HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/587bb26ed7f880e0/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/587bb26ed7f880e0/query.hhm DATE Mon Jan 9 21:59:34 2012 LENG 113 match states, 113 columns in multiple alignment FILT 15 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4243 0.5898 SEQ >ss_pred CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH HHHHHHCCCCCCC >ss_conf 9643200233203457749999999999999744831378763279999999980999999999999986577448832110014821107899987764 2025422564239 >Consensus mktlxxxxxrxxxxxxsxVxxwQxllxxLLxxHYGltLNDTxxxdexvVxxxiexGItpxxAVNxLvxKYxLxRxDxxgfsxxxxsPxlnxxDxlrArxa xglxxxxxnxxxx >batch____ MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFCNEAVIKEHIDAGITLADAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQA TGLLRQSRNNVVR >UniRef50_A1JPX9(8-94:95) Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A1JPX9_YERE8 E=3e-10 s/c=0.76 id=42% cov=63% ---------------------WQLTASALFNKHFGLTLNDTDFCEETCVVALYETGKRPFEAINGLVDKYNLARLNNNAF--QPRSPYLNAID------- ------------- >UniRef50_UPI000190A9E4(64-137:202) hypothetical protein Salmoneentericaenterica_21035 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190A9E4 E=2e-07 s/c=0.77 id=32% cov=63% --------LKERRPSMTTVEMWQKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQP---------------------- ------------- >UniRef50_C4SWK2(7-71:76) Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SWK2_YERIN E=4e-05 s/c=0.76 id=41% cov=50% ---------------------WQRVLNKLLHKHYGIDINDTAFSEINYARHYWDDCIRPYQAVNEWASKYDLCRLD------------------------ ------------- >UniRef50_B4EXF2(5-86:99) Putative uncharacterized protein n=2 Tax=Proteus mirabilis RepID=B4EXF2_PROMH E=1e-20 s/c=1.22 id=36% cov=67% ---------------------FQLLVHQLLQVHYGITLSDTGLSDDAEVSRMIELGISPVSVVNRLVDKYHLDKLNASCY--LPASPYVSDSDALLAQ-- ------------- >UniRef50_C4T7A2(6-82:106) Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T7A2_YERIN E=2e-20 s/c=1.30 id=41% cov=62% ------------------VREYQTIAAYLLEKHFGLTLNDTNLHDDTVVQELVELNVPVFEAINQLVEKYHLDRIDQN--DWSPRSPLL----------- ------------- >UniRef50_D0KGY4(273-349:653) Putative uncharacterized protein n=2 Tax=Pectobacterium RepID=D0KGY4_PECWW E=1e-19 s/c=1.26 id=31% cov=69% ------------------VQHWQRQAEHLLTTHYGQQLDDTTLVCDSVVHQHLRYNISPGNAVNALARIYDWPRCDMPTALF---TPELNSVADALAR-- ------------- >UniRef50_P64525(1-124:124) Uncharacterized protein yeeV n=41 Tax=Enterobacteriaceae RepID=YEEV_ECOL6 E=1e-47 s/c=1.44 id=58% cov=101% MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRA TGLMTRDNyrtvNNITL >UniRef50_A7FEQ6(4-100:118) Putative uncharacterized protein n=8 Tax=Yersinia RepID=A7FEQ6_YERP3 E=9e-36 s/c=1.46 id=54% cov=86% ---------RATAQGALPVPViYQQLLAFLLEHHYGLSLNDTPYHDEQVIAQQIEQGISVGDTINALVDKYALVRIGRNGFSALVQDPMLSKGDIARARQ AAGLWR-------- >UniRef50_C4SB06(1-103:111) Putative uncharacterized protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SB06_YERMO E=2e-38 s/c=1.47 id=48% cov=92% MKTLDKIP-RITPSANQARTEYQQLLTWLLAHCYGLELNDTPYHDEEAIAQQIEHGVTVRETVNELVEKFDLVRIDRSGFSLMAQDPTLNGGDLLRARSA LGLR--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1884 0 0 K 2 * * * * * * * * 388 * * 2085 * * * * * * * * 2 0 * * * * * * 1884 0 0 T 3 * * * * * * * 2711 * * * * * * * * 239 * * * 3 0 * * * * * * 1884 0 0 L 4 * * * * * * * 2711 * 239 * * * * * * * * * * 4 0 * * * * * * 1884 0 0 P 5 * * 2106 * * * * * * * * * 628 * * 3050 * * * * 5 0 * * * * * * 1884 0 0 A 6 1315 * 2100 * * * * * 2106 * * * * * * * * 2916 * * 6 0 * * * * * * 1884 0 0 I 7 * * * * * * * 1480 * 2916 * * * * * * 974 * * * 7 0 * * * * * * 1884 0 0 T 8 * * * * * * 2100 3022 * * * * 1455 * * * 1843 * * * 8 381 * 2106 * * * * 1884 0 0 Q 9 * * * * * 3080 * * * 1247 * * * 3006 * 3132 * 2173 * * 9 0 * * * * 0 * 1964 0 1000 R 10 * * * * * * * * 2171 * * * * 2644 694 * * * * * 10 0 * * * * * * 2325 0 0 A 11 1127 * * 1405 * * * 2604 * * * * * * * * * * * * 11 0 * * * * * * 2325 0 0 V 12 2092 * * * * * * * * * * * * * 2171 * 1421 2556 * * 12 0 * * * * * * 2325 0 0 K 13 3090 * * * * * * * 2580 * * * 2604 * 2171 2075 3450 * * * 13 0 * * * * * * 2325 0 0 P 14 * * * * * * * * * * * * 1361 3090 2683 1567 * * * * 14 0 * * * * * * 2325 0 0 C 15 2604 1631 * * * 3090 * * * * * * * * 3615 2171 * * * 3450 15 0 * * * * * * 2325 0 0 L 16 3093 * * * * * * * * 1992 2596 2718 1671 * * * * * * * 16 0 * * * * * * 2332 0 0 S 17 * * * * * * * * * 3093 * * * 2718 * 823 2596 * * * 17 0 * * * * * * 2332 0 0 P 18 2718 * * * * * * * * * * * 856 2941 * * 2596 * * * 18 0 * * * * * * 2332 0 0 V 19 * * * * * * * * * * * * * * 3102 * * 179 * * 19 0 * * * * * * 2470 0 0 A 20 2933 * * 1882 * * * * * * * * 3514 2980 3120 * 2341 3814 * * 20 0 * * * * * * 2470 0 0 V 21 * * * 2111 * * 2980 2860 * 3275 3171 * * * * * * 1788 * * 21 132 3514 * 0 * * * 2470 1000 0 W 22 * * * * 3325 * * * * * * * * * * * * * 538 2242 22 0 * * * * * * 2943 0 0 Q 23 * * * * * * * * * * * * * 0 * * * * * * 23 0 * * * * * * 2943 0 0 M 24 * * * * * * * 3479 3559 2365 3582 * * 2199 2310 * 2962 * * * 24 0 * * * * * * 2943 0 0 L 25 * * * * * * * 3812 * 1088 2622 * * 3477 * * 3406 3159 * * 25 0 * * * * * * 2943 0 0 L 26 1259 * * * * * * * * 1052 * * * * * * * 3325 * * 26 0 * * * * * * 2943 0 0 T 27 1948 * * 3477 * * 3325 5806 * * * 3159 * * * 2190 2305 * * * 27 0 * * * * * * 2943 0 0 R 28 3406 * * * 4047 * 3477 * 3159 3559 * * * 3325 2118 * * 3687 3650 3812 28 0 * * * * * * 2943 0 0 L 29 * * * * * * * 3559 * 128 * * * * * * * * * * 29 0 * * * * * * 2943 0 0 L 30 * * * * 3406 * * * * 143 * * * * * * * * * * 30 0 * * * * * * 2943 0 0 E 31 3650 * 3365 1515 * * 3159 * * * * 3406 * 3325 * 3687 3477 * * * 31 0 * * * * * * 2943 0 0 Q 32 * * * 3687 * * 2835 * 1850 * * * * 2118 * * 2518 3325 * * 32 0 * * * * * * 2943 0 0 H 33 * 3650 * * * * 120 * * * * * * * * * * * * * 33 0 * * * * * * 2943 0 0 Y 34 * * * * 2595 * * * * * * * * * * * * * * 261 34 0 * * * * * * 2943 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 0 * * * * * * 2943 0 0 L 36 * * * * 3559 * * 2240 * 704 * * * 3477 * * * * * * 36 0 * * * * * * 2943 0 0 T 37 * * 3159 3650 * * * * * * * 4328 3687 3477 * 2783 1165 * * * 37 0 * * * * * * 2943 0 0 I 38 * * * * * * * 2675 * 246 * * * * * * * * * * 38 0 * * * * * * 2943 0 0 N 39 * * 2518 * * * * * * * * 463 * * * 3325 * * * * 39 0 * * * * * * 2943 0 0 D 40 * * 0 * * * * * * * * * * * * * * * * * 40 0 * * * * * * 2943 0 0 T 41 * * * * * * * * * * * * * * * * 0 * * * 41 0 * * * * * * 2943 0 0 P 42 3159 * 3406 * * 3325 * * * * 3687 3812 1433 * * * 2518 * * * 42 0 * * * * * * 2943 0 0 F 43 * * * * 1196 * * * * 1240 * * * * * * * * * 2835 43 0 * * * * * * 2943 0 0 C 44 3365 2846 * 3687 * 3559 2242 * * * * 4328 * * * 1997 * 3477 * * 44 0 * * * * * * 2943 0 0 N 45 * 2513 1172 2284 * * * * * * * 3342 * * * * * * * 3698 45 0 * * * * * * 2980 0 0 E 46 * * 1548 1105 * * * 3195 * * * * * * 3576 * * * * * 46 0 * * * * * * 2980 0 0 A 47 2747 * * 2668 * * * * 4272 * * 3195 * 4030 3582 2513 2232 * * * 47 0 * * * * * * 2980 0 0 V 48 3639 3380 * 3293 * * * * * * * * * * * * * 707 * 3195 48 0 * * * * * * 2980 0 0 I 49 3195 * * * * * * 1439 * * * * * * * * * 938 * * 49 0 * * * * * * 2980 0 0 K 50 2821 * * 2579 * * 3453 * 3442 * * * * 2318 3195 3293 * 3380 * * 50 0 * * * * * * 2980 0 0 E 51 3380 * * 2215 * * 3195 * * * * * * 1661 1927 * * * * * 51 0 * * * * * * 2980 0 0 H 52 * * * * * * 1225 * * 2576 3293 * * 2821 4272 * * * * 3195 52 0 * * * * * * 2980 0 0 I 53 * * * * * * * 663 * 3453 * * * * * * * 3803 3195 3380 53 0 * * * * * * 2980 0 0 D 54 * * 1599 789 * * * * * * * * * * 3453 * * * * * 54 0 * * * * * * 2980 0 0 A 55 2137 3576 3195 3698 * * 3639 * * 2525 * * * 4030 * * 3380 * * 3453 55 0 * * * * * * 2980 0 0 G 56 * 3195 * * * 458 * * * * * 2617 * * * * * * * * 56 0 * * * * * * 2980 0 0 I 57 * * * * * * * 411 3380 * * * * * * * * 2719 * * 57 0 * * * * * * 2980 0 0 T 58 * * * * * * * * * * * * 3803 * 2284 1564 1377 * * * 58 0 * * * * * * 2980 0 0 L 59 * * * * * * * * * 2137 * * 838 * * * * 2230 * * 59 0 * * * * * * 2980 0 0 A 60 3442 3582 * * 2576 2713 * * * 2636 * * * * 3639 * * 2701 * 3195 60 0 * * * * * * 2980 0 0 D 61 * * 1793 2012 * * * * * * 2636 3453 * 3195 * 3293 * * * * 61 0 * * * * * * 2980 0 0 A 62 403 * * * * * * * * * * * * * * * 2821 3293 * * 62 0 * * * * * * 2980 0 0 V 63 * * * * * * * 1677 * * * * * * * * * 541 * * 63 0 * * * * * * 2980 0 0 N 64 * * * * * * * * * * * 116 * * * 3698 * * * * 64 0 * * * * * * 2980 0 0 F 65 1674 * * 2400 2137 3380 * * * * * * * 3803 3293 * * * * * 65 0 * * * * * * 2980 0 0 L 66 * * * * * * * * * 167 * * * * * * * * 3195 * 66 0 * * * * * * 2980 0 0 V 67 1468 * * * * * * * * * * * * * * * * 647 * * 67 0 * * * * * * 2980 0 0 E 68 * * 1947 1399 * * * * * * * * * * 1987 3195 * * * * 68 0 * * * * * * 2980 0 0 K 69 * * * * * * * 1987 419 * * * * * * * * * * * 69 0 * * * * * * 2980 0 0 Y 70 * * * * 3639 * * * * * * * * * * * * * * 121 70 0 * * * * * * 2980 0 0 E 71 2789 * 1832 2798 * * 1996 * * * * 3380 * 3576 * * * * * * 71 0 * * * * * * 2980 0 0 L 72 * * * * * * * * * 419 * * * * * * * * 1987 * 72 0 * * * * * * 2980 0 0 V 73 3380 3195 2525 2636 * * * 4272 * * * * 3453 * * * * 1657 * * 73 0 * * * * * * 2980 0 0 R 74 * * * * * * * * 3293 * * * * * 155 * * * * * 74 0 * * * * * * 2980 0 0 I 75 * 3453 * * * * * 1486 * 1702 * * * * 3698 * 3582 * * 3576 75 0 * * * * * * 2980 0 0 D 76 * * 433 * * 4030 * * * * * 2336 * * * * * * * * 76 0 * * * * * * 2980 0 0 R 77 3137 * * * * * 4302 * * * 3266 3178 * 1512 1887 * * * * * 77 0 * * * * * * 2777 0 0 K 78 * * * * * * * * 3124 * * 1957 1417 * 4302 2304 * * * * 78 148 * 3359 * * * * 2777 0 0 G 79 3018 2735 * * * 848 * * * * * * * * * * 2550 * * * 79 0 * * * * * 0 2566 0 1000 F 80 2550 * * * 558 * * * * * * * * * * * * * * 2735 80 461 * 1870 * * 0 * 2566 0 1000 S 81 * * 2822 * * * * * * 2333 * * * * * 599 * * * * 81 0 * * * * * 0 2309 0 1531 W 82 1869 * * * 2333 * * * * 2894 * * * * * * * * 1347 * 82 319 * 2333 * * 0 * 2309 0 1531 Q 83 * 2756 * * * * * * * 1965 3089 * * 1440 * 3189 * * * * 83 0 * * * * * 0 2374 0 1000 E 84 3089 * * 2622 * * * * * * * * 1323 3753 * * 2756 3351 * * 84 0 * * * * * 0 2374 0 1000 Q 85 2660 * * * * * * * * * * * * 1145 1360 * * * * * 85 0 * * * * 0 * 2374 0 1000 S 86 * * 2428 * * * * * * * * * * * * 764 2149 * * * 86 0 * * * * * * 2674 0 0 P 87 * * * * * * * * * * * * 190 3015 * * * * * * 87 0 * * * * * * 2674 0 0 Y 88 * * * 2681 * * * * * 2234 3589 * * * * * 3284 * * 1166 88 0 * * * * * * 2674 0 0 L 89 * * * * * * * 2422 * 557 * * * * * * * 2902 * * 89 0 * * * * * * 2674 0 0 R 90 * * * * * * * * * * * 886 * * 2754 1687 * * * * 90 0 * * * * * * 2566 0 0 A 91 1880 * 2735 * * 3163 * * 3437 * * * * * * 1708 * 3878 * * 91 0 * * * * * * 2566 0 0 A 92 3813 * * * * 2294 * 1950 * * * * * * * 2735 * 1662 * * 92 0 * * * * * * 2566 0 0 D 93 2550 * 270 * * * * * * * * * * * * * * * * * 93 0 * * * * * * 2566 0 0 I 94 2525 * 2387 * * * * 1246 * 2988 * * * * * * * 3514 * * 94 0 * * * * * * 2406 0 0 L 95 1748 * * * * * * * * 510 * * * * * * * * * * 95 0 * * * * * * 2406 0 0 R 96 * * * * * * * * * 1454 * * * * 655 * * * * * 96 0 * * * * * * 2406 0 0 A 97 0 * * * * * * * * * * * * * * * * * * * 97 0 * * * * * * 2406 0 0 R 98 * * * * * * * * * * * * * 2525 275 * * * * * 98 0 * * * * * * 2406 0 0 Q 99 * * * * * * * * * * * * * 1221 1415 2350 * * * * 99 0 * * * * * * 1852 0 0 A 100 193 * * * * * * * * * * * * * * 2999 * * * * 100 0 * * * * * * 1852 0 0 T 101 2547 * * * * * * * * 2350 * * * * * * 660 * * * 101 0 * * * * * * 1852 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * * * * * 1852 0 0 L 103 * * * * * * * * * 0 * * * * * * * * * * 103 0 * * * * * * 1852 0 0 L 104 * * * * * * * * * 2014 2001 * * * 1593 * * * 2547 * 104 0 * * * * * * 1852 0 0 R 105 * * * * * * * 2585 2721 * * * * * 1409 * 1713 * * * 105 0 * * * * * * 1679 0 0 Q 106 * * * * * * * * * * * * * 929 1074 * * * * * 106 0 * * * * * * 1519 0 0 S 107 * 1878 1074 * * * * * * * * * * * * 1983 * * * * 107 0 * * * * * * 1519 0 0 R 108 * * * * * * * * 1878 * * 1074 * * 1983 * * * * * 108 929 1074 * 2000 415 * * 1519 1083 0 N 109 * * * * * * * * * * * 0 * * * * * * * * 109 0 * * * * * * 1519 0 0 N 110 * * * * * * * * * * * 458 * * * * 1878 * * * 110 0 * * * * * * 1519 0 0 V 111 * * * * * * * 1074 * * * 1878 * * * * * 1983 * * 111 0 * * * * * * 1519 0 0 V 112 * * * * * * * * * * * * * * 1878 * 1074 1983 * * 112 0 * * * * * * 1519 0 0 R 113 * * * * * * * 1878 * 2079 * * * 2070 1983 * * * * * 113 0 * * 0 * * * 1519 0 0 //