL+ V +L + FD+ G+ S Y++G +++RV A N + +DF I+ Sbjct: 604 GLIRVPNLHTGTTEELEFDEEASIFKGKKSETVYQIGQEIKIRVIAANKRKGTVDFEQIA 663 Query: 727 SE 728 E Sbjct: 664 PE 665 >UniRef50_Q6KI25 Vacb-like ribonuclease II n=2 Tax=cellular organisms RepID=Q6KI25_MYCMO Length = 708 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 214/713 (30%), Positives = 363/713 (50%), Gaps = 25/713 (3%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 ++E +L L + K S E+ ++ + + + L + + G++ R Y +P Sbjct: 3 NKEKVLSLLKE--KKYSFIEIVQKIEVPKFKNKD-FSNFLFDLVKSGEIFKDRDNNYYMP 59 Query: 80 ERLDLVKGTVIGHRDGYGFLRVEGRKDD-LYLSSEQMKTCIHGDQVLAQPLGAD---RKG 135 + L GT+ + G+GF+ E K D +++S + +GD V + K Sbjct: 60 KFLGEFNGTISINSKGFGFVDFEDDKKDSVFVSKFNLNGSFNGDLVSVKSYCESNEAEKQ 119 Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 + I +++ T +VG F E G D + + + D + + ++ V Sbjct: 120 KCFGVISKIIKRNTQYLVGWSFLENGKMKFKAFDEKYNVTQFLFLDNVTNLKENTLIKVR 179 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP-- 253 + + + + +IV+ +G V + + +I + + + A + + + Sbjct: 180 IVEFNKMSS--IVQIVKTIGHLNNPYDEVALVIEESDIVTEFNENTLIESANIPQSISRE 237 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 +E R D R+ +VTIDG+D +DFDDA+ EK +G + L V IADVSYYV+ ++P+D Sbjct: 238 KEEINNRRDYREKLIVTIDGDDTKDFDDAILVEK-KGDNFILSVHIADVSYYVKENSPID 296 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA +RGTS+Y +VIPMLPE LSNG+CSLNP VDR M EM + KGR + + + Sbjct: 297 LEALSRGTSIYLADRVIPMLPESLSNGICSLNPNVDRFTMGIEMEIDEKGRTIRSEIFPS 356 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +++S RLTY +V ++ + L + L L +L K + G + FE EE Sbjct: 357 IINSKKRLTYKEVNRF-YNNEISFDDVPNLNEMLNTSLELSNILQKFKIADGYVDFEIEE 415 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + R+ERI+ +R + LIE M+ AN A F+ K K P L+RIH+KP Sbjct: 416 PKVILDKDGRVERIDVRERGLSEVLIENFMVRANEEVATFLAKNKIPTLYRIHEKPDNLK 475 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I+ ++ L + + + +++ L + D+ ++ ++LRSM++A Y P N Sbjct: 476 ISKLNGIIKTLNINAFFQSGNDSLKFSKTLNKLKDQRFDNFIKILILRSMQKAKYSPNNV 535 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGL + Y HFTSPIRRYPDL HR I+ ++ K Q + ++ + ++G Sbjct: 536 GHFGLGSKFYLHFTSPIRRYPDLLTHRIIREIIFKNQKDKISSFN--------AILKRIG 587 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 + S +E +A E R+V D K +F ++G F G++ S+ FGFFV ++ +D L+H Sbjct: 588 EMNSESENKAVELERNVIDIKKAEFYESKIGKNFVGIVVSILPFGFFVEFEN-KVDVLIH 646 Query: 674 VSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ D Y+ ++ G +++ + +T +GD+V V + N RKID L Sbjct: 647 KDNI-VDAYKINEEGTKIILKD--KTILIGDQVNVTIIGTNRLARKIDAILTE 696 >UniRef50_C6XL74 Ribonuclease R n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XL74_HIRBI Length = 758 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 233/779 (29%), Positives = 367/779 (47%), Gaps = 51/779 (6%) Query: 20 SREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALP 79 + + +LE L + +++ E+A L ++G +++ LR+ L+ +E +G + T ++ ++ Sbjct: 5 TEKAVLEFLERNPDKSNKREIARGLGVQGSDRV-ALRQILKKLETEGTIARTGKRQFSSV 63 Query: 80 ERLDL--------------VKGTVIGHRDGYG----FLRVEGRKDDLYLSSEQMKTCIHG 121 + + G +G YG + GRK E + G Sbjct: 64 DAPPPTSIIKFEKLDEHGDLVGRCVGRDGLYGPEITCVATGGRKK-----GESLGI---G 115 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTS-QIVGRYFTEAGVGFVVPDDSRLSFDILIPP 180 D+ L + G A++++ + T+ ++G + G V P + + L+ Sbjct: 116 DKALCKV-GKANDSLWYAKVIKKIENTTTSTVIGLFEANKHGGRVKPTSRKDKNEYLVEK 174 Query: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 A G +V + L + + ++VE++G A IAL TH++P +P Sbjct: 175 ILSKDAETGDIVRISLKK-SKPYGPQMAEVVEIVGRMENPKSASLIALHTHDVPDEFPVE 233 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKR----GGGWRLW 296 + + + K R DL D+PL+TID DARD DDAV+ GGW ++ Sbjct: 234 IIAEAENATAQ-----KTAREDLTDIPLITIDPADARDHDDAVFARPDEDEGNNGGWIVY 288 Query: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356 VAIADV+ YV+ T LD EA RG S YFP +V PMLPE LS CSL R E Sbjct: 289 VAIADVAAYVQHGTALDDEAYKRGNSTYFPDRVAPMLPEALSAEQCSLKENELRETFAVE 348 Query: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKV 416 M S+ G G++F M S A+L+Y + + G D + L L+ L Y+ Sbjct: 349 MRFSANGNKIGHRFIRGTMRSAAKLSYEQAQAAIDGKPDDK-AGPLLETVLKPLWAAYEC 407 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 + KAR R + + E + + + + + R DAHKLIEE MI AN+ AA +EK Sbjct: 408 VGKARTRRQPLELDLPERRVTLDKDGTVLGVFTKDRFDAHKLIEEFMIQANVCAAESLEK 467 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 A P ++R+HD+PS E I + L +G++ G K + +LL ++ Sbjct: 468 ANSPLIYRVHDEPSDEKILALGFFLPTIGMKWARGAKKTAERFNDLLAQARRTEHEHLVS 527 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M+LRS QA Y PEN GHFGL L YAHFTSPIRRY DL +HRA+ L+ + Sbjct: 528 EMVLRSQSQARYAPENFGHFGLNLAKYAHFTSPIRRYSDLIVHRALIRALSLGPDGLSDV 587 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + + ++ +H + ERR+ A RD D FM ++VG F+G I+ VT Sbjct: 588 ES--------KRLEEIAEHLTTTERRSMAAERDATDRYLVAFMSEKVGAEFQGRIAGVTK 639 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMD 716 G FV+LDD DG + + L ++Y+ +D+ L+ E S + Y +G V V++E Sbjct: 640 AGMFVKLDDSGADGFIPAARLSDEYWLYDEHNAALVAEGSEKRYEMGMPVLVKLEEATPL 699 Query: 717 ERKIDFS-LISSERAPRNVGKTAREKAKK--GDAGKKGGKRRQVGKKVNFEPDSAFRGE 772 + F L A ++ K RE+ + G KG K+R + + + + Sbjct: 700 TGGLLFEMLSEPREAREDLVKPKRERRGRNHPPRGNKGSKKRPSNRSARSNGSRSGKKK 758 >UniRef50_Q297C3 GA19573 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q297C3_DROPS Length = 978 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 159/719 (22%), Positives = 277/719 (38%), Gaps = 90/719 (12%) Query: 82 LDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSEQ-MKTCIHGDQVLAQPLGADR----- 133 L++G R+ Y G + VE + + + + + + GD V + L Sbjct: 248 KKLLQGAFQASRENYLEGSVNVETYEKGILIQGRECLNRAVDGDLVAVELLPESEWSAPS 307 Query: 134 ---------------------------------------KGRREARIVRVLVPKTSQIVG 154 + RIV ++ K Q G Sbjct: 308 EIVLEEKNVYADDVPSEERAEEEKDMLKQVQQAAAAASAERTPTGRIVGIVRRKWRQYCG 367 Query: 155 RYFT----EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKI 210 VP D ++ I I Q + ++V + P G Sbjct: 368 ILQPSLIENTNRHIFVPADRKIPR-IRIETRQAAKLQ-NQRIIVTIDTWPRNSRYPQGHF 425 Query: 211 VEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLV 269 V LG ++ L H++P+ + + V + L + E A RVDLR+L + Sbjct: 426 VRSLGPLGDMATENEVILLEHDVPHCKFSEKVLSFLPKLPWSITAEDYAKRVDLRELDIC 485 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 ++D D DDA++C + G + + V IADVS+++RP LD+EA RGT+VY + Sbjct: 486 SVDPPGCTDIDDALHCRELPNGNFEVGVHIADVSHFIRPGNALDKEAAARGTTVYLVGKR 545 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 I M+PE+LS+ LCSL V+R C V + + +F+++V+ S +TY + + Sbjct: 546 IDMVPELLSSNLCSLVGGVERFAFSCVWEVDKEANVIDKRFHKSVIKSKRAMTYEEAQVL 605 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIE 448 + D Q + + K L L+ L K+L K R + G + S E +F ++E +E Sbjct: 606 I----DDATQQSEIAKSLRHLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEPLEVE 661 Query: 449 QTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 Q + + ++EE M+LANI+ A + + E A+ R H KP G + Sbjct: 662 AKQMRETNSMVEEFMLLANITVAEHIAAEFTECAVLRRHPKPPPTNFDPLVKAARYQGFQ 721 Query: 508 LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQ 561 + + + M++ + R M QA+Y E H+GLA Sbjct: 722 VDTETGLVLSHSLDKCVKEDNPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYGLAAP 781 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRY D+ +HR + + + + +L + + + Sbjct: 782 IYTHFTSPIRRYSDIMVHRLLAASIGADSTYAQLLERKSN--------EELCHNLNYRHK 833 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 A A R F + + +G + V V + ++G +++ + + Sbjct: 834 MAQYAARASVGLNTHLFFRGKEEDE-EGYVLFVRKNALQVLIPKYGLEGTLYLKTDKDGK 892 Query: 682 -----------YRFDQVGQRLMGESSGQTYRLGDRVEVRVE--AVNMDERKIDFSLISS 727 + F++ + D V VR+ + N+ K+ F L+ Sbjct: 893 DGVERTKSEVIFTFNEEDH--TQRCGNVVFHSFDPVSVRLSLDSSNVQHEKLVFRLVKP 949 >UniRef50_A4EAC1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4EAC1_9ACTN Length = 711 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 223/705 (31%), Positives = 326/705 (46%), Gaps = 53/705 (7%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 +R ER + G V H ++ E D + + + GD V Sbjct: 11 ARNKRGP-VRSERRPSLTGRVQLHEHS-AYVITENG--DYKVMGRGKREIMDGDTVAVSI 66 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGAR- 187 + RR A I V+ +VG Y T +G + P DSRL D I P+ R Sbjct: 67 KNSPHGERR-AVIEGVVERAAISVVGTYQTAGPLGVIEPLDSRLKADFFILPEDTSADRL 125 Query: 188 ---MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 G VV + PTR I +G + + V + + +P+A + Sbjct: 126 GVHPGDAVVARILTYPTRLESGAVTIERRIGGDDAPDLGVQYVMARYGYTDSYPEAALDE 185 Query: 245 VAGLKEEVPEEAKAG-RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 GL +V K R DLRD ++TID DARDFDDAV E+ GG+RL V IADVS Sbjct: 186 AEGLSLDVSAALKDPLRRDLRDRFVITIDPVDARDFDDAVSLERTPEGGYRLGVHIADVS 245 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +YV +D EAR+R TSVY +V+PMLPE LSN LCSL P DRL ++ + ++G Sbjct: 246 HYVAWDGHIDLEARHRTTSVYLADRVLPMLPERLSNDLCSLRPDEDRLAFTVDIELDAQG 305 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHI---------------------------------L 390 R+ Y Y +V+ S R+ Y + L Sbjct: 306 RVRHYDPYPSVIRSRVRMDYDGAEALLVRAGAVEYSVLEGAAEDVAAAEASREEALERGL 365 Query: 391 QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT 450 ++ R L L + L ++ + R RG + F++ E + + + + +I Sbjct: 366 ACEEAARGYNVDLGDFLVAANELAELRRRIRRARGSVDFDTAEIRALLDEDGVPVQIVAR 425 Query: 451 QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL---- 506 +R+ A LIEE M+LAN A ++ A +R+H+ PS +++ LA+LG+ Sbjct: 426 ERSCATSLIEEAMLLANECVAEWLADRDIEACYRVHEDPSPDSLHGAAVALAQLGIIDDR 485 Query: 507 ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 G P + +++ A +A ++ T+LLRSM++A+Y P N GHF LA Y HF Sbjct: 486 RAAGIALGSPDELQAAVDAAAGTANAPLVNTLLLRSMQRALYKPRNEGHFALAAPCYCHF 545 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGH------QGNTTETGGYHYSMEEMLQLGQHCSMAE 620 TSPIRRYPDL +HR +K LA EQ + G + Q+ + CS AE Sbjct: 546 TSPIRRYPDLVVHRVLKLQLAYEQLGGKDALVRTPRLIGKGRESLPRILPQICRACSDAE 605 Query: 621 RRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 R AD A+ + D++G + G +S V+ G FVRLD ++GLV + SL N+ Sbjct: 606 RAADAASHATQKIKIAQYYEDRLGERYAGTVSWVSSMGLFVRLDLTQVEGLVSIKSLGNE 665 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 ++ FD+ L G +G Y LG RV + V VN +DF LI Sbjct: 666 WFEFDEDALTLTGADTGTRYELGQRVIIEVSRVNTTRGHLDFKLI 710 >UniRef50_Q16PB6 Mitotic control protein dis3 n=3 Tax=Eukaryota RepID=Q16PB6_AEDAE Length = 970 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 161/734 (21%), Positives = 287/734 (39%), Gaps = 80/734 (10%) Query: 79 PERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG 135 ++ +L++G RD + G +RVE ++ + + + + GD V + L Sbjct: 237 IKKGELLQGAFFASRDNFLEGNVRVESIEEPVLIQGRLNLNRAVDGDVVAIKLLPKSEWK 296 Query: 136 RREARI---------------------------------VRVLVPKTSQIVGRYFTEA-- 160 + V ++ K Q G Sbjct: 297 CPSGVVLVDEQAVDNEAVETADPEFEQEDGADRVPTATVVGIIKRKWRQYCGILAANPMA 356 Query: 161 --GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM 218 + D + I I Q + +VV + P +G V LG Sbjct: 357 SSTRHLFIASDRNIPR-IRIETRQSAQL-ITQKIVVAIDYWPRHSKYPIGHFVRALGGIG 414 Query: 219 GTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 ++ L H++P+ + ++ Q+ L V E RVDLRD+ + ++D Sbjct: 415 EKDTENEVILLEHDVPHGSFSAEIQSQLPKLPWTVDPEEYRKRVDLRDITICSVDPPGCT 474 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA++ + G + V IADV+++++P TPLD+EA R T+VY + I M+P+VL Sbjct: 475 DIDDALHARRLDNGNIEVGVHIADVTHFIKPGTPLDKEAGLRATTVYLVDKRIDMVPDVL 534 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR 397 S+ LCSL +RL C + + KF+++V+ S A LTY + I+ Sbjct: 535 SSNLCSLRGGEERLAFSCIWELDDGANIINTKFHKSVIKSKAALTYQEAQLIIDDPTQTN 594 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAH 456 + + L L+ L K+L + R + G + S E +F ++E + + D + Sbjct: 595 QT----AQSLRLLNKLAKILKRRRIDNGALVLASPEIRFNIDSETHDPIDVVAKKLLDTN 650 Query: 457 KLIEECMILAN-ISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 ++EE M+LAN AA+ + E A+ R H P + + G ++ Sbjct: 651 SMVEEFMLLANVSVAAKIQSEFPECAMLRRHPCPPDANFDPLKKAASYQGFQIDTSCGKN 710 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSP 569 +L + +L+ + R M QA+Y + H+GLA Y HFTSP Sbjct: 711 LATSLDLAVKPDNPYFNTLLRILATRCMMQAVYFISGTIQQQEYFHYGLASPIYTHFTSP 770 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRY D+ +HR + + + + + QL + + R A A R Sbjct: 771 IRRYADVIVHRLLAACIGADATYPALLDKQAS--------SQLCNNLNYRNRMAQYAGRA 822 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY-------Y 682 F D+ + +G I V V + ++G ++V+ +N+ + Sbjct: 823 SVALHTHLFFRDRTEDE-EGYILFVKKNAIQVIIPKYGLEGTIYVAGKNNEKLKKDGPSF 881 Query: 683 RFDQVGQRLMGESSGQTYRLGDRVEVRVE--AVNMDERKIDFSLISSERA-----PRNVG 735 +++ Q + D + VR+ + N+ +++ F L++ P G Sbjct: 882 VYNEETQ--TQSCGDVEFHAFDPITVRLSLDSTNVQHQRLVFELVTPYIEGFSVPPLESG 939 Query: 736 KTAREKAKKGDAGK 749 T AK+ Sbjct: 940 STNGAAAKRKGEEA 953 >UniRef50_C7N4W7 VacB/RNase II-like 3'-5' exoribonuclease n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4W7_SLAHD Length = 670 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 210/666 (31%), Positives = 320/666 (48%), Gaps = 39/666 (5%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKG--------RR 137 +G + GY F++ + ++ + ++ GD V L + +G R Sbjct: 7 RGVLNMTSAGYAFVQTAEGE--FFIPASKVHDAFDGDVVEVSRLSSSERGSYAQAGPDRP 64 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 AR+VRV++ IVGRY G VVP+D R+ DI + G +V V +T Sbjct: 65 AARVVRVVLRAHESIVGRYEVAEPFGIVVPEDPRIKHDIFTLRADAPHVQHGDIVRVRMT 124 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ-VAGLKEEVPEEA 256 P RR A G + EVLG GM V++ + H++ + V + E + Sbjct: 125 VYPNRREPAQGVVEEVLGHVGDAGMDVELIVARHKLETKFSPKVLEDVAHAAVGEAEALS 184 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 D+R+ + TID DA+DFDDA+ +K GG RL V IADVS+YV ++P D EA Sbjct: 185 SGDYRDIRNRVVFTIDPADAKDFDDALSFDKV-GGYLRLGVHIADVSHYVPWNSPTDLEA 243 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMS 376 R R TSVY +V+PMLPEVLSN +CSL P+ R M ++ ++ + Y +++ Sbjct: 244 RRRSTSVYLVDRVVPMLPEVLSNDVCSLRPREPRRAMTVDLYLTETFSVHHVDAYPSIIE 303 Query: 377 SHARLTYTKVWHILQGD------------QDLREQYAPLVKHLEELHNLYKVLDKAREER 424 S ARL Y V QD+ + ++ L L + L + R +R Sbjct: 304 SCARLDYDTVQECFDRVAGGERPAAVSMLQDVCKDPESVLVRLLGLKRVSVGLHERRLKR 363 Query: 425 GGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFR 484 GG+ F+ EAK + E R ++ + A L+EE MI AN + AR + P+++R Sbjct: 364 GGLDFDGVEAKVRLDDEGRPVGVDIRKTTQATSLVEEAMIAANEAVARLLRDGAIPSIYR 423 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNK----PEPRDYAELLESVADRPDAEMLQTMLL 540 +H+ P+T +++ +L E G + +P +++ R + ++ T+++ Sbjct: 424 VHEPPATGDLSALIPILQEFGYDSDVSMSRFAAGDPFAIQKVIAKAKGRLEEPLVSTLVV 483 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG 600 R+M QA Y HFGL ++Y HFTSPIRRYPDL +HR +K L Sbjct: 484 RAMTQARYVDACEPHFGLGSEAYTHFTSPIRRYPDLVVHRMLKVKLFGRTETTSAEEAAL 543 Query: 601 GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 + S ER+A+ A R+ + + + + +G F G++S VT GFF Sbjct: 544 ATIAAHA---------SEMERKAETAARESQELKLFELLEEHIGEEFDGLVSGVTASGFF 594 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRLDD +G V + +Y+ D L G SG YRLG RV +RV V ERK Sbjct: 595 VRLDDT-SEGFVSLR-RAQEYFILDPERYTLTGSDSGVVYRLGARVRIRVRDVYPFERKA 652 Query: 721 DFSLIS 726 DF L++ Sbjct: 653 DFDLVA 658 >UniRef50_A3VTQ9 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTQ9_9PROT Length = 830 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 252/805 (31%), Positives = 375/805 (46%), Gaps = 40/805 (4%) Query: 19 PSREFILEHLTKREKP----ASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQ 74 PS IL +L KRE+ ++ +LA ++ + R L + +G++ R+ Sbjct: 5 PSDSDILSYLRKREEQGEEAPTQRDLADVFSVKNAGRR-QFRATLADLRDEGRIAVENRR 63 Query: 75 CYALPERLDLVKGTVIGHRDGYGFLRVE------GRKDDLYLSSEQMKTCIH----GDQV 124 L V + D G L E + L S Q GD+ Sbjct: 64 ILLKGGPLPPVVVLDVIDTDSDGDLICEVISAEAPAGTSVVLPSTQAGKVKPPIGTGDRF 123 Query: 125 LAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 L + A A ++ + ++ +G Y G V P + + I Sbjct: 124 LGRLT-ALEDFHYHAAPIKRIGRGATRTLGVYRPHRRGGHVDPVSRKA-QSLDIDSRDAN 181 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQ 244 A G +V E G+IV + G IAL +IP +P V + Sbjct: 182 NAEEGDLVWAEPLN-ARGYGPRKGRIVSIEGHVDDRTNWSLIALAEQDIPIHFPPEVVEA 240 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 L + DLR LPL+TID ++A+D DDAV+ E G +R+ VAIADV+ Sbjct: 241 AEALTL---PSDLSPYEDLRALPLITIDPKEAKDHDDAVFAEPIDEG-FRIVVAIADVAQ 296 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YVRP +PLD+EA+ RG SVY +V+PMLPE LSNGLCSL DR + CE+ + G Sbjct: 297 YVRPGSPLDQEAKRRGNSVYLIDRVVPMLPEALSNGLCSLKAGEDRTALCCELIIGPNGG 356 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKAREE 423 ++F+ A+++ H L Y + D L ++ L ++ L ++ L+ AR + Sbjct: 357 RKRHRFFRALINCHRGLAYEEAQAA--ADGRLTDRTRDLKDSVIDPLWAAWQALETARRK 414 Query: 424 RGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALF 483 + + E + + + ++RI + QR DAH+LIE M+ AN+ AA +E A ++ Sbjct: 415 SPSLDLDMPERQILLAEDGAVDRIVRKQRLDAHRLIEAYMVTANVCAAETLESANRALIY 474 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 R+HD P E I R L+ +G LP G +P + +L + D+ + +++ +LR+ Sbjct: 475 RVHDVPDEERIDGLRVYLSSMGYSLPKGQVLKPAKFNHILRAARDKDETDLVALAVLRTQ 534 Query: 544 KQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYH 603 QAIY EN GHFGL+L+ YAHFTSPIRRY DLT+HRA+ G G Sbjct: 535 MQAIYSTENLGHFGLSLRRYAHFTSPIRRYADLTIHRALVSARRLGPG--------GMRA 586 Query: 604 YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRL 663 + + +H S+ ERRA A R D F+ D+ GN F G IS VT G FV L Sbjct: 587 EDEAHLADVAEHISVTERRAVAAERATQDRYLASFLEDREGNDFHGRISGVTRAGLFVTL 646 Query: 664 DDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 D+ DG + + SL DYY+ D+ L+G+ SG Y LG RVEVR+ V + + F Sbjct: 647 DETGADGFIPMRSLHTDYYQHDEERNALIGQRSGGHYHLGQRVEVRLLEVTPLQGGLRFE 706 Query: 724 LISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKD 783 ++SS A + + G G R + G+K RG + PK+A +D Sbjct: 707 MLSSPEAVETAPAASSAEKAAKKRGATDGARGRPGQKP-RGAKRGKRGAEDRPPKSAAQD 765 Query: 784 ARKAKKPSAKTQKIAAATKAKRAAK 808 A + K A AT ++A K Sbjct: 766 K------PASSAKRAPATPPRKATK 784 >UniRef50_D1HK82 Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) n=11 Tax=Embryophyta RepID=D1HK82_VITVI Length = 937 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 157/712 (22%), Positives = 268/712 (37%), Gaps = 88/712 (12%) Query: 86 KGTVIGHRDG--YGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG------- 135 +G + +R ++ E D++ + M GD V + L D+ Sbjct: 238 QGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSI 297 Query: 136 ----------------------------------------RREARIVRVLVPKTSQIVGR 155 R R+V ++ G Sbjct: 298 ADEEDEEEEDVHLVPSSADDAPRNTDLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGS 357 Query: 156 YFT------EAG--VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 G V D R+ I I Q+ + ++V + Sbjct: 358 LEPMPMPAGNGGIAHALFVSKDRRIP-KIRIQTRQLGNL-LDKRIIVAVDSWDCLSRYPS 415 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAG--RVDLR 264 G V +G+ ++ L ++I + V + L V E A R+DLR Sbjct: 416 GHYVRTIGEIGDRDTESEVVLIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLR 475 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 + + ++D +D DDA++C G + + V IADV+ +V P TPLD EA RGTSVY Sbjct: 476 HVCVFSVDPPGCKDIDDALHCTTLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVY 535 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 + I MLP+ L+ +CSL V+RL ++ + + K+ ++++ S A L+Y Sbjct: 536 LVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPQAEIISTKYTKSIIKSCAALSYI 595 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR- 443 + D PL L ++ L KV+ R ERG ++ S E KF + E Sbjct: 596 EAQA----RMDDSRLMDPLTMDLRNMNALAKVMRLRRIERGALTLASAEVKFQIDTETHD 651 Query: 444 IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I Q +A++++EE M+ AN+S A ++ +L R H P+ E + A Sbjct: 652 PLDIGMYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTREMLEPLLRTAA 711 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHF 556 +GL L + D + D ++++ + R M QA+Y P H+ Sbjct: 712 AVGLNLDVSSSKALADSLDH-AVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFHHY 770 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA Y HFTSPIRRY D+ +HR + L + ++ + Sbjct: 771 GLAAPLYTHFTSPIRRYADVIVHRLLAASLG--------LYKLPTIFQDNAQLTSTADNL 822 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS- 675 + R A A R + + + + + I + GF V + I+G V+++ Sbjct: 823 NYRHRNAQMAGRASVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKYGIEGPVYLTP 881 Query: 676 --SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + D+ Q++ +Y + V + +E V + L Sbjct: 882 RGEKGGGEWVVDEQQQKVKKMDGSISYSVLQTVMIHMEVVEPQPNRPKLELA 933 >UniRef50_B3T7C1 Putative RNB-like protein n=1 Tax=uncultured marine microorganism HF4000_APKG3D20 RepID=B3T7C1_9ZZZZ Length = 671 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 189/678 (27%), Positives = 318/678 (46%), Gaps = 51/678 (7%) Query: 86 KGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRK--------GRR 137 +G ++ R+G F+ + R+ L+ +HGD+V + + ++ GRR Sbjct: 7 RGVLVFRRNGNAFVEIRNRQKSFQLAKAATACALHGDEVEIRQVSPRKRKPGQRKATGRR 66 Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 +V+V+ +G + + P+D RL + + + G V+V+ Sbjct: 67 SYEVVKVVSRSLDHFLGFAQRQGKGWMIRPEDRRLHTNFALSGEMPPNLVDGEKVLVQFV 126 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAK 257 ++ G+I+ VLG L +++P + + VE ++ + +V ++ Sbjct: 127 DWGQPQSLPRGRILRVLGPAGDPMTDHIGILAKYKLPNRFSRKVESELNTIPRQVRQQDL 186 Query: 258 AGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREAR 317 GR DLRD +T+D DARDFDDA+ +GG + V IADVS YV P + +D+EAR Sbjct: 187 KGRKDLRDRFTLTVDPIDARDFDDALSLHPLKGGNVEVGVHIADVSAYVAPESAIDKEAR 246 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RG S Y +V+PMLP+ LSNG+CSL DRL T KG + G+ EAV+ S Sbjct: 247 RRGNSTYLVGEVVPMLPKQLSNGICSLVEAEDRLVKSVLFTFDPKGNVLGHHVTEAVIRS 306 Query: 378 HARLTYTKVWHILQGDQDLRE-------------------------QYAPLVKHLEELHN 412 RLTY + +L + DL + + L L L + Sbjct: 307 DKRLTYEQA-KLLMDESDLSKVRSAKPPESRYSGKPGTTLSKLPDGKLLKLQSTLRNLWS 365 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 L + R G + +E K + + ER+ + +++H+LIEE M+LAN + A+ Sbjct: 366 FADELREQRLRHGALDLGGKEVKILVDDRGNPERMMRLVNDESHQLIEEFMLLANETVAK 425 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA 532 + + + PA+ R+HD P E + RS A G+ G+ + L + + P + Sbjct: 426 ELRRLRRPAIHRVHDDPDPEKLDELRSFAAIFGISC--GDLNHRKAMTALTSKIKNHPIS 483 Query: 533 EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 ++L+ LLRS+++A Y GH+GLA Y HFTSPIRRY DL +HR I+ L + Sbjct: 484 QVLRIKLLRSLRKACYRVSPDGHYGLAKSDYLHFTSPIRRYADLVVHRIIEAQLRGSRTT 543 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV----FK 648 +S ++ ++ H S ER + +A R+ + ++ + Sbjct: 544 A----------HSRGDLEKIAFHVSETERNSVDAERESVKTKLVAYYARELKENNVRPHE 593 Query: 649 GVISSVTGFGFFVRLDDLFIDGLVHVSSLD-NDYYRFDQVGQRLMGESSGQTYRLGDRVE 707 +I+ + GFFV L D G V + +L ++ YR + + +T ++G R++ Sbjct: 594 AIITQIGRRGFFVELTDTLAQGFVALRALPRHEGYRVSANETAITARNPKKTLKIGQRIK 653 Query: 708 VRVEAVNMDERKIDFSLI 725 V ++ V+ DE+ +DF L Sbjct: 654 VMIDRVDQDEKLLDFRLA 671 >UniRef50_Q2JH83 Acetazolamide conferring resistance protein Zam n=2 Tax=Synechococcus RepID=Q2JH83_SYNJB Length = 766 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 200/765 (26%), Positives = 342/765 (44%), Gaps = 48/765 (6%) Query: 17 PIPSREF--ILE-HLTKREKPASRDE-LAVELHIEGEEQLEGLRRRLRAMERDGQLVFTR 72 PIP +F I + L++ + + L L E E L L + R G L Sbjct: 2 PIPKMDFSRIFQHFLSQPPDQLTDKDTLLALLQSPDPEAPEMLEIALDGLVRAGFLERLG 61 Query: 73 RQ-CYALPERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLG 130 Y LV G + G+ F + +D+Y+ + +GDQVLA+ Sbjct: 62 DPPRYRRKPDESLVVGRLRCSSKGFCFAIRDEPGVEDVYIHGSNLSGAWNGDQVLARVTK 121 Query: 131 ADRKGR-REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMG 189 + R E +V V+ S +VGR VVP D RL F++ + + G Sbjct: 122 DGNRRRSPEGEVVAVVERANSALVGRLKQTEQGFRVVPLDDRLLFELALTEGSPVELAEG 181 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLK 249 V VE+ + P G I ++LGD + D+ +++P +P V + A L Sbjct: 182 RVAYVEVNRYPLGDLPPTGTIRKILGDGPEASIDADLVCCKYDLPQEFPAPVLEAAAALP 241 Query: 250 EEVPEEAKAGRVDLRDLPLVTIDGEDAR-----DFDDAVYCEKKRGGGWRLWVAIADVSY 304 +++ + GR DLRD +T++ D + + + AV +++ W L + IADV++ Sbjct: 242 KKLSRSDQKGRRDLRDWFCITLEPLDLQHPHGLEPNVAVSLQRQENDHWLLGIHIADVAH 301 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 ++ P PL++EA+ R +VY + V+P+ P + N L L PQ +RL +T+ +G Sbjct: 302 WLDPDHPLEQEAQQRTATVYLDTMVLPLFPPEVHNRLA-LLPQQERLAYSLLVTLDPEGV 360 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR--EQYAPLVKHLEELHNLYKVLDKARE 422 + ++ Y +++ S A L+Y +V +L DL E+ L+ L+ L L ++L R Sbjct: 361 VQNFEIYPSLVQSRAHLSYGQVQALLATTADLGPDEEVPELMALLQNLLRLSQILRAKRH 420 Query: 423 ERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 + GG + + E + + R AH L+ E ++LAN + + P+ Sbjct: 421 QAGGFDLPLLDLLTPHSADESGYGPLLISDRLGAHALMTEILLLANQILGHHLRQLGIPS 480 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGN--KPEPRDYAELLESVADRPD-----AEM 534 L R+ P+ EA+ SF + + L+L + D+ + + + Sbjct: 481 LARVQPAPAAEALQSFLRLANAMKLDLNLQDPAVVTLADWQRICARITAPDVLASGASPA 540 Query: 535 LQTMLLRSMKQAIYDPEN----RGHFGLAL-QSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589 L +L ++ Y + GHFGL L + YA FT+P+RRY DL RA+ L+K Sbjct: 541 LVAQMLATLPPVEYRLQPLEEQLGHFGLGLKEPYATFTAPLRRYADLLNLRALHLALSKG 600 Query: 590 QGHQGNTTET--------------------GGYHYSMEEMLQLGQHCSMAERRADEATRD 629 + + + ++T + R +A R+ Sbjct: 601 RERRSSRSKTVVDLHGPSGYGQIDWQVLPPKVQEEWQAFLQAQLPKIQEGYRIRQQAERE 660 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQ 689 + + +FM +G VF G+I V +GFFV++D + +GLV VS+L ND+Y + Q Sbjct: 661 LMGLKRSEFMQKHLGEVFPGLIIGVQNYGFFVQVDPILAEGLVRVSTLKNDWYEYRSRQQ 720 Query: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNV 734 L+G S + +RLGDRVEV+++ V+ ++ID ++I R Sbjct: 721 ALVGRKSRRQFRLGDRVEVQIKNVDYYRQQIDLAVIGEGRPYEEE 765 >UniRef50_Q4AAR6 VACB-like ribonuclease II n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4AAR6_MYCHJ Length = 694 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 197/710 (27%), Positives = 343/710 (48%), Gaps = 30/710 (4%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 I S E + L + + + E+ + +I L ++ + + + T Y Sbjct: 3 IISEERLKNFLRQEK---TFIEIVRKFNIPFNLNH-QLTNQISNLIENFVVFKTPEGKYY 58 Query: 78 LPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTCIHGDQVLAQPLGAD-R 133 P+ L G +GF+ + +K+++++ + + GD+V + Sbjct: 59 APKFLKTTSGIFRATNSAFGFVEDKENPIQKNNVFIPGRFTASALEGDEVKINIYADRFK 118 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVV 193 + + +++ ++G+ F P + D L + Sbjct: 119 SDQVFGIVTKIIQRNNKFLIGKAFKNGKYWDFEPVN--FKGDFLFRWNTTDDLINDNYYK 176 Query: 194 VELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP 253 V++ K I++ +G + V I + E+ + V ++ +++E+ Sbjct: 177 VKIIDYQKNTLKIS--IIQKIGHKSEPFLYVKIPIIESEVSNKFSADVLEEAEKIEKEIT 234 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 R DLRD ++TIDGED +DFDDA+ +K G + L V IADV++YV+ +P+D Sbjct: 235 NIE-KNRTDLRDELVITIDGEDTKDFDDAISVKKTNEGNFLLKVHIADVAHYVKQDSPID 293 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA+ RGTS+Y P VIPMLPE LSNG+CSL P VDR + E ++ +G K Y + Sbjct: 294 VEAQRRGTSIYLPHTVIPMLPEELSNGICSLKPNVDRFTITMESLINKRGENLSIKIYPS 353 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V++S RLTY V + G + L K L+ L +L ++ +G I +E Sbjct: 354 VINSKWRLTYKDVNNFFNGKSSFNDT--NLEKMLKTAQELNTILSLFKKNQGYIDLAIDE 411 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + E ++ R + +LIE MI AN + + F+ K K P L+R+H+KP E Sbjct: 412 IKIILDEQGFTESLKLKSRGTSEELIENFMIRANENVSEFLTKRKIPILYRVHNKPDPEK 471 Query: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENR 553 I F +L LG++ R++A ++ + + + L+ +LR+M++AIY EN Sbjct: 472 IMIFNQILKVLGVKNTLKLNSNSREFARKIDEIKTKNNDNFLKYSILRTMQKAIYSTENI 531 Query: 554 GHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLG 613 GHFGLA Y+HFTSPIRRYPDL LHR I++ + + + + + E + + Sbjct: 532 GHFGLAANFYSHFTSPIRRYPDLILHRIIRFFIFE---------KNKNFDFFNEILTKNS 582 Query: 614 QHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVH 673 + E++A R + + K +++ +G F I+S+ GFFV ++ LF D ++ Sbjct: 583 YLTTELEQKAFNLERKIVNIKKTEYVKKLIGQTFNAQITSIIKSGFFVEINGLF-DAMLS 641 Query: 674 VSSLD---NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 SL ND Y+ + G + S + ++LG+ +++++E+VN+ E KI Sbjct: 642 NKSLPNNENDPYQLTEDGFCIYN--SRRRFKLGEFIDIKIESVNVWEGKI 689 >UniRef50_Q4PF93 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PF93_USTMA Length = 1423 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 162/728 (22%), Positives = 269/728 (36%), Gaps = 128/728 (17%) Query: 78 LPERLDLVKGTVIGHRDG--YGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLG---- 130 L +V G + ++ ++ E D+++S + + GD V + L Sbjct: 577 LLAHGKIVVGVLRINKRNRSDAYVTTEVLDSDIFISGSKDRNRALEGDLVAVELLDPLEV 636 Query: 131 ------------------------------------------------ADRKGRREARIV 142 + +V Sbjct: 637 WNVKKEKEDKKKRKEEQSGQFSRKPDKAKDDLEVEGAQLRLIEDEEENEQSPPQLAGHVV 696 Query: 143 RVLVPKTSQ-IVGRY-------------------------------FTEAGVGFVVPDDS 170 ++ Q G + + P D Sbjct: 697 AIVERSPGQLFSGTLGLLRPSSAATKEKQQAERVQREGASALAPEVKPRPKIIWFRPTDK 756 Query: 171 RLSFDILIPPDQIMG---ARMGF------VVVVELTQRPTRRTKAVGKIVEVLGDNMGTG 221 R+ I IP DQ A G + V + + P G +VE +G Sbjct: 757 RVPL-IAIPADQAPEDFWAEEGQESFNSRLFVACIKRWPITSLHPFGALVEEIGVIGNVE 815 Query: 222 MAVDIALRT--HEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDF 279 L+ + + + + L ++PE+ R D R + TID E A+D Sbjct: 816 AETQALLKDTLSSATEAFTEGALKCLPPLPWKIPEKEYKTRRDFRSHRVFTIDPETAKDL 875 Query: 280 DDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSN 339 DDAV+ + G + + V IADVS++V+ + LDREAR RGTSVY + IPMLP LS Sbjct: 876 DDAVHVVRLDNGNFEVGVHIADVSHFVKLGSSLDREARKRGTSVYLVQRAIPMLPPTLSE 935 Query: 340 GLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ 399 LCSL P V+RL T++ ++ F ++++ S A+L Y +++G Q +E+ Sbjct: 936 ELCSLVPNVERLAFSAVFTMNKDAQVISSWFGKSIIKSCAKLAYADAQKVIEGGQLSKEK 995 Query: 400 Y-----APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 + + LH L + + R + G + ++ + F + D Sbjct: 996 LEAHRPKEIGDDILILHQLAQKMRARRFKTGALRIDNVKLSFKLDENGLPTDASVYCSYD 1055 Query: 455 AHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK 513 AH+LIEE M+ AN++ A+ + E AL R H+KP + F +G ++ + Sbjct: 1056 AHRLIEEFMLQANMAVAQQIAAGLPELALLRRHEKPLDRRLDGFLRRAKSMGYDIDTSSG 1115 Query: 514 PEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFT 567 L + D + LQ ++ +SM QA Y D H+ L + Y HFT Sbjct: 1116 G---ALHRSLAKIKDDSARQALQALVTKSMMQAKYFCTGMVDIAKYHHYALNVPLYTHFT 1172 Query: 568 SPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEAT 627 SPIRRY DL +HR ++ +L E + E M ++ Q C++ + A A Sbjct: 1173 SPIRRYADLMVHRQLEAVL----------VEQDKFGVDREAMAKIAQQCNVKKDAAKMAQ 1222 Query: 628 RDVADWLKCDFML----DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYR 683 A C + V + V F V + + I+ VHV + + + Sbjct: 1223 EQSAHLFLCLLIHDLTMRYGPVVRSATVMGVLDAAFDVIVPEFGIEKRVHVDQMPIENHT 1282 Query: 684 FDQVGQRL 691 +D+ L Sbjct: 1283 YDEQTNAL 1290 >UniRef50_A9UUC9 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=A9UUC9_MONBE Length = 951 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 154/704 (21%), Positives = 283/704 (40%), Gaps = 71/704 (10%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD---- 132 + LV+GT+ R+ F++ + + +++ M + GD V Q L Sbjct: 229 KAGKLVQGTLRISRENTQEAFVKPRDDPEHPVFVPGNLMNRAVDGDLVALQILPESQWQT 288 Query: 133 -----------------------------RKGRREARIVRVLVPKTSQIVGRYFTEAGVG 163 + +R ++V ++ + G + Sbjct: 289 PSGIIERPEGTHLVMDGTQDAEGELEDMQERTQRTGQVVGIVRRRWRPYCGILAANSNTA 348 Query: 164 -----FVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM 218 ++ L I Q G +V+ + PT +G +V VLG Sbjct: 349 SPNLFLFTAKEATLP-PIRFRSQQPDKLV-GQQIVLAVDGWPTNSKYPIGHLVRVLGPIG 406 Query: 219 GTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 ++ L H +P+ + +AV + E+ + R DLR L + +ID Sbjct: 407 DVNTETEVVLLEHAVPFEPFSKAVLDCLPDATWLAAEQDLSRREDLRHLEVCSIDPPGCT 466 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA++ G + + V IADVS++++P+T LD+EA RGT+VY ++ I M+P +L Sbjct: 467 DIDDALHLRDLPNGHFEVGVHIADVSHFIKPNTALDQEAAKRGTTVYLSNRRIDMVPGLL 526 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR 397 S+ LCSL +R C ++ + + +F ++++ S A L Y++ + D Sbjct: 527 SSNLCSLRGGEERFAFSCIWEMTDQADIISTRFCKSIIRSRAALEYSEAQARI----DDE 582 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAH 456 L + L+ L K++ + R E G + S E +F + E ++ Q +D + Sbjct: 583 TDQTTLTDSIRRLNALAKIVKRRRIEAGALMLASPEVRFRIDTETHDPVDVQMKQLHDTN 642 Query: 457 KLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPE 515 L+EE M+LAN+S+AR + K A+ R H P G+ L + E Sbjct: 643 SLVEEFMLLANVSSAREIHKQFPTCAVLRRHPAPPPSNFEPLLKAAEAAGVTLSTTSSKE 702 Query: 516 PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYD------PENRGHFGLALQSYAHFTSP 569 ++ + +L+ + R M A Y GH+GLA Y HFTSP Sbjct: 703 LAVSLDMAQPEGQPYMNTLLRILATRCMLPAQYFCSGTVPQTEFGHYGLASPIYTHFTSP 762 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRY DL +HR + + + + + +++ + + + R+A A R Sbjct: 763 IRRYADLLVHRLLAACIGADPTYPD--------LLNKDKIASICDNLNFRNRQAQYAARS 814 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND--YYRFDQV 687 + C F + + + I V V + ++G V+ + D +D+ Sbjct: 815 SLELHTCLFFKKRTTHE-EAYIIRVRKNAIAVLVPAYGLEGRVYFDAADGQAPELSYDEN 873 Query: 688 GQRL--MGESSGQTYRLGDRVE--VRVEAVNMDERKIDFSLISS 727 L + R+ D+V+ V+V++ + ++ L+ Sbjct: 874 KMALTVTKDDQHINLRVFDKVKVQVQVDSSDPQREQMLVRLVEP 917 >UniRef50_B1ZUX4 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZUX4_OPITP Length = 833 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 210/690 (30%), Positives = 316/690 (45%), Gaps = 48/690 (6%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRK--------DDLYLSSEQMKTCIHGDQVLAQP 128 LP D G + G F+ +E + + +E + GD+V+ + Sbjct: 146 RLPLGPDEYIGRIQFRAGGSAFVVLEATGGRPADPSQPPIQVFAEDTDVALPGDRVVVRV 205 Query: 129 LGADRKGRR---EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG 185 R R + RVL +VG VVPDD R +++ + G Sbjct: 206 FAGRRGRRPGEKIGGVERVLERGRDTVVGDLRRRGRDYLVVPDDPRFVYEVAVSDPARSG 265 Query: 186 ARM----GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + G VVV+L R G+I LG + + + + +P V Sbjct: 266 VKPAPQPGDKVVVKLHAWNRRHDPLTGEIESRLGRTHEPQAELLAIFQKYNLVTTFPADV 325 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 E++ A L + V AGR+D R+ P+ TID +DA+DFDDA+ E GG R+ + IAD Sbjct: 326 EREAATLPDRVHPRELAGRLDYREQPVFTIDPDDAKDFDDALSYEPLHGGDVRVGIHIAD 385 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS YVRP T LDREA+ RG S Y VIPMLPE LSNGLCSL DRLC +T + Sbjct: 386 VSTYVRPGTALDREAQRRGNSTYLVGTVIPMLPEKLSNGLCSLVEGQDRLCKAVFLTFAK 445 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR------------------------ 397 GRL F + S RLTY + + ++ R Sbjct: 446 NGRLKETTFANTAIRSRKRLTYKQAYALMFEHDLDRIRALPLPPKHQTGSTGRALSALSD 505 Query: 398 EQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHK 457 + L + L + L R G + + E K + + +R+E+ + +++H+ Sbjct: 506 AELVDLQSWVRALWKIASRLRHDRMAHGSLDLDMPETKIFVDEQGYADRLEKIEHDESHQ 565 Query: 458 LIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR 517 LIEE M+ AN + AR P+L+R+HD+P + + +R +LA + G+ Sbjct: 566 LIEEFMLAANEALARLTRTHSLPSLYRVHDEPDPDKLDEYRQLLATFDIH--TGDLTRRE 623 Query: 518 DYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLT 577 + +L+ +++ P L+T LLRS+++A Y GHFGL + Y HFTSPIRRY DL Sbjct: 624 ELVKLIRTLSTHPQGYTLRTQLLRSLRKAAYRATADGHFGLNKKDYTHFTSPIRRYADLV 683 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 +HR + L K HQG G Y++ + LG+H S+ E + EA R+ + Sbjct: 684 VHRVFDFYLVK---HQGGRPAHGHTSYNLGHVESLGEHLSLTEINSAEAERESVKVKLLE 740 Query: 638 FMLDQVGNV----FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMG 693 F ++ F V++ V GFFV L + G V +L +D+Y + G G Sbjct: 741 FFERELAKKKKTPFAAVVTDVRQNGFFVELVESMTFGFVPTHTLSDDHYVLNNAGTMFTG 800 Query: 694 ESSGQTYRLGDRVEVRVEAVNMDERKIDFS 723 + + + DR+EV VE V+ +R IDF Sbjct: 801 RRHKRRFAVNDRIEVVVEKVDRYKRLIDFR 830 >UniRef50_B0EIJ5 Exosome complex exonuclease RRP44, putative n=2 Tax=Entamoeba RepID=B0EIJ5_ENTDI Length = 901 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 155/706 (21%), Positives = 276/706 (39%), Gaps = 68/706 (9%) Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSS-EQMKTCIHGDQVLAQP 128 T+ + L LV+G+V +R + V K+++ +S E + + GD V Q Sbjct: 214 TKEEITRLISEKKLVQGSVRMNRFNFKEATVYTTEKEEILVSGLEDINRAVEGDIVALQI 273 Query: 129 LGADR-------------------------------KGRREARIVRVLVPKTSQIVGRYF 157 L D+ +G+ +IV ++ + G Sbjct: 274 LPKDQWKKESNTINDDYEKNEKEMNNTVHMENAMEVEGKPTGKIVGIIKRNWKPLPGYIK 333 Query: 158 TEAGVGF-----VVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVE 212 E+ + +P D R I I ++V + T G V Sbjct: 334 QESSGNYSTNLLFLPTDKRFP-PIRIKARDPAKLAS-QRILVLIDAWDTTSKYPTGHYVA 391 Query: 213 VLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 LG+ + L HEIP+ +P+ V + + L E+ ++ GR D R + +I Sbjct: 392 TLGNVGDKASETEAILELHEIPHYEFPEIVLKCLPLLPFEITDDYLKGRYDFRKENVCSI 451 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 D D DDA++C+ G + + V IADVS +V+P T LD EA RGT+VY + I Sbjct: 452 DPPGCTDIDDALHCKILPNGNYEIGVHIADVSCFVKPHTALDEEAAKRGTTVYLADRRID 511 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLP+ L+ +CS+ D L + + +++ ++ S+ Y + ++ Sbjct: 512 MLPKPLTEVICSITQNTDTLTFSVVWELDKNANVINCTYHKGIVHSYRAYAYGQAQAVID 571 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 + E + L + L K L + R + G + S E K + + +++ Q Sbjct: 572 DKSNQSE----YAQQLRVMLMLSKKLKQKRIDAGALMLASSEIKIEKDEQFNPIGVKEYQ 627 Query: 452 RNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 + + ++EE M+LAN+ A+ + A+ R H P +VL G L Sbjct: 628 TYETNSMVEEYMLLANVWVAKKIYDAFPHCAMLRRHPPPDEHTFEWLANVLKHKGKSLDF 687 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYA 564 + + + + D +++ ++ R M+QA Y H+GLA + Y Sbjct: 688 SSSKALSESLDKCGTNEDPVVGRIMRILVTRCMQQAKYFSSGYFSYNEFRHYGLAAEIYT 747 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRY D+ +HR + + +Q S E+M ++ + + A Sbjct: 748 HFTSPIRRYADVMVHRLLAQAIGFDQIDLT---------MSKEKMKEIADNINHRHTMAQ 798 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 A R F+ D+ G + V G V + ++ +V + F Sbjct: 799 HAGRASTQMYTLIFLKDK-EVTVDGYVIKVMKNGIVVNIPQYGLEVIVLIDQKYG--MVF 855 Query: 685 DQVGQRLMGESSGQTYRLGDRVE--VRVEAVNMDERKIDFSLISSE 728 D+ L + + + DRV+ + ++ N + K L Sbjct: 856 DENENTLGNMNIK--FGVFDRVKGVLSIDKSNEFQLKPILRLTQPH 899 >UniRef50_Q17632 Probable exosome complex exonuclease RRP44 n=3 Tax=Caenorhabditis RepID=RRP44_CAEEL Length = 961 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 170/785 (21%), Positives = 306/785 (38%), Gaps = 94/785 (11%) Query: 8 EREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQ 67 +R Y + + +E+I ++L K A D++A + + L Sbjct: 187 KRMENHYQHVMYLKEYI-QNLEDPGKQALLDQMAAYESSGNGNEKQIFDEYL-------- 237 Query: 68 LVFTRRQCYALPERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSEQMKTCIHGDQVL 125 + + + +G R+ Y + ++ + +++ ++GD V Sbjct: 238 ---SHDRIMEGIASGTIKRGNFSVSRENYREATVIIDDQLTSWFITGNNCNRAVNGDTVA 294 Query: 126 AQPLGADRKGRRE--------------------------------------------ARI 141 Q L D+ E A++ Sbjct: 295 VQLLPEDQWTAPEKKIRLRDVEEYVKTADDMGNEDEENDDENDEPKAKKSKKMTVSTAKV 354 Query: 142 VRVLVPKTSQIVGRY----FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 V ++ + G A P + + I I +Q +VV + Sbjct: 355 VGIIKRNWREYCGMLLPSTVKGARRHLFCPAERLIPR-IRIETEQAETLSQ-QRIVVAID 412 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEA 256 P +G V +G+ ++ L H+IP+ + ++V + + E Sbjct: 413 HWPRDSKYPLGHYVRSIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPDLTE 472 Query: 257 KAG---RVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 G RVDLRDL + ++D D DDA++C++ + + V IADV+++VRP T +D Sbjct: 473 NRGPLPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAID 532 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA RGT+VY + I MLP +LS+ LCSL + +R C T++S + K++++ Sbjct: 533 DEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQSVKYHKS 592 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 ++ S A LTY K I+ D ++ + L L L KVL+ R G ++ S E Sbjct: 593 LIKSKAALTYEKAQEII----DDPKEQNDVALGLRGLMKLSKVLNARRTGNGALTLASSE 648 Query: 434 AKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPST 491 +F + E R +++ + Q D H ++EE M+LANIS A +E+ + AL R H P Sbjct: 649 VRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLK 708 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 E+ G E+ + D + +L+ + R M QA+Y Sbjct: 709 ESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSA 768 Query: 549 DPENRG---HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 HFGLA Y HFTSPIRRY D+ +HR + + + G + Sbjct: 769 GTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSG--------LLN 820 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDD 665 ++ + + ++A A R + +V +G + V G V + Sbjct: 821 QARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKV-ETCEGFVMGVRNNGIQVFVPK 879 Query: 666 LFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK---IDF 722 ++ ++ + + D + + + + V VR+ +VN ++ ++ Sbjct: 880 YGLESIIVLQTSAASGTTIDVEEMSVK-VNGDVVIKELEPVTVRI-SVNEKNQQRPRVEL 937 Query: 723 SLISS 727 LI Sbjct: 938 QLIKP 942 >UniRef50_A5VDM6 RNAse R n=10 Tax=Sphingomonadales RepID=A5VDM6_SPHWW Length = 769 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 245/773 (31%), Positives = 366/773 (47%), Gaps = 47/773 (6%) Query: 18 IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77 +P+RE I++ +T E PA + E+A ++G E++ L+ L+ M +G + R + + Sbjct: 9 LPTREQIIDFITTSEAPAGKREIARAFGLQGNEKI-ALKALLKDMADEGLIDSARGRAFH 67 Query: 78 LPERLDLVKG--TVIGHRDGYGFLRVEGRKDDLYLSSEQM---------KTCI-HGDQVL 125 + V +G E + Q+ + + GD++L Sbjct: 68 RMGGIPKVTVLRITDVTDEGVPLAVPETWHGE-NGPPPQLRVREIRARKGSALGVGDRIL 126 Query: 126 AQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG 185 A+ A A ++ L + ++G + ++ P D R D L+ Sbjct: 127 ARTEEAGSG--WIAHPMKKLARGEALMLGILHRDGDRLWLRPVDKREKRDTLV--SDAGD 182 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQV 245 A G +V+ E RP R ++ E LGD +A+ H IP ++P+ V ++ Sbjct: 183 ADAGDLVLAERAGRPPR---ITARVTERLGDPFAPRSFSLVAIHKHGIPDVFPETVIEEA 239 Query: 246 AGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG----GGWRLWVAIAD 301 + + GR DLRDLP+V ID DARD DDA++ GG+R VAIAD Sbjct: 240 GLVT---RLDLGEGREDLRDLPIVAIDPADARDHDDAIWAMPDDDPGNPGGFRAIVAIAD 296 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VS+YVRP + LDREA+ RG SVYFP +V+PMLPE LS +CSL DR MVC +TV + Sbjct: 297 VSFYVRPGSALDREAKKRGNSVYFPDRVVPMLPEALSADICSLKHGEDRAAMVCHLTVKA 356 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYKVLDKA 420 G L ++F AV+ A + Y + G L L+ L +K L A Sbjct: 357 NGTLANWRFARAVVRIAANIAYEDAQAAIDGAPVAGTWDKALADSALKPLWACWKALASA 416 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R+ R + + E + + + + RI + +R DAH+L+E+ MI AN++AA+ +E K P Sbjct: 417 RDAREPLDLDLPERRVVLDEKGRILSVAPRERLDAHRLVEDYMIAANVAAAKALEAKKAP 476 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 ++R H+ PS E + + + LA +E G P + +L+ + D + +L Sbjct: 477 VMYRDHEPPSREKLVALKDYLATFDMEFALGQVVRPATFNHILKRITDDAIRPQIMEQVL 536 Query: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYL---------LAKEQG 591 RS QA Y P N GHFGLAL SYAHFTSPIRRY DL +HR++ L Sbjct: 537 RSQTQAYYAPRNAGHFGLALGSYAHFTSPIRRYADLLVHRSLVGAYGLETGKPRLEGPGR 596 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 T E M +G+ S AERRA EA RD D F+ +VG + I Sbjct: 597 SGDIVPRTALTQEEAERMTPIGELISQAERRAMEAERDTIDRYVAAFLSTKVGELLDTRI 656 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 + V FGFF ++ L DGLV VS+L + + +D+ Q L GE SG Y G ++ +R+ Sbjct: 657 TGVQPFGFFATVEGLGGDGLVPVSTLGAERFHYDEGAQALEGEESGDRYTPGMKLRLRLV 716 Query: 712 AVNMDERKIDFSLIS-----SERAPRNVGKTARE----KAKKGDAGKKGGKRR 755 N + F L R PR R + + + KGG+RR Sbjct: 717 EANPINGSLRFELEEGASHLPMRGPRGTRGPKRPMMGRRGRPANIRHKGGRRR 769 >UniRef50_Q7NB22 VacB n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB22_MYCGA Length = 707 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 198/696 (28%), Positives = 344/696 (49%), Gaps = 25/696 (3%) Query: 24 ILEHLT-KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYAL---- 78 IL+ + + +KP + +L + + + + M +G+L L Sbjct: 14 ILQIVRLEDKKPIPPGIIVKKL--DNRYTKTAIYKEIDKMLANGELKKLANNKVVLGYQN 71 Query: 79 --PERLDLVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRK- 134 P+ ++ G + +G GF+++E + Y+ + + ++ D V PL Sbjct: 72 SAPDLSKIMVGRLAIGTNGNGFIKLENEELSKYYVHNTNLNNALNNDLVEFAPLTVQNDW 131 Query: 135 ---GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 +A I++VL ++ VG Y V+PDD +L + +++ + + Sbjct: 132 YKHDLTDACILKVLERARTRYVGTYEDTGDEYLVLPDDPKLIYKVVLDR-HYLELKEHDR 190 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251 ++ E+ + ++ +V+ +G G+ +D H I + Q + + LK E Sbjct: 191 ILFEIIE--IKQGVIRAALVKKIGSKEDLGIDIDAIAYNHLIEPTFSQEIINEAKSLKYE 248 Query: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311 + + K R DLRDL +TID A D DDA+Y +K + L VAIADV +YV+ P Sbjct: 249 LDDHQKEIRKDLRDLSFLTIDPASALDLDDAIYVKKIDDDSYNLKVAIADVCHYVKFDGP 308 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFY 371 +DR AR + TSVY ++VIPMLPE LSN LCSLNP VD+ +V ++ + G++ ++FY Sbjct: 309 MDRGARTKATSVYLANKVIPMLPEELSNDLCSLNPGVDKFVIVGDLMIDGTGKIMSHEFY 368 Query: 372 EAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFES 431 A+++SH R +Y +V DL++ + + L+E L K+L + + +RG + F+ Sbjct: 369 PAIINSHKRFSYEEVNEYFSATNDLKDVDPSIRQMLDEARVLAKILRRMKIKRGYLQFDV 428 Query: 432 EEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPST 491 +E + I + +A ++IE+ M+ AN + F K ++R+H KP+ Sbjct: 429 DETSIELDDRFEPINILKKPHGEAQEMIEDFMVAANEAVCLFASKYNLDFIYRVHPKPAV 488 Query: 492 EAITSFRSVLAELGLELPGG-NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP 550 + SF + L E+ G N + D + L + AD +++ +LLRSM +A Y Sbjct: 489 HKLNSFANWARTLEFEIFGDLNSIKSTDIQKWLTNNADHKQIKLINKLLLRSMNKAYYSV 548 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 EN HF LA + Y HFTSPIRRY D +HR + + Q + ++ Sbjct: 549 ENTRHFSLASKHYTHFTSPIRRYADNIVHRILWMFVFDPQAYTDLQRNE-----LKSHLV 603 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF-KGVISSVTGFGFFVRLDDLFID 669 + + E A + RDV +L +M + +GN + I+++T FG FV LD+ I+ Sbjct: 604 EWCDLINKQELVAVDCERDVNAFLYVKYMSNFLGNWYHNVTINAITNFGMFVELDN-GIE 662 Query: 670 GLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDR 705 GLV +++++ DYYR+D L+G ++ + Y++GD Sbjct: 663 GLVRLNNINGDYYRYDPNTDSLIGRNTHKKYQIGDT 698 >UniRef50_Q2ST22 Rnase R (VacB) and RNase II family 3'-5' exoribonucleases n=4 Tax=Mollicutes RepID=Q2ST22_MYCCT Length = 704 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 200/719 (27%), Positives = 351/719 (48%), Gaps = 33/719 (4%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERL 82 I+E L + S ++L + ++ L +E++ ++ + L +++ Sbjct: 4 KIIEILKTNKHKVSLNKLLTYFN---ALDYSLIKNYLDQLEKNNKITISLENNIYLLDQI 60 Query: 83 DLVKGTVIGHRDGYGFLRVEGR--KDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 KGT+ + G+GF+ + +D +++ + IH D+V L + R +A Sbjct: 61 -YKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIHQDEV-VYILKQEEDNRLKAI 118 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGF--VVPDDSRL-SFDILIPPDQIMGARMGFVVVVELT 197 ++ ++ ++G F +P+D SF +I ++ ++ Sbjct: 119 VIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVIVNKNEFKYEEFNIIKAKII 178 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVP--EE 255 + K +++ ++G++ + +I + + + E+ Sbjct: 179 S--CKERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDKLEK 236 Query: 256 AKAGRVDLR--DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 R + + +VTIDG D++D DDA+ EK ++L+VAIADVSY+VR T LD Sbjct: 237 EFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIADVSYFVRYKTSLD 296 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 +EA RG S Y ++VIPMLP +LS+ LCSLNP +L VCEM + + K YE+ Sbjct: 297 KEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNKKVYES 356 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S ARL Y +V + + + K L+ + LYK L+ + ++G ISF+ E Sbjct: 357 VIISKARLNYDEVNNYFKTKTWTHD--DKTKKMLDIAYELYKKLENLKAKKGTISFDVRE 414 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEA 493 K I + + I+ + A KLIE+ M+ N + A + + P L+R H+KP + Sbjct: 415 PKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDE 474 Query: 494 ITSFRSVLAELGLELPGGNKPEP------RDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 + ++ L G+ NK +++ E + D + E+L LLR M +A Sbjct: 475 LINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIKDETEVELLNISLLRYMDKAK 534 Query: 548 YDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSME 607 Y EN GHFGLA Y HFTSPIRRY DL +HR +K L + + + Y Sbjct: 535 YGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLENNANY----- 589 Query: 608 EMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLF 667 + ++ + E ++ E R+V C++ML++V N + IS+V FG F++LD+L Sbjct: 590 -VNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAVLKFGIFIQLDNL- 647 Query: 668 IDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++GLVH+S++++D +D+ + L+ + YR+G +V+V++ V++ +R IDF LI Sbjct: 648 VEGLVHISNMNSD-LVYDETNRILI-KPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE 704 >UniRef50_O84402 Ribonuclease R n=16 Tax=Chlamydiaceae RepID=RNR_CHLTR Length = 694 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 188/659 (28%), Positives = 311/659 (47%), Gaps = 41/659 (6%) Query: 84 LVKGTVIGH-RDGYGFLRVEGRK---DDLYLSSEQMKTCIHGDQVLAQPLGADRKG-RRE 138 LV GT+ H R G+GF+ + + D+++S+ +K + GD VL + R G +R+ Sbjct: 18 LVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGDHVLVALPFSLRGGEKRK 77 Query: 139 ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMG--ARMGFVVVVEL 196 I +VL + +VG + + + + + + + + ++G ++++ Sbjct: 78 GVIHKVLSRGKTVLVGTIVSLINPTLAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKT 137 Query: 197 TQR----PTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 P+R + + E +G+ + I +P AV Q+ + ++ Sbjct: 138 PVWKENYPSREPPPLAML-EFIGNISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKH 196 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPL 312 +A R DLRDL TID A+DFDDAV G + L V IADVS+YV P++ L Sbjct: 197 VTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSAL 256 Query: 313 DREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYE 372 DREA R S+YFP +VIPMLP LS+ LCSL P VDRL + MT S +G L+ Y+ Sbjct: 257 DREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILR 316 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESE 432 +V+ S R+TY +V I++ ++Q P+ K + ++ L ++ RE+RG Sbjct: 317 SVIRSKYRMTYDEVDEIIE-----KKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLP 371 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTE 492 + + + + ++ AHKLIEE M+ AN A + FR H+ P+ E Sbjct: 372 SFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNEE 431 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 ++ F+ +G + EP L E+ A P +L + +RSMK A Y EN Sbjct: 432 SLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASYSTEN 491 Query: 553 RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQL 612 +GH+GL L Y HFTSPIRRY DL +HR + + L+ E E + Q+ Sbjct: 492 KGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVE----------------EEHLEQI 535 Query: 613 GQHCSMAERRADEATRDVADWLKCDFMLDQVGNV----FKGVISSVTGFGFFVRLDDLFI 668 + CS ER A +A + K F+ + +K I + + G L + Sbjct: 536 VRACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCH 595 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 +G + + L Y ++ E + R G + V++ +V + + I+++L+ + Sbjct: 596 EGFIPAAKLPQAYVL----QTKIGLEELPEHLRPGAVISVQLASVTLLTQSIEWTLVEA 650 >UniRef50_D0WF06 Ribonuclease R n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF06_9ACTN Length = 694 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 222/707 (31%), Positives = 320/707 (45%), Gaps = 68/707 (9%) Query: 89 VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP-------LGADRKGRREARI 141 + GYGF++ + ++ MK+ GD V A R R + R+ Sbjct: 2 LEVMPSGYGFVKTAEGE--FFIPESAMKSAFDGDVVAVSRASGGDGNRRARRTDRPQGRV 59 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 RV+ + IVGRY G VVP+D R+ DI AR G +V V +T P Sbjct: 60 ARVVTRAHASIVGRYEIAEPYGVVVPEDPRIRHDIFTLRRDASTAREGDIVRVRITAYPE 119 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEA-KAGR 260 A G I EV+G G+ VD+ + H + + Q A + + G Sbjct: 120 AGQPAFGSIEEVVGHEGDAGIDVDLIVARHTLATCFSDDALAQAASAEAGIDRALRDEGY 179 Query: 261 VDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRG 320 DLR TID DARDFDDA+ ++ G R+ V IADVS YV +TPLD EAR R Sbjct: 180 RDLRHRITFTIDPSDARDFDDALSFDEV-DGLLRVGVHIADVSRYVSWATPLDFEARARA 238 Query: 321 TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHAR 380 TSVY +V+PMLPE LSN +CSL P V R + ++ S L Y AV+ S AR Sbjct: 239 TSVYLVDRVLPMLPEKLSNDICSLKPNVARRAVTVDLYYSHALELVRVDAYPAVIESKAR 298 Query: 381 LTYTKVWHILQGDQDLREQYAP-------------------------------------- 402 Y V L+ + L Sbjct: 299 FVYEDVQACLESMRALGSSDLEGRETPRYACSADELSGSCTLDGALRSALGSSVAGDDMH 358 Query: 403 ----LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKL 458 + LE LH + + L R GGI F+ EE K + + R ++ +RNDA L Sbjct: 359 GIRAIAARLESLHRIARALRARRARAGGIDFDREETKVRLDDQGRPLSVDLRRRNDATSL 418 Query: 459 IEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE----LPGGNKP 514 +EE MI AN + AR + A ++R+H+ P + + +L E G + L Sbjct: 419 VEEAMISANEAVARIMRDAGAACIYRVHEAPDSGDLIDIVPILDEFGYDDAVSLSAFAMG 478 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 P+ +L RP+ ++ ++LR+MKQA Y PE + HFGLA +Y HFTSPIRRYP Sbjct: 479 SPKAVQAVLARAHGRPEGSLVSMLVLRAMKQARYAPECQPHFGLASAAYLHFTSPIRRYP 538 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL HR +K +L G + + H S E+ A+ A R+ + Sbjct: 539 DLMAHRLLKAVLRGRDGTTSAQ---------EAALPDIADHASRQEKVAETAARESQELK 589 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 + + + +G F G++S V+ GF+VR+ ++ +G V + L +++ D + L G Sbjct: 590 MYELLSEHIGEPFDGMVSGVSTSGFYVRI-EMGAEGFVPMRDLG-EFFHLDSARRMLSGV 647 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREK 741 SG RLGD V +RV AV R F+L S+ RA R+ + R + Sbjct: 648 ESGDVVRLGDAVRIRVVAVFPYARTATFALASNRRASRHSRASWRPR 694 >UniRef50_B6YQJ4 Putative ribonuclease R n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YQJ4_AZOPC Length = 586 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 174/585 (29%), Positives = 299/585 (51%), Gaps = 25/585 (4%) Query: 156 YFTEAGVGFVVPDDSRLSFDIL----IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIV 211 E ++ +I I ++ +++V + + + K + KI Sbjct: 16 LKEEKIFQRILNLFKAFPREIFDCQQISYRIDPTSQTNSLIIVRVLE-ILCKKKILVKID 74 Query: 212 EVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTI 271 + T + + +P +P+ E+ + + + R D R+ TI Sbjct: 75 KSKYQLKNTKSTIPSIQDEYNLPCKYPEEAEKAAQKIPNHITLTEISNREDFRETLTFTI 134 Query: 272 DGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIP 331 D ++A+DFDDA+ +K + + V IADV++Y++P + +D+EA RGTS+Y +VIP Sbjct: 135 DPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALKRGTSIYLVDKVIP 194 Query: 332 MLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ 391 MLPE L N +CSL P D+LC + K ++ Y+ ++ S R TY + I++ Sbjct: 195 MLPESLCNEVCSLRPNEDKLCFSVIFEMDGKAKIHNYRIRRTIIRSDHRFTYEEAQEIIE 254 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 + L + L+ L K+L + R G I F E +F + E I + Sbjct: 255 RSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFDLDREGNPLDIYLKK 314 Query: 452 RNDAHKLIEECMILANISAARFV-----EKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 N+A++L+EE M+LAN + A V K +P ++R+H P E I + + ++ G Sbjct: 315 NNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIEKIKNLKQLVRSFGY 374 Query: 507 ELPGG--NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYA 564 +L N ++ + L + V + +++T+ LR+M++AIY EN GH+GLA + Y Sbjct: 375 KLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEKAIYTTENVGHYGLAFKYYT 434 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRYPD+ +HR ++ L ++ Y S + + +L +HCS E A Sbjct: 435 HFTSPIRRYPDMIVHRLLEKYLNRK------------YSVSKKSLERLCKHCSEQESIAI 482 Query: 625 EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF 684 +A R + +FM +VGN F GVIS+VT +G +V L + +GL+ + LD+D+Y Sbjct: 483 QAERASIKAKQVEFMSTKVGNTFDGVISNVTEWGLYVELGN-GCEGLIPMRYLDDDFYEL 541 Query: 685 DQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSER 729 D+ RL+G++ Y LGD +++RV N+++R++DF+ IS ++ Sbjct: 542 DEKTYRLIGKTKKHIYCLGDPLQIRVIHSNLEKRQLDFAPISFKK 586 >UniRef50_Q54BH9 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54BH9_DICDI Length = 1006 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 157/705 (22%), Positives = 269/705 (38%), Gaps = 87/705 (12%) Query: 79 PERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADR-- 133 + L++G Y + + ++ + E + + GD V + + Sbjct: 243 IKGGKLIQGIFRTSITNYREATVSNREMEKEILIQGIENINRAVDGDIVAVELFDQSKWN 302 Query: 134 ---------------------------KGRREARIVRVLVPKTSQIVGRYFTEAG----- 161 K + ++V ++ G + Sbjct: 303 TPSTLIMLENEGVEEDDDSIAKDSLISKKQPTGKVVGIIKRNWKPYCGAVEFKQDDNNTT 362 Query: 162 --------VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEV 213 + +P D R+ I I Q+ +G +VV + Q G V+ Sbjct: 363 TKTSTGLHFLYFMPIDKRIP-KIRIKSRQVSNL-IGKRIVVAIDQWDKNSKYPSGHFVKD 420 Query: 214 LGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVA--GLKEEVPEEAKAGRVDLRDLPLVT 270 LG + L +IP+ + AV + + + + V GR DLR + + Sbjct: 421 LGPLGDKETESQVLLLQFDIPHHPFGAAVMKCLPSPDIMDRVTSADMVGRKDLRKECIFS 480 Query: 271 IDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVI 330 +D D DDA++ + G + V IADVS++V+ T +D EA NR TSVY + I Sbjct: 481 VDPPGCTDIDDALHIKDLGKGIMEVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRI 540 Query: 331 PMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMSSHARLTYTKVWHI 389 MLP LS LCSL VDR C ++ G + ++ ++++ S A LTY + Sbjct: 541 DMLPGELSGNLCSLMSNVDRFAFSCIWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIR 600 Query: 390 LQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA-ERRIERIE 448 + D + Q + +L L++L K+L K R +RG + S + KF +E Sbjct: 601 I----DDKSQNDQITVNLRNLNSLAKILRKQRFDRGALYLASPQVKFKTEELGGDPSDVE 656 Query: 449 QTQRNDAHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLE 507 Q + + +IEE M+LANI A+ + K A+ R H P+ A ++ G + Sbjct: 657 IYQLRETNSMIEEFMLLANIWVAKKIYKHFPGCAMLRRHPTPNKAAFDLLTKLIENKGYK 716 Query: 508 LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP------ENRGHFGLALQ 561 + D + D + + M R M A Y E+ H+GLA Sbjct: 717 FSTTTSKDLADSLDSAVDKNDSYFNTLCRIMTTRCMSPAKYFSSGSLPYEDFNHYGLATD 776 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 Y HFTSPIRRYPD+ +HR + + ++ + + + L ++ + + Sbjct: 777 IYTHFTSPIRRYPDIIVHRLLASAIG---------IQSVSLNLENKTISALTENNNFRHK 827 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN-- 679 A A+R F + I V F V + +G V+VS ++ Sbjct: 828 MAQYASRGSTQLHTLIFFKGRKSVE-DAYIIRVKANAFVVLVPRYGFEGTVYVSDPNSST 886 Query: 680 ----------DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 + Y ++ Q L T+R+ D+V V + + Sbjct: 887 ATTNGGGGTSNIYNYNHEDQTLGN--GIHTFRVFDKVTVEIYVDD 929 >UniRef50_B6K5N0 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5N0_SCHJY Length = 969 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 162/786 (20%), Positives = 291/786 (37%), Gaps = 109/786 (13%) Query: 10 EAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLV 69 ++Y +P + +L+ ++ + + E + Q + R L ++G++ Sbjct: 208 STKEYITKLPDADILLDMISANAEAQAERE-SRTAGKTLFTQHWSMSRML-TCIKNGEIH 265 Query: 70 FTRRQCYALPERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLA 126 G V + + G + V G + + + + GD V Sbjct: 266 K----------------GIVNINPYNFLEGTVSVLGYDKPVIILGRSNLNRSVQGDLVAI 309 Query: 127 QPLGADRKGR----------------------------------------REARIVRVLV 146 + L AR+V +L Sbjct: 310 EILPQSEWKTETSEIASDENDEEQVEEPVAQDESAFQAENEKEVARKHILPTARVVGILK 369 Query: 147 PKTSQIVGRYFT---------EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELT 197 VG + P D R+ I QI +G +VV + Sbjct: 370 RNWRPYVGHVDMASVANRTGSSQQSVLLTPMDRRVP-KIRFRTRQISRL-LGQRIVVSVD 427 Query: 198 QRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAG------LKE 250 G V LG+ + L +++ Y +P++V + + + Sbjct: 428 NWDIDSRYPEGHFVRALGEMETKEAETEALLLEYDVQYRPFPKSVLDCLPAEGHEWRVPQ 487 Query: 251 EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPST 310 + + R D R+L + +ID +D DDA++ G + + V IADV+++V+PST Sbjct: 488 DKSDPLWHKRADFRELLVCSIDPPGCQDIDDALHARPLPNGNYEVGVHIADVTHFVKPST 547 Query: 311 PLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370 +D EA +RGT+VY + I MLP +L LCSL P+++R C + + F Sbjct: 548 AMDAEASSRGTTVYLVDKRIDMLPMLLGTDLCSLRPRIERFAFSCIWEMDENANVVNVSF 607 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++V+SS +Y + + D ++ PL + + L L K L + R + G ++ Sbjct: 608 TKSVISSKEAFSYAEAQARI----DDKKAQDPLTEGMRILLRLSKKLKQRRLDNGALNLA 663 Query: 431 SEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDK 488 S E K + E IE Q + + L+EE M+LANIS A+ + + + A+ R H Sbjct: 664 SPEVKVQMDNETSDPMDIEIKQLLETNSLVEEFMLLANISVAQKIYETFPQTAVLRRHAA 723 Query: 489 PSTEAITSFRSVLAEL-GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAI 547 P + + +L ++L + + AD +L+ + R M A Sbjct: 724 PPASNFEALQDILHVCKDMQLKCDSSKALAHSLDECSDNADPYFNTLLRILTTRCMLSAE 783 Query: 548 Y------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 Y + H+GLA Y HFTSPIRRY D+ HR + + E H + Sbjct: 784 YFCSGTFAYPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAASIDYETLHPSLQNKQK- 842 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 ++ + + R A A R ++ + + + + V GF V Sbjct: 843 -------LVDICNGINYRHRMAQMAGRASVEYYVGQALKGR-ETREEAHVIKVFKNGFVV 894 Query: 662 RLDDLFIDGLVHVSSL--DNDYYRFDQVGQRLM-----GESSGQTYRLGDRVEVRVEAV- 713 + ++G+V+ +L FD+ L + ++ +V V V A+ Sbjct: 895 FIAKFGLEGIVYTRTLSTPEPVVEFDEAQYALNVSIKAPKQHKIRIQMFQKVLVSVGAIR 954 Query: 714 NMDERK 719 + K Sbjct: 955 DEHSGK 960 >UniRef50_B3PMK9 VacB-like exoribonuclease II n=2 Tax=Mycoplasma RepID=B3PMK9_MYCA5 Length = 718 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 188/734 (25%), Positives = 342/734 (46%), Gaps = 31/734 (4%) Query: 6 FQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERD 65 F ++ N I +E + +L K+ K S ++A EL ++ + L + L ++ Sbjct: 2 FPKKRFNNKPNTINIKEEDVLNLIKKFKTLSFLKIAKELKLKSCDNHY-LTKFLYSLLDA 60 Query: 66 GQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD--------DLYLSSEQMKT 117 ++ T+ + L + V+ + GF+ ++ + +++ Q+K Sbjct: 61 NKIDKTKNGDFYLLNYVCEVENQISITNKRLGFIDLDNALETNNDENKCSAFVAPFQLKN 120 Query: 118 CIHGDQVLAQPLGADRKGRRE---ARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLS- 173 + D V A+ + + I V+ I+G + D R Sbjct: 121 VLDKDLVQAKIYSYQDENNKTLYKGVISNVIKHNCKNIIGFIEFKENRPIFNAFDERNKA 180 Query: 174 FDILIPPDQIMGA-RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 I + +V + + P ++ A+ ++ + + + ++ Sbjct: 181 NFFFINTSNFPKIIKSTDLVKCIILE-PNAKSVAIA-FDSIITNLNDKNYVIKKIMAAND 238 Query: 233 IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 + + V ++ A + +E+ E RVDL L VTIDG D +DFDDA+ C K G Sbjct: 239 VKGGFGLEVLEKAATIPQEIIPEDYDNRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGN 298 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 ++L++ IADVS+YV+ +D+EA RGTS+Y P +VIPMLP LSNG+CSLNP V R C Sbjct: 299 YKLFIHIADVSHYVKEGDAIDKEALERGTSIYLPDKVIPMLPFALSNGICSLNPNVIRAC 358 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHN 412 + E+ + + G+ K Y +++ S RLTY +V ++ + L L Sbjct: 359 LTLELELDNHGKNVSSKVYASLIKSDYRLTYNEVNDFFNQKIEVPNEINNL---LSRARE 415 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 + K+L + + G + FE EE K I + I+ I + +A KLIE+ M+ AN + A Sbjct: 416 ISKILRAKKIKDGYVDFEIEEPKIIM-EDNDIKDIVIRKDGEAEKLIEDFMVRANETIAE 474 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLE-LPGGNKPEPRDYAELLESVADRPD 531 +++ K P+++RIHDKP T +++ + +L +G++ + P+ + ++ + Sbjct: 475 MMKELKIPSIYRIHDKPETLKLSALQELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKL 534 Query: 532 AEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQG 591 + L+ LLR+M++A Y N GHFGLA +Y+HFTSPIRRYPDL LHR I+ + + Sbjct: 535 DDYLKMALLRTMQKAQYSSNNIGHFGLASSAYSHFTSPIRRYPDLLLHRLIRKYILNGKF 594 Query: 592 HQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 N + +E+ + Q S AE+ A R V D +K F + F + Sbjct: 595 DPKNYEKV------KDEIEAIAQMNSEAEKTAMTVERSVVDVMKSKFFEKFINKTFVAQL 648 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 S+ FG F +++ L+ ++ + + +T ++G ++ + Sbjct: 649 VSIEKFGAFFNIEEYQASVLIRFEDDEDGLIKI----SSYEAKGKSKTLKVGSEYKIAIT 704 Query: 712 AVNMDERKIDFSLI 725 +++ ++ I+ L+ Sbjct: 705 SIDHEKGNINAKLV 718 >UniRef50_D0NYF6 Exosome complex exonuclease RRP44, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NYF6_PHYIN Length = 1079 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 152/691 (21%), Positives = 265/691 (38%), Gaps = 67/691 (9%) Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYF--------TEAGVGFVVPDDSRLSF 174 QV A + + R+V ++ + +G VVP D ++ Sbjct: 397 QVALVQSDASQHAKPAGRVVGIIQRNWRKFCCSLEAPRDGVTLNASGSCLVVPVDRKVP- 455 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 I I Q M V+V + P +G V LG + L H+IP Sbjct: 456 KIKIQTRQQEAL-MDKRVLVAIDSWPAYSKFPLGHYVRTLGVIGDKETETTVLLLEHDIP 514 Query: 235 -YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 + V + + ++ E +GR DLRDLP+ +ID + +D DDA++ + G Sbjct: 515 CDQFSDEVMRCLPAEDWKITPENASGRRDLRDLPVCSIDPPNCKDIDDALHAKLLPNGNL 574 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 ++ V IADV+++V P + LD EA +RGTS Y + + MLP +L+ LCSL D Sbjct: 575 QVGVHIADVTHFVAPGSALDEEAADRGTSTYLVDRRLDMLPGLLTTKLCSLTDVEDHFAF 634 Query: 354 VCEMTV----SSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ--------------- 394 + S ++ +F ++++ S A L+Y + L + Sbjct: 635 SVLWELQLVGQSDVQVVDVQFCKSLIRSVASLSYQQAQEFLDDPEAGGVYGQDSTLKKKK 694 Query: 395 -----DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN-AERRIERIE 448 + E+ L ++ L+ + L R E G ++ S E +F+ + + ++ Sbjct: 695 KGESDEQFERRQLLGSGIKTLNTIATRLRAKRIEAGALTLASPEVRFVLDTETQNPLDVQ 754 Query: 449 QTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTEAITSFRSVLAELGLE 507 D + L+EE M+LANI+ A+ + ++ R H PS S +G+E Sbjct: 755 MYTLRDTNALVEEFMLLANITVAKKIVRHFPTFSMLRRHPAPSKRQFDLLCSQAKAVGVE 814 Query: 508 LPGGNKPEPRDYAELLES-----------VADRPDAEMLQTMLLRSMKQAIY------DP 550 L + +D + + A+ ++L+ M R M A Y P Sbjct: 815 LHVDTSKQLQDSLDAADKEAAGSKRKHGDKANPYFNKLLRIMTTRCMMPASYFSSGEVAP 874 Query: 551 ENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML 610 H+GLA Y HFTSPIRRY D+ +HR + + Y + + Sbjct: 875 PEFHHYGLAAPIYTHFTSPIRRYADVVVHRLLAAAIGVAP--------LPSYLENKSHLH 926 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 ++ + A A R + VI+ V G V L I+G Sbjct: 927 EISDQLNRRHHAAQLAGRASVTLHTVLYFQQY-PTRTDAVITKVKNNGVGVLLPRFGIEG 985 Query: 671 LVHVSSLDN----DYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 ++ + D D +FD L + ++ DRV V+V + + + Sbjct: 986 MIFLCGKDEQDDQDVVKFDGARHTLTLVQKSRKLQVFDRVRVKVYVALTFGNRQELKMDL 1045 Query: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQV 757 + K+ +A + ++++ Sbjct: 1046 LDEDDDEDDNQEDAAQKEAEANLRAARKKRK 1076 >UniRef50_Q98QL0 Ribonuclease R n=1 Tax=Mycoplasma pulmonis RepID=RNR_MYCPU Length = 725 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 209/739 (28%), Positives = 353/739 (47%), Gaps = 23/739 (3%) Query: 21 REFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE 80 + +L++L K K S E+A I L + L ++ G +V + Sbjct: 2 KNLVLQNL-KSNKAYSFLEIARINKINPNFN-SQLSKALFSLLDQGLIVKNNDGNFIKVN 59 Query: 81 RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREA 139 + ++G + F+ + +++ I+ +V A + K ++ A Sbjct: 60 EIKKIQGIFKQSNRNFAFIETADEQ-SYFVAKAHFNGAINSFEVEAIVYESPFEKDKKYA 118 Query: 140 RIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRL-SFDILIPPDQIMGARMGFVVVVELTQ 198 + ++L +I+G G+ + + S+ + DQ + V++V + + Sbjct: 119 VVKKILKNTHPEIIGFIKISNGIKYFNAFEESFRSYKFFV--DQNIDVEEDDVILVVVEK 176 Query: 199 RPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 K V+ + +DI L + +P+ V + A +++ V E+ Sbjct: 177 --IVDQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDFPEDVLDESALIEDHVIEKDYQ 234 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARN 318 R DLRD ++TIDGED +DFDDA+Y EK + + L V IADV++YV+ ++ +D+EA Sbjct: 235 NRKDLRDKLIITIDGEDTKDFDDAIYVEKNKD-HFLLSVHIADVAHYVKENSAIDKEALR 293 Query: 319 RGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH 378 R TS+Y P VIPMLPE LSNG+CSLNP VDRL M ++ + +G + YE +++S Sbjct: 294 RATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSK 353 Query: 379 ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIF 438 RLTY +V L L K L + L K+L+ +++ G I+ E EE+K I Sbjct: 354 HRLTYNQVNDFYNNKIKL---DPNLEKMLNDSLELSKILENYKKDEGYINLEIEESKVIL 410 Query: 439 NAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFR 498 + E + I+ QR + LIE M+ AN + A + K K P+++R+HD PS E++ F Sbjct: 411 DKEGKTVGIKVIQRGLSEVLIENFMVRANEAVAWKMNKLKLPSIYRVHDNPSIESLVLFE 470 Query: 499 SVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEMLQTMLLRSMKQAIYDPENRGHFG 557 L LG++ P+ +++ E + ++ M+LR+M++AIY +N GHFG Sbjct: 471 KTLKTLGIDFDTPKITSPKAFSDSFEKIKQNYQIDNFVKLMVLRTMEKAIYSDKNIGHFG 530 Query: 558 LALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCS 617 LA Y+HFTSPIRRYPDL LHR IK ++ + + + + S Sbjct: 531 LASSYYSHFTSPIRRYPDLQLHRLIKQMVFDKSNLKEKKNHFSLI------LSDVSVQSS 584 Query: 618 MAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL 677 E A R + D K ++ ++G K I S+ FG FV +D + GL+H+S+L Sbjct: 585 KKEVEAVSIERQINDIKKAEYYESKIGKSLKAQIVSILSFGMFVEFED-KVSGLIHISNL 643 Query: 678 DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT 737 + ++ + G L+ S+ Y+LG ++V V V+ + K+D L + + Sbjct: 644 LGEDFQVSEDG--LLISSNKTKYKLGQEIDVVVVKVDKNLGKVDVVLEKDYQEYLKKEQA 701 Query: 738 AREKAKKGDAGKKGGKRRQ 756 + K K + + Sbjct: 702 FQAFKKNKFTQDKEKQNGK 720 >UniRef50_UPI00019264F4 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F4 Length = 1349 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 179/737 (24%), Positives = 314/737 (42%), Gaps = 76/737 (10%) Query: 23 FILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAME------------RDGQLVF 70 I+++L + ++D L + R L+A+ + Sbjct: 579 EIIKYLHSKGYKGTKDTL----------DFVEISRSLKALIYLHSKGYRGTNWELNEPYL 628 Query: 71 TRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPL 129 + +C L E+ L+KG++ F+++ DL++ E ++GD V Q L Sbjct: 629 SNTECEILLEQGKLLKGSIQVFSRLDSFVKIGDGVKDLHVQGLESRNRALNGDIVAVQLL 688 Query: 130 G--ADRKGRREARIVRVLVPKTSQIV-GRYFT----EAGVGFVVPDDSRLSFDILIPPDQ 182 ++ +++A +V+++ K +IV G+ G + P DS I++P Sbjct: 689 PDQEEKTRQKKAEVVKIIEEKHPRIVPGQVKPYYGHRYGFAIMFPTDSSFP-IIMLPLKN 747 Query: 183 IMGARMG-------FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-P 234 + + + ++T A GK+V LG++ + ++ + I Sbjct: 748 FPKDFIDRPLDFEKSLFLAKITNWDQNLYYACGKLVSFLGESGSVEAETEAIIKKNLIYD 807 Query: 235 YIWPQAVEQQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGW 293 + + + + +P E R DLR + TID ARD DDA+ C+K + Sbjct: 808 TPFSKKCLKTLPQKNTWCIPSEELNKRSDLRKECIFTIDPSTARDLDDALSCKKIADDLY 867 Query: 294 RLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCM 353 + V IADVSY+V+ ++ LD+ A+ R TSVY +VIPMLP +LS LCSLNP VDRL Sbjct: 868 EVGVHIADVSYFVKENSALDKVAQLRATSVYLTQKVIPMLPSILSEDLCSLNPGVDRLAY 927 Query: 354 VCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGD-------QDLREQY-----A 401 + S G + KF V+ S +LTY + +++ D + Y Sbjct: 928 SVIFNIKSDGTIINEKFVRTVICSQVKLTYCQAQQLIENQLTDYLITNDFPKIYGGFTLE 987 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIE 460 + L L + K L K R G IS+ E F N E + + + D++KLIE Sbjct: 988 NIKDSLYTLFQISKNLRKQRHNAGAISYNLPEIIFNLNEEKDKPIGLSLYKYKDSNKLIE 1047 Query: 461 ECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+LAN+S AR + + + A+ R H P+ + + L+ G+ Sbjct: 1048 EFMLLANMSVARKIYEAHPKKAVLRRHPPPNQIMMEDLAKLFQLYELDFDLGSNQSINKS 1107 Query: 520 AELLESVAD---RPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSP 569 E L + + + ML + A Y + ++ H+GL + Y HFTSP Sbjct: 1108 LEKLSGLENELKTFLEPAIVLMLTKPFLLASYFCSGAVTNEQDFHHYGLNVPLYTHFTSP 1167 Query: 570 IRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRD 629 IRRYPD+ +HR + L + + S+E++ ++ C++ + AD+A+ + Sbjct: 1168 IRRYPDILVHRCLTAALDSK----------FAVNKSVEDIKRITDQCNIKKYNADKASEE 1217 Query: 630 VADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY-YRFDQV- 687 ++ C F++ KGV+ +V + L V+ L Y Y D+ Sbjct: 1218 SSELFFCLFLMQSGSLQEKGVVVAVLNNRVDILCTRLGFVKRVYYQDLPCKYTYELDEKM 1277 Query: 688 GQRLMGESSGQTYRLGD 704 +L + + ++ + Sbjct: 1278 RPKLSLKWTKDDKKVFE 1294 >UniRef50_Q4Q8N7 Rrp44p homologue, putative n=4 Tax=Trypanosomatidae RepID=Q4Q8N7_LEIMA Length = 920 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 180/847 (21%), Positives = 308/847 (36%), Gaps = 103/847 (12%) Query: 7 QEREAEKYANP--IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGL------RRR 58 EA++ +N + R++I + + + ++ L Sbjct: 114 ASEEAQRVSNLRCVSLRDYIKLTIASDSDLLEKIQYEEPEGMKESPLTRQLFTPHLGMAA 173 Query: 59 LRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSE-QMKT 117 + A DG L + E G + G DG+ F + + M Sbjct: 174 MDAGVHDGSLYK---GKLRVSETSCFF-GEIRGKFDGHTF-------QRILIQGRVNMNR 222 Query: 118 CIHGDQVLAQPLGADRKGRR----------------------EARIVRVLVPKTSQIVGR 155 IH D V Q L ++V +L G Sbjct: 223 AIHDDVVAVQLLPVSSWRGPKGSAPLPESASEEDAITAGFVPTGKVVGLLSSNRRPFCGS 282 Query: 156 YFT-----------EAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT 204 + P ++R+ I I + + VV + P + Sbjct: 283 LDEGELEQVKANMSDNVSILFQPKNNRIPR-IRISTRHVQDLMDKRLSVV-IDDWPLYSS 340 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 VG VEVLG + L H++P+ + +AV + + V ++ +A R+DL Sbjct: 341 FPVGHYVEVLGKIGDRDTEAMVILLEHDVPHYDFSEAVHDCLPKGQWSVTKDEEARRLDL 400 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSV 323 RDL +V++D RD DDA++C G + V IADV++++ T +D EA R TSV Sbjct: 401 RDLCIVSVDPLGCRDIDDALHCRVVNGNHLEVGVHIADVTHFLHEGTAMDDEAAKRSTSV 460 Query: 324 YFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTY 383 Y + I MLP++L+ LCSL DR + F + ++ S L Y Sbjct: 461 YLVDRRINMLPQLLTENLCSLVEAEDRYAFSILWEFDENLNVVRDWFGKTIIRSRGALYY 520 Query: 384 TKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER- 442 ++ D + L EL L K REE G + S+E KF + E Sbjct: 521 GDAQRMIDNPADTS----DIAVSLRELMRLSKHFKAQREEDGALFLASQEFKFKVDNEHV 576 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVL 501 ++ Q +A+ +IEE M+ AN + A V + + L R H+ P+ A + L Sbjct: 577 NPTDMQVYQTFEANSMIEEWMLYANAAVATKVYESYPQWTLLRRHEPPAEGAFDTLNDAL 636 Query: 502 -AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDP------ENRG 554 ++L + L + E D ++++ + R ++QA Y + Sbjct: 637 YSKLRVRLDDTTSLTLNKSLDKCEDPQDPYFNKLIRILTTRCLRQAQYFSSGGIPKDEFY 696 Query: 555 HFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQ 614 HFGLA+ Y HFTSPIRRY D+ +HR + + E H + E M + + Sbjct: 697 HFGLAMPIYTHFTSPIRRYADVLVHRQLAAAIGIE--------SISEQHMNAERMEAVAE 748 Query: 615 HCSMAERRADEATRDVADWLKCDFMLDQVG---NVFKGVISSVTGFGFFVRLDDLFIDGL 671 + + +A A RD + ++ + +G + V+ FV + + Sbjct: 749 NLNYRHEQAQRAGRDSQNLFTGFYLRNFEDGKIPDEEGYVVRVSETHVFVLVPKYGQESR 808 Query: 672 VHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE---AVNMDERKIDFSLISSE 728 + L+ RL DRV+V ++ ++ K+ F LI Sbjct: 809 IPREQLE-------------------TVPRLLDRVKVAIQLKRQGDVMRTKLVFRLIGLM 849 Query: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAK 788 R G + + + K + + G KAA+ + ++A+ Sbjct: 850 RDGEEGGVLVADDEAYDVIED-SEEASEDAPKASQGASATSVGAGDNDTKAAEPELKRAR 908 Query: 789 KPSAKTQ 795 +T Sbjct: 909 ADGTETA 915 >UniRef50_A1U792 VacB and RNase II family 3'-5' exoribonuclease n=3 Tax=Marinobacter RepID=A1U792_MARAV Length = 660 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 194/669 (28%), Positives = 321/669 (47%), Gaps = 21/669 (3%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M L R+ + + + GTV +GF+ ++ D++L E+M+ + G Sbjct: 1 MLNADALNQLRQLKTDIKQNKVVFPGTVKSTNGRFGFVALDEG-RDVFLPPEEMQKVLPG 59 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+V KG+ + + +L + VGRY + FV P+ ++ I IPP Sbjct: 60 DRVNVT-EHEVEKGKTQGVVDELLESHLTTFVGRYLIKGKGHFVAPETPGINRWIFIPPK 118 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + GA+ + ++ + P + K K++ V+G G+ L ++ WP+ V Sbjct: 119 ERKGAQPDDFIYCQIHRHPIKDGKGQAKVLRVIGKAGEPGIERAFTLANFDLADAWPEEV 178 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 + Q L EE + GR D + P VTID +D DDA+ G W L +AIAD Sbjct: 179 QTQADALTEESITSHREGREDRTEQPYVTIDSPGTQDMDDALMATPNATG-WTLSIAIAD 237 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 + + P +P + EA NR T++YFP + +PMLP+ +S LCSL P+V RL +VC++ V++ Sbjct: 238 PTAMIEPGSPAEEEAFNRATAIYFPGEPLPMLPDAISTRLCSLMPEVPRLALVCDLQVNN 297 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP--LVKHLEELHNLYKVLDK 419 G L Y F++AV+ S +L+Y V H+++G +D + P + L++LH L K Sbjct: 298 DGSLGDYSFHQAVIRSQGKLSYELVSHLIEGREDDEIKALPEAVANSLDQLHQAATALRK 357 Query: 420 AREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKE 479 R E +S + E + + +RI IE +N+AH+L+EECM+ AN AA F+EK + Sbjct: 358 WRSEHALLSNDRPEFRLRLDENKRIRVIEPAVQNEAHRLVEECMVAANRCAADFLEKQGQ 417 Query: 480 PALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTML 539 LF H + + R +L L + + L++ ++++L Sbjct: 418 -GLFIQHPGLRDDRADNIRKLLEGYAPHLAELDATSAEGFKALMKHTDGLQADVPVKSIL 476 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 R + +A E H G+ L +Y FTSP+R++ D +HR IK L + N + Sbjct: 477 SRQLARAELGFEPAPHQGMGLAAYTTFTSPLRKFSDFYVHRLIKAALWDQPIKALNPQQL 536 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + + RA A + WLK D+ + +G I+ GF Sbjct: 537 --------------ESLQTTQFRARMAANTLEAWLKSDYAKGLPADPMEGTITRTMPSGF 582 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 FVRLD ++G V L+ + FD V RL+ +G+ ++L RV V V+ + R+ Sbjct: 583 FVRLDCNGLEGFVSCKDLEG-KFSFDPVTLRLVHNKNGRIFQLDQRVTVSFSGVDEERRQ 641 Query: 720 IDFSLISSE 728 I+F L+ +E Sbjct: 642 INFKLLEAE 650 >UniRef50_C5J794 VACB-like ribonuclease II n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J794_MYCCR Length = 696 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 187/699 (26%), Positives = 332/699 (47%), Gaps = 25/699 (3%) Query: 33 KPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGH 92 +P + E+ +I + + ++ + + + Y P L+ G Sbjct: 14 QPKTFIEITKNFNIPYNKNYT-ITNQISKLIENFVVFKLPDGRYHCPVFLESKVGIYRSK 72 Query: 93 RDGYGFLRVEGRKDD---LYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREARIVRVLVPK 148 + +GF+ + +++ ++ + GD+V + ++ I ++L Sbjct: 73 QATFGFVEDKDNPQSENNIFVPAKFSANSLEGDEVRVNIYKDSLKPEQKYGVITKILHRN 132 Query: 149 TSQIVGRYFTEAGVGFVVPDD--SRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 ++G+ P + +++ F P + G V V++ R K Sbjct: 133 LKFLIGKIVENGTFLDFEPINLNTKVLFRWQ-NPSMTSSLKSGDFVKVKIVDYQKRILKI 191 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDL 266 +++ +G + V I + + I+ + V Q+ + +E+ + R+DLR+ Sbjct: 192 S--LIQKIGHESEHFLNVKIPIIDSGVSTIFNEEVIQESKQIPQEI-KSIDPDRIDLRNE 248 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 ++TIDG+D +DFDDA+ E K + L V IADVSYYV + LD EA+ RGTS+Y P Sbjct: 249 VVITIDGDDTKDFDDAISIETKEN-NYILKVHIADVSYYVTEDSALDLEAKARGTSIYLP 307 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 VIPMLPE LSNG+CSLNP VDR + E + G+ K Y +V+ S+ RLTY +V Sbjct: 308 HIVIPMLPESLSNGICSLNPNVDRYTITMEALIDKNGQNLSVKIYPSVIRSYKRLTYHQV 367 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER 446 + L L+ L ++L K +E +G + E +E+K I + + ER Sbjct: 368 NEFFDNKLSFGD--PKLENLLKNALKLGQILRKYKENQGYVDLEIDESKIILDEQGYTER 425 Query: 447 IEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGL 506 IE +R + +IE+ M+ AN + ++++ P L+R+H+KP ++ I ++ LGL Sbjct: 426 IEIKERGLSENIIEDFMVRANENVSKYLADHNFPNLYRVHNKPDSQRILQLNQIIKNLGL 485 Query: 507 ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF 566 E+ + + +A+ + + ++ + ++ +LR+M++AIY N GHFGLA + Y+HF Sbjct: 486 EIQIPYNVDSKSFADFVNQIKNKQNDNFIKIAILRTMQKAIYSDVNEGHFGLASKFYSHF 545 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPDL LHR I++ + + + + E++A Sbjct: 546 TSPIRRYPDLILHRIIRHFIFNKNTDITHFNNILAIE---------ASSTTELEQKAFVL 596 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN-DYYRFD 685 R + K +++ +G F I+S+ FGFFV ++ +F D LV V SL + D ++ Sbjct: 597 ERKIVGIKKAEYINKHIGKSFNAQINSILKFGFFVEIEGIF-DALVGVKSLPDNDEDVYN 655 Query: 686 QVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +S ++LG V V + V+ K+ + Sbjct: 656 VSEDGFSISNSKFEFKLGQIVNVTITEVDTWNGKVSAKI 694 >UniRef50_P37202 Exosome complex exonuclease dis3 n=4 Tax=Ascomycota RepID=DIS3_SCHPO Length = 970 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 166/790 (21%), Positives = 293/790 (37%), Gaps = 100/790 (12%) Query: 6 FQEREAEKYANPIPSREFILEHLTKREKPAS-RDELAVELHIEGEEQLEGLRRRLRAMER 64 AE+ ++++ ++L E +A I +EQ+E + + + Sbjct: 196 NARLAAEQGIQVSTLKDYV-QYLPDSEILLDMVSAIADA--IASKEQVESGTKNVYEL-- 250 Query: 65 DGQLVFTRRQCYALPERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHG 121 ++ + A + ++ KG + Y G + V G + +S + + G Sbjct: 251 ----HWSMSRLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQG 306 Query: 122 DQVLAQPLGADRKG-------------------------------------RREARIVRV 144 D V Q L D+ A++V + Sbjct: 307 DIVCIQILPQDQWKTEAEEIADDDEDVVVSTAAEPDSARINDLELITKRNAHPTAKVVGI 366 Query: 145 LVPKTSQIVG-----RYFTEAGV----GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 L VG G + P D R+ I Q G +VV Sbjct: 367 LKRNWRPYVGHVDNATIAQSKGGSQQTVLLTPMDRRVP-KIRFRTRQAPRLV-GRRIVVA 424 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA------GL 248 + G V LG+ + L +++ + +P+AV + + Sbjct: 425 IDLWDASSRYPEGHFVRDLGEMETKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKV 484 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 + R D RD + +ID +D DDA++ G + + V IADV+++V+P Sbjct: 485 PADKTHPLWKNRKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKP 544 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 +T +D EA +RGT+VY + I MLP +L LCSL P V+R C + + Sbjct: 545 NTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKV 604 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 F ++V++S +Y + D ++ PL + + L L K+L + R + G ++ Sbjct: 605 HFTKSVIASKEAFSYADAQARI----DDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALN 660 Query: 429 FESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIH 486 S E + + E +E Q + + L+EE M+LANIS A+ + + A+ R H Sbjct: 661 LASPEVRIQTDNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRH 720 Query: 487 DKPSTEAITSFRSVLAEL-GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 P S + +L G+ L + + +L+ + R M Sbjct: 721 AAPPLTNFDSLQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLS 780 Query: 546 AIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 A Y P + H+GLA Y HFTSPIRRY D+ HR + + E + + Sbjct: 781 AEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLS--- 837 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 ++++ + R A A R ++ + V + V GF Sbjct: 838 -----DKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEE-DAYVIKVFKNGF 891 Query: 660 FVRLDDLFIDGLVHVSSLDN---DYYRFDQVGQRLMGE------SSGQTYRLGDRVEVRV 710 V + ++G+V+ SL + + + +L E ++ +V VRV Sbjct: 892 VVFIARFGLEGIVYTKSLSSVLEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQVRVRV 951 Query: 711 EAV-NMDERK 719 V + K Sbjct: 952 TTVRDEHSGK 961 >UniRef50_Q5KDY7 SSD1 protein, putative n=4 Tax=Agaricomycotina RepID=Q5KDY7_CRYNE Length = 1671 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 168/813 (20%), Positives = 296/813 (36%), Gaps = 133/813 (16%) Query: 78 LPERLDLVKGTVIGHRDG--YGFLRVEGRKDDLYL-SSEQMKTCIHGDQVL--------- 125 L + LV G + ++ ++ + D+Y+ S+ + GD V Sbjct: 834 LLQAGKLVVGVLRVNKKNRSDAYVATDVLDADIYICGSKDRNRALEGDIVAVELLDVDEV 893 Query: 126 --------------------------AQPLGADRKG--------------------RRE- 138 + L + + Sbjct: 894 WSTKKDKEEKKRKKEENATYDLKPSTVKKLEKKKDDVEVEGQGLTLFDDEEVNDDTKPTY 953 Query: 139 -ARIVRVLVPKTSQI----VGRYFT----------------------------EAGVGFV 165 +V V+ Q+ +G + + Sbjct: 954 AGHVVAVVERMPGQLFSGQLGVLRPSSAATKEKQELERREREGEKARKEEPETRPKIVWF 1013 Query: 166 VPDDSRLSFDILIPPDQIM-------GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM 218 P D R+ I IP +Q A + V + + P G +VE LG Sbjct: 1014 KPTDKRVPL-IAIPTEQAPADFIDNPDAYSNKLFVATIKRWPITSLHPFGTLVEELGAIG 1072 Query: 219 GTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDAR 277 + + L+ P + + + + + VPE R DLR+ + TID ++ Sbjct: 1073 NSEVETSALLKDCNFPTEEFSEMTMKCLPPMPWSVPEREYDVRTDLREERVFTIDPPHSK 1132 Query: 278 DFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVL 337 D DDA+ + + G + + V IADVS++V+ + LDREAR R TSVY + +PM P +L Sbjct: 1133 DLDDALSFKDNKDGTFTVGVHIADVSFFVKANAQLDREARKRATSVYLVQRAVPMFPPLL 1192 Query: 338 SNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLR 397 S LCSL P +RL TV +G + KF + ++ S A+LTY +++G R Sbjct: 1193 SEDLCSLVPDYERLTFSAIFTVDEEGNVLQKKFAKTIVKSCAKLTYDDALTVVKGGALPR 1252 Query: 398 EQYA------PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 + + + + LH++ + R E G + S + F F+A+ R + Q Sbjct: 1253 SKTSRIHLATDIEGDIRSLHSIASKMRARRIENGAMVVSSSKVSFEFDAQGRPVDCQTYQ 1312 Query: 452 RNDAHKLIEECMILANISAARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 +A ++EE M+L N S AR + E AL R H+ PS + SF + +LG ++ Sbjct: 1313 NGEASVIVEEFMLLTNQSVARIIANALPEQALLRRHEPPSERRLESFVARATKLGFDMDP 1372 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYA 564 + + + V D A + + + +++A Y D H+GL Y Sbjct: 1373 TSAGT---LQKSFDKVLDNDSALCIDLLRKKVIQRARYFCAGMLDIAKFAHWGLNTPLYT 1429 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRY D+ +HR + L + +++ + Q C+M ++ A Sbjct: 1430 HFTSPIRRYADVLVHRMLDACLT------SPNPNEVKFLMDRDQVAKAAQQCNMKKQSAK 1483 Query: 625 EATRDVADWLKCDFM----LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 A C + V + +++V F V + + ++ VHV + + Sbjct: 1484 LAEEQSVHLFLCILINDLTEHYGPVVREARVTNVLETAFDVIIPEFGVEKRVHVDKMPVE 1543 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE 740 +D+ L + + D + + D+R + +RA + A + Sbjct: 1544 TAVYDEHRDILSLYWTTK-----DVIS-HLADTTEDKRLLKIKSHGEQRALGSSTSQATD 1597 Query: 741 KAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEK 773 D +Q K + P Sbjct: 1598 DTALFDGNSPDVVSKQYAKSAHPSPLKFEGLRS 1630 >UniRef50_P75529 Ribonuclease R n=2 Tax=Mycoplasma RepID=RNR_MYCPN Length = 726 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 183/726 (25%), Positives = 332/726 (45%), Gaps = 28/726 (3%) Query: 21 REFILEHLTKREKPASRDELAVEL--HIEGEEQLEGLRRRLRAMERDGQLVFTRRQ---- 74 ++ I + K + V + + G + + R + + + + Sbjct: 8 QKRIFAIVKKENGKPIPPGIVVRMMENQAGFPGKQQVYRAIDDLL-EWHIFRKSGGATNQ 66 Query: 75 ---CYALPERL--DLVKGTVIGHRDGYGFLRV-EGRKDDLYLSSEQMKTCIHGDQVLAQP 128 Y L + + +G + GF+R + K Y+ + + GD V P Sbjct: 67 LLINYELADPVLDQKFQGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGDLVEFCP 126 Query: 129 LGADR-KGRREARIVRVLVPKTSQIVGRYFTE----AGVGFVVPDDSRL-SFDILIPPDQ 182 L + + +A +++++ G + E +V D+ R I+ Sbjct: 127 LDKPQVGDKFDAAVLKIVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRFYLTPIVNKASV 186 Query: 183 IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVE 242 V ++ + I ++LG+N + + + H I + VE Sbjct: 187 PAELESNTKVAFQIDEYDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFEDNDVVE 246 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 QQ A L+ + E++K R DL +L VTID ++D DDA+Y ++ G + L+VAIADV Sbjct: 247 QQAAKLQFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKG-FVLYVAIADV 305 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQ-VIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 +YYV+ ++ LD EAR++ +S+Y P V+PMLPE LSN LCSLNP R +VCE+ Sbjct: 306 AYYVQRNSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDH 365 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 + RL + Y A + S R Y++V L+ L+++ A +++ L+ L +++ + R Sbjct: 366 EARLNFSEVYPATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQR 425 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 +++G I E + + + I A +IE M++AN + A + K Sbjct: 426 KKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTNHKVHL 485 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGG--NKPEPRDYAELLESVADRPDAEMLQTML 539 +R+H +PS + + + EL + P + A L+ D P ++ +L Sbjct: 486 PYRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDIFVILL 545 Query: 540 LRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 LR++ +A Y HF + Y HFTSPIRRY DLT+HR + L Sbjct: 546 LRTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNL-----FTPERFTD 600 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 E+ Q+ + + E + + R D+L ++ QVG F G IS++T FG Sbjct: 601 TEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGI 660 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK 719 F+R+D+ DGL+ ++S+ D++ F++ L G+ + + +R+GDR+ ++ ++ +++ Sbjct: 661 FMRMDENNFDGLIKITSIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKR 720 Query: 720 IDFSLI 725 +L+ Sbjct: 721 AILTLV 726 >UniRef50_A7AWK8 RNB-like domain containing protein n=1 Tax=Babesia bovis RepID=A7AWK8_BABBO Length = 951 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 164/688 (23%), Positives = 265/688 (38%), Gaps = 58/688 (8%) Query: 72 RRQCYALPERLDLVKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTCIHGDQVL--- 125 + + E V GT +R +G D+ + + D V Sbjct: 288 QNGYVSCGEDEYKVCGTYNLNRAIHGDAVCIEIVTDGMDVVVPDSGDDAAVPEDIVAEDS 347 Query: 126 --AQPLGADRKGRR------EARIVRVLVPKTSQIVGRY-----------FTEAGVGFVV 166 + L D+ + E R+V +L + G + V Sbjct: 348 EDIKLLDVDKTDKPLECLKKECRVVGILKRNWREYCGTLMAVDEAIDMVGHSHMVQRIFV 407 Query: 167 PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 P D+R+ + I I + +VVV + K G VE++GD + Sbjct: 408 PVDARIPY-ICIDTRKSSELENKRIVVV-IDSWDRFSRKPSGHWVEIIGDVEDLETESAV 465 Query: 227 ALRTHE-IPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 LR HE I +P ++ + E R D R + ++D +D DDA+ Sbjct: 466 ILREHEVITREFPPKAYMELPPADWKPGAEDIKLRKDFRKNLVFSVDPPGCKDIDDALGF 525 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 G + V IADV+++V+ + +D+EA R T+VY + MLP +L+ LCSL Sbjct: 526 SVLDNGNIEVSVHIADVTHFVKAGSFIDKEASKRCTTVYLVDRRTDMLPSLLTTNLCSLV 585 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK 405 P DRLC + +FY+ ++ S TY ++ + + Sbjct: 586 PNEDRLCFSVVWQFDRNNEIVDTQFYKGIIRSSRAFTYKDAQDLIDAGGS-----DNITE 640 Query: 406 HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIL 465 L+ L N+ K+L R E G + ES E KF + + ++++ D ++++EE M+L Sbjct: 641 ALKGLDNIAKILRAKRFESGAVELESPEVKFEY-ELTDVRKMQKYVLYDTNRMVEEFMLL 699 Query: 466 ANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLE 524 AN+S A + E+ AL R H P E + + L++ G+E GN + + L Sbjct: 700 ANVSVATKIFERFPTSALLRRHPPPVDERLKVLQRSLSQHGIEFEFGNSRDLNLSLKRLV 759 Query: 525 SVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTL 578 D L+ M R M QA+Y + H+GL+ + Y HFTSPIRRY D+ + Sbjct: 760 QSGDPRLGSALRIMTTRCMSQAVYCHSGEAGVTSFKHYGLSSELYTHFTSPIRRYADVIV 819 Query: 579 HRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDF 638 HR + L E E+ + + R A R+ + F Sbjct: 820 HRMLAAALDIEAMDTSFYQ----------ELSSQCEVLNKRHRNATWCGRESSRLFAYLF 869 Query: 639 MLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQ 698 + + + + V +L I+ V D FD QR G+ Sbjct: 870 LKQKGEVTATATVIGTSEKRICVIAHELGIEATARV-----DISEFDAQTQRATLAC-GK 923 Query: 699 TYRLGDRVEVRVEAVNMDER-KIDFSLI 725 L D V V++ A N R I LI Sbjct: 924 HVNLFDHVTVKLSAENKHYRYNIKAELI 951 >UniRef50_Q23DE7 RNB-like protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23DE7_TETTH Length = 946 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 174/778 (22%), Positives = 303/778 (38%), Gaps = 104/778 (13%) Query: 12 EKYANPIPSREFILEHLTKREKPASRDEL-AVELHIEGEEQLEGLRRRLRAMERDGQLVF 70 EK N EF+ + + + IE E Q + L Sbjct: 177 EKGLNSTTIFEFVKSIKGEYPNLMDFLGISEQAMDIEFEGQQVLFQEHL----------- 225 Query: 71 TRRQCYALPERLDLVKGTVIGHRD--GYGFLRVEGRKDDL-YLSSEQMKTCIHGDQVLAQ 127 T + + DL +G + R+ G + + ++ + + +HGD + + Sbjct: 226 TLNELSNKVKAGDLFQGKLKIDRNDINDGTVFIPKYDFEIKIIGQPNLNRALHGDLIAIE 285 Query: 128 PLGADRKGR-----------------------------------------------REAR 140 L + R Sbjct: 286 LLPENEWISSNYMGDNEDEEEDFKNVHEAVKTNNSNKQLEEKYLNVVEKIKKLNLNPTGR 345 Query: 141 IVRVLVPKTSQIVGRYFTEA----------GVGFVVPDDSRLSFDILIPPDQIMGARMGF 190 +V V+ G EA + +P D R + + G Sbjct: 346 VVGVIKRIQRYFCGEVTPEAINLPNLPSGIELREFIPADGRFPH-FYLRTTNGSQLQ-GK 403 Query: 191 VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVA--G 247 + + +G ++GD+ T D+ L H + Y + + V + Sbjct: 404 KIQIGFDNWSKSSKYPLGHFKMLIGDSGDTKAEGDVILLEHNVEYRAFSKQVLDCLPPQD 463 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 K ++P+ RVDLR + + +ID +D DDA++C G + + V IADVSY+VR Sbjct: 464 DKWQIPQSEIKKRVDLRGINVCSIDPPGCKDIDDALHCISLPNGNFEVGVHIADVSYFVR 523 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 P T +D+EA+NR T+VY + MLP++L+ LCSL DRL + + Sbjct: 524 PDTAIDKEAQNRCTTVYLVDRRTDMLPKLLTETLCSLKDDGDRLAFSVVWVMDKDANIIE 583 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 +++++++ S A L Y K ++ D E L K + L+ L K L + R E G + Sbjct: 584 TRYHKSIIRSVASLNYGKAQSMIDDVNDNSE----LTKSIRNLNMLAKKLKQKRIENGAL 639 Query: 428 SFESEEAKFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRI 485 S S + KF F+ E ++ Q + + LIEE M+L N++ A + ++ R Sbjct: 640 SLASTQVKFTFDDETHNPVDVQFYQMYETNSLIEEFMLLGNVAVAEKIVSHFPSISILRQ 699 Query: 486 HDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQ 545 H +P + I +L ++G L + D + + D ++++ M RSM + Sbjct: 700 HSQPKPKQIKELSQILQKIGFNLDYSSNRNLADSLDKVNRPNDHFFNKLVRIMTTRSMNE 759 Query: 546 AIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 A Y D H+GLA Y HFTSPIRRY D+ +HR + + E Sbjct: 760 ATYFCTADADYPEFYHYGLAAPLYTHFTSPIRRYADVLVHRLLAAAIDIE--------AI 811 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 Y + +M ++ + +M R A A+R +D+ F D+ ++SS++ G Sbjct: 812 PAYMSNKLKMAKICEKMNMRNRMARFASRSSSDYNTYLFFKDKQIEEV-AMVSSISKTGA 870 Query: 660 FVRLDDLFIDGLVHVS--SLDNDYYRFDQ--VGQRLMGE--SSGQTYRLGDRVEVRVE 711 V + ++G + S L + + Q L+ + +G ++L D ++VRV Sbjct: 871 TVVVPRYGLEGQIKFSEKDLKENEKLLQELKQNQSLIIDFVVNGNRHKLFDYLKVRVS 928 >UniRef50_Q46363 Acetazolamide conferring resistance protein zam n=8 Tax=Chroococcales RepID=ZAM_SYNY3 Length = 782 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 186/741 (25%), Positives = 336/741 (45%), Gaps = 37/741 (4%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 +L + +K + L +L E E +E L+ L A+E+ G LV R Y R D Sbjct: 8 LLSYFVD-DKLVAGKFLEKKLGCESPEAIEALQIALDALEKMGVLVKER-GKYNRVTRED 65 Query: 84 LVKGTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGAD-RKGRREARI 141 +V+ + G+ F + D+Y+ + +GD+VL + + R+ E ++ Sbjct: 66 VVEARLRCSSKGFCFAIQDDEDATDIYVREGNLSNAWNGDRVLVKVIKDGTRRKSPEEQV 125 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILI-PPDQIMGARMGFVVVVELTQRP 200 +L ++ + VP D RL F++ + +Q +G + +V V + + P Sbjct: 126 HLILDRANPSLLAQVKKSEDNYRAVPLDDRLLFELELQDKEQNLGEAVDHLVHVSVLRYP 185 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGR 260 + +G++ +VLG + DI H++P W + + L + + R Sbjct: 186 IAQHPPLGEVTKVLGSDAEAAADTDIVSCKHDLPLGWTPEAIEALQSLPKVIEPGELKKR 245 Query: 261 -VDLRDLPLVTI-DGEDARDF---DDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315 L LVT DG + A+ E + W++ + I D+++Y+ + LD+ Sbjct: 246 TWITAKLQLVTFGDGPRGETLPWQEVALSLESQAN-QWQVGIHITDIAHYIAEDSLLDQL 304 Query: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375 AR RGT+VY Q+ P+ PE L G CSL P DRL + +TV +G +TG++++ +V+ Sbjct: 305 ARKRGTTVYLEEQICPLFPEGLI-GRCSLIPDEDRLALSFFLTVDDRGEVTGFEYHSSVV 363 Query: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELH-NLYKVLDKAREERGGISFESEEA 434 +L +++V L + + + P L+EL + ++ R +RG + ++E A Sbjct: 364 KVDHQLDFSEVQTALADIESVSGELKPYGGLLQELFFQICPLIKSQRLQRGSFNLQTETA 423 Query: 435 KFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI 494 + E R+ I + L+ E M++ A ++ P L+ P E + Sbjct: 424 SPRLD-EGRLGVIMTQETLPIRSLLAELMVVLQREVALQLQALGIPGLYCGQVAPEGEDL 482 Query: 495 TSFRSVLAEL--GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 T + L G+++ P+ Y L + P +L +L ++K Y Sbjct: 483 TDIVKLAGNLDLGVKIDLEGDIIPQHYHHLSQGFESLPAKAVLNHLLANTLKIEKYFSHP 542 Query: 553 RGHFGLALQ-SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS------ 605 HF LA Y H SP +RY DL + R +K +L + + + +TG + Sbjct: 543 APHFALAYDSGYTHCVSPAQRYGDLVIQRLLKLVLTEGRDRRTKQMKTGVELNAHTCRNQ 602 Query: 606 --------------MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVI 651 ++ QL + E+ A++A +D+ K + M + G +F+G+I Sbjct: 603 ISWNVLPPNLQETIEGDLHQLVLGLNDREQTAEDAEKDLLGLKKAEKMKARAGEIFRGLI 662 Query: 652 SSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 + V +GFFV++ DL +GLVHVSSL +D+Y F L+G S +YRLG+ V+V+V Sbjct: 663 TGVQSYGFFVQIFDLLAEGLVHVSSLKDDWYEFRSRQCALVGRKSRTSYRLGNEVDVQVR 722 Query: 712 AVNMDERKIDFSLISSERAPR 732 +V+ ++ID +++ Sbjct: 723 SVDYYRQQIDLGAVNNAPKDS 743 >UniRef50_D2UXR9 Exosome complex exonuclease RRP44 n=1 Tax=Naegleria gruberi RepID=D2UXR9_NAEGR Length = 1053 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 156/752 (20%), Positives = 278/752 (36%), Gaps = 92/752 (12%) Query: 113 EQMKTCIHGDQVLAQPLGADRKGRR----------------------------------- 137 + M IHGD V + L R Sbjct: 316 KHMNRSIHGDIVAVEILPKSEWSRPSSITIMDDNDIDLENNHPLTGTSESDSSEKSLTSS 375 Query: 138 -------------EARIVRVLVPKTSQIVGRYFTEA------GVGFVVPDDSRLSFDILI 178 ++V ++ G + VP D + I I Sbjct: 376 FYSRFVNSERLIPTGKVVGIIKRNWRSYCGSLDEDTDSEEGLNKVLFVPVDRCIP-KIRI 434 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IW 237 Q M + V + G + +G+ T ++ L H++P+ + Sbjct: 435 VSRQCKEL-MNKRICVMIDGWSVNSKYPDGHYISTIGEIYNTDTESEVILLEHDVPHYKF 493 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 Q++ + + E+ R DLR L +V++D D DDA++ + G + V Sbjct: 494 SQSIIDCLPPKDWQPTEKDMERRRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIEIGV 553 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADV+ +V+ T +D EA RGT+VY + I MLP +L+N LCSL VDRL Sbjct: 554 HIADVTNFVKEGTAIDIEAAKRGTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFSVIW 613 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVL 417 S +G + + ++++ S +TY + ++ D +E+ L L L + K+L Sbjct: 614 KFSPEGDIKSVDYTKSLIRSRKSMTYEEAQKVI----DDKERDDELATDLRLLMQISKIL 669 Query: 418 DKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 K R E G ++ S KF AE +E Q + + ++EE M+LANI+ A+ + K Sbjct: 670 KKKRNEAGSLTLASPAVKFSMEAESSNPTDVELYQLRETNSMVEEFMLLANIAVAKKITK 729 Query: 477 -AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLES---VADRPDA 532 A R H + + +L G+ L + + + S + D+ Sbjct: 730 EFPMVACLRRHPPVNPKKFEPLLEMLKRHGINLDISSSKILNETLSNIRSSGLIKDKYMD 789 Query: 533 EMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL 586 +++ M+ R M+QA+Y E H+GLA+ Y HFTSPIRRY D+ +HR + + Sbjct: 790 TLVRIMVTRCMEQAVYFISGDCSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLLGAAI 849 Query: 587 AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV 646 + T E +L + R + A R + + Sbjct: 850 GYYPLTEKVT--------DREYSRRLMNDLNKRNRMSQYAQRSSVELYTNVYFNSNPITS 901 Query: 647 FKGVISSVTGFGFFVRLDDLFID--GLVHVSSLDNDYYRFDQVGQRLMGESSGQ---TYR 701 + I+ + G V + + + ++ F++ L+ E + T Sbjct: 902 ERAYITQMKSNGIVVFIPRFGFEHVIFLTKDNVQYSNITFNEETDSLVFEDQNKPTITLT 961 Query: 702 LGDRVEVRV-EAVNM-DERKIDFSLISSERAPRNVG-----KTAREKAKKGDAGKKGGKR 754 + + V +R+ + RK+ ++ +E K K + Sbjct: 962 VFEHVNIRIYVKTSKNYRRKLCVEVVEPGIMKLGADFPYHIVNNQEVDAKTSKQKTLIIQ 1021 Query: 755 RQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK 786 ++ G + + E + + K+ K +K Sbjct: 1022 KEKGMQRSTETANDDKKRKRKDELVQKLKKKK 1053 >UniRef50_A6GC79 Ribonuclease R n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GC79_9DELT Length = 660 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 214/661 (32%), Positives = 325/661 (49%), Gaps = 30/661 (4%) Query: 90 IGHRDGYGFLRVE--GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVP 147 + GYGF + K +++ ++ + GD++ +++ E RI ++ Sbjct: 2 HVNPGGYGFAQPLSGDEKRSVFIPPGYLRGALDGDEIEVVAWESEKG--LEGRIEAIVTR 59 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIP--PDQIMGAR------MGFVVVVELTQR 199 K ++IVG G + DD R+ + ++ P G++ G VVV + Sbjct: 60 KRTRIVGVLVEFGGGWILEVDDPRIIWPVVCVAGPKGRKGSKAPRPDMPGMVVVANIVNY 119 Query: 200 P-TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 P +R + ++ VLG+ V L I + V + A + E V +E Sbjct: 120 PGSRDPEIEVQVERVLGEPGALETEVQKILIDRRIEDFFDPKVLAEAAEVPEIVLDEDLE 179 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG----GWRLWVAIADVSYYVRPSTPLDR 314 R DLR L +TID DARDFDDAV E +RL VA+ADVS+YV+ T +D Sbjct: 180 NRADLRGLAFMTIDPPDARDFDDAVCVELLGEDPQTADYRLHVAVADVSHYVQEGTAIDE 239 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA+ R S Y P + IPMLP LS+ +CSL P+ DRL MV M V++ G+ + ++ A+ Sbjct: 240 EAQRRCFSTYLPDRSIPMLPPELSSHMCSLVPKRDRLAMVTSMRVNAAGQTSEHEVRAAI 299 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S RLTY +V L+G + L ++ + L L AR RG I + EA Sbjct: 300 IHSRRRLTYAEVAEELEGAEQLGKKAR---GRVFALRACSDRLRNARMRRGAIELDLAEA 356 Query: 435 KFIFNAERR--IERIEQTQRND----AHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 K + + R I + +++ + A+ LIEE MI AN + + PA+FR+HD Sbjct: 357 KVVLEEDDRTRIRDVVKSRSSKSMARAYNLIEEMMIAANEAVGALAVEHGLPAVFRVHDL 416 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P E +T+ LG + PR + L+ + + A L ++LR+M QA Y Sbjct: 417 PDEEKLTTLTQAAHILGTKADPERLRTPRGAQKFLKRLDGKSFASALNMLMLRAMAQAQY 476 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 EN GHF LA +Y HFTSPIRRYPDL HR +K +AK+ G G E Sbjct: 477 AVENVGHFALASPAYVHFTSPIRRYPDLISHRVLKAWVAKKGGPAGPKAVLPRMP-GREA 535 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 S ER A R+ + FM D++G+ F G +S ++ FG FV+++ ++ Sbjct: 536 SEAQALRSSEREREISGAERETQNLFAALFMRDRIGDRFDGRVSGMSQFGLFVQIESPYV 595 Query: 669 DGLVHVSSLDNDY---YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 DG+V V+ L+ D Y D+ G R++GE SG+ +GDRV V + V++ R+ID LI Sbjct: 596 DGMVKVADLEKDRKEPYYRDETGVRMVGEKSGKVITVGDRVVVDLVDVSVGRRQIDLYLI 655 Query: 726 S 726 Sbjct: 656 D 656 >UniRef50_Q0CT74 Mitotic control protein dis3 n=35 Tax=Saccharomyceta RepID=Q0CT74_ASPTN Length = 1034 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 158/752 (21%), Positives = 267/752 (35%), Gaps = 127/752 (16%) Query: 86 KGTVIGHRDGY--GFLRVEGRKDDLYL-SSEQMKTCIHGDQVLAQPLGADRKG------- 135 +G Y G + V L + E I GD V+ + L D+ Sbjct: 276 QGVFNVSPYNYLEGSVSVAAFDKPLIILGRENSNRAISGDVVVIEVLPKDQWKAPSTKIV 335 Query: 136 --------------------------------------------RREARIVRVLVPKTSQ 151 + A++V V+ Q Sbjct: 336 EEEAVTKNDNPESEDTETVVTERERKALQEEVKKAHGKNSEGKPQPTAKVVGVVKRNWRQ 395 Query: 152 IVGRYF-----------TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 VG FV+P D R+ I + Q +G ++V + Sbjct: 396 YVGHVDSGSTGAQGTSGRRQQTVFVLPMDKRVP-KIRVRTRQAADL-LGQRILVTIDAWD 453 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA------GLKEEVP 253 G + LG+ G + L +++ Y +P+AV + + Sbjct: 454 RDSRYPTGHFIRSLGELETKGAETEALLLEYDVQYKPFPKAVLDCLPPEGHDWRVPASKD 513 Query: 254 EEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLD 313 GR DLRDL + +ID +D DDA++ G + + V IADVS++V+P+ +D Sbjct: 514 NVGWKGRRDLRDLLICSIDPPGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPNNAMD 573 Query: 314 REARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEA 373 EA RGT+VY + I MLP +L LCSL P V+R ++ + F ++ Sbjct: 574 LEASLRGTTVYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPNAEVVSADFTKS 633 Query: 374 VMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 V+ S +Y + + D Q L + + L K+L + R + G ++ S E Sbjct: 634 VIRSREAFSYEQAQKRI----DDPSQKDELTESMRTLLRFSKILRQKRMDAGALNLASPE 689 Query: 434 AKFIFNAE---RRIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKP 489 + + + + ++ + + L+EE M+ ANI+ A + + AL R H P Sbjct: 690 VRIEADNDEVGDPLTDVKTKAMLETNSLVEEFMLHANITVASKIYSTFSQTALLRRHATP 749 Query: 490 STEAITSFRSVL-AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 + + L + + L + D + A+ +++ + R M A Y Sbjct: 750 PPQNFEELTNQLSKKRNMRLDVSSSGALADSLDRCVDEANPFFNTLVRILATRCMTSAEY 809 Query: 549 ------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 H+GLA Y HFTSPIRRY DL +HR + + E E Sbjct: 810 FCAGAHGESEFRHYGLASPIYTHFTSPIRRYADLLVHRQLASAIGYEGEDGRAPVEGV-- 867 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ----------VGNVFKGVIS 652 + + + ++ + R A A R ++ + + G +G + Sbjct: 868 -MTRNRLEDICRNINYRHRNAQFAGRASIEYYVGQALKARGEKVSADGVDGGIEEEGYVM 926 Query: 653 SVTGFGFFVRLDDLFIDGLVHVSS--LDNDYYR----------------FDQVGQRL--- 691 V G V + I+G+V + L D FD L Sbjct: 927 RVFENGVVVFVPRFGIEGVVRLEDFVLPGDSALKSVEERRELVIRRESDFDNEEYTLHVS 986 Query: 692 ----MGESSGQTYRLGDRVEVRVEAVNMDERK 719 +S G T L +V+V V +V + + Sbjct: 987 DKGQTDKSRGLTVELFQKVKVNVSSVKEESGR 1018 >UniRef50_A8NXM9 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NXM9_COPC7 Length = 1426 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 160/740 (21%), Positives = 280/740 (37%), Gaps = 129/740 (17%) Query: 78 LPERLDLVKGTVIGHRDG--YGFLRVEGRKDDLYL-SSEQMKTCIHG------------- 121 L LV G + ++ ++ E D+Y+ S+ + G Sbjct: 570 LLAAGKLVVGILRVNKRNRSDAYVSTEVLDADIYICGSKDRNRALEGDIVAVELLDVDEV 629 Query: 122 ---------------------------------DQVLAQ----PLGADR------KGRRE 138 D V + L D K + Sbjct: 630 WGTKKEKEEKKRKKEENSAYDLKAGSRKEDKKKDDVEVEGQGLLLFEDEEVTDEVKPQFA 689 Query: 139 ARIVRVLVPKTSQ-IVGRY---------------------------------FTEAGVGF 164 +V V+ Q G + + Sbjct: 690 GHVVAVVERMPGQLFSGTLGLLRPSSAATKEKQEAERREREGDKAEEPRRGPIERPKIVW 749 Query: 165 VVPDDSRLSFDILIPPDQIM-------GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDN 217 P D R+ I IP +Q A + V + + P G +VE LG Sbjct: 750 FKPTDKRVPL-IAIPTEQAPPDFVQNSEAYADKLFVACIKRHPISSLHPFGTLVEELGPI 808 Query: 218 MGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA 276 + L+ P + + V + + + +PE R DLR+ + TID E A Sbjct: 809 GDIEVETSALLKDCNFPTEEFSENVLKCLPPIPWTIPEHEFKTRKDLREERIFTIDPETA 868 Query: 277 RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEV 336 +D DDA+ + G + + V +ADVS++V+P+T LDR+AR R TSVY +V+PMLP Sbjct: 869 KDLDDALSVKANEDGTYDIGVHVADVSFFVKPNTALDRDARKRATSVYLVQRVVPMLPPA 928 Query: 337 LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDL 396 LS LCSL P DRL T++ + ++ F + ++ S A+L+Y ++++G Sbjct: 929 LSEQLCSLIPGEDRLAFSVIFTINKEAKVLKKWFGKTIVRSTAKLSYRDAQNVIEGKNFD 988 Query: 397 RE-----QYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 + + + ++ L ++ K L R G ++ ES + +F + + + Sbjct: 989 APVGGNYNASDIEEDIKVLDSISKKLRAERFNNGALTLESLKLRFTLGEDGLPTDCGEQE 1048 Query: 452 RNDAHKLIEECMILANISAARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPG 510 R DA+ LIEE M+LANI+ A+ + E AL R HD P + +F LG ++ Sbjct: 1049 RLDANALIEEFMLLANIAVAQQIAVHLPEQALLRRHDSPIERRMNTFLRRAERLGYKMDI 1108 Query: 511 GNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYA 564 + + ++ D ++L+ + ++ +A Y D GH+ L + Y Sbjct: 1109 SSAG---ALMKSFNAITDPTARKLLELVSFKATHRAKYFCAGMLDIAKYGHYALNVPLYT 1165 Query: 565 HFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD 624 HFTSPIRRY D+ +HR ++ L + + + + ++ Q C++ A Sbjct: 1166 HFTSPIRRYADVLVHRQLEATLQGGNDVK--------FTMDRDAVAKVAQQCNIKRDSAI 1217 Query: 625 EATRDVADWLKCDFML----DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND 680 A A C + + + +V F V + + I+ VH+ + + Sbjct: 1218 LAEEQSAHLFLCVLISDLATRYGPVIRPAKVINVLDAAFDVLIPEFGIEKRVHIDQMPIE 1277 Query: 681 YYRFDQVGQRLMGESSGQTY 700 + +D+ L S + Sbjct: 1278 NHVYDEHTHTLQIYWSEKDV 1297 >UniRef50_A6DTA8 Putative ribonuclease R n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTA8_9BACT Length = 754 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 159/734 (21%), Positives = 307/734 (41%), Gaps = 31/734 (4%) Query: 24 ILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLD 83 IL+ L++ + +L L + + E R L ++R+G + ++L E L+ Sbjct: 5 ILQILSQES--LKKSQLRRRL-CKAKGDQEHFNRALADLKREGSIKKEMGGKFSLQE-LE 60 Query: 84 LVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVR 143 + G + GYGF+ + +++ + ++G+ V +KG +I+ Sbjct: 61 VKTGILSLSVGGYGFVNPIDKSTTIFIPPNKTGAAVNGETVEVSITEQSKKG-PVGQIIN 119 Query: 144 VLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRR 203 +L K + G+ G +++P + + L + G + +L R T+ Sbjct: 120 ILESKLESLSGQLQIRKGQPWLIPLRTGIPAVELSVESVPTETKEGDWIRAKLVSRDTQT 179 Query: 204 TKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDL 263 K + + LG+ +D + ++ + E+ + +++ K R DL Sbjct: 180 GKITASLSQSLGNADDLTAEIDAIIDEFDLQSEYSDEAEEAASRIRQR-----KIARRDL 234 Query: 264 RDLPLVTIDGEDARDFDDAVYCEKKRGG-GWRLWVAIADVSYYVRPSTPLDREARNRGTS 322 + TID DA+DFDDA+ + + + IADV+ Y+ P + L + R + Sbjct: 235 TKELITTIDPRDAKDFDDALSVHPAKNKKHITIGIHIADVAAYIGPRSTLMTSIKKRAFT 294 Query: 323 VYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRLTGYKFYEAVMSSHARL 381 Y P +++PMLP+VL + CSL + +T G + ++ + + + RL Sbjct: 295 AYLPGRMLPMLPKVLVSKRCSLIENEVKPAHTVMITFDRESGEVINFERFHSTIKVRKRL 354 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREE-RGGISFESEEAKFIFNA 440 Y +V + + K ++ L+ L K REE I ++ E + + + Sbjct: 355 NYQEVQDYADANFSGDPWGKDVCKDVKTLYEFSHTLRKRREEIEQFIPLDAPEVRVMCDP 414 Query: 441 -ERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRS 499 I +++ +++ +++EE M+ AN A+ + P LFRIH +P E SF Sbjct: 415 VTMTINSLKKDSPSESKQMVEEFMLAANTVVAQELTSKAAPGLFRIHPEPDEEQAASFSV 474 Query: 500 VLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA 559 + G+ + L S+ P A + LR+M++A Y HFGL Sbjct: 475 DANTF-YGVSPGDITLRPNAIRFLNSIKGHPSAPAISMDFLRTMQRASYSSMKGLHFGLG 533 Query: 560 LQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMA 619 Y+HFTSPIRR DL +H+ + N + GG Y+ + + L + + Sbjct: 534 KNLYSHFTSPIRRLADLLVHQQLW-----------NMEDKGGPVYTKDRLDDLAEIINTR 582 Query: 620 ERRADEATRDVADWLKCDFMLD----QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS 675 E DEA R + K ++ +I+ V+ + + + V+ Sbjct: 583 EAVTDEAYRTTVNRFKLHYVEALEAGDSELECDALITRVSVKKMRLYIPHYGMYANVNFR 642 Query: 676 SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERK-IDFSLISSERAPRNV 734 LD+D++ D ++G +G T+ GD +EV++ + R+ + ++ +AP Sbjct: 643 DLDSDFFDADVEKGLVVGRRTGTTWSCGDTLEVKILGADFKMREFMVMPIVEGNKAPSQK 702 Query: 735 GKTAREKAKKGDAG 748 + R+K + Sbjct: 703 ARPERKKKEAPTER 716 >UniRef50_Q8TF46 DIS3-like exonuclease 1 n=22 Tax=Deuterostomia RepID=DI3L1_HUMAN Length = 1054 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 165/746 (22%), Positives = 281/746 (37%), Gaps = 102/746 (13%) Query: 79 PERLDLVKGTVIGHRDGY---GFLRVEGRKD-------DLYLSS-EQMKTCIHGDQVLAQ 127 + ++G + ++ F+R++G D+ + + IHGD V+ + Sbjct: 238 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 297 Query: 128 PLGADR-KGR----------------------REARIVRVLVPKTSQIVGRYF------- 157 L + KGR R+V +L V + Sbjct: 298 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 357 Query: 158 --TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 A V P D R+ I I Q + F VVV + + G V VLG Sbjct: 358 QGKNAQKILVTPWDYRIP-KIRISTQQAETLQ-DFRVVVRIDSWESTSVYPNGHFVRVLG 415 Query: 216 DNMGTGMAVDIALRTHEIP-YIWPQAVEQQVA----GLKEEVPEEAKAGRVDLR-DLPLV 269 + L + I + +A ++ +V E + R DLR + Sbjct: 416 RIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVF 475 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID + D DD + G L V IADV+++V P++ +D EAR R T+ Y + Sbjct: 476 SIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRR 535 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWH 388 MLP VLS LCSL VDR + + + + ++ S +L Y Sbjct: 536 YDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQE 595 Query: 389 ILQG---------------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +L G ++ + + LV + +L ++ + + R+ G + E E Sbjct: 596 LLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVE 655 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTE 492 + ++ I + Q + H+ + ECMILAN A+ + E AL R H P E Sbjct: 656 VCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQE 715 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY---- 548 + R G + + D + D +L++M ++M A+Y Sbjct: 716 FFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTG 775 Query: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 E H+GLAL Y HFTSPIRRY D+ +HR + ++K++ E G +S Sbjct: 776 SCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK-----KMEIKGNLFSN 830 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFK-----GVISSVTGFGFFV 661 +++ +L +H + + A + + + +C + D+ + GVI S+ G + Sbjct: 831 KDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLL 890 Query: 662 RLDDLFIDGLVHVSSLDNDYY----------------RFDQVGQRLMGESSGQTYRLGDR 705 + I G ++ + D RF + T+ L D Sbjct: 891 FIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDH 950 Query: 706 VEVRVE--AVNMDERKIDFSLISSER 729 V VR+ A I +IS++ Sbjct: 951 VTVRISIQASRCHSDTIRLEIISNKP 976 >UniRef50_Q8TF46-4 Isoform 4 of DIS3-like exonuclease 1 n=13 Tax=Tetrapoda RepID=Q8TF46-4 Length = 971 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 165/746 (22%), Positives = 281/746 (37%), Gaps = 102/746 (13%) Query: 79 PERLDLVKGTVIGHRDGY---GFLRVEGRKD-------DLYLSS-EQMKTCIHGDQVLAQ 127 + ++G + ++ F+R++G D+ + + IHGD V+ + Sbjct: 155 IKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDILIHGMKARNRSIHGDVVVVE 214 Query: 128 PLGADR-KGR----------------------REARIVRVLVPKTSQIVGRYF------- 157 L + KGR R+V +L V + Sbjct: 215 LLPKNEWKGRTVALCENDCDDKASGESPSEPMPTGRVVGILQKNWRDYVVTFPSKEEVQS 274 Query: 158 --TEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLG 215 A V P D R+ I I Q + F VVV + + G V VLG Sbjct: 275 QGKNAQKILVTPWDYRIP-KIRISTQQAETLQ-DFRVVVRIDSWESTSVYPNGHFVRVLG 332 Query: 216 DNMGTGMAVDIALRTHEIP-YIWPQAVEQQVA----GLKEEVPEEAKAGRVDLR-DLPLV 269 + L + I + +A ++ +V E + R DLR + Sbjct: 333 RIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVF 392 Query: 270 TIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQV 329 +ID + D DD + G L V IADV+++V P++ +D EAR R T+ Y + Sbjct: 393 SIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRR 452 Query: 330 IPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWH 388 MLP VLS LCSL VDR + + + + ++ S +L Y Sbjct: 453 YDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQE 512 Query: 389 ILQG---------------DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE 433 +L G ++ + + LV + +L ++ + + R+ G + E E Sbjct: 513 LLDGNLSVVDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVE 572 Query: 434 AKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFV-EKAKEPALFRIHDKPSTE 492 + ++ I + Q + H+ + ECMILAN A+ + E AL R H P E Sbjct: 573 VCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQE 632 Query: 493 AITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY---- 548 + R G + + D + D +L++M ++M A+Y Sbjct: 633 FFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTG 692 Query: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606 E H+GLAL Y HFTSPIRRY D+ +HR + ++K++ E G +S Sbjct: 693 SCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDK-----KMEIKGNLFSN 747 Query: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFK-----GVISSVTGFGFFV 661 +++ +L +H + + A + + + +C + D+ + GVI S+ G + Sbjct: 748 KDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLL 807 Query: 662 RLDDLFIDGLVHVSSLDNDYY----------------RFDQVGQRLMGESSGQTYRLGDR 705 + I G ++ + D RF + T+ L D Sbjct: 808 FIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGESVTFHLFDH 867 Query: 706 VEVRVE--AVNMDERKIDFSLISSER 729 V VR+ A I +IS++ Sbjct: 868 VTVRISIQASRCHSDTIRLEIISNKP 893 >UniRef50_A2FUQ4 RNB-like protein n=1 Tax=Trichomonas vaginalis RepID=A2FUQ4_TRIVA Length = 863 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 165/674 (24%), Positives = 291/674 (43%), Gaps = 44/674 (6%) Query: 77 ALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLS-SEQMKTCIHGDQVLAQPLGADR-- 133 L + + G + + + K+ + L+ ++ + + GD++ + Sbjct: 211 KLYKEGKVTIGYFSAMQRQHDQGELRNDKETILLNDAKSVNRALDGDKIAVITNPESQWV 270 Query: 134 KGRREARIVRVLVPKTSQIVGRYFTEA------GVGFVVPDDSRLSFDILIPPDQIMGAR 187 G ++V +L K+ I G VVP L I I Q+ Sbjct: 271 GGYPTGKVVSILSRKSRVICGTVLPPKVQTNDWQSLLVVPQQENLP-KIRIRSRQVQEL- 328 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVA 246 +G V V + G + +G ++ L T+EIP+ + AV + Sbjct: 329 IGMRVHVAIDSWAINSKYPSGHYISTIGQAGNLQAESEVILMTNEIPHDAFSDAVLNCLP 388 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + E R+DLRD + +ID D DDA++ + + V IADVS++V Sbjct: 389 PKDFQPTPEEVKRRMDLRDRCVCSIDPPGCTDIDDALHYKDIDEETCEIGVHIADVSFFV 448 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS-SKGRL 365 R T +D EAR+RGT+VY + I MLP +LS LCS+ ++RL ++ Sbjct: 449 REGTAIDLEARDRGTTVYLVEKRIHMLPSLLSEDLCSIRGGIERLAFSVVAIMNKKTAET 508 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERG 425 KF ++++ S A L+Y + I++ D E L K + L L K+++K R + G Sbjct: 509 IDVKFGKSIIKSRAALSYGRAQEIVEDQNDQSE----LAKGIRGLLALSKIMNKKRMDDG 564 Query: 426 GISFESEEAKFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALF 483 ++ S + F ++E E Q + + L+EE M+ ANI A+ + + K+ A+ Sbjct: 565 ALTLSSPQLHFTLDSETAEPLSGELYQHLEVNSLVEEFMLYANIEVAKKIYETFKQSAML 624 Query: 484 RIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL-ESVADRPDAEMLQTMLLRS 542 R H+ P L G++L + + + E V D + +++ M R Sbjct: 625 RRHESPIAARFDFLNRALKRFGVQLNPDTNKSLVETLDGVGEKVKDLDN--IVRIMTTRC 682 Query: 543 MKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M+ A Y EN H+GLA+ Y HFTSPIRRY DL +HR + + ++ Sbjct: 683 MQFAKYFAAGTQSYENFRHYGLAMPIYTHFTSPIRRYADLIVHRQLAAAIGYDKATDMLA 742 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 ++ M + ++ + + A +A R + + + G + +G + + Sbjct: 743 SKLM--------MQAVAENLNFRHKMAQDAGRSSSQLFIMEMLRRTPGKIEEGKVIKIKP 794 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVR--VEAVN 714 F + L+ ++G VHV D + + +++ + L E G+ + D+V VR V +N Sbjct: 795 TVFVILLEQYGVEGHVHV---DGEKWIYNETEESL--EKDGKRICIFDKVRVRVNVTPIN 849 Query: 715 MDER-KIDFSLISS 727 M R ++D LI Sbjct: 850 MHGRSRLDLELIEE 863 >UniRef50_C5KND9 Exosome complex exonuclease rrp44, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KND9_9ALVE Length = 982 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 157/775 (20%), Positives = 282/775 (36%), Gaps = 120/775 (15%) Query: 80 ERLDLVKGTVIGH----RDGYGFLRVEGRKDDLY--LSSE-QMKTCIHGDQVLAQP---- 128 + L +G + + G + V + +++ + + + GD V + Sbjct: 213 QNGTLHQGILRCSVSSWQRGK-VVVVSSKNKEIHLMIKGRFNINRAVDGDVVAVEEIHTP 271 Query: 129 ------------------------------------LGADRKGRREARIVRVLVPKTSQI 152 +E R+V ++ + Sbjct: 272 TSTSSNDDGDDDDNVAVLPTSGAEAMEERVLEEESTTPEGGIIEKEGRVVGIIKRNWREY 331 Query: 153 VGRYFT-----------------------EAGVGFVVPDDSRLSFDILIPPDQIMGARMG 189 G +P + R+ I I Sbjct: 332 AGTLRPIQQEEEEQPQQGDKQHGGGMIGYSKIERIFIPANPRIPN-IRIVTKHSNDL-DN 389 Query: 190 FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE-IPYIWPQAVEQQVAGL 248 + V + G +LG + L H I + V + + Sbjct: 390 MRICVVMDTWDRTSRLPQGHWSRILGRCGERDTESSVILHEHNVITRDFSDDVMRCLPPK 449 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 + EE + R+DLR++ + +ID +D DDA+ CE G WR+ V IADV+++V P Sbjct: 450 DFQPDEEEISRRLDLRNVTVCSIDPPGCKDIDDALSCEVLDNGNWRIGVHIADVTHFVHP 509 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS---SKGR- 364 +T +D+EA R T+VY + MLP +L+ LCSL DRLC G Sbjct: 510 NTAIDKEAAERCTTVYLVERRTDMLPSLLTTDLCSLVGGKDRLCFSVLWEFQLNKKNGNE 569 Query: 365 ----LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + +F++A+++S+A L+Y + + D L + + L ++ + Sbjct: 570 EVLKIVNTQFHKAIINSNAALSYAEAQARIDDKNDNS----DLTQSIRRLLKAAMIIRRK 625 Query: 421 REERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAK 478 R G + S+E +F ++E + + D ++L+EE M+LAN S A ++ Sbjct: 626 RMAGGALELASQEVRFELDSETSDPTDVAEYTMKDTNRLVEEFMLLANTSVAEQILKHFP 685 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLE--LPGGNKPEPRDYAELLESVADRPDAEMLQ 536 ++ R H P + + S RS+L + G++ G N+ R + D +++ Sbjct: 686 SNSVLRRHPPPKEQQLKSLRSLLEKQGVKGFQFGSNRELSRSLNTVCNKKDDPYFNRLVR 745 Query: 537 TMLLRSMKQAIY----DPEN--RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 M R+M QA Y + EN H+GLA+ Y HFTSPIRRY D+ +HR + L Sbjct: 746 IMTTRTMNQAQYFCTGEVENGMFSHYGLAMGLYTHFTSPIRRYADILVHRLLMASLGIRP 805 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 +++ + R A A R A+ + V Sbjct: 806 --------LPPQLNDKTAVIEQCDKINFRHRNAQFAGRASAELHTYLYFNKNGPCTADAV 857 Query: 651 ISSV---------TGFGFFVRLDDLFIDGLV--HVSSLDNDYYRFDQVGQRLMGESSGQT 699 I+ V G V + IDG+ ++ D+D + D+ + + S T Sbjct: 858 ITRVRARIGGLRRGGGSLQVVVPRYGIDGVCKLDDNNKDDDEWICDEDKMIAVNDKSKIT 917 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKR 754 + D ++V++ A N DF + + ++ +A +K + Sbjct: 918 LAVFDHIQVKIMADNT-----DFRFKTVMTFLEKSKSNEIDTFEEAEANRKKVDK 967 >UniRef50_Q8DHS2 Protein conferring resistance to acetazolamide n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DHS2_THEEB Length = 754 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 179/751 (23%), Positives = 309/751 (41%), Gaps = 44/751 (5%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTV 89 +K + L +L + E L L A+ER G L+ R Y L++ + Sbjct: 13 SEDKFVAPKVLEKKLGCDDPESQRELEIALDALERIGLLIKER-GKYRRASDEGLIEARL 71 Query: 90 IGHRDGYGFLRVE-GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARIVRVLVP 147 G+ F + +D+++ Q+ T +GD+VL + R+ + E + +L Sbjct: 72 RCSSKGFCFAIQDAEGAEDIFVREHQLSTAWNGDRVLVRVTREGRRKKSPEGEVKLILER 131 Query: 148 KTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQI---MGARMGFVVVVELTQRPTRRT 204 ++ R P D RL F+I + P+ + + + +V V + + P Sbjct: 132 GNPSVIARVKQTEDGFRATPLDDRLLFEIALEPNDLVPDLSTVVDQLVHVHIRRYPLGGY 191 Query: 205 KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLR 264 G+I ++LG + + +D+ H + + A+ A L ++ + R DLR Sbjct: 192 LPTGEIGQILGSDAQSAPILDLICCKHNLVRQFNPALRTAAATLNAQLETLDFSDRQDLR 251 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 +L +T+ ++ A + W+L + I+DV + LDR AR +G S+ Sbjct: 252 ELVTITLVAPG-QEPQVAFSLDGLGPDLWQLGIHISDVGGLLPRDELLDRTARRQGMSLA 310 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 P +P+LP+ L L P DR + + +++ G + Y+ Y + + A +T Sbjct: 311 TPELSLPLLPQEL--ETLRLLPGGDRAAISLLIVLNTAGEVQSYRIYRSCIRVDACVTSE 368 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEE-AKFIFNAERR 443 +V L + L L +L + + R+ RG I E + + E Sbjct: 369 QVAATLALGDSSGD-------WLRALIHLANAVSQRRQARGSIEVTPAEALRLAYADEGL 421 Query: 444 IERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAE 503 I + L+ ILAN R + K PAL+R P + F + Sbjct: 422 APAIFLPKVTPWTSLV----ILANELLGRHLAKLGVPALYRTQPVPELYGVQDFLKLCQN 477 Query: 504 LGLEL--PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLA-L 560 L L L ++ PRDY + +A A +LQ +LL +K A P HFGLA Sbjct: 478 LNLPLSLDHPSQVTPRDYQRFMAQLATSDLAALLQELLLDKLKPASDSPVVLTHFGLATA 537 Query: 561 QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML---------- 610 + Y HF SP++RY D+ R + LL + + +G + + Sbjct: 538 EGYGHFCSPLQRYTDIVNQRILHLLLTEGRDRRGPRAKERVNLGDSSCLEQVNWTVFTTD 597 Query: 611 ----------QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF 660 +L H ER+ A +D+ + + +G V G+I+ V +GFF Sbjct: 598 IQREVDTLVKELAPHLQERERQTYTAWKDLVGLQRVRQVQACIGEVRPGIITGVQSYGFF 657 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 V L D ++GLVHVSSL +D+Y + Q L G + YRLGDRVEV ++ V+ +++ Sbjct: 658 VELLDFNVEGLVHVSSLKDDWYEYRAHAQTLTGRRNRLRYRLGDRVEVLIKNVDSYRQQV 717 Query: 721 DFSLISSERAPRNVGKTAREKAKKGDAGKKG 751 D ++S + + + Sbjct: 718 DLGVMSGGSQATEEDLNGSSDSGEPLTPPED 748 >UniRef50_Q2S7B5 Exoribonuclease R n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7B5_HAHCH Length = 657 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 176/663 (26%), Positives = 311/663 (46%), Gaps = 25/663 (3%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M L ++ L + +GTV G +GF ++ ++ +L+ ++M+ G Sbjct: 1 MLNSDALTQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRE-CFLNPDEMQKVFPG 59 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++L + D KGR A++V+ + + VGRYFT FV PD ++ I IPP Sbjct: 60 DRILVEV-SQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPK 118 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 + A + +V+ + Q P K ++V+++G +G+ V+ L + + ++ Sbjct: 119 KRQQAHVNDLVLCRVLQHPFPEGKPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASI 178 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 + ++ R DLR+ P VTID +D DDA++ + GGW L AIAD Sbjct: 179 NE---AELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATARPEGGWELLAAIAD 235 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 S + +D+ A+ G+S YF + +PMLP L+N CSL DRL +VC M + + Sbjct: 236 PSTLIPEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDA 295 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G ++ Y EA + A LTY +V L Y L+ L+ + L R Sbjct: 296 DGAISSYSIEEAAIRCAANLTYEEVATALASGDASAHAYDAT---LQALNEVKAALASHR 352 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 ++ + + + + +++ I + + AH ++EE M+ AN AA F+++ E + Sbjct: 353 RAHALVNEDRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTERS 412 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L+ H E + + +++E + + + + ++ + P ++ + R Sbjct: 413 LYTSHSGFRPERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANR 472 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 + + + HFG+ L Y FTSPIR+Y DL++HR IK +L ++ H N Sbjct: 473 LLARGALSDQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKSVLKNQKPHTLN------ 526 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFV 661 + + R A + WLKC++ +G F GV+ TG GF Sbjct: 527 --------AKAILQLQESLRAGRSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQA 578 Query: 662 RLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID 721 RLD+ I+G+V++ +L + +RFD + GE + +RL V+V + AV+M+++ I Sbjct: 579 RLDENGIEGMVNLGAL-QEKFRFDGTYFQHTGEH--RQFRLEQPVKVTISAVDMEKKLIQ 635 Query: 722 FSL 724 L Sbjct: 636 MEL 638 >UniRef50_Q04NY8 Exoribonuclease R n=6 Tax=Leptospira RepID=Q04NY8_LEPBJ Length = 755 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 207/759 (27%), Positives = 335/759 (44%), Gaps = 71/759 (9%) Query: 6 FQEREAEKYANPIPSREFILEHLTKREKPA-SRDEL-AVELHIEGEEQLEGLRR------ 57 R +E + R IL +L R +L A L E + R Sbjct: 33 RFARRSEGFPESEIGR-KILRYLRSRAGSVIQFKDLTAKILKEENQNSYGKKREKWQFEE 91 Query: 58 -------RLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYL 110 L+ +E +G + ++ L + GT+ + G GF+++ + +++ Sbjct: 92 REREITEILQILEAEGLIELEKKN--ILVNSNQKLLGTISTSKKGDGFVKLPSGME-VFV 148 Query: 111 SSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDS 170 + +++ I GD V QP +KGR E + ++L V+ D Sbjct: 149 PGQYVQSAIQGDLVEVQPNAIGKKGRLEGEVTKILRRGRDLY---------RMIVIEKDP 199 Query: 171 RLSFDILIPPDQIMGA----------------RMGFVVVVELTQRPTRRTKAVGKIVEVL 214 + F L+ D ++G V++V+L + V+ L Sbjct: 200 KFIFGKLLDIDGEEKEGYLLRKTILMNLQDEIQLGDVLIVKLREETEHERNLYE--VQFL 257 Query: 215 GDNMGTGMAVDIA--LRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTID 272 T +D+ L + ++P+ + + +E + RVDLR+L +TID Sbjct: 258 RFESDTKEDLDLMRMLMKYNYSILYPENIVLNLPEEVDESTVDDWGSRVDLRNLKCITID 317 Query: 273 GEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPM 332 GE ++DFDDA+ +++ R +V +ADVSYYVR T LD EA NR TSVY S+V+PM Sbjct: 318 GEYSKDFDDAISFVEEKS-RIRFYVHVADVSYYVRLGTDLDEEAYNRATSVYLGSRVVPM 376 Query: 333 LPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVW-HILQ 391 LP LS LCSL +RL EM KG++T K+Y++V++ R TY + IL Sbjct: 377 LPPDLSENLCSLVAGKNRLAFTVEMEADWKGKITHVKYYKSVINVAERYTYNRAESEILS 436 Query: 392 GDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQ 451 GD + ++ K L R E G + +E K + ++E + I Sbjct: 437 GDPG---------NWIFRMNEFAKALRARRIEDGRVDLNLKENKVVTDSEHNVVEISVQD 487 Query: 452 RNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGG 511 R AH LIEE M+ ANI A + K K P L+RIH+ + E + S + L G+++ Sbjct: 488 RLQAHILIEEFMLSANIKIAESIRKKKHPTLYRIHEPMNEEKLESLNAFLQLNGIKILLK 547 Query: 512 NKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIR 571 + +L+ + +P + LLR+ QA Y E GH+GL + Y HFTSPIR Sbjct: 548 DS-SYEAIRAVLKELEGKPAERLFNMFLLRTFMQAYYSGEYLGHWGLGFEDYCHFTSPIR 606 Query: 572 RYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVA 631 RYPDL HR ++ +L ++ Y EE++ LG HCS ER+A +A RD Sbjct: 607 RYPDLVCHRVLQQILLGKKP-----------LYGPEEVVTLGLHCSHQERKASDAERDYY 655 Query: 632 DWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRL 691 C ++ F I+ FV L++ +D + S ++ + Sbjct: 656 KLKACRYLEKTGIKEFSATITGCKPHLIFVDLENPSVDACLISSEFTDEGEIRLETDFSF 715 Query: 692 MGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 + + Y LGD++EV ++ V+ +E KI + ++ Sbjct: 716 YSKKYSKIYTLGDKIEVELDRVDYEEIKIFVKMKKFQKK 754 >UniRef50_A0CC06 Chromosome undetermined scaffold_166, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CC06_PARTE Length = 897 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 149/693 (21%), Positives = 281/693 (40%), Gaps = 89/693 (12%) Query: 79 PERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-- 136 ++ L +G + R+ R+ ++ L + Q +HGD+V + L D+ + Sbjct: 215 IKQGLLFEGRISIDRNNIKLARIFVKQFQLEIKINQQNRVLHGDRVAVELLSEDQWEQQQ 274 Query: 137 -----------------------------------------------REARIVRVLVPKT 149 ++V VL Sbjct: 275 KQKEIKFDEDDDDDGNNNTHTNDTSHEIMSTSHLQNLFRKVQSQNLVPYGKVVSVLQRTE 334 Query: 150 SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGK 209 G VP D R I + V+ P K + K Sbjct: 335 RHFCGHVENN----IFVPADGRYPN--FILKHSKYDTLQDKKIQVQFVDWPVWSDKPLCK 388 Query: 210 IVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVAGLKEE--VPEEAKAGRVDLRDL 266 + +VLG + ++ L H++ + V + ++ + E+ R+DLRD+ Sbjct: 389 LKKVLGKAGDMYIEGNVILLEHQVEIREFSHQVLACLPIEGDKYRISEQEIKRRMDLRDI 448 Query: 267 PLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFP 326 + +ID +D DD ++C + + + V IADVS++V+P + +D+EA +R T+VY Sbjct: 449 LVCSIDPVGCKDIDDTLHCRRLENNLYEVGVHIADVSHFVKPDSAIDKEAAHRCTTVYLV 508 Query: 327 SQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV 386 + MLP++L+ LCSL VDRL + + + KF ++V+ S A L Y + Sbjct: 509 DRRTDMLPKLLTENLCSLVSNVDRLAFSVIWIMDDQANIKDVKFGKSVIRSVASLHYQQA 568 Query: 387 WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER-RIE 445 ++ D + L + + L+ L K L + R ++G +S S + KF F+ E Sbjct: 569 QEMIDNPNDNSQ----LTQGIRLLNMLAKKLKQLRTDQGALSLASNQVKFSFDDETHNPS 624 Query: 446 RIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAEL 504 + Q D + L+EE M+LAN S A + +++ ++ R H +P + + + ++ +L Sbjct: 625 DVRMYQLYDTNSLVEEFMLLANCSVANQILQRFPSISVLRRHQEPKMKQLKELQILMNDL 684 Query: 505 GLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGL 558 G + + + ++ D ++++ + R M +A+Y D H+GL Sbjct: 685 GYQFSFDTSKLLSESLDQIQRPNDSFFNKLIRMITTRCMNEALYVCTADVDYPELYHYGL 744 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSM 618 A + Y HFTSPIRRY D+ +HR + + E + M ++ +M Sbjct: 745 AAELYTHFTSPIRRYADVLVHRLLAASIDLE--------SLPPSMSNKIRMTRICDKLNM 796 Query: 619 AERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLD 678 R A A+R +D+ F ++ + + +I+ + V + ++G + +D Sbjct: 797 RHRMARFASRASSDYHTYLFFKNRPQQIDQAIITGILTDKVTVMIPRYVLEGTIDAQIID 856 Query: 679 NDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 R+ G YR+ D ++V + Sbjct: 857 -----------RMNIIIQGTRYRIFDYIQVEIS 878 >UniRef50_A7S1B6 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7S1B6_NEMVE Length = 766 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 159/737 (21%), Positives = 273/737 (37%), Gaps = 118/737 (16%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG- 135 +R +L+KG + + + ++ V G+K D+YL + GD V ++ Sbjct: 39 KRGELLKGALRISKRNFEMAWVSVAGQKRDVYLEGVLARNRALDGDIVALNISPRNKWKL 98 Query: 136 ----------------------------------------------RREARIVRVLVPKT 149 ++ A +V ++ K Sbjct: 99 MKHEYDAHGASHEGNKTPSKGGTTPHTPESSKNKQRKNEEIPDAYLQQTAHVVYIIEKKH 158 Query: 150 SQIV-GRYFTEA------GVGFVVPDDSRLSFDILIPPD-------QIMGARMGFVVVVE 195 ++ G G P DSRL + IP + V Sbjct: 159 TRAASGNLKPFQYNQGDVPDGLFSPSDSRLPR-MRIPHAKCPLGFFDRPQDFASTLFVGR 217 Query: 196 LTQRPTR----RTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGL-K 249 +T+ P A G+I LG+ + I P +P + Sbjct: 218 ITEWPENAPMDNFFATGEISRSLGEAGEIEPETQGIFFEYGIDPGPFPDEALDCLPKETP 277 Query: 250 EEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPS 309 +PE A R D RD + TID ARD DDA++C++ G + V IADVS++V+ Sbjct: 278 WSIPETEFAHRRDFRDECVFTIDPLTARDLDDALHCKRLSDGLIEVGVHIADVSFFVKTG 337 Query: 310 TPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYK 369 TPLD A+ R TS Y V+PMLP L LCSLNP DRL ++ +G + Sbjct: 338 TPLDDIAQERATSTYMVQTVVPMLPRRLCEELCSLNPDEDRLTFSVVWIMTDQGEIKSDW 397 Query: 370 FYEAVMSSHARLTYTKVWHILQGDQDLREQYA-----------PLVKHLEELHNLYKVLD 418 ++ S ++ Y ++ +VK + L + + L Sbjct: 398 KGRGIIRSRVKMAYEHAQEMIDKPNKKWSDSELPPIAEGTDVSEIVKRVNLLAKIARQLR 457 Query: 419 KAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEK- 476 + R E G + + + +F + E Q+ +++KLIEE M+LAN++ A + K Sbjct: 458 RNRFENGALRLDQVKLQFDLDKETGMPIGYHVYQQRESNKLIEEFMLLANMTVAHHIYKA 517 Query: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ 536 + AL R H KP + + + LG++ + + L + + E+L Sbjct: 518 FPDMALLRRHPKPHEKQMEDLLELCRNLGIKYNANSSKSIQVS--LAQFPSGSAQHEILV 575 Query: 537 TMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQ 590 + ++ MK A+Y + E GH+ L++ Y HFTSPIRRY D+ +HR + L + Sbjct: 576 QLTMKPMKNALYFCAGTVEEEEYGHYALSVPLYTHFTSPIRRYADVIVHRLLAASLELAE 635 Query: 591 GHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 ++ + HC+ + A A ++ F+ + G Sbjct: 636 P----------LDKDAVDVDSIAGHCNDCKLAAKTAGELSSELFFAIFVRECGPLEEDGY 685 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHVSSLDN--DYYRFDQVGQ-----RLM---------GE 694 + + F V + L + ++ Y +D+ Q L+ G+ Sbjct: 686 VLGIMDMSFDVFVPALGVTKRIYCKFCPGVKRYVPYDRKEQVQPEITLVWATGTEKKPGK 745 Query: 695 SSGQTYRLGDRVEVRVE 711 Q + +V V + Sbjct: 746 DVKQVLHIFSKVHVILT 762 >UniRef50_Q4UH40 Exosome complex exonuclease rrp44, putative n=2 Tax=Theileria RepID=Q4UH40_THEAN Length = 955 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 161/724 (22%), Positives = 284/724 (39%), Gaps = 112/724 (15%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDL--YLSSEQMKTCIHGDQVLAQPLGADRKG 135 + L GT+ + Y G++ + + + + + GDQV+ Q + Sbjct: 251 DSGSLFSGTLHMYIGSYQRGYVSCGNHEFKVNSLI---HLNRALDGDQVIVQLIDTPNNT 307 Query: 136 ------------------------------------------------RREARIVRVLVP 147 +R +IV ++ Sbjct: 308 VDNTTDNVHYSDNGIDNNSAGLEEQVGTENDDSNLIYGYLEPEQYKVIKRYCKIVSIVNR 367 Query: 148 KTSQIVGRYFTEAGVG-------FVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + G G VP D+R+ F I I + +VVE+ Sbjct: 368 MRKEFCGSLLPIEGEVGDGYVQRLFVPVDARIPF-ISIETRRSKELENN-RIVVEVDSWD 425 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE-IPYIWP-----------------QAVE 242 + G E+LG + + LR H+ I + + E Sbjct: 426 RFSKRPNGHWTEILGPIDDRNVESTVILREHQVITEDFSLQSYRHLGLITSSLVDTSSTE 485 Query: 243 QQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + ++ E GRVD RD + ++D +D DDA+ C++ G + + V IADV Sbjct: 486 KDEDKSDIKITPELLGGRVDYRDEVVFSVDPPGCKDIDDALGCKRLSNGNFEVSVHIADV 545 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 +Y+V + LD+EA R T+VY + MLP++L+ LCSL V+RL + Sbjct: 546 TYFVPEGSNLDKEASERCTTVYLVDRRTDMLPKLLTTNLCSLMSDVNRLTFSVYWEMDMN 605 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKARE 422 G + KF ++V+ S LTY + ++ + L L+NL K+L K R Sbjct: 606 GVILATKFSKSVIKSRRSLTYQQAQEMI-----DSSSNDEVSVSLRNLNNLSKILRKQRI 660 Query: 423 ERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPA 481 ERG + ES E KF F+ ++ +E + + ++++EE M+LANIS A + E+ + + Sbjct: 661 ERGAVELESSEVKFEFD-MSKVLNLESYKTYETNQMVEEFMLLANISVATKIFERFPKCS 719 Query: 482 LFRIHDKPSTEAITSFRSVLAELGL-ELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL 540 L R+H P E + L + + GN + + E++++ + + + Sbjct: 720 LLRVHPPPVEEKLNELNRTLQQQNITSFKYGNSKQLNESLEIVKNEKNDKFTTATKILTT 779 Query: 541 RSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG 594 R+M QA+Y D + H+GL + Y HFTSPIRRY D+ +HR + L + Sbjct: 780 RTMSQALYRNSNDLDEDEFKHYGLCCEYYTHFTSPIRRYADVIVHRLLASALDLAPLNVN 839 Query: 595 NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSV 654 + + R A +R+ + G++ + Sbjct: 840 FIQS----------LSGQCDLLNKRHRNAQWCSRESDKMFSYLYFKQMGDVECNGIVLDI 889 Query: 655 TGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVN 714 V + I+ + +V +Y FD+V + L+ + +G ++ D+V+VR+ N Sbjct: 890 NEDRVVVLTLEYGIEAVANV-----EYKSFDKVNKVLV-DLAGNVLKVFDQVKVRLYTCN 943 Query: 715 MDER 718 R Sbjct: 944 KHFR 947 >UniRef50_D0A7T6 Exosome complex exonuclease RRP44p homologue, putative n=4 Tax=Trypanosoma RepID=D0A7T6_TRYBG Length = 972 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 163/738 (22%), Positives = 275/738 (37%), Gaps = 114/738 (15%) Query: 73 RQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLG- 130 R + E G + G G+ F + + L + IHGD V + L Sbjct: 256 RGKLRVSETNCFF-GEIRGQWKGHNF-------ERVLLPGRTNLNRAIHGDIVTVELLPV 307 Query: 131 ------------------------ADRKGR-----------------REARIVRVLVPKT 149 + GR R+V + Sbjct: 308 ASWRPLRGAKPTEEMNDTGAGGDDHENSGREGIGEESEGAALARGYTPVGRVVGITTMNR 367 Query: 150 SQIVGRYFTEAGV--------------GFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 G E P D+R+ I I + + + V Sbjct: 368 RPFCGSIDVEELNKLADTLDTLTGTVSVLFQPKDNRIPR-IRITTAHLGDLK-DKRLSVI 425 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKEEVPE 254 + + VG VEVLG + L ++IP+ + +AV + + V E Sbjct: 426 IDDWGEHSSFPVGHYVEVLGTIGDKDTEAKVILLENDIPHYDFSEAVYDCLPKGEWNVTE 485 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 E R+DLRDL +V++D RD DDA++C + G + V IADV+++++ T +D Sbjct: 486 EELGNRLDLRDLCVVSVDPLGCRDIDDALHCRRVNGNHLEVGVHIADVTHFLKEGTAMDE 545 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA R TSVY + I MLP++L+ LCS+ DR + F + V Sbjct: 546 EAAKRSTSVYLVDRRINMLPQLLTENLCSIVADEDRYAFSIMWEFDENYSVVREFFGKTV 605 Query: 375 MSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEA 434 + S A L Y ++ +D E L L L + K RE+ G + S+E Sbjct: 606 IRSRAALYYGDAQRMIDDPEDESEA----AVSLRYLMQLSRHFRKRREKDGALFLCSQEF 661 Query: 435 KFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAARF-VEKAKEPALFRIHDKPSTE 492 KF + + ++ Q D++ +IEE M+ AN +AAR L R H P+ Sbjct: 662 KFKVDNDHVNPTDMQAYQTFDSNSMIEEWMLFANAAAARRVYASFPRWTLLRRHQAPAEN 721 Query: 493 AITSFRSVL-AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 A + + ++G++L + E +D +++T++ R ++QA Y Sbjct: 722 AFDTLNEAIRRKIGVKLDDTTSLALNESLEKCVDPSDPYFNRLIRTLVTRCLRQAQYFSS 781 Query: 549 ---DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 + HFGLA+ Y HFTSPIRRY D+ +HR + L + H Sbjct: 782 SEVSKDEFHHFGLAMPIYTHFTSPIRRYADVIVHRQLAAALG--------IMDVSEAHMV 833 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV---FKGVISSVTGFGFFVR 662 +M L + + +A +A RD + ++ + G + ++ FV Sbjct: 834 SVKMEALASNLNYRHEQAQKAGRDSQNLFTGFYLRNFANQEIPSEDGYVVKLSETHVFVL 893 Query: 663 LDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE---AVNMDERK 719 + +G + +L + L D+V+V +E ++ Sbjct: 894 VPKYGQEGKIAKETLV-------------------RVPNLLDKVKVGIEVRQRGDVLRAS 934 Query: 720 IDFSLISSERAPRNVGKT 737 + FS+I + +V + Sbjct: 935 LVFSIIGLMKGCEDVSEP 952 >UniRef50_D1AY08 VacB and RNase II family 3'-5' exoribonuclease n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY08_STRM9 Length = 619 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 165/639 (25%), Positives = 299/639 (46%), Gaps = 26/639 (4%) Query: 82 LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARI 141 + + I F + + + + GD V+ + + + R ++ Sbjct: 2 NKIFESKFICKNKRIAFAYTDNNEK-VLIRDINFNNAFDGDTVIVEIIDNE---RLIGKV 57 Query: 142 VRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 +++ + S G +++ + S I+ + + + G ++ + Sbjct: 58 NKIVKRQDSPYFGNVILCKRNKYIIRLNR--SDLIVTTTTKKINIKHGDILSFNIDYTTL 115 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 + I+ G+ + ++ L I + ++++V ++ E RV Sbjct: 116 NKDDIKVNILNNFGNINNSDNILNSLLDASNISKGFLNEIKKEVVEIRRPNVSEELKYRV 175 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLR +TID A+D DDA+Y EK+ + L+V+IADVSY+V+ + LD EA RG Sbjct: 176 DLRHQKTITIDDISAKDLDDAIYLEKEEN-HYILYVSIADVSYFVKEYSKLDFEAAKRGN 234 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 S+Y QVIPMLP+ LSN LCSLNP D+L ++ G+L F+++++ SH RL Sbjct: 235 SIYLAEQVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIESDFFKSIIKSHHRL 294 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 YT V + + L ++ L K+L K + ++G I+F E K I + Sbjct: 295 NYTDVNKMFDNNDKSYPI-------LWDMLELSKLLRKQKNKKGMINFNIPEIKLILDEN 347 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 I+ I + + +LIE M+ AN + A ++ PA++R+H+ P + + S L Sbjct: 348 GDIKEISKRISGLSQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLNKKL 407 Query: 502 AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ 561 LG + P A++++ ++ ++ ++ +L++MK+A Y EN+GHFGLAL Sbjct: 408 NILGYNINNVMDIHPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGLALD 467 Query: 562 SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAER 621 +Y HFTSPIRRY DL +HR +++ L ++ + EE + +H S ER Sbjct: 468 NYLHFTSPIRRYSDLIVHRMLQFTLNNKKISTKYIDKK------KEEYKLIAEHISKTER 521 Query: 622 RADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 A+ +D D+M + VF+ IS + F++LD+L S Sbjct: 522 VAERLEKDSIKLKLLDYMKKHLNEVFEARISGIIRGKIFLQLDNLIETVFYDNISSK--- 578 Query: 682 YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 Y D L+ ++ G + +GD+V++++ ++ + +I Sbjct: 579 YIIDD---ALLIDNKGNKFNIGDKVKIKIIKLDYERIEI 614 >UniRef50_A4S559 Predicted protein n=3 Tax=Mamiellales RepID=A4S559_OSTLU Length = 962 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 154/718 (21%), Positives = 254/718 (35%), Gaps = 104/718 (14%) Query: 81 RLDLVKGTVIGHRDG--YGFLRVEGRKDDLYLSSEQ-MKTCIHGDQVLAQPLGADRKGRR 137 L+KG V R + EG + + LS M I GD V + L + R Sbjct: 234 SGKLIKGGVRTSRYNPFEAHVMNEGTGEGVLLSGRAAMNRAIDGDLVAVEILPESQWIRP 293 Query: 138 ---------------------------------------------------EARIVRVLV 146 ++V ++ Sbjct: 294 GGMIITGTAEEDKETSSADVDAKDDAGGLAPETADETDVAVAATKASGVVPTGKVVGIIR 353 Query: 147 PKTSQ--IVGRYFTEAG-------------VGFVVPDDSRLSFDILIPPDQIMGARMGFV 191 + VP D R I I Q+ G + Sbjct: 354 RNWRERGYAASVDMGRDGKGPTAAGGGFASRVLCVPSDRRFP-KIRIQTRQLEGL-LDQR 411 Query: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGLKE 250 +VV + P G V+ LG L +++ + AV V L Sbjct: 412 IVVVIDDWPADSMYPEGHYVKSLGLIGSVDAETQALLLENDVDDRPFAPAVYACVPALPW 471 Query: 251 EVPEEAKA--GRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 +V ++ A GR DLRDL + ++D +D DDA+ + V IADV+ ++ P Sbjct: 472 KVTDDHLAEPGREDLRDLLVCSVDPPGCKDIDDALSARDIDDERIEIGVHIADVTSFLFP 531 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG----R 364 T +D EA RGT+ Y + + MLP L+ +CSL +RL V Sbjct: 532 DTAMDEEAARRGTTTYLVQRRLDMLPGALTTDICSLVGGQERLAFSAFWIVQKSTMLPDE 591 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 +F ++V+ S A LTY + + D L L L ++ + L K R Sbjct: 592 TVKPRFTKSVIKSAAALTYEQAQTRI----DDASLNDDLTLSLRRLRDVARQLRKRRMAN 647 Query: 425 GGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPAL 482 G ++ S E +F + + + + ++++EE M+LAN+S A ++ A+ Sbjct: 648 GALTLASPEVRFEMDQQSSDPLDVGMYVTRETNQMVEEMMLLANVSTAERILQAYPAAAM 707 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 R H P + G+++ + + D +L+ R Sbjct: 708 LRRHPIPEQKMFEPLLKAAKACGVDIDTQSNRTLAASLDAAVRPEDAYFNTLLRLQATRC 767 Query: 543 MKQAIYDPE------NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M QA+Y R H+GLA+ Y HFTSPIRRY D+ +HR + + H+ Sbjct: 768 MSQAVYCSSGQYAGPERMHYGLAMPLYTHFTSPIRRYADVIVHRLLSAAIGLCPRHKSLE 827 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 + + + C++ R + +A R + F + V + V Sbjct: 828 --------DSDHVKSVADVCNVRHRNSQQAGRASVELHTLVFFRKR-KIVADARVFKVRA 878 Query: 657 FGFFVRLDDLFIDG---LVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVE 711 G V + I+G V + D D+ + G+T+++ DR+ VRVE Sbjct: 879 NGLVVFVPKFGIEGPVLFVEGENSDTATCTLDEDAMTVT--HKGKTWKVFDRLTVRVE 934 >UniRef50_UPI000180BAF4 PREDICTED: similar to DIS3 mitotic control homolog-like 2 n=2 Tax=Ciona intestinalis RepID=UPI000180BAF4 Length = 925 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 142/692 (20%), Positives = 269/692 (38%), Gaps = 98/692 (14%) Query: 82 LDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADR----- 133 +L+KGT+ + + F + D+ + + ++GD V + Sbjct: 160 GELIKGTLRVNAKKFSHAF-IADKEGHDILMDGFKDRNRALNGDVVAVRIKDKKDWIIGV 218 Query: 134 ---------------------------------KGRREARIVRVLVPKTSQIV-GRYFTE 159 K R+ +V ++ K+ Q+V G + Sbjct: 219 SDLAEQLGAVSVGDSKADQTSPNVSSPTVGKFNKTRKTGVVVGIVEKKSRQVVTGHLRLD 278 Query: 160 AGVGFVVPDDSRL--------SFDILIPPDQIMGARMGF-----VVVVELTQRPTRRTKA 206 P+D + + ++ IP +++M + + V ++ + Sbjct: 279 K----AKPNDKFITLETVSKNNQNLQIPREEVMKEKAKQDISNVLFVGKILKWEPHSPLP 334 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVEQQVA-GLKEEVPEEAKAGRVDLR 264 +G++ + +G+ L HE+ + AV Q + L +P+ +A R D Sbjct: 335 LGELCQSIGEIGQIEPETTRILIDHEVDFSEFSNAVNQCLPSDLPWTIPQAERAKRRDFT 394 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 + +ID ARD DDA++C++ G + + V IADVSY+V P T LD+ A R TSVY Sbjct: 395 SECIFSIDPPSARDLDDALHCKQLPNGTYEIGVHIADVSYFVHPGTALDKVASERCTSVY 454 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 +VIPMLP +L LCSLNP +RL ++ +G++ F +V+ S A+ +Y Sbjct: 455 LVQRVIPMLPRLLCEELCSLNPGTERLAFSVVWNITEQGKILSQWFGRSVIRSCAKFSYD 514 Query: 385 KVWHILQGDQDLREQYA------------------PLVKHLEELHNLYKVLDKAREERGG 426 + Q + + L + + L K R + G Sbjct: 515 HAQSFIDNPDRDFSQPESACQENEFPEITGNFSMNEIKTKVLGLFKVSQNLRKQRIDNGA 574 Query: 427 ISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVE-KAKEPALFR 484 + + + N+E + +++LIEE M+LAN++ A + A R Sbjct: 575 LRLDQVRLSYTLNSETGLPNGCYTYEYKKSNELIEEFMLLANMAVAHKLYTSIPTHAFLR 634 Query: 485 IHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVAD--RPDAEMLQTMLLRS 542 H +P E + F S LGLE+ + + + + + L + ++ Sbjct: 635 SHSEPKEEMMQDFVSTCMALGLEVDASSSEALAESLRTAPGADELAKYRKQALFLLAIKP 694 Query: 543 MKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595 + A Y D H+ L + Y HFTSPIRRY DL +HR + ++ ++ Sbjct: 695 QQLATYICAGSVSDESKYHHYALNVPLYTHFTSPIRRYADLVVHRQLAAVIGEQ------ 748 Query: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655 ++ + S +E+ C+ + A +A D + + +G++ +V Sbjct: 749 -SDEQMMNLSTDELQAQATLCNHRKSNAKQAQELSIDLFFNLLVNNFGPLESRGMVMNVL 807 Query: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQV 687 + + + V++ L ++ ++ Sbjct: 808 DRAVDILSTEYGVTKRVYLEELPLISHKCEEK 839 >UniRef50_B7GAY1 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAY1_PHATR Length = 908 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 135/563 (23%), Positives = 236/563 (41%), Gaps = 37/563 (6%) Query: 136 RREARIVRVLVPKTSQIVGRYFTEAGV----------GFVVPDDSRLSFDILIPPDQIMG 185 R ++V ++ S G + P D ++ ILI Q Sbjct: 359 RPTGKVVGIIRRNFSTYSGSIYAIKNYEREHPDGSITCVFFPVDKKIP-PILIRTTQRDR 417 Query: 186 ARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQ 244 G +VV + P+ +G V V+G + ++ L+ H+IP+ +P AV Sbjct: 418 LF-GQRIVVAMDSWPSTSIYPLGHYVRVIGPAGSKDVETEVLLQEHDIPHEPFPAAVLAC 476 Query: 245 VAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSY 304 + + + GR D+R +P+++ID + +D DDA++C G +++ V IADV++ Sbjct: 477 LPPEDYRIDVDNSPGRQDIRHIPVLSIDPPNCKDIDDALHCTVLPNGNFQVGVHIADVTH 536 Query: 305 YVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGR 364 YV+ T +D EA NR TS Y ++ + MLP +L+ LCSL VDR V+ + Sbjct: 537 YVQAGTAIDLEAANRSTSTYLVNKRLDMLPSLLTTDLCSLKGNVDRYAFSVLWEVTPEAE 596 Query: 365 LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREER 424 + +F + ++ S A LTY + ++ D + ++ L +L + K R + Sbjct: 597 ILNVEFQKTIIHSIAALTYQQAQTMIDQPDDPNDIQ---SNAVKRLASLARKFRKRRIDA 653 Query: 425 GGISFESEEAKFIFNAER-RIERIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPAL 482 G ++ S E KF+ ++E ++ +A+ ++EE M+LAN++ + + + ++ Sbjct: 654 GALTLASPEVKFVLDSESLNPTDVQAYALLEANAVVEEFMLLANVTVSKKILRHFPTLSV 713 Query: 483 FRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRS 542 R H P+ S S L++ + D + +D ++L+ + R Sbjct: 714 LRRHPAPNRAMFDSLISKAKSKDLDINIDDSKRLADSLDAAVVESDPYVNKLLRILSTRC 773 Query: 543 MKQAIYD------PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 M A Y P H+GLA Y HFTSPIRRY D+ +HR + + Sbjct: 774 MSPAQYFCSGEFRPMEWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAVGVAP------ 827 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT- 655 + S + L + + R A A R F + I V Sbjct: 828 --LPPHLSSKSYLHDLCANMNRRHRAAQLAGRASVQLHTLIFFAGDGAKEEQAYILDVET 885 Query: 656 ----GFGFFVRLDDLFIDGLVHV 674 F V + I+G V + Sbjct: 886 AEGVEPSFTVIVPRYGIEGRVKL 908 >UniRef50_B6AH31 Exosome complex exonuclease RRP44, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AH31_9CRYT Length = 1097 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 156/671 (23%), Positives = 269/671 (40%), Gaps = 95/671 (14%) Query: 134 KGRREARIVRVLVPKTSQIVGRYFT---------------EAGVGFVVPDDSRLSFDILI 178 + ++V +L + G +P D ++ I I Sbjct: 446 RDHYNGKVVGILKRNWKEYCGTLLPLNTDDNRYSICYNSSARQHRIFIPIDPKIPR-IRI 504 Query: 179 PPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IW 237 +VVV + + G V LG + L IP + Sbjct: 505 HTRMSSLLDYQRLVVV-IDEWDRSSFYPSGHWVSTLGRAGDLEAETSVILHCRNIPSAEF 563 Query: 238 PQAVEQQVAGL----KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE------- 286 P V + + + E E +GR D R+ + ++D +D DDA+ E Sbjct: 564 PNKVLRCLPNYGTNKEWEPRESDFSGRSDWRNKLVFSVDPPGCKDIDDALSIELIEGDDA 623 Query: 287 -----KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGL 341 +R+ V IADV+++V+P+T +D EA R T+ Y ++ I MLP L+ + Sbjct: 624 NGKLAPNDDVWYRVAVHIADVTHFVKPNTTIDEEASRRCTTCYLVNRRIDMLPGELTTDI 683 Query: 342 CSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA 401 CSL DRL C ++ ++ F + +++S TY + I+ + + Sbjct: 684 CSLVSHKDRLAFTCIWEINGLCKIRRSNFEKTIINSKHSYTYGEAQSIIDNLSNNSNE-- 741 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER------------------- 442 L L NL K+L K R +RG + S E K R Sbjct: 742 --AVALRRLLNLSKILRKRRIDRGALELASSEVKIDLEEARTVKQSDIIDTSTEIDNTSA 799 Query: 443 ----------RIERIEQTQRNDAHKLIEECMILANISAARF-VEKAKEPALFRIHDKPST 491 I+ + Q D + ++EE M+LANI+ A F ++ AL R H +P Sbjct: 800 RNCNETSKIPNIKSVNMYQYLDTNSMVEEFMLLANITVAEFTLKHFPSCALLRKHPEPKY 859 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-------AEMLQTMLLRSMK 544 + + V+A+ G+ + A+ L ++ D P+ ++++ + R+M Sbjct: 860 DQLDKLAQVIAKAGIH--NFKYKTSAELAKSLNNIKDDPNFQKDPIVNKLIRILTTRTMN 917 Query: 545 QAIY-----DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTET 599 QA+Y E H+GLA Y HFTSPIRRY D+ +HR ++ L + ++ + Sbjct: 918 QAVYFTTCKSSEGTYHYGLAENIYTHFTSPIRRYADIIVHRLLEASLGFSKLNEDIS--- 974 Query: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGF 659 + ++ML+L Q + + R A A RD + + + + +I V Sbjct: 975 -----NKDKMLKLTQRLNKSMRNAQLAGRDSSKLFIYLYCKQHGKQIVEAMIMQVRNNFI 1029 Query: 660 FVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM-GESSGQTYRLGDRVEVRVEAVNMD-E 717 V + D +G V +LD D +++D +L+ E +T +L DRV V V + + Sbjct: 1030 LVFVPDFGFEGSV---NLDTDKFKYDFSVPQLVNNEDPTETLKLFDRVIVTVYISDEYFQ 1086 Query: 718 RKIDFSLISSE 728 K+ L+S + Sbjct: 1087 NKVILDLVSKK 1097 >UniRef50_Q21LP7 RNAse R n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LP7_SACD2 Length = 646 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 182/670 (27%), Positives = 306/670 (45%), Gaps = 25/670 (3%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M L + A+ E + GTV +GF+R+ D +L E+M+ + G Sbjct: 1 MLDKTTLSQLSQLKQAIHESKEYATGTVASTNGRFGFVRLTDG-RDAFLDPEKMQFVLPG 59 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+V D+K + EA I +++ + VG Y + F VPDD +++ I IPP Sbjct: 60 DEVKILVTTNDKK-QLEATIEQLIDSPLKRFVGTYRVKGNAHFAVPDDPKVNRWIFIPPK 118 Query: 182 QIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV 241 G + G + ++ Q P + KA K++E +G + + +++ + Sbjct: 119 SRKGCKEGEKIAAKIIQHPAQDGKAQAKVIERIGQPDDHHIEYKYTVAKYDLSPWNKEGE 178 Query: 242 EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 ++Q+ ++ + E R D LP VTID RD DDAV+ ++ G L VAIAD Sbjct: 179 DEQLKKIRASIEAEEFGEREDYTQLPFVTIDSPTTRDMDDAVHI-AEQDGKTVLTVAIAD 237 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 + ++ P +PL + A + S Y +IPMLPE L+N SL R +VC +T+++ Sbjct: 238 PASFIAPGSPLAKLAERQAQSTYMLGGIIPMLPESLANDCFSLVEGKKRPALVCTITLAN 297 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAR 421 G + YKF AV+ S +L Y +V L+G ++ A ++ +L L + + R Sbjct: 298 DGAVEDYKFERAVIQSKYKLNYQQVAEFLEG-TNIEGLPADAADNISKLSELATLRYQYR 356 Query: 422 EERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA 481 E I + + + + +I I R AHKL+EE M+L N A F+ + K Sbjct: 357 TEHNLIGQDQLDYDIRLDDKGKISEIRPRSRTVAHKLVEEAMLLTNQCAGEFLAQNKL-G 415 Query: 482 LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLR 541 L +H + I ++L E + P G+ E +L+++++ L L R Sbjct: 416 LHTVHGGFRLDRIGEVNALLKEEQIT-PEGDITELEGNLQLIKALSANERQRNLIPALRR 474 Query: 542 SMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGG 601 M+ A E H G+ + YA TSPIRRY DL H AI +L + + + Sbjct: 475 MMQSAELSDEAGPHMGMGFKHYATSTSPIRRYADLYNHWAIHSVLTGSKPYTFKPHQL-- 532 Query: 602 YHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQ-VGNVFKGVISSVTGFGFF 660 + + +A R++ WL C ++ +G +G + VT GF Sbjct: 533 ------------ERLKETLQAGRQADREIYQWLLCQYVEASLIGFEGRGKVRIVTQQGFG 580 Query: 661 VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 VRL + +DG + + +FD L +G TYR V+V+V +V+ ++R+I Sbjct: 581 VRLIENGVDGFIAFP--KSQEKQFDAKRMTLT--VNGVTYRADCEVDVKVVSVDQEKRRI 636 Query: 721 DFSLISSERA 730 ++L+S + Sbjct: 637 AYALVSPDAE 646 >UniRef50_Q1N135 Exoribonuclease R (Fragment) n=1 Tax=Bermanella marisrubri RepID=Q1N135_9GAMM Length = 658 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 199/652 (30%), Positives = 320/652 (49%), Gaps = 25/652 (3%) Query: 69 VFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQP 128 + + + + +L +GTV G +GF+ E + + +L ++M GD++ Sbjct: 32 LKSLKTQIKTDQEANLQEGTVRGSAGRFGFVSNE-QGESFFLPPDEMAKVFPGDEIRFS- 89 Query: 129 LGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARM 188 D KG+ +A + +++ G + FVVPD +L+ I IPP+ Sbjct: 90 TKEDDKGKTQAIVEKLIKSYFKSFCGYFVKRGKAQFVVPDIHQLNNWIYIPPEACKDVNE 149 Query: 189 GFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGL 248 + E+T+ P + K KI++ LG G A+ + + WP + ++A L Sbjct: 150 NDWLQCEVTRHPYPKGKPQAKILKNLGQLSEPGFERQYAITKFNLSHEWPDIISSELAIL 209 Query: 249 KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRP 308 E+ GRVDL D VTID E RD DDA+Y EK G +RL VAIAD S + P Sbjct: 210 GEDRIPALSEGRVDLSDHAFVTIDSEHTRDMDDALYAEKTEDG-YRLHVAIADPSAWFGP 268 Query: 309 STPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGY 368 +T LDREAR+RG S+YFP + + MLP+ LSNGLCSL RL +VC +++ + G L Y Sbjct: 269 NTSLDREARSRGNSLYFPGRSLAMLPQELSNGLCSLLEGEKRLALVCVLSIGTDGELNHY 328 Query: 369 KFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIS 428 +F EA ++SHA+L+Y +V L+G++D + A L L LH + L + R I Sbjct: 329 EFKEATVTSHAKLSYNQVTEFLEGEKDAVK--AELQDSLLILHETTQALHQGRIRNNLIM 386 Query: 429 FESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 + ++ +++ I +T+RN A KL+EE M+ AN S A+F+++ +F H Sbjct: 387 EDRDDYYLTVGDNGKLQSIVRTERNTAQKLVEEAMLAANKSCAQFLKEIGI-GIFVDHPG 445 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 TE I + ++ + + GN E Y L+ +V + E ++T+L R + ++ Y Sbjct: 446 FRTERIGDIKQIVQDKEIGF-EGNFAELEGYKSLIRAVDAKEFDEPIKTLLSRFLSRSEY 504 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 E + H G+ + Y FTSPIR+Y DL +HR IK L++++ + N Sbjct: 505 SLEAKPHMGMGFECYTTFTSPIRKYSDLLIHRIIKAHLSEQKQLEIN------------- 551 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI 668 + A A WLK ++ N F GVIS + G V + +L + Sbjct: 552 -DETIALLQDALVTGRRAVNLAEHWLKLQYLDKLKENQFDGVISQINPGGLTVTITELGL 610 Query: 669 DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI 720 DG + + + LM E QT+ L +V+V V+ ++ +RK+ Sbjct: 611 DGFIDLRKNKALSF----NRTYLMFEGEKQTFTLDQKVKVEVKKADLVDRKL 658 >UniRef50_C3XYF0 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XYF0_BRAFL Length = 813 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 148/626 (23%), Positives = 250/626 (39%), Gaps = 58/626 (9%) Query: 136 RREARIVRVLVPKTSQIV-GRYFT----EAGVGFVVPDDSRLSFDILIPPDQ-------I 183 ++ A++V + K S+ G + P D RL + +P + Sbjct: 193 QKTAKVVYIYEKKHSRACTGHLKKLDDKDREKVLFSPIDHRLPR-LKVPLEDCPAGFKER 251 Query: 184 MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWPQAVE 242 F+ + +T A ++ + LG+ + L + + + + V Sbjct: 252 PEDHAKFLFIARITDWKEDSGFAEARLAKSLGEAGQIEPETEGLLVENGVDFSEFSEVVL 311 Query: 243 QQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIAD 301 Q + L +P E R DLR + TID ARD DDAV C K G + + V IAD Sbjct: 312 QCLPQDLPWSIPAEEFENRRDLRLDCIFTIDPATARDLDDAVSCNKLDDGTYEVGVHIAD 371 Query: 302 VSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSS 361 VSY+++ +T LD A R TSVY +VIPMLP +L LCSLNP +RL ++ Sbjct: 372 VSYFIQENTALDLTAACRATSVYLVQKVIPMLPRLLCEQLCSLNPAEERLAFSVIWKLTE 431 Query: 362 KGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ-----------YAPLVKHLEEL 410 G + F ++ S +L+Y I+ L Q + + + L Sbjct: 432 TGDVLDEWFGRTIIRSCVKLSYDHAQSIIDNPDQLPTQEQLPTISDGHSIQDVAERVLNL 491 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANIS 469 + + + L K R + G + + + F + E Q D+++LIEE M+LAN++ Sbjct: 492 YKISQNLRKKRFDGGALRLDQPKLAFSLDPESGLPNGCSVYQIRDSNRLIEEFMLLANMA 551 Query: 470 AARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEP-RDYAELL-ESV 526 A + + E A+ R H P + + +G+ L + + A + + V Sbjct: 552 VAHKIHESFPERAVLRRHPPPQPKMVEDLVKTCGTMGINLDISSSGALHQSIARYIGDDV 611 Query: 527 ADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 + +L M + M+ A Y + H+ L + Y HFTSPIRRY D+ +H Sbjct: 612 ETQATFYILTAMASKPMQLAKYFCSGCLPEEGMYHHYALNVPLYTHFTSPIRRYADVLVH 671 Query: 580 RAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM 639 R + L + S EE+ + HC+ + + AD F+ Sbjct: 672 RLLGACLGCGPAVEK----------SAEELQGMTDHCNDRKDASKRVQEASADMFFASFV 721 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR--LMG---- 693 + G++ V V + L + + +++ Y F++V R L Sbjct: 722 KECGPLEEDGMVMGVLDQAVDVLVWRLGVVKRAYCNAIPLKSYDFEKVNGRPQLTLNWAE 781 Query: 694 -----ESSGQTYRLGDRVEVRVEAVN 714 E + Q RV+V + A + Sbjct: 782 DPEHPEPATQVLTYFSRVQVTLRAND 807 Score = 55.7 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADRKG 135 ++ D +KG + + + ++ DLY+ ++GD V+ + L Sbjct: 15 KKGDFIKGALRINARNFEDAYVPAPDGMSDLYIPGLHARNRALNGDIVVLKVLPRSEWR 73 >UniRef50_O14040 Dis3-like exonuclease C2C4.07c n=1 Tax=Schizosaccharomyces pombe RepID=DIS3L_SCHPO Length = 927 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 167/735 (22%), Positives = 276/735 (37%), Gaps = 116/735 (15%) Query: 80 ERLDLVKGTVIG-HRDGYGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR---- 133 + L KGT+ F +E D Y+ H D V+ +P+ + Sbjct: 190 KSGTLFKGTLRILENHRSAFACMEDI-PDFYVDGPIARNRAFHNDVVIVEPVMNNDSPTE 248 Query: 134 -----------------------------------------KGRREARIVRVLVPKT-SQ 151 R AR+V + S+ Sbjct: 249 KSNFLQNGVEKVKIKDHDDELGGAMEHLERLEIKSVASFKGDSRTRARVVAIEKRAEISK 308 Query: 152 IVGRYF-------------TEAGVGFVVPDDSRLSFDILIPPDQIMGA-----------R 187 IVG ++ +P D RL F I I + + Sbjct: 309 IVGILRAPGWSLKNVEYVSKKSSYAIFIPKDKRLPF-ITIHKNDLSDLSGENWIENILKH 367 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA 246 + VE+T+ +G + E LG+ + L + I + V + Sbjct: 368 HDQLFSVEITRWSIYSRYPMGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLP 427 Query: 247 GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYV 306 + E R DLR+ ++TID E ARD DDAV C G + + V IADV+++V Sbjct: 428 PDDWIISHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFV 487 Query: 307 RPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG-RL 365 +P + LD+EA +R T+VY + IPMLP +L LCSLNP V+RL + S G + Sbjct: 488 KPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEI 547 Query: 366 TGYKFYEAVMSSHARLTYTKVWHILQGDQDLR---------EQYAPLVKHLEELHNLYKV 416 F + V+ + ARL Y++ +++G + + L + + Sbjct: 548 GKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRK 607 Query: 417 LDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK 476 L K R +G + S E KF + + E ++ DA+ LIEE M+LAN S A + K Sbjct: 608 LRKDRFAKGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISK 667 Query: 477 -AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535 +L R H P + I F L + + + L S + E+ Sbjct: 668 NFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELF 727 Query: 536 QTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAK 588 + M +RS+ +A Y + + H+ L+ Y HFTSPIRRYPD+ +HR ++ L Sbjct: 728 ENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSLKN 787 Query: 589 EQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV-- 646 + + HC+ + ++ D ++ + Sbjct: 788 TSPG-----------IDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDK 836 Query: 647 ----FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF----DQVGQRLMG-ESSG 697 + + ++G V + + I V +SS D+ F D ++ + S Sbjct: 837 KSMPVQAFATRISGNSIDVYISEYGISNRVDLSS-DDRIKSFIVAPDDSSVKITLFDDSQ 895 Query: 698 QTYRLGDRVEVRVEA 712 +T L DR +V + + Sbjct: 896 KTIALTDRFQVYLYS 910 >UniRef50_UPI00019264F3 PREDICTED: similar to DIS3 mitotic control homolog (S. cerevisiae)-like 2 n=1 Tax=Hydra magnipapillata RepID=UPI00019264F3 Length = 797 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 153/710 (21%), Positives = 275/710 (38%), Gaps = 88/710 (12%) Query: 84 LVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGAD-----RKG 135 L+KG + + + F+ + + D+ L + GD V + + + Sbjct: 47 LIKGVLRINPKKFTDAFISADYNERDILLEGVSSRNRALPGDVVAVELIPQSLTKVIHEN 106 Query: 136 RRE----------------ARIVRVLVPKTSQ----IVGRYFTEA-GVGFVVPDDSRLSF 174 E ++V ++ K + + Y + G ++ P DSRL Sbjct: 107 NAEKNTSEILVNETNNVKRGKVVFIIEKKHPRVATGFIMNYRSNKFGFAYMSPVDSRLPR 166 Query: 175 DILIPPDQ-------IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIA 227 ILIP Q + V + + A G+++ LG+ + Sbjct: 167 -ILIPLQQCPPLFLTRPQDFCKTLFVARIIEWEIDMGFAYGELMRSLGEAGNIEAETESI 225 Query: 228 LRTHEI-PYIWPQAVEQQVAG-LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 + + I + + + + + E R DLR+ + TID ARD DDAV C Sbjct: 226 IAANAIDSSPFGEDIIACLPNGDSWSIKPEEFKKRKDLREECIFTIDPATARDLDDAVSC 285 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 +K + + V IADVS+++ + LD A++R TSVY +VIPMLP VL LCSLN Sbjct: 286 KKIGDDLFEVGVHIADVSFFIEEESKLDIAAKSRATSVYLCQKVIPMLPAVLCERLCSLN 345 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQ--GDQDLREQYAPL 403 P VDRL + S G + F +V+ S +L+YT +++ D DL+++ P+ Sbjct: 346 PGVDRLAYSVIWNMRSDGTVLTEWFGRSVIRSCVKLSYTHAQQLIETGTDSDLKKEEFPI 405 Query: 404 VKH---------LEELHNLYKVLDKAREERGGISFESEEAKFIFNAE-RRIERIEQTQRN 453 V+ + L + + L K R + G + + + F ++E + Sbjct: 406 VEGFSLEKVRDVIHCLFKISQNLRKRRFDSGALRIDQPKLSFNLDSETGLPNGCSVYEYK 465 Query: 454 DAHKLIEECMILANISAARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGN 512 D+++LIEE M+LAN++ R + + A+ R H P + + + + + + Sbjct: 466 DSNRLIEEFMLLANMAVGRKIYAAHPDQAILRNHPAPHPIMLQEVQRICSAYSIFFDISD 525 Query: 513 KPEPRDYAELLESVADRPD---AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQS 562 L + + + + + A Y D H+ L + Sbjct: 526 SSSISKSLTNLSQLESDSRMFIEAAVTMLCAKPFQNATYFCTGTVDDESLYRHYALNVPI 585 Query: 563 YAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERR 622 Y HFTSPIRRYPD+ +HR + L T +++ + HC+ + Sbjct: 586 YTHFTSPIRRYPDILVHRLLTAALD----------STFKVKGRPKQLQAIADHCNERKWT 635 Query: 623 ADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS--LDND 680 A +A+ +D ++ + KGV+ +V V L + V+ L Sbjct: 636 AKKASEQSSDVFFAIYVKECGPFEEKGVVVAVLDKSIDVLCIRLGVVKRVYCDKLLLSGH 695 Query: 681 YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERA 730 Y ++ + +L ++ ID L + ++ Sbjct: 696 KYEYNILKPKLTLFWKKNE--------------DLPNGNIDEKLENLKKQ 731 >UniRef50_UPI0001A2D29A UPI0001A2D29A related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D29A Length = 829 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 144/608 (23%), Positives = 247/608 (40%), Gaps = 55/608 (9%) Query: 130 GADRKGRREARIVRVLVPKTSQIVG---RYFTEAGVGFVVPDDSRLSFDILIPPDQ---- 182 ++R ++ ++V ++ K S+ V ++ P D R+ + +P Sbjct: 194 SSERTTQKNGKVVFIVEKKHSRAVSGFLKFLPNKRFAMFSPVDHRVPR-VNVPLADCPAD 252 Query: 183 ---IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIWP 238 G + + +TQ P A G++ + LG + L + + + Sbjct: 253 FTSRPGDYENTLFICRITQWPADSNFAEGRLAKTLGQAGEIEPETEGILTEYGVDFSEFT 312 Query: 239 QAVEQQVA-GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + V + L +P + R DLR + TID ARD DDA+ C++ G + + V Sbjct: 313 EEVLNCLPQDLPWSIPAHELSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGV 372 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADVSY+V+ LD A R TSVY +VIPMLP +L LCSLNP DRL Sbjct: 373 HIADVSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIW 432 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ-----------DLREQYAPLVKH 406 +S +G++ F V+ S +L+Y ++ + + Sbjct: 433 KLSPEGKILSEWFGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEA 492 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMIL 465 + LHN+ K L R E G + + + F + E + Q D++KL+EE M+L Sbjct: 493 VLNLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLL 552 Query: 466 ANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLE 524 AN++ + + E AL R H P T+ + + ++GL++ + L Sbjct: 553 ANMAVGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSG---ALHRSLN 609 Query: 525 SVADRPD-----AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRR 572 + E++ M R M+ A+Y D + H+ L + Y HFTSPIRR Sbjct: 610 ENLGDDEYTAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRR 669 Query: 573 YPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVAD 632 Y D+ +HR + L S EE+ Q HC+ + + ++ Sbjct: 670 YADVIVHRLLGASLNCGP----------RLSVSGEEVHQQASHCNDRKTASKRVQELSSE 719 Query: 633 WLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 F+ + + ++ V F V + + ++ +SL+ +V R + Sbjct: 720 LFFAVFVKECGPLDSEAMVMGVLDQSFDVLVLRYGVQKRIYCNSLEGLK----EVEFRKV 775 Query: 693 GESSGQTY 700 G+ T Sbjct: 776 GKKPEMTL 783 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGADRKGR 136 +R +L++G + + Y ++ D++L ++GD V+ + L ++ + Sbjct: 32 KRGELIQGVLRINPKKYKEAYIPSPDGSADIFLDGISARNRALNGDVVVVKVLPLEQSQK 91 >UniRef50_Q8IYB7 DIS3-like exonuclease 2 n=29 Tax=Tetrapoda RepID=DI3L2_HUMAN Length = 885 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 133/633 (21%), Positives = 249/633 (39%), Gaps = 62/633 (9%) Query: 131 ADRKGRREARIVRVLVPKTSQIVGRYFTE---------AGVGFVVPDDSRLSFDILIPPD 181 +++ +R A++V +L K S+ + P D R+ I +P Sbjct: 225 SEKSLQRSAKVVYILEKKHSRAATGFLKLLADKNSELFRKYALFSPSDHRVPR-IYVPLK 283 Query: 182 Q-------IMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 + + + A+G++ + LG + L + + Sbjct: 284 DCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVD 343 Query: 235 -YIWPQAVEQQVAG-LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG 292 + V + + L +P E + R DLR + TID ARD DDA+ C+ G Sbjct: 344 FSDFSSEVLECLPQGLPWTIPPEEFSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGN 403 Query: 293 WRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLC 352 +++ V IADVSY+V + LD+ A R TSVY +V+PMLP +L LCSLNP D+L Sbjct: 404 FKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLT 463 Query: 353 MVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQD-----------LREQYA 401 T++ +G++ F ++ S +L+Y +++ + Sbjct: 464 FSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSE 523 Query: 402 PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFN-AERRIERIEQTQRNDAHKLIE 460 + + + LH + K L + R G + + + F + + + +++KL+E Sbjct: 524 EVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVE 583 Query: 461 ECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDY 519 E M+LAN++ A + + E AL R H P T ++ ++GL + + Sbjct: 584 EFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKS 643 Query: 520 --AELLESVADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPI 570 + E+L M R M+ A+Y DP H+ L + Y HFTSPI Sbjct: 644 LTQTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPI 703 Query: 571 RRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDV 630 RR+ D+ +H + L + + + + + HC+ + Sbjct: 704 RRFADVLVHSLLAAALGYRE----------RLDMAPDTLQKQADHCNDRRMASKRVQELS 753 Query: 631 ADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQR 690 + + + ++ + F V + + ++ ++L + F +VG++ Sbjct: 754 TSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIYCNALALRSHHFQKVGKK 813 Query: 691 -----------LMGESSGQTYRLGDRVEVRVEA 712 + E + Q + VEV ++A Sbjct: 814 PELTLVWEPEDMEQEPAQQVITIFSLVEVVLQA 846 Score = 58.8 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG- 135 +R L++G + + + F+ D+++ ++GD V+ + L + Sbjct: 64 KRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEEHWKV 123 Query: 136 -RRE 138 + E Sbjct: 124 VKPE 127 >UniRef50_Q08162 Exosome complex exonuclease DIS3 n=24 Tax=Saccharomyceta RepID=RRP44_YEAST Length = 1001 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 250/632 (39%), Gaps = 53/632 (8%) Query: 126 AQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA--------GVGFVVPDDSRLSFDIL 177 A +K + A++V + Q VG+ + FV+ D L + Sbjct: 377 AMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLP-KVR 435 Query: 178 IPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-I 236 I + + +V+ + PT +G V LG + L H++ Y Sbjct: 436 IRTRRAAEL-LDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRP 494 Query: 237 WPQAVEQQVAGL--KEEVPEEAKAG-----------RVDLRDLPLVTIDGEDARDFDDAV 283 + + V + + + P + R DLRD + +ID D DDA+ Sbjct: 495 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDIDDAL 554 Query: 284 YCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCS 343 + +K G W + V IADV+++V+P T LD E RGTSVY + I MLP +L LCS Sbjct: 555 HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 614 Query: 344 LNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPL 403 L P VDR + + F ++V+ S +Y + + D + Q L Sbjct: 615 LKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI----DDKTQNDEL 670 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEEC 462 + L L L + R E G ++ S E K ++E +E + + L+EE Sbjct: 671 TMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEF 730 Query: 463 MILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAEL-GLELPGGNKPEPRDYA 520 M+LANIS AR + + A+ R H P + +L + + + D Sbjct: 731 MLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSL 790 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAI------YDPENRGHFGLALQSYAHFTSPIRRYP 574 + D +++ M R M A Y + H+GLA+ Y HFTSPIRRY Sbjct: 791 DRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYC 850 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 D+ HR + + E + +M + ++ + R A A R ++ Sbjct: 851 DVVAHRQLAGAIGYEPLSLTHR--------DKNKMDMICRNINRKHRNAQFAGRASIEYY 902 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDND--YYRFDQVGQRL- 691 M + G + V G V + ++GL+ + +L D FD+V +L Sbjct: 903 VGQVMRNNESTE-TGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLT 961 Query: 692 ---MGESSGQTYRLGDRVEVRVEAV-NMDERK 719 + + D+VEV+V +V + K Sbjct: 962 FVPTNSDKPRDVYVFDKVEVQVRSVMDPITSK 993 Score = 45.3 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYL-SSEQMKTCIHGDQVLAQPLGADRKGR 136 + L +G + + G + + + + + + +GDQV+ + L Sbjct: 269 KNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA 328 Query: 137 REARIV 142 + ++ Sbjct: 329 PSSIVL 334 >UniRef50_B6K5A6 Mitotic control protein dis3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5A6_SCHJY Length = 859 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 162/722 (22%), Positives = 271/722 (37%), Gaps = 103/722 (14%) Query: 50 EQLEGLRRRLRA-MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGY-GFLRVEGRKDD 107 + + L+ + ++ L ++ L+KGT+ + F+ VEG DD Sbjct: 99 KSRKPLKAVYEEHLTKEAYLEGLKKGT--------LLKGTLRILDSFHSAFVTVEGYADD 150 Query: 108 LYLSSE-QMKTCIHGDQVLAQPLGADRKGR-----------------------------R 137 Y+ + D V+ + L Sbjct: 151 FYIDGMIARNRALDNDTVIIETLKDRAPASESVTVQGSSSSEDDLTADPALPTSVASSNP 210 Query: 138 EARIVRVLVP-KTSQIVGRYFT-------------EAGVGFVVPDDSRLSFDILIPPDQI 183 A++V + +VG ++ P R+ F + I + + Sbjct: 211 NAKVVAIAERWPRDSVVGILHPPGWSPNTGSPRNSKSNYCIFQPQSKRMPFHL-IHKNDL 269 Query: 184 MGA-----------RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHE 232 G + V+ + K+ + +G + L Sbjct: 270 GELSGSNWREQITQNEGVIFSVKRKTWSATSRYPLAKVDKRIGHLSNIEASTQAILLERM 329 Query: 233 I-PYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 + +P V + + +E +A R D ++TID E ARD DDAV C G Sbjct: 330 VNSREFPDEVLDCLPSDNWCITDEERAKRRSFLDQIVLTIDPETARDLDDAVSCIDNGDG 389 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 +R+ V IADVS++V+P T LD EAR+R T+VY + IPMLP +L LCSLNP V+RL Sbjct: 390 TYRISVHIADVSHFVKPETALDNEARSRATTVYLVQRAIPMLPTLLCERLCSLNPSVERL 449 Query: 352 CMVCEMTVSSKG-RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK----- 405 E V G L F ++++ + RLTYT+ +IL+G P+ Sbjct: 450 AFSVEWLVDRNGRELGPRWFGKSLIKTCCRLTYTEAQNILEGKSWEEGVGKPISDGFKAT 509 Query: 406 ----HLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEE 461 + L+ + K L KAR + G +S + E KF + + ++ E + DA++LIEE Sbjct: 510 DVEVSIRNLNIIAKALRKARFDNGAVSVNTSELKFRLDEQGLPQKCEVYEHKDANRLIEE 569 Query: 462 CMILANISAARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520 M+ AN S A + AL R H P + + F LA LG + G D Sbjct: 570 FMLFANRSVAEKISNHFPHVALLRRHAPPKEKQLGEFIRFLAHLGFDFDGSTSARFNDSL 629 Query: 521 ELLESVADRPDAEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRY 573 + L E+++ M RS+++A Y H+ LA Y HFTSPIRRY Sbjct: 630 QRLREKFPSDITELIENMAARSLQRAEYFCTGSTDSVSEWLHYALAFSHYTHFTSPIRRY 689 Query: 574 PDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADW 633 PD+ +HR ++ + ++ ++ HC+ + A A D Sbjct: 690 PDIIVHRLLECAVQDCDSSLKT-----------KQCNEIATHCNTKKENARLAQEDSNFV 738 Query: 634 LKCDFMLDQVGNV------FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDN-DYYRFDQ 686 ++ + ++ + V + + + + + + D Sbjct: 739 FLSVYLNKYSEEHKVPAMPVRVFVTRILDHSIDVHIPVFALTRRISFLDEPSLESFEVDD 798 Query: 687 VG 688 Sbjct: 799 SE 800 >UniRef50_Q5MZZ6 Protein conferring resistance to acetazolamide Zam n=2 Tax=Synechococcus elongatus RepID=Q5MZZ6_SYNP6 Length = 748 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 186/740 (25%), Positives = 318/740 (42%), Gaps = 40/740 (5%) Query: 30 KREKPASRDELAVELHIEGEEQLEGLR---RRLRAMERDGQLVFTRRQCYALPERLDLVK 86 K + +L +L E E++ L+ L A+ER G L R Y E + V+ Sbjct: 13 SEGKFVAPKQLEKKLGCEDEDKSRKLQIILDALDALERLGLLTKDR-GKYRRNEENEWVE 71 Query: 87 GTVIGHRDGYGFLRVEGRK-DDLYLSSEQMKTCIHGDQVLAQPLGADRKGR-REARIVRV 144 + G+ F + +D+Y+ Q+ +GD+VL L + R E + + Sbjct: 72 ARLRCSSKGFCFAIQDAEDAEDIYIREHQLNHAWNGDRVLVNVLREGSRRRSPEGEVKLI 131 Query: 145 LVPKTSQIVGRY--FTEAGVGFVVPDDSRLSFDILIPPDQI-MGARMGFVVVVELTQRPT 201 L S ++ R E VP D RL ++ + + + + A + V + + P Sbjct: 132 LERANSSVLARITEKAEGEGFRAVPLDDRLLCELDLESNGLDLAANRDHLASVAVQRYPL 191 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRV 261 + VGK+ ++LG + + VD+ H +P W +A + L + A GR+ Sbjct: 192 AQLPPVGKVTQILGSDPESASPVDLIRCKHNLPADWSEAAIAALTDLAQTADANAIQGRL 251 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGT 321 DLR + V I +D+R D A+ + GGW++ V +V+ Y+ + LD EA+ G Sbjct: 252 DLRSVFTVAIAADDSRPLDVALSLQPGESGGWQVMVHTVEVAPYLPLQSDLDLEAQRHGI 311 Query: 322 SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARL 381 + +P LP VL+ G+ DR + + V + G + Y+ +++ L Sbjct: 312 DLRLGETALPFLPPVLTQGVGRFAVGEDRRAVSLLIRVDATGAVQDYELQPSLVQLDQVL 371 Query: 382 TYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAE 441 + + +L + E +K L+EL + + R ERGG FE I N E Sbjct: 372 SPAEATDLLADSKAKGEG----IKALKELQTIADLWRTQRRERGG--FELTVTPAIGNDE 425 Query: 442 RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVL 501 + I ++ ++E +I AN ++ + P L+ P +I + + Sbjct: 426 GALGVISRSPAIAG--AVQEILIQANRLVTEHLQALELPVLYVGQRSPDLGSIQDAQRLA 483 Query: 502 AELGLELPGGNKPE---PRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGL 558 A LGL + +L ++ A +L +LL++ K + Y HF L Sbjct: 484 AGLGLAIEVDENETELNRLALQQLSDATQTSELASLLDHLLLQTFKPSFYSTLAVPHFSL 543 Query: 559 ALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG------------------ 600 L++Y HF +P +RY DL L R I L + + + + ++ G Sbjct: 544 GLETYGHFVAPSQRYADLWLQRVILALFQQGRDRRSSRSKEGVNIRHSSSHGQINWSVLP 603 Query: 601 --GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFG 658 ++ L Q S AE+RA EA+ D K +G F GVI V +G Sbjct: 604 PEVQTELETDLKLLAQQLSEAEKRATEASADYQGLQKAAAAKACIGQTFAGVIRGVQSYG 663 Query: 659 FFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDER 718 FFV+++ L ++GLVHVSS +D+Y + QRL+G + + + LGDRVEV + V+ + Sbjct: 664 FFVQIEALQVEGLVHVSSPKDDWYEYRSRQQRLIGRKNRRQFGLGDRVEVEIRNVDYYRQ 723 Query: 719 KIDFSLISSERAPRNVGKTA 738 +ID ++ A Sbjct: 724 QIDLGVLPLPEAQSETSDRE 743 >UniRef50_UPI0000E47D53 PREDICTED: hypothetical protein, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E47D53 Length = 807 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 263/629 (41%), Gaps = 58/629 (9%) Query: 137 REARIVRVLVPKTSQIV-GRYF----TEAGVGFVVPDDSRLSFDILIPPD-------QIM 184 + AR+V + K S+ G A P D R+ I IP Q Sbjct: 189 KTARVVYICEYKHSRAASGHLKLPSNPRAPDVMFAPTDHRVPR-IYIPRKECPATFSQRP 247 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQ 243 + + ++ P A G ++ +G L H I + V + Sbjct: 248 QDYANTLFIAQIIDWPRISAFAKGHLLYSIGQAGEVEAETTAMLIEHGIDSSEFTTEVLE 307 Query: 244 QVAGL-KEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADV 302 + +P E + R DLR + TID ARD DDA++C+ G + + V IADV Sbjct: 308 DLPKERPWRIPAEELSQRRDLRSECIFTIDPTTARDLDDALHCKALGDGIYEMGVHIADV 367 Query: 303 SYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSK 362 SY+V+ T LD+ A +R TSVY +VIPMLP +L LCSLNP +RL M ++ + Sbjct: 368 SYFVKEDTSLDKTASHRATSVYLVQKVIPMLPRLLCEELCSLNPDQERLTMSFIWRMTEE 427 Query: 363 GRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY-----------APLVKHLEELH 411 G + +V+ S +L+Y +++ ++ + + + + + Sbjct: 428 GEILQEWCGRSVIRSCVKLSYLHAQDMIENWEEKGDDIVLPEITNGFGRNEVAQAVLNMQ 487 Query: 412 NLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISA 470 + L K R + G + + + ++ NAE Q+ D+++L+EE M+LAN++A Sbjct: 488 KIASNLRKKRFDGGALRLDQVKLQYSLNAETTLPNGYSVYQQKDSNRLVEEFMLLANMAA 547 Query: 471 ARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADR 529 A + KA + A R H P + + ++ LGL++ G + + + ++ Sbjct: 548 AHRIFKAEPQRAFLRRHPPPKEKMMDDLATLCESLGLDMDGTTAGKLQASLNRYCTSEEQ 607 Query: 530 PD--AEMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHR 580 ++L + + M++A Y D E H+ L + Y HFTSPIRRYPD+ +HR Sbjct: 608 AKCLLKVLTVLYSKPMQKARYFCCASLEDEEMYRHYALNVPLYTHFTSPIRRYPDILVHR 667 Query: 581 AIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML 640 + LA E + + C+ A+ A E + +D C F+ Sbjct: 668 MLASSLACGP----------VMERDPERLQRQAMRCNDAKDSAKEVSDKSSDLFFCQFVK 717 Query: 641 DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY------RFDQVGQRLMGE 694 + V K ++ +V F V + +L V+ +++ ++ ++ E Sbjct: 718 ECGPLVEKAIVMAVLDRSFDVLIINLGQVKRVYCNAIPLKKLIAVPIAKYYELTLEWEDE 777 Query: 695 SSGQ----TYRLGDRVEVRVEAVNMDERK 719 + + ++ +V V + + K Sbjct: 778 AGSKGVTQVIKMFSQVTVELT-ADRMPGK 805 >UniRef50_B3PIE9 Exoribonuclease II n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIE9_CELJU Length = 664 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 180/677 (26%), Positives = 311/677 (45%), Gaps = 25/677 (3%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M + L +L + D+ +GT+ +GF+ ++ ++ +L EQ+ + Sbjct: 1 MLNNDALQQLASLKSSLVAQKDIAQGTIRTTTKRFGFILLDDGRE-AFLDPEQILRVLPE 59 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D+ A+ + G+ EA++ ++L + VGRY ++ FV PD + + +PP Sbjct: 60 DRAEAEITTNAK-GQYEAKLTKLLHSNLQEFVGRYVSKGTNFFVEPDLVHFNRWLFVPPQ 118 Query: 182 QIMGARMGFVVVVELTQRPTR-RTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 G G +V ++ + P KA I++ LG+ G+ A+ ++P WP A Sbjct: 119 DRKGLTEGDLVHCQVARHPFHCDGKAQVHILKRLGNVDEPGIESRYAIARFQLPCEWPPA 178 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + Q + + P + DL LP VTID E RD DDAV + G W L+ AIA Sbjct: 179 AQNQASSIHWS-PLVFENNEEDLTQLPFVTIDSESTRDMDDAVCIQATEHG-WELFSAIA 236 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 D + ++ +PL++ AR R ++ Y + MLP LS SL + R +VC + + Sbjct: 237 DPTKHIDFDSPLEQAARERASTHYILGNTLTMLPVDLSQDTYSLVAEQKRPALVCRIHIR 296 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + G + + F EAV+ S +L+Y V+ L + L L L + + Sbjct: 297 NDGHIESFAFSEAVIRSRQKLSYQGVYDFLTTAAET-NLSDELRTQLTMLRDFALARSQY 355 Query: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP 480 R++ + E + +FI N +++IER+E+ R AH+++EE M+ N+ A + Sbjct: 356 RQQHNLLMEEKPDYQFILNEQKKIERVEKRDRTIAHRIVEEAMLATNLCAGELFSQHPGY 415 Query: 481 ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVA----DRPDAEMLQ 536 +F H E + +++ E +L G+ + +D+ L + P L Sbjct: 416 GIFSGHIGFRPERVNDAVALIQEDRPDLSPGDLSQLKDFLNLFRELRQNPGQHPANAALH 475 Query: 537 TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNT 596 ++L R ++ E HFGL +YA TSPIRRY D H IK LL E Sbjct: 476 SLLQRQLQAGALSQEPVPHFGLGFNAYAMVTSPIRRYNDFFNHLGIKRLLRGEP------ 529 Query: 597 TETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTG 656 +++ +++ + +A R WL C +M +G+V G I+ V Sbjct: 530 ------PLALDNLVEFVERLQHKLNLGRQACRFTETWLACQYMNQHIGSVHTGNIALVNS 583 Query: 657 FGFFVRLDDLFIDGLVHVSSLDND-YYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715 G VRLDD ++G + + D+D +FD L +G TY+L + V+V ++ V++ Sbjct: 584 TGIGVRLDDWGMEGFIPLVPRDSDIKAQFDSRRLSL--NVNGNTYKLDEVVQVVIDEVDV 641 Query: 716 DERKIDFSLISSERAPR 732 +R++ SL+ A R Sbjct: 642 SKRRVALSLVDEATAAR 658 >UniRef50_UPI0001983978 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera RepID=UPI0001983978 Length = 899 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 150/712 (21%), Positives = 252/712 (35%), Gaps = 126/712 (17%) Query: 86 KGTVIGHRDG--YGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG------- 135 +G + +R ++ E D++ + M GD V + L D+ Sbjct: 238 QGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVELLPQDQWQEEKSLSI 297 Query: 136 ----------------------------------------RREARIVRVLVPKTSQIVGR 155 R R+V ++ G Sbjct: 298 ADEEDEEEEDVHLVPSSADDAPRNTDLAQGSVGGTKAVLCRPSGRVVGIIKRNWHSYCGS 357 Query: 156 YFT------EAG--VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 G V D R+ I I Q+ + ++V + Sbjct: 358 LEPMPMPAGNGGIAHALFVSKDRRIP-KIRIQTRQLGNL-LDKRIIVAVDSWDCLSRYPS 415 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAG--RVDLR 264 G V L ++I + V + L V E A R+DLR Sbjct: 416 GHYV---------------VLIENDINSRPFSLQVLACLPPLPWSVSSEDLANPCRLDLR 460 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 + + ++D D IADV+ +V P TPLD EA RGTSVY Sbjct: 461 HVCVFSVDPPD-----------------------IADVTNFVHPGTPLDDEAAQRGTSVY 497 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 + I MLP+ L+ +CSL V+RL ++ + + K+ ++++ S A L+Y Sbjct: 498 LVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPQAEIISTKYTKSIIKSCAALSYI 557 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR- 443 + D PL L ++ L KV+ R ERG ++ S E KF + E Sbjct: 558 EAQA----RMDDSRLMDPLTMDLRNMNALAKVMRLRRIERGALTLASAEVKFQIDTETHD 613 Query: 444 IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I Q +A++++EE M+ AN+S A ++ +L R H P+ E + A Sbjct: 614 PLDIGMYQIREANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTREMLEPLLRTAA 673 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHF 556 +GL L + D + D ++++ + R M QA+Y P H+ Sbjct: 674 AVGLNLDVSSSKALADSLDH-AVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFHHY 732 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA Y HFTSPIRRY D+ +HR + L + ++ + Sbjct: 733 GLAAPLYTHFTSPIRRYADVIVHRLLAASLG--------LYKLPTIFQDNAQLTSTADNL 784 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVS- 675 + R A A R + + + + + I + GF V + I+G V+++ Sbjct: 785 NYRHRNAQMAGRASVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKYGIEGPVYLTP 843 Query: 676 --SLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLI 725 + D+ Q++ +Y + V + +E V + L Sbjct: 844 RGEKGGGEWVVDEQQQKVKKMDGSISYSVLQTVMIHMEVVEPQPNRPKLELA 895 >UniRef50_B0D4A4 Predicted protein n=9 Tax=Dikarya RepID=B0D4A4_LACBS Length = 1000 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 161/747 (21%), Positives = 271/747 (36%), Gaps = 116/747 (15%) Query: 79 PERLDLVKGTVIGHRDGY--GFLRVEGRKDDLY-LSSEQMKTCIHGD------------- 122 + +L +G ++ Y G + V + + E M + GD Sbjct: 266 VKSGELYQGHFNANQYNYLEGSVPVPAFSKPVLLIGRENMNRAVQGDVVVVEVFDKKEWK 325 Query: 123 ----QV--------------------------------LAQPLGADRKGRREARIVRVLV 146 +V L + + + RIV V+ Sbjct: 326 APADEVVDQDTALKNDDAEDSGDEGEGEGNESVAREKKLLESEKRSSEKQPTGRIVGVIK 385 Query: 147 PKTSQIVGRYFTEA-----------GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVE 195 V + + F P L I + Q +G ++V Sbjct: 386 RNWRAYVCHIDSTSLTSSNATSLSLQTVFATPVSRLLPR-IRLRTRQAPIL-IGQKILVT 443 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAG------- 247 + + T G V LG + L E+PY + +A+ + Sbjct: 444 IDRWDTTSRYPEGHFVRALGKVESKEAEQESLLLEFEVPYRPFGKAILDCLPPQGEQWVV 503 Query: 248 LKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVR 307 + R DLR L + +ID + +D DDA++ K G V IADVS++V Sbjct: 504 PPKSPDSPEWKDREDLRGLIICSIDPPNCQDIDDALHARKLPNGNIEAGVHIADVSHFVH 563 Query: 308 PSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTG 367 P P+D EA +RGT+VY + I MLP +L LCSL P V+RL ++ + + Sbjct: 564 PDNPMDSEAASRGTTVYLVDKRIDMLPSLLGTNLCSLRPFVERLAFSAIWEMTPEAEIVN 623 Query: 368 YKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGI 427 +F ++V++S A TY + +D Q L + + L++L L R G + Sbjct: 624 VRFTKSVIASKAAFTYEEAQ----IRKDDPHQQDELTQSIRLLNSLALKLKAGRMAAGAL 679 Query: 428 SFESEEAKFIFN--AERRIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFR 484 + S E K + +EQ + + + L+EE M+LANIS AR +++ + A+ R Sbjct: 680 NLASPEVKIQLDTSESSDPIDVEQKELRETNSLVEEFMLLANISVARKIQETFPQTAVLR 739 Query: 485 IHDKPSTEAITSFRSVL-AELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSM 543 H P + +L G++L + +L +++ M R M Sbjct: 740 RHLPPPRTNFEKLQDILMKRKGMKLDVSSSGALAASLDLCVDPELPAFNTLVRIMATRCM 799 Query: 544 KQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTT 597 A Y + GH+GLA Y HFTSPIRRY D+ HR + + H Sbjct: 800 LSAEYFCSGSVARDTFGHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIGYTPLHAT--- 856 Query: 598 ETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV----------- 646 +S + ++ + R A A R ++ + ++ Sbjct: 857 -----LHSKTHVERVLDVVNRKHRMAQMAGRASVEFYVGLALKNRGEREKEKKGTVGEVR 911 Query: 647 FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM---GESSGQTYRLG 703 + + G V + L I+GLV + +FD + G T + Sbjct: 912 EEAFVIRTFRNGLGVFVSKLGIEGLVMFKRDN----QFDADNYTITVPSGGGKDVTISVF 967 Query: 704 DRVEVRVE---AVNMDERKIDFSLISS 727 D+VEV +E N ++ +L+ Sbjct: 968 DKVEVSIEVEKDKNTQRGRVKMTLVHP 994 >UniRef50_C1N1M6 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N1M6_9CHLO Length = 889 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 146/674 (21%), Positives = 244/674 (36%), Gaps = 90/674 (13%) Query: 79 PERLDLVKGTVIGHRDGY----GFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADR 133 + L +G + R + G + + D+ LS + + GD V + L ++ Sbjct: 230 IKAGTLHQGALRTSR--FSPWEGVVGCDAVGADILLSGRSALNRAMDGDVVAVRLLPEEQ 287 Query: 134 KGRR--------------------------------------EARIVRVLVPKTSQ--IV 153 + +V ++ + Sbjct: 288 WKKPGTRIGGGGGGGASLAPRTADDAAAAAAAPAARADGVVPTGEVVGIVRRSWRERGYA 347 Query: 154 GRYFTEAG-------VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKA 206 +P D RL I I Q + +VV + P Sbjct: 348 ASIDDATNATQTHAVRLLAIPVDRRLP-KIRIQTRQASAL-LDQRIVVVIDDWPIDSPHP 405 Query: 207 VGKIVEVLGDNMGTGMAVDIALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAK----AGRV 261 G V+ LG D L ++ + AV V L E A R Sbjct: 406 RGHYVKSLGPLGDADAETDAVLLEADVDDRLFAPAVHACVPPLPWAFDERAHLGAQPHRE 465 Query: 262 DLRDLPLVTIDGEDARDFDDAVYCEKK-------RGGGWRLWVAIADVSYYVRPSTPLDR 314 DLR L + ++D RD DDA+ C G L V IADV+ ++RP+T +D Sbjct: 466 DLRSLRVCSVDPPGCRDIDDALSCRVLVDDDDGAETGQLELGVHIADVTSFLRPNTAMDA 525 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRL----TGYKF 370 EAR RGT+ Y + + MLP+ L+ +CSL V+RL +K L +F Sbjct: 526 EARKRGTTTYLVQRRLDMLPKPLTEDICSLRGGVERLAFSVFFRFDAKTCLPVPGVSPRF 585 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFE 430 ++ + S A LTY + ++ + D L + L ++ + L K R + G ++ Sbjct: 586 TKSAIKSSAALTYQEAQELMDDETDESPLTRDLRRVL-NINRCARALRKRRVDAGALTLA 644 Query: 431 SEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDK 488 S E +F +A + + +A++++EE M+LAN++AA ++ AL R H Sbjct: 645 SPEVRFELDASTQDPLDVAMYVTREANQMVEEMMLLANVAAAEAILKAFPSHALLRRHPT 704 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P+ A +G+++ + D + D +L+ + R M QA+Y Sbjct: 705 PAPRMFDPLLKACAAVGVDIDASSSKTLADSLDAARRPGDPYFNTLLRIVATRCMSQAVY 764 Query: 549 ------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGY 602 +R H+GLA Y HFTSPIRRY D+ +HR + L E+ Sbjct: 765 CVSGAHSVNDRVHYGLAAPLYTHFTSPIRRYADVVVHRLLNAALGLERPDAS-------- 816 Query: 603 HYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVR 662 + + ++ + R + A R + F + V G V Sbjct: 817 LQDGDALKATAENINSRHRNSQSAGRASVELHTHIFFKKNKAET-DARVIRVRANGIIVF 875 Query: 663 LDDLFIDGLVHVSS 676 + I+ V Sbjct: 876 VPKFGIEAPVLFDE 889 >UniRef50_D2V5N5 Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2V5N5_NAEGR Length = 880 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 128/644 (19%), Positives = 245/644 (38%), Gaps = 60/644 (9%) Query: 72 RRQCYA----LPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLA 126 Y + + + + E + + +HGD V+ Sbjct: 255 NSGKYYKGVLRVNQYNSRNAHIKTTMKQNNGIIEEDVSVRVLVEGSADRNRAVHGDMVVI 314 Query: 127 QPLGADRKGR---------REARIVRVLVPKTSQIVGRYFTEAG----VGFVVPDDSRLS 173 + + R+V VL + V +P DSR+ Sbjct: 315 ELKPKSEWKKIGSDESRTEPVGRVVAVLERNWREYVACLEESKNNTGDYLLAIPIDSRIP 374 Query: 174 FDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI 233 I I Q ++V ++ + G V LG + L +++ Sbjct: 375 -KIRIKTKQ-KNVLENMRLIVRISDWEKKSKYPSGYYVRTLGPIGDLDTETEGLLVENQL 432 Query: 234 ---PYIWPQAVEQQVAGLKE----EVPEEAKAGRVDLRD-LPLVTIDGEDARDFDDAVYC 285 + ++ + ++P+ R D+R + +ID D DDA+ Sbjct: 433 FTSTLPFSDLALSELPPVSSGAEFKIPQAEIQKRRDIRKTHLVCSIDPIGCEDIDDALSV 492 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 +K G + V IADVSYY++ LD EAR R T+VY + + M+P +LS LCS+ Sbjct: 493 KKLSNGNIEVGVHIADVSYYIKYDGYLDLEARRRSTTVYLIDRRLDMIPTLLSADLCSIR 552 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVK 405 DRLC+ + +G + + +++S L Y + +L+ K Sbjct: 553 QGQDRLCVSVFWEFNKEGEVVDTWYGRTILNSKYALHYEQADELLK-------------K 599 Query: 406 HLEELHNLYKVLDKAREERGGISFESEE-AKFIFNAERRIERIEQTQRNDAHKLIEECMI 464 + L L ++ K R + G + E F + + +IE H + E MI Sbjct: 600 DIGALQQLGTLIQKKRLKDGALELNDLEAVSFKLDNAKNPVKIETKDDLLIHHTVAEWMI 659 Query: 465 LANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL 523 LAN A+ + A R H P + V G E+ + + + Sbjct: 660 LANAYVAKKIYDSFPVAACLRRHPYPMKDKFQQVIKVAGSRGFEIDLESGNSLSNSLDRA 719 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYDP------ENRGHFGLALQSYAHFTSPIRRYPDLT 577 E D+ +++++ R+M +A Y ++ H+GLALQ Y HFTSPIRRY D+ Sbjct: 720 EDPEDKYVNLLIRSLTTRAMSEAEYFSTGTLPVDDFVHYGLALQFYTHFTSPIRRYADIV 779 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 +HR + + + E +S ++ ++ ++ + R + A + ++W K + Sbjct: 780 VHRLLLWAINNEPN-----------PFSTSKLDEMSKYMNNVNRASKLAQMESSEWFKAN 828 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY 681 + + + +I ++ ++ + I G+++ ++ + ++ Sbjct: 829 YFREHKDTIEDAIIFNIKSNAIYIFIPTFRIKGIIYFTTKEGEF 872 >UniRef50_Q6Z6A3 Os02g0754100 protein n=8 Tax=Magnoliophyta RepID=Q6Z6A3_ORYSJ Length = 1067 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 151/726 (20%), Positives = 274/726 (37%), Gaps = 117/726 (16%) Query: 94 DGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVP--KTSQ 151 +G+ + E DL + +H + + ++ R +++ ++ + Sbjct: 262 NGHATV-PENCGKDLGEGKSEASRALHR---ICSMVYSNPSRRPTGKVLAIIKKSPRRDT 317 Query: 152 IVGRYFTE----------------------------AGVGFVVPDDSRLSFDIL----IP 179 +VG +G+ ++P DS+ ++ +P Sbjct: 318 VVGFLAPFAVCPDPEQQKNQMSMLSKRMNHRASSYFSGLILLLPTDSKFPHMVVNVSTLP 377 Query: 180 PDQIMGARMGF----VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY 235 G +V ++ ++++LG +D L + I Sbjct: 378 DSVRNHLEEGDAAKELVAARISDWNEESLYPCAHVIQLLGKGGQVKTHMDAILFENAISD 437 Query: 236 -IWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 + + + + ++P+E R DLR++ TID A D DDA+ E GG R Sbjct: 438 AEFSPESMECLPDICWKIPQEELEVRKDLRNVLTFTIDPPTATDLDDAISIEMLSGGIVR 497 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 + V IADVSY+V P T LD EA+ R TSVY + I MLP LS L SLNP VDRL Sbjct: 498 IGVHIADVSYFVHPETALDAEAQIRSTSVYTLRRKISMLPLRLSEDLVSLNPGVDRLTFS 557 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLRE-----------QYAPL 403 + G + V+SS +L+Y V ++ D + + + Sbjct: 558 IIWDIDPHGNIINRWIGRTVISSCCKLSYDLVQDLICSDGTKFKSASSLQVHGIFEQDDV 617 Query: 404 VKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECM 463 +K L L+ + K L + R + G +S E+ + F+ + +RNDA ++EE M Sbjct: 618 IKSLRCLYEISKNLKEIRFKGGALSLETAKLMIQFDEGGAPCDSFRYERNDACFIVEELM 677 Query: 464 ILANISAARFVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAE 521 +LAN+SAA + AL R H +P+ F + A G EL G + + + Sbjct: 678 LLANMSAAEVISNAFPNCALLRRHPEPNLRKSREFEAFCARNGFELDGSSSGQLHLSLSR 737 Query: 522 LLESVADRP-DAEMLQTMLLRSMKQAIY--------DPENRGHFGLALQSYAHFTSPIRR 572 + E + D P ++L + M+ A Y ++ H+ L++ Y HFTSP+RR Sbjct: 738 MKEKLKDDPVLFDILMFYASKQMQSAEYFCTADLISKRDDWAHYALSVPLYTHFTSPLRR 797 Query: 573 YPDLTLHRAIKYLLAKEQGHQGNTTETGGYH----------------------------- 603 YPD+ +HR + ++ E+ + + G + Sbjct: 798 YPDIIVHRTLNAVIEAEKMYLKHRRSLTGQNGFNTASCEMMHGCFTGLQFSKDAAESKEG 857 Query: 604 -------------YSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGV 650 S + + ++ +HC+ + + A + + V Sbjct: 858 SEALSAAAKKFKVPSPDNLGEVAEHCNERKWASRRAEDAGQKLYMWALIKRKEVLVANAR 917 Query: 651 ISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT----------Y 700 + + V + L ++ +H ++ + + L+ +S Y Sbjct: 918 VLGLGPKFMSVYVPKLAMERRIHYDEVEGLSIEWLEATGTLVLDSCRNRPPQRRGNQVKY 977 Query: 701 RLGDRV 706 R + V Sbjct: 978 RAFEEV 983 >UniRef50_C0QZ67 VacB, Exoribonuclease R n=2 Tax=Brachyspira RepID=C0QZ67_BRAHW Length = 661 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 181/513 (35%), Positives = 271/513 (52%), Gaps = 17/513 (3%) Query: 216 DNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA-GRVDLRDLPLVTIDGE 274 D +I + + +P +P+ ++ L + + R+DLRD+ VTIDG Sbjct: 109 DINNAKKDAEIIAKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGA 168 Query: 275 DARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLP 334 D++DFDDA+ EK ++L + IADVS++V + LDREAR RG SVY V PM P Sbjct: 169 DSKDFDDAISIEKL-NDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFP 227 Query: 335 EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQ 394 LSNG+CSLN V R M +T+ +KG + F+++V+ S RLTY +L G + Sbjct: 228 HELSNGICSLNEGVSRFTMTVFVTIDNKGNVKESTFHKSVIKSSRRLTYDYAQDVLDGIE 287 Query: 395 DLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRND 454 + LV+ L+ ++ K+L + R + G I F E + I + + +R + Sbjct: 288 QDEDW---LVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKE 344 Query: 455 AHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKP 514 HK+IEE M++AN A+ ++ K +++R+HD P E + +F + G L Sbjct: 345 THKIIEELMLIANCEVAKRLKNIKG-SIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDADG 403 Query: 515 EPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYP 574 D+ +ES+ +PD ++L T+LLRSMKQAIYD N GHFGL + Y HFTSPIRRY Sbjct: 404 NL-DFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYT 462 Query: 575 DLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWL 634 DL HR +K L + + Q CS ER A E R + Sbjct: 463 DLLTHRLLKQSLEGVNNLKPTMQQF---------YTNSAQWCSKTERIAVECERSLDKVK 513 Query: 635 KCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE 694 FM D+VGN + G++S +T FG FV ++D I+GL+ ++L + +YR+D+ Q E Sbjct: 514 AARFMKDKVGNEYNGIVSGITNFGMFVEIEDRGIEGLIRYATLKS-HYRYDEHEQAAYSE 572 Query: 695 SSGQTYRLGDRVEVRVEAVNMDERKIDFSLISS 727 + Y LGDR+ + V V++ E IDF S Sbjct: 573 EDAKWYTLGDRIRIVVYKVDVKELFIDFIPASE 605 >UniRef50_Q09568 Uncharacterized ribonuclease F48E8.6 n=3 Tax=Caenorhabditis RepID=YR86_CAEEL Length = 817 Score = 481 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 156/715 (21%), Positives = 267/715 (37%), Gaps = 115/715 (16%) Query: 79 PERLDLVKGTVIGHRDGY--GFLRVEGR--KDDLYLSSEQMKTCIHGDQVLAQPLGA--- 131 E + KG + + Y FL D+ + + + GD V + Sbjct: 47 IEDGSMFKGVLRINPKNYQECFLDHPKGTNHPDVLVLGQDRNRAMQGDVVAVKIKPKEDW 106 Query: 132 --------------DRKGRREAR------------------------------------- 140 + R + Sbjct: 107 LVNYVEYVKWWAEHKKGDRNSGKTDNNSPNKTEKRCLRNEIQDNGVTSDEVPDSCLITIG 166 Query: 141 -IVRVLVPKTSQIV-GRYF----TEAGVGFVVPDDSRLSFDILIPPDQ-------IMGAR 187 IV +L K ++ G+ + V DSR+ ILIP Sbjct: 167 AIVHILEKKHFRVAAGKLQLMPNSANPNVLFVATDSRVPR-ILIPKSDVDKEFFSRPKDF 225 Query: 188 MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVA 246 F+ ++T A G++V++LG + + + H+I + + + + Sbjct: 226 ERFLYTAKITDWRAESVYADGRLVKLLGMSGEIDTETERIVYEHQIDHREFSDECLESLP 285 Query: 247 ---GLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG------GGWRLWV 297 +VP+ R D R + TID + ARD DDA++ + G + V Sbjct: 286 ITTAENWKVPDAEFEYRRDFRSDIVFTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGV 345 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADV+++++ T LD+ A RG S Y VIPMLP +L LCSLNP VDRL Sbjct: 346 HIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVF 405 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA-----------PLVKH 406 +S + L F +V+ S +L Y ++ + + + Sbjct: 406 KMSYEAELYDVWFGRSVIRSRVKLAYEHAQDFIENPEKDFTCDELPDISDGNTPFEIKEK 465 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA 466 LH + +VL + RE+ G + E KF + +++ + + + D++KL+EE M+LA Sbjct: 466 TLMLHRIAQVLRQKREDSGALRIELPRLKFALDEDKKPQGVSIYEIKDSNKLVEEFMLLA 525 Query: 467 NISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELL-- 523 N+ A+ + + E AL R H P + I A +G L G Sbjct: 526 NMEVAKKIAENFPEHALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQG 585 Query: 524 ESVADRPDAEMLQTMLLRSMKQAIYD------PENRGHFGLALQSYAHFTSPIRRYPDLT 577 +S D +++ ++ ++ M+QA Y HF L + Y HFTSPIRRYPD+ Sbjct: 586 KSRLDMCIRQVISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVI 645 Query: 578 LHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCD 637 +HR + L EE+ ++ C+ + + EA+ + A Sbjct: 646 VHRQLAAALGY----------NERSERVPEEIQEICTRCNDTKLASKEASDESAMLYFGV 695 Query: 638 FMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLM 692 F+ + V+ V F V + + + V+V + D F++ ++L Sbjct: 696 FIHQTGPMKCQAVVLGVMDLSFDVLIVEYGVVKRVYVDKMKRD---FNKSTEKLT 747 >UniRef50_Q09B28 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09B28_STIAU Length = 630 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 181/650 (27%), Positives = 285/650 (43%), Gaps = 37/650 (5%) Query: 85 VKGTVIGHRDGYGFLR----VEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREAR 140 V G + H G+GFL G ++ ++ + + D V A GR A Sbjct: 10 VTGRIDVHPRGFGFLVVQPPPSGEVLSAFIPPPELASFLADDTVSATV-SQGADGRWTAS 68 Query: 141 IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRP 200 + +L Q+ G G F+ D S D + + G VV + + Sbjct: 69 GLSLLQRPREQVYGEVVLRKGTPFLRIDREVASSDWPLETGTA--VQTGDAVVARIVEGK 126 Query: 201 TRRTKAVGKIVEVLGDNMGTGMAVDI--ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKA 258 VL + G+ + + H++ +P V ++ + A Sbjct: 127 A-----------VLLHRLEPGVDRSVARIIARHDLRRDFPPEVLEEARAV--RGVPHALG 173 Query: 259 GRVDLRDLPLVTIDGEDARDFDDAVYCEKK-RGGGWRLWVAIADVSYYVRPSTPLDREAR 317 R DLR LP VT+D RD DDA+ G RL V+IADV+ +V + LDR AR Sbjct: 174 ARRDLRALPTVTVDAPSTRDIDDAISVLPAGEDGALRLLVSIADVAEFVTEGSALDRAAR 233 Query: 318 NRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSS 377 RGTSVY V+PMLPE LS+ SL P +R C+ E+ + ++G +T E+++ S Sbjct: 234 ERGTSVYLAGHVLPMLPEELSSHWLSLVPGEERRCLSVELRIDAEGHVTAADVSESLIRS 293 Query: 378 HARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFI 437 ARL Y +V L + P+ + + L AR RGG+ EEA+F Sbjct: 294 WARLNYDEVAAYLDRG-AVSAAMEPVREAMPWFRAASARLAVARAGRGGMELAREEARFT 352 Query: 438 FN-AERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITS 496 F+ ++ IE T AH+LIE M+ AN + A ++E PA+FR+ D+P + + Sbjct: 353 FDAGTGQVSGIENTPPTTAHQLIERFMVAANEAIASWMEDRGLPAVFRVQDEPDRQRVAD 412 Query: 497 FRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHF 556 + G E G + P A + L+++L RS+ A Y GHF Sbjct: 413 LSAFAHHSGFEAGFGGRLTPLALAAFDRQITGCAAEPALRSVLRRSLGFARYTVVPSGHF 472 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA + Y HFTSPIRRY DL +HR +K L + + QL Sbjct: 473 GLAARRYLHFTSPIRRYADLAVHRTLKQYLRGRRDFAHQDP----------AVEQLAVRL 522 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + + + A +D L+ M VG + I+ V FG ++LD + ++G+V + S Sbjct: 523 NARAKASSRAEQDRHRVLEARLMASHVGKSYPARITRVKPFGLLIQLDGMLVEGVVPMDS 582 Query: 677 LDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS 726 L +R D L+G+ +++ +G + +V + + +I+F+L Sbjct: 583 LPGGPFRPDARETSLVGKE--RSFTVGMPLMAKVVSTDEVLGRIEFALAE 630 >UniRef50_Q4T2G1 Chromosome undetermined SCAF10273, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T2G1_TETNG Length = 1074 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 163/686 (23%), Positives = 255/686 (37%), Gaps = 106/686 (15%) Query: 79 PERLDLVKGTVIGHR---------DGYGFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQP 128 + ++GTV + DG + + + HGD V + Sbjct: 226 IKSGRYLQGTVKISKHHSEAVVTTDGSSHKDAADLSGSVLVCGIKNRNRATHGDVVAVEL 285 Query: 129 LGADR-KGR-----------------REARIVRVLVPKTSQIVGRYFTEAG--------- 161 L +GR R+V +L V + G Sbjct: 286 LPRGEWRGRVAALAEGPGEESESRAMPTGRVVGILQRNWRDYVVTFPPREGPQSQGRGPK 345 Query: 162 VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTG 221 VP D R+ I + Q + G VVV + + G +V VLG Sbjct: 346 HVLTVPWDRRIP-KIRVGTQQADALQ-GHRVVVRIDSWESTSQYPNGHMVRVLGRAGELE 403 Query: 222 MAVDIALRTHEIP-YIWPQAVEQQVA----GLKEEVPEEAKAGRVDLRD-LPLVTIDGED 275 + L + I + A +++ V + A R DLR+ + +ID Sbjct: 404 TEIQTVLVENGIHLSPFSDAQLREMPVSSPERPWRVDPDQAAARRDLRESHLVFSIDPRG 463 Query: 276 ARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPE 335 D DDA+ + GG L V IADV+++V+ + D EAR R T+ Y + MLP Sbjct: 464 CEDVDDALSVRRLDGGLLELGVHIADVTHFVKEGSLTDVEARLRATTYYLADRRYDMLPP 523 Query: 336 VLSNGLCSLNPQVDRLCMVCEMTVSS-KGRLTGYKFYEAVMSSHARLTYTKVWHILQGD- 393 VLS+ LCSL V R M + + + F V+ S +L Y +L G+ Sbjct: 524 VLSSDLCSLLGGVGRYAMSVMWQLDAHTLAVKDVWFGRTVIRSSYQLHYELAQALLNGEQ 583 Query: 394 -----------QDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAER 442 ++ + A L + LE L + + L R+ G + E E + + ++ Sbjct: 584 AEVPELAGLGPEERDARLAKLTQALEMLTQVARRLRAHRDRGGALELEGVEVRAQLDKDK 643 Query: 443 RIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVL 501 I + Q + H+ + ECMI AN AR +++ AL R H P E Sbjct: 644 NITALVPRQPLEVHETVAECMIHANHWVARRIQEAFPHQALLRRHPPPRQEVFGQLVDSA 703 Query: 502 AELGLELPGGNKPEP-------------------------RDYAELLESVADRPD---AE 533 A G + + P ++ AE L+ D D Sbjct: 704 AAKGFAITTRHTFSPRGGCLPLNLQRMSPLIFCFYLCRSNKELAESLDRAVDPQDALVNR 763 Query: 534 MLQTMLLRSMKQAIYDPE---------NRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKY 584 +L+ M +M QA+Y + H+GLAL+ Y HFTSPIRRY D+ +HR + Sbjct: 764 LLRMMATSAMSQALYFSTGAQDQAQDQYQYHYGLALEKYTHFTSPIRRYADMVVHRLLAA 823 Query: 585 LLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG 644 ++ E+G E GG S E+ +L QH + R AD A + +C + +Q Sbjct: 824 AISLEKG-----EEPGGALASNRELEELAQHINQKNRAADTAQKLSTVLFQCLYFKEQDP 878 Query: 645 NVF-----KGVISSVTGFGFFVRLDD 665 VI S+ G V + + Sbjct: 879 QTDPRCTADAVIYSIKNDGVLVFVPE 904 >UniRef50_A0Y8Y7 Exoribonuclease R n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8Y7_9GAMM Length = 663 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 192/672 (28%), Positives = 309/672 (45%), Gaps = 39/672 (5%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M + L ++ + + + +G V G + +GF+ + ++ ++L+ ++M G Sbjct: 1 MFDNSTLSQLKQLKKDIEDSKEYAEGIVKGTQRKFGFVVLADGRE-IFLNPDEMTKVFPG 59 Query: 122 DQVLAQPLGADRKGRR-------EARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSF 174 D V K + + +L + GRY + FV PD +L+ Sbjct: 60 DNVKILITTEQSKTKDKNAKPKVSGVLQALLQSPLKEFNGRYIIKGQGHFVEPDLPQLNR 119 Query: 175 DILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP 234 I IPP A G + +L++ P K KI+EV+G+ G+ + ++ Sbjct: 120 WIFIPPAARKNAAAGDYIRCKLSRHPYPNEKPQAKILEVIGNLEKKGIETEYVTSKFQLD 179 Query: 235 YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWR 294 +W E+ +A + + R D++D+P VTID RD DDA+Y K G WR Sbjct: 180 PVWKDNWEESLADI-------DFSQRKDMQDIPFVTIDAASTRDMDDALYVSKSDNG-WR 231 Query: 295 LWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMV 354 L VAIAD ++ ++ LD++ R S Y P IPMLP L+N LCSL P R ++ Sbjct: 232 LLVAIADPGAFIISNSELDKQIAQRAISTYMPGYAIPMLPAKLANDLCSLAPDQVRPALI 291 Query: 355 CEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA--PLVKHLEELHN 412 C++ +++ G + + EAVMSS A+L+Y V L D L +L Sbjct: 292 CQIDINATGDIVSHNIVEAVMSSKAKLSYDDVSRFLDQRDDTITSADCSNHGHVLTQLKE 351 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 L L R+E + + + + NA +++RIE +N A +++EECMILAN + Sbjct: 352 LSDALLINRKENHLVIPNRPDLRLVLNANGKMDRIELQNKNSASQVVEECMILANRCVTQ 411 Query: 473 FVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA 532 + + A+F H E + + E L L + +P Y +++S+ D Sbjct: 412 IL---DDDAIFVSHPGFRPERVADVCKLAEEQ-LSLTDIDVTQPDGYRHIMKSIDDDALD 467 Query: 533 EMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGH 592 L+ +L R + +A + HFG+ L SY FTSPIR+Y DL +HR IK L Sbjct: 468 FPLRAVLSRLLSRARLSNKRLPHFGMGLSSYTTFTSPIRKYTDLLVHRIIKEKLRGLPPT 527 Query: 593 QGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVIS 652 + S E++ + + + +A + WLKC F+ VG F G +S Sbjct: 528 RC----------SDEQLEAI----QQRQDNSRQARSQMEQWLKCQFIQPLVGQNFIGRVS 573 Query: 653 SVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEA 712 + GF VR+D+ I+G V L D Y FD RL +S T L +E+ V+ Sbjct: 574 QINSNGFTVRIDENLIEGFVETRILP-DKYSFDP--MRLRLKSKTLTIELDQAIEIIVKE 630 Query: 713 VNMDERKIDFSL 724 V+ D+R I F+L Sbjct: 631 VDCDQRSIRFTL 642 >UniRef50_P54084 Ribonuclease R (Fragment) n=35 Tax=Gammaproteobacteria RepID=RNR_THIFE Length = 439 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 219/429 (51%), Positives = 283/429 (65%), Gaps = 4/429 (0%) Query: 3 QDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAM 62 +DP ERE EKY PI SRE+IL +L +P + +++ EL + E+ E LRRRLRAM Sbjct: 13 RDPMFEREKEKYERPIVSREYILSYLEGTGRPLTLEDIIAELEV-AEDDQEALRRRLRAM 71 Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGD 122 ERDGQLV RR Y + ++LV+GTV H DG+GFL E DL+LS +M+ HGD Sbjct: 72 ERDGQLVRNRRGAYGIVAAMELVRGTVSAHPDGFGFLIPEAGGKDLFLSPREMRKVFHGD 131 Query: 123 QVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQ 182 +L + +G DR+GR E +VR+L IVGRY+ + GV +VVP+D R+ + + + Sbjct: 132 TILGRAVGEDRRGRIEGAVVRILERALKHIVGRYYADNGVHYVVPEDRRIPQEFAVVEGE 191 Query: 183 IMGA--RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240 G G +V++E+TQ P R G +VE+LG++M GM V+IA+R + +P+ WP Sbjct: 192 GEGLTPVHGQIVILEITQYPDGRNMPQGHVVEILGEHMAPGMEVEIAVRNYGLPHQWPDE 251 Query: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 V ++ E VPE KAGR DLRDLPLVTIDG DA+DFDDAVY E G +RL VAIA Sbjct: 252 VLAEIKQFSETVPETMKAGRRDLRDLPLVTIDGADAKDFDDAVYAEVIENG-FRLTVAIA 310 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV+ YV P + LDREA RG SVYFP +VIPMLPE+LSNGLCSLNP VDRLCM CEM + Sbjct: 311 DVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSLNPHVDRLCMFCEMEMD 370 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 + GR TG++F ++ S R TY +V IL GD +LR Q A +V HLE LH+LY+ KA Sbjct: 371 AAGRSTGFRFDRGIIGSQRRFTYDEVAAILAGDAELRAQDAAMVPHLEALHSLYESFAKA 430 Query: 421 REERGGISF 429 RE RG I F Sbjct: 431 RERRGTIEF 439 >UniRef50_B9PKJ2 Mitotic control protein dis3, putative n=1 Tax=Toxoplasma gondii GT1 RepID=B9PKJ2_TOXGO Length = 1149 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 145/697 (20%), Positives = 261/697 (37%), Gaps = 116/697 (16%) Query: 138 EARIVRVLVPKTSQIVGRYFTEAGVGF-------------VVPDDSRLSFDILIPPDQIM 184 E ++V ++ + G +P D R+ I++ Q Sbjct: 475 EGKVVGIIRKNAREFCGTIRPFDNPFRTETATSGLPTEVVFIPADPRIPN-IILKTRQYE 533 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQ 243 + +V + G E+LG+ ++ LR + + A + Sbjct: 534 QL-LNKRIVAVIDSWDRFSRNPRGHWTEILGEFGSAEAEANVILREQGVVSRDFSLASLR 592 Query: 244 QVAGLKE---EVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300 + ++ EE + GR+DLR + + ++D +D DDA+ E G +R+ V IA Sbjct: 593 CLPANTWTFADMSEEDRKGRLDLRHVCVCSVDPPGCKDIDDALSLEVLENGNYRVGVHIA 652 Query: 301 DVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360 DV+Y+++ T LD EA R T+VY + MLP +L+ LCSL DRL ++ Sbjct: 653 DVTYFLKEGTALDEEASERCTTVYLVERRTDMLPSLLTTDLCSLVGNQDRLAFSVLWEMT 712 Query: 361 SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKA 420 +G + F++ + S A LTY + +++ D E L ++L L + KV+ + Sbjct: 713 PEGDIVSSSFHKTFIHSRAALTYAEAQNMIDDPNDKSE----LAENLRRLLAISKVIRRK 768 Query: 421 REERGGISFESEEAKFIFN-----------------------------AERRIE------ 445 R E G + S + + I + Sbjct: 769 RTEAGALQLASPDVQIIRDTLKDNRDDKTQPPVKPTETRRGDITSEKNENGEKGERAKEC 828 Query: 446 -----------RIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPSTEA 493 I Q + ++++E+ M+LAN + A + +L R H P + Sbjct: 829 YAEEVVQEEASDIALYQARETNRMVEDFMLLANTTVAEKIVSYFPSASLLRRHPDPKEKQ 888 Query: 494 ITSFRSVLAELGLE-LPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN 552 + + + +L G+E + + A +++ + R M QA+Y Sbjct: 889 LEALKELLKSRGIENFEFSSSKRLAASLNAVAKAA-PELDFLVRILTTRCMNQAVYFSSG 947 Query: 553 -----------------------------RGHFGLALQSYAHFTSPIRRYPDLTLHRAIK 583 H+GLA Y HFTSPIRRY D+ +HR + Sbjct: 948 DILSNAHSAKQSLTAALSSSSSSVDISPYFHHYGLAAPLYTHFTSPIRRYADVVVHRMLA 1007 Query: 584 YLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQV 643 + E + +++ Q + ++ R A A R+ + + ++ Sbjct: 1008 AAIG--------IAEVPRVCRNKQQLSQQCELLNVKHRNAQIAGRNSVQYHVYMYFKNKG 1059 Query: 644 GNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLG 703 G ++ V G V + ++G+V + Y FD Q L+ SSG+T ++ Sbjct: 1060 AKEAVGTVTKVKKNGAMVYVHKYGLEGVVF---FNEREYSFDADKQHLVNRSSGETVQIF 1116 Query: 704 DRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE 740 D + VR+EA E+ DF + + R R Sbjct: 1117 DALLVRIEA----EQSNDFRPSVAMKLIRKATDQERA 1149 >UniRef50_UPI0000D56C52 PREDICTED: similar to exosome complex exonuclease RRP44 n=1 Tax=Tribolium castaneum RepID=UPI0000D56C52 Length = 844 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 133/666 (19%), Positives = 260/666 (39%), Gaps = 56/666 (8%) Query: 80 ERLDLVKGTVIGHRDGY--GFLRVEG-RKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG 135 E +L+KG + + ++ E K D ++S GD+V+ + Sbjct: 147 ETRELMKGYIRINPKNAKESYVGNEDVSKTDYMITSVLDRNRAFDGDEVVLRLKTETEDK 206 Query: 136 RREARIVRVLVPKTSQ----IVGRYFTEAGVGFVVPDDSRLSFDILIPP-------DQIM 184 ++ +V + + + P D R+ I IP Sbjct: 207 KKTMEVVYITKKIHPRTAVGFLAPIEKNKEYALFTPRDKRIP-KIKIPRISWPSGFQSKP 265 Query: 185 GARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQ 243 + +V++T A+G I E LG + + LR + P + + Sbjct: 266 QLYQDILFIVKITDW-KDVKYAIGTITENLGLSGDLKIESLAILREFCLDPTPFGDDIRP 324 Query: 244 QVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVS 303 + ++ R DLR + TID ARD DDA+ C++ G + + V I+D S Sbjct: 325 FLPK-STKISTSDLKNREDLRKECVFTIDPITARDLDDALSCKELPNGNYEVGVHISDAS 383 Query: 304 YYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKG 363 +++ +T LD +++ T++Y V MLP L CSL P D+L ++ G Sbjct: 384 FFLPENTRLDEIVKSKATTIYMVDSVYHMLPVELC-FHCSLLPGEDKLAFSVFWELTPTG 442 Query: 364 RLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYA-----------PLVKHLEELHN 412 + ++ +V++S +L Y ++ E+ L K + +L Sbjct: 443 DIVDFRIKRSVINSCVQLAYEHAQVMIDDPDRKFERDELPEIYNGFNAHDLSKRVNDLQR 502 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNA-ERRIERIEQTQRNDAHKLIEECMILANISAA 471 + L + R + G + + F+ + + + AH+LIEE M+LAN++ A Sbjct: 503 IAVCLREKRRQNGSLKINQIKIGFVLDPATGEPKEFYICENKPAHRLIEEFMLLANMTVA 562 Query: 472 RFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530 +++ + + A R+H+ P +T + L LGL + + S D Sbjct: 563 KWINEAYPDLAFLRLHEAPKPTMMTELQKSLETLGLHIDISTSGGIQASLNKYISEDDFG 622 Query: 531 DAE--MLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 A +L +L + MK+A Y + + H+ L++ Y HFTSPIRRY D+ +HR Sbjct: 623 KARMIVLNHLLAKPMKRARYFCAGALEEELDYSHYALSIPIYTHFTSPIRRYADIMVHRL 682 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD 641 + L + ++ EE+ + + C+ + A A +D F+ Sbjct: 683 LAASLNYREKPT----------WAPEEVATIAETCNRQKYHAKRAGEASSDLFLAHFVEK 732 Query: 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDY-YRFDQVGQRLMG---ESSG 697 + V+ V + ++ ++ + ++ +++ R E++ Sbjct: 733 NQPVIENAVVVDAKERSIDVIVIRTGSVVRIYTNNFGDKVTWKSEEIKVRKSSSDEENAK 792 Query: 698 QTYRLG 703 + +++ Sbjct: 793 KMWKIF 798 >UniRef50_Q55FB1 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55FB1_DICDI Length = 1504 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 143/704 (20%), Positives = 258/704 (36%), Gaps = 109/704 (15%) Query: 80 ERLDLVKGTVIG--HRDGYGFLRVEG--------------RKDDLYLSSEQMKTCIHGDQ 123 + +++ G + H F+++ + + +HGD+ Sbjct: 468 KSGNIISGKIHMNLHNREESFVKISSSNGIATNQTLSGFHGDKVMIIGKFNQNRAVHGDK 527 Query: 124 VLAQPLGADRK--------------------------------------GRREARIVRVL 145 V L D+ +++ + Sbjct: 528 VAVSLLPEDQWLPYDSSLNLDDDDDDDNDNSNDDNSNDEEYFKNNNDKLKIPTGKVIGIF 587 Query: 146 VPKTSQIVGRYFTEA----GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPT 201 +G +VP D R+ I +P +G +V+ + Sbjct: 588 QRNWRDYIGTVEKNTSLFTNFLMIVPFDYRIPL-IRVPTKNPSQ-YLGKRLVIRMDSWDL 645 Query: 202 RRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPY-IWPQAVEQQVAGL----KEEVPEEA 256 +G V +G++ + + H+I WPQ++ + + ++P E Sbjct: 646 NSNYPMGHYVSSIGESGSLETELSALMVEHDISLKQWPQSILKCLPESSDQSPWQIPPEE 705 Query: 257 KAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREA 316 KA R L + +++ID ++D DDA+ + V IADVS++V+ +PLD EA Sbjct: 706 KAYRRQLTNHHIMSIDPLGSKDIDDAISIGYPTNDIIEIGVHIADVSHFVKEGSPLDLEA 765 Query: 317 RNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV----SSKGRLTGYKFYE 372 + RGT++Y P + MLP VLS +CSL + R M + + F Sbjct: 766 KRRGTTIYLPDRRFDMLPAVLSEDVCSLRGGLPRCAMSVVWQFKRNPNKTYEIVDTWFGR 825 Query: 373 AVMSSHARLTYTKVWHILQGDQDLREQYA-----------------------PLVKHLEE 409 ++ S A L Y I+ G + + K L E Sbjct: 826 TIIHSSAELHYQLAQDIIDGKIVDGKDKDSDVTGGGARAGYKHRIFNGITISDIKKDLLE 885 Query: 410 LHNLYKVLDKAREERGGISFESEEAKFIFNAER--RIERIEQTQRNDAHKLIEECMILAN 467 L ++++ L K R + G + ES E +F FN++ + ++I + H L+ E MILAN Sbjct: 886 LCSIFRQLKKERVKNGALELESIEVRFKFNSKDSSQPKKIILKNDLEIHHLVAEYMILAN 945 Query: 468 ISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAELLES 525 A + AL R H KP+ S +S + G +L + + A ++S Sbjct: 946 SHVATKIHSVFPSSALLRRHPKPNQIDFKSIKSYFSYCGFQLLTKTNKQLQESLASAVDS 1005 Query: 526 VADRPDAEMLQTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 D ++L+ ++ + +A+Y + H+GLA+ Y HFTSPIRRY D+ +H Sbjct: 1006 GGDVYVNKILKLKIVNVVSEAVYFSTGSVNVSEFYHYGLAIDKYTHFTSPIRRYSDIIVH 1065 Query: 580 RAIKYLLA-------KEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVAD 632 R + L + N Y + QL H ++ R + RD + Sbjct: 1066 RQLWNSLNQSNGKFGGKSSIIDNNNNNDQSSYDNFSITQLTDHLNIRNRASKTVQRDATE 1125 Query: 633 WLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + + +I+ + GF + + + V + Sbjct: 1126 LFQSLYFKLFPKENVLAIITDIRSNGFVCFIPEFGLRSRVFLKK 1169 >UniRef50_UPI00015B4E71 PREDICTED: similar to ribonuclease n=1 Tax=Nasonia vitripennis RepID=UPI00015B4E71 Length = 961 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 134/693 (19%), Positives = 273/693 (39%), Gaps = 67/693 (9%) Query: 76 YALPERLDLVKGTVIGHRDGY--GFLRVEGRKDDLYLSS-EQMKTCIHGDQVLAQPLGAD 132 + PE +++ G + + Y ++ + DL + + + GD V D Sbjct: 260 FQDPENPNVIDGHIRINPRCYQNAYVSLATGDQDLLIVGLKDRNRALEGDLVAVIINPKD 319 Query: 133 RKGR-------REARIVRVLVPKT-SQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIM 184 + R R ++ +L + VG + F+ P DSR+ + P Sbjct: 320 KWFRLTETTWQRTGTVLSILEKAHPRKAVGYLKKQDVFVFLQPRDSRVPQLRINPKTVPK 379 Query: 185 GARMG------FVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIP-YIW 237 + + ++ + A G+IV+++G + L +++ + Sbjct: 380 HFYDNPDQFKETLFLCDIVDW-KKVAFAEGEIVQIVGSKGDLSVETKAILLENDLILTPY 438 Query: 238 PQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWV 297 + Q + E A R DLR+ + TID A D DDA+ C+ G + + + Sbjct: 439 EDELLQDLPPSDYIPTEADLADREDLRETCIFTIDPATAVDLDDAMSCKLLENGNFEVGI 498 Query: 298 AIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEM 357 IADV++++ +PLD++ R T+VY V MLP+ L CSL P D+L + Sbjct: 499 HIADVTHFLEAFSPLDKKVAERATTVYMVDNVYHMLPKQLCL-ACSLLPGQDKLAFSVIL 557 Query: 358 TVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQY-----------APLVKH 406 ++ + +F + V++S ++ Y + ++ + E+ + LVK Sbjct: 558 EMTPSAEIVSSRFAKTVINSCCQMAYGQAQIMIDDESYDWEKDGSLTIAGNYKPSDLVKV 617 Query: 407 LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR-IERIEQTQRNDAHKLIEECMIL 465 + L+N+ L + R + G + + + + + R + +R +++ LIEE M+L Sbjct: 618 VRNLYNISMELKRKRFDEGALRIDQPKLIVFLDKDTRLPSSYKLEERIESNSLIEEFMLL 677 Query: 466 ANISAARFVEK-AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEP-RDYAELL 523 AN++ A+++ + E +L R H +PS + R++L + G+ L + + ++ Sbjct: 678 ANMTVAKYLYETLPEVSLLRSHPEPSMRILQKTRNLLKKFGVHLDVESAGTLHKTLSKYQ 737 Query: 524 ESVADRPDA----------EMLQTMLLRSMKQAIY-------DPENRGHFGLALQSYAHF 566 ++ D + ++ ++ +SM +A+Y E H+ L + Y HF Sbjct: 738 VNLNDSGNDGSLDVAYYNMMVINSLCAKSMTRAVYKCSASVKTKEALRHYALNAEYYTHF 797 Query: 567 TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEA 626 TSPIRRYPD +HR + + + +S + ++ +C+ + A A Sbjct: 798 TSPIRRYPDCVVHRLLYASIKNQPL---------PSEWSSKICARVATNCNTKKYLAKMA 848 Query: 627 TRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRF-- 684 + + ++ V L D + ++ S + Sbjct: 849 QEQSNALYFTYMLDLRGSMNALAIVMDVKERSADAMLCDTGLKVRLYFSDTIEETTTEFT 908 Query: 685 --DQ---VGQRLMGESSGQTYRLGDRVEVRVEA 712 D+ V Q + + V++ Sbjct: 909 TNDEVPTVKLTWKERQVDQVINIFTILPVKITK 941 >UniRef50_A7S7H2 Predicted protein n=3 Tax=Eumetazoa RepID=A7S7H2_NEMVE Length = 1048 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 157/766 (20%), Positives = 272/766 (35%), Gaps = 105/766 (13%) Query: 79 PERLDLVKGTVIGHRDGY---GFLRVEG-------RKDDLYLSS-EQMKTCIHGDQVLAQ 127 + +KG + ++ F++ + D+ + +HGD V+ + Sbjct: 239 IKSGRYIKGNLNVNKHNSQTEAFIQKRDISSGQGTSESDVLIYGVANRNRAVHGDVVVVE 298 Query: 128 PLGADRKGRR----------------------EARIVRVLVPKTSQIVGRY--------- 156 L + R +V VL V + Sbjct: 299 VLPKSQWKGRSTALKLHEEDAEDSGNSSDVMMTGHVVGVLQRNWRDYVVSFAEDVVSQDQ 358 Query: 157 FTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGD 216 AG VVP D R+ I I Q+ R V+ + G V LG Sbjct: 359 RRSAGKVVVVPWDYRIP-KIRISTRQVEALR-DQRYVIRIDSWEVDSMYPSGHFVRALGL 416 Query: 217 NMGTGMAVDIALRTHEIP-YIWPQAVEQQVAG----LKEEVPEEAKAGRVDLR-DLPLVT 270 V + H + + +++ + EE R DLR + + Sbjct: 417 IGDLETEVATLMVEHTLSAPPFTDGQLKELPSDSPTEPWVISEEEVCRRRDLRKSHLVFS 476 Query: 271 IDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVI 330 ID + D DD + + + G L V IADV+++V P + D EAR+R TSVY + Sbjct: 477 IDPKGCEDVDDTLSIRQLKDGRLELGVHIADVTHFVHPGSLTDAEARSRSTSVYLADRRY 536 Query: 331 PMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL 390 MLPE+LS LCSL VDRL M + S + + ++ S +L Y I Sbjct: 537 DMLPEILSANLCSLISGVDRLAMSVMWVLGSNYDVIKTWYGRTIIRSSYKLFYEVAQAIA 596 Query: 391 QGDQDLREQYAPLVK------------------HLEELHNLYKVLDKAREERGGISFESE 432 G + + + + +L ++ + R+ +G + ++ Sbjct: 597 DGVVPNEDLLKEIPELQGLDSSAANKGIQDIRWSVLKLMDIARYYKARRQTQGAVELDNP 656 Query: 433 EAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEK-AKEPALFRIHDKPST 491 E K + N ++ I + Q + H+ IEECMILAN A+ + + +L R H P Sbjct: 657 EVKVLLNEKKDILDLIDKQGLEIHETIEECMILANHWVAKRLVQTFPTCSLLRRHPLPRQ 716 Query: 492 EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY--- 548 + + G + + + + E D ++L+ + +++M A+Y Sbjct: 717 QYFENLMQCAKAKGFTIKTSSNKLLAESLDKCEDPDDPTFNKLLRILAVQAMSSALYFST 776 Query: 549 ---DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYS 605 + H+GLAL Y HFTSPIRRY D+ +HR + L ++ + Sbjct: 777 GSVSVDEFVHYGLALDRYTHFTSPIRRYADVIVHRLLMAALG---------SDDQSQVLN 827 Query: 606 MEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVF---KGVISSVTGFGFFVR 662 EE+ +L QH + + A V + F + VI + G V Sbjct: 828 NEELEELAQHMNDKHKVGHTAAGSVELFQTLFFNSMSEDDERLLADAVIVGLRANGLLVY 887 Query: 663 LDDLFIDGLVHVSSLDNDYY--------RFDQVGQRLMGE-------SSGQ-TYRLGDRV 706 + V++ + G + GE SSG T++L + V Sbjct: 888 IPRYCFKSAVYLKDKNGLVVTPGAGKDCVTHGPGSIVRGEFAVELHTSSGVFTFKLFNHV 947 Query: 707 EVRVEAV--NMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKK 750 +V++ + + +L+S + +K Sbjct: 948 KVKISVATSRAHAQSLRVTLVSFQTRTGPPPGELNSGELSKANKRK 993 >UniRef50_Q8H885 Os03g0129200 protein n=3 Tax=Magnoliophyta RepID=Q8H885_ORYSJ Length = 896 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 149/710 (20%), Positives = 257/710 (36%), Gaps = 125/710 (17%) Query: 86 KGTVIGHRDG--YGFLRVEGRKDDLYLSSE-QMKTCIHGDQVLAQPLGADRKG------- 135 +G + +R ++ E D++ + M GD V + L D+ Sbjct: 238 QGKLRVNRYNPFEAYVGSESIGDEIVIHGRSNMNRAFDGDIVAVELLPQDQWHESKSFIA 297 Query: 136 ----------------------------------------RREARIVRVLVPKTSQIVGR 155 R R+V ++ + G Sbjct: 298 DDDEDDEEDVHLAPNSADDAPRKANPTQSTAASSADSVSSRPVGRVVGIIKRNWNSYCGS 357 Query: 156 YFT------EAG--VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAV 207 G V D R+ I I Q+ + ++V + Sbjct: 358 LEPMPMPAGSGGVAHALFVSKDRRIP-KIRIQTRQLGNL-LDKRIIVAVDSWDVLSRYPS 415 Query: 208 GKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPEEAKAG--RVDLR 264 G V L ++I + V + L + E A R DLR Sbjct: 416 GHYV---------------VLIENDINTRPFSTQVLACLPPLPWTLSPEDLANPNRQDLR 460 Query: 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVY 324 + + ++D D IADV+ +V P TPLD EA RGTSVY Sbjct: 461 HVRVFSVDPPD-----------------------IADVTNFVHPGTPLDEEASQRGTSVY 497 Query: 325 FPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYT 384 Q I MLP+ L+ +CSL V+RL ++ + ++ ++V+ S A ++Y Sbjct: 498 LVGQRIDMLPKPLTEDVCSLRADVERLAFSVIWEMTPHADIISTRYTKSVIKSCAAMSYV 557 Query: 385 KVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERR- 443 + D PL L L++L K++ R ERG ++ S E KF ++E Sbjct: 558 EAQA----RMDDSRLVDPLTVDLRNLNSLAKIMRHRRCERGALTLASAEVKFEIDSETHD 613 Query: 444 IERIEQTQRNDAHKLIEECMILANISAAR-FVEKAKEPALFRIHDKPSTEAITSFRSVLA 502 I Q +A+++IEE M+ ANIS A ++ +L R H P+ E + + Sbjct: 614 PLDIGIYQIREANQMIEEFMLAANISVAEKILKHFPLCSLLRRHPSPTKEMLEPLLRTAS 673 Query: 503 ELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY------DPENRGHF 556 +GL L + + + D ++++ + R M QA+Y H+ Sbjct: 674 SVGLNLDVSSSKALAESLDN-AKNDDPYFNKLIRILATRCMTQAVYFCSGDLTFSEYYHY 732 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 GLA Y HFTSPIRRY D+ +HR + L + ++ + + Sbjct: 733 GLAASLYTHFTSPIRRYADVIVHRLLAAAL--------EIAKLPPLFQDGPQLTGVADNL 784 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 + R A A+R + + + + + I + GF V + I+G ++++ Sbjct: 785 NYRHRNAQMASRASVELHTLIYFRTRRMDT-EARIVKIKANGFIVFVPKFGIEGPIYLTP 843 Query: 677 LDNDY--YRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 + + D+V QR+ + +Y + V + +E V + L Sbjct: 844 KGDKGGDWVVDEVHQRVTKPGTNVSYAVLQTVMIHMEVVEPQPHRPKLQL 893 >UniRef50_A9T4Z1 Predicted protein n=2 Tax=Eukaryota RepID=A9T4Z1_PHYPA Length = 1068 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 148/695 (21%), Positives = 263/695 (37%), Gaps = 109/695 (15%) Query: 117 TCIHGDQVLAQP------LGADRKGRREARIVRVLVPKTSQ--IVGRYF----------- 157 D+V A L + R A++V ++ + +VG Sbjct: 284 RVGSNDKVSAAISSLLAQLSSCPGKRPTAKVVAIVQKSPRRESLVGFLEMPQQRGGRAAG 343 Query: 158 -----------TEAGVGFVVPDDSRLSFDILIPPDQIMG-----ARMGF------VVVVE 195 G ++P DSR +L+PP+ + + G +V Sbjct: 344 KGLSGDSPQKRRNVGTMLLMPVDSRCP-KMLVPPNGLPANLLKRLKEGDSTVATELVAAR 402 Query: 196 LTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEI-PYIWPQAVEQQVAGLKEEVPE 254 + +V LG + L + P +PQA + ++P Sbjct: 403 VDTWSVDSYLPYATVVRSLGQGGEIEPQLKAILFENNAHPPDFPQASLDCLPKTPWKIPA 462 Query: 255 EAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDR 314 RVDLR + +ID ARD DDA+ EK + G R+ V IADVSY++ P + LD+ Sbjct: 463 SEIKKRVDLRSYRIFSIDPPTARDLDDALSFEKLQNGEIRVGVHIADVSYFITPGSELDK 522 Query: 315 EARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAV 374 EA +R TS+Y +V+PMLP +L LCSLNP VDRL T+S+ G + V Sbjct: 523 EAAHRSTSIYLEQRVLPMLPRLLCEELCSLNPGVDRLAFSVIWTMSASGEILEQWVGRTV 582 Query: 375 MSSHARLTYTKVWHILQGDQDLRE----------------------QYAPLVKHLEELHN 412 ++S A+LTY +++G E ++ +V + LH+ Sbjct: 583 INSCAKLTYEHAQDMIEGVFTDMEGAEARNSLSKSGKPLPQLHGNHSWSEVVSDVLSLHD 642 Query: 413 LYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAAR 472 + K ++R E G + + + F + + D++ ++EE M+LAN++ A+ Sbjct: 643 MAKKRRESRIEGGALKLNNSKITFSLDEDGTPYDSSMYMTRDSNFVVEEFMLLANMTVAK 702 Query: 473 FVE-KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPR-DYAELLESVADRP 530 + E AL R H +P+ + F + +L + R ++ + V+ P Sbjct: 703 IISNAFPESALLRRHPEPNMRKLREFEEFCEKNDFDLDTSSSGALRLSLEKMQDRVSHDP 762 Query: 531 -DAEMLQTMLLRSMKQAIY--------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRA 581 +L + M+ A Y E GH+ LA Y HFTSPIRRYPD+ +HR Sbjct: 763 VLYNILMLFATKPMQLAKYFCTGELKDKEEEWGHYALACPLYTHFTSPIRRYPDVLVHRM 822 Query: 582 IKYLLAKEQGHQGNTTETGGYHYSM-------------------------------EEML 610 + L E+ + ++L Sbjct: 823 LSAALEAEEIIGMPESSLSHSRQYFSSAKSERGVSDTPVAQNALTIAANRHKLPACSDLL 882 Query: 611 QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDG 670 + HC+ + + + + G + + ++ + + + ++ Sbjct: 883 GIAAHCNERKMASRNVKEASDKLYLWAMLKKKGGLLSDSRVLALGPKFMSLYICKIAMER 942 Query: 671 LVHVSSLDNDYYRFDQVGQRLMGE--SSGQTYRLG 703 ++ ++ + + L+ + + +T R G Sbjct: 943 RIYYEEIEGVNAEWFEATGTLVLDISPTKKTPRKG 977 >UniRef50_UPI0000DB782F PREDICTED: similar to CG16940-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI0000DB782F Length = 786 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 129/675 (19%), Positives = 257/675 (38%), Gaps = 60/675 (8%) Query: 63 ERDGQLVFTRRQCYALPERLDLVKGTVIGHR--DGYGFLRVEGRKDDLYLSS-EQMKTCI 119 + ++ + V+G + + Y +L + + DL + Sbjct: 78 ISEKEIDKLLKN--QNTNDAQYVEGYLRINPWCHKYAYLSLSDDQYDLLIVGLRDRNRAF 135 Query: 120 HGDQVLAQPLGADRK------GRREARIVRVLVPKT-SQIVGRYFTEAGVGFVVPDDSRL 172 GD V+A ++ ++ +V + + VG + F P D R+ Sbjct: 136 DGDFVVACINQPEKWQVHQGQKQKTGVVVCIREKIHPRKTVGCFKQRGAFTFFYPRDHRV 195 Query: 173 SFDILIPPDQI------MGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI 226 + I + + + + +V +T + AVGKI +++G+ + Sbjct: 196 PL-VKINRESLQQFAVCPSSYEDTLYLVVITDW-IKPKFAVGKIEKIVGNIGDIRTESNA 253 Query: 227 ALRTHEIP-YIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYC 285 L +++ + + + + + E R D R + TID + A D DD+V C Sbjct: 254 ILLEYDLDVTPYSPDIIKGLPSSDYILTENDLRDREDWRQECIFTIDPDAAVDLDDSVSC 313 Query: 286 EKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLN 345 + + + V I+DV++Y+ +PLD + R T++Y V MLP+ L +CSL+ Sbjct: 314 KILENENYEIGVHISDVTHYMEFLSPLDIQVSKRATTIYMTDNVYHMLPKQLCQ-ICSLS 372 Query: 346 PQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQ------ 399 P D+L ++ + Y+F + ++ S +++Y ++ ++ Sbjct: 373 PGQDKLAFSVIWEITRNAEIVKYRFAKTIIRSCCQMSYYHAQKFIENPKNNWPDDFLSIN 432 Query: 400 ----YAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNA-ERRIERIEQTQRND 454 + L + LHNL + K R + G + + + + ++ D Sbjct: 433 GNFNFNDLSIKVNILHNLAIQMRKKRFQNGALQIDQPKLYVKIDRITGLPISYNIEEQKD 492 Query: 455 AHKLIEECMILANISAARFVEKA-KEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNK 513 +++LIEE M+LAN++ A + E AL R H +PS +T + L G+ L + Sbjct: 493 SNRLIEEFMLLANMTVATQLYTMIPETALLRNHREPSKHILTVTKDTLQRFGIHLDIKSS 552 Query: 514 PEPRDYAELLESVADRPDAE----------MLQTMLLRSMKQAIY-------DPENRGHF 556 E + + E ++ ++ ++M +A Y E H+ Sbjct: 553 ASLHASIRRYEQGLENENNETKITMKYRMMVINSLCSKAMTRATYICSSTVTAEEELRHY 612 Query: 557 GLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHC 616 L + Y HFTSPIRRY D +HR + + +S + + +C Sbjct: 613 ALNVPLYTHFTSPIRRYSDCVVHRLL---------YSTMKNVEMPKEWSKKLCKSIAANC 663 Query: 617 SMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSS 676 ++ + A A ++ + + V G++ +V V L L I V ++ Sbjct: 664 NIKKYSAKMAQERSSELYFTYLIDLKGPIVTMGIVLNVNENFINVILCQLGIKLRVSITQ 723 Query: 677 LDNDYYRFDQVGQRL 691 L+ + Sbjct: 724 LEKLAVIEYSSEYSV 738 >UniRef50_A6F7X7 Exoribonuclease II n=2 Tax=Gammaproteobacteria RepID=A6F7X7_9GAMM Length = 647 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 162/673 (24%), Positives = 276/673 (41%), Gaps = 38/673 (5%) Query: 62 MERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHG 121 M RD L+ +Q + V+GTV G G+GFL + + +++ MK +HG Sbjct: 1 MFRDNPLLSQLKQNMR--QNTPSVEGTVKGTERGFGFLEADDG-ESYFIAPPHMKKIMHG 57 Query: 122 DQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPD 181 D++ A + A ++ K ++ + R V+ D ++ I Sbjct: 58 DRIKAYI--ETNGDKTSAEPDTLVEAKLTRFIARISMTKNKLTVLADSPVINMPIRAKLV 115 Query: 182 QIMGAR--MGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQ 239 + + G VV +L + ++ + + L ++ Sbjct: 116 GLGKQKVNDGDWVVAQLKSHALKDGSFAAEVTGFVATATDPNAPWWVTLARQDL------ 169 Query: 240 AVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAI 299 + V + + V + R+DL D P TID +D DDA+ EK G ++ VAI Sbjct: 170 --AKDVPAMPDSVEFKDDTTRIDLTDKPFFTIDSASTQDMDDALLIEKTAEGNLKVTVAI 227 Query: 300 ADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV 359 AD + Y+ + L++ A R +VY P + IPM+P LS+ +CSL R + C T+ Sbjct: 228 ADPTSYIPADSELNKIAAERAFTVYLPGRNIPMMPRELSDSVCSLVAGEKRPTLCCTYTI 287 Query: 360 SSKGRL-TGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418 G L ++F+ A ++S +L+YT+V + ++ + A L + L+ L + Sbjct: 288 QEDGALAEEFEFFTAWITSQHKLSYTQVSNWIEEVSTEWQPEAQLAEQLQSLATFARHRQ 347 Query: 419 KAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAK 478 + R+ + + + F + + I R A+++IEE M+ ANI+AAR + Sbjct: 348 QWRKNNAIVFPDQPDYSFELDETGNVLAIHVEHRRIANQMIEETMVAANITAARLFRQNG 407 Query: 479 EPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTM 538 + +F H E I +L E G+E + Y EL ++A++ L + Sbjct: 408 DVGVFNTHAGFDPEKIDLVVELLTEHGIECTKEHIQSLPGYVELQRTLAEK-ANPALDSR 466 Query: 539 LLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTE 598 L R +I HF + L YA +TSPIR+Y D+ HR IK L E Sbjct: 467 LRRMQSYSIISASAERHFAMGLDGYATWTSPIRKYGDIINHRLIKATLTNGSAPSATEDE 526 Query: 599 TGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG--NVFKGVISSVTG 656 S R+ A RD++ WL D++ V F+ I V Sbjct: 527 VI--------------LMSERRRQHRMAERDISSWLYVDYLTPAVESKQAFEASIMDVNR 572 Query: 657 FGFFVRLDDLFIDGLVHVSSLDNDYYR---FDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713 G VRL + + S L ++ + GQ + Y LGD + V + + Sbjct: 573 GGLRVRLLENGAVAFIPASLLHDNKKEVKCLVETGQ--ISIKDQVEYSLGDVIYVNIAEI 630 Query: 714 NMDERKIDFSLIS 726 N ++R I + Sbjct: 631 NKEKRNIVAKPVE 643 >UniRef50_C5EYT8 Ribonuclease n=2 Tax=Helicobacter RepID=C5EYT8_9HELI Length = 716 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 184/725 (25%), Positives = 329/725 (45%), Gaps = 46/725 (6%) Query: 54 GLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRV-EGRKDDLYLSS 112 ++ L + L ++ Y L E+ G V + GYGF+R + D + Sbjct: 21 AFQKYLELLAHLNVL-KIKKNKYYLLEK--FRIGKVELTKAGYGFVRAFDNTGKDWLVEK 77 Query: 113 EQMKTCIHGDQVLAQ-PLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSR 171 +K GD VLA+ + + +A+++ VL K S ++ V + Sbjct: 78 NLLKGAQKGDIVLAKSLIKHQHSAKIKAKVLAVLQEKVSSVICYLEKYKLDCIAVSIPNE 137 Query: 172 LSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTH 231 + + I + ++ + G+I+E+LG + I+L + Sbjct: 138 VVYKINASQKSLKTLPSKTILKI---------NPRNGEILEILGTLEDPKIDEIISLNLY 188 Query: 232 EIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGG 291 + + E Q K EV + R++L +LP ID A+D DDAV+ +++ Sbjct: 189 DKHESFSLQAEIQAQSFK-EVKIKDFKERINLTNLPFCAIDPVSAKDHDDAVFYDEESS- 246 Query: 292 GWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL 351 L+VAIADVS+YV P++PLD EA++RG S+YFP + IPMLP +LS LCSL RL Sbjct: 247 --ILYVAIADVSHYVTPNSPLDIEAKSRGFSIYFPHKSIPMLPRILSENLCSLQEGKTRL 304 Query: 352 CMVCEMTVSSKGR-LTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEEL 410 MV ++ + + + + + + AV+ +LTY +V IL Q + PL L L Sbjct: 305 AMVWKIRLHKRTKAVLSSELFAAVIKVRQKLTYDEVD-ILFETQKSKTIKKPLHSMLFAL 363 Query: 411 HNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISA 470 L + L K R ++G F +E + + ++ + ++ +H+LIEECM+LANI + Sbjct: 364 QELTQKLRKKRLQKG-FDFLGDEVELELDKNLELKSLHFQPQSSSHQLIEECMLLANIQS 422 Query: 471 ARFVEKAKEP-------ALFRIHDKPSTEAITSFRSVLAELGL----ELPGGNKPEPRDY 519 A+ +E+ ++R+H KP E ++ L LG+ +P + + Sbjct: 423 AKLLEQKNSKNDENLKLGIYRVHQKPKQEKLSELFGELRMLGIWRGKAIPKTQESLHKAI 482 Query: 520 AELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLH 579 E+ + + ++++SM+QA Y N GHFGL ++Y+HFTSPIRRY DL LH Sbjct: 483 IEIQNNAKKAKMQREVDKLIIKSMQQANYASHNLGHFGLGFEAYSHFTSPIRRYSDLILH 542 Query: 580 RAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFM 639 R +K + ++ E + L + + ER + D D ++ Sbjct: 543 RILKSKITLQEDID-----------YKESLPMLCDNLNTQEREIMQIEWDFQDRKFARYL 591 Query: 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQT 699 +G ++G+I + + L D + G V L+ ++ + +++ + T Sbjct: 592 SKHLGQTYQGIIIN-ESHPILISLTDYPLMG-ARVVGLNGSGVKYQKALVQIIEVNLATT 649 Query: 700 YRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKT-AREKAKKGDAGKKGGKRRQVG 758 G V+V E + I +++ ++ + K A+E+A++ + K K+++ Sbjct: 650 KVYGMVVKVYNEGFDSKNEAISQYIVAKKQNQAKIKKQRAKEEARRIASRAKRHKKQKFH 709 Query: 759 KKVNF 763 K+ Sbjct: 710 KRRKR 714 >UniRef50_D1NB86 Exoribonuclease II n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NB86_9BACT Length = 645 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 156/662 (23%), Positives = 275/662 (41%), Gaps = 46/662 (6%) Query: 83 DLVKGTVIGHRDGYGFLRVEGRK-----DDLYLSSEQMKTCIHGDQVLAQPLGADRK--- 134 D V+G + G+GF+ + + DD+++ + + + GD+V L Sbjct: 11 DTVEGKLTVTPTGFGFVALPADEAGRHPDDIFIPPQFVGEAMDGDEVKVAILPPREDVPG 70 Query: 135 --GRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVV 192 +IV VL + VG G + P + R+ DI I GA+ G V Sbjct: 71 DSRGPAGKIVAVLKRAREEFVGELQE---GGRIKPLNRRMPDDIEI-TGSRRGAKPGDWV 126 Query: 193 VVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEV 252 V+L + G I + +G +D + ++ + +A ++ + Sbjct: 127 KVKLL--GSEGGSWQGAITDAMGKAGEIAADLDAVMAEFDLCPRYSEADNEEALKIVPRE 184 Query: 253 PEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGG-WRLWVAIADVSYYVRPSTP 311 E R D VT+D DA+DFDDA+ + V I+DV+ ++ P + Sbjct: 185 IE-----REDCTKQLTVTLDPIDAKDFDDALSIMPGEKRTEVIVGVHISDVAAFIAPKSK 239 Query: 312 LDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTV-SSKGRLTGYKF 370 D+EA R S Y P + +PMLP L+ + SL +TV S G++ ++ Sbjct: 240 FDKEAEKRSFSCYLPGRTLPMLPAALTARI-SLQAGQVSNAHTVFLTVERSSGKILSFRR 298 Query: 371 YEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGG-ISF 429 + RL Y +V + + L L++L + + + R++ I Sbjct: 299 AHTKIKVDHRLNYEEVQEFIDHGTAPADWSKNLQSKLKQLVEITRKMQAYRKKTEDFIDL 358 Query: 430 ESEEAKFIFNAE-RRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDK 488 E + + + + RI + ++ ++EECM+ AN + + + L+R+H + Sbjct: 359 ALPEVRILCDEKTNRIVGLVSKVPRESENVVEECMLAANSAVGTQLGEISVAGLYRVHPE 418 Query: 489 PSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIY 548 P E I F + + E+ + G+ + L+S+ D P ++ + LLRS+ +A Y Sbjct: 419 PEAEKIEEFTANMQEM-FGITPGDLSSRKACNAFLKSLPDDPKRPIILSQLLRSLPRAYY 477 Query: 549 DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEE 608 + HFGL Y HFTSPIRRYPDL +H+ + +TG S Sbjct: 478 LEKPALHFGLGKGRYCHFTSPIRRYPDLIVHQQL------------WNYDTGARTRSTAT 525 Query: 609 MLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGN----VFKGVISSVTGFGFFVRLD 664 + ++ CS E D A D LK F+ +++ F GVI+ VT G + + Sbjct: 526 LAKVALDCSTKEENNDNAYFAANDRLKLRFLQEKLEAGGDLTFDGVIAKVTPAGLQLDVS 585 Query: 665 DLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSL 724 +L I G + L Y+ + +R E+ ++ G + VR+ +++ F Sbjct: 586 ELGIYGFIPNEQLKGSSYKNEHARRR---EAESAEWKPGKTMRVRLASIDFVRGSAVFVP 642 Query: 725 IS 726 Sbjct: 643 AG 644 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.143 0.379 Lambda K H 0.267 0.0441 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,481,850,675 Number of Sequences: 3077464 Number of extensions: 193238461 Number of successful extensions: 731285 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1918 Number of HSP's successfully gapped in prelim test: 1176 Number of HSP's that attempted gapping in prelim test: 713674 Number of HSP's gapped (non-prelim): 8207 length of query: 813 length of database: 1,040,396,356 effective HSP length: 137 effective length of query: 676 effective length of database: 618,783,788 effective search space: 418297840688 effective search space used: 418297840688 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 98 (42.3 bits)