BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (567 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 1178 0.0 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 503 e-141 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 489 e-136 UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 481 e-134 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 481 e-134 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 473 e-131 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 465 e-129 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 457 e-127 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 455 e-126 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 455 e-126 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 450 e-125 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 446 e-123 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 444 e-123 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 441 e-122 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 436 e-120 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 426 e-118 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 399 e-109 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 395 e-108 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 370 e-101 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 345 2e-93 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 337 6e-91 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 332 3e-89 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 316 2e-84 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 314 6e-84 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 312 3e-83 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 291 5e-77 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 284 8e-75 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 282 3e-74 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 265 4e-69 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 258 6e-67 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 253 2e-65 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 251 5e-65 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 236 2e-60 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 234 6e-60 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 234 9e-60 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 231 6e-59 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 218 4e-55 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 209 3e-52 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 206 1e-51 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 206 3e-51 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 206 3e-51 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 204 8e-51 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 197 1e-48 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 196 3e-48 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 190 1e-46 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 189 2e-46 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 186 2e-45 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 181 6e-44 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 181 9e-44 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 179 2e-43 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 176 2e-42 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 175 4e-42 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 172 3e-41 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 169 2e-40 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 162 3e-38 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 146 2e-33 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 145 4e-33 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 144 1e-32 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 141 7e-32 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 137 1e-30 UniRef50_UPI0001913BF4 hydrogenase 2 large subunit n=1 Tax=Salmo... 130 1e-28 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 127 9e-28 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 127 1e-27 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 126 2e-27 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 125 4e-27 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 117 9e-25 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 116 3e-24 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 113 2e-23 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 106 3e-21 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 103 2e-20 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 98 9e-19 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 92 8e-17 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 91 1e-16 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 89 3e-16 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 89 4e-16 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 87 1e-15 UniRef50_UPI0001913F01 hydrogenase 2 large subunit n=1 Tax=Salmo... 85 8e-15 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 83 3e-14 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 82 5e-14 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 82 5e-14 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 81 1e-13 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 80 3e-13 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 79 3e-13 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 79 3e-13 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 78 1e-12 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 76 3e-12 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 76 4e-12 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 74 2e-11 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 73 2e-11 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 73 3e-11 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 72 4e-11 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 72 5e-11 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 72 5e-11 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 72 6e-11 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 71 1e-10 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 70 2e-10 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 70 3e-10 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 70 3e-10 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 69 5e-10 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 68 8e-10 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 67 1e-09 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 67 2e-09 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 65 5e-09 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 65 9e-09 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 64 1e-08 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 64 1e-08 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 64 1e-08 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 64 1e-08 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 64 2e-08 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 62 5e-08 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 62 6e-08 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 62 6e-08 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 62 7e-08 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 62 8e-08 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 62 8e-08 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 61 9e-08 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 61 9e-08 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 61 1e-07 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 61 1e-07 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 61 1e-07 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 60 2e-07 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 60 2e-07 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 60 2e-07 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 60 2e-07 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 60 2e-07 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 60 3e-07 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 60 3e-07 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 60 3e-07 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 59 4e-07 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 59 5e-07 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 58 7e-07 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 57 2e-06 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 57 2e-06 UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 57 2e-06 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 56 3e-06 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 56 3e-06 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 56 3e-06 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 56 4e-06 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 56 5e-06 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 55 5e-06 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 55 5e-06 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 55 6e-06 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 55 6e-06 UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit... 55 8e-06 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 55 8e-06 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 55 9e-06 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 54 1e-05 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 54 1e-05 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 54 2e-05 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 54 2e-05 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 54 2e-05 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 54 2e-05 UniRef50_P40597 Hydrogenase expression/formation protein hoxV n=... 52 6e-05 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 52 7e-05 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 52 8e-05 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 52 8e-05 UniRef50_Q2RV77 Putative hydrogenase expression/formation protei... 52 8e-05 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 52 9e-05 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 52 9e-05 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 51 1e-04 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 51 1e-04 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 51 1e-04 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 50 2e-04 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 50 2e-04 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 50 2e-04 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 50 3e-04 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 50 3e-04 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 50 3e-04 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 49 4e-04 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 49 4e-04 UniRef50_P28153 Hydrogenase expression/formation protein hupK n=... 49 5e-04 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 49 7e-04 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 49 7e-04 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 48 9e-04 UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit... 47 0.002 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 47 0.002 UniRef50_Q21QY7 Putative hydrogenase expression/formation protei... 47 0.002 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 47 0.002 UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodops... 47 0.003 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 46 0.003 UniRef50_Q2BN45 Putative hydrogenase expression/formation protei... 46 0.003 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 46 0.004 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 46 0.005 UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83W... 45 0.007 UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methan... 44 0.012 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 44 0.013 UniRef50_UPI0001874346 putative reducing hydrogenase alpha subun... 44 0.014 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 44 0.020 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 43 0.029 UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 ... 43 0.031 UniRef50_Q0A725 Putative uncharacterized protein n=1 Tax=Alkalil... 43 0.040 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/567 (100%), Positives = 567/567 (100%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI Sbjct: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT Sbjct: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP Sbjct: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP Sbjct: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG Sbjct: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS Sbjct: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG Sbjct: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI Sbjct: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 Query: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 HSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 264/576 (45%), Positives = 354/576 (61%), Gaps = 29/576 (5%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 R+ IDPVTRIEGHLRI+ E+E V A++SGTM RG+E I+K RDPR+AW QRICGV Sbjct: 3 RLVIDPVTRIEGHLRIEAELEGNRVKSAYSSGTMVRGIEIILKGRDPREAWAFAQRICGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 CTT HA +S+RA E AL I VP NA IR +++ HDH+VHFY L ALDWV+ AL Sbjct: 63 CTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPIQAL 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 +ADP K SE+ + +S + +SP F +VQ+KI+ V QLGIF+ GYW HP +LPPE Sbjct: 123 KADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLPPEA 182 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 NL+AVAHYL AL Q +V + GGK PH N VGG+A PI+L +N+++L I Sbjct: 183 NLMAVAHYLDALNWQTKIVQVHTIFGGKNPH-PNFVVGGMACPIDLQSDTAINMDKLGRI 241 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS-KNGSFLFPGG 302 KS ID + +FVE+VY D IA+FY +W +G+G N+L + E DS + G F P Sbjct: 242 KSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVLGEPEGDSHREGKFFIPPT 301 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI-------P 351 +I + +L +Y + I+E HS+YK DE P+EG T+ P Sbjct: 302 FIRDRNLENYEDVD-------YSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYTGPEP 354 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 Y + +GKYSW+K+P + G EVGPLA +L A ++ E+V Y G Sbjct: 355 PYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYA----RDEHGARELVNSYLSKLG- 409 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPN-IPATGE-- 468 L V L+ST+GR + R + +++ Y L+ N+ GD TTF P+T E Sbjct: 410 -LPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTWEKD 468 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 KG+G +EAPRG LSHW+ IKDG I+NYQAVVP+TWN PR+ PYE SLVG + Sbjct: 469 AKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGHELV 528 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 +P +PLE++RTIHSFDPC+ACAVH+ + ++ + Sbjct: 529 NPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/631 (42%), Positives = 364/631 (57%), Gaps = 79/631 (12%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + R+ +DP+TRIEGHLRI+ E++ + +A++SGT RG+E I++ RDPRDAW QRIC Sbjct: 7 NNRLVVDPITRIEGHLRIEAEMDGNTIKQAFSSGTSVRGIELILQGRDPRDAWAFAQRIC 66 Query: 62 GVCTTTHALSSVRAAESALN---------------------------------------- 81 GVCT H ++SVRA E A+ Sbjct: 67 GVCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSI 126 Query: 82 -------IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEML 134 + +P NAQ IRNI++A HDH++HFY L ALDWVD+ SAL ADPT+ + + Sbjct: 127 GVLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLA 186 Query: 135 KGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQA 194 +S + +SP F V+ K+K LV SGQLGIF+N YWGHP KLPPEVNL+A+AHYL A Sbjct: 187 GQLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDA 246 Query: 195 LECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFV 254 L QR+ +V + GGK PH N VGGV +PINL+ +N RL+ ++ I ++ FV Sbjct: 247 LTWQREVVKVHTIFGGKNPH-PNFVVGGVPSPINLNASTGINTSRLVQLQDAITQMKSFV 305 Query: 255 EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN--GSFLFPGGYIENADLSSY 312 +QVY D IA +Y EW TRG+G N+L+ + P S + SFLFP G I DLS Sbjct: 306 DQVYYPDIVAIAGYYKEWGTRGEGLGNFLTYGDLPMTSMDDPDSFLFPRGAILGRDLSKV 365 Query: 313 RPITSHSDEYLIKGIQESAKHSWYKDEAPQA----PWEGTTI-------PAYDGWSDDGK 361 + D IQE SWY+ A P+ G T P Y + + Sbjct: 366 HDL----DLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYTGPKPPYKHLNVGAE 421 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+KSP + G +EVGPLA +L+ A + Q+ +N ++I LE + L ST Sbjct: 422 YSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILD------LETSALFST 475 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF----VKP-NIPATGEFKGVGFLE 476 LGR + R V + + LQ+ Y L+ NI KGD TF P N P G+ GVG +E Sbjct: 476 LGRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQ--GVGVME 533 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT-PVADPNKPLE 535 APRG L HW+V+++G I NYQ VVP+TWN+GPR+ N G YE +L + DP++PLE Sbjct: 534 APRGALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLE 593 Query: 536 VVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++RT+HSFDPC+ACAVHV+D G E + +KV Sbjct: 594 ILRTLHSFDPCLACAVHVMDETGEERLRLKV 624 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 253/591 (42%), Positives = 359/591 (60%), Gaps = 38/591 (6%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +R+ +DP+TRIEGH+R + I + V++ A + GTM+RG+E I++ RDPRDAW V+RIC Sbjct: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLPP Sbjct: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLD---GLGVLNLE 238 E NL+ AHYL+AL+ QR+ ++ A+ GGK PH N VGG+ IN+D +G +N+E Sbjct: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPH-PNWIVGGMPCAINIDESGAVGAVNME 255 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDSK 293 RL ++S I + +DF+ V D I F W G G ++Y + P+ D Sbjct: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 Query: 294 NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTTI 350 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 316 EKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 Query: 351 PAYDGWSDDG------------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 P Y+ G +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT---- 427 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 + ++ + ++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 428 --VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATA 485 Query: 459 VKPNI-PAT--GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDV 515 PAT E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ + Sbjct: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust. Identities = 256/594 (43%), Positives = 359/594 (60%), Gaps = 40/594 (6%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +R+ +DPVTRIEGHLR + I ++ V++ A + GT++RG+E I+K RDPRDAW +RIC Sbjct: 17 RRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAFTERIC 76 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT THAL+SV A E+AL ID+P NA IRN++ HDH+VH Y L+ LDWVD+ S Sbjct: 77 GVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHLYHLTGLDWVDVVS 136 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A +ADP SE+ + +S W +SP F V++K+ L+ S QLGIF NGYWGHPA KL P Sbjct: 137 ASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLGIFTNGYWGHPAYKLSP 196 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLG---VLNLE 238 E NL+ VAHY++AL+ Q+D + + GGK PH N VGGV +N+DG+G V+N E Sbjct: 197 EANLMVVAHYIEALDFQKDVVHIHTIFGGKNPH-PNWLVGGVPCSLNIDGVGAADVINQE 255 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDSK 293 RL ++ I++ F +QV DT +A FY +WL G G + Y +P+ D Sbjct: 256 RLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLSVLAYGGIPDIANDYT 315 Query: 294 NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTT 349 S L P G I N + + P++ + E IQE+ HSWYK + PWEG T Sbjct: 316 ENSLLMPPGAIINGNFNEVLPVSLTNPEE----IQETVNHSWYKPYPAGKTGLHPWEGIT 371 Query: 350 IPAYD------GWSDDGK-------YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 P Y+ G D K YSW+K+P + G +EVGPLA ML+ A + + Sbjct: 372 EPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLIGYARKNDDIKG 431 Query: 397 KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG--- 453 +++ + + V L STLGRI R++ + ++ Y LITN+ G Sbjct: 432 LVDDFLG-----RAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNLKNGVRA 486 Query: 454 -DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFN 512 +TT KP TGE +GVGF EAPRG L HW+ I+D I +YQ VVP+TWN PR+ + Sbjct: 487 TANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNGAPRSPD 546 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + YE SL+ T +A P +PLE++RT+HSFDPC+AC+ H++ DG ++++V++ Sbjct: 547 GQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 263/607 (43%), Positives = 359/607 (59%), Gaps = 48/607 (7%) Query: 3 QRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +RI +DPVTRIEGH+R + ++ N V+ A ++GTMWRG+E I+K RDPRDAW V+RIC Sbjct: 16 RRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERIC 75 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HAL+SVRA E+AL+I +P NA IR I+ HDH VHFY L ALDWVD+ S Sbjct: 76 GVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVMS 135 Query: 122 ALQADPTKASEMLKGVSTWH-LNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+ADP + SE+ + VS H L+S F +QN++K V SGQLG F NGYWG A LP Sbjct: 136 ALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGPFMNGYWGSKAYVLP 195 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV----LN 236 PE NL+AV HYL+AL+ Q++ ++ + GGK PH N VGGV INLDG+G +N Sbjct: 196 PEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPH-PNYLVGGVPCAINLDGIGAASAPVN 254 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WLTRGK-GAVNYLSVPEFPTDSK 293 +ERL ++K+ ID++ +F + VY D I Y + WL G A N L E+P + Sbjct: 255 MERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAATNVLDYGEYPNVAY 314 Query: 294 NGSF-LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK--DEAPQA-PWEGTT 349 N S PGG I N + P+ + +QE HSWYK DE+ PW+G T Sbjct: 315 NKSTDQLPGGAILNGNWDEVFPVDPRDSQQ----VQEFVSHSWYKYADESVGLHPWDGVT 370 Query: 350 IPAY-------------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGR----- 391 P Y + + KYSW+KSP + G +EVGPL+ ++ A R Sbjct: 371 EPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYILAYAHARSGNKY 430 Query: 392 --------ESTQNKLNEIVAIYQKLTGNTLEVAQ-LHSTLGRIIGRTVHCCELQDILQNQ 442 E + +N + L + Q L ST+GR + R + +++ + Sbjct: 431 AERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQYCGEMMHSD 490 Query: 443 YSALITNIGKGDHTTF-VKPNIPATG--EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAV 499 + L+ NI GD T V PAT + KGVG + APRG L HW+ IKDG I NYQ V Sbjct: 491 WHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRIKDGRIENYQCV 550 Query: 500 VPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGN 559 VP+TWN PR++ +G +E SL+ TP+ +P +P+E++RT+HSFDPC+AC+ HV+ A+G Sbjct: 551 VPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLACSTHVMSAEGQ 610 Query: 560 EVVSVKV 566 E+ +VKV Sbjct: 611 ELTTVKV 617 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 245/566 (43%), Positives = 335/566 (59%), Gaps = 26/566 (4%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 I +DPVTRIEGHLRI+ E+ENG V A++S T++RG+E I+K RDPRDA QR CGVC Sbjct: 25 IVVDPVTRIEGHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVC 84 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 T THAL+S R ++A+ + +P NA YIRN++L A HDHIVHFY L ALD+VD+T+AL+ Sbjct: 85 TYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALK 144 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMKLPPE 182 ADP KA+++ +S + + VQ+K+K V SGQLG F N Y+ GHPA L PE Sbjct: 145 ADPAKAAKVASSISP-RKTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDPE 203 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 NLIA AHYL+AL Q A R +A+ G K PH Q VGGV L +R+ Sbjct: 204 TNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC------YDALTPQRIAE 257 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN-GSFLFPG 301 ++ + FV++VY D V+AA Y +W G G N+++ EFP D + S F Sbjct: 258 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG-GTDNFITFGEFPKDEYDLNSRFFKP 316 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + +P I+E +HSWY+ + PW+G T P Y D + Sbjct: 317 GVVFKRDFKNIKPFDKMQ-------IEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDR 369 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+K+P + G+ +E GPLA +L+ + G + + ++A KL + L ST Sbjct: 370 YSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLA---KL---GVGPEALFST 423 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 LGR R + + + + NI KGD+ +P E GVGF+ APRG Sbjct: 424 LGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAE--GVGFVNAPRGG 481 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 LSHW+ I+DG I N+Q VVPSTW GPR + + P E SL+GTPVAD +P+E++RT+H Sbjct: 482 LSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVH 541 Query: 542 SFDPCMACAVHVVDADGNEVVSVKVL 567 SFDPC+AC VHV+D NEV ++L Sbjct: 542 SFDPCIACGVHVIDGHTNEVHKFRIL 567 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 250/582 (42%), Positives = 345/582 (59%), Gaps = 32/582 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S R+ IDPVTRIEGHLR++ E +GV+ AW S T +RG+E I RDPRD W V+RIC Sbjct: 12 SSRVVIDPVTRIEGHLRVEMEAGDGVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVERIC 71 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT THA++++ A E AL VPV A+ +R+++ A DH++HFYQL A+DWVD+ S Sbjct: 72 GVCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVDVMS 131 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL+ADP + + + K +S W L+S F VQ K+KD +A GQ IF NGYWGHPA KLPP Sbjct: 132 ALKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYKLPP 191 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 EVNL+ VAHYLQAL QRD ++ +LGGK PH N VGG+A IN++ +N L Sbjct: 192 EVNLLGVAHYLQALVWQRDMIKIHTILGGKNPH-PNFLVGGMACAINMNNDQAINQFSLS 250 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV---PEFPTDSKNGSFL 298 Y+K + DF+ +VY D IA FY ++ G N+ E T + G + Sbjct: 251 YLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIGASNPNFFCTGAPSEINTGAPAGKGM 310 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTIPAYD 354 G + N D + P I+E SWY+ +A AP++G T Y+ Sbjct: 311 IKPGVLLNGDYRNVLPFDQDK-------IREFVTSSWYRYTEGRDAGLAPYDGETNADYN 363 Query: 355 G------W-SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQK 407 G W SD +Y+WVK+P + G + VGP A M++ A G + +++ A K Sbjct: 364 GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVD---AACDK 420 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI-PAT 466 L G + A ++STLGR+ GR + D++ +Q + I G+ +TF P T Sbjct: 421 L-GLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKWEPET 479 Query: 467 --GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 KGVG++EAPRG LSHW+ I++G NYQAVVPSTWNS R+ +GPYE SL Sbjct: 480 WPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEYSLAH 539 Query: 525 T---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVS 563 T P+ DP++P+E +RTIHS+DPC +CAVH+ D +G +++ Sbjct: 540 TGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILT 581 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 214/229 (93%), Positives = 223/229 (97%) Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANML KLAAGRESTQ KL Sbjct: 1 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRESTQTKL 60 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 NEI+A+YQKLTG TLE+AQLHSTLGRIIGRTVHCCELQ++LQ+QY+ALI NIGKGD+TTF Sbjct: 61 NEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDYTTF 120 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 VKPNI ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY Sbjct: 121 VKPNIQATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 180 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 EQSLVGTP+ADP KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 181 EQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 229 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 246/578 (42%), Positives = 339/578 (58%), Gaps = 46/578 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 I +DP+TRIEGHLRI E+ENG V AW+S ++RG+E I+K RDPRDA QR CGVC Sbjct: 16 IVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVC 75 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 T HAL+S R + A+ + +P NA+ +RN+++A+ HDH+VHFY L ALDWVD+T+AL+ Sbjct: 76 TYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALK 135 Query: 125 ADPTKASEMLKGVSTWHL-NSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMKLPP 181 ADP KA+++ ++ NS + VQ+K+K V SGQLGIF N Y+ GH A LPP Sbjct: 136 ADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPP 195 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 EV+LIA AHYL+AL Q A +A+LGGK PH Q VGG +N L + L Sbjct: 196 EVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSN------YQGLTKDPLA 249 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN-----GS 296 + ++ FV + Y D +A FY +W G G NYL+ EF TD + + Sbjct: 250 NYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG-GTSNYLAFGEFATDDSSPEKHLAT 308 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP----QAPWEGTTIPA 352 FP G I DL D + I E K+SWY AP + P++G T P Sbjct: 309 SQFPSGVITGRDLGKV-------DNVDLGAIYEDVKYSWY---APGGDGKHPYDGVTDPK 358 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 Y D YSW+K+P + GK +EVGPLA + A G+ + ++ ++ KL + Sbjct: 359 YTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLG---KL---S 412 Query: 413 LEVAQLHSTLGRIIGRTVH----CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 + LHSTLGR R + C ++ ++ + + G D+T K +P E Sbjct: 413 VPATALHSTLGRTAARGIETAIVCANMEKWIKE-----MADSGAKDNTLCAKWEMPE--E 465 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 KGVG +APRG LSHW+ IK I N+Q VVPSTWN GPR D P E++L+GTP+A Sbjct: 466 SKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIA 525 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 DP +P+E++RT+H+FDPC+AC VHV++ + NE++ KV Sbjct: 526 DPKRPVEILRTVHAFDPCIACGVHVIEPETNEILKFKV 563 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 249/596 (41%), Positives = 343/596 (57%), Gaps = 50/596 (8%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + I +DP+TRIEGHLRI+ I EN + AW+S TM+RG+E I+K RDPRD ++ RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH S+ A E A I +P NA+ +RN+I A HDH+VHFY L ALD+VD+ S Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 122 ALQADPTK-ASEMLKGVSTW----HLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 A +A+PT A+E K ++ +F VQ++I V G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 KL PE NLI VAHYL+AL+ QRD ++ A+ GGK PH Q++ VGGV ++ N Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK-----N 275 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAV-----------NYLSV 285 R+ K + + ++F++ Y D + Y + T + +Y+S Sbjct: 276 PARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSYMSY 335 Query: 286 PEFPTDSK---NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-AP 341 +F D N LFP G + + D+S + + I E HSWY+ AP Sbjct: 336 GDFRLDDTGFYNSEMLFPSGLVLDGDISKALDVDPNK-------ITEDVTHSWYEGTGAP 388 Query: 342 QAPWEGTTIPAY-------DGWS---DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGR 391 + P+EGTTIP Y DG+S + KYSW+KSP + GK VEVGPLA M++ G Sbjct: 389 EHPYEGTTIPKYTGLEKKADGYSYLKTEEKYSWIKSPLYDGKKVEVGPLARMVIGYVKG- 447 Query: 392 ESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIG 451 ++ + V + K L V L ST+GR R + + D++ L N Sbjct: 448 ---DKRITKYVGNFLKRA--NLPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAA 502 Query: 452 KGDHTTFVKPNIPATG-EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRN 510 GD +T+ + + + KG+G EAPRG L HW+ +K+G + NYQAVVPSTWN+GPR Sbjct: 503 SGDLSTWTEFDFDKVSVDTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRG 562 Query: 511 FNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++G YE SL+GT VA+P +PLE++RTIHSFDPC+ACAVHVVD G E+ KV Sbjct: 563 PKGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 245/589 (41%), Positives = 348/589 (59%), Gaps = 45/589 (7%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M++RI +DP+TRIEGHLRI+ + EN V+ A+++ T+WRG+E I+K RDPRDA QR Sbjct: 1 MTKRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICGVCT +H + + A E+AL I P+NA+ IR+++ + HDH VHFY L LDW DI Sbjct: 61 ICGVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDI 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNS-PEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 TSAL+ADP AS++ S + + +E T VQ ++ + A G LG FAN YWGH + Sbjct: 121 TSALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYR 180 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 PE NLI ++HYL+ALE QR A +++A+ G K PH Q+L VGGV + ++ L+ Sbjct: 181 FSPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTSVMD-----ALDPS 235 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFY---PEWLTRGKGAVNYLSVPEFPTDSKNG 295 RL + ++DFV + Y D + A + P L G N+ S E P + Sbjct: 236 RLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLG-GCNVKNFYSYQEIPLNKT-- 292 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG 355 +++ G + + D++ I +E LI E A H+WYK+ P++G P Y G Sbjct: 293 EWMYSTGIVMDGDITKVHEI----NEDLI---TEEATHAWYKENKALHPYDGQQDPNYTG 345 Query: 356 WSD------------------DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 + D GKY+W+K+P + GK +EVGPLA ++V LAA + Sbjct: 346 FKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAA----KNPR 401 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 + ++ + K TG L +A L +TLGR R + C D +++LI N+ K D +T Sbjct: 402 IEKVATQFLKDTG--LPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANL-KVDQST 458 Query: 458 FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 + I E+KG PRG+LSHW+ IK+G+I NYQAVVPSTWN+GPR+ N GP Sbjct: 459 YTTYKIDKNKEYKGRYMGTVPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGP 518 Query: 518 YEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 YE SLVG + D ++PLE++R IHSFDPC+ACAVHV+D GNE+ +V Sbjct: 519 YEASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 246/587 (41%), Positives = 346/587 (58%), Gaps = 55/587 (9%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I IDPVTRIEGHLR++ E+ E+ V++AWASG ++RG+E I+K RDPRD +I QRIC Sbjct: 8 QKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTGLIAQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT +H +S+ A E+A +I P NA+ +RN++ A DH+VH+Y L +LD+VD+TS Sbjct: 68 GVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLDYVDVTS 127 Query: 122 ALQADPTKASEMLKGVSTWHLN----SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 AL+AD KASE+ WH + S + VQ K+ + V +G+LG+FANGYWGH Sbjct: 128 ALEADCHKASEI---AHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQY 184 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 KL PE NLI + HYL+AL QR+ ++ +A+ GGKTPH QNL VGGV + +++ LN Sbjct: 185 KLSPEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDM-----LNP 239 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 +RL I +F+++ Y D ++ A Y + + G+G +G+F Sbjct: 240 QRLNDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEG-------------RGHGNF 286 Query: 298 LFPGGYIENADLSSYRPI----------TSHSDEYLIKGIQESAKHSWYKDEAPQAPWEG 347 + GGY LS P+ S D + I E A SWY DEAP P++ Sbjct: 287 MCSGGY----QLSDDEPLFASGIIWGHDFSKIDAFDDTQITEEASRSWYADEAPTRPYDE 342 Query: 348 TTIPAYDGWSDD------GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 TT P Y + D GKYSW+K+P + G+ +EVGP A M++ K + Sbjct: 343 TTEPDYTDMNADGTLKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYV-------KKAKTV 395 Query: 402 VAIYQKLTGNT-LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 Q +T LE+ S +GR R V + D++ S LI NI D TT+ K Sbjct: 396 RPYMQHFMDDTGLELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDETTWTK 455 Query: 461 PNIPATG-EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 + A E KG LE PRGMLSH++ I++ + NYQAVVP+TWN+ P++ GPYE Sbjct: 456 YDFEALPLETKGRAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPYE 515 Query: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +++VG +ADP +PLEV+R +HSFDPC+ACAVHV+DA G + +V Sbjct: 516 EAIVGLKLADPQQPLEVLRAVHSFDPCLACAVHVIDAQGQTLSEHRV 562 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 246/585 (42%), Positives = 334/585 (57%), Gaps = 37/585 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI IDP+TRIEGHLRI+ E E G + AWA T +RG+E+I++ RDPRDAW QRIC Sbjct: 3 TERIVIDPITRIEGHLRIELEAEGGRIGNAWACATQFRGIEKILEGRDPRDAWAFAQRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HA++S+RA E A+ +P +A+ IRN++ T DH++HFY L ALDWVD+ S Sbjct: 63 GVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVDVMS 122 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL ADP S + VS W NS F +VQ ++ A G LGIFA+GYWGHPA +LPP Sbjct: 123 ALAADPAATSRLAASVSPWPNNSVSWFKEVQQRVAT-SAKGGLGIFASGYWGHPAYRLPP 181 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 E NL+AVAHYL+AL+ QR+ ++ + GK PH N VGG+A INLD +N RL Sbjct: 182 EANLMAVAHYLEALKWQREVIKLHTIFAGKNPH-PNYLVGGMATSINLDNQLTINKVRLD 240 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPE--FPTDSKNGSFLF 299 + I + FV++VY D IA FYPE+ + G + ++V E F Sbjct: 241 QLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTPAGKPV 300 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEGTTIPAYDG 355 G + + D + P + + E +WY D PW+G T P Y G Sbjct: 301 AAGLLMDGDYRTPHPFNP-------RMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPHYTG 353 Query: 356 -------WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 SD KY+W K+ + G+ V+VGP A +++ A G T N + I + Sbjct: 354 PKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANRDLGILKA- 412 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF----VKPNIP 464 V L+STLGR R + L ++ ++AL I GD +TF +P Sbjct: 413 -----GVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPE-S 466 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 + +G+GF+EA RG LSHW+ I +G IS YQ VVPSTWNS R+ N +GPYEQ+L G Sbjct: 467 WPKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQALAG 526 Query: 525 T---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+ D +P+EV+RTIHSFDPC++CAVH++ G VKV Sbjct: 527 DKKHPLVDAKRPVEVLRTIHSFDPCLSCAVHML-IPGGPAFEVKV 570 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 249/580 (42%), Positives = 333/580 (57%), Gaps = 42/580 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + +DPVTRIEGHLR++ +ENG + +S ++RG+E I+K RDPRDA QR CGVC Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKIIDVRSSSQLFRGLEIILKGRDPRDAQHFTQRSCGVC 77 Query: 65 TTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 T THAL+SVR ++A+ +D +P NA IRN++LAA HDH+VHFY L ALD+VD+++ Sbjct: 78 TYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSAC 137 Query: 123 LQADPTKASEMLKGVSTWHLNSP------EEFTKVQNKIKDLVASGQLGIFANGYW--GH 174 L AD KA+EM GV+ P + K ++ +K +V SG+LGIF N Y+ GH Sbjct: 138 LNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGGH 197 Query: 175 PAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV 234 PA LPPEVNLIA HYL+AL Q A R +A+ G K PH Q +GGV +GL Sbjct: 198 PAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVT---CYEGL-- 252 Query: 235 LNLERLMYIKSFI---DKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT- 290 YI F+ ++ DFV Y D +A FY +W G G N++S EFP Sbjct: 253 ----TDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIG-GTTNFMSCGEFPVP 307 Query: 291 --DSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGT 348 ++ S G I N +L + I E KHSWYKD A Q P+ G Sbjct: 308 GGETDLTSRYVKPGVIMNRNLGQVDALDPSK-------IAEHVKHSWYKDGAAQHPYNGV 360 Query: 349 TIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 T P Y D KYSW+K+P + GK VEVGPLA LV G + ++ ++ K Sbjct: 361 TDPMYTSLDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEFKTYVDFVL----KA 416 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 G E L STLGR R + C + + L N+ KGD ++PA+ + Sbjct: 417 LGVGPEA--LFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDICKDWDMPASAQ 474 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV-GTPV 527 GVG++ APRG LSHW+ IKD I N+Q VVPSTWN GPR ND GP E++L+ TP+ Sbjct: 475 --GVGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGPLEEALLDNTPI 532 Query: 528 ADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 ADP +P+E++RT+HS+DPC+AC VHV+D V ++L Sbjct: 533 ADPERPVEILRTVHSYDPCIACGVHVIDNKTGNVKKFRIL 572 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust. Identities = 237/594 (39%), Positives = 337/594 (56%), Gaps = 56/594 (9%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++R+ +DP+TRIEGHLRI+ E ++ +SKAWA T +RG+E +VK DPRD W V RIC Sbjct: 3 TERVVVDPITRIEGHLRIELEADDKKISKAWAETTQFRGIETVVKGHDPRDVWAFVGRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH+++SV A E A +I +P A+ IR +IL + HDH+VHFY L ALD+V++ S Sbjct: 63 GVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVNVVS 122 Query: 122 ALQADPTKASEMLKGV-STWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A QADP KA + + STW N+ + F +V+ ++ ++ SGQL +F GYW HP +LP Sbjct: 123 AAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDYRLP 182 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NL+AV+HYL AL+ QR R+ + GGK PH N VGG+A I+ D +N L Sbjct: 183 PEANLMAVSHYLDALQFQRSIIRINTVFGGKNPH-PNFLVGGMACSIDPDKSETVNQVSL 241 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV--------------- 285 IK + ++ DFV Y D I + Y ++ G+ + N+L+V Sbjct: 242 DQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQSSPNFLAVGMAGATYSGDPAESR 301 Query: 286 -PEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEA 340 P + K G FL + DL + P I E +WY DEA Sbjct: 302 IPTIHPEIKPGVFL-------DGDLHTVHPFEPWK-------ITEGISSAWYTYADGDEA 347 Query: 341 PQAPWEGTTIPAYDG------W-SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRES 393 P G T P Y G W +DD KY+W K+P + G+ +++GP+A +L+ G + Sbjct: 348 QLTPDVGETTPQYTGPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGEST 407 Query: 394 TQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD-ILQNQYSALITNIGK 452 T +++ + K G TLE QL+ST GR + R V D +++ + I Sbjct: 408 TVKLVDDAL----KTLGITLE--QLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAH 461 Query: 453 GDHTTFVKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPR 509 GD F + E KG+ F+E RGMLSH++ +KD + NYQAVVP+TW + PR Sbjct: 462 GDIDVFNGSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPR 521 Query: 510 NFNDDVGPYEQSLVGT---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 + +GPYE++L G P+ ++PLEV+RTIHSFDPCMACAVH++D +G E Sbjct: 522 DKTGQLGPYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/630 (39%), Positives = 345/630 (54%), Gaps = 67/630 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIE--NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS R+ IDPV+RIEGHLR++ E++ + V+ A ++GTMWRG+E IVKNRDPR+ W Q Sbjct: 1 MSSRVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVCTT HAL+SVR E AL+I++P NA YIRNI+L HDH+VHFY L ALDWV Sbjct: 61 RICGVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVS 120 Query: 119 ITSALQADPTKASEM-------LKGVSTWHLN--------------SPEEFTKVQNKIKD 157 A++ADP + + G+ + + + +P F Q+KIK+ Sbjct: 121 PLEAVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKN 180 Query: 158 LVASGQLGIFANGYWGHPAMK-LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 LV SGQLGIFA +W HP K LPPEV+LIAV+HYL L+ QR+ + GGK PH Sbjct: 181 LVQSGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPH 240 Query: 217 NLAVGGVANPINLDGLGV-LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WL 273 + VGG+ I++D + +N+ERL ++ + ++ Y +D I Y + W Sbjct: 241 YI-VGGMNCSISMDDMNAPINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGW- 298 Query: 274 TRGKG-----AVNYLSVPEFPTDS-KNGSF-----LFPGGYIEN----ADLSSYRPITSH 318 T G G + Y P+ P S KNG + G +EN D + Y P+T+ Sbjct: 299 TYGGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLTN- 357 Query: 319 SDEYLIKGIQESAKHSWYK---DEAPQAPWEGTTIPAYDG--------WS---DDGKYSW 364 D IQE HSWY+ + PW G T P Y G W ++GKYSW Sbjct: 358 KDLTNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYTGPKEGTKTHWKYLDENGKYSW 417 Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRES--TQNKLNEIVAIYQKLTGNTLEV---AQLH 419 +K P + EVGPLA ++ A ++ + ++E+V L L + + Sbjct: 418 IKEPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMP 477 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF-VKPNIPAT--GEFKGVGFLE 476 +T+GR R + C + L NI GD + ++ P+T + KGVG E Sbjct: 478 TTVGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITE 537 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 APRG L HW +IKDG I NYQAVVP+TWN PR+ G +E+S+ T V +PLE+ Sbjct: 538 APRGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEI 597 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +R+IHSFDPC+AC+ HV + EVVS K+ Sbjct: 598 LRSIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 245/629 (38%), Positives = 351/629 (55%), Gaps = 71/629 (11%) Query: 3 QRITIDPVTRIEGHLRIDCEIE--NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DP++RIEGHLR++ +++ +G V A +SGT WRG+E + K+RDPRD W VQRI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHAL+++RA E A+ I +P NA YIRNI+ ++ HDHIVHFY L ALDWV Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 121 SALQADPTKASEMLKGV-STWHLNS-------------PEE--------FTKVQNKIKDL 158 +AL ADP K +++ V +T++++ P+E FT VQ K+K + Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 159 VASGQLGIFANGYWGHPAMK-LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQN 217 V SGQLGIF+ +W HP LPPEV+L+AV+HYL L+ QRD + GGK PH Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 218 LAVGGVANPINLDGLGV-LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE-WLTR 275 + VGG+ I+++ + +N +RL ++ I D V+ Y D I Y E + Sbjct: 242 I-VGGMPCSISMNDMNAPINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMID 300 Query: 276 GKGAVN--YLSVPEFPTDSKNG---------SFLFPGGYIEN----ADLSSYRPITSHSD 320 G G +S ++P D+ G + G +EN D +++ P+ D Sbjct: 301 GGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEG-KD 359 Query: 321 EYLIKGIQESAKHSW--YKDEAPQA-PWEGTTIPAYDG--------WS---DDGKYSWVK 366 + + E HSW Y D P EG T P + G W +D KYSW+K Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFTGPKSGTKEKWEFLDEDKKYSWIK 419 Query: 367 SPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN--EIVAIYQKLTGNTLEVAQLHSTLGR 424 SPTF GKT EVGPLA +V ++ E + + Q T + + H + Sbjct: 420 SPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMTT 479 Query: 425 IIGRTVHCCELQ-----DILQNQYSALITNIGKGDHT----TFVKPNIPATGEFKGVGFL 475 ++GRT C L +I Q ++ L++NI GD T T +PN + KGVG + Sbjct: 480 MVGRTA-CRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNT-WDKDAKGVGLV 537 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 +APRG L HW+ IKDG +NYQ +VPSTWN+ P+ ++ G YE S++ T V +KPLE Sbjct: 538 DAPRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLE 597 Query: 536 VVRTIHSFDPCMACAVHVVDADGNEVVSV 564 +++ IHSFDPC+ACA H+ + G ++VSV Sbjct: 598 ILKVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 216/562 (38%), Positives = 316/562 (56%), Gaps = 37/562 (6%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 R IDP+TRIEGHLR++ E+ NG VS AW SG +RGME +V+NR P DA IVQRICGV Sbjct: 3 RSVIDPITRIEGHLRVEMEVTNGKVSDAWVSGGCFRGMEMVVENRTPEDAAQIVQRICGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +HA SS AAE A I + NA+ IRN++ A H HI+ FY L+ALD+V+ +AL Sbjct: 63 CPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPLNAL 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP---AMKLP 180 +ADP A ++ + T +NS +F ++ ++ + +GQL IF+ ++ A +LP Sbjct: 123 KADPADAYDLAQAAGT-SMNS--DFVALKERLANFADNGQLSIFSGNWFDAEDGTAYQLP 179 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE++LI AHYL+AL Q A+++ A++GGK PH+ L GG A V ++L Sbjct: 180 PELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAF--------VPTDQKL 231 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 +K+ D++ D+VE DT IA +Y + L GKG Y++ G F P Sbjct: 232 DELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGRYVAW---------GVFEGP 282 Query: 301 GGYIENAD--LSSYRPITSHSDEYLIKGIQES-----AKHSWYKDEAPQAPWEGTTIPAY 353 G Y + + Y P+ D+ + +QE+ SWYK +A T P Y Sbjct: 283 GDYASYTEQMANRYLPMGVIDDKLNLSDVQENLITEYMGRSWYKGDATYTSPYFVTEPEY 342 Query: 354 DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 ++ + +Y+WVK P + GK E G L+ + LAA + + + ++ + + L G Sbjct: 343 TEYNVEDRYTWVKCPAYDGKPYEAGGLSRV---LAAYKRNVPFVVEQVDGLLEAL-GAPG 398 Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVG 473 ++ STLGR R + + ++++ + LI + GD F +P+ TG G G Sbjct: 399 QIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGDSEYFREPST-ITG--AGTG 455 Query: 474 FLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 F EAPRG L H IKDG I YQ ++P+TWN P N + + GP EQ+L+G PV D KP Sbjct: 456 FWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQALIGNPVGDIEKP 515 Query: 534 LEVVRTIHSFDPCMACAVHVVD 555 + +RT+HSFDPC ACAVH+ + Sbjct: 516 INALRTVHSFDPCTACAVHITE 537 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 208/561 (37%), Positives = 307/561 (54%), Gaps = 32/561 (5%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 R TIDP+TRIEGHLR++ E+ +G+V+ AW SG +RGME +V++R P+DA IVQRICGV Sbjct: 3 RTTIDPITRIEGHLRVEMEVNDGIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRICGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +HA ++ AAE A I +P +A+ IRN++ A H HI+ Y L+ALD+V+ +AL Sbjct: 63 CPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPLNAL 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--------GHP 175 AD A ++ + L + +F +Q+++ +GQL IF+ ++ G Sbjct: 123 NADTGLAYDV---AEEYGLKN-ADFVSLQDRLARFADNGQLSIFSGNWFPTAEQYADGTN 178 Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 L PE +LI AHYL+ALE Q A+ + A+LGGK PH+ L GG + V Sbjct: 179 EYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGT--------MFVP 230 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS-KN 294 ++L +K ID+L ++V V D+ + FYPE G G Y + F +S K Sbjct: 231 TDQKLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGCRRYGAWGVFERESFKM 290 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYD 354 P G IE +Y+ S +E I E HSWY P+E P Y Sbjct: 291 ADRYMPSGVIELGPDGNYQ--LSEVEE---SKITEYVGHSWYSGSEDLPPFEQGVNPEYT 345 Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 ++ D +Y+W K + GK +E+G + +LV G + + ++ A+ L G + Sbjct: 346 EYNTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIKEHVD---ALLVALGGTPGD 402 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 ++ ST+GR R V + +++ + L+ I GD T F K + E +G GF Sbjct: 403 LSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYFTKSD---AVEGEGTGF 459 Query: 475 LEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 EAPRG L H +K+G I +YQ ++P+TWN P + + GP EQ+L+G PV D KP+ Sbjct: 460 WEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVHGPMEQALIGVPVTDMEKPI 519 Query: 535 EVVRTIHSFDPCMACAVHVVD 555 +RT+HSFDPC ACAVHVV+ Sbjct: 520 HALRTVHSFDPCTACAVHVVE 540 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 200/568 (35%), Positives = 293/568 (51%), Gaps = 58/568 (10%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++ IDPVTRIEGHL+++ E+ NGVV+ A + GTM+RG E +++ RDPRDA + +R CGV Sbjct: 3 KVVIDPVTRIEGHLKVEVEVTNGVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H +S A + A VP + IRN+++ A HDH +HFY LSALD++DIT+ Sbjct: 63 CAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITA-- 120 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 V+ + P +V++KI L+A+G Y PE+ Sbjct: 121 -------------VAKYQGQDP-GLLRVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPEL 166 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 +AV+HYL AL Q A ++ AL GK PH ++ GGV + N+E + Sbjct: 167 VTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAGGVTM--------LPNIEVVEQF 218 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR---GKGAVNYLSVPEFPTDSKNGSFLFP 300 +S + + D++E +Y D L + G G N+L+ F D + FLF Sbjct: 219 RSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGLDDEGKDFLFK 278 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIPAYDGWSDD 359 G + + +LS+ P+ I E H+WYKD P++ T+P + Sbjct: 279 QGIVLDGNLSNVMPVDQSK-------ITEGVTHAWYKDNPNGDHPYDSDTVP---DLAKK 328 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS+VK+P + GK +EVGPLA MLV G L +I+A Y G Sbjct: 329 DAYSFVKAPRYDGKPIEVGPLARMLVMQPQG-------LMDIIAKYNIKPG--------- 372 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKP-NIPATGEFKGVGFLEAP 478 + R R L + N + L +GKG + N PATG+ G+G E P Sbjct: 373 -AVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPPATGQ--GIGLTEVP 429 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L HW+ IKD + NYQ VVP+TWN P++ + GP E++L+G P+ D N P+ +VR Sbjct: 430 RGALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVR 489 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVKV 566 I S+DPC+ACA+H++D NE+ KV Sbjct: 490 VIRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 332 bits (850), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 208/575 (36%), Positives = 301/575 (52%), Gaps = 62/575 (10%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 Q+I IDP+TRIEGHL+I+ ++ G V A GT++RG E +K+RDPRDA I QRICG Sbjct: 2 QKIVIDPITRIEGHLKIEATVDGGEVKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRICG 61 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 VC T+H ++ ++A + +P N + +RN+I A+ HIVHFY L+ALD+VD+T Sbjct: 62 VCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVT 121 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA-MKL 179 D T E KV++ I +A+G + + A Y + +L Sbjct: 122 EVADYDGTDP----------------ELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRL 165 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P +V AVAHY++AL +R A+ + A+ G+ PH + GGV + ++D Sbjct: 166 PKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAGGVTSHPSIDS-------- 217 Query: 240 LMYIKSFIDKLSD---FVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 I SF+ KL+ F++ VY D +A YP++ G G N LS F ++ + Sbjct: 218 ---ISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDYFGIGVGCGNLLSYGVFDLEANGTN 274 Query: 297 F-----LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 LF G + +DL T H+ + I E K+ W+K E + P T P Sbjct: 275 LATRQRLFTQGTVSASDL------TLHT--FDPNKITEDIKYGWFKGETNEYPLNEVTEP 326 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 D +G YSW+K+P + EVGPLA M+V AG Q +N+ +A + Sbjct: 327 --DHTKAEG-YSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMVNDTLAHFGAGP-- 381 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 A L STLGR R + C I+ ++ + + G+ IP + E G Sbjct: 382 ----AALFSTLGRHAARALEC----KIVADEMVKWVMELKIGEPVC-ADYEIPESAE--G 430 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 +G EAPRG L HW+ I++ ISNYQ VVPSTWN P++ GP EQ+L+GT V D + Sbjct: 431 MGLWEAPRGALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPVEQALIGTKVRDND 490 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P E+VR + SFDPC+ACAVH+V GNE+ +V Sbjct: 491 NPFELVRIVRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 198/555 (35%), Positives = 285/555 (51%), Gaps = 59/555 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS + +DP TRIEGHL + ++N V A +G M RG E+I++ R P DA IVQRI Sbjct: 1 MSSIVKLDPFTRIEGHLAVSLNVQNNRVKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +H ++SV A E A I +P NA+ RNI+LA++ HI HFY LSALD++DIT Sbjct: 61 CGVCPVSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQL---GIFANGYWGHPAM 177 + L KG + L +QN +K +AS L F Y G Sbjct: 121 AILD---------YKGGDAFLL-------AMQNWVKAELASKNLFPAAPFLPRYQGRYLK 164 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 + + N+ A+ +Y ALE + A++++A+ GK PH+ ++ GG+ + Sbjct: 165 DV--DFNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPGGITEKV--------TT 214 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 ++++ KS + +L F+ Y+ D I A +P +L+ GK N+LS F + S Sbjct: 215 KKIIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGNFLSFGAFGDANLEKSP 274 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 L P G + L I+ I+E S Y ++ + T+P Sbjct: 275 LLPAGALLQGKLEEVDDIS----------IKEDVSFSKYSSDSGRE----KTVPEP---H 317 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 G YSW+K+P + G+ +EVGPLA ++V A G + Q N A QK L + Sbjct: 318 KSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASN---AFLQK---TDLSLTD 371 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 L S LGR I R + EL+ I++ + + D T V NIP E G G +EA Sbjct: 372 LDSCLGRHIARFI---ELEVIIEKCEEWM--EQLRPDQPTAVDFNIPQQAE--GRGMMEA 424 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW+ I+ I Y+ +VP+TWN P++ GP EQSL+GT VAD PLE Sbjct: 425 PRGALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGTIVADKTNPLEAA 484 Query: 538 RTIHSFDPCMACAVH 552 R + S+DPC+ACAVH Sbjct: 485 RIVRSYDPCLACAVH 499 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 191/492 (38%), Positives = 265/492 (53%), Gaps = 56/492 (11%) Query: 87 NAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKAS-EMLKGVSTWHLNSP 145 NA+YIR++IL+ HDHIVHFY L +DW+D+ SAL ADP KA+ E +K +T Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 146 EEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVV 205 E VQ K++ LV +G LG FAN YWG+P K PE NLI ++HYL+ALE QR A + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 206 ALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI 265 AL GGK PH Q++ VGGV ++ L+ RL K +++FVE+ Y D + Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDM-----LDPARLQEFKQKFQHVAEFVERAYYADLVMA 175 Query: 266 AAFY---PEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEY 322 A Y P+ L G +++ + + LF G I N DL SH++ Sbjct: 176 AKAYATSPDVLG-GCNVHTFMAAESILLNPDD--HLFTDGVIRNCDL-------SHAENV 225 Query: 323 LIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW-------------SDDGKYSWVKSPT 369 I+E H+WY + PQ P++GTTIP + ++ GKYSWVKSP Sbjct: 226 DPSLIEEDVTHAWYDAKQPQHPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWVKSPR 285 Query: 370 FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 + G+ VEVGPLA + V A G + + ++E LT L L +TLGR R Sbjct: 286 YNGEPVEVGPLATIAVNYARGNKPVVDVVDEF------LTKTGLPAQALFTTLGRTAARM 339 Query: 430 VHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK 489 +H + + +++ N+ D TT++KP I E+KGVG LEAP + Sbjct: 340 LHTTVIARHGLETFESMVANL-NSDQTTYIKPTIDPDKEYKGVGILEAP---------LS 389 Query: 490 DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 G +N + W P + N +GPYE SLVG +A+P KPLE++R IHSFDPCMAC Sbjct: 390 SGCPNNLE-----RW---PYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCMAC 441 Query: 550 AVHVVDADGNEV 561 +VHV+D G + Sbjct: 442 SVHVMDYKGQSL 453 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 201/568 (35%), Positives = 286/568 (50%), Gaps = 99/568 (17%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +++I +DPVTRIEGHL+I+ E++ V AW++G ++RG+E I+K RDPRDA I QRIC Sbjct: 4 ARKIVVDPVTRIEGHLKIEVELDGNRVHDAWSTGLLFRGLEIILKGRDPRDAQHITQRIC 63 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GV +H +SSV + A I P N + +RN+I A+ HI+HFY L+ALD+V Sbjct: 64 GVUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYV---- 119 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 KG T +P F Y G +LPP Sbjct: 120 -------------KGPET----AP---------------------FVPRYEGD--YRLPP 139 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 +V + V HY+QAL +R A+ + A+ G K PH GGV + + E++ Sbjct: 140 DVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTS--------TVTAEQVE 191 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFP-TDSK--NGSFL 298 + +L F++ VY D +A Y +W + G G N LS +P TD K NG L Sbjct: 192 AYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKDPNGKNL 251 Query: 299 F--PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP-QAPWEGTTIPAYDG 355 F G Y S+ P+++ I+E HSWY+ +A + P+EG T+PA D Sbjct: 252 FFTRGVYAGG----SFMPMSADH-------IREHVTHSWYESKAGGKHPFEGETVPAVD- 299 Query: 356 WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 G YSW+K+P + + EVG LA V GR+ L + Sbjct: 300 --KRGGYSWIKAPRYESYSCEVGALARQWV----GRDPQVIGLGD--------------- 338 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 + S +GR R + ++ + L + F ++P KG G Sbjct: 339 -KAFSVMGRHFARAIETTKVAHAMLGWLEEL-----EPGQPAFRPHDVPEKA--KGFGLT 390 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 EAPRG L HW+ I++ +I NYQAVVPSTWN GPR+ GP E++LVGT VADP+ P+E Sbjct: 391 EAPRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALVGTEVADPDNPIE 450 Query: 536 VVRTIHSFDPCMACAVHVVDADGNEVVS 563 +VR + +FDPC+ACAVHV++ G VS Sbjct: 451 LVRIVRAFDPCIACAVHVMEVRGGSGVS 478 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 181/560 (32%), Positives = 279/560 (49%), Gaps = 68/560 (12%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I I PVTRIEGHL + +ENGVV A G M+RG E +++ RDP D+ I QRICGV Sbjct: 2 KIDIGPVTRIEGHLNVQTTVENGVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICGV 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA++S A E A + VP N + + N+I A+ +DH++HFYQL ALD+VDIT+ L Sbjct: 62 CPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAVL 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP-- 181 + + E +KV++ +K V SG+ +PA P Sbjct: 122 E----------------YTGRDPELSKVRDWVKAEVDSGKR---------YPAAPFLPRL 156 Query: 182 --------EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLG 233 + NL A+ +YL A+ ++ AN+ A+ GG+ PH ++ GG ++D Sbjct: 157 DGKYLDNRDANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPGGCTQNASID--- 213 Query: 234 VLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD-S 292 ++ +S I ++ DF+ Y D +A +PE+ G+ +LS P + Sbjct: 214 -----LILAYQSLIREVRDFIHLKYIPDVLAVAGAFPEYWEIGQSKGGFLSYGHMPLGPA 268 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPA 352 +N L G + LS+ + I++ H+ Y + + +P Sbjct: 269 RNSERLLAPGVLLGDQLSAVE----------LGKIRQDVNHALYSSASNLTVRDAAIVPQ 318 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 D + YSW+ +P + G+ VEVGP A ++V A G KL E A + ++ N Sbjct: 319 PDKGGE--AYSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFAGHANISAN- 375 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 QL+S LGR + R + + D + + L T + + PA+GE G Sbjct: 376 ----QLNSVLGRHLSRAILAAVIADFVLAESERL-----DPAAPTMAELDPPASGE--GF 424 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G EA RG L H++ I++ I+ Y+ VVP+TWN+ PR+ G E +L+GT V +P + Sbjct: 425 GITEASRGALLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGTRVQNPEE 484 Query: 533 PLEVVRTIHSFDPCMACAVH 552 +E R + SFDPC+ACAVH Sbjct: 485 QIESKRIVRSFDPCLACAVH 504 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 190/543 (34%), Positives = 257/543 (47%), Gaps = 75/543 (13%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 I IDPVTRIEGHL+ + +ENG V A SG M+RG E I++ RDPRDA IVQRICGVC Sbjct: 19 IAIDPVTRIEGHLKAEVVVENGKVVDARLSGGMYRGFETILRGRDPRDASQIVQRICGVC 78 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 T H+ +SV A + A VP N + RN+I A+ HI+HFY LSA D+V Sbjct: 79 PTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAP 138 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVN 184 P F K ++L E+N Sbjct: 139 FVP-------------------RFPKSD------------------------LRLSKELN 155 Query: 185 LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 V Y++ALE +R + +VAL GG+ PH+Q VGG + E+L+ Sbjct: 156 KAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATE--------IPTKEKLVEYA 207 Query: 245 SFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF-PGGY 303 + K+ DFVEQ Y I + Y + G+G L V FP D+ LF PG Y Sbjct: 208 ARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPLDNSGKKHLFMPGVY 267 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPW-EGTTIPAYDGWSDDGKY 362 + D+ + P I+E K+SW+ +E + EG TIPA D G Y Sbjct: 268 AKGKDMP-FDP----------SKIKEYVKYSWFAEETTGLNYKEGKTIPAPD---KAGAY 313 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 S+VK+P + G ++EVGPLA M V + L ++ I K + E A S + Sbjct: 314 SFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAF-SLM 372 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 GR + R + ++ + K T V P +PA+ E G GF EAPRG L Sbjct: 373 GRHVARAEETYYMLGAIEGWLKEI-----KAGEDTVVMPAVPASAE--GTGFTEAPRGSL 425 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H++ +KD I NYQ V S WN PR+ G E++L+G PV D P+ V R I + Sbjct: 426 LHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRA 485 Query: 543 FDP 545 FDP Sbjct: 486 FDP 488 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 188/560 (33%), Positives = 272/560 (48%), Gaps = 69/560 (12%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I+IDP+TR+EGHL+I+ E+++G V A SG M+RG E+I++ RDPRD+ IVQRICGV Sbjct: 14 KISIDPLTRVEGHLKIEVEVKDGKVVDAKCSGGMFRGFEQILRGRDPRDSSQIVQRICGV 73 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +SV A + A + V N + RN+I A+ HI+HFY L+ALD+V Sbjct: 74 CPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVS 133 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P A+ L + ++IKD G A+ Sbjct: 134 PFVPRYANADL----------------LTDRIKD-------GAKADA------------T 158 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N + YL+ALE +R + +VA+ GG+ PH+Q + VGG D + R + Sbjct: 159 NTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEY-AARFKEV 217 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF-PGG 302 + F+ + +++ +Y + + Y + G G N ++ FP D +FL PG Sbjct: 218 QKFV--IEEYLPLIY-----TLGSVYTDLFETGIGWKNVIAFGVFPEDDDYKTFLLKPGV 270 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWE--GTTIPAYDGWSDDG 360 YI+ D +E+ K ++E HS++ AP G T P D G Sbjct: 271 YIDGKD-----------EEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPD---KPG 316 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 YS+VK+P + K EVGPLA M V+ Q L E+ I K + L Sbjct: 317 AYSFVKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAK------KFRDLGD 370 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 I+GR V E + + + G T +VK IP E G GF EAPRG Sbjct: 371 KAFSIMGRHVLVAEETWLTAVAVEKWLKQVQPGAET-YVKSEIPDAAE--GTGFTEAPRG 427 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H++ IKD I NYQ V + WN+ PR+ GP E++L+G PV D P+ V R + Sbjct: 428 ALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLV 487 Query: 541 HSFDPCMACAVHVVDADGNE 560 S+DP + CAVHV+ A+ E Sbjct: 488 RSYDPULGCAVHVLHAETGE 507 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 265 bits (676), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 179/573 (31%), Positives = 287/573 (50%), Gaps = 79/573 (13%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S+RITIDP++R+EGHL+I+ +E+GV+++A A+G ++RG+E+ + D R A + QR+C Sbjct: 7 SKRITIDPLSRVEGHLKIETRVEDGVITQARAAGLLFRGLEKALIGYDARVAQQVTQRVC 66 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC HA ++ A E A+ I N Q +RN+I A+ HD ++HFYQLSALD++DI + Sbjct: 67 GVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSALDFIDIEA 126 Query: 122 ALQ---ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM- 177 L DP +L V W +++ V S ++ + G P + Sbjct: 127 VLAYKGGDP-----VLAAVRQW--------------VEEEVRSSRI------FPGAPFLP 161 Query: 178 ------KLPPEVN-LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLD 230 +LP + + L+ V +Y D ++VA+ GGK PH + GGV L Sbjct: 162 RYRHDDQLPGDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHPVAIEAGGVTTRPTLG 221 Query: 231 GLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT 290 L ++ + + FV Y+ D + +P + G+G N+LS P P Sbjct: 222 --------MLAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGNFLSFPFLP- 272 Query: 291 DSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA--PWEGT 348 ++ + LF GG + N + ++P+ + I E +++Y+ ++ A P + Sbjct: 273 EADGDNHLFAGGALLNGE---HQPLE-------LDAINEDHTYAFYRQQSGTALPPLATS 322 Query: 349 TIPAYDGWSD--------DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNE 400 + D W + GKYSW ++P + G+ +EVG A ++ G L E Sbjct: 323 RLTPLD-WQEFQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQG---GNQALKE 378 Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 +V + G T VA +S +GR + R + + L+ Q + + F + Sbjct: 379 LVDHTNRELGIT--VADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGV-----LGFEE 431 Query: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 +P +GVG EA RG L HW+ KDG+I NY+ VVPSTWN GP++ G E Sbjct: 432 REVPRNA--RGVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPGAVE 489 Query: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 + L+GT +++P +PLE R S DPC+AC+VH Sbjct: 490 KMLLGTRISNPEQPLEAARIARSADPCIACSVH 522 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 178/567 (31%), Positives = 286/567 (50%), Gaps = 67/567 (11%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+ RI IDP++R+EGHL+I+ I++GV+++A A+G ++RG+E+ + D R A + QR+ Sbjct: 1 MTTRIVIDPLSRVEGHLKIETTIKDGVITEARAAGLLFRGLEKALIGYDARVAQQVTQRV 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA ++ A E+A+ I P N Q +RN+I A+ HD ++HFY LSALD++DI Sbjct: 61 CGVCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIK 120 Query: 121 SALQ---ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIK-DLVASGQLGIFANGYWGHPA 176 L+ +DP +L V W VQ +++ + + G F Y Sbjct: 121 KVLRYRGSDP-----VLNRVRDW----------VQAELRSERIFPG--APFLPRYRDDDQ 163 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 +L+ V +Y + D +++VA+ GGK PH + GGV L G+ Sbjct: 164 SWDQ-SDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHPVAIEAGGVTTRPTL-GM---- 217 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 L + ++ ++++ FV Y+ D + +P + G+G N LS P P ++ + Sbjct: 218 ---LAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLLSFPFLP-EADGEN 273 Query: 297 FLFPGGYIENADLS-SYRPITSHSDEYLIKGIQESAKHSWYK--DEAPQAPWEGTTIPAY 353 LF GG A L+ YR + + I E S+Y+ + +P AP + Sbjct: 274 HLFAGG----ARLAGEYRQLE-------LDAISEDHTFSFYRQPEPSPLAPLATHLLTPL 322 Query: 354 -------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQ 406 + DGKYSW+++P ++G+ +EVG +A ++ R + E V Sbjct: 323 NRQEFQAENERLDGKYSWIRAPRYHGEVMEVGAVARVINSYHHNR-----AVKEEVDRTN 377 Query: 407 KLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT 466 + G TL A +S +GR +GR + + + L+ Q + + F + +P Sbjct: 378 RELGLTL--ADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGV-----LGFSELEVPRN 430 Query: 467 GEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 GVG EA RG L HW+ +G+I NY+ V+PSTWN PR+ G E+ L GT Sbjct: 431 A--VGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQGT 488 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVH 552 + +P +PLE R S DPC+AC+VH Sbjct: 489 RIKNPEQPLEAARIARSADPCIACSVH 515 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 167/556 (30%), Positives = 250/556 (44%), Gaps = 98/556 (17%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I I+P TR G +++ +E G V A T++RG E I+++RDPRDA I QRIC Sbjct: 8 GQKIVINPTTRTLGASQVEVRVEAGRVIHARCGATVFRGFELILRDRDPRDAAYITQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T HA+++ A E + P N +RN+I A +HI HFY + D+V Sbjct: 68 GICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYV---- 123 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 PE V D +LP Sbjct: 124 ---------------------RGPECRPLVPPPTTD-------------------YRLPR 143 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 N V Y QA++ R A + ALLGGK PH + GG + P+ + VLNL Sbjct: 144 AKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPGGSSVPVT--AITVLNL---- 197 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 S + + FVE+ D +A YP++ G ++L+ FP D + FPG Sbjct: 198 --LSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFLNFGLFPLDPEASGHHFPG 255 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + + + + S E I E +++ ++ E P G T P D G Sbjct: 256 AAVIDGRMEAV-----DSGE-----ISEHLRYTHFEGEQLAHPARGETRPNPD---KPGG 302 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW K+P + G+ +E GPLA + V+ Y++ S Sbjct: 303 YSWCKAPRYRGRALEGGPLAQLWVR----------------GDYRRGV----------SV 336 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R+I R + E+ +++ +AL + F + +P +G GVG A RG Sbjct: 337 MDRLIARALISREVAGLMRKWLTAL-----RPGQPVFNRYQVPESG--TGVGLTGAMRGG 389 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L HW+ ++ G I +YQ V P+ WN P + GP E++L+GTPVAD +P+E+ R +H Sbjct: 390 LGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEALIGTPVADAKEPVEIGRVLH 449 Query: 542 SFDPCMACAVHVVDAD 557 SFDPCM+C HV+ D Sbjct: 450 SFDPCMSCVAHVIVLD 465 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 172/556 (30%), Positives = 286/556 (51%), Gaps = 55/556 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++TIDPVTRIEGHL+++ IE+ V+ +A S M+RG+E+ ++ D A I QR CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIEDSVIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCGC 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA ++ A E+AL I++ N + +RN+++ A+ D+++HFY LSALD+++I+ L Sbjct: 62 CPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDIL 121 Query: 124 QADPTKASEM-LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + + LK ++S + F +F+ Y A + Sbjct: 122 NYNGNDFDMLELKKYVLKEISSKKVFPN--------------PLFSQKYKN--AYIKNKD 165 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA-NPINLDGLGVLNLERLM 241 +N+ + HYL++ E + + +V + G K+ H+ + GGV P ERL+ Sbjct: 166 LNITLINHYLKSFEAMKKMSEMVKIFGSKSTHMVTIEAGGVTTRP---------TAERLV 216 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 S + F+E Y D +A + E+ GKG N+L+ + +GS+LF G Sbjct: 217 KYISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDNFLTFDTLL--NLDGSYLFTG 274 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP--AYDGWSDD 359 G+ + D I ++ I E +++YK+ P E T + +D + + Sbjct: 275 GF--SKDFEYEEGIEPYN-------IIEYNNYAYYKENGGYKPLELTELTPLTFDEFKQN 325 Query: 360 -GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 KYSW K+P + G VEVGP A ++ G++ KL +V + + G +++ Sbjct: 326 HTKYSWSKAPRYKGHVVEVGPAAIVINNYLRGKDE---KLISLVDKFNRELG--IDIKDY 380 Query: 419 HSTLGRIIGRTVHCCELQD-ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 +S +GR + R + + D I+++ +L+ GK KP P+ KG+G EA Sbjct: 381 NSVMGRHLSRAIISKLIIDKIIED---SLMVEEGKLGFIQLKKP--PSN--VKGIGLTEA 433 Query: 478 PRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 RG L+H++ I ++G I NY+ +VP+TWN P++ + G E L+GT + D N P+E+ Sbjct: 434 TRGALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESMLIGTEIRDINNPVEI 493 Query: 537 VRTIHSFDPCMACAVH 552 R I S DPC+ACAVH Sbjct: 494 ARIIRSTDPCLACAVH 509 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 163/569 (28%), Positives = 261/569 (45%), Gaps = 98/569 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+++I I+P+TRI G + ID IEN V A G ++RG E+++ R P DA QRI Sbjct: 1 MNKKIVINPLTRISGFMEIDVYIENNRVVDAKTKGHLFRGFEQMLVGRSPFDAVYFTQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H+++S A E ALNI +Y+R+II +H+ HFYQ + D+V + Sbjct: 61 CGICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLE 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S NS +F H +LP Sbjct: 121 S---------------------NS---------------------LFNT---DHHDFRLP 135 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N HY ++LE R A++++A+LGGK PH + +GG+ E + Sbjct: 136 KQINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIGGITTQA--------TAENV 187 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS-FLF 299 + + + K+S F+ D IAA+Y ++ G G N L+ F G+ ++ Sbjct: 188 VKLDDSLQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGNLLTYGAFNNYKDLGTLYVD 247 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPAYDGWSD 358 P NA+ + P K I+E +SWYK A P P D + Sbjct: 248 PLISKMNANNNLVEPFQE-------KNIKEKIDYSWYKASNAAYRPDSEMAEP--DMEMN 298 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + YSWVK+P + G EVGPLA +++ QN + Sbjct: 299 EKAYSWVKAPRYEGLPFEVGPLARLILS-----GEYQNGI-------------------- 333 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 S + R + R + ++ +I++ ++I N+ ++ + G G ++ Sbjct: 334 -SAMDRTLARALEAKKICEIMKELLHSVIPNVD-------LQKAYEIPEQASGRGLVDTI 385 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L HW+ +++ IS YQ + PSTW+ ++ G E++L+GTP+ DPN P EV R Sbjct: 386 RGALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGTPINDPNNPAEVGR 445 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVKVL 567 + SFDPCM+CA HV + G ++ ++KV Sbjct: 446 ILRSFDPCMSCATHVY-SPGKQMKTIKVF 473 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 168/557 (30%), Positives = 269/557 (48%), Gaps = 83/557 (14%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ +T+DP+TRIEGH+ ++ +E+G VS+ +G M+RG E ++ R P D+ I QRI Sbjct: 1 MSKLLTVDPLTRIEGHMSVETAVESGKVSEVRIAGNMYRGFERMLLGRHPVDSARIAQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC H +SSV A E I P N +R++IL H DHI+HFY L D+V+++ Sbjct: 61 CGVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLS 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQ---NKIKDLVASGQLGIFANGYWGHPAM 177 SA A L+ +S W +S F + + N IKD ++ + + Sbjct: 121 SA--AGYNGKDRDLRNISDWLSSSGTAFMQNRTEGNYIKDKDSARRFAL----------- 167 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +Y +A++ + A +A+LG K P I L GG+ I D L Sbjct: 168 ------------NYFEAIKIRSQAAGGLAILGAKVPFIHALMPGGITTEITTDAL----- 210 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + Y ++ +D ++FV + D IA +PE+ G+ + + F +S G Sbjct: 211 --MKYYRA-LDATAEFVSSSFMPDVIEIAQRFPEYFDIGEAYNTFYAHQSF--NSAKGD- 264 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 LF G I + + ++ ++E S+YK A +P E Sbjct: 265 LFTQGVIADGE----------KVDFDYNKVKELIGSSYYK--ADGSPDENA--------- 303 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 +G YSW+K+P + G +E GP+A + A G + E ++ ++L +++ Sbjct: 304 -EGAYSWIKAPRYDGIPLETGPIA----RAAVGND------EEFKSLLRRLGQKSIK--- 349 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S +GR++ R L + L + + IGK V P +GE G+GF A Sbjct: 350 -SSVMGRLLARAHESVMLCNYLYGRTEEYV--IGK-PAIRAVDLQAPVSGE--GIGFSVA 403 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV--ADPNKPLE 535 RG L H + G +++Y+ +VPSTWN GP + +G E++++GTPV + +E Sbjct: 404 ARGALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGTPVNYGGVSGSIE 462 Query: 536 VVRTIHSFDPCMACAVH 552 V R I SFDPC AC++H Sbjct: 463 VGRVIRSFDPCTACSIH 479 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 166/552 (30%), Positives = 248/552 (44%), Gaps = 99/552 (17%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 T+ PVTRI +R++ +++ G V AW ++RG+E ++ RD RDA + VQRICG+C+ Sbjct: 5 TLFPVTRIHEPIRVEVDVQGGRVVDAWIGACLFRGVELMLTGRDVRDAPLFVQRICGICS 64 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 + HA+++ +A SA + QY+ N+++AA +H+ HFY L D+V + Sbjct: 65 SAHAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGPDSAPF 124 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 P + +LP ++N Sbjct: 125 FPRTKGDF--------------------------------------------RLPKKLND 140 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 H AL+ A+ ++AL G K PH Q + GV N ERLM + Sbjct: 141 ELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMPTGVTE--------RANAERLMAYGA 192 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIE 305 + ++ ++VE+VY D IA +Y ++ T G+G ++LS FP + G FP G +E Sbjct: 193 ILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGHFLSYGGFP-EPGTGQPAFPVGLVE 251 Query: 306 NADLSSYRPITSHSDEYLIKGIQESAKHSWYKD-EAPQAPWEGTTIPAYDGWSDDGKYSW 364 N L +T I E H WY+D + + P EG T A D YSW Sbjct: 252 NGGLPQPLDLTR---------ITEHIHHGWYQDDQESRHPIEGRTAAAPD---KSAAYSW 299 Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGR 424 K+P + E GPLA + + E + S + R Sbjct: 300 CKAPRYGRLPAETGPLARAWI--------------------------SGEYRRGISVMDR 333 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 +I R ++ + Q + I G T +P GE GVG LEA RG L H Sbjct: 334 LIARAREALKICRLAQE----WLARIAPGA-PTLAPYTLPPRGE--GVGLLEAMRGALGH 386 Query: 485 WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 W+ ++G IS+YQ V P+ WN PR+ GP E++L+GTP+A P +EV R I SFD Sbjct: 387 WLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPIAAPESLIEVGRVIRSFD 446 Query: 545 PCMACAVHVVDA 556 PC CA H++ A Sbjct: 447 PCFTCAAHLISA 458 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 162/571 (28%), Positives = 268/571 (46%), Gaps = 105/571 (18%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + ITIDP+TRI G L I ++E+ ++ SG ++RG E++++ R P D+ +RI Sbjct: 1 MGKIITIDPITRISGFLEIKVKVEDNIIVDGETSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T HA +S A E+ALNI +N YIR+++ +H+ FY + +V++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + P + S+ +LP Sbjct: 121 NIRPIYPQEYSDF--------------------------------------------RLP 136 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N +HY + ++ R A+ +A+LGGK PH + VGGV +N+D +L Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVT--VNIDSY------KL 188 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT-DSKNGSFLF 299 I+S + + FV D +IA +YPE+ G N++S F KN S++ Sbjct: 189 TKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVK 248 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY-KDEAPQAPWEGTTIPAYDGWSD 358 PG I N + + I E+ +++WY D + P Sbjct: 249 PGVIINNK-----------LENFDRDKITENIRYAWYVSDTIIENPIMNNEYTV--DLKK 295 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 +G YS+VK+P + +EVGPLA + + AG + N Sbjct: 296 EGAYSFVKAPRYADLPMEVGPLARLKI---AGEYTGGN---------------------- 330 Query: 419 HSTLGRIIGRTVHCCELQDILQN--QYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 S++ R I R + ++ +IL N + L++N + + + NIP G F G G ++ Sbjct: 331 -SSMDRNIARVLETKKIINILYNISEKIQLLSN----NQSAY---NIPE-GAF-GEGLID 380 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 RG LSH++ I++ I Y + P+ WN P++ G E+SL+G+ + + KP+E+ Sbjct: 381 TTRGALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGSKIDNIEKPVEI 440 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 R I SFDPC++CA H+V ++ NE V V+VL Sbjct: 441 GRIIRSFDPCISCATHLV-SNNNEPVKVEVL 470 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 182/565 (32%), Positives = 266/565 (47%), Gaps = 73/565 (12%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + IDPVTRIEGH + ++E+GVV A + TM+RG E IV RDP+DA +++QRICGVC Sbjct: 3 VVIDPVTRIEGHHGVRLKVEDGVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGVC 62 Query: 65 TTTHALSSVRAAESALNI------DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 H L+S+ A E+A + +P A +RN I A DH V Y L+ D+ D Sbjct: 63 HNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYCD 122 Query: 119 I---TSALQADPTKASEMLKGV-STWHLNSPEEFT--KVQNKIKDLVASGQLGIFANGYW 172 T ++ DP + + V + L+ + KV + + + L I AN Sbjct: 123 AIHKTGLVRFDPIVGRGVKEAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIIS 182 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRD-ANRVVALLGGKTPHIQNLAVGGVANPINLD- 230 ++ L + + V ALE RD A V+ + K GV P N Sbjct: 183 KLISIVLDVKKWALGVGLGKTALEHARDVAGYVIDDVSKKLEK-------GVVEPPNDPE 235 Query: 231 -GLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFP 289 G G+ +L L+ + + + L D E+ P L G +L+ P Sbjct: 236 VGKGLYDLVSLILVMANLG-LKDMGERT------------PTMLAYG-----FLADP--- 274 Query: 290 TDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA-PWEGT 348 NG FP G+ +L + +Y + I E K+S+Y DEA + E Sbjct: 275 ----NGELFFPSGFFNGKELEKF--------DY--RNIGEDVKYSYYDDEAGGSYVGEED 320 Query: 349 TIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 T + G Y+W K+P + G EVGPLA M+ K R+ + + + + + + L Sbjct: 321 TRKLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAK--GYRDGWE--VGDPLDLRKNL 376 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 G + L R I R L D L+N L GK +VK I + Sbjct: 377 AGGR----TASNALARNIARIQEELVLIDYLENLLLELKDYAGK---KAYVKYEI---ND 426 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 GVG EAPRG L HW+ I+ G I NYQ + P+TWN PR+ D +GP E++L+GTP++ Sbjct: 427 GDGVGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRDSKDQMGPLEEALIGTPIS 486 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHV 553 + ++ V+R IHSFD C+AC VHV Sbjct: 487 ESDQ-WNVIRVIHSFDLCLACTVHV 510 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 157/564 (27%), Positives = 247/564 (43%), Gaps = 101/564 (17%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++ I P TRI + ++ +ENGV+ A+ S T++RG E+I++ R D QRICG Sbjct: 16 EKKVIFPFTRIHNPMLVEAYLENGVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRICG 75 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C++ HA+++ A E AL + VP N RN+I+ + +HI HFY +S D+ Sbjct: 76 ICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDI 135 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 P HL F +N+ Sbjct: 136 PPFTP-------------HLEGDIRFNTEENQR--------------------------- 155 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 HY +A+E RDA+ + GGK PH + GG ++ D ++ Sbjct: 156 ----MTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHVDAD--------KINR 203 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 + ++ ++ +F+ D + YPE++ GKG N+LSV F +G LFP G Sbjct: 204 FRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKGNGNFLSVGGF--TQPDGGTLFPHG 261 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 + ++P D+ L I E +WYK P PW+GTT P D G Y Sbjct: 262 VVLE---DKHQPF----DDRL---ILEEVTTAWYKPTPPAHPWQGTTEP--DKNQPQG-Y 308 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 +WVK+P + G +EVGPLA ++ +K+ G + TL Sbjct: 309 TWVKAPRYQGHALEVGPLARAVIA------------------KEKIIG--------YGTL 342 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 GR R + ++ + L+ G T K + G+G++EA RG L Sbjct: 343 GRHWSRVMETKKIAEAAMIWLERLV----PGAETLNTKVQQESG---MGIGYVEAMRGTL 395 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 HW+ I+ G + +YQ + PSTWN R+ + E S+ G + P E R I S Sbjct: 396 GHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKHPELK-EAGRVIRS 454 Query: 543 FDPCMACAVHVVDADGNEVVSVKV 566 FDPC +C+VH++D + + ++V Sbjct: 455 FDPCFSCSVHLIDGEQLRTLDIRV 478 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 192/644 (29%), Positives = 273/644 (42%), Gaps = 172/644 (26%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN--------GVVSKAWASGTMWRGMEEIVKNRDPRDAW 54 RI IDPVTRIEGHLR++ E VV +A+ SGT++RG E I++ RDPRDAW Sbjct: 5 SRIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRDAW 64 Query: 55 MIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL 114 +I QRICGVC HA +S++A E+A N+ A IRN++ A+ +DHI+H Y Sbjct: 65 IITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSY----- 119 Query: 115 DWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH 174 ++ +LG+ + Sbjct: 120 -------------------------------------------ILLGPELGVVCK----Y 132 Query: 175 PAMKLPPEVNLIAVAH------YLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN 228 P M +PP + V+ Y+ ALE QR AN +VA+ GGK PH Q+ GG+A Sbjct: 133 PPM-VPPALGKEGVSKLGIGSSYVGALEIQRKANEIVAIWGGKFPHHQSEYPGGMAVRPT 191 Query: 229 LDGLGVLNLERLMYI-----KSFIDKLSDFVEQVYKVDTAVIAAF---YPEWLTRGKGAV 280 D + +L R+ I ++ + + +E KV AV + + G Sbjct: 192 EDRIAS-SLARMFEIWRWVAETMVKDFYNLLEANEKVGEAVSSLLDINFRGLQDVGASTG 250 Query: 281 NYLSVPEFP-------------TDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGI 327 N+LS FP + SK S L G + S +P+ I I Sbjct: 251 NFLSYGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDG----SSKPLD-------ISKI 299 Query: 328 QESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKL 387 E ++SWY +E+ P + P D + YSW+K+P + GK EVGPLA ML Sbjct: 300 AEYVRYSWYDNESGLNP-KDEDAPKPDK-NKSEAYSWLKAPRYDGKVYEVGPLARML--- 354 Query: 388 AAGRESTQNKLNEIVAIYQKLTGNT---LEVAQLHSTLGRIIGRTVHCCELQDILQNQ-- 442 T+ K + I +TG E L+ G +I R L IL +Q Sbjct: 355 --NTYGTRWK----IPIRNPVTGEDHGYFEYEVLNPK-GSVIDRLAARVALT-ILTSQKV 406 Query: 443 YSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPS 502 + L+ + N+P GE G G +APRG L H++ +KD I+NYQ VVPS Sbjct: 407 FEWLLELKSYTNQKVTNYRNVPKEGE--GFGLWDAPRGGLLHYIKVKDHKIANYQCVVPS 464 Query: 503 TWNSGPRNFNDDVGPYEQSLVGTPVAD-----------PNKPLEV--------------- 536 TWN PR+ GP E +L GT + + P K +++ Sbjct: 465 TWNLSPRDDFGQPGPVETALEGTWLPNLSVPEICNAIYPEKDVDLSALGLGAMSWGDALA 524 Query: 537 --------------------------VRTIHSFDPCMACAVHVV 554 + + SFDPC+ACAVHVV Sbjct: 525 AALTPLGLAELNIERLNGQIYNTSLTLMVVRSFDPCIACAVHVV 568 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 149/556 (26%), Positives = 250/556 (44%), Gaps = 106/556 (19%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I IDPVTRI G L+I+ ++EN + A ++G+ +RG E++ + R P D + RICG+ Sbjct: 3 KIVIDPVTRISGLLKIEVDVENNKIVDAKSTGSQFRGFEKMFQGRPPLDIIRLAPRICGI 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA- 122 C+T+HA+++ A E+ALNI N + IR+I +H+ Y + D+V IT++ Sbjct: 63 CSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASN 122 Query: 123 -LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L D T PE+ TK N+ Sbjct: 123 PLYKDGTDKE--------LDYRLPEDITKKINE--------------------------- 147 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 YL+A++ R+ +R +A+L GK PH + VGG++ I+ V E + Sbjct: 148 --------DYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYID-----VPEKESVK 194 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 Y I + +F+E D +IA +Y ++ GKG N + + + P Sbjct: 195 YT---ITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLY------SDYKAPI 245 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 Y E + + I + + I E+ K+S+ ++ P + + D Sbjct: 246 KYTEASAM-----INGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDA- 299 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSWV + + ++E GPLA ++ Y+ +++ + Sbjct: 300 YSWVDAARYKNYSMEGGPLARQILN----------------GYYEN------KISAMDRI 337 Query: 422 LGRIIGRTVHCCE----LQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 L R++ +V CE L D+++ +G+ + P+ + G+G + A Sbjct: 338 LARVL-ESVKICESIIGLIDLMK---------LGQAVQEEWQIPS-----KVNGIGLIGA 382 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW+ I++ +SNY + PS WN P + N+ GP E +L+GT + D P+E+ Sbjct: 383 PRGALGHWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTEINDMKNPVEIG 442 Query: 538 RTIHSFDPCMACAVHV 553 R + SFDPC CA HV Sbjct: 443 RIVRSFDPCSNCAAHV 458 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 167/588 (28%), Positives = 243/588 (41%), Gaps = 137/588 (23%) Query: 10 VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHA 69 + R+EG L I +E+GVV A +GTM+RG E+I+ R PRDA +I R+CG+C T H Sbjct: 10 LNRVEGDLSIQVTLEDGVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCGICGTAHL 69 Query: 70 LSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTK 129 + V A E A N VP NA IRN+ L A + + + A D P Sbjct: 70 YAGVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPD--------LCHPRY 121 Query: 130 ASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 A ++L E + K + Sbjct: 122 AGDVLF----------EPMMRAFEPFKGDI------------------------------ 141 Query: 190 HYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDK 249 Y + L R +VA GG+ PH + GGV P + RL+ +S ID+ Sbjct: 142 -YRETLAMTRRVLEIVAHFGGQWPHSSYMLPGGVVTPPDT--------RRLIACRSVIDQ 192 Query: 250 LSDFVEQV--------YKVDTAVIAAFYPEWLTR-----------------------GKG 278 L + EQ + + A F EWL R G G Sbjct: 193 LQRWYEQRIIGAGLDEWMALGSADALF--EWLERPGPANAALGLITRFLRSQGMHRLGIG 250 Query: 279 AVNYLSVPEFPTDSKNG----SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS 334 + +S + + G + L PGG+ ++D +P+ D L+ E +HS Sbjct: 251 TPHMISFGAWCDPQRWGPPYDAHLLPGGFY-DSDSGQVQPL----DPSLVT---EHVRHS 302 Query: 335 WYKD-EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRES 393 W+K E + P+EG T+P Y D +YSW K+P + G+ V+ GPLA +L+ Sbjct: 303 WFKPYEGGRHPYEGETVPDYQ--PDSDRYSWAKAPRYGGRVVQTGPLAELLI-------- 352 Query: 394 TQNKLNEIVAIYQKLTGNTLEVAQLHSTLG-----RIIGRTVHCCELQDILQNQYSALIT 448 G V LH+T G R R + L Sbjct: 353 ----------------GGDALVRDLHATEGAGAWLRQFSRVRRIGFELRQARRMLDELGA 396 Query: 449 NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP 508 ++G+ FV P + +G G + A RG L HW+ I++G+I YQ V P+ WN+ P Sbjct: 397 HLGE---PHFVPPAPGTEVDGQGCGLVMAARGALGHWVRIENGVIQKYQIVTPTAWNASP 453 Query: 509 RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 R+ + G +E SLVG V DP+ P+E+ I S DPC+ C VH VD+ Sbjct: 454 RDSDGVPGHWESSLVGLKVQDPDDPIEIGHLIRSHDPCLVCTVHFVDS 501 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 173/586 (29%), Positives = 263/586 (44%), Gaps = 129/586 (22%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+RI + + R+EG L I+ EI+NG+V+ A GTM+RG E+I+ R P DA I RI Sbjct: 1 MSRRIKLQ-LNRVEGDLEIELEIKNGIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T H +SV A ES NI P NA +RNI L ++ Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICL----------------------LS 97 Query: 121 SALQADPTKASEMLK-GVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 +Q+D + M + ++ ++ + K +D+ G+L Sbjct: 98 EEIQSDCRQTFLMFTPDLCHSSYSTLNDYQSIVAKFQDM--QGEL--------------- 140 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN----LDGLGVL 235 Y A+ RD +VA+ GG+ PH + GGV + + ++ L L Sbjct: 141 -----------YQDAIRFSRDIIEIVAIFGGQWPHSSYMVPGGVTSLPDRRKVINSLAQL 189 Query: 236 N-----LERLMYIKSFID--------KLSDFVEQVYKVDTAVIAAFYPEWLTRGKGA--- 279 E + S D +L++F Q A++ F + G+ Sbjct: 190 QRYTQWFEHKILGTSLADWSRITSLAELNNFT-QSSDSAIAILHRFCRDMGLDSVGSGSE 248 Query: 280 --VNYLSV--PEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW 335 ++Y S+ PE P + G Y N L + P+ DE I E SW Sbjct: 249 KMISYGSLIDPENPQERIRSD----GTY--NYKLKKHAPL----DE---SKITEDITSSW 295 Query: 336 YKDEAPQA--PWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRES 393 Y DE+ A P +G T P YD D KYSW K+P + ++ GPLA +LA ++ Sbjct: 296 YHDESQTARHPMQGLTQPKYD--PDSEKYSWAKAPRYDKDVIQTGPLA----QLAVAKDP 349 Query: 394 TQNKLNEIVAIYQKLTGN-----TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALIT 448 I L N T + A++H +I IL++Q S+L+ Sbjct: 350 L---------ILDMLAQNGSSTWTRQFARIHRQASSLI-----------ILKDQLSSLLE 389 Query: 449 NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP 508 + D T + + GE GVG +EA RG L HW+ I+DG I N+Q + P+ WN+ P Sbjct: 390 CL---DAPTMIHCPL-EDGE--GVGMIEAARGSLGHWLKIEDGKIKNFQVITPTAWNASP 443 Query: 509 RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 R+ N G EQSL+G P+ D ++P+E+ + S DPC+ C VH++ Sbjct: 444 RDINQQPGHIEQSLIGLPMPDLDEPIEIGHVVRSHDPCLVCTVHLL 489 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 180/619 (29%), Positives = 280/619 (45%), Gaps = 99/619 (15%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T+DP+TRIEGH RI+ E+ E GV++ A ++G RG E +++++DPRDA ++ QRICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD----- 115 VC +H +++ A + + +VP++ +RN+ A + H H Y L D Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDLANPA 122 Query: 116 -------WVDITSA----LQADPTKASEMLKGVS----TWHLNSPEEFTKVQNKIKDLVA 160 + D+ +A LQ L G S + +L S EF ++ I L+A Sbjct: 123 YRDILAKYGDVGNAVWKELQGRFAPLIYQLDGTSYPAGSSYLGSIVEFRRLHEAIS-LIA 181 Query: 161 SGQLGIFANGYWGHPAMK-LPPEVNLIAVAHYLQALE-CQRDANRVVALLGGKTPHIQNL 218 S HP ++ + V VA Q L + V A G +P I Sbjct: 182 SKM---------PHPVLQHVGGVVYSPTVADIGQILSYITKTMEFVEAFTLGVSPDIWIE 232 Query: 219 AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLT---- 274 ++P + +L+ L+ KS +K DF D + AAF E + Sbjct: 233 NTYRASSPQKAANFVLNHLQELLN-KSLDNK--DFSHSAGWGDVPLFAAFGSELIGEKLL 289 Query: 275 --------------RGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSS-YRPITSHS 319 + G + +LS F +NG+ P ++ +SS Y Sbjct: 290 GLPISMKMDLAGTYKDPGKIGFLSYGVF-FKPENGNGYDPTSPADSRVISSGYMNGYFKL 348 Query: 320 DEYLIKGIQESAKHSWYKDEAP-QAPWEGTTIPAYDGWSDD------GKYSWVKSPTFYG 372 +++ K I ES HS+Y D+ + PW G T+P + + D +YSW K+P + G Sbjct: 349 EKFDYKKISESINHSFYIDDVKDRPPWNGVTVPEGNPENIDYTKGSKSRYSWTKAPHYDG 408 Query: 373 KTVEVGPLANMLV---KLAAGREST-QNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGR 428 EVGPLA M++ L G T Q+ V Y ++ E+ + L + + Sbjct: 409 IPCEVGPLARMIIMGEPLVTGLVKTFQDNGYYPVNNYTRMIARMQEILVVVPELTKWL-- 466 Query: 429 TVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 QDI A+ T++ +T G+G EAPRG L HW+ Sbjct: 467 ------TQDIQAGGKVAVHTDLSMAKSST-------------GMGLWEAPRGALGHWVAT 507 Query: 489 -KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA--------DPNKPLEVVRT 539 D +++ YQAVVPSTWN PRN + P EQ+L+GT ++ D + PL ++ T Sbjct: 508 GPDSMVTLYQAVVPSTWNLAPRNSQEIPSPVEQALIGTKISAAENALGVDYSNPLGILHT 567 Query: 540 IHSFDPCMACAVHVVDADG 558 S+DPC+ACAVH +D G Sbjct: 568 ARSYDPCLACAVHTIDKTG 586 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 161/582 (27%), Positives = 242/582 (41%), Gaps = 111/582 (19%) Query: 1 MSQRITID-PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+ R +D PV R+EG L + EI +G+V AW++GTM+RG E ++ R D ++ R Sbjct: 1 MAVRKILDVPVNRVEGDLELRLEIADGMVVDAWSAGTMFRGFERLLIGRGALDGLVVTPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C+TTH +++ +A ++ VP N +RN+ L A + + +D+ + Sbjct: 61 ICGICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFAN- 119 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A +A P E ++ + + E + + +++A G W H + + Sbjct: 120 -PAYRAQPLY-DEAVRRYAPLAGEAVAEAVRETKHVVEIIA------IIGGQWPHSSFMV 171 Query: 180 P-------PEVNLIAVAHYLQA---------LECQRDANRVVALLGGKTPHIQNLAVGGV 223 P P L+ H L L C D R V Sbjct: 172 PGGLSYAPPVAELLQCRHVLDGFRGWYERRILGCSLDRWRAV------------------ 213 Query: 224 ANPINLDGLGVLNL---ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR-GKGA 279 D L L+L E + S + L F + L R G G Sbjct: 214 ------DSLEALDLWLEESAAHRDSDVGFLLRFGRTIG--------------LDRLGGGH 253 Query: 280 VNYLSVP--EFPTDSKN---GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS 334 N+LS + P ++ G L P G+ A + + P I E S Sbjct: 254 GNFLSCGSLDLPAETAARGVGGHLVPSGFARGAVVEGFDPAA----------IAEHVAAS 303 Query: 335 WYKD-EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRES 393 WY E + P EG T P Y + +YSWVK+ + G E GP A +V AG Sbjct: 304 WYAAYEGGRHPAEGETEP-YASGEEGRRYSWVKAARYLGTPAETGPFAERIV---AGDPL 359 Query: 394 TQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG 453 + L Q + L R + R L + +I + G Sbjct: 360 FTDLLRR----------------QGPNALARELARLTRPATLLPAMALWLGEVIAS---G 400 Query: 454 DHTTFVKPN-IPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFN 512 H + P IP + G+G ++A RG L HW+ IKDG I YQ + P+ WN PR+ Sbjct: 401 GHDIYADPGPIP---DGAGIGMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSG 457 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 GP+E++L+GTPVAD + P+EV I SFDPC+ C+VH V Sbjct: 458 GVRGPWEEALIGTPVADADNPVEVGHVIRSFDPCLVCSVHTV 499 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 170/613 (27%), Positives = 261/613 (42%), Gaps = 96/613 (15%) Query: 3 QRITIDPVTRIEGHLRIDC--EIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 + I DPVTR+ G L ++E V + T++RG E I+K RDPRDA I R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTNSMATLFRGYEVILKGRDPRDAAYISSRA 110 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC HA ++ A E AL I P +RNI+LA +DH +H + L+ D+ Sbjct: 111 CGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDY---- 166 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SE L + L TK +NK +GY + + Sbjct: 167 ----------SEELVRETNPELIDKAATTKAKNKD------------VHGY--DTVLDIM 202 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N + YL+AL R A L+GGK PH Q++ GG++ +N L Sbjct: 203 KDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNASMLNE------ 256 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFY---PEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + S + K D+ ++V + V F PE+ G + G + Sbjct: 257 --VYSRLIKFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDT---------GVW 305 Query: 298 LFPGGY---IENAD------------LSSYRPITSHSDEYLIKGIQESAKHSWYKD---- 338 P Y EN D L +T+ E L G++E +HS+Y+ Sbjct: 306 DRPDHYDAKFENCDTWGEARWSTPGVLVDGEVVTTKLTE-LNAGMEEFVEHSYYEKWDGH 364 Query: 339 ----------EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLA 388 +P PW TIP S +YSW +PT+ +E G M + A Sbjct: 365 RFKEDPNGMPLSPNHPWNKETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMT-A 423 Query: 389 AGRESTQNKLNEIVAIYQK-------LTGNTLE--VAQLHSTLGRIIGRTVHCCELQDIL 439 +++ +K E K L TLE + + + R R + Sbjct: 424 KAQKAPASKFLENTGTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVA 483 Query: 440 QNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAV 499 + + I GD V IP G G G A RG L+H ++I++G+I NYQ + Sbjct: 484 MENWMMAMDLIKNGDTKVSVPYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIENYQII 543 Query: 500 VPSTWNSGPRNFNDDVGPYEQSLVGTPVADP-NKP-----LEVVRTIHSFDPCMACAVHV 553 PST N+ PR ++GPYE++++ TP+ + +KP ++++R I SFDPCM C H+ Sbjct: 544 TPSTLNAAPRTPWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCTTHI 603 Query: 554 VDADGNEVVSVKV 566 + D + +V+ +V Sbjct: 604 MAKDSDHMVTREV 616 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 162/587 (27%), Positives = 254/587 (43%), Gaps = 86/587 (14%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + I P+ R+EG L + I +GVV+ AW +M+RG E I+K +DP+ ++ RICG+C Sbjct: 16 LRISPLGRVEGDLDLRVTIRDGVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPRICGIC 75 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 +H +V A ++A ++P NA IRNI A T FY L A +D+T+ Sbjct: 76 GGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFA---IDLTNKKY 132 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV- 183 A + E ++ + + S E + NK ++ A IF G W H + +P V Sbjct: 133 AHLPEYDEAVRRFAPFVGTSYEHGVTLSNKPVEIYA-----IFG-GQWPHSSFMIPGGVM 186 Query: 184 ---NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 L V + LE +D LG +++R Sbjct: 187 CAPTLADVTRAIAILEYWKDEWLEKKWLG-------------------------CSVDRW 221 Query: 241 MYIKSFIDKLSDF--VEQVYKVDTAVIAAF-YPEWLTR-GKGAVNYLSV-----PEF--- 288 + KS+ D + E+ Y D F L + G G NYL+ PE Sbjct: 222 LQNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYGAGWNNYLATGTYFHPELYAR 281 Query: 289 PT-DSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEG 347 PT + +N + + G N + ++E HS+Y+ P+EG Sbjct: 282 PTIEGRNAALIARSGVYVNGQFYDFDQAQ----------VREDVSHSFYEGNHVLHPFEG 331 Query: 348 TTIPA-YDGWSDDGKYSWVKSPTFY-----GKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 T P + GKY+W K+P + +E GPLA ++ G Q+ Sbjct: 332 RTEPIDPEVGRRQGKYTWAKAPRYLIPGVGSHPLEAGPLARQVIAGRPGAADWQD----- 386 Query: 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKP 461 Y L + + S L R++ R + +++ + + ++KP Sbjct: 387 ---YDPLFLDAVTTVG-PSVLVRVMARMHEAPKYYKLVRKWLDQINLH-----EKFYIKP 437 Query: 462 N-IPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 +P E +G G EA RG LS W+V+KDG I NYQ + P+ WN GPR+ + GP EQ Sbjct: 438 KELP---EGRGFGSTEAARGSLSDWIVLKDGKIENYQVITPTAWNIGPRDSREVNGPMEQ 494 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDAD-GNEVVSVKV 566 + +G P+ADPN P+E+ S+D C+ C VH D G E+ ++ Sbjct: 495 AFLGAPIADPNDPVELGHVARSYDSCLVCTVHAYDEKTGKELARFRI 541 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 177/643 (27%), Positives = 268/643 (41%), Gaps = 163/643 (25%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RITIDPVTR+ LR+ E+ +G ++ A +SG ++RG+E+++ R P DA QRICG+ Sbjct: 2 RITIDPVTRLSSGLRVTAELTDGAITSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICGM 61 Query: 64 CTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 C+ +HA +SV A ESA +P +A +RNI+ +H+ H Y D D Sbjct: 62 CSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPDLAD--- 118 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + D +S + G W + K + V+ GQ Sbjct: 119 PVYGDALNSSSL--GNLLWQ----------ELKERYAVSGGQ------------------ 148 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA-NPI------------N 228 Y +AL C R+ R +LGG++P + GGV P N Sbjct: 149 --------AYGEALRCIREIGRAEGVLGGRSPCSPAIVPGGVTVRPARGDIGALETCLEN 200 Query: 229 LDGLGVLNLERLMYIKSFIDKLSD--------FVEQVYKVDTA---------VIAAFYPE 271 +DG L M I ++ D ++E + D + + F+ Sbjct: 201 IDGFLQKRLVGAMTIGEWLANTHDQDAGFGYDYIEHLPMGDLSASKGWGDLPLFMMFFSR 260 Query: 272 WLTRGKGAVNYLSVPEF---------PTDSK----------------------------N 294 R + LS+P + P D + + Sbjct: 261 MFAR-----DVLSLPAYIGLDDAGGYPLDDQLIGFLSYGSFYRVRDESGRLKDGYGTVED 315 Query: 295 GSFLFPGGY----IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 G+F P G+ ++N L++ R D LI ++ + + ++ +AP +G T+ Sbjct: 316 GAFEMPAGFTPGGMQNIYLAADR-----VDPNLIVEHVAASFYDYSEERLSEAPLDGETV 370 Query: 351 PAYDGWS---DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL---NEIVAI 404 PA S D +YS++K+P + EVGPLA + + +L N V Sbjct: 371 PAGRASSIELDGARYSFIKAPRYGRVPCEVGPLARQINSRESLIIDAMRRLYSRNMSVTN 430 Query: 405 YQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDIL-----QNQYSALITNIGKGDHTTFV 459 Y + T +A++ TL +I R +H E D L + +Y ++ V Sbjct: 431 YPMASVYTRTMARMQETL--LISRMLH--EWLDDLHVSDERQKYCVPVS----------V 476 Query: 460 KPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 KPN G G +EAPRG L HW+ I KD ISNYQ V P+TWN+ PR GP Sbjct: 477 KPN------RTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTWNASPRCSEQKSGPM 530 Query: 519 EQSLVG---TPV----ADPNKPLEVVRTIHSFDPCMACAVHVV 554 E +L+G TP + P+ + I SFDPC ACAVH V Sbjct: 531 ELALLGCSTTPSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 253/576 (43%), Gaps = 121/576 (21%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI P R+EG L I +I V A+ + ++RG E+I++ +DPRDA IV RIC Sbjct: 5 TRRIIAGPFNRVEGDLEIRLDINGSAVRAAYVNSPLFRGFEQILEGKDPRDALTIVPRIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ + ++++ A +A I P N + I II AA DH+ HF+ D+ Sbjct: 65 GICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADFARAIY 124 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEF-TKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A + +W+ + E+F K + ++D Sbjct: 125 AGE--------------SWYGMASEQFRAKNGSSVQD----------------------- 147 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVAN-PINLDGLGVLNLER 239 A+ + ++ LL GK PH ++ GG P D + +L + R Sbjct: 148 -------------AMNARASLLHIMGLLAGKWPHTLSVQPGGATKAPDQRDRVRLLAIIR 194 Query: 240 LMYIKSFIDK--LSDFVEQVYKVDT-AVIAAFYPE---------WLT---------RGKG 278 K +I+K + VE++ +D+ + A++ E +LT G G Sbjct: 195 --QFKDWIEKSIFAAPVERILAIDSLESLRAYHAEAPQHGSLRLFLTICDTLELGSMGLG 252 Query: 279 AVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD 338 ++S +P D G L P G N + P+ D LI E +W Sbjct: 253 PKRFMSYGAYPMD---GRHLLPPGIWLNGKIM---PV----DTGLIA---EDLTSAWMNG 299 Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 E P+EG T+P D +G YSW K+P G+TVEVG A ML+ A Q L Sbjct: 300 ETAH-PFEGRTLP--DETMANG-YSWCKAPRMAGQTVEVGAFARMLI---ADHPLAQGLL 352 Query: 399 NEIVA-IYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 + A + ++ G E+A TV E Q++A +I G+ Sbjct: 353 QDGAANVRARVVGRLFEIAS-----------TVLAME-------QWAA---DIVPGE-PA 390 Query: 458 FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 V IP + + +G+ EA RG L HW+V++ G I++YQ + P+TWN PR+ GP Sbjct: 391 MVHGRIPQSAKVEGL--TEAARGSLGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGP 448 Query: 518 YEQSLVGTPVADPNK-PLEVVRTIHSFDPCMACAVH 552 EQ+L G PV + P+ V + SFDPCM C VH Sbjct: 449 VEQALRGAPVRHGEETPVSVQHIVRSFDPCMVCTVH 484 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 166/576 (28%), Positives = 254/576 (44%), Gaps = 70/576 (12%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + + P+ R+EG L + +E+GVV++AW M+RG E I+K +DP+ ++ RICG+C Sbjct: 12 LHVSPLGRVEGDLDLRVTVEDGVVTQAWTEAGMFRGFEMILKGKDPQAGLIVTPRICGIC 71 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 +H S A + A ++P NA +RNI A T FY L A +D+T+ Sbjct: 72 GGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALFA---IDLTNRRY 128 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVN 184 A E ++ + S E + K ++ A IF G W H + +P V Sbjct: 129 AKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYA-----IFG-GQWPHSSFMIPGGV- 181 Query: 185 LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 D R +A+L + H N + LG +++R + IK Sbjct: 182 --------MCGPTLSDVTRSIAILE-EFRH----------NWLESRFLGC-SVDRWLEIK 221 Query: 245 SFIDKLS--DFVEQVYKVDTAVIAAFYPE-WLTR-GKGAVNYLSVPEFPTDSKNGSFLFP 300 ++ D L+ D E + D F E L R G G NYL++ + K Sbjct: 222 TWEDVLAWVDENESQHNSDLGFFLRFGLEIGLDRFGAGCGNYLAMGTYLHHEKYNRPTIE 281 Query: 301 GGYIENADLSSYRPITSHSDEYLIKG--IQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 G NA L I + Y ++E S+Y+ P+EG T P + Sbjct: 282 G---RNAALIQRSGIYAGGKHYEFDQARVREDHTFSFYQGSGLLHPFEGRTEPIDPADAK 338 Query: 359 -DGKYSWVKSPTF----YGKT-VEVGPLANMLVKLAAGRE--STQNKLNEIVAIYQKLTG 410 GKY+W K+P + G +EVGPLA +V G E ++I+A Sbjct: 339 RQGKYTWAKAPRYDVDGLGSVPLEVGPLARQVVAGKPGEEWQDVDPLFSDIIA------- 391 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD-HTTFVKPNIPATGEF 469 + S L R++ R +L Y + +G+ D H F P EF Sbjct: 392 -----KKGPSVLVRVLARLHEEAKL-------YKNVREWLGELDLHDRFYIK--PVEHEF 437 Query: 470 -KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 +G G EA RG L+ W+V+++G I+NYQ V P+ WN GPR+ + GP EQ+ +GT + Sbjct: 438 GRGFGATEAARGALADWIVLENGKIANYQVVTPTAWNIGPRDSRNVNGPMEQAYLGTTIH 497 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 DP P+E+ SFD C+ C VH D+ + + V Sbjct: 498 DPGDPVELGHVARSFDSCLVCTVHAYDSKTGKEIGV 533 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 148/572 (25%), Positives = 250/572 (43%), Gaps = 124/572 (21%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M ++IT PVTR+ G L ++ ++ G + A GTM+RG E I++ R DA + QRI Sbjct: 1 MVKKITFSPVTRLSGLLSVEIVVDRGKIVNARTRGTMFRGYEWIMRGRKVTDAVYMTQRI 60 Query: 61 CGVCTTTH-ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 CG+C+ H A+ S E NI + NAQY+RNI+ AA +HI HFY D+V + Sbjct: 61 CGICSLAHGAVGSYLLDELYGNI-ISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKM 119 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 PE+ + + DL +L Sbjct: 120 -------------------------PEKPPFLGQDLNDL-------------------RL 135 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 E N V +Y +A++ +++++++AL GGK P+ + GGV D + Sbjct: 136 NREDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHGGVTVAPTAD--------K 187 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + K+ I+ + FV+ DT +I+ Y ++ G + +S FP +N +L+ Sbjct: 188 INQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGVTPLRLISFGLFPFGPQNDDYLW 247 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 P G I N + + ++ I+E +S+Y +A EG + ++ + + Sbjct: 248 PPGVIINNEFELPQ----------VEFIEEQVPYSYY-----EANDEGENV--FNQYPEP 290 Query: 360 G-----KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 YS++K+ + G+ E GP A +++ G+ Sbjct: 291 APFKPEAYSYIKTVLYKGQHFETGPYARGVIR-----------------------GDYRG 327 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF----- 469 A ST+ RI+ R++ +L ++ + T ++P P + Sbjct: 328 RA---STMDRIVARSLEALKLAGFIR-------------EWLTRLEPGPPPLNQNEEPVK 371 Query: 470 -KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 + V A RG L H +I+ + +Y + P+TWN PR+ N + GP E++L+GT + Sbjct: 372 DRAVATTGAMRGALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALIGTEIP 431 Query: 529 DPNKPLEVV--RTIHSFDPCMACAVHVVDADG 558 LE + R I SFDPC++C HV DG Sbjct: 432 G-GAMLETIVGRIIRSFDPCISCGTHVYSIDG 462 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 155/578 (26%), Positives = 243/578 (42%), Gaps = 123/578 (21%) Query: 9 PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH 68 P+ R+EG L I IE+G +++A +SGTM+RG E ++ R D +I RICG+C+ +H Sbjct: 13 PLNRVEGDLEIQAAIEDGCITEARSSGTMYRGFENMMTGRGTLDGLVITPRICGICSLSH 72 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPT 128 ++V A E P NA+ +RN+ L + LQ+D Sbjct: 73 LTAAVEALEDISGTTPPDNARRLRNLAL----------------------MVEMLQSDIR 110 Query: 129 KASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL-IA 187 ++ M + D G Y HP L E ++ Sbjct: 111 QSILMF--------------------MVDFTNEG-------AYASHPLSSLLMERYAPLS 143 Query: 188 VAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSF- 246 +Q+++ R VVA++GG+ PH + GGV + + L L M I++F Sbjct: 144 GTSAIQSIQETRRLLEVVAIIGGQWPHTSFMVPGGVTSSLGTPEL----LRCCMIIENFQ 199 Query: 247 --------------------IDKLSDFVEQVYKVDTAVIAAF----YPEWL-TRGKGAVN 281 + D++E++ + F Y L T G+G Sbjct: 200 SWYEKNVLGCSISRWHQVDSAQAMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQGPDG 259 Query: 282 YLSVPEFP------TDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW 335 +L P + G F+ P G+ + + ++ P D I S KH+ Sbjct: 260 FLCYGGLPLPEHTEVKGQQGQFI-PAGFARHGSIQAFDPANIAED---ISQCPYSQKHTS 315 Query: 336 YKDEAPQAPWEGTTIPAYDGWS-DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGREST 394 PW+ +T P D ++ + YSW+K+P + G VE GPLA MLV+ R+ Sbjct: 316 VH------PWDSSTNP--DPYAPRENSYSWIKAPRYNGHAVETGPLAEMLVR----RDPL 363 Query: 395 QNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD 454 L + Q S L R + R L + L +N +G Sbjct: 364 FTDLIQ---------------RQGSSVLSRQLARLTRPARLIPAMLAWLRELSSNP-QGK 407 Query: 455 HTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD 514 VK IP + +G G ++A RG L HW+ I D I +YQ + PSTWN PR+ +++ Sbjct: 408 FYHRVK-KIP---DGQGAGLIQAVRGGLGHWVQIVDQKIEHYQIITPSTWNGSPRDGDNN 463 Query: 515 VGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 G +E++L GT + +P P+E + SFDPC+ CAVH Sbjct: 464 PGAWEKALEGTFIKNPENPVEAGHVVRSFDPCLVCAVH 501 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 169/648 (26%), Positives = 261/648 (40%), Gaps = 176/648 (27%) Query: 4 RITIDPVTRIEGHLRIDCEIEN--------GVVSKAWASGTMWRGMEEIVKNRDPRDAWM 55 R+ +DP+TRIEGHL + E + VV KA++ ++RG E I++ RDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 I QRICGVC H ++++A + A ++ A IRNI+ AA+ +DH++H Y Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTY------ 116 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP 175 L+ ++G+ +P Sbjct: 117 ------------------------------------------LLVGPEIGVVCK----YP 130 Query: 176 AMKLPPEVNLIAV------AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINL 229 M +PP + + + Y+Q ++ QR AN +VAL GGK PH GGV Sbjct: 131 PM-VPPALGKEGIRKLGLGSSYVQCVDIQRKANEIVALWGGKFPHHMCEYPGGVTVKPTG 189 Query: 230 DGLGV--------------LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR 275 D + + L+ L+ IK + +S+ + ++ ++ A W Sbjct: 190 DRIAQTLAKATELWEWCAHVALKDLIAIKERNEIVSERLSELLGIEHRAFADIGASW--- 246 Query: 276 GKGAVNYLSVPEFP--------TDSKNG------SFLFPGGYIENADLSSYRPITSHSDE 321 NYLS FP +++G S + G +N +L + D+ Sbjct: 247 ----GNYLSYGIFPDPENYDDWVKAQDGQPSFRKSAVIYAGSWQNGELKPF-----ERDK 297 Query: 322 YLIKGIQESAKHSWYKDE-APQAPWEGTTIPAYDGWSDD-GKYSWVKSPTFYGKTVEVGP 379 I E K+S YKDE + PW+ + W D Y+W+K+P + GK EVGP Sbjct: 298 -----IVEYVKYSRYKDEISGMKPWD-VEMTNDIVWKDKPNAYAWMKAPRYDGKVHEVGP 351 Query: 380 LANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA-QLHSTLGRIIGRTVHCCELQDI 438 LA M+V L + +TG T+ V ++ + G +I R + Sbjct: 352 LARMIVTYG---------LRWKFDVTNPITGETVSVDWEVMNPKGSVIDRVASRVVQALL 402 Query: 439 LQNQYSALITNIGK-GDHTTFVKPNIP----ATGEFKGVGFLEAPRGMLSHWMVIKDGII 493 + + V +IP E +G G EAPRG L H+ IK+ +I Sbjct: 403 FATKIMEWAVQLKDYASEYPIVSKDIPDYKYVPNEGEGWGLWEAPRGALLHYTKIKNKVI 462 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT---------------------------- 525 +NY VVPSTWN GPR+ + GP E++L G Sbjct: 463 ANYACVVPSTWNLGPRDDFGNPGPVEKALEGCWLPKNLSVPDVCNALWPEEDVLGMKWGD 522 Query: 526 PVADPNKPLEVVR------------------TIHSFDPCMACAVHVVD 555 +A PL + + SFDPC+AC VH ++ Sbjct: 523 ALAKAIAPLGLAELNLEPSNGAKYNTSLALAIVRSFDPCIACGVHTIE 570 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 151/563 (26%), Positives = 235/563 (41%), Gaps = 93/563 (16%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++RIT+ P R+EG L + ++++GVV A + ++RG E+I++ R DA +V RI Sbjct: 1 MTRRITVGPFNRVEGDLEVRLDLDDGVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + ++++V A +A + N N+ AA DH+ HFY D+ Sbjct: 61 CGICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDF---- 116 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A + G WH F VQ G A + Sbjct: 117 ---------ARDAYAG-RPWHPEIAARFKAVQ--------------------GSAAQAML 146 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 P A A LQ ++ LL GK PH GG I+L G V L + Sbjct: 147 P-----ARARLLQ----------IMGLLAGKWPHSLAFQPGGTTCAIDL-GERVQLLSII 190 Query: 241 MYIKSFIDK--LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + F+++ D ++ V +D+ +AA RG +L+V + + G Sbjct: 191 GDFRDFLERTMFGDSLDNVLAIDS--VAALEAWRDGRGGDFARFLAVADDLALHRLGRIA 248 Query: 299 FP----GGY-IENADLSS---YRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 P G Y E+A L + P+++ + I E +W +D + +P E T Sbjct: 249 LPLMSFGAYHGEDAPLFAAGVLDPLSAARTSFDPAAITEDVARAWMRDTS-LSPLEADTD 307 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P D YSW K+P G EVG LA + + + VA + Sbjct: 308 PDAD---KPAGYSWCKAPRLAGGPAEVGALARQAI-------DGDPLIRDCVARFGSCV- 356 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 T VA+L T + +H Q L + + +G+ + Sbjct: 357 TTRVVARLRETA--RLALAMHQWARQLDLAEPF------LERGERGR----------DGT 398 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G+G +EA RG L HW+ ++ I YQ + P++WN PR+ GP EQ+LVGTPV D Sbjct: 399 GIGLVEAARGSLGHWIELRGDSIRRYQIIAPTSWNFSPRDRGGVPGPLEQALVGTPVGDA 458 Query: 531 N-KPLEVVRTIHSFDPCMACAVH 552 + + + + SFDPCM C H Sbjct: 459 GARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 162/602 (26%), Positives = 263/602 (43%), Gaps = 125/602 (20%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++++ I P+ R+EG L + E V KA+ ++RG+E I+K + P D+ +I RI Sbjct: 1 MNEKV-ISPLNRVEGDLDLKVVFEGKKVVKAFPMSRLFRGIEIILKGKFPMDSLVITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C +H LS+ +A E A VP NA +RN++ A + + H Y + +D V++ Sbjct: 60 CGICGGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNL- 118 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 K +M G++ ++ Sbjct: 119 --------KYEKM------------------------------------GFYRDIVLRWA 134 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA-NPINLDGLGVLNLER 239 P + Y QA+ + + A+ GG+ PH + GGV +P++ D + ++ Sbjct: 135 PYLG----QSYKQAVAWSKRYTEIYAIFGGQWPHGSAMVPGGVTTDPLSNDIIKAKSI-- 188 Query: 240 LMYIKS-FIDK------LSDFVEQVYKVDTAVIAAFYP--------------EWLTRGKG 278 L I + F++K L F++ K D A YP +W G G Sbjct: 189 LASITAEFLEKVILGGPLDQFLQVKSKRDLDQWAKDYPNGDISKIWNYGLEMKWDKIGSG 248 Query: 279 A-----VNYLSVPE-FPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAK 332 + ++++PE + S F G + DL + R I +E ++ E Sbjct: 249 SQYLMSYGHVTLPEHYDPASHVEKKRFREGLL---DLRT-REIHQIKEENIV----EFVS 300 Query: 333 HSWYK----DEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFY--GKTV--EVGPLANML 384 HS+Y D+ P+ G T P GKY++ K+ + GK V EVG LA M+ Sbjct: 301 HSFYSYEQGDKVGLHPYNGETTPLPP--ESKGKYTFTKAFRYKLGGKYVAPEVGALAMMV 358 Query: 385 VKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYS 444 V AG + + I S L R I R V + +I++ + Sbjct: 359 V---AGDPLMTDLVYRIGT----------------SVLAREIARIVRLARIHEIMREELE 399 Query: 445 ALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTW 504 + + D T++KP +G +G G +EA RG L HW+VI++G I NYQ V P+ Sbjct: 400 SY-----EYDEITYIKPEEKLSG--RGYGLVEASRGSLGHWLVIEEGKIKNYQVVTPTQI 452 Query: 505 NSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 N GP + + +L GT V +PN P+EV + S D CM C VHV+D G E++S+ Sbjct: 453 NMGPEDPFGNPSHLSIALQGTEVENPNNPIEVAHIVRSHDACMVCNVHVLDG-GKEILSM 511 Query: 565 KV 566 ++ Sbjct: 512 RL 513 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 147/574 (25%), Positives = 239/574 (41%), Gaps = 105/574 (18%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 R+ + P R+EG L + E+ +G V++A + M+RG E I+ RDP DA I RICG+ Sbjct: 3 RLILGPFNRVEGDLEVQLEVTDGRVTEARVNAPMFRGFELILNGRDPMDALSIAPRICGI 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ + ++++ +A A + VP N + N++LA DH+ HFY D+ A Sbjct: 63 CSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAVYA- 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 A P W + F + + + + A W Sbjct: 122 -ARP------------WFREAERRFAALAGSTSNGGLRSRAALAARARW----------- 157 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 ++ LGGK PH + GG + I + L R+ + Sbjct: 158 ------------------FELIGTLGGKWPHTGAVLPGGTSRAIETTER-IRLLARVREM 198 Query: 244 KSFIDK--LSDFVEQVYKVDTAVIAAFYPEWLTRGKGA--VNYLSVPEFPTDSKNGSFLF 299 ++F+++ +E+V +D+ +AA W R G+ +L + E + G Sbjct: 199 RAFLEQTLFGTALEEVATLDS--LAALQ-RWRARAAGSDMALFLDLAEATQLTNLGP--G 253 Query: 300 PGGYIENADLSSYRPITSHS------DEYLIKG-------IQESAKHSWYKDE-APQA-- 343 PG Y+ + + H+ D L +G I E A+H+WY + + QA Sbjct: 254 PGRYLSYGAYARFE--GGHALARGVWDAALQQGLPLDPTQISEDARHAWYAESTSAQALH 311 Query: 344 PWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVA 403 P G T P D G YSW K+P + VE G +A LV Q + V Sbjct: 312 PMAGLTQPEPD---KPGAYSWNKAPRLGSQVVETGAIARQLV-------DGQPLIRAAVL 361 Query: 404 IYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI 463 + G T+ R++ R + + +++ AL + H +P Sbjct: 362 AH----GGTVYT--------RVLARLLEMARILPLMEQWLLALQPH--APFHAVQAQPE- 406 Query: 464 PATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 + +G+G EA RG L HW+ I++G I++YQ V P++WN PR+ G E +LV Sbjct: 407 ----QAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAGTPGALEAALV 462 Query: 524 GTPVADP-----NKPLEVVRTIHSFDPCMACAVH 552 G + + + + V + SFDPCM C VH Sbjct: 463 GARLDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 149/603 (24%), Positives = 238/603 (39%), Gaps = 89/603 (14%) Query: 8 DPVTRIEGHLRIDCEI--ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 DP+TRI G L I +I EN V++ +++ +++RG +K +DPRD+ I RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 HA SV A A + P A +I N+ AA DH + L +D+ + Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCE------- 138 Query: 126 DPTKASEMLKGVSTWH----LNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 E GV W +P I D++ + Sbjct: 139 --QMVRETNPGV--WEKAKTAEAPHAAEHGYRTIADIMTA-------------------- 174 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 +N Y + L R + L+ G+ H L GGV + L + RLM Sbjct: 175 -LNPFTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPTIQ-LFTDYITRLM 232 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK------GAVNYLSVPEFP----TD 291 F+ K+ + ++ + + E + R + G+ +V ++ T Sbjct: 233 KYVEFMKKVVPLHDDLFDFFYEALPGY--EEVGRRRILLGCWGSFQDPNVCDYNYRTMTK 290 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP---------- 341 G F+ PG + + +L + + + + ++ G S W +E Sbjct: 291 WGRGMFVTPG-VVVDGELLTTDLVDINLNIRILLG--SSFYQDWDHEETSVKNDPLGNAV 347 Query: 342 --QAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVE--------VGPLANMLVKLAAGR 391 + PW TT+P + G Y+WV SP + K GP+A + AG Sbjct: 348 DRKHPWNQTTLPRPQKRNFGGNYTWVMSPRWLDKRTGDHLALDTGGGPIARLWATALAGL 407 Query: 392 ESTQ--NKLNEIVAIYQKLTGNTLE------VAQLHSTLGRIIGRTVHCCELQDILQNQY 443 V IY T E + + + R RT Sbjct: 408 VDIGYIKSTGHSVKIYLPRTALKPEAEFEWKIPMWSNAIERDRARTYFQAYSAAAALYFA 467 Query: 444 SALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPST 503 + + G TF +P E G GF EA RG+LSH +VI+DG I+NY P+ Sbjct: 468 EQALAELHAGRTRTFTDFKVP--DEAIGCGFHEAVRGVLSHHLVIRDGKIANYHPYPPTP 525 Query: 504 WNSGPRNFNDDVGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVHVVDADG 558 WN+ PR+ GPYE ++ TP+ + N P ++++R + SFDPC+ C VH+ +G Sbjct: 526 WNASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMRAVRSFDPCLPCGVHMYVGNG 585 Query: 559 NEV 561 + Sbjct: 586 KTI 588 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 148/586 (25%), Positives = 244/586 (41%), Gaps = 69/586 (11%) Query: 22 EIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALN 81 E+++G V A SGT +RG E+++ RDP DA QR+CG+C+T HA ++ A ES Sbjct: 2 EMKDGSVVDARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESLAG 61 Query: 82 I--DVPVNAQYIRNII-----LAAHTTHDHIVHFYQLS------ALDWVDITSALQADPT 128 +P +A +RNI+ L +H + ++ L+ L + D+ +AL + Sbjct: 62 ATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPDLADPIYGDLLRYSDVGTALTGELA 121 Query: 129 KASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 + ST H +T + I+ + +G+ G H + +P V + Sbjct: 122 GRFNVPGYASTGHTAPGSAYT---DAIRFVKLTGEAEAILGGRSPHSPVIVPGGVTVRPS 178 Query: 189 AHYLQALE-CQRD-----ANRVVALLGG----KTPHIQNLAVGGVANPINLDGLGVLNLE 238 A L L+ C R+ L + H + N I G L++E Sbjct: 179 ASDLMKLKGCYASIVDFLERRLTYPLSLDEWLENTHSTQANPDFILNRIKSLPTGDLSME 238 Query: 239 R----LMYIKSFIDKLS--DFVEQVYKVDTAVIAAFYPEW-----------LTRGKGAVN 281 + + F ++ DF+ V+ + YP + R + Sbjct: 239 KGWNDMQLFSVFCSRMMSYDFLSMPIYVELDTLGG-YPLYDQLIGFLNYGGFYRVRDRAG 297 Query: 282 YLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP 341 + P D + G+F P G+ + + + +D ++ + S+ E Sbjct: 298 NFTDGYSPVDGEEGTFEIPSGFTPGS-MPNLFDSPGKADPAMVAEQVSGSFFSYSGGETA 356 Query: 342 QAPWEGTTIP---AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 P G T P A D KYS+VK+P + E GPLA M+ RE + Sbjct: 357 LKPEAGETSPSPRAADIDYSGHKYSFVKAPRYGNVPCETGPLARMI----NSREPYIMNI 412 Query: 399 NEIVAIYQKL--TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHT 456 +++ + +G + +++ R++ R C +L L + D Sbjct: 413 MQMMHFSNPVFSSGKSYNRTSVYT---RVLSRMQECLITAQLLGRWIDDLEVH---SDPR 466 Query: 457 TFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDV 515 + P P GE G +EAPRG L HWM + +DG I+ YQ + P+TWN+ PR+ Sbjct: 467 KYCVPVTPGRGE-AGACMIEAPRGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAETKF 525 Query: 516 GPYEQSLVG---TPVAD-PNK---PLEVVRTIHSFDPCMACAVHVV 554 GP E SL+G TP + P P+ + I SFDPC++CAVH + Sbjct: 526 GPIELSLIGAKTTPRGNIPGSEVNPISLYHIIRSFDPCVSCAVHTI 571 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 71/153 (46%), Positives = 100/153 (65%), Gaps = 5/153 (3%) Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD----HTTFVKPNIPATGEFKGVG 473 L STLGR R + + LQ + L+ N+ GD + T +P+ T KGVG Sbjct: 115 LFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSA-KGVG 173 Query: 474 FLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 F EAPRG L HW+ I++ I +YQ VVP+TWN+GPR+ +G YE +L+GT +A P++P Sbjct: 174 FSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQP 233 Query: 534 LEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 LE++RT+HSFDPC+AC+ HV+D G E+V V+V Sbjct: 234 LEILRTLHSFDPCLACSTHVIDNHGGELVRVQV 266 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 1/91 (1%) Query: 3 QRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +RI +DPVTRIEGH+R + I+ N V++ A ++GTMWRG+E I+K RDPRDAW V+RIC Sbjct: 17 RRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERIC 76 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIR 92 GVCT THAL+S+RA E+AL I +P NA IR Sbjct: 77 GVCTGTHALTSIRAVENALGIAIPDNANCIR 107 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 180/678 (26%), Positives = 277/678 (40%), Gaps = 167/678 (24%) Query: 4 RITIDPVTRIEGHLRIDCEIENGV---VSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 RI IDP+TRIEGHL + ++ +AW TM+RG E R P D + RI Sbjct: 9 RIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPEDLPHVTSRI 68 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV-HFYQLSALDWVDI 119 CGVC +HA +SV A + A + +RN+ A DHI H L L+ D Sbjct: 69 CGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFA---MTDHIYDHSIILGMLEGPDY 125 Query: 120 TSALQADPTKA-SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 ++A+ + T + + K V H + FT + + ++ L Sbjct: 126 SAAIVSKFTPSVYDHAKKVYAEHRDI-HGFTTIADIMEAL-------------------- 164 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 N + + A+ QR A L+ G+ H L GG++ I+ D +L Sbjct: 165 -----NPLTGKVWQYAVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDIS-DAENLL--- 215 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAF-----YPEWLTRGKGAVNYLSVPEFPTD-- 291 L Y I KL+ +V+ Y + +++ F P L ++Y E P++ Sbjct: 216 -LAYTTRLI-KLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSYAYTSE-PSECP 272 Query: 292 ---------SKNGSFLFPGGYIENADLSSYRPITSHS--DEYLIKGI------------- 327 + +G F P Y E D+ Y P+ + D+ IK + Sbjct: 273 GMKTTVLAVTSSGIFDDPEAYGE--DMPQYDPVEFYKAIDKAAIKRLLKPGIVIRGELVS 330 Query: 328 -------------------QESAKHSWYKDEAPQA-------------PWEGTTIPAYDG 355 ++ K WY+++ P+ PW TIP +G Sbjct: 331 TSLKEYQRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLHGKYDAKYHPWNKVTIPKLEG 390 Query: 356 ----WSDDGKYSWVKSPTFYGKT-----VEVGPLANMLVK----------------LAAG 390 WS GKY+W K EVGP A +L+ A G Sbjct: 391 KAINWS--GKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWFKAGG 448 Query: 391 RESTQNKLNEIVAIYQKLTGNTLE-------VAQLHSTLGRIIGRTVHCCELQDILQ--- 440 RE T ++ A +L G+ E V + +T+ R+ R + L D++ Sbjct: 449 REIT---VHLPRACTDELPGSVCEPMEFKWKVPPISTTIYRLWARAFNL--LLDVVGAWK 503 Query: 441 --NQYSALITNIGKGDHTTFVKP-NIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQ 497 +QY +L+ +T +P +P T F G GF EAPRG + HW+V ++G + N Q Sbjct: 504 GVSQYRSLLDK----RYTETSRPWKVPRTITF-GFGFTEAPRGTVRHWVVQENGKVLNVQ 558 Query: 498 AVVPSTWNSGPRNFNDDVG--PYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACA 550 P+T N P +D G P+EQS + + V + P L+ VR+I SFDPC+ACA Sbjct: 559 IHAPTTGNVSP---HDRFGYSPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACA 615 Query: 551 VHV-VDADGNEVVSVKVL 567 VH+ DG V +V+ + Sbjct: 616 VHLAFRKDGKTVKTVEKM 633 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/136 (50%), Positives = 91/136 (66%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 R IDP+TRIEGHLR++ E++NGVV+ AW SG +RGME +V++R P DA IVQRICGV Sbjct: 3 RSIIDPITRIEGHLRVEMEVDNGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRICGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +HA S AAE A +I + NA+ IRNII A H HI+ FY L+ D+V+ +AL Sbjct: 63 CPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPLNAL 122 Query: 124 QADPTKASEMLKGVST 139 A+ A +++ T Sbjct: 123 NANIATAYDLVSSAGT 138 >UniRef50_UPI0001913BF4 hydrogenase 2 large subunit n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001913BF4 Length = 65 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 58/65 (89%), Positives = 61/65 (93%) Query: 266 AAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIK 325 AA+YPEWL RGKGAVNYLS PEFPTD KNGSFLFPGGYI NADLS+YRPITSHSDE+LIK Sbjct: 1 AAYYPEWLERGKGAVNYLSAPEFPTDGKNGSFLFPGGYITNADLSTYRPITSHSDEFLIK 60 Query: 326 GIQES 330 GIQES Sbjct: 61 GIQES 65 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 17/208 (8%) Query: 149 TKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALL 208 T+++++++ V G+LGIF NGYWG+ KL P NL+A+ HY QALE QRD +++ + Sbjct: 38 TEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQRDLGQMMTIF 97 Query: 209 GGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAF 268 GGK PH Q+L VGGV + I++ + + K ++ F++ Y +++ Sbjct: 98 GGKDPHPQSLVVGGVTSIIDIK-----DPAKRQLFKGLALRVRAFIKGAYMPGMYMLSEM 152 Query: 269 YPEWLTRGKGA--VNYLSVPEFPT---DSKNGSFLFPGGYIENADLSSYRPITSHSDEYL 323 Y + G+GA ++L FP D LFPGG + N DL+ + D L Sbjct: 153 YKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDLTK----VTDFDPAL 208 Query: 324 IKGIQESAKHSWYKDEAPQAPWEGTTIP 351 + E H+WY AP+ P++GTT P Sbjct: 209 VT---EDVTHAWYAAPAPEHPYDGTTTP 233 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 159/629 (25%), Positives = 247/629 (39%), Gaps = 97/629 (15%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE--NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 + I IDP+TRIEGHL + E++ + + W TM+RG E ++ R P DA I R Sbjct: 33 TAEIFIDPITRIEGHLGLKAEVDVTSRKTTNTWVFATMFRGFEVFMRGRPPEDAIAISSR 92 Query: 60 ICGVCTTTHALSSVRAAESALN-IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 +CGVC +HA ++ A + AL + P+ + +DH + L D+ + Sbjct: 93 VCGVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSE 152 Query: 119 IT------SALQADPTKASEM--LKGVSTWHLNSPEEFTKVQNKIKDLVASGQ-----LG 165 + S +A T +E + G T + ++ + +I L Q G Sbjct: 153 VAVSKLTPSCWEAAKTTPAEYSAVHGYRT-IADIMKDMNPITGRIWQLTVKYQRIAREAG 211 Query: 166 IFANGYWGHPAMKLPPEVNL-IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA 224 + G HPA +P ++ ++ A YL R ++ A +LA Sbjct: 212 VLIYGRHSHPATLIPGGISTDLSTAQYLFEGYAFR-LTQLTAWTKFVVAVWMDLADFYNK 270 Query: 225 NPINLDGLGVLNLERLMYIKSFID------KLSDFVEQVY-KVDTAVIAAFYPEWLTRGK 277 N N + G + ++Y D +L D + +Y K+D P L G Sbjct: 271 N-CNYEDEGYTYSKPILYSSGVFDDPEAYSQLGDDYKTIYEKIDEVAKKRAAPPGLYIGG 329 Query: 278 GAV--NYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW 335 V N + + SF Y E D ++ T + L+ G + W Sbjct: 330 ELVTENITEHQRNVVELVDSSF-----YEEWKDKTTLFTKTDPAGNPLVGGDETLV---W 381 Query: 336 YKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK----TVEVGPLANMLV------ 385 Y PW TTIP S GKYSW + Y K EVGP+A M V Sbjct: 382 YH------PWNKTTIPRPTDSSWSGKYSWAATVRLYWKGKLYPFEVGPIAKMYVMAHSNL 435 Query: 386 ----------------KLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 K+ +++N + ++++T T +T+ R+ R Sbjct: 436 KGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEEVT-FTYYAPPKSTTIERVRARA 494 Query: 430 VH-CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 ++ D L KG PA G G LE PRG + HW+V+ Sbjct: 495 FDMAVDVADAWAFVLRGLYYINSKGMTQASRPWKEPAFS--LGFGQLEVPRGNVEHWIVV 552 Query: 489 KDGIISNYQAVVPSTWNSGPRNFNDDVG-------------------PYEQSLVGTPVAD 529 K+G I+NYQ P+T N GPR ++ P+E + + T V++ Sbjct: 553 KNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTKSPEGYCLSPFEAAALHTVVSE 612 Query: 530 PNKP-----LEVVRTIHSFDPCMACAVHV 553 +P L+ VR I SFDPC+ACA H+ Sbjct: 613 EVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 131/280 (46%), Gaps = 33/280 (11%) Query: 261 DTAVIAAFYPEWLTRGKGAVNYLS--VPEFPTDSKNGSFLFPGGYIENADLSSYRPITSH 318 DT +IA Y + L GKG Y++ V E P+ ++ G EN +++ Sbjct: 4 DTKIIAPAYTDALHFGKGCGRYVAWGVFERPSMEPTDRYMPAGVVWENLNVTD------- 56 Query: 319 SDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG---------------KYS 363 DE LIK E HSWY ++ P EG T P Y + G +Y+ Sbjct: 57 PDEALIK---EYVGHSWYVGDSDLNPVEGVTDPEYTSYYVPGSEHEENGHMIGTVNDRYT 113 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 W K P++ GK +E GP + +L G E + ++ + A+ L L + L STLG Sbjct: 114 WSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADLG---LTIPDLQSTLG 170 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R+ R V C + +++ LI I +GD F P + +G G EAPRG L Sbjct: 171 RVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPERLSG---RGTGMWEAPRGALL 227 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 H + +G I+ YQ ++P+TWN PRN GP EQ+L+ Sbjct: 228 HTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 147/565 (26%), Positives = 224/565 (39%), Gaps = 125/565 (22%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS++ IDPVTR+EGH +I +++ G V A T +RG EE V+ R + I R Sbjct: 1 MSKKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L++ +AA+ ++ DVP +A +R ++ H + F+ LS+ D V Sbjct: 61 ICGICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLV-- 118 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 L D A ++GV E ++ + DL + GQ Sbjct: 119 ---LGYDADPADRNIEGVLA-------ENPQLAERGIDLRSFGQ---------------- 152 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINL-DGLGVLNLE 238 V+A LG K H GGV+N ++ DG +L Sbjct: 153 -----------------------NVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEES 189 Query: 239 RLM--YIKSFIDKLSDFVEQVYK--VDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN 294 + + Y++ ID L D E++ +D A Y +T G +Y +S Sbjct: 190 QPLAGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHYDGDIRLVDES-- 247 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAY- 353 G +E D +YR I I E +K W P Y Sbjct: 248 ------GDQLEEIDDGAYRDI-----------IAERSKE-----------WSYLKFPYYK 279 Query: 354 DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 D +DG+Y VGPLA + A T E V G Sbjct: 280 DRGFEDGQYR-------------VGPLARL---NAVDDVRTPQAHEEWVEFMDAAEGAVH 323 Query: 414 EVAQLHSTLGRIIGRTVHCCE-LQDILQNQ--YSALITNIGKGDHTTFVKPNIPATGEFK 470 E + + R+I ++C E +Q++L++ Y ITNI P P G Sbjct: 324 ERSTYYH-WARLI-EMLYCVERIQELLEDDDVYDG-ITNI----------PTKPKAG--T 368 Query: 471 GVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 GVG +EAPRG L H I D G + N +V +T N+G N V ++ + P Sbjct: 369 GVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGA--MNKGVTSAAETFIDGPEIP 426 Query: 530 PNKPLEVVRTIHSFDPCMACAVHVV 554 ++ I +DPC++C+ H + Sbjct: 427 EGILNKMESVIRCYDPCLSCSTHAI 451 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 132/530 (24%), Positives = 206/530 (38%), Gaps = 107/530 (20%) Query: 26 GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVP 85 G V++A + ++RG E I++ R P DA IV RICG+C+ ++++ +A I Sbjct: 10 GFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQALADWARIKPV 69 Query: 86 VNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSP 145 N + +LA DH+ HF+ D+ SA + P W + Sbjct: 70 PNGALVAQTVLAVENLADHLTHFFLFFMPDFTH--SAYRTMP------------WFDAAV 115 Query: 146 EEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVV 205 F + + S + A W H +V Sbjct: 116 RRFAPYRGE------SAARWLAARAQWFH-----------------------------LV 140 Query: 206 ALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM-YIKSFIDK--LSDFVEQVYKVDT 262 LL G+ PH LAV + + L R++ ++ ++ + D ++ V +D+ Sbjct: 141 GLLAGRWPH--TLAVQPSGTTRTIHAMEQRELLRMVGQMRRYLTESLFGDTLDAVLALDS 198 Query: 263 AVIAAFYPEWLTRGKGAVNYLSVPE----FPTDSKNGSFL-------FPGGYIENADLSS 311 A + E R A ++ V F FL +P G E A +S Sbjct: 199 ADALLAWAE--GRESDAAFFIQVAHALELFTVGRAYDRFLSYGAYRAWPAGVWERATAAS 256 Query: 312 YRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFY 371 P+ DE I E SW A P EG T+P + YSW K+P ++ Sbjct: 257 V-PL----DE---AAIVEEVAASWLGGAASH-PAEGETVPWLE---RPDAYSWCKAPRYH 304 Query: 372 GKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVH 431 G E G LA +V AG ++ + Q+ G S R+I R Sbjct: 305 GAPAETGALARAVV---AGVPLARD-------LVQRWGG---------SLFSRVIARLWE 345 Query: 432 CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG 491 C + ++ A +T I F++P + E +GVG +EA RG L HW+ + +G Sbjct: 346 CARIVQWVE----AWLTEIDV--KAPFIEPVV-WPNEGRGVGLVEAARGALGHWLEVANG 398 Query: 492 IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL--EVVRT 539 I YQ + P+TWN PR+ GP E++L G P VVR+ Sbjct: 399 RIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEGLTTGAGAMPFVHHVVRS 448 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 105/411 (25%), Positives = 173/411 (42%), Gaps = 101/411 (24%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RI + P R+EG L I + + G V+ A + ++RG E I++ ++P DA + RICG+ Sbjct: 3 RIVVGPFNRVEGDLEIKLDTDQGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRICGI 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ + +++S RA +++D+P+N Q N++LA D + HFY D+ Sbjct: 63 CSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFA------ 116 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 +G+ + N P F V+++ K Q G A +V Sbjct: 117 -----------RGIYS---NEP-WFDSVESRFK-----AQKGSAA-------------KV 143 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPI----NLDGLGVL-NLE 238 L A + +L ++ ++ GK PH +L GG A PI + L +L + Sbjct: 144 MLPARSEFLH----------LMGIMAGKWPHSLSLQPGGSAKPIEAQERIRLLAILASFR 193 Query: 239 RLMYIKSFIDKL-----------------------SDFVEQVYKVDTAVIAAFYPEWLTR 275 + + F D L SDF ++ D +A+ Sbjct: 194 KFLEHTLFGDDLEAIAELGSWNELQNWREKHDWQHSDFTRFLHLSDQLHLASM------- 246 Query: 276 GKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW 335 G+ +LS +P D + G LF G +S+ + D+ KGI E +SW Sbjct: 247 GRATDQFLSYGNYP-DPQGG--LFKAG-------ASFAGAVTDFDQ---KGITEDLAYSW 293 Query: 336 YKD-EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLV 385 + P P G T P+ D ++ YSW K+P + +EVG LA L+ Sbjct: 294 MQSVNGPVHPAAGNTEPSLD---NEAAYSWCKAPRLNRQVMEVGALARQLI 341 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 133/563 (23%), Positives = 221/563 (39%), Gaps = 138/563 (24%) Query: 12 RIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 R+EG +++ EN + A+ +RG E I++NR P DA +I RICG+C +H ++ Sbjct: 11 RVEGEIQLKLIWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICGICGHSHLIA 70 Query: 72 SVRAAE-----SALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQAD 126 +V+A E + +ID+ A IRN+ +HI FY D++ + Sbjct: 71 TVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLKL------- 123 Query: 127 PTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLI 186 K ++L E+FT ++ Sbjct: 124 -EKDKDIL-----------EDFTPLKGD-------------------------------- 139 Query: 187 AVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGV-ANPINLDGLGVLNLERLMYIKS 245 + +AL + +++++L G+ PH GGV ++PIN Sbjct: 140 ---KWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPIN----------------- 179 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFP--TDSKNGSFL----- 298 +D VE + D+ + F+ E + G YLSV F D N L Sbjct: 180 -----TDIVEAISITDSVI--RFFEEEII-GTDINTYLSVESFDQFMDKINKGDLRRFIE 231 Query: 299 --FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 F G +E + R IT + ++ ++E K K P + ++ Sbjct: 232 LTFKNG-MEKTGRAYDRFITVDA---ILPCVREGVKK---KRSCKFDPSRIKEVDSHSFL 284 Query: 357 SDDG------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 + DG +YSW K+ + G +E GPLA V ++N L +Q L Sbjct: 285 TKDGTDFSRKRYSWAKAVRYDGLPMETGPLARKAV--------SKNSL------FQDLIS 330 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EF 469 + S L RI R + L++ ++ T +++KP + E Sbjct: 331 RFGD-----SYLVRIWARIDEIGRMALTLKSYLLSINTK-----EPSYIKPPVKIENLEG 380 Query: 470 KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 +G G +EA RG L H + ++ G I Y + P+TWN GPR P E++++G + Sbjct: 381 EGTGLIEAARGSLLHRLELEKGKIKKYTIITPTTWNLGPRCERYH-SPAEKAIIGLESS- 438 Query: 530 PNKPLEVVRTIHSFDPCMACAVH 552 L+ + SFD C C H Sbjct: 439 ----LKAEMILRSFDVCSVCTTH 457 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 126/554 (22%), Positives = 214/554 (38%), Gaps = 122/554 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RI + R+EG +++ ENG + A RG+E +++ R DA +I R+CG+ Sbjct: 2 RIEKRLLARVEGTAQLELVWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCGI 61 Query: 64 CTTTHALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 C H ++ V+A E A+ ++ + A+ +R+I L +HI FY D++ + Sbjct: 62 CGHAHLMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFIRLGEK 121 Query: 123 L-QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA--NGYWGHPAMKL 179 L + +P + + +S VAS + + A G W H + + Sbjct: 122 LDEFEPFRGKRWKEAIS--------------------VASEAIKVIAIFGGQWPHSSYAV 161 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P + +++ D ++ +AL+ VG P+ L+L + Sbjct: 162 PGGIT----SNFTST-----DVSKALALVSRVEGFFLESLVG---MPVE----AFLSLRK 205 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + + F++ +K + Y LT G+ FP + Sbjct: 206 HGSWEGLKGDVKLFIDLCFKYGLERVGMSYGRLLTGGE---------VFPC-------IT 249 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 PG + L S I I+ EA +P+ G Y+G Sbjct: 250 PGHFTGEKKLCSLN----------ISKIR----------EADGSPYSGAKRVRYNGMP-- 287 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 E GPLA + +G N V K+ G++ V Sbjct: 288 ---------------YETGPLARQFL---SG--------NPFVKRLHKMYGDSYMV---- 317 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGD-HTTFVKPNIPATGEFKGVGFLEAP 478 R++ R + EL ++ + ++L + I + F KP TGE GVG +EA Sbjct: 318 ----RVLSRLLEVWELTSTVKEKLTSLYSFIKEPSCQIPFQKPE-RITGE--GVGIVEAA 370 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L H + I+ G+I+ Y + PS WN GPR +G E++++G P+ Sbjct: 371 RGTLIHRVSIEKGVITRYHIITPSVWNLGPRC-EKYLGVAEKAMIGL-----ENPIHAEM 424 Query: 539 TIHSFDPCMACAVH 552 + SFD C C H Sbjct: 425 VLRSFDVCSVCTTH 438 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 138/563 (24%), Positives = 216/563 (38%), Gaps = 132/563 (23%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 T++ V RIEG +++C +NG++ + +RG E I++++ P DA + RICG+C Sbjct: 3 TVNLVERIEGEAKLNCSWKNGIIIDSRIDFLNFRGFEYILEDKSPLDALVYTPRICGICG 62 Query: 66 TTHALSSVRAAESAL-NID----VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 H ++V E A NID + A+ +R I L HI FY D + Sbjct: 63 QAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDII--- 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA---- 176 L ++ E LKG W E KV ++ L I A G W H + Sbjct: 120 -KLNSNDLNIYEPLKG-KKWL-----EACKVASE-----TIKALAIIA-GQWPHSSYMIP 166 Query: 177 ---MKLPPEVNLIAVAHYLQ-ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 M P +++LI + +YLQ A+ D+ I N ++ + ++D Sbjct: 167 GGVMSDPTKMDLINMQNYLQIAINFFEDS-------------IVNTSLDNYLSFTSVD-- 211 Query: 233 GVLNLERL-MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 N E++ +K F D AF E GK ++S+ E Sbjct: 212 ---NFEKIGGDLKLFKD-----------------LAFKYELQNYGKSYNRFISLSETNLF 251 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 K F I DLS I +SD + KH+W K+ Sbjct: 252 KKGR---FSSKVINKIDLS---KILENSDSTFTLSGDNTQKHTWSKN------------V 293 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 YD F+ E GPLA ++ S + + +I + Sbjct: 294 TYDD-------------AFF----ETGPLARAII-------SNRKFIKDIHKNFD----- 324 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP--ATGEF 469 S R++ R L + +N S + T +F+KP I + Sbjct: 325 -------DSAFTRVLARLDELAFLLEDTKNLISKVNTK-----EASFIKPKISLNKIDKV 372 Query: 470 KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 + V +EA RG L H + I+ G I Y + P+ WN GP N + G +++++GT D Sbjct: 373 EAVSAVEATRGSLYHKIDIEKGKIKLYDVITPTVWNLGPSN-KKEQGIAQKAIIGTSSID 431 Query: 530 PNKPLEVVRTIHSFDPCMACAVH 552 K + + SFD C C H Sbjct: 432 IAKII-----LRSFDVCSVCTTH 449 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 34/238 (14%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS+RI I P +R EGH + E+++ G+V+K + S T RG+E+IV + P A +IVQ Sbjct: 1 MSERIVISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVC H L+SV A + +L+I+VP + +R + LAAH + H +H + L A D+V Sbjct: 61 RICGVCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHF-LIAPDFV- 118 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 L AD +NS E K + D+VA G HP+ Sbjct: 119 -PENLMADA--------------INSVSEIRKNAQYVVDMVA---------GEGIHPS-- 152 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 +V + +A + L +R R+ L H++ L +G + + GLGV N Sbjct: 153 ---DVRIGGMADNITELARKRLYARLKQLKPKVDEHVE-LMIGLIEDKGLPKGLGVHN 206 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+++I+IDP+TR+EGH +ID + ++G V ++ RG E+ + R + I + Sbjct: 1 MAKKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPK 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 ICGVC H ++S +AA++ + P A+ IR + AH H HI+HF+ L+A D++ Sbjct: 61 ICGVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFM 118 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 136/587 (23%), Positives = 225/587 (38%), Gaps = 148/587 (25%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M + ITIDPVTRIEGH RI +++ G+V T RG E R + + R Sbjct: 1 MPKTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 CG+C +H L+S +A + L + +P A +R ++ H + F+ L++ D Sbjct: 61 TCGICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPD---- 116 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 +L G+ +PE Q I L A+ Sbjct: 117 -------------LLLGMDA----APE-----QRNIFGLAAAR----------------- 137 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 PEV +A +R +++ L GK H + GGV+ P++ + + E Sbjct: 138 -PEVAKEGIA-------LRRFGQQLIERLAGKRIHPDWVVPGGVSRPLSRENGAAIAAEL 189 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAF--YPE-WLTRG--KGAVNYLSVPEFPTDSKN 294 +++ + L ++ V + TA IA F +P WL G + Y P D + Sbjct: 190 PGMLQAAQNNLV-LLQGVLENFTAEIAHFANFPSGWLALAGEAGQLEYYDGPLRLLD-QQ 247 Query: 295 GSFLFPGGYIENADLSSYR---PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 G LF AD Y+ S +D YL K +++ + P+A Sbjct: 248 GEELF-----SEADPLRYQQQLAEQSEADSYL--------KSPYHRPQGPEA-------- 286 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 G Y VGPLA +L A R +E +A +++L+ Sbjct: 287 --------GLY-------------RVGPLA----RLNAARRCGTPLADEALAAFRELSPQ 321 Query: 412 TLEVAQLHSTLGRIIGRTVHCCE-LQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF- 469 + H R+I +H E +Q +L + T P + AT Sbjct: 322 GPVTSSFHYHYARLI-EIIHGLEKIQQLLADD--------------TIYDPRVRATAGAN 366 Query: 470 --KGVGFLEAPRG-MLSHWMVIKDGIISNYQAVVPSTWNS---------GPRNF----ND 513 +GVG EAPRG ++ H+ + + G IS ++ + NS R F + Sbjct: 367 APEGVGICEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAIQRGLKQAARAFINGNGE 426 Query: 514 DVGPYEQSLVGTPVADPNKPL------EVVRTIHSFDPCMACAVHVV 554 + G + +A+ NK + + + +DPC++C+ H + Sbjct: 427 NDGESGKRAESREIAE-NKEIREGLLNRIEAVLRCYDPCLSCSTHAL 472 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 80/130 (61%), Gaps = 6/130 (4%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M RI I P +R EGH + E+++ G+V+K + S T RG+E++V ++P A ++ Q Sbjct: 1 MKDRIVISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV- 117 RICGVC H L+SV A + +L+I+VP + +R LAAH + +H + L A D+V Sbjct: 61 RICGVCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHF-LIAPDFVP 119 Query: 118 --DITSALQA 125 D T+A+++ Sbjct: 120 EEDFTTAVKS 129 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 127/588 (21%), Positives = 218/588 (37%), Gaps = 142/588 (24%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I IDPVTRIEGH +I +++ G V A T +RG E+ R + I RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C +H L+S + + L++ +P A +R ++ H + F+ LSA D+ Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSA---PDLLL 118 Query: 122 ALQADPTKASEM-LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + ++P K + L GV PE +A G Sbjct: 119 GMDSEPAKRNVFGLIGV------DPE------------LARG------------------ 142 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 + ++ ++ LLGGK H GGV++P L E Sbjct: 143 -------------GIRLRQFGQEIIELLGGKKIHPAWAVPGGVSDP--------LTTENR 181 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV--PEFPTDSKNGSFL 298 +I++ I + V + ++ + E T G ++ + P+ ++ +G Sbjct: 182 SHIQNRIPEAKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMGLVTPQGLWETYDGHLR 241 Query: 299 F--PGGYIENADLSSYRPITSHSDEYLIKGIQESA--KHSWYKDEAPQAPWEGTTIPAYD 354 F GG I L + + E++ + +QE + K +Y+ P Sbjct: 242 FVDSGGNIVADKLEA-----DNYHEFIGEAVQEDSYLKSPYYR------PL--------- 281 Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 G+ D + + S + VGPLA + + G +L E Sbjct: 282 GYPDSKDHCRLDSGMY-----RVGPLARLNICSQIGTPLADQELREF------------- 323 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV--KPNIPAT------ 466 RT ++ Y+ LI + +H + P+I +T Sbjct: 324 -------------RTYGSGTVKSSFFYHYARLIEILASVEHIEILLDDPDILSTRLRAAA 370 Query: 467 --GEFKGVGFLEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 + VG EAPRG L H+ + ++G+I ++ + N+ N V + + Sbjct: 371 GINRLEAVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNN--LAMNRTVAQIARHFI 428 Query: 524 GTPVADPNKPLEVVRTIHSFDPCMACAVH----------VVDADGNEV 561 V I +FDPC++C+ H +VD DGN V Sbjct: 429 QGSQIQEGMLNRVEAGIRAFDPCLSCSTHAFGKMPLVIELVDKDGNLV 476 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+P++R+EGH ++ + ENG T RG E+ V R + IV RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +C T H L+SV+A ++A +++P A+ +R ++ + H H +HFY L+A D+V Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFV 117 >UniRef50_UPI0001913F01 hydrogenase 2 large subunit n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001913F01 Length = 71 Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 38/40 (95%), Positives = 39/40 (97%) Query: 90 YIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTK 129 YIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL+ADP K Sbjct: 1 YIRNIILAAHTTHDHIVHFYQLSALDWVDITSALKADPEK 40 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M ++I + PVTRIEGH +I +++ N + A + RG E+ ++ R +A IV + Sbjct: 1 MVKQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQ 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 ICG+C +H L++ +A + ++ P A +R ++ H H +HFY L A D+V Sbjct: 61 ICGICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFV 118 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 471 GVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 GVG +EAPRG L H + + G+I+ +V + N+ + N + Q ++ +P + Sbjct: 367 GVGVIEAPRGTLIHDYDTDEKGMITKANIIVATAHNN--KAINLGLKNTAQKIINSPTPE 424 Query: 530 PNKPLEVVRTIHSFDPCMACAVHVV 554 + I ++DPC +CA H V Sbjct: 425 EGILNRMEMVIRAYDPCFSCATHSV 449 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 11/177 (6%) Query: 5 ITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +TIDP+TR+EGH +ID + E G V +A+ RG E R D I RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +++ +A + +++ A+ IR ++ A DH +H Y L D++ A Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFIVGPQA- 145 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 P ++ ++ L + + ++++L+A + G HP + LP Sbjct: 146 ---PAAERNVIGVINKVGLEVGKRVIATRRRLRELIA------YFGGKVIHPVLGLP 193 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M QRI IDPVTRIEGH +I +++ G V+ A T +RG E+ + R + I R Sbjct: 1 MPQRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 ICG+C +H L+S +A + L + +P A+ +R ++ H + F+ LS+ D + Sbjct: 61 ICGICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLL 118 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +++I+PVTR+EGH ++ ++ G + K RG E+ ++ R DA + RICG Sbjct: 3 KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPRICG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +C +H L+S +A ++ + +P A +RN+I A H H +HF L++ D + Sbjct: 63 ICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLM 117 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 466 TGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 TGE GVG +EAPRG L H D GII++ VV + N+ + V + + Sbjct: 367 TGE--GVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDIG--VQKVAEKYIK 422 Query: 525 TP-VADPNKPLEVVRTIHSFDPCMACAVHVV 554 TP VA P+ + I ++DPC++CA H + Sbjct: 423 TPEVAKPHILNHMEMVIRAYDPCLSCATHTI 453 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++ITI P+TRIEGH + ++++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 G+C T H L++ +A + +P A +R +++A H +H + LS D++ Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYL 117 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 40/220 (18%) Query: 361 KYSWVKSPT-FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 K++ +KS + FY VGPLA + V + G L E A Y G + L+ Sbjct: 271 KFTKLKSGSGFY----RVGPLARVNVADSMGYPEADKMLAEFRAKY----GRAPQQPALY 322 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 + L RII +LQ++ IT+ V+ + +GVG +EA R Sbjct: 323 N-LARIIEVAAASERALALLQDR---AITDKN-------VRNPVAGIKNTRGVGIVEATR 371 Query: 480 GMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQS---LVGTPVADPNKPLE 535 G L H + D G I++ +V + N N D G +E + + G AD + Sbjct: 372 GTLIHDYTVNDKGFITSANLIVATGHN----NRAIDRGVFETAKKYIHGD--ADEATLNK 425 Query: 536 VVRTIHSFDPCMACAVHVV----------DADGNEVVSVK 565 + + ++DPC++CA H + D++GN + VK Sbjct: 426 IEMLVRAYDPCVSCATHAIGRMPIILSLFDSEGNVIREVK 465 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 152/385 (39%), Gaps = 89/385 (23%) Query: 10 VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHA 69 + R+EG + + E G + A+ +RG E I++N+ D +I R+CG+C H Sbjct: 9 LNRVEGEIELKLIWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCGICGHAHL 68 Query: 70 LSSVRA-----AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 +++ A E+ I+V A+ IRNI L+ +H+ FY D++ AL+ Sbjct: 69 IATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLKFNKALE 128 Query: 125 -ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P K + K V ++ +KI ++A IFA G W H + +P V Sbjct: 129 DFYPIKGKKWRKAV------------ELSSKIVKVIA-----IFA-GQWPHTSYSVPGGV 170 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 Q + ++++ + + +G + + L + NL Sbjct: 171 ---------MCEPTQTEIIEAISIVDSVLEYFEEDVIGMKID----EYLSITNL------ 211 Query: 244 KSFIDK----LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 K F+DK L +E+ K+ I Y +LT +N + E T K SF Sbjct: 212 KEFLDKSEGDLKTIIEEAMKLGFKDIGKAYDRFLTVCN--INPF-ISEGITRRKKCSF-- 266 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 D++ + I + S +L KG + +K Sbjct: 267 --------DINKVKEIETFS--FLEKGKPKFSKR-------------------------- 290 Query: 360 GKYSWVKSPTFYGKTVEVGPLANML 384 KYSW K+P + GK E GPLA + Sbjct: 291 -KYSWAKAPRYEGKPFETGPLARRI 314 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M Q I I PVTRIEGH I ++++ G V + RG E+ V+ + + IV R Sbjct: 1 MGQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 ICG+C H L+S +A + + P + +R ++ A + D I+HFY L+A D+V Sbjct: 61 ICGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFV 118 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 ITIDPVTRIEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I I +TR+EGH I ++NG +V WA R E ++K A + RICG+ Sbjct: 9 INIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGI 68 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ +H+L+++RA E A+ I P A+ +R + + T H +H + L+ D+ + S L Sbjct: 69 CSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVL 128 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 471 GVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 G +EAPRG+L H+M D G++ ++P+T N+G N DD+ L+ D Sbjct: 346 ATGAVEAPRGILYHYMETNDEGMVVRADCIIPTTQNNG--NIYDDLQALAAELLREGKCD 403 Query: 530 PNKPLEVVRTIHSFDPCMACAVH 552 L+ + S+DPC++C+VH Sbjct: 404 GEIQLQCEMLVRSYDPCISCSVH 426 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 67/370 (18%) Query: 191 YLQALECQRDANRVVALLGGKTPHIQNLAVGGV-ANPINLDGLGVLNLERLMYIKSFIDK 249 +++AL +V+AL GG+ PH GGV +P + L + F+++ Sbjct: 138 WVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYE---------LSQAELFLER 188 Query: 250 LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP--EFPTDSKNGSFLFPGGYIENA 307 L F E WL G YLS+ + D + G + E A Sbjct: 189 LKTFFES---------------WLL-GMPLEEYLSLKGRNYLKDIRGDL----GRFTEVA 228 Query: 308 DLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS----DDGKYS 363 + D ++ G + S + +P++ + D ++ + Y+ Sbjct: 229 IEHNLHEEGRSYDRFITGGELKPLFRSGFFTREGVSPFDADKVSENDEFTFFRRNGSAYT 288 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 W K+ + G E GPLA LV + N++ I +++++ S L Sbjct: 289 WSKAARYSGLPCETGPLARQLV--------SGNRV--IGSLFRRFGS---------SVLV 329 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI-PATGEFKGVGFLEAPRGML 482 R++ R L Q + K D ++ +P++ +GVG +EA RG L Sbjct: 330 RVVARMDEAVRLFTEAQRTLHRI-----KLDEPSWNRPSVDEKVFSGRGVGVVEAARGTL 384 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H + I+ G I +Y + P+ WN GPR+ + +G E++L+G D E+V + S Sbjct: 385 IHELEIEGGRIRSYNIITPTVWNLGPRD-AEHLGVAERALLGL---DSELKAEIV--VRS 438 Query: 543 FDPCMACAVH 552 FD C C H Sbjct: 439 FDVCSVCTTH 448 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG + + ++G V A+ +RG E ++K + DA +IV R+CG+ Sbjct: 2 KIERKVLNRVEGEIELKLLWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCGI 61 Query: 64 CTTTHALSSVRAAESALN-----IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H ++ V+A E A + + + A IR + L +H+ FY D V Sbjct: 62 CGHAHLMACVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVK 121 Query: 119 ITSAL 123 + ++ Sbjct: 122 LEPSI 126 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + ITID + R+EGH I + E G+ S + R E ++K + RDA IV R+C Sbjct: 2 ETITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 +C+ H L+SV A ESAL I V Q R ++ H +H + L+A D++ S Sbjct: 62 SICSAGHTLASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNAS 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLV 159 LQ ++ KG+ E +V N ++++V Sbjct: 122 ILQMASHFPEQVQKGL---------EIKRVGNLVQEVV 150 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 16/97 (16%) Query: 467 GEFKGVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLV 523 GE G+ LE PRG L H + V +G+++ + P+ N R+F VG + Sbjct: 339 GEQMGLAALEVPRGTLYHLYGVNGEGVLTQADIITPTAQNLAHVERDFAHGVGYW----- 393 Query: 524 GTPVADPNKPLEVVR-----TIHSFDPCMACAVHVVD 555 + P + E +R ++DPC++C+ H+VD Sbjct: 394 ---LEQPQRQQEQLRLYLEMIARAYDPCISCSTHLVD 427 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T++PVTRIEGH +I +++ G V +RG E+ ++ R +A IV RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNI---DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +C H L++ +A ++ DV A +R I+ H H +HFY L+A D++ Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFI 120 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 471 GVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 GVG +EAPRG L+H + ++G+I+ VV + N+ + Q + V Sbjct: 367 GVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMG--IQKVAQDYIKPGVEV 424 Query: 530 PNKPLEVVR-TIHSFDPCMACAVHVVDA 556 +K ++ I ++DPC++CA H +D+ Sbjct: 425 DDKIFNLMEMVIRAYDPCLSCATHTIDS 452 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 11/145 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 S+ I IDPVTRIEGH ++ + E+G + A RG E+I+ + I RI Sbjct: 10 SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKILVGMEANRMPHITARI 69 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV--- 117 CGVC T H +++ A + A + P A +R ++ H H H + + L D V Sbjct: 70 CGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLVLGL 129 Query: 118 -------DITSALQADPTKASEMLK 135 ++ +QA+P A + L+ Sbjct: 130 DADPAIRNVVGIVQANPEVAKKALR 154 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQR 59 + +RI I+ +T+IEGH + EIE+ + + + R E + + + + R Sbjct: 2 VERRIRIEEITKIEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGR 61 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+CT H ++SVRA E AL I++ + +R ++L + HI+H Y L+ D+ ++ Sbjct: 62 ICGICTVAHEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNV 121 Query: 120 TSALQ 124 S ++ Sbjct: 122 ESIIE 126 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 23/233 (9%) Query: 330 SAKHSWYKDEAPQ-APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVE--VGPLANMLVK 386 S ++ Y+ E+ A W+G +IP Y G + S + P Y + + V ++ Sbjct: 199 SLEYPKYERESEYVALWDGHSIPLYKG--EIATLSSIFDPHQYQEHIREWVVEYSSAKHS 256 Query: 387 LAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSAL 446 L GR+ L + I + L E+A+ + R + L L+N + AL Sbjct: 257 LIEGRDYMVGALARL-NINRNLREEARELAERYGV--RFPSNRIAWINLAQALENVHFAL 313 Query: 447 -----ITNIGKGDHTTFVKPNIP-ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVV 500 N+ + D K NIP +GE GVG +EAPRG+L H IK+G + + Sbjct: 314 EAMEIAENLKEYDPH---KINIPRVSGE--GVGVIEAPRGLLIHHYKIKNGKCTYVNIIT 368 Query: 501 PSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV 553 P+ N+ N + Y +V D +E + I ++DPC++C+VHV Sbjct: 369 PTAMNT--ENIERILKGYISQIVSK--NDEYIKMEAEKIIRAYDPCISCSVHV 417 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+PV+RIEGH ++ +++ G V A+ T +RG E+I+ + +V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +C H ++++AA+ ++ A+ +R ++L AH DH + L+ D++ Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALPDFL 116 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%) Query: 462 NIPATGEFKGVGFLEAPRG-MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 N P +GVG +EAPRG ++ H+ + GI+ +V +T N R N VG Sbjct: 335 NEPQKVAGEGVGIVEAPRGTLIHHYWTDEKGIVRGSNLIVATTHNV--RAINHVVGK--- 389 Query: 521 SLVGTPVADPNKPLEVVRT-IHSFDPCMACAVHVVDA 556 V +D E V I +FDPCMACA H V+ Sbjct: 390 --VAERASDTRNLAEKVEVAIRAFDPCMACATHAVNG 424 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M++ + I P TR+EGH ++ ++++ G+V + W S T RG+E++ + I Sbjct: 1 MTKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIAS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVH 107 R+CG+C H L+S A E+++ ++P +A+ +R I+ AA+ H +H Sbjct: 61 RVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALH 109 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 48/200 (24%) Query: 368 PTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIG 427 PT+ G+ VEVGP A R +T +E Q + +E T+ R + Sbjct: 302 PTYDGQPVEVGPRA---------RLATFKNFDEKGTFAQHI-ARQMEYPDCCYTILRCL- 350 Query: 428 RTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMV 487 D L L +I +GD + N EAPRG H Sbjct: 351 ---------DNLNTSGKVLADHIPQGDGSMGWAAN-------------EAPRGSNIHLAR 388 Query: 488 IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCM 547 +KDG + Y +VP+TWN ++L G P + E+V + ++DPC+ Sbjct: 389 VKDGKVLWYDMLVPTTWN---------FPTCSRALTGAPW----QIAEMV--VRAYDPCV 433 Query: 548 ACAVHVVDADGNEVVSVKVL 567 +CA H++ + E + + L Sbjct: 434 SCATHMIVVNEEEKIVTQKL 453 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 10 VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHA 69 +TR+EG ++ E GV+ A S RG+E++++ R DA +I RICG+C H Sbjct: 8 LTRVEGEASLNLVWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICGICGHAHL 67 Query: 70 LSSVRAAESALNI-DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL-QADP 127 +++VRA E+A+ I ++P A+ R + +H+ FY D++ +L Q +P Sbjct: 68 IATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFEP 127 Query: 128 TKASEMLKGV 137 K + V Sbjct: 128 FKGERWKRAV 137 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%) Query: 470 KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 +G G +EA RG L H +VI+ G I +Y+ + PS WN GPR +G E+++VG Sbjct: 340 EGFGVVEAARGTLIHRVVIEKGKIKDYKVITPSQWNLGPRC-KKYLGVAEKAIVGL---- 394 Query: 530 PNKPLEVVRTIHSFDPCMAC 549 + L+ + SFD C C Sbjct: 395 -DSELKAQMVLRSFDLCSVC 413 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQ 58 ++ RI I P TR EGH ++ E+ E G+V+KA+ T RG E ++K + A + V Sbjct: 6 VTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVM 65 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNII 95 RICG+C TTH ++S A E+A++ +VP + +R ++ Sbjct: 66 RICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELV 102 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 97/245 (39%), Gaps = 60/245 (24%) Query: 331 AKHSWYKDEAPQAPWEGTTIPAYDGWSDD--GKYSWVKSPTFYGKTVEVGPLANMLVKLA 388 A H+ Y D + T IPA + D+ + + ++ P + G E GP A M VK Sbjct: 222 ATHTTYGDRYAINWDDVTEIPAQRYYDDEEAKQTTTIQIPLYAGVPAEGGPRARM-VKFG 280 Query: 389 AGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALIT 448 RE + + +A+ LG + E+ D L Sbjct: 281 NFREGG--------------SAMDINIARAQENLGAV----YRALEILDELD-------- 314 Query: 449 NIGKGDHTTFVKPNIPATGEFK---GVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTW 504 + A E+K G+G EAPR +H + KDG I +Y+ + STW Sbjct: 315 ----------LNGKTRAEVEYKDGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTW 364 Query: 505 NSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV--DADGNEVV 562 N E+++ G P + EV+ + ++D C +CA HV+ D + E++ Sbjct: 365 N---------FPIVEKAIEGY----PQQYAEVI--MRAYDICASCATHVIVKDEETKEII 409 Query: 563 SVKVL 567 V+ + Sbjct: 410 EVRKM 414 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G + RG+E + + R+P + +R+CG+C+ +HA++ V+A E A I+VP+ AQYIR++ Sbjct: 41 GAIHRGVEFMARERNPIQVIYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSM 100 Query: 95 ILAAHTTHDHIV 106 +L H HI+ Sbjct: 101 VLELERIHSHIL 112 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 16/211 (7%) Query: 1 MSQRITIDP--VTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIV 57 MSQ I+I+ +TR+EGH I E+++G + R E ++ R +A I Sbjct: 1 MSQNISINVNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHIT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RICG+C+ H L+S++AAE AL I +R ++L HI+H Y L A D V Sbjct: 61 CRICGICSCGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLV 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 + S + + +++ + ++ N++ D++ + + G Sbjct: 121 GVPSFVPLIKSHPDVVIRAL---------RMKRLCNELCDILVGRHVHPISAVIGGF--T 169 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALL 208 KLP E++L + L AL Q+D + L Sbjct: 170 KLPSEIDLEEMHKKLLAL--QKDIEVTIELF 198 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 5/88 (5%) Query: 470 KGVGFLEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 +GVG +E PRG+L H+ + GI N ++P+ N+ N D+ ++ Sbjct: 353 EGVGAVEVPRGLLIHHYECDERGIFRNANCIIPTNQNT--HNIELDMLKLVPEIINQSPE 410 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDA 556 + LE++ + ++DPC++C+VH+V+ Sbjct: 411 EIRLSLEML--VRAYDPCISCSVHMVEV 436 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I +++ G V+ A+ +RG E ++ + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC H +S +A++ ++ A+ IR + L AH DH Y L D+V Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFV---V 121 Query: 122 ALQADPTK 129 ++ADP + Sbjct: 122 GIEADPAE 129 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 466 TGEFKGVGFLEAPRG-MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 TGE GVG +EAPRG ++ H+ ++GI+++ +V +T N P N + Q + Sbjct: 379 TGE--GVGIIEAPRGTLIHHYKTDENGIVTDANLIVATTHNHAPINIA--IKKAAQHFIQ 434 Query: 525 TPVADPNKPLEVVRTIHS-FDPCMACAVHVV 554 +K L V + +D C ACA H + Sbjct: 435 ENKEINDKLLNYVEIAYRPYDICQACASHAL 465 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 16/135 (11%) Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI--PATGEFKGVGFLEA 477 S R++ R L ++++ A+ +I K +++KP I P TG KGVG +EA Sbjct: 319 SLFLRVMARVDEIVSLTLLIKDALDAI--DIRK---PSYIKPPIKEPFTG--KGVGIVEA 371 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + I++G + +Y+ V P+ WN G N+++D+ P ++S+VG + +E Sbjct: 372 ARGTLIHEINIENGFVKDYKIVTPTLWNLG--NYDEDMSPAQKSIVGL-----SSDVEAY 424 Query: 538 RTIHSFDPCMACAVH 552 ++ SFD C +C + Sbjct: 425 LSLRSFDVCASCVSY 439 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +IT + R+EG + + E G ++KA GT R I+K + D+ +++ R+CG Sbjct: 1 MKITKTILNRLEGEVELKLEYSKGKIAKAHILGTSNRDFSSILKAKPYLDSIILIPRVCG 60 Query: 63 VCTTTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFY 109 +C H ++SV+A E A + + A +R I L + +HI FY Sbjct: 61 ICGHAHLMASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFY 112 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 157/359 (43%), Gaps = 78/359 (21%) Query: 202 NRVVALLGGKTPHIQNLAVGGVANPIN-LDGLGVLNLERLMYIKSFIDKLSDFVEQ-VYK 259 ++ +A++GG+ PH VGGVA I +D L+ ++ +I + FVEQ + K Sbjct: 129 SKAIAVIGGQYPHTSYAIVGGVACEITEID---------LIKVQHYIAQTLKFVEQNLLK 179 Query: 260 VDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHS 319 V++ V T ++ + E + KN L GY ++ D R I+ Sbjct: 180 VESEVFLK------TEDANSLYDGDLTEILDEIKNSELL---GYGKSYD----RFISFGE 226 Query: 320 DEYLIKG--IQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEV 377 + + KG ++ H+ I D S+ K+ +F K EV Sbjct: 227 NSFFKKGKSVKTKVTHN---------------ISLVDVKESQITSSFAKNVSFKDKYYEV 271 Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GPL+ ++ NK I+ +++K S RI+ R E+ Sbjct: 272 GPLSRAMI----------NKTPLIIDVHKKYGD---------SIFSRILARIY---EISQ 309 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF--LEAPRGMLSHWMVIKDGIISN 495 +L++ LI I ++++P+I + + G G+ +EA RG L H + ++ GII N Sbjct: 310 LLEHS-RGLIKKIDLS-QPSYIEPSIDIS-KLSGSGYSAVEAARGTLIHRVELESGIIKN 366 Query: 496 YQAVVPSTWN--SGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 Y+ + P+ WN G R ++ G ++++VG ++D K E+V SFD C C H Sbjct: 367 YEIITPTQWNLSGGTR---ENHGVSQRAMVG--LSDV-KIAELV--FKSFDVCSVCTTH 417 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I + +IEG +++ + + R +E I+K + DA +I R+CG+C Sbjct: 2 IKIIEKIEGEAKLNFNFKENKIDFVDVEFMSTRNIENILKGKRAFDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFY 109 H +++V+A ES N+ + A+ IR + L +H FY Sbjct: 62 AHLMATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFY 105 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + + + +IEG +D NG + + +RG+EEI+ +DPRDA +I R+ Sbjct: 1 MKRTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGFYRGIEEILVGKDPRDALVITPRV 60 Query: 61 CGVCTTTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFY 109 CG+C H +++VRA E+ + + A+ IR L+ +HI Y Sbjct: 61 CGICNHAHLIAAVRALENGYASAGWEVVLSPKAKAIREFTLSCELLQNHIKWMY 114 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 38/195 (19%) Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + K S K+ ++ + EVGPLA +V ++ + + ++ ++ EVAQL Sbjct: 270 EQKGSMAKAVSYKNRMYEVGPLARGMVSKEPIVKNLHKRYKD--SMMTRVFARIHEVAQL 327 Query: 419 HSTLGRIIGRTVHC----CELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 R + +++ C L D L+ EF+G G Sbjct: 328 LEK-NREMLKSIRVDEPSCTLSDTLK-------------------------LYEFEGTGT 361 Query: 475 LEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 +EA RG L H + +G I+NY+ + P+ WN + + G +++VG+ + Sbjct: 362 VEAARGSLIHRTTVSNGKIANYEIITPTQWNLSHGD-EKEKGIAVKAMVGSQSME----- 415 Query: 535 EVVRTIHSFDPCMAC 549 E +FD C C Sbjct: 416 EADFIFRTFDVCSVC 430 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 7/122 (5%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAW----ASGTMWRGMEEIVKNRDPRDAWMIVQR 59 +I ++ +TR+EGH I +++ G + K S ++ GM ++ R +A I R Sbjct: 7 KIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGM---LRGRSIFEAQHITSR 63 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C+ H+L+S++AAE AL + +R ++L H++H Y L+A D + + Sbjct: 64 ICGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGV 123 Query: 120 TS 121 S Sbjct: 124 PS 125 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 4/115 (3%) Query: 7 IDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 ++PVTRIEGH +I + E G V +RG E+ ++ R + IV RICG+C Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICD 60 Query: 66 TTHALSSVRAAES--ALNIDVPVNAQY-IRNIILAAHTTHDHIVHFYQLSALDWV 117 H L++ +A + N D + A Y +R ++ H H +HFY L+A D V Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV 115 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 5/154 (3%) Query: 1 MSQRITI--DPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIV 57 MS I + D VTR+EGH I E+G + W R E ++ R ++ + Sbjct: 1 MSHTIDVEGDLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RIC +C+ +H ++S++A E+AL + V + +R + L T H++H L+ D V Sbjct: 61 SRICAICSVSHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLV 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKV 151 S L T E+ + L + E T+V Sbjct: 121 GEKSVLPLADTHEDELETVIDLHRLGN--ELTEV 152 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 85/371 (22%) Query: 195 LECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFV 254 ++ R N + ++ G++ H Q L GG++ L L L+RL+ + +L+D + Sbjct: 140 IDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQAL-LDRLVNSWDAVAELADLL 198 Query: 255 EQV------YKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 + ++ +T I+ +PE +G + V E P Sbjct: 199 AVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVGEIP------------------- 239 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSP 368 +S YR + ++EY+++ +AK + ++ E+ Y Sbjct: 240 VSDYRDV---ANEYVVE--HSTAKFARHERES---------------------YMVGALA 273 Query: 369 TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGR 428 F ++ P A + N Y +EVA L +G Sbjct: 274 RFNNNADQLAPRATEIADRFGLDAPVHNP-------YLNNVAQLVEVAHL-------LGE 319 Query: 429 TVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI-PATGEFKGVGFLEAPRGMLSHWMV 487 +V E AL+ + G + + P I P G +G+G +E PRG+L H Sbjct: 320 SVRLIE----------ALLDD-GLTPQSNYHVPEIDPTAG--QGIGAIEVPRGVLFHEYA 366 Query: 488 IKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPC 546 D G ++ V+P+ N G N D+ ++V P + LE++ + ++DPC Sbjct: 367 YDDTGEVTEANCVIPTNQNHG--NIQRDMETLVPTIVDHPEDEIKHSLEML--VRAYDPC 422 Query: 547 MACAVHVVDAD 557 ++C+ H +D + Sbjct: 423 ISCSTHYLDVE 433 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 11/145 (7%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +++TI P++RIEGH + +++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV---- 117 G+C T H L+S +A + VP A +R ++ H H +H + L+ D++ Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPD 121 Query: 118 ------DITSALQADPTKASEMLKG 136 ++ +QA+P A ++G Sbjct: 122 YNPALRNVVGLVQANPELAKMAIEG 146 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 19/120 (15%) Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGP 517 V+ + +G+G +EA RG L H + D G I+ +V + N+ R + V Sbjct: 352 VRTAVTGVKNTRGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNN--RAIDRAVLQ 409 Query: 518 YEQSLV-GTPVADP--NKPLEVVRTIHSFDPCMACAVH----------VVDADGNEVVSV 564 Q L+ G V++ N+ VVR ++DPC++CA H VVD++GN + V Sbjct: 410 SSQKLIHGDNVSEGTLNRIEMVVR---AYDPCVSCATHAIGRMPVQLTVVDSEGNVIREV 466 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 144/357 (40%), Gaps = 74/357 (20%) Query: 203 RVVALLGGKTPHIQNLAVGGVANPI-NLDGLGVLNLERLMYIKSFIDKLSDFVE-QVYKV 260 + +A+ GG+ PH VGGV I +D ++ IK +I++ F E + + Sbjct: 130 KAIAVFGGQYPHTSYAIVGGVVCDITEID---------IIKIKHYIEETIKFFETNLVQA 180 Query: 261 DTA-VIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSY-RPITSH 318 DT + + + + G +P+ + K +L G SY R I Sbjct: 181 DTKDFLVCDNVDKVLKKNG-----DLPDILREIKKKKYLDHG--------KSYDRFIAFG 227 Query: 319 SDEYLIKGIQESA--KHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVE 376 + Y KG H+ D + D S K+ T+ K E Sbjct: 228 ENSYFTKGKSHKTITTHNISIDYVKE---------------QDNLNSLAKNVTYKDKYYE 272 Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGPLA ++ NK+ + +++ N RII R CE+ Sbjct: 273 VGPLARAMI----------NKVPLVKDSHRRYGDNIF---------SRIIARV---CEIP 310 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFLEAPRGMLSHWMVIKDGIISN 495 +L N L+ + + ++++PNI + G +EA RG L H + +++GII N Sbjct: 311 QLL-NHSKELLEKLDLSE-PSYIEPNIDISQINASGESAVEAARGSLIHKVELENGIIKN 368 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 Y+ + P+ WN G +++G +Q++VG K E+V +FD C C H Sbjct: 369 YEIITPTQWNLG-NGTRENLGVSQQAMVGLKDV---KTAELV--FKTFDVCSVCTTH 419 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG +++ + R +E+I++ + DA +I R+CG+C Sbjct: 2 IELIEKIEGEAKLNFSFAGEEIDFVDIEFMTARNIEKILEGKSALDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFY 109 H +++V+A E NI++ A+ IR + L +H FY Sbjct: 62 AHLIATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFY 105 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 16 HLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 HL++ E E +V A G + RG+E + RD IV+R+CG+C+ HA+ + Sbjct: 20 HLKLVVEDET-IVEAIPALGYVHRGLETLASIRDYNQMVYIVERVCGICSCIHAMCYCQG 78 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E+ +N++VP A+Y+R I H H H++ Sbjct: 79 LETMMNVEVPSRAKYLRVIWSELHRIHSHLL 109 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M + + I+P TR EGH ++ ++++ G+V K + S T RG E+ + + A + V Sbjct: 1 MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 R CG+C HA S+V A E A I P + +R + + H H +H + L A D++ Sbjct: 61 RFCGICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEF-LIAPDFI 118 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 17/98 (17%) Query: 454 DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFN 512 D T K I GE G+G EA RG +H I + G I+ Y A+V +TWN Sbjct: 309 DGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWNI------ 362 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 L+G V K E V + ++DPC++CA Sbjct: 363 --------PLIGKAVEAHYKFAEHV--VRAYDPCVSCA 390 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 31/171 (18%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG ++ + + ++ +RG+EEI++ RDP DA +I RICG+C Sbjct: 3 IELLEKIEGEAFLEFQKDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICGH 62 Query: 67 THALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQAD 126 H ++ ES +++ A+ IR I +HI FY Sbjct: 63 AHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFY----------------- 105 Query: 127 PTKASEMLKGVSTWH-LNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + +H LN P +FTKV + I V +L +G W H + Sbjct: 106 ----------LVIFHELNIPYDFTKVHHLI---VTINKLLALFSGQWPHSS 143 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 16 HLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 HL++ IEN V +A + G + RG+E + + RD IV+R+CG+C+ HAL Sbjct: 20 HLKLT--IENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVERVCGICSCLHALCYCE 77 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E + ++VP A+Y+R I H H H++ Sbjct: 78 GVEQIMGVEVPRRAKYLRTIWGELHRMHSHLL 109 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 39 RGMEEIVKNRDPRD-AWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA 97 RG+E+I + R D I +RICG+C TH+ + +A E+A I+VP A+YIR I+L Sbjct: 235 RGIEKISEGRLTYDQVCFIAERICGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLE 294 Query: 98 AHTTHDHIVHFYQLSAL 114 H H+++F +S L Sbjct: 295 IERLHSHLLNFGIVSHL 311 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Query: 5 ITIDPV--TRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I I PV T +E H R+ IE+ ++ +A G +RG+E I++ P ++ ++IC Sbjct: 10 IAIGPVHPTMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 G+C+ H +V E +I+VP A+YIR I+ H H++ F Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLF 115 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MSQR-ITIDPVTRIEGHLRIDCEIENGVV-SKAWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M+ R I +D ++R+EG +D + NG + S R + + R R+ I Sbjct: 1 MTNRSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITA 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C ++ ++S+ A E A +++V + +R + + H++H + L+A D++ Sbjct: 61 RICGICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLG 120 Query: 119 ITSAL 123 S + Sbjct: 121 YESVI 125 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%) Query: 470 KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 +G+ EA RG+L+H +V+ DG IS YQ + P+ WN P GP ++L G P A Sbjct: 304 EGLTLTEAARGLLAHRVVLNDGKISQYQILAPTEWNFHPE------GPLARALHGLP-AG 356 Query: 530 PNKPLEVVRTIHSFDPCMACAV 551 P+ + I++ DPC+ACA+ Sbjct: 357 PDLEWKARLLINALDPCVACAI 378 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 44/67 (65%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 RG+E+ + + DA ++ +R+CGVC+ +HA+S +A ES I+ P+ A+YIR ++L Sbjct: 209 RGIEKTAEGKHFLDAVLVAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEM 268 Query: 99 HTTHDHI 105 ++H+ Sbjct: 269 ERLYNHV 275 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 I +D + R+EGH + IE+G V + R E +V+ R + I RICG+ Sbjct: 6 IHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGI 65 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+++H ++ ++A E ++V + +R +++ +H H + +A D++ + S Sbjct: 66 CSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLGMPSVF 125 Query: 124 ---QADP 127 Q DP Sbjct: 126 PLAQTDP 132 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 + VGF EAPRG L H + + +G +++ + P+ N N D+ + LV A Sbjct: 349 RAVGFTEAPRGALFHDLTLDAEGRVTHASILTPTAQNVA--NLEADMRLLAEKLVADGAA 406 Query: 529 DPNKPLEVVRTIHSFDPCMACAVH 552 + LE+ + + ++DPC++C+VH Sbjct: 407 EDVVRLEIEKLVRAYDPCLSCSVH 430 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 EG + ++G++ +RG+E+ + NR DA +I RICG+C H L++ Sbjct: 12 EGEAELKIYQKDGIIDFVEIFFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLATA 71 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY 109 +A E+ALN+ + A+ +R+I +HI FY Sbjct: 72 KAIENALNLKITKKAEILRDITSGLEIIQNHIKWFY 107 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 9/95 (9%) Query: 12 RIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 +++G +D E+E G W M RG+E+I + + +V+RICG+C+ +H + Sbjct: 25 KLDGERVVDIEMETG-----W----MHRGIEKISEESTFDQSIFVVERICGICSASHPFA 75 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 + A E I+VP+ A+YIR++I H H++ Sbjct: 76 CINAFEDIGEIEVPLKARYIRSLIGELERVHSHLL 110 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 17 LRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 +R++ E+E +V G RG+E + R+ + +RICG+C+ +H + V Sbjct: 21 IRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVVT 80 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 AE AL I+ P AQYIR II H HI+ Sbjct: 81 AEKALGIEAPPRAQYIRPIIAELERIHSHIL 111 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 13/180 (7%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I + E G V A+ + G E+ + + V IC Sbjct: 19 KKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVSTIC 78 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GV H +SV+AA++ ++ A+ IR + AH DH Y L D+V + Sbjct: 79 GVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCGPT 138 Query: 122 ALQADPTKASEMLK-GVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A A+ +LK G L + ++ V KI +L + G HP LP Sbjct: 139 ASPAERNLVGLVLKVGADVGKLVLKKRYSAV--KIFELTS---------GRPSHPVAALP 187 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 470 KGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 +GVG +EA RG+L H D GI+++ +V +T N GP N V QS + Sbjct: 396 EGVGIVEAARGVLIHHYKTDDKGIVTDANLIVATTHNKGPMNIA--VKRAAQSFIKNGKV 453 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVV 554 D V +D C AC+ H + Sbjct: 454 DEGILNLVEIAYRPYDLCFACSTHTL 479 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D V RI G ++ E+GVV A T RG E++V ++P A V RICG+ Sbjct: 7 ITLDKVCRIAGEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICGL 66 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 C +H +++ A E A+ + P N + +R + + H + F ++ Sbjct: 67 CHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVA 115 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 51/209 (24%) Query: 348 TTIPAYDGWSDDGKYSWVKSPTFY-GKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQ 406 +++P Y+ ++ +FY G+ VE GP A M+ Y+ Sbjct: 231 SSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARMIT-------------------YR 271 Query: 407 KLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT 466 + +L LH L RI + L +IL I + TF +P Sbjct: 272 EFRDESL--YGLH--LARIEDTRLAIQRLGEILDE---IRIEEPFRTGDITF-RPG---- 319 Query: 467 GEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 KGVG EAPRG L H++ + ++G + + VVP+ +N + E+ G Sbjct: 320 ---KGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFN---------IPVMEEMAKGL 367 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVHVV 554 V K E V + +DPC+ C HVV Sbjct: 368 SV----KAAEAV--MRLYDPCIPCTTHVV 390 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 17 LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 +R++ E+E + K G RG+E + R+ + +RICG+C+ +H + V Sbjct: 21 IRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVIG 80 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 +E AL I+ P AQYIR II H HI+ Sbjct: 81 SEKALGIEAPPRAQYIRTIIAELERIHSHIL 111 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 25 NGVVSKAWASGTMWRGMEEIVKNRDPRDAW-MIVQRICGVCTTTHALSSVRAAESALNID 83 + +V + + RGME++ ++R + + +RICG+C TH+ + +A E A NI Sbjct: 183 DKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIY 242 Query: 84 VPVNAQYIRNIILAAHTTHDHIVHF 108 VP A+YIR I+L H H++ F Sbjct: 243 VPERARYIRTIMLEVERLHSHLLWF 267 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 12/113 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS+++ IDPVTRIEGH ++ +++ V A +RG E+ V+ +A M +QR Sbjct: 1 MSRKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQR 60 Query: 60 ICGVCTTTHALSSVRAAESAL------NIDVPVNAQYIRNI-----ILAAHTT 101 ICG+C +H L +A + + I V A+ +R + +L +HTT Sbjct: 61 ICGICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTT 113 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 19/197 (9%) Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 K+ ++K +V VGPL M V + Q L A + T N LH+ Sbjct: 286 KFPYLKELGREQGSVRVGPLGRMNVTKSLPTPLAQEALERFHAYTKGRTNNM----TLHT 341 Query: 421 TLGRIIGRTVHCCEL-QDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 R I +H E+ +++L + ++ K D P TGE GVG +EAPR Sbjct: 342 NWARAI-EILHAAEVVKELLHD------PDLQK-DQLVLTPPPNAWTGE--GVGVVEAPR 391 Query: 480 G-MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G +L H+ + G I+ VV +T N+ + N V + +G + + Sbjct: 392 GTLLHHYRADERGNITFANLVVATTQNN--QVMNRTVRSVAEDYLGGHGEITEGMMNAIE 449 Query: 539 T-IHSFDPCMACAVHVV 554 I ++DPC++CA H + Sbjct: 450 VGIRAYDPCLSCATHAL 466 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQR 59 MS+ IT++ V RI G ++ ENG V A T RG E++V ++P A V R Sbjct: 1 MSE-ITLNKVCRIAGEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 ICG+C +H ++ A E+A+ I P N +R + + H++ F ++ Sbjct: 60 ICGLCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAG 113 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 52/213 (24%) Query: 349 TIPAYDGWSDD--GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQ 406 T+P Y+ D+ K S + G+ VE GP A M +Y+ Sbjct: 229 TMPYYEYRKDNPHSKESTTLIAFYGGEKVEAGPRARM-------------------KVYR 269 Query: 407 KLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT 466 + T ++L LH+ R+ T+ L++IL + K D F NI Sbjct: 270 EFTDSSL--YGLHT--ARVQDTTLALIRLEEILDSI---------KMDEP-FRTKNI-VF 314 Query: 467 GEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 G KGVG EAPRG L H + + D G + + + +VP+ +N + E+ G Sbjct: 315 GPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFN---------IPVMEEMAKGL 365 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVHVVDADG 558 V K E V + +DPC+ C HVV G Sbjct: 366 SV----KAAEAVMRL--YDPCIPCTTHVVRLGG 392 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G + RG+E+ ++R +V+RICG+C+T+HA V A E LN++VP A Y+R + Sbjct: 187 GFVHRGIEKAAESRSFFRDIFLVERICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTL 246 Query: 95 ILAAHTTHDH 104 + H H Sbjct: 247 VAELERIHSH 256 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ ++ A + G RG+E +++ A M+ ++ICG+C+ +H +SVR A Sbjct: 30 RVRFFVEDEIIKDAEITIGVNHRGIERVMEGLPVEKANMLTEKICGICSNSHTWNSVRTA 89 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 E L ++VP A YIR I+ H H+++ Sbjct: 90 EKGLGVEVPDRAVYIRVIVGELERLHSHLLYL 121 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 25 NGVVSKAWASGTMWRGMEEIVKNRDPRDAW-MIVQRICGVCTTTHALSSVRAAESALNID 83 + VV + + RGME++ ++R + + +RICG+C TH+ + +A E A I Sbjct: 183 DKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDAAGIY 242 Query: 84 VPVNAQYIRNIILAAHTTHDHIVHF 108 VP AQYIR I+L H H++ F Sbjct: 243 VPERAQYIRTIMLEVERIHSHLLWF 267 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 42/283 (14%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGV--VSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++ + I+P+ RI+ L I ++ V+ A+A+ M+RG E ++N+ D M+ R Sbjct: 14 TKPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRNKPGPDVIMLSSR 73 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA--AHTTHDHIVHFYQLSALDWV 117 CG+C H A E A + P + IILA A T+D H L DW Sbjct: 74 ECGICGEHHQFIERIAQEMAQGGNAPPPLG-LETIILANDAAMTYDATAHLTALGGPDWS 132 Query: 118 DITSALQ----------ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIF 167 + + A T S++ + + + +P + K+K + Sbjct: 133 SLFFKVAGYFPSQIYEIAQQTPLSKVAQESQAFPMGAPTQLEMAGVKLKTVS-------- 184 Query: 168 ANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPI 227 L + I A++L+ R + L + PH + GG+ P Sbjct: 185 ----------DLMDALVPIIGAYFLEGAYSWRILHEAELLYYLRVPHPITMVPGGIGVPA 234 Query: 228 NLDGLGVLNLERLMYIKSFIDKLSDFVEQ--VYKVDTAVIAAF 268 ++ NL+R Y + +D + ++Q VY+ T +A + Sbjct: 235 TVE-----NLQR--YFQRMVDGTAWLMKQMAVYEYLTLFLADY 270 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 54/128 (42%), Gaps = 37/128 (28%) Query: 466 TGEFKGVGFLEAPRGMLSHWMVIKDGI-----ISNYQAVVPSTWNSGPR--NFNDD---- 514 TG GVG EAPRG H V G N Q + P+T NSGPR N DD Sbjct: 592 TGVALGVGMKEAPRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYDDGIQT 651 Query: 515 ---------VGPYEQSLVGTPVADPNKP---------------LEVVRTIHSFDPCMACA 550 G +E+ L+G P D N P E +T+ SFDPC C Sbjct: 652 IKPASPTHGAGTFEEVLMGNP--DYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCFVCG 709 Query: 551 VHVVDADG 558 VH+V +G Sbjct: 710 VHMVLPNG 717 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAW-MIVQRICGVCTTTHALSSV 73 G R+ + E VV + + RG+E++ ++R + I +RICG+C H+ + Sbjct: 194 GQFRVFLDGEK-VVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICGYAHSCAYC 252 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF---YQLSALDW 116 +A E AL I+VP A YIR ++L H H+++ L+ DW Sbjct: 253 QAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQR 59 MS+ + IDP+TR+EG R+ E V R E ++K + P V R Sbjct: 1 MSE-VRIDPLTRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVAR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C + L++V A ES + VP + + +R I H H + L D+ + Sbjct: 60 ICGLCPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYER 119 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQL---GIFANGYWGHPA 176 S L+ K + G+ + K N I +L+ + I G++ P+ Sbjct: 120 ESFLELMREKRELLEAGL---------QIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPS 170 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 5 ITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D + R+EG ++ + ++GV R E I + +A + RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSF 67 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ H L++V AAE A+ +V Q +R ++ H +H Y L D++ ++ L Sbjct: 68 CSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPL 127 Query: 124 QADPTKASEM-----LKGVSTWHLNS 144 + E+ LK + +W ++ Sbjct: 128 KMLDKYKKEINIALDLKNLGSWMMDE 153 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 24/93 (25%) Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWN----------SGPRNFNDDVGPYEQ 520 GV EAPRG+L + + +KDG ++ + P+ +N +++NDD P Sbjct: 348 GVSTTEAPRGILVYALEVKDGRVAYADIITPTAFNLAMMEVHVRMMAEKHYNDD--PERL 405 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV 553 L+ V + ++DPC++C+VHV Sbjct: 406 KLLAEMV------------VRAYDPCISCSVHV 426 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 RG+E +V+ RD D + RICG+C+ H+L +A E ++I+VP A Y+R+I Sbjct: 43 RGLERLVEKRDFIDFAHVADRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAEL 102 Query: 99 HTTHDHI 105 H HI Sbjct: 103 SRIHSHI 109 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 28/197 (14%) Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS+ K + GK + VG LA +L+K + + L+ + +K+ + +++ Sbjct: 241 YSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLD---SYKEKIKSGHV----IYNN 293 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 L + I V+ E+ + + I +G + +P+ +GE G+G++EAPRG+ Sbjct: 294 LAQAI-ELVYALEVASKIAEEL------ISEGIEKSTCEPS-EKSGE--GIGYVEAPRGV 343 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLVG--TPVADPNKPLEVV 537 L H I++ I + P+ +N G ++ +D +++ G + +K EVV Sbjct: 344 LVHHYRIENERIVWSNTITPTAFNQGMMEKSLLEDA----RNMFGKESETTLKSKLEEVV 399 Query: 538 RTIHSFDPCMACAVHVV 554 R +FDPC++C+VHVV Sbjct: 400 R---AFDPCISCSVHVV 413 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQRICGV 63 I +D TR+EG + + IENG V A R E + R D + RIC + Sbjct: 6 IELDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAI 65 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H+++SVRA E+AL I+V + + +R + L H +H Y L+ D A+ Sbjct: 66 CYASHSIASVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAI 125 Query: 124 QADPTKASEMLK-GVSTWHLNSPEEFTKVQNKIKDLVASGQL-GIFAN-GYWGHPAMKLP 180 +K E++K G++ L N I++ +A ++ GI G +G + P Sbjct: 126 SM-VSKYGELIKEGLTIKALG---------NMIRETIAGREIHGINVKPGGFG----RYP 171 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPH 214 E L +A + +AL R A R+V + + P Sbjct: 172 SERELEKIAKHARAL--VRFARRIVNIFATQEPR 203 >UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6S7_MAGSA Length = 367 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 40/197 (20%) Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 DDG Y P G E GPLA R+S + + +++ Y GN L Sbjct: 208 DDGAYR--TRPDSAGIVFETGPLA---------RQSRRPLMGLLMSQY----GNGL---- 248 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 + R++ E++D++Q+ GD A + G+G ++A Sbjct: 249 MPRFSARMMEMASALREVEDLVQDL---------SGDSGGLPM----ARHDGSGLGVVDA 295 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG+L+H + +++G++S Y+ + P+ W NF+ D GP Q L G DP ++ Sbjct: 296 ARGLLAHRVELREGLLSAYRILAPTEW-----NFHPD-GPLAQGLRGMSGPDPEGRAALL 349 Query: 538 RTIHSFDPCMACAVHVV 554 S DPC+ + VV Sbjct: 350 AA--SLDPCVPFRIEVV 364 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 GH R+ + EN ++ + + RGME++ + R + + R+CG+C H+ + Sbjct: 195 GHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 + E+A+ I VP AQ IR I+L H H+++ Sbjct: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G RG+E I R+ +V+RICG+C+ +H + RA E I+VP A+YIR I Sbjct: 43 GYNLRGLEWIAMRRNYIQLLYLVERICGICSFSHNHTYTRAVEEMAGIEVPERAEYIRAI 102 Query: 95 ILAAHTTHDHIVHF 108 I H H+++ Sbjct: 103 IGELERIHSHLLNL 116 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 41/72 (56%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G + RG+E++V+ +D + +RICG+C+ H+L E + ++VP A+Y+R I Sbjct: 39 GFIHRGLEKLVEKKDIHQFIYVAERICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVI 98 Query: 95 ILAAHTTHDHIV 106 + H H++ Sbjct: 99 LHELSRIHSHLL 110 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 GH R+ + E +V + + RGME++ + R + + R+CG+C H+++ Sbjct: 197 GHFRLFVDGEQ-IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 + E+AL I+VP A IR+I+L H H+++ Sbjct: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 13/178 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I + + R+EG +D I++G + K R E+ ++ R+P V RICG+ Sbjct: 7 IEVPILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAVARICGI 66 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C + RA +SA +I +R ++ H +H + L+A D++ SA+ Sbjct: 67 CPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFLGYRSAI 126 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQL---GIFANGYWGHPAMK 178 + E+++GV HL N I L+ + G+ G++ P +K Sbjct: 127 EMAKDYPKEVVRGVKLQHLG---------NDILKLLGGRSVHPNGMKVGGFYKAPLVK 175 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%) Query: 13 IEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 ++G L D E+E G V + W D A + +R+CG+CT H+ Sbjct: 24 LDGELVKDVELEAGYVHRGLEKKFEW----------DYNKAAYLAERVCGICTQHHSTCF 73 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 A ES + +++P A IRNI+L H H++ Sbjct: 74 CLAVESTMKLEIPRRAAVIRNIMLELERLHSHLL 107 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 8/96 (8%) Query: 461 PNIPATGEFKGVGFLEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 P P GE G+G++EAPRG+L H+ + + G I+ + P+ +N G ++ YE Sbjct: 325 PIEPQEGE--GIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIM----ELSLYE 378 Query: 520 QSLVGTPVADPNKPLEVVR-TIHSFDPCMACAVHVV 554 ++ +D L+ + T+ +FDPC++C+VH+V Sbjct: 379 EARKRYGSSDETTFLQKLEETVRAFDPCISCSVHIV 414 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 24/215 (11%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRG---MEEIVKNRDPRDAWMIVQRIC 61 I I+ TR+EG+ + IENG V ++ G E + R D + RIC Sbjct: 4 IEIEAFTRVEGNGGAEILIENGEVKDVKVK--IFEGPRFFELLTLGRHYWDVPDLEARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 +C +H+++SV E AL ++VP +R + L H +H Y L A D Sbjct: 62 AICYLSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYAD 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ---LGIFANGYWGHPAMK 178 A++ + +G++ N I++L+ + + I G+ +P ++ Sbjct: 122 AIRMASKHGEVVKEGITIKAFG---------NYIRELLGGREIHGINIKPGGFGRYPTIE 172 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTP 213 L + +AL R A RVV + + P Sbjct: 173 -----ELEQIESQCEAL--LRPARRVVNIFAEQEP 200 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRG---MEEIVKNRDPRDAWMIVQR 59 + I ++ + R+EGH I+ +E V +A ++ G E I+ + + I R Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLR--IYEGPRFFERILIGKSYYEVPDITAR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 IC +C + ++S RA E A+ I V + +R + L + H H +H + L+ D++ Sbjct: 60 ICSICPDPYQVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGY 119 Query: 120 TSAL 123 A+ Sbjct: 120 KDAI 123 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G RG++ I R+ + +RICG+C+ +H + RA E A I+VP A+YIR I Sbjct: 43 GYNLRGLQWIAYRRNYVQIMYLAERICGICSFSHNHTYTRAVEEAAGIEVPERAEYIRAI 102 Query: 95 ILAAHTTHDHIVHF 108 I H H+++ Sbjct: 103 IGELERVHSHLLNL 116 >UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF90_METS5 Length = 379 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%) Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G+G+LE+ RG+L H + +KD ++ Y+ + P+T+N+ P G E +++G PV + Sbjct: 288 GIGYLESIRGVLVHQVKVKDKVV-EYRVIQPTTFNASPG------GALENAVLGIPVRNY 340 Query: 531 NKPLEVVRTIHSFDPCMACAVHV 553 P E+ + S D C V V Sbjct: 341 RNPWEISLAVSSLDSCFITNVEV 363 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 27 VVSKAWASGTMWRGMEEIVKNRDPRDAW----MIVQRICGVCTTTHALSSVRAAESALNI 82 VV + + RG+E++ + PR + + +RICG+C H++S + E A I Sbjct: 193 VVDVEYNGFHVHRGIEKLAEA--PRFNYQKIPFLAERICGICGFVHSVSYTMSVERAAKI 250 Query: 83 DVPVNAQYIRNIILAAHTTHDHIV 106 DVP A+YIR+IIL H H++ Sbjct: 251 DVPERAEYIRSIILEIERLHSHLL 274 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 27/163 (16%) Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 +++ + L GN L L R + R C L + L+ +GD + Sbjct: 240 LLSALKPLHGNGL--------LRRTVARLTELCRLFEALR-----------QGDDGALLA 280 Query: 461 PNIP--ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 P A + GVG +EA RG L H + ++ IS+Y + P+ WN P+ G Sbjct: 281 ALQPFSAAQDGMGVGAVEAARGRLLHRVSLEGQQISHYAILAPTEWNFHPQ------GVV 334 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEV 561 Q L G L+ I S DPC+ A+ VV+AD E+ Sbjct: 335 AQGLAGLQGDRQAVLLQAHHVIESIDPCVGYALTVVEADEEEL 377 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 10/159 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRI 60 + R+T+ + R+EG R+ + +G V A + R E ++ RD R+ I RI Sbjct: 9 TTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPPDITSRI 68 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S+ A E A + +R ++ H +H Y L A D++ + Sbjct: 69 CGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGAS 128 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLV 159 A++ ++ +G++ K N I D++ Sbjct: 129 DAIELARIARPDVERGLT---------LKKAGNAILDMI 158 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 38/75 (50%) Query: 32 WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYI 91 +A G RG+E + R+P + RICG+C HAL +A E +I+VP A Y+ Sbjct: 39 FAPGRAHRGIEWMGMRRNPVQILHLCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYV 98 Query: 92 RNIILAAHTTHDHIV 106 R II HI+ Sbjct: 99 RTIIAEFERIQSHIL 113 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS I I P+TR+EGH + ++ V + A R E +++ + R+ I+ R Sbjct: 1 MSNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 IC +C+T H ++++ A E A I V R +I+ H +H + L+ D + Sbjct: 61 ICSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFN- 119 Query: 120 TSALQADPTK-ASEMLK 135 +A AD K A ++LK Sbjct: 120 -AAGFADLAKLAPDLLK 135 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 +G E+I + A + +RICGVC +HA +A E I++P A++IR I++ Sbjct: 212 KGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMEL 271 Query: 99 HTTHDHI 105 ++HI Sbjct: 272 ERIYNHI 278 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 44/80 (55%) Query: 27 VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPV 86 +V+ + G RG+E+ + R +++RICG+C+ TH+ + ++A E + +P Sbjct: 30 IVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICSHTHSTAYIQAVEEIAGLTIPP 89 Query: 87 NAQYIRNIILAAHTTHDHIV 106 A YIR+++ H H++ Sbjct: 90 RANYIRSLVGELERIHSHLL 109 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ +V A + G RG+E I++ A + +++CG+C+ H +S R Sbjct: 37 RVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVG 96 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 E AL I++P A Y+R + H H+++ Sbjct: 97 EGALGIEIPERAVYLRVLAEELERLHSHMLYL 128 >UniRef50_P40597 Hydrogenase expression/formation protein hoxV n=4 Tax=Azotobacter RepID=HOXV_AZOVI Length = 348 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 439 LQNQYSALITNIGKGDHTTFVKPNIPATGEF---KGVGFLEAPRGMLSHWMVIKDGIISN 495 ++ AL+ + + P PA +GVG RG L H + + DG + Sbjct: 234 IEQHVGALLRRTAQAIDSLQSPPAPPAVAGLAAGEGVGLARTARGWLLHRVCLDDGAVGT 293 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 +Q + P+ W NF+ D GP + L G VA + I + DPC+A V +V Sbjct: 294 WQLLAPTDW-----NFHAD-GPLRRRLCGVRVAAGEVEALLRELILALDPCVAFEVKIVH 347 Query: 556 A 556 A Sbjct: 348 A 348 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 15/131 (11%) Query: 12 RIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 +IEG +ID V + W + G+EE +KN++ DA +I R+CG+C +H + Sbjct: 18 KIEGDKKID-----FVQIEFW----QYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHA 68 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY------QLSALDWVDITSALQA 125 +V+ E + AQ R + +HI FY Q+ +++ + Sbjct: 69 TVKVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSS 128 Query: 126 DPTKASEMLKG 136 +KA +L G Sbjct: 129 KISKAIAILAG 139 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 34/200 (17%) Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 Y ++ S K+ + + EVGPLA M++ + + ++ +IY ++ Sbjct: 222 YKNVKEERNKSLSKNALYNNEYYEVGPLARMIINKNKNIKKIYDIYSD--SIYTRMCARI 279 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 E L + + + V CE +F+KPN+ K + Sbjct: 280 YEPLLLLDYIEQKLSE-VDLCE---------------------PSFLKPNVRNG---KAI 314 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +EAPRG L H + IK+ I Y VVP+ +N ++ P + +L+ +A Sbjct: 315 VAVEAPRGSLIHEISIKNEKIDYYNIVVPTQFNLASST-KENPSPAQAALMNEDIA---- 369 Query: 533 PLEVVRTIHSFDPCMACAVH 552 V FD C C H Sbjct: 370 --YVDSVFRCFDICAVCMSH 387 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVV-SKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++I ++R+EG I E+E G V S R E + R + I RICG+ Sbjct: 10 LSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPPDITARICGI 69 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C + +SS A E N+ +P N +R ++ H +H + L A ++ S + Sbjct: 70 CPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAPGFLRYPSLM 129 Query: 124 Q 124 + Sbjct: 130 E 130 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 RG+E+ V ++ + +++RICG+C+ H S E L++DVP A YIR +I Sbjct: 46 RGIEQAVLSKSYLENIYLLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGEL 105 Query: 99 HTTHDHIV 106 H H++ Sbjct: 106 ERIHSHML 113 >UniRef50_Q2RV77 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV77_RHORT Length = 406 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 462 NIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQS 521 + A +GVG +EA RG+L H +V+++G ++ ++ + P+ WN P+ G Sbjct: 313 GVSARSSGEGVGMVEAARGLLIHRVVVREGRVARWRILAPTEWNLHPQ------GALASL 366 Query: 522 LVGTPVADPNKPLEVVR-TIHSFDPCMACAVHVV 554 L+G PV+ + + + + DPC+ C + + Sbjct: 367 LIGCPVSGTEEACLLAHWLVLALDPCVPCVITAI 400 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 G RG++ I R+ + +R+CG+C+ +H + VRA E I+VP A+YIR I Sbjct: 42 GYNLRGVQWIGMRRNYVQIMYLAERMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVI 101 Query: 95 ILAAHTTHDHIVHF 108 + H H+++ Sbjct: 102 VGELERIHSHLLNL 115 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%) Query: 39 RGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA 97 RG+E+ + R + +RICG+C H++S A E ++D+P A+YIR ++L Sbjct: 249 RGIEKTGEGRLTYNQVLFLAERICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLE 308 Query: 98 AHTTHDHIVHFYQLSALDWVDITSAL 123 H+H++ WV I + L Sbjct: 309 LERIHNHLL---------WVGIAAHL 325 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ I P+TR+EG R+ +I +G V +A R E ++ R + I RI Sbjct: 4 TRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITARI 63 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S++ A E ++ V +R +I H +H + L D++ Sbjct: 64 CGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYD 123 Query: 121 SALQ 124 SAL Sbjct: 124 SALH 127 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%) Query: 471 GVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 G G EAPRG+L H + + +G I + + V P+ N P +D+ + + +++ Sbjct: 343 GYGVTEAPRGLLYHRYTIDHNGTILDAKIVPPTAQNQRP--IEEDLRGVVERFMN--LSE 398 Query: 530 PNKPLEVVRTIHSFDPCMACAVHVV 554 P L R I ++DPC++CA H + Sbjct: 399 PELALRCERAIRNYDPCISCATHFL 423 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSV 73 + R+ CE E ++ + RG+E++ D + +R+CG+C H+ Sbjct: 190 AYFRLFCEGEE-IIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYC 248 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 A E A I++P A+YIR+I++ H H++ Sbjct: 249 MAVEDAAGIEIPPRAKYIRSIMMELERLHSHLL 281 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%) Query: 13 IEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 ++G +D EIE G V RG+E+I++ + + +R+CG+C+ H ++ Sbjct: 27 LDGEKPVDAEIEMGYVH---------RGIEKIMEGKHCHKGIHLAERVCGICSYVHTMTF 77 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV--HFYQLS 112 E I++P A+Y+R + H H++ Y LS Sbjct: 78 AECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLS 119 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 17 LRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 +R+ CE V K G M +G+E I++ R ++ + +R+CG+C+ H + + Sbjct: 22 VRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMFLAERVCGICSVVHNMVFIET 81 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E +I VP A Y+R ++ HI+ Sbjct: 82 MEEISDIPVPPRAAYLRVVVNELDRMASHIL 112 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 16 HLRIDCEIENGVVSKAWASGTMWRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSVR 74 L +D E G + + + RG+E++ ++ D M+ +RICG+C H+L+ + Sbjct: 189 RLYVDGEFVRGCEYRGF---MVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLAFCQ 245 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDH 104 A E+ + VP A++IR I+L H H Sbjct: 246 AVENGAGVIVPPRAEFIRTIMLEIERLHSH 275 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 9/97 (9%) Query: 12 RIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 ++EG + +D EI+ G + +A +E+ R +V+R CG+C+ H+ + Sbjct: 23 QLEGEMVVDAEIKIGFIHRA---------IEKSATKRTFIRDLGLVERTCGICSFHHSWA 73 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A E A ++VP A+YIR + H H+++ Sbjct: 74 YCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYL 110 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 32/52 (61%) Query: 45 VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIIL 96 V+ P DA ++V+RI G +HA++ A E ALNIDVP QY R I+L Sbjct: 88 VRGLSPEDALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIML 139 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Query: 39 RGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA 97 RG+E++ ++ + + + +RICG+C H+ + +A E A I++P+ A++IR++ L Sbjct: 200 RGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLE 259 Query: 98 AHTTHDHIV 106 H H++ Sbjct: 260 LERLHSHLL 268 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 10 VTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH 68 +TR+EG I ENG + + R +E I+K ++ + RICG+C + Sbjct: 8 LTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRICGICPVAY 67 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 +S V+A E A + V + +R + H VH + L D+++ S + Sbjct: 68 QISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVFEV 124 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 23 IENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALN 81 +E+ VV K G R + ++++ RD + +RICG C + HALS R+ E + Sbjct: 166 VEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERICGFCNSHHALSFARSVEDIAS 225 Query: 82 IDVPVNAQYIRNIILAAHTTHDHIV 106 ID+P A+ R ++ H++ Sbjct: 226 IDIPPKAKLARTLLCEMERIQSHLL 250 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ + +D + R+EG + +I +N V R E ++ R +A I RI Sbjct: 3 TKTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITSRI 62 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S+V+A E L + V + +R ++ H +H + L A D++ Sbjct: 63 CGICPIAYMMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYD 122 Query: 121 SAL 123 S + Sbjct: 123 SVI 125 >UniRef50_P28153 Hydrogenase expression/formation protein hupK n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPK_RHILV Length = 370 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%) Query: 471 GVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV-A 528 G G +E RG L H + I DG ++ Y+ + P+ WN P GP+ ++L+ +PV A Sbjct: 286 GYGAVECARGRLYHQIEIGGDGRLAAYRILAPTEWNFHP------AGPFVETLLSSPVGA 339 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDA 556 D + R FDPC+A ++V +A Sbjct: 340 DEAAVRSISRLAVLFDPCVAFEINVREA 367 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +T+ +TR+EG + + +GVV + R E ++ R + I R+CG+ Sbjct: 8 LTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDITARVCGI 67 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C + +S+ A E A + + +R ++ H H +H Y L A D++ A+ Sbjct: 68 CPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAI 127 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 4/138 (2%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRI 60 S+ +++ +TR+EG + I + V++A S R E +++ R + + RI Sbjct: 8 SRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTSRI 67 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV--- 117 CG+C + LS+ RA E A +DV +R ++ +H Y L A D++ Sbjct: 68 CGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLGHD 127 Query: 118 DITSALQADPTKASEMLK 135 D+ +++P L+ Sbjct: 128 DVIGMSRSEPAHVRRGLR 145 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 40/75 (53%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 +G+E++++ +D + IV+R+CGVC +HAL+ A E ++VP R ++ Sbjct: 227 KGIEKLLEGKDLEEGLKIVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAEL 286 Query: 99 HTTHDHIVHFYQLSA 113 ++H+ L A Sbjct: 287 ERLYNHVGDIGNLCA 301 >UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=6 Tax=Rhodopseudomonas palustris RepID=Q07S92_RHOP5 Length = 370 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%) Query: 471 GVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 G+ +E RG L H + + + G++S + + P+ WN PR GP ++L + D Sbjct: 286 GLAAVECARGRLHHLVALDRQGLVSQFAILAPTEWNFHPR------GPLFRALQNLALRD 339 Query: 530 PNKP-LEVVRTIHSFDPCMACAVHVVDA 556 + V R + +FDPC+A +V + +A Sbjct: 340 DDADRARVARLVAAFDPCVAFSVTIAEA 367 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 27 VVSKAWASGTMWRGMEEI-VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVP 85 +V+ +G RG+E++ KN RD + IV R+CG+C HA VRA E L++ Sbjct: 39 IVNVEINTGYNHRGIEKLGEKNTFYRDIF-IVARVCGICNLVHANCYVRALEEILDMHPN 97 Query: 86 VNAQYIRNIILAAHTTHDHIV 106 A+Y+R + + H H++ Sbjct: 98 ERAKYLRVLAMEFERVHSHML 118 >UniRef50_Q21QY7 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QY7_RHOFD Length = 391 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 43/191 (22%) Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGR 424 + PT+ G+ E GP + +L + A HS R Sbjct: 243 AQQPTWLGQCFENGP-------------------------WTRLRHRQTQTATPHSAWTR 277 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 + R + E+ SA ++G+ + G + + + E RG+L H Sbjct: 278 LSTRWLELIEI-----AAASAPTQSLGR---VALLATGAMKLGPGQALAWCEMARGLLLH 329 Query: 485 WMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 W+ + G + +YQ V P+ W NF+ D G +++ P D L +F Sbjct: 330 WVQLDAQGAVQDYQVVAPTEW-----NFHPD-GALARAVAALPAGD---TLGASTLAAAF 380 Query: 544 DPCMACAVHVV 554 DPC+ C + V Sbjct: 381 DPCVLCTIKQV 391 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 23 IENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALN 81 +E+ VV KA G R + ++++ RD + +R+CG+C HALS A E+ Sbjct: 133 VEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVENIGQ 192 Query: 82 IDVPVNAQYIRNIILAAHTTHDHIV 106 + VP A IR +I H++ Sbjct: 193 VTVPKRADIIRTMICEMERIQSHLM 217 >UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XQ1_RHOPB Length = 368 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%) Query: 471 GVGF--LEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 GVGF +E PRG L H + + G + Y + P+ WN F D GP+ +L PV Sbjct: 264 GVGFCAVETPRGRLHHLVRLAPQGTVQRYLILAPTEWN-----FAAD-GPFAAALDKFPV 317 Query: 528 ADPNKPLE--VVRTIHSFDPCMACAVHV 553 + + + R +DPC+ CA+ V Sbjct: 318 GEDGDAAKSAIARLASLYDPCVGCAIEV 345 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Query: 16 HLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 + RI+ + E VVS +G + RG+E + R+ ++ +R+C +C+ +H + A Sbjct: 20 YFRIEVDGEK-VVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCSNSHPQTYCMA 78 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLK 135 ES + VP AQY+R I A T H + ++ L + +L +A E+++ Sbjct: 79 LESITGMVVPPRAQYLRVI---ADETKRVASHMFNVAILAHIVGFDSLFMHVMEAREIMQ 135 >UniRef50_Q2BN45 Putative hydrogenase expression/formation protein hupK n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN45_9GAMM Length = 380 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%) Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD--HTTFVKPNIPATGEFKG 471 E+ +H R + + ELQ+I Q I GK V ++P G Sbjct: 251 ELLAMHPVAQRFLALVL---ELQEIPQR-----IARFGKEQLGKEALVFSDLP------G 296 Query: 472 VGFLEAPRGMLSHWMVIKD----GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 + ++A RG L+H + I + IS YQ + P+ WN P G +Q L G V Sbjct: 297 MSHVDAARGRLTHRVKITEQHGEARISEYQVIAPTEWNFHPE------GALKQMLKGVKV 350 Query: 528 ADPNKPLEVVRTIHSFDPCMACAVHVVD 555 + R + + DPC+A V VV+ Sbjct: 351 SLVQARELTERLVLAIDPCVAYKVEVVE 378 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 GH R C+ E VV G +G+E +++ A IV R+ G T ++L+ R Sbjct: 166 GHFRFHCQGE-AVVRLEQRLGYQHKGIEGLLQGAPLDKAARIVARVSGDSTVAYSLAFAR 224 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 A E+A +VP A ++R ++ +H+ Sbjct: 225 AVEAATGCEVPARAHWLRGVMAEMERVANHV 255 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 13 IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 + G +D IE V KA+ G + +G+E+I++NR + R+C + + T+ + Sbjct: 41 VPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIVYTDRMCYLASITNNEA 100 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 A E L I P AQYIR I+ H++ Sbjct: 101 YCGAVEKLLGITPPERAQYIRVILAELSRIQSHLL 135 >UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83WU9_THIRO Length = 389 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 15/89 (16%) Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 A+G G+G + A RG+L+H + ++DG + +Y+ + P+ WN PR G ++L Sbjct: 302 ASGNGVGLGRVFAARGLLAHLVRVEDGRVRDYRILAPTEWNFHPR------GVVARAL-- 353 Query: 525 TPVADPNKPLEVVRT-----IHSFDPCMA 548 A P P E VR I + DPC+A Sbjct: 354 --EALPPGPEEQVRRQAELLITAIDPCVA 380 >UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TW35_METKA Length = 205 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 25/100 (25%) Query: 471 GVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV-- 527 G G +EAPRG L H + + DG + NY+ + + N P E+S+VG V Sbjct: 63 GTGVIEAPRGTLVHRVSVGSDGKVFNYEIITSTNLNHAP---------IEESMVGERVYV 113 Query: 528 ----ADPNKPL---------EVVRTIHSFDPCMACAVHVV 554 A + L + R SF+PC +CA H + Sbjct: 114 DEKLAAAKRQLSESERFLLGDACRAARSFNPCNSCAPHAI 153 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 15 GHLRIDCEIENGVVSKAWASGTMW---RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 GH R E + KA +W RG+E++ R + +R+ G T HAL+ Sbjct: 165 GHFRFSVVGETVLNLKA----RLWFVHRGLEKLFAGRAVAAGVELAERVSGDTTVGHALA 220 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 VRA E A + + AQ IR I+L ++HI Sbjct: 221 YVRAVEDASGVTLDPAAQRIRAILLELERLYNHI 254 >UniRef50_UPI0001874346 putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI0001874346 Length = 454 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 56 IVQRICGVCTTTHALSSVRAAESALNI-DVPVNAQYIRNIILAAHTTHDHIVHFY 109 I +R+CG+C H L+ VRA E I D+P AQ IR +LAA +T D++ + Sbjct: 63 ITKRLCGLCPVVHHLAGVRAVEDLYGISDIPRTAQLIRE-LLAAGSTLDNLATKF 116 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 16/104 (15%) Query: 453 GDHTTFVKP-----NIPATGEFKGVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNS 506 GDH K N G GVG ++ PRG+L H + DGII++ Q + P+ N Sbjct: 321 GDHVCDPKAVTAIENADFEGHRSGVGMIDGPRGLLVHRYTAGADGIITDCQIMTPTAQNE 380 Query: 507 GPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 P+ ++ + D + V ++I + DPC+ C+ Sbjct: 381 ----------PWLTRMLTEQLCDGGETAGVEKSIWAADPCLPCS 414 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 43.5 bits (101), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Query: 10 VTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH 68 + R+EG +D E+ +G + R E+ ++ R+ ++ +V RICG+C + Sbjct: 14 LARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGICPVAY 73 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +S+V A E + +R + H +H + L+A D++ +SA Sbjct: 74 QMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSA 127 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 GH R + +++ G + +G+E ++++ + + RI G T HA + + Sbjct: 191 GHFRF-LAVGEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDSTVAHAWAFAQ 249 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 A E A IDVP A +IR I+ +HI Sbjct: 250 ACEYAGQIDVPRRASFIRAILCERERIANHI 280 >UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NIT9_CORDI Length = 347 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 28/40 (70%) Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNII 95 IV+R+CG+C H L+ VRA ++ ++VP +AQ +R ++ Sbjct: 50 IVKRLCGLCPVAHHLAGVRALDALCGVEVPESAQLVRLLL 89 >UniRef50_Q0A725 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A725_ALHEH Length = 379 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G G ++ RG+L HW+ + G +++Y V P+ WN PR V + G P Sbjct: 300 GCGIVDTARGLLLHWVRLHRGQVADYAVVAPTEWNFHPRGVL--VSGLRERPGGGPAEGV 357 Query: 531 NKPLEVVRTIHSFDPCMACAVHV 553 + E+ + + +PC+ V V Sbjct: 358 RRLAEL--AVLALNPCVGSRVEV 378 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 811 0.0 UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 629 e-178 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 620 e-176 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 617 e-175 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 614 e-174 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 614 e-174 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 603 e-171 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 593 e-168 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 591 e-167 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 590 e-167 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 584 e-165 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 577 e-163 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 576 e-163 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 570 e-161 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 559 e-157 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 549 e-154 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 545 e-153 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 537 e-151 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 532 e-149 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 526 e-147 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 520 e-146 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 513 e-144 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 492 e-137 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 487 e-136 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 480 e-134 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 476 e-132 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 461 e-128 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 447 e-124 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 446 e-123 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 419 e-115 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 417 e-115 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 416 e-114 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 413 e-114 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 413 e-113 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 411 e-113 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 408 e-112 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 406 e-111 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 406 e-111 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 400 e-110 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 398 e-109 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 391 e-107 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 388 e-106 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 387 e-106 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 383 e-105 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 373 e-101 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 371 e-101 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 368 e-100 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 366 1e-99 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 366 2e-99 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 364 4e-99 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 362 3e-98 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 356 2e-96 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 351 6e-95 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 348 3e-94 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 348 4e-94 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 344 4e-93 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 342 2e-92 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 331 6e-89 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 327 8e-88 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 322 2e-86 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 319 1e-85 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 309 3e-82 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 295 2e-78 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 284 7e-75 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 284 9e-75 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 280 8e-74 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 275 3e-72 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 262 4e-68 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 261 5e-68 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 256 1e-66 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 255 4e-66 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 251 7e-65 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 250 1e-64 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 248 6e-64 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 246 2e-63 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 245 2e-63 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 243 1e-62 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 243 2e-62 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 239 3e-61 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 238 3e-61 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 236 2e-60 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 236 2e-60 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 235 3e-60 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 234 7e-60 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 232 3e-59 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 228 5e-58 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 228 6e-58 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 227 8e-58 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 225 3e-57 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 225 5e-57 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 225 5e-57 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 225 5e-57 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 223 1e-56 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 223 2e-56 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 222 2e-56 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 222 3e-56 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 218 3e-55 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 208 4e-52 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 206 1e-51 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 201 5e-50 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 190 1e-46 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 188 5e-46 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 186 2e-45 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 185 4e-45 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 185 6e-45 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 179 2e-43 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 172 4e-41 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 171 6e-41 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 170 1e-40 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 167 1e-39 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 164 6e-39 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 163 2e-38 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 162 3e-38 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 162 3e-38 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 158 5e-37 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 155 5e-36 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 153 2e-35 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 151 7e-35 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 150 1e-34 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 148 7e-34 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 146 2e-33 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 139 3e-31 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 138 8e-31 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 134 7e-30 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 124 6e-27 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 124 7e-27 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 124 7e-27 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 121 9e-26 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 119 4e-25 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 117 9e-25 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 116 2e-24 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 116 2e-24 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 115 4e-24 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 115 5e-24 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 114 9e-24 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 112 3e-23 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 112 4e-23 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 112 5e-23 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 111 5e-23 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 111 7e-23 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 111 8e-23 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 111 9e-23 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 110 1e-22 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 110 2e-22 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 110 2e-22 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 109 4e-22 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 108 6e-22 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 107 9e-22 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 107 2e-21 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 106 2e-21 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 106 3e-21 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 105 5e-21 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 105 6e-21 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 105 6e-21 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 104 7e-21 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 104 9e-21 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 104 9e-21 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 104 1e-20 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 104 1e-20 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 104 1e-20 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 102 3e-20 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 102 3e-20 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 101 8e-20 UniRef50_Q21QY7 Putative hydrogenase expression/formation protei... 101 1e-19 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 100 1e-19 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 100 3e-19 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 94 1e-17 UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 93 2e-17 UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit... 92 5e-17 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 91 1e-16 UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit... 89 4e-16 UniRef50_P40597 Hydrogenase expression/formation protein hoxV n=... 88 1e-15 UniRef50_Q2RV77 Putative hydrogenase expression/formation protei... 87 2e-15 UniRef50_UPI0001913BF4 hydrogenase 2 large subunit n=1 Tax=Salmo... 85 6e-15 UniRef50_P28153 Hydrogenase expression/formation protein hupK n=... 83 2e-14 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 76 3e-12 Sequences not found previously or not previously below threshold: UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 141 1e-31 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 102 4e-20 UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8... 101 1e-19 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 96 2e-18 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 91 1e-16 UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methan... 88 9e-16 UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodom... 87 2e-15 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 87 2e-15 UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment... 86 2e-15 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 86 3e-15 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 86 4e-15 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 84 1e-14 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 84 1e-14 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 84 1e-14 UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodops... 83 2e-14 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 82 4e-14 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 81 9e-14 UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83W... 81 9e-14 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 81 1e-13 UniRef50_UPI0001874346 putative reducing hydrogenase alpha subun... 80 2e-13 UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobil... 79 5e-13 UniRef50_Q2BN45 Putative hydrogenase expression/formation protei... 79 6e-13 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 78 9e-13 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 78 1e-12 UniRef50_P48342 Hydrogenase expression/formation protein hupK n=... 77 2e-12 UniRef50_C6P4F4 Putative hydrogenase expression/formation protei... 76 3e-12 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 76 5e-12 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 75 6e-12 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 74 1e-11 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 74 1e-11 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 74 1e-11 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 74 2e-11 UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 ... 74 2e-11 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 73 2e-11 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 73 2e-11 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 73 2e-11 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 73 3e-11 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 73 3e-11 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 72 5e-11 UniRef50_Q58137 Uncharacterized protein MJ0727 n=3 Tax=Methanoca... 72 6e-11 UniRef50_Q1KZW7 HupK n=2 Tax=Bradyrhizobium RepID=Q1KZW7_9BRAD 72 6e-11 UniRef50_C0VXU6 Reducing hydrogenase alpha subunit n=2 Tax=Coryn... 72 7e-11 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 71 8e-11 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 71 1e-10 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 71 1e-10 UniRef50_P31914 Hydrogenase expression/formation protein hoxV n=... 71 1e-10 UniRef50_C7I139 Ni,Fe-hydrogenase I large subunit n=1 Tax=Thiomo... 71 2e-10 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 71 2e-10 UniRef50_A7IHD2 Putative hydrogenase expression/formation protei... 71 2e-10 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 70 2e-10 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 70 2e-10 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 70 3e-10 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 69 3e-10 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 69 3e-10 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 69 3e-10 UniRef50_A2SJN2 HupK protein n=2 Tax=Burkholderiales RepID=A2SJN... 69 4e-10 UniRef50_A1KC58 Putative hydrogenase expression/formation protei... 69 4e-10 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 69 4e-10 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 69 4e-10 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 68 7e-10 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 68 8e-10 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 68 8e-10 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 68 9e-10 UniRef50_Q0A725 Putative uncharacterized protein n=1 Tax=Alkalil... 68 1e-09 UniRef50_A4JRG2 Putative uncharacterized protein n=1 Tax=Burkhol... 68 1e-09 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 68 1e-09 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 68 1e-09 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 68 1e-09 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 67 1e-09 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 67 2e-09 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 67 2e-09 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 67 2e-09 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 66 3e-09 UniRef50_A0P1N1 Ni,Fe-hydrogenase I large subunit n=1 Tax=Labren... 66 3e-09 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 567/567 (100%), Positives = 567/567 (100%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI Sbjct: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT Sbjct: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP Sbjct: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP Sbjct: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG Sbjct: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS Sbjct: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG Sbjct: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI Sbjct: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 Query: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 HSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 249/592 (42%), Positives = 356/592 (60%), Gaps = 38/592 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DP+TRIEGH+R + I + V++ A + GTM+RG+E I++ RDPRDAW V+RI Sbjct: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLP Sbjct: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLD---GLGVLNL 237 PE NL+ AHYL+AL+ QR+ ++ A+ GGK PH N VGG+ IN+D +G +N+ Sbjct: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNM 254 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDS 292 ERL ++S I + +DF+ V D I F W G G ++Y + P+ D Sbjct: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTT 349 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 315 GEKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGIT 370 Query: 350 IPAYDG------------WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 P Y+ ++ +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 371 DPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 ++ +++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 431 VDRMMSALN------LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 Query: 458 FVKPNIP---ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD 514 E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ Sbjct: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 Query: 515 VGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 620 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 261/579 (45%), Positives = 352/579 (60%), Gaps = 30/579 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS R+ IDPVTRIEGHLRI+ E+E V A++SGTM RG+E I+K RDPR+AW QRI Sbjct: 1 MS-RLVIDPVTRIEGHLRIEAELEGNRVKSAYSSGTMVRGIEIILKGRDPREAWAFAQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTT HA +S+RA E AL I VP NA IR +++ HDH+VHFY L ALDWV+ Sbjct: 60 CGVCTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPI 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+ADP K SE+ + +S + +SP F +VQ+KI+ V QLGIF+ GYW HP +LP Sbjct: 120 QALKADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLP 179 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NL+AVAHYL AL Q +V + GGK PH N VGG+A PI+L +N+++L Sbjct: 180 PEANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHP-NFVVGGMACPIDLQSDTAINMDKL 238 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS-KNGSFLF 299 IKS ID + +FVE+VY D IA+FY +W +G+G N+L + E DS + G F Sbjct: 239 GRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVLGEPEGDSHREGKFFI 298 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI----- 350 P +I + +L +Y + I+E HS+YK DE P+EG T+ Sbjct: 299 PPTFIRDRNLENYEDV-------DYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYTG 351 Query: 351 --PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 P Y + +GKYSW+K+P + G EVGPLA +L A + +N L Sbjct: 352 PEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSY------L 405 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT-- 466 + L V L+ST+GR + R + +++ Y L+ N+ GD TTF + Sbjct: 406 SKLGLPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTW 465 Query: 467 -GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 + KG+G +EAPRG LSHW+ IKDG I+NYQAVVP+TWN PR+ PYE SLVG Sbjct: 466 EKDAKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGH 525 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 + +P +PLE++RTIHSFDPC+ACAVH+ + ++ + Sbjct: 526 ELVNPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 267/629 (42%), Positives = 363/629 (57%), Gaps = 75/629 (11%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + R+ +DP+TRIEGHLRI+ E++ + +A++SGT RG+E I++ RDPRDAW QRIC Sbjct: 7 NNRLVVDPITRIEGHLRIEAEMDGNTIKQAFSSGTSVRGIELILQGRDPRDAWAFAQRIC 66 Query: 62 GVCTTTHALSSVRAAESA----------LNIDV--------------------------- 84 GVCT H ++SVRA E A L + + Sbjct: 67 GVCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSI 126 Query: 85 ----------PVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEML 134 P NAQ IRNI++A HDH++HFY L ALDWVD+ SAL ADPT+ + + Sbjct: 127 GVLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLA 186 Query: 135 KGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQA 194 +S + +SP F V+ K+K LV SGQLGIF+N YWGHP KLPPEVNL+A+AHYL A Sbjct: 187 GQLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDA 246 Query: 195 LECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFV 254 L QR+ +V + GGK PH N VGGV +PINL+ +N RL+ ++ I ++ FV Sbjct: 247 LTWQREVVKVHTIFGGKNPHP-NFVVGGVPSPINLNASTGINTSRLVQLQDAITQMKSFV 305 Query: 255 EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN--GSFLFPGGYIENADLSSY 312 +QVY D IA +Y EW TRG+G N+L+ + P S + SFLFP G I DLS Sbjct: 306 DQVYYPDIVAIAGYYKEWGTRGEGLGNFLTYGDLPMTSMDDPDSFLFPRGAILGRDLSKV 365 Query: 313 RPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI-------PAYDGWSDDGK 361 + D IQE SWY+ + + P+ G T P Y + + Sbjct: 366 HDL----DLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYTGPKPPYKHLNVGAE 421 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+KSP + G +EVGPLA +L+ A + Q+ +N ++I LE + L ST Sbjct: 422 YSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILD------LETSALFST 475 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG---EFKGVGFLEAP 478 LGR + R V + + LQ+ Y L+ NI KGD TF T + +GVG +EAP Sbjct: 476 LGRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQGVGVMEAP 535 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTP-VADPNKPLEVV 537 RG L HW+V+++G I NYQ VVP+TWN+GPR+ N G YE +L + DP++PLE++ Sbjct: 536 RGALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLEIL 595 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVKV 566 RT+HSFDPC+ACAVHV+D G E + +KV Sbjct: 596 RTLHSFDPCLACAVHVMDETGEERLRLKV 624 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 251/595 (42%), Positives = 356/595 (59%), Gaps = 40/595 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DPVTRIEGHLR + I ++ V++ A + GT++RG+E I+K RDPRDAW +RI Sbjct: 16 GRRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAFTERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT THAL+SV A E+AL ID+P NA IRN++ HDH+VH Y L+ LDWVD+ Sbjct: 76 CGVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHLYHLTGLDWVDVV 135 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SA +ADP SE+ + +S W +SP F V++K+ L+ S QLGIF NGYWGHPA KL Sbjct: 136 SASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLGIFTNGYWGHPAYKLS 195 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV---LNL 237 PE NL+ VAHY++AL+ Q+D + + GGK PH N VGGV +N+DG+G +N Sbjct: 196 PEANLMVVAHYIEALDFQKDVVHIHTIFGGKNPHP-NWLVGGVPCSLNIDGVGAADVINQ 254 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGA--VNYLSVPEFPT---DS 292 ERL ++ I++ F +QV DT +A FY +WL G G ++ L+ P D Sbjct: 255 ERLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLSVLAYGGIPDIANDY 314 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGT 348 S L P G I N + + P++ + IQE+ HSWYK + PWEG Sbjct: 315 TENSLLMPPGAIINGNFNEVLPVSL----TNPEEIQETVNHSWYKPYPAGKTGLHPWEGI 370 Query: 349 TIPAYDGWS-------------DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQ 395 T P Y+ + +YSW+K+P + G +EVGPLA ML+ A + + Sbjct: 371 TEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLIGYARKNDDIK 430 Query: 396 NKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG-- 453 +++ + + V L STLGRI R++ + ++ Y LITN+ G Sbjct: 431 GLVDDFLG-----RAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNLKNGVR 485 Query: 454 --DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNF 511 +TT KP TGE +GVGF EAPRG L HW+ I+D I +YQ VVP+TWN PR+ Sbjct: 486 ATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNGAPRSP 545 Query: 512 NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + + YE SL+ T +A P +PLE++RT+HSFDPC+AC+ H++ DG ++++V++ Sbjct: 546 DGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 614 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 242/566 (42%), Positives = 335/566 (59%), Gaps = 26/566 (4%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 I +DPVTRIEGHLRI+ E+ENG V A++S T++RG+E I+K RDPRDA QR CGVC Sbjct: 25 IVVDPVTRIEGHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVC 84 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 T THAL+S R ++A+ + +P NA YIRN++L A HDHIVHFY L ALD+VD+T+AL+ Sbjct: 85 TYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALK 144 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMKLPPE 182 ADP KA+++ +S + + VQ+K+K V SGQLG F N Y+ GHPA L PE Sbjct: 145 ADPAKAAKVASSISP-RKTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDPE 203 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 NLIA AHYL+AL Q A R +A+ G K PH Q VGGV L +R+ Sbjct: 204 TNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC------YDALTPQRIAE 257 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN-GSFLFPG 301 ++ + FV++VY D V+AA Y +W G G N+++ EFP D + S F Sbjct: 258 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG-GTDNFITFGEFPKDEYDLNSRFFKP 316 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + +P + I+E +HSWY+ + PW+G T P Y D + Sbjct: 317 GVVFKRDFKNIKP-------FDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDR 369 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+K+P + G+ +E GPLA +L+ + G + + ++A + L ST Sbjct: 370 YSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKL------GVGPEALFST 423 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 LGR R + + + + NI KGD+ +P + +GVGF+ APRG Sbjct: 424 LGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPK--QAEGVGFVNAPRGG 481 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 LSHW+ I+DG I N+Q VVPSTW GPR + + P E SL+GTPVAD +P+E++RT+H Sbjct: 482 LSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVH 541 Query: 542 SFDPCMACAVHVVDADGNEVVSVKVL 567 SFDPC+AC VHV+D NEV ++L Sbjct: 542 SFDPCIACGVHVIDGHTNEVHKFRIL 567 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 603 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 241/574 (41%), Positives = 334/574 (58%), Gaps = 32/574 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + I +DP+TRIEGHLRI E+ENG V AW+S ++RG+E I+K RDPRDA QR C Sbjct: 13 TGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRAC 72 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HAL+S R + A+ + +P NA+ +RN+++A+ HDH+VHFY L ALDWVD+T+ Sbjct: 73 GVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTA 132 Query: 122 ALQADPTKASEMLKGVSTW-HLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMK 178 AL+ADP KA+++ ++ NS + VQ+K+K V SGQLGIF N Y+ GH A Sbjct: 133 ALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYY 192 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 LPPEV+LIA AHYL+AL Q A +A+LGGK PH Q VGG +N L + Sbjct: 193 LPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSN------YQGLTKD 246 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN---- 294 L + ++ FV + Y D +A FY +W G G NYL+ EF TD + Sbjct: 247 PLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG-GTSNYLAFGEFATDDSSPEKH 305 Query: 295 -GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIPA 352 + FP G I DL D + I E K+SWY + P++G T P Sbjct: 306 LATSQFPSGVITGRDLGKV-------DNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPK 358 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 Y D YSW+K+P + GK +EVGPLA + A G+ + ++ ++ + Sbjct: 359 YTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKL------S 412 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 + LHSTLGR R + + ++ + + K D+T K +P E KGV Sbjct: 413 VPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAK-DNTLCAKWEMPE--ESKGV 469 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G +APRG LSHW+ IK I N+Q VVPSTWN GPR D P E++L+GTP+ADP + Sbjct: 470 GLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKR 529 Query: 533 PLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+E++RT+H+FDPC+AC VHV++ + NE++ KV Sbjct: 530 PVEILRTVHAFDPCIACGVHVIEPETNEILKFKV 563 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 257/608 (42%), Positives = 353/608 (58%), Gaps = 48/608 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +RI +DPVTRIEGH+R + ++ N V+ A ++GTMWRG+E I+K RDPRDAW V+RI Sbjct: 15 GRRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERI 74 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT HAL+SVRA E+AL+I +P NA IR I+ HDH VHFY L ALDWVD+ Sbjct: 75 CGVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVM 134 Query: 121 SALQADPTKASEMLKGVSTWH-LNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 SAL+ADP + SE+ + VS H L+S F +QN++K V SGQLG F NGYWG A L Sbjct: 135 SALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGPFMNGYWGSKAYVL 194 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV----L 235 PPE NL+AV HYL+AL+ Q++ ++ + GGK PH L GGV INLDG+G + Sbjct: 195 PPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLV-GGVPCAINLDGIGAASAPV 253 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WLTRGK-GAVNYLSVPEFPTDS 292 N+ERL ++K+ ID++ +F + VY D I Y + WL G A N L E+P + Sbjct: 254 NMERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAATNVLDYGEYPNVA 313 Query: 293 KNGSFL-FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGT 348 N S PGG I N + P+ D + +QE HSWYK + PW+G Sbjct: 314 YNKSTDQLPGGAILNGNWDEVFPV----DPRDSQQVQEFVSHSWYKYADESVGLHPWDGV 369 Query: 349 TIPAY-------------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGR---- 391 T P Y + + KYSW+KSP + G +EVGPL+ ++ A R Sbjct: 370 TEPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYILAYAHARSGNK 429 Query: 392 ---------ESTQNKLNEIVAIYQKLTGNTLEVAQL-HSTLGRIIGRTVHCCELQDILQN 441 E + +N + L + QL ST+GR + R + +++ + Sbjct: 430 YAERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQYCGEMMHS 489 Query: 442 QYSALITNIGKGDHTTFVKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQA 498 + L+ NI GD T + KGVG + APRG L HW+ IKDG I NYQ Sbjct: 490 DWHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRIKDGRIENYQC 549 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADG 558 VVP+TWN PR++ +G +E SL+ TP+ +P +P+E++RT+HSFDPC+AC+ HV+ A+G Sbjct: 550 VVPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLACSTHVMSAEG 609 Query: 559 NEVVSVKV 566 E+ +VKV Sbjct: 610 QELTTVKV 617 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 591 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 243/596 (40%), Positives = 335/596 (56%), Gaps = 50/596 (8%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + I +DP+TRIEGHLRI+ I EN + AW+S TM+RG+E I+K RDPRD ++ RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH S+ A E A I +P NA+ +RN+I A HDH+VHFY L ALD+VD+ S Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 122 ALQADPTKASEMLKGVSTWHLNSP-----EEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 A +A+PT + + + + P +F VQ++I V G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 KL PE NLI VAHYL+AL+ QRD ++ A+ GGK PH Q++ VGGV ++ N Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK-----N 275 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAV-----------NYLSV 285 R+ K + + ++F++ Y D + Y + T + +Y+S Sbjct: 276 PARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSYMSY 335 Query: 286 PEFPTDS---KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-AP 341 +F D N LFP G + + D+S + I E HSWY+ AP Sbjct: 336 GDFRLDDTGFYNSEMLFPSGLVLDGDISKALDV-------DPNKITEDVTHSWYEGTGAP 388 Query: 342 QAPWEGTTIPAYDGWSDDG----------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGR 391 + P+EGTTIP Y G KYSW+KSP + GK VEVGPLA M++ G Sbjct: 389 EHPYEGTTIPKYTGLEKKADGYSYLKTEEKYSWIKSPLYDGKKVEVGPLARMVIGYVKGD 448 Query: 392 ESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIG 451 + + + L V L ST+GR R + + D++ L N Sbjct: 449 KRITKYVGNFLKRAN------LPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAA 502 Query: 452 KGDHTTFVKPNIPA-TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRN 510 GD +T+ + + + + KG+G EAPRG L HW+ +K+G + NYQAVVPSTWN+GPR Sbjct: 503 SGDLSTWTEFDFDKVSVDTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRG 562 Query: 511 FNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++G YE SL+GT VA+P +PLE++RTIHSFDPC+ACAVHVVD G E+ KV Sbjct: 563 PKGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 590 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 244/577 (42%), Positives = 328/577 (56%), Gaps = 36/577 (6%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + +DPVTRIEGHLR++ +ENG + +S ++RG+E I+K RDPRDA QR CGVC Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKIIDVRSSSQLFRGLEIILKGRDPRDAQHFTQRSCGVC 77 Query: 65 TTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 T THAL+SVR ++A+ +D +P NA IRN++LAA HDH+VHFY L ALD+VD+++ Sbjct: 78 TYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSAC 137 Query: 123 LQADPTKASEMLKGVSTWHLNSP------EEFTKVQNKIKDLVASGQLGIFANGYW--GH 174 L AD KA+EM GV+ P + K ++ +K +V SG+LGIF N Y+ GH Sbjct: 138 LNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGGH 197 Query: 175 PAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV 234 PA LPPEVNLIA HYL+AL Q A R +A+ G K PH Q +GGV Sbjct: 198 PAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVTC------YEG 251 Query: 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT---D 291 L + + + ++ DFV Y D +A FY +W G G N++S EFP + Sbjct: 252 LTDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIG-GTTNFMSCGEFPVPGGE 310 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 + S G I N +L D I E KHSWYKD A Q P+ G T P Sbjct: 311 TDLTSRYVKPGVIMNRNLGQV-------DALDPSKIAEHVKHSWYKDGAAQHPYNGVTDP 363 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 Y D KYSW+K+P + GK VEVGPLA LV G + ++ + L Sbjct: 364 MYTSLDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEFKTYVDFV------LKAL 417 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 + L STLGR R + C + + L N+ KGD ++PA+ + G Sbjct: 418 GVGPEALFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDICKDWDMPASAQ--G 475 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV-GTPVADP 530 VG++ APRG LSHW+ IKD I N+Q VVPSTWN GPR ND GP E++L+ TP+ADP Sbjct: 476 VGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGPLEEALLDNTPIADP 535 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 +P+E++RT+HS+DPC+AC VHV+D V ++L Sbjct: 536 ERPVEILRTVHSYDPCIACGVHVIDNKTGNVKKFRIL 572 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 584 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 238/588 (40%), Positives = 338/588 (57%), Gaps = 43/588 (7%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M++RI +DP+TRIEGHLRI+ + EN V+ A+++ T+WRG+E I+K RDPRDA QR Sbjct: 1 MTKRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICGVCT +H + + A E+AL I P+NA+ IR+++ + HDH VHFY L LDW DI Sbjct: 61 ICGVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDI 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEE-FTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 TSAL+ADP AS++ S + + + T VQ ++ + A G LG FAN YWGH + Sbjct: 121 TSALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYR 180 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 PE NLI ++HYL+ALE QR A +++A+ G K PH Q+L VGGV + ++ L+ Sbjct: 181 FSPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTSVMD-----ALDPS 235 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEW--LTRGKGAVNYLSVPEFPTDSKNGS 296 RL + ++DFV + Y D + A + + G N+ S E P + Sbjct: 236 RLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYSYQEIPLNKT--E 293 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 +++ G + + D++ I I E A H+WYK+ P++G P Y G+ Sbjct: 294 WMYSTGIVMDGDITKVHEINEDL-------ITEEATHAWYKENKALHPYDGQQDPNYTGF 346 Query: 357 SD------------------DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 D GKY+W+K+P + GK +EVGPLA ++V LAA + Sbjct: 347 KDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRIEKVA 406 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 + L L +A L +TLGR R + C D +++LI N+ K D +T+ Sbjct: 407 TQF------LKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANL-KVDQSTY 459 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 I E+KG PRG+LSHW+ IK+G+I NYQAVVPSTWN+GPR+ N GPY Sbjct: 460 TTYKIDKNKEYKGRYMGTVPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGPY 519 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 E SLVG + D ++PLE++R IHSFDPC+ACAVHV+D GNE+ +V Sbjct: 520 EASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 577 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 244/584 (41%), Positives = 340/584 (58%), Gaps = 32/584 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S R+ IDPVTRIEGHLR++ E +GV+ AW S T +RG+E I RDPRD W V+RIC Sbjct: 12 SSRVVIDPVTRIEGHLRVEMEAGDGVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVERIC 71 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT THA++++ A E AL VPV A+ +R+++ A DH++HFYQL A+DWVD+ S Sbjct: 72 GVCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVDVMS 131 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL+ADP + + + K +S W L+S F VQ K+KD +A GQ IF NGYWGHPA KLPP Sbjct: 132 ALKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYKLPP 191 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 EVNL+ VAHYLQAL QRD ++ +LGGK PH N VGG+A IN++ +N L Sbjct: 192 EVNLLGVAHYLQALVWQRDMIKIHTILGGKNPHP-NFLVGGMACAINMNNDQAINQFSLS 250 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP---EFPTDSKNGSFL 298 Y+K + DF+ +VY D IA FY ++ G N+ E T + G + Sbjct: 251 YLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIGASNPNFFCTGAPSEINTGAPAGKGM 310 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTT----- 349 G + N D + P + I+E SWY+ +A AP++G T Sbjct: 311 IKPGVLLNGDYRNVLP-------FDQDKIREFVTSSWYRYTEGRDAGLAPYDGETNADYN 363 Query: 350 --IPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQK 407 P Y SD +Y+WVK+P + G + VGP A M++ A G + +++ Sbjct: 364 GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVDAACDKL-- 421 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP--- 464 G + A ++STLGR+ GR + D++ +Q + I G+ +TF Sbjct: 422 --GLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKWEPET 479 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 KGVG++EAPRG LSHW+ I++G NYQAVVPSTWNS R+ +GPYE SL Sbjct: 480 WPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEYSLAH 539 Query: 525 T---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVK 565 T P+ DP++P+E +RTIHS+DPC +CAVH+ D +G +++ + Sbjct: 540 TGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILTRQ 583 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 576 bits (1484), Expect = e-163, Method: Composition-based stats. Identities = 245/585 (41%), Positives = 334/585 (57%), Gaps = 37/585 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI IDP+TRIEGHLRI+ E E G + AWA T +RG+E+I++ RDPRDAW QRIC Sbjct: 3 TERIVIDPITRIEGHLRIELEAEGGRIGNAWACATQFRGIEKILEGRDPRDAWAFAQRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HA++S+RA E A+ +P +A+ IRN++ T DH++HFY L ALDWVD+ S Sbjct: 63 GVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVDVMS 122 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL ADP S + VS W NS F +VQ ++ A G LGIFA+GYWGHPA +LPP Sbjct: 123 ALAADPAATSRLAASVSPWPNNSVSWFKEVQQRVAT-SAKGGLGIFASGYWGHPAYRLPP 181 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 E NL+AVAHYL+AL+ QR+ ++ + GK PH L GG+A INLD +N RL Sbjct: 182 EANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYLV-GGMATSINLDNQLTINKVRLD 240 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPE--FPTDSKNGSFLF 299 + I + FV++VY D IA FYPE+ + G + ++V E F Sbjct: 241 QLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTPAGKPV 300 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEGTTIPAYDG 355 G + + D + P + + + E +WY D PW+G T P Y G Sbjct: 301 AAGLLMDGDYRTPHP-------FNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPHYTG 353 Query: 356 -------WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 SD KY+W K+ + G+ V+VGP A +++ A G T N + I + Sbjct: 354 PKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANRDLGILKA- 412 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF----VKPNIP 464 V L+STLGR R + L ++ ++AL I GD +TF +P Sbjct: 413 -----GVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPE-S 466 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 + +G+GF+EA RG LSHW+ I +G IS YQ VVPSTWNS R+ N +GPYEQ+L G Sbjct: 467 WPKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQALAG 526 Query: 525 ---TPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+ D +P+EV+RTIHSFDPC++CAVH++ G VKV Sbjct: 527 DKKHPLVDAKRPVEVLRTIHSFDPCLSCAVHML-IPGGPAFEVKV 570 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 570 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 239/575 (41%), Positives = 341/575 (59%), Gaps = 31/575 (5%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I IDPVTRIEGHLR++ E++ V++AWASG ++RG+E I+K RDPRD +I QRIC Sbjct: 8 QKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTGLIAQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT +H +S+ A E+A +I P NA+ +RN++ A DH+VH+Y L +LD+VD+TS Sbjct: 68 GVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLDYVDVTS 127 Query: 122 ALQADPTKASEMLKGVSTWHLN-SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+AD KASE+ N S + VQ K+ + V +G+LG+FANGYWGH KL Sbjct: 128 ALEADCHKASEIAHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQYKLS 187 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NLI + HYL+AL QR+ ++ +A+ GGKTPH QNL VGGV + +++ LN +RL Sbjct: 188 PEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDM-----LNPQRL 242 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL--TRGKGAVNYLSVPEFPTDSKNGSFL 298 I +F+++ Y D ++ A Y + + G+G N++ + + L Sbjct: 243 NDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEGRGHGNFMCSGGYQL--SDDEPL 300 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 F G I D S D + I E A SWY DEAP P++ TT P Y + Sbjct: 301 FASGIIWGHDFSKI-------DAFDDTQITEEASRSWYADEAPTRPYDETTEPDYTDMNA 353 Query: 359 DG------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 DG KYSW+K+P + G+ +EVGP A M++ ++ + + + Sbjct: 354 DGTLKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYVKKAKTVRPYMQHFMD------DTG 407 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKG 471 LE+ S +GR R V + D++ S LI NI D TT+ K + A E KG Sbjct: 408 LELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDETTWTKYDFEALPLETKG 467 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 LE PRGMLSH++ I++ + NYQAVVP+TWN+ P++ GPYE+++VG +ADP Sbjct: 468 RAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPYEEAIVGLKLADPQ 527 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +PLEV+R +HSFDPC+ACAVHV+DA G + +V Sbjct: 528 QPLEVLRAVHSFDPCLACAVHVIDAQGQTLSEHRV 562 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 228/587 (38%), Positives = 329/587 (56%), Gaps = 42/587 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++R+ +DP+TRIEGHLRI+ E ++ +SKAWA T +RG+E +VK DPRD W V RIC Sbjct: 3 TERVVVDPITRIEGHLRIELEADDKKISKAWAETTQFRGIETVVKGHDPRDVWAFVGRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH+++SV A E A +I +P A+ IR +IL + HDH+VHFY L ALD+V++ S Sbjct: 63 GVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVNVVS 122 Query: 122 ALQADPTKASEMLKGV-STWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A QADP KA + + STW N+ + F +V+ ++ ++ SGQL +F GYW HP +LP Sbjct: 123 AAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDYRLP 182 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NL+AV+HYL AL+ QR R+ + GGK PH N VGG+A I+ D +N L Sbjct: 183 PEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHP-NFLVGGMACSIDPDKSETVNQVSL 241 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP----EFPTDSKNGS 296 IK + ++ DFV Y D I + Y ++ G+ + N+L+V + D Sbjct: 242 DQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQSSPNFLAVGMAGATYSGDPAESR 301 Query: 297 -----FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEG 347 G + DL + P I E +WY DEA P G Sbjct: 302 IPTIHPEIKPGVFLDGDLHTVHPFEPW-------KITEGISSAWYTYADGDEAQLTPDVG 354 Query: 348 TTIPAYDG-------WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNE 400 T P Y G +DD KY+W K+P + G+ +++GP+A +L+ G +T +++ Sbjct: 355 ETTPQYTGPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGESTTVKLVDD 414 Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDIL-QNQYSALITNIGKGDHTTFV 459 + + + QL+ST GR + R V D + + + I GD F Sbjct: 415 ALKTL------GITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDVFN 468 Query: 460 KPNIPAT---GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVG 516 + E KG+ F+E RGMLSH++ +KD + NYQAVVP+TW + PR+ +G Sbjct: 469 GSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPRDKTGQLG 528 Query: 517 PYEQSLVGT---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 PYE++L G P+ ++PLEV+RTIHSFDPCMACAVH++D +G E Sbjct: 529 PYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 202/572 (35%), Positives = 292/572 (51%), Gaps = 56/572 (9%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 Q+I IDP+TRIEGHL+I+ ++ G V A GT++RG E +K+RDPRDA I QRICG Sbjct: 2 QKIVIDPITRIEGHLKIEATVDGGEVKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRICG 61 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 VC T+H ++ ++A + +P N + +RN+I A+ HIVHFY L+ALD+VD+T Sbjct: 62 VCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVT 121 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP-AMKL 179 D T E KV++ I +A+G + + A Y + +L Sbjct: 122 EVADYDGTDP----------------ELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRL 165 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P +V AVAHY++AL +R A+ + A+ G+ PH + GGV + ++D Sbjct: 166 PKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAGGVTSHPSID--------S 217 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF-- 297 + S ++ L F++ VY D +A YP++ G G N LS F ++ + Sbjct: 218 ISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDYFGIGVGCGNLLSYGVFDLEANGTNLAT 277 Query: 298 ---LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYD 354 LF G + +DL+ + I E K+ W+K E + P T P + Sbjct: 278 RQRLFTQGTVSASDLT--------LHTFDPNKITEDIKYGWFKGETNEYPLNEVTEPDHT 329 Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 YSW+K+P + EVGPLA M+V AG Q +N+ +A + Sbjct: 330 KAE---GYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMVNDTLAHF------GAG 380 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 A L STLGR R + C + D + L K IP + E G+G Sbjct: 381 PAALFSTLGRHAARALECKIVADEMVKWVMEL-----KIGEPVCADYEIPESAE--GMGL 433 Query: 475 LEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 EAPRG L HW+ I++ ISNYQ VVPSTWN P++ GP EQ+L+GT V D + P Sbjct: 434 WEAPRGALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPVEQALIGTKVRDNDNPF 493 Query: 535 EVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 E+VR + SFDPC+ACAVH+V GNE+ +V Sbjct: 494 ELVRIVRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 242/629 (38%), Positives = 332/629 (52%), Gaps = 65/629 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS R+ IDPV+RIEGHLR++ E++ V+ A ++GTMWRG+E IVKNRDPR+ W Q Sbjct: 1 MSSRVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVCTT HAL+SVR E AL+I++P NA YIRNI+L HDH+VHFY L ALDWV Sbjct: 61 RICGVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVS 120 Query: 119 ITSALQADPTKASEMLKGV---------------------STWHLNSPEEFTKVQNKIKD 157 A++ADP + + + + +P F Q+KIK+ Sbjct: 121 PLEAVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKN 180 Query: 158 LVASGQLGIFANGYWGHPAMK-LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 LV SGQLGIFA +W HP K LPPEV+LIAV+HYL L+ QR+ + GGK PH Sbjct: 181 LVQSGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPH 240 Query: 217 NLAVGGVANPINLDGLGV-LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE-WLT 274 + GG+ I++D + +N+ERL ++ + ++ Y +D I Y + T Sbjct: 241 YIV-GGMNCSISMDDMNAPINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGWT 299 Query: 275 RGKGAV--NYLSVPEFPTDS----KNGSF-----LFPGGYIEN----ADLSSYRPITSHS 319 G G L ++P + KNG + G +EN D + Y P+T + Sbjct: 300 YGGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLT-NK 358 Query: 320 DEYLIKGIQESAKHSWYK---DEAPQAPWEGTTIPAYDG-----------WSDDGKYSWV 365 D IQE HSWY+ + PW G T P Y G ++GKYSW+ Sbjct: 359 DLTNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYTGPKEGTKTHWKYLDENGKYSWI 418 Query: 366 KSPTFYGKTVEVGPLANMLVKLAAGRESTQN--KLNEIVAIYQKLTGNTLEVAQ---LHS 420 K P + EVGPLA ++ A ++ ++E+V L L + + + Sbjct: 419 KEPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPT 478 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT---GEFKGVGFLEA 477 T+GR R + C + L NI GD + + + KGVG EA Sbjct: 479 TVGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEA 538 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW +IKDG I NYQAVVP+TWN PR+ G +E+S+ T V +PLE++ Sbjct: 539 PRGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEIL 598 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVKV 566 R+IHSFDPC+AC+ HV + EVVS K+ Sbjct: 599 RSIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 208/570 (36%), Positives = 309/570 (54%), Gaps = 38/570 (6%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ + IDP+TRIEGHLR++ E+ NG VS AW SG +RGME +V+NR P DA IVQRI Sbjct: 1 MTRSV-IDPITRIEGHLRVEMEVTNGKVSDAWVSGGCFRGMEMVVENRTPEDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA SS AAE A I + NA+ IRN++ A H HI+ FY L+ALD+V+ Sbjct: 60 CGVCPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP---AM 177 +AL+ADP A ++ + T + +F ++ ++ + +GQL IF+ ++ A Sbjct: 120 NALKADPADAYDLAQAAGTSMNS---DFVALKERLANFADNGQLSIFSGNWFDAEDGTAY 176 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +LPPE++LI AHYL+AL Q A+++ A++GGK PH+ L GG A Sbjct: 177 QLPPELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPTD-------- 228 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 ++L +K+ D++ D+VE DT IA +Y + L GKG Y++ F Sbjct: 229 QKLDELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGRYVAWGVF--------- 279 Query: 298 LFPGGYIENAD--LSSYRPITSHSDEYLIKG-----IQESAKHSWYKDEAPQAPWEGTTI 350 PG Y + + Y P+ D+ + I E SWYK +A T Sbjct: 280 EGPGDYASYTEQMANRYLPMGVIDDKLNLSDVQENLITEYMGRSWYKGDATYTSPYFVTE 339 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P Y ++ + +Y+WVK P + GK E G L+ +L +++ ++ + G Sbjct: 340 PEYTEYNVEDRYTWVKCPAYDGKPYEAGGLSRVLAAYKRNVPFVVEQVDGLL----EALG 395 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 ++ STLGR R + + ++++ + LI + GD F +P+ T Sbjct: 396 APGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGDSEYFREPS---TITGA 452 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G GF EAPRG L H IKDG I YQ ++P+TWN P N + + GP EQ+L+G PV D Sbjct: 453 GTGFWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQALIGNPVGDI 512 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 KP+ +RT+HSFDPC ACAVH+ + + Sbjct: 513 EKPINALRTVHSFDPCTACAVHITEPATGK 542 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 193/567 (34%), Positives = 285/567 (50%), Gaps = 56/567 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++ IDPVTRIEGHL+++ E+ NGVV+ A + GTM+RG E +++ RDPRDA + +R CGV Sbjct: 3 KVVIDPVTRIEGHLKVEVEVTNGVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H +S A + A VP + IRN+++ A HDH +HFY LSALD++DIT+ Sbjct: 63 CAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAVA 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + +V++KI L+A+G Y PE+ Sbjct: 123 KYQGQDPGLL----------------RVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPEL 166 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 +AV+HYL AL Q A ++ AL GK PH ++ GGV N++ + Sbjct: 167 VTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAGGVTMLPNIEVVE--------QF 218 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWL---TRGKGAVNYLSVPEFPTDSKNGSFLFP 300 +S + + D++E +Y D L G G N+L+ F D + FLF Sbjct: 219 RSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGLDDEGKDFLFK 278 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIPAYDGWSDD 359 G + + +LS+ P+ I E H+WYKD P++ T+P + Sbjct: 279 QGIVLDGNLSNVMPVDQ-------SKITEGVTHAWYKDNPNGDHPYDSDTVP---DLAKK 328 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS+VK+P + GK +EVGPLA MLV G L +I+A Y G Sbjct: 329 DAYSFVKAPRYDGKPIEVGPLARMLVMQPQG-------LMDIIAKYNIKPG--------- 372 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 + R R L + N + L +GKG + P +G+G E PR Sbjct: 373 -AVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPP-ATGQGIGLTEVPR 430 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ IKD + NYQ VVP+TWN P++ + GP E++L+G P+ D N P+ +VR Sbjct: 431 GALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVRV 490 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKV 566 I S+DPC+ACA+H++D NE+ KV Sbjct: 491 IRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 206/573 (35%), Positives = 307/573 (53%), Gaps = 33/573 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ TIDP+TRIEGHLR++ E+ +G+V+ AW SG +RGME +V++R P+DA IVQRI Sbjct: 1 MART-TIDPITRIEGHLRVEMEVNDGIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA ++ AAE A I +P +A+ IRN++ A H HI+ Y L+ALD+V+ Sbjct: 60 CGVCPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW-------- 172 +AL AD A ++ + + +F +Q+++ +GQL IF+ ++ Sbjct: 120 NALNADTGLAYDVAEEYGLKN----ADFVSLQDRLARFADNGQLSIFSGNWFPTAEQYAD 175 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 G L PE +LI AHYL+ALE Q A+ + A+LGGK PH+ L GG + Sbjct: 176 GTNEYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGT--------M 227 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS 292 V ++L +K ID+L ++V V D+ + FYPE G G Y + F +S Sbjct: 228 FVPTDQKLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGCRRYGAWGVFERES 287 Query: 293 -KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 K P G IE +Y+ E I E HSWY P+E P Sbjct: 288 FKMADRYMPSGVIELGPDGNYQ-----LSEVEESKITEYVGHSWYSGSEDLPPFEQGVNP 342 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 Y ++ D +Y+W K + GK +E+G + +LV G + + ++ A+ L G Sbjct: 343 EYTEYNTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIKEHVD---ALLVALGGT 399 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 +++ ST+GR R V + +++ + L+ I GD T F K + E +G Sbjct: 400 PGDLSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYFTKSD---AVEGEG 456 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 GF EAPRG L H +K+G I +YQ ++P+TWN P + + GP EQ+L+G PV D Sbjct: 457 TGFWEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVHGPMEQALIGVPVTDME 516 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 KP+ +RT+HSFDPC ACAVHVV+ + Sbjct: 517 KPIHALRTVHSFDPCTACAVHVVEPKTGKKFET 549 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 520 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 233/628 (37%), Positives = 335/628 (53%), Gaps = 69/628 (10%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DP++RIEGHLR++ +++ G V A +SGT WRG+E + K+RDPRD W VQRI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHAL+++RA E A+ I +P NA YIRNI+ ++ HDHIVHFY L ALDWV Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 121 SALQADPTKASEMLKGV----------------------STWHLNSPEEFTKVQNKIKDL 158 +AL ADP K +++ V + + FT VQ K+K + Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 159 VASGQLGIFANGYWGHPAMK-LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQN 217 V SGQLGIF+ +W HP LPPEV+L+AV+HYL L+ QRD + GGK PH Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 218 LAVGGVANPINLDGLGV-LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE-WLTR 275 + GG+ I+++ + +N +RL ++ I D V+ Y D I Y E + Sbjct: 242 IV-GGMPCSISMNDMNAPINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMID 300 Query: 276 GKGAV--NYLSVPEFPTDSKNG---------SFLFPGGYIEN----ADLSSYRPITSHSD 320 G G +S ++P D+ G + G +EN D +++ P+ D Sbjct: 301 GGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEG-KD 359 Query: 321 EYLIKGIQESAKHSWY---KDEAPQAPWEGTTIPAYDG-----------WSDDGKYSWVK 366 + + E HSW+ P EG T P + G +D KYSW+K Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFTGPKSGTKEKWEFLDEDKKYSWIK 419 Query: 367 SPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN-----TLEVAQLHST 421 SPTF GKT EVGPLA +V ++ ++ + + +T Sbjct: 420 SPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMTT 479 Query: 422 L-GRIIGRTVHCCELQDILQNQYSALITNIGKGDHT----TFVKPNIPATGEFKGVGFLE 476 + GR R + +I Q ++ L++NI GD T T +PN + KGVG ++ Sbjct: 480 MVGRTACRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNT-WDKDAKGVGLVD 538 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 APRG L HW+ IKDG +NYQ +VPSTWN+ P+ ++ G YE S++ T V +KPLE+ Sbjct: 539 APRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLEI 598 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSV 564 ++ IHSFDPC+ACA H+ + G ++VSV Sbjct: 599 LKVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 191/555 (34%), Positives = 277/555 (49%), Gaps = 59/555 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS + +DP TRIEGHL + ++N V A +G M RG E+I++ R P DA IVQRI Sbjct: 1 MSSIVKLDPFTRIEGHLAVSLNVQNNRVKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +H ++SV A E A I +P NA+ RNI+LA++ HI HFY LSALD++DIT Sbjct: 61 CGVCPVSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQL---GIFANGYWGHPAM 177 + L A + +QN +K +AS L F Y G Sbjct: 121 AILDYKGGDAFLLA----------------MQNWVKAELASKNLFPAAPFLPRYQGR--Y 162 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 + N+ A+ +Y ALE + A++++A+ GK PH+ ++ GG+ + Sbjct: 163 LKDVDFNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPGGITEKVTT-------- 214 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 ++++ KS + +L F+ Y+ D I A +P +L+ GK N+LS F + S Sbjct: 215 KKIIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGNFLSFGAFGDANLEKSP 274 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 L P G + L I+ I+E S Y ++ T+P Sbjct: 275 LLPAGALLQGKLEEVDDIS----------IKEDVSFSKYSSDSG----REKTVPEP---H 317 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 G YSW+K+P + G+ +EVGPLA ++V A G + Q N L L + Sbjct: 318 KSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAF------LQKTDLSLTD 371 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 L S LGR I R + + + + L + D T V NIP + +G G +EA Sbjct: 372 LDSCLGRHIARFIELEVIIEKCEEWMEQL-----RPDQPTAVDFNIPQ--QAEGRGMMEA 424 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW+ I+ I Y+ +VP+TWN P++ GP EQSL+GT VAD PLE Sbjct: 425 PRGALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGTIVADKTNPLEAA 484 Query: 538 RTIHSFDPCMACAVH 552 R + S+DPC+ACAVH Sbjct: 485 RIVRSYDPCLACAVH 499 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 191/571 (33%), Positives = 278/571 (48%), Gaps = 97/571 (16%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +++I +DPVTRIEGHL+I+ E++ V AW++G ++RG+E I+K RDPRDA I QRIC Sbjct: 4 ARKIVVDPVTRIEGHLKIEVELDGNRVHDAWSTGLLFRGLEIILKGRDPRDAQHITQRIC 63 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GV +H +SSV + A I P N + +RN+I A+ HI+HFY L+ALD+V Sbjct: 64 GVUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGP- 122 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + F Y G +LPP Sbjct: 123 -----------------------------------------ETAPFVPRYEGD--YRLPP 139 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 +V + V HY+QAL +R A+ + A+ G K PH GGV + + + + Sbjct: 140 DVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTSTVTAEQVEA------- 192 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT----DSKNGSF 297 + +L F++ VY D +A Y +W + G G N LS +P D + Sbjct: 193 -YAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKDPNGKNL 251 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ-APWEGTTIPAYDGW 356 F G S+ P+++ I+E HSWY+ +A P+EG T+PA D Sbjct: 252 FFTRGVYAGG---SFMPMSADH-------IREHVTHSWYESKAGGKHPFEGETVPAVDKR 301 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 G YSW+K+P + + EVG LA V GR+ L + Sbjct: 302 ---GGYSWIKAPRYESYSCEVGALARQWV----GRDPQVIGLGD---------------- 338 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 + S +GR R + ++ + L + F ++P + KG G E Sbjct: 339 KAFSVMGRHFARAIETTKVAHAMLGWLEEL-----EPGQPAFRPHDVPE--KAKGFGLTE 391 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 APRG L HW+ I++ +I NYQAVVPSTWN GPR+ GP E++LVGT VADP+ P+E+ Sbjct: 392 APRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALVGTEVADPDNPIEL 451 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 VR + +FDPC+ACAVHV++ G VS V+ Sbjct: 452 VRIVRAFDPCIACAVHVMEVRGGSGVSRFVV 482 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 179/551 (32%), Positives = 275/551 (49%), Gaps = 50/551 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I I PVTRIEGHL + +ENGVV A G M+RG E +++ RDP D+ I QRICGV Sbjct: 2 KIDIGPVTRIEGHLNVQTTVENGVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICGV 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA++S A E A + VP N + + N+I A+ +DH++HFYQL ALD+VDIT+ L Sbjct: 62 CPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAVL 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA-MKLPPE 182 + + E +KV++ +K V SG+ A + Sbjct: 122 E----------------YTGRDPELSKVRDWVKAEVDSGKRYPAAPFLPRLDGKYLDNRD 165 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 NL A+ +YL A+ ++ AN+ A+ GG+ PH ++ GG ++D ++ Sbjct: 166 ANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPGGCTQNASIDL--------ILA 217 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS-KNGSFLFPG 301 +S I ++ DF+ Y D +A +PE+ G+ +LS P +N L Sbjct: 218 YQSLIREVRDFIHLKYIPDVLAVAGAFPEYWEIGQSKGGFLSYGHMPLGPARNSERLLAP 277 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + LS+ + I++ H+ Y + + +P D + Sbjct: 278 GVLLGDQLSAVE----------LGKIRQDVNHALYSSASNLTVRDAAIVPQPDKGGE--A 325 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+ +P + G+ VEVGP A ++V A G KL E A + ++ N QL+S Sbjct: 326 YSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFAGHANISAN-----QLNSV 380 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 LGR + R + + D + + L T + + PA+GE G G EA RG Sbjct: 381 LGRHLSRAILAAVIADFVLAESERL-----DPAAPTMAELDPPASGE--GFGITEASRGA 433 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H++ I++ I+ Y+ VVP+TWN+ PR+ G E +L+GT V +P + +E R + Sbjct: 434 LLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGTRVQNPEEQIESKRIVR 493 Query: 542 SFDPCMACAVH 552 SFDPC+ACAVH Sbjct: 494 SFDPCLACAVH 504 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 179/565 (31%), Positives = 264/565 (46%), Gaps = 67/565 (11%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I+IDP+TR+EGHL+I+ E+++G V A SG M+RG E+I++ RDPRD+ IVQRICGV Sbjct: 14 KISIDPLTRVEGHLKIEVEVKDGKVVDAKCSGGMFRGFEQILRGRDPRDSSQIVQRICGV 73 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +SV A + A + V N + RN+I A+ HI+HFY L+ALD+V Sbjct: 74 CPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVS 133 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P A+ L + ++IKD + Sbjct: 134 PFVPRYANADL----------------LTDRIKDGAKA-------------------DAT 158 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N + YL+ALE +R + +VA+ GG+ PH+Q + VGG D ++ Sbjct: 159 NTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTAD--------KVAEY 210 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + ++ FV + Y + + Y + G G N ++ FP D +FL G Sbjct: 211 AARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAFGVFPEDDDYKTFLLKPGV 270 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA--PQAPWEGTTIPAYDGWSDDGK 361 + +E+ K ++E HS++ A G T P D G Sbjct: 271 YIDG----------KDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPD---KPGA 317 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS+VK+P + K EVGPLA M V+ Q L E+ I K + + A S Sbjct: 318 YSFVKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKA--FSI 375 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 +GR + ++ + + T+VK IP E G GF EAPRG Sbjct: 376 MGRHVLVAEETWLTAVAVEKWLKQV-----QPGAETYVKSEIPDAAE--GTGFTEAPRGA 428 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H++ IKD I NYQ V + WN+ PR+ GP E++L+G PV D P+ V R + Sbjct: 429 LLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVR 488 Query: 542 SFDPCMACAVHVVDADGNEVVSVKV 566 S+DP + CAVHV+ A+ E V + Sbjct: 489 SYDPULGCAVHVLHAETGEEHVVNI 513 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 187/544 (34%), Positives = 254/544 (46%), Gaps = 75/544 (13%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I IDPVTRIEGHL+ + +ENG V A SG M+RG E I++ RDPRDA IVQRICGV Sbjct: 18 TIAIDPVTRIEGHLKAEVVVENGKVVDARLSGGMYRGFETILRGRDPRDASQIVQRICGV 77 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H+ +SV A + A VP N + RN+I A+ HI+HFY LSA D+V Sbjct: 78 CPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTA 137 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P + ++L E+ Sbjct: 138 PFVP-------------------------------------------RFPKSDLRLSKEL 154 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N V Y++ALE +R + +VAL GG+ PH+Q VGG E+L+ Sbjct: 155 NKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATEIPT--------KEKLVEY 206 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF-PGG 302 + K+ DFVEQ Y I + Y + G+G L V FP D+ LF PG Sbjct: 207 AARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPLDNSGKKHLFMPGV 266 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPW-EGTTIPAYDGWSDDGK 361 Y + D+ + I+E K+SW+ +E + EG TIPA D G Sbjct: 267 YAKGKDM-----------PFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPD---KAGA 312 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS+VK+P + G ++EVGPLA M V + L ++ I K + E A S Sbjct: 313 YSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAA-FSL 371 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 +GR + R + ++ + K T V P +PA+ E G GF EAPRG Sbjct: 372 MGRHVARAEETYYMLGAIEGWLKEI-----KAGEDTVVMPAVPASAE--GTGFTEAPRGS 424 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H++ +KD I NYQ V S WN PR+ G E++L+G PV D P+ V R I Sbjct: 425 LLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIR 484 Query: 542 SFDP 545 +FDP Sbjct: 485 AFDP 488 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 158/569 (27%), Positives = 256/569 (44%), Gaps = 98/569 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+++I I+P+TRI G + ID IEN V A G ++RG E+++ R P DA QRI Sbjct: 1 MNKKIVINPLTRISGFMEIDVYIENNRVVDAKTKGHLFRGFEQMLVGRSPFDAVYFTQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H+++S A E ALNI +Y+R+II +H+ HFYQ + D+V + Sbjct: 61 CGICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLE 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S + H +LP Sbjct: 121 SNSLFNT---------------------------------------------DHHDFRLP 135 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N HY ++LE R A++++A+LGGK PH + +GG+ + + Sbjct: 136 KQINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIGGITTQATAEN--------V 187 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS-FLF 299 + + + K+S F+ D IAA+Y ++ G G N L+ F G+ ++ Sbjct: 188 VKLDDSLQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGNLLTYGAFNNYKDLGTLYVD 247 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPAYDGWSD 358 P NA+ + P K I+E +SWYK A P + + D + Sbjct: 248 PLISKMNANNNLVEPFQE-------KNIKEKIDYSWYKASNAAYRPD--SEMAEPDMEMN 298 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + YSWVK+P + G EVGPLA +++ E Sbjct: 299 EKAYSWVKAPRYEGLPFEVGPLARLILSG--------------------------EYQNG 332 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 S + R + R + ++ +I++ ++I N+ + P + G G ++ Sbjct: 333 ISAMDRTLARALEAKKICEIMKELLHSVIPNVDL--QKAYEIPE-----QASGRGLVDTI 385 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L HW+ +++ IS YQ + PSTW+ ++ G E++L+GTP+ DPN P EV R Sbjct: 386 RGALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGTPINDPNNPAEVGR 445 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVKVL 567 + SFDPCM+CA HV G ++ ++KV Sbjct: 446 ILRSFDPCMSCATHVYSP-GKQMKTIKVF 473 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 252/568 (44%), Gaps = 99/568 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + ITIDP+TRI G L I ++E+ ++ SG ++RG E++++ R P D+ +RI Sbjct: 1 MGKIITIDPITRISGFLEIKVKVEDNIIVDGETSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T HA +S A E+ALNI +N YIR+++ +H+ FY + +V++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + P + S+ +LP Sbjct: 121 NIRPIYPQEYSD--------------------------------------------FRLP 136 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N +HY + ++ R A+ +A+LGGK PH + VGGV I+ +L Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDS--------YKL 188 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 I+S + + FV D +IA +YPE+ G N++S F Sbjct: 189 TKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVK 248 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY-KDEAPQAPWEGTTIPAYDGWSDD 359 G I N L + + I E+ +++WY D + P + Sbjct: 249 PGVIINNKLEN----------FDRDKITENIRYAWYVSDTIIENPIMNNEYTV--DLKKE 296 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G YS+VK+P + +EVGPLA + + E + Sbjct: 297 GAYSFVKAPRYADLPMEVGPLARLKIAG--------------------------EYTGGN 330 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S++ R I R + ++ +IL N + + + + + P G G ++ R Sbjct: 331 SSMDRNIARVLETKKIINILYNISEKI--QLLSNNQSAYNIPE-----GAFGEGLIDTTR 383 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G LSH++ I++ I Y + P+ WN P++ G E+SL+G+ + + KP+E+ R Sbjct: 384 GALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGSKIDNIEKPVEIGRI 443 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKVL 567 I SFDPC++CA H+V ++ NE V V+VL Sbjct: 444 IRSFDPCISCATHLV-SNNNEPVKVEVL 470 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 157/557 (28%), Positives = 244/557 (43%), Gaps = 98/557 (17%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I I+P TR G +++ +E G V A T++RG E I+++RDPRDA I QRIC Sbjct: 8 GQKIVINPTTRTLGASQVEVRVEAGRVIHARCGATVFRGFELILRDRDPRDAAYITQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T HA+++ A E + P N +RN+I A +HI HFY + D+V Sbjct: 68 GICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYVRGPE 127 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 P ++ +LP Sbjct: 128 CRPLVPPPTTD--------------------------------------------YRLPR 143 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 N V Y QA++ R A + ALLGGK PH + GG + P+ ++ Sbjct: 144 AKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPGGSSVPVTA--------ITVL 195 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + S + + FVE+ D +A YP++ G ++L+ FP D + FPG Sbjct: 196 NLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFLNFGLFPLDPEASGHHFPG 255 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + + + + I E +++ ++ E P G T P D G Sbjct: 256 AAVIDGRMEAV----------DSGEISEHLRYTHFEGEQLAHPARGETRPNPD---KPGG 302 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW K+P + G+ +E GPLA + V+ + + S Sbjct: 303 YSWCKAPRYRGRALEGGPLAQLWVRG--------------------------DYRRGVSV 336 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R+I R + E+ +++ +AL + F + +P +G GVG A RG Sbjct: 337 MDRLIARALISREVAGLMRKWLTAL-----RPGQPVFNRYQVPESG--TGVGLTGAMRGG 389 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L HW+ ++ G I +YQ V P+ WN P + GP E++L+GTPVAD +P+E+ R +H Sbjct: 390 LGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEALIGTPVADAKEPVEIGRVLH 449 Query: 542 SFDPCMACAVHVVDADG 558 SFDPCM+C HV+ D Sbjct: 450 SFDPCMSCVAHVIVLDE 466 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 165/558 (29%), Positives = 248/558 (44%), Gaps = 100/558 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+ + T+ PVTRI +R++ +++ G V AW ++RG+E ++ RD RDA + VQRI Sbjct: 1 MTVK-TLFPVTRIHEPIRVEVDVQGGRVVDAWIGACLFRGVELMLTGRDVRDAPLFVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C++ HA+++ +A SA + QY+ N+++AA +H+ HFY L D+V Sbjct: 60 CGICSSAHAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGP 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + P + +LP Sbjct: 120 DSAPFFPRTKGD--------------------------------------------FRLP 135 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N H AL+ A+ ++AL G K PH Q + GV N ERL Sbjct: 136 KKLNDELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMPTGVTERA--------NAERL 187 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 M + + ++ ++VE+VY D IA +Y ++ T G+G ++LS FP + G FP Sbjct: 188 MAYGAILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGHFLSYGGFP-EPGTGQPAFP 246 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY-KDEAPQAPWEGTTIPAYDGWSDD 359 G +EN L +T I E H WY D+ + P EG T A D Sbjct: 247 VGLVENGGLPQPLDLT---------RITEHIHHGWYQDDQESRHPIEGRTAAAPD---KS 294 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YSW K+P + E GPLA + E + Sbjct: 295 AAYSWCKAPRYGRLPAETGPLARAWISG--------------------------EYRRGI 328 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S + R+I R ++ + Q + + T +P GE GVG LEA R Sbjct: 329 SVMDRLIARAREALKICRLAQEWLARIA-----PGAPTLAPYTLPPRGE--GVGLLEAMR 381 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ ++G IS+YQ V P+ WN PR+ GP E++L+GTP+A P +EV R Sbjct: 382 GALGHWLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPIAAPESLIEVGRV 441 Query: 540 IHSFDPCMACAVHVVDAD 557 I SFDPC CA H++ A Sbjct: 442 IRSFDPCFTCAAHLISAP 459 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 140/550 (25%), Positives = 239/550 (43%), Gaps = 94/550 (17%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I IDPVTRI G L+I+ ++EN + A ++G+ +RG E++ + R P D + RICG+ Sbjct: 3 KIVIDPVTRISGLLKIEVDVENNKIVDAKSTGSQFRGFEKMFQGRPPLDIIRLAPRICGI 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+T+HA+++ A E+ALNI N + IR+I +H+ Y + D+V IT++ Sbjct: 63 CSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASN 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + L +LP ++ Sbjct: 123 PLYKDGTDKEL-----------------------------------------DYRLPEDI 141 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 YL+A++ R+ +R +A+L GK PH + VGG++ I++ + Sbjct: 142 TKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEKES--------V 193 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 K I + +F+E D +IA +Y ++ GKG N + + + P Y Sbjct: 194 KYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLY------SDYKAPIKY 247 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 E + + I + + I E+ K+S+ ++ P + + D YS Sbjct: 248 TEASAM-----INGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDA-YS 301 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 WV + + ++E GPLA ++ Y+ S + Sbjct: 302 WVDAARYKNYSMEGGPLARQILN----------------GYYENKI----------SAMD 335 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 RI+ R + ++ + + + K + IP + G+G + APRG L Sbjct: 336 RILARVLESVKICESIIGLID-----LMKLGQAVQEEWQIP--SKVNGIGLIGAPRGALG 388 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 HW+ I++ +SNY + PS WN P + N+ GP E +L+GT + D P+E+ R + SF Sbjct: 389 HWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTEINDMKNPVEIGRIVRSF 448 Query: 544 DPCMACAVHV 553 DPC CA HV Sbjct: 449 DPCSNCAAHV 458 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 167/564 (29%), Positives = 276/564 (48%), Gaps = 61/564 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+ RI IDP++R+EGHL+I+ I++GV+++A A+G ++RG+E+ + D R A + QR+ Sbjct: 1 MTTRIVIDPLSRVEGHLKIETTIKDGVITEARAAGLLFRGLEKALIGYDARVAQQVTQRV 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA ++ A E+A+ I P N Q +RN+I A+ HD ++HFY LSALD++DI Sbjct: 61 CGVCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIK 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG--YWGHPAMK 178 L+ + S +V++ ++ + S ++ A + Sbjct: 121 KVLR----------------YRGSDPVLNRVRDWVQAELRSERIFPGAPFLPRYRDDDQS 164 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 +L+ V +Y + D +++VA+ GGK PH + GGV L Sbjct: 165 WDQSDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHPVAIEAGGVTTRPT--------LG 216 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 L + ++ ++++ FV Y+ D + +P + G+G N LS P F ++ + L Sbjct: 217 MLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLLSFP-FLPEADGENHL 275 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK--DEAPQAPWEGTTIPAYDGW 356 F GG + + I E S+Y+ + +P AP + + Sbjct: 276 FAGGARLAGEYRQLE----------LDAISEDHTFSFYRQPEPSPLAPLATHLLTPLNRQ 325 Query: 357 SD-------DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLT 409 DGKYSW+++P ++G+ +EVG +A ++ R + E V + Sbjct: 326 EFQAENERLDGKYSWIRAPRYHGEVMEVGAVARVINSYHHNR-----AVKEEVDRTNREL 380 Query: 410 GNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF 469 G TL A +S +GR +GR + + + L+ Q + + F + +P Sbjct: 381 GLTL--ADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGV-----LGFSELEVPRN--A 431 Query: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 GVG EA RG L HW+ +G+I NY+ V+PSTWN PR+ G E+ L GT + Sbjct: 432 VGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQGTRIK 491 Query: 529 DPNKPLEVVRTIHSFDPCMACAVH 552 +P +PLE R S DPC+AC+VH Sbjct: 492 NPEQPLEAARIARSADPCIACSVH 515 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 168/554 (30%), Positives = 274/554 (49%), Gaps = 51/554 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++TIDPVTRIEGHL+++ IE+ V+ +A S M+RG+E+ ++ D A I QR CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIEDSVIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCGC 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA ++ A E+AL I++ N + +RN+++ A+ D+++HFY LSALD+++I+ L Sbjct: 62 CPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDIL 121 Query: 124 QADPTKASEM-LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + + LK ++S + F +F+ Y A + Sbjct: 122 NYNGNDFDMLELKKYVLKEISSKKVFPN--------------PLFSQKYKN--AYIKNKD 165 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 +N+ + HYL++ E + + +V + G K+ H+ + GGV ERL+ Sbjct: 166 LNITLINHYLKSFEAMKKMSEMVKIFGSKSTHMVTIEAGGVTTRPTA--------ERLVK 217 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 S + F+E Y D +A + E+ GKG N+L+ +GS+LF GG Sbjct: 218 YISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDNFLTFDTLLN--LDGSYLFTGG 275 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG-- 360 + + D I + I E +++YK+ P E T + Sbjct: 276 F--SKDFEYEEGIEPY-------NIIEYNNYAYYKENGGYKPLELTELTPLTFDEFKQNH 326 Query: 361 -KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 KYSW K+P + G VEVGP A ++ G++ KL +V + + G +++ + Sbjct: 327 TKYSWSKAPRYKGHVVEVGPAAIVINNYLRGKD---EKLISLVDKFNRELG--IDIKDYN 381 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S +GR + R + + D + +L+ GK KP KG+G EA R Sbjct: 382 SVMGRHLSRAIISKLIIDKIIE--DSLMVEEGKLGFIQLKKPP----SNVKGIGLTEATR 435 Query: 480 GMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L+H++ I ++G I NY+ +VP+TWN P++ + G E L+GT + D N P+E+ R Sbjct: 436 GALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESMLIGTEIRDINNPVEIAR 495 Query: 539 TIHSFDPCMACAVH 552 I S DPC+ACAVH Sbjct: 496 IIRSTDPCLACAVH 509 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 172/563 (30%), Positives = 279/563 (49%), Gaps = 59/563 (10%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S+RITIDP++R+EGHL+I+ +E+GV+++A A+G ++RG+E+ + D R A + QR+C Sbjct: 7 SKRITIDPLSRVEGHLKIETRVEDGVITQARAAGLLFRGLEKALIGYDARVAQQVTQRVC 66 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC HA ++ A E A+ I N Q +RN+I A+ HD ++HFYQLSALD++DI + Sbjct: 67 GVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSALDFIDIEA 126 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH-PAMKLP 180 L + V+ +++ V S ++ A + +LP Sbjct: 127 VLA----------------YKGGDPVLAAVRQWVEEEVRSSRIFPGAPFLPRYRHDDQLP 170 Query: 181 PEVN-LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 + + L+ V +Y D ++VA+ GGK PH + GGV L Sbjct: 171 GDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHPVAIEAGGVTTRPT--------LGM 222 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 L ++ + + FV Y+ D + +P + G+G N+LS P F ++ + LF Sbjct: 223 LAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGNFLSFP-FLPEADGDNHLF 281 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP--QAPWEGTTIPAYD--- 354 GG + N + ++P+ + I E +++Y+ ++ P + + D Sbjct: 282 AGGALLNGE---HQPLE-------LDAINEDHTYAFYRQQSGTALPPLATSRLTPLDWQE 331 Query: 355 ----GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 GKYSW ++P + G+ +EVG A ++ G L E+V + G Sbjct: 332 FQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQG---GNQALKELVDHTNRELG 388 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 T VA +S +GR + R + + L+ Q + + F + +P + Sbjct: 389 IT--VADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGV-----LGFEEREVPRN--AR 439 Query: 471 GVGFLEAPRGMLSHWMV-IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 GVG EA RG L HW+ KDG+I NY+ VVPSTWN GP++ G E+ L+GT +++ Sbjct: 440 GVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPGAVEKMLLGTRISN 499 Query: 530 PNKPLEVVRTIHSFDPCMACAVH 552 P +PLE R S DPC+AC+VH Sbjct: 500 PEQPLEAARIARSADPCIACSVH 522 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 191/494 (38%), Positives = 265/494 (53%), Gaps = 56/494 (11%) Query: 87 NAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKAS-EMLKGVSTWHLNSP 145 NA+YIR++IL+ HDHIVHFY L +DW+D+ SAL ADP KA+ E +K +T Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 146 EEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVV 205 E VQ K++ LV +G LG FAN YWG+P K PE NLI ++HYL+ALE QR A + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 206 ALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI 265 AL GGK PH Q++ VGGV ++ L+ RL K +++FVE+ Y D + Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDM-----LDPARLQEFKQKFQHVAEFVERAYYADLVMA 175 Query: 266 AAFY---PEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEY 322 A Y P+ L G +++ + + LF G I N DLS H++ Sbjct: 176 AKAYATSPDVLG-GCNVHTFMAAESILLNPDD--HLFTDGVIRNCDLS-------HAENV 225 Query: 323 LIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW-------------SDDGKYSWVKSPT 369 I+E H+WY + PQ P++GTTIP + ++ GKYSWVKSP Sbjct: 226 DPSLIEEDVTHAWYDAKQPQHPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWVKSPR 285 Query: 370 FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 + G+ VEVGPLA + V A G + + ++E LT L L +TLGR R Sbjct: 286 YNGEPVEVGPLATIAVNYARGNKPVVDVVDEF------LTKTGLPAQALFTTLGRTAARM 339 Query: 430 VHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK 489 +H + + +++ N+ D TT++KP I E+KGVG LEAP + Sbjct: 340 LHTTVIARHGLETFESMVANL-NSDQTTYIKPTIDPDKEYKGVGILEAP---------LS 389 Query: 490 DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 G +N + W P + N +GPYE SLVG +A+P KPLE++R IHSFDPCMAC Sbjct: 390 SGCPNNLE-----RW---PYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCMAC 441 Query: 550 AVHVVDADGNEVVS 563 +VHV+D G + Sbjct: 442 SVHVMDYKGQSLSE 455 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 146/564 (25%), Positives = 237/564 (42%), Gaps = 101/564 (17%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++ I P TRI + ++ +ENGV+ A+ S T++RG E+I++ R D QRICG Sbjct: 16 EKKVIFPFTRIHNPMLVEAYLENGVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRICG 75 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C++ HA+++ A E AL + VP N RN+I+ + +HI HFY +S D+ Sbjct: 76 ICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDI 135 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 P ++ + E Sbjct: 136 PPFTPHLEGDI--------------------------------------------RFNTE 151 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 N HY +A+E RDA+ + GGK PH + GG ++ D ++ Sbjct: 152 ENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHVDAD--------KINR 203 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 + ++ ++ +F+ D + YPE++ GKG N+LSV F +G LFP G Sbjct: 204 FRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKGNGNFLSVGGFT--QPDGGTLFPHG 261 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 + + + + I E +WYK P PW+GTT P + Y Sbjct: 262 VV----------LEDKHQPFDDRLILEEVTTAWYKPTPPAHPWQGTTEP---DKNQPQGY 308 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 +WVK+P + G +EVGPLA ++ E + TL Sbjct: 309 TWVKAPRYQGHALEVGPLARAVIAK--------------------------EKIIGYGTL 342 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 GR R + ++ + L+ + + G+G++EA RG L Sbjct: 343 GRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQE-------SGMGIGYVEAMRGTL 395 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 HW+ I+ G + +YQ + PSTWN R+ + E S+ G + P E R I S Sbjct: 396 GHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKHPELK-EAGRVIRS 454 Query: 543 FDPCMACAVHVVDADGNEVVSVKV 566 FDPC +C+VH++D + + ++V Sbjct: 455 FDPCFSCSVHLIDGEQLRTLDIRV 478 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 152/589 (25%), Positives = 242/589 (41%), Gaps = 84/589 (14%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + I P+ R+EG L + I +GVV+ AW +M+RG E I+K +DP+ ++ RIC Sbjct: 13 GRDLRISPLGRVEGDLDLRVTIRDGVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPRIC 72 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C +H +V A ++A ++P NA IRNI A T FY L A+D +T+ Sbjct: 73 GICGGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAID---LTN 129 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A + E ++ + + S E + NK ++ A G W H + +P Sbjct: 130 KKYAHLPEYDEAVRRFAPFVGTSYEHGVTLSNKPVEIYA------IFGGQWPHSSFMIPG 183 Query: 182 EV----NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 V L V + LE +D LG ++ Sbjct: 184 GVMCAPTLADVTRAIAILEYWKDEWLEKKWLG-------------------------CSV 218 Query: 238 ERLMYIKSFIDKLSDFVEQ--VYKVDTAVIAAF--YPEWLTRGKGAVNYLSVPEF----- 288 +R + KS+ D + E Y D F G G NYL+ + Sbjct: 219 DRWLQNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYGAGWNNYLATGTYFHPEL 278 Query: 289 ----PTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAP 344 + +N + + G N + ++E HS+Y+ P Sbjct: 279 YARPTIEGRNAALIARSGVYVNGQFYD----------FDQAQVREDVSHSFYEGNHVLHP 328 Query: 345 WEGTTIP-AYDGWSDDGKYSWVKSPTF-----YGKTVEVGPLANMLVKLAAGRESTQNKL 398 +EG T P + GKY+W K+P + +E GPLA ++ G Q+ Sbjct: 329 FEGRTEPIDPEVGRRQGKYTWAKAPRYLIPGVGSHPLEAGPLARQVIAGRPGAADWQDYD 388 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 + S L R++ R + +++ + + + Sbjct: 389 PLFLDA---------VTTVGPSVLVRVMARMHEAPKYYKLVRKWLDQINLH-----EKFY 434 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 +KP E +G G EA RG LS W+V+KDG I NYQ + P+ WN GPR+ + GP Sbjct: 435 IKPKELP--EGRGFGSTEAARGSLSDWIVLKDGKIENYQVITPTAWNIGPRDSREVNGPM 492 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDAD-GNEVVSVKV 566 EQ+ +G P+ADPN P+E+ S+D C+ C VH D G E+ ++ Sbjct: 493 EQAFLGAPIADPNDPVELGHVARSYDSCLVCTVHAYDEKTGKELARFRI 541 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 159/557 (28%), Positives = 259/557 (46%), Gaps = 83/557 (14%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ +T+DP+TRIEGH+ ++ +E+G VS+ +G M+RG E ++ R P D+ I QRI Sbjct: 1 MSKLLTVDPLTRIEGHMSVETAVESGKVSEVRIAGNMYRGFERMLLGRHPVDSARIAQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC H +SSV A E I P N +R++IL H DHI+HFY L D+V+++ Sbjct: 61 CGVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLS 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQ---NKIKDLVASGQLGIFANGYWGHPAM 177 SA A L+ +S W +S F + + N IKD ++ + + Sbjct: 121 SA--AGYNGKDRDLRNISDWLSSSGTAFMQNRTEGNYIKDKDSARRFAL----------- 167 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +Y +A++ + A +A+LG K P I L GG+ I D Sbjct: 168 ------------NYFEAIKIRSQAAGGLAILGAKVPFIHALMPGGITTEITTDA------ 209 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 LM +D ++FV + D IA +PE+ G+ + + F + + Sbjct: 210 --LMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGEAYNTFYAHQSFNSAKGD--- 264 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 LF G I + + ++ ++E S+YK A +P E + Sbjct: 265 LFTQGVIADGE----------KVDFDYNKVKELIGSSYYK--ADGSPDE----------N 302 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 +G YSW+K+P + G +E GP+A V E ++ ++L +++ Sbjct: 303 AEGAYSWIKAPRYDGIPLETGPIARAAVGND----------EEFKSLLRRLGQKSIK--- 349 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S +GR++ R L + L + + ++ A +G+GF A Sbjct: 350 -SSVMGRLLARAHESVMLCNYLYGRTEEYVI-----GKPAIRAVDLQAPVSGEGIGFSVA 403 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV--ADPNKPLE 535 RG L H + G +++Y+ +VPSTWN GP + +G E++++GTPV + +E Sbjct: 404 ARGALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGTPVNYGGVSGSIE 462 Query: 536 VVRTIHSFDPCMACAVH 552 V R I SFDPC AC++H Sbjct: 463 VGRVIRSFDPCTACSIH 479 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 134/567 (23%), Positives = 236/567 (41%), Gaps = 100/567 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M ++IT PVTR+ G L ++ ++ G + A GTM+RG E I++ R DA + QRI Sbjct: 1 MVKKITFSPVTRLSGLLSVEIVVDRGKIVNARTRGTMFRGYEWIMRGRKVTDAVYMTQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H + + NAQY+RNI+ AA +HI HFY D+V + Sbjct: 61 CGICSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKMP 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 +++ +L Sbjct: 121 EKPPFLGQDLNDL--------------------------------------------RLN 136 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 E N V +Y +A++ +++++++AL GGK P+ + GGV D ++ Sbjct: 137 REDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHGGVTVAPTAD--------KI 188 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 K+ I+ + FV+ DT +I+ Y ++ G + +S FP +N +L+P Sbjct: 189 NQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGVTPLRLISFGLFPFGPQNDDYLWP 248 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPAYDGWSDD 359 G I N + + ++ I+E +S+Y+ ++ + + PA Sbjct: 249 PGVIINNEFELPQ----------VEFIEEQVPYSYYEANDEGENVFNQYPEPAP---FKP 295 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS++K+ + G+ E GP A +++ + Sbjct: 296 EAYSYIKTVLYKGQHFETGPYARGVIRG--------------------------DYRGRA 329 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 ST+ RI+ R++ +L ++ + L + + P + V A R Sbjct: 330 STMDRIVARSLEALKLAGFIREWLTRL-----EPGPPPLNQNEEPVKD--RAVATTGAMR 382 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV-R 538 G L H +I+ + +Y + P+TWN PR+ N + GP E++L+GT + +V R Sbjct: 383 GALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALIGTEIPGGAMLETIVGR 442 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVK 565 I SFDPC++C HV DG ++ Sbjct: 443 IIRSFDPCISCGTHVYSIDGKLQKKIE 469 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 174/574 (30%), Positives = 260/574 (45%), Gaps = 69/574 (12%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + IDPVTRIEGH + ++E+GVV A + TM+RG E IV RDP+DA +++QRICGVC Sbjct: 3 VVIDPVTRIEGHHGVRLKVEDGVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGVC 62 Query: 65 TTTHALSSVRAAESA------LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 H L+S+ A E+A +P A +RN I A DH V Y L+ D+ D Sbjct: 63 HNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYCD 122 Query: 119 I---TSALQADPTKASEMLKGV-STWHLNSPEEFT--KVQNKIKDLVASGQLGIFANGYW 172 T ++ DP + + V + L+ + KV + + + L I AN Sbjct: 123 AIHKTGLVRFDPIVGRGVKEAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIIS 182 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRD-ANRVVALLGGKTPHIQNLAVGGVANPINLDG 231 ++ L + + V ALE RD A V+ + K GV P N Sbjct: 183 KLISIVLDVKKWALGVGLGKTALEHARDVAGYVIDDVSKKLEK-------GVVEPPNDPE 235 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 +G + +Y + + ++ G+ L+ F D Sbjct: 236 VG---------------------KGLYDLVSLILVMANLGLKDMGERTPTMLAYG-FLAD 273 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA-PWEGTTI 350 NG FP G+ +L +++ + I E K+S+Y DEA + E T Sbjct: 274 P-NGELFFPSGFFNGKEL----------EKFDYRNIGEDVKYSYYDDEAGGSYVGEEDTR 322 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 + G Y+W K+P + G EVGPLA M+ K ++ + + + + L G Sbjct: 323 KLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKGYRD----GWEVGDPLDLRKNLAG 378 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + L R I R L D L+N L GK +VK I + Sbjct: 379 G----RTASNALARNIARIQEELVLIDYLENLLLELKDYAGK---KAYVKYEI---NDGD 428 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 GVG EAPRG L HW+ I+ G I NYQ + P+TWN PR+ D +GP E++L+GTP+++ Sbjct: 429 GVGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRDSKDQMGPLEEALIGTPISES 488 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 ++ V+R IHSFD C+AC VHV + + + Sbjct: 489 DQ-WNVIRVIHSFDLCLACTVHVYSEKSSWTIKI 521 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 158/577 (27%), Positives = 249/577 (43%), Gaps = 67/577 (11%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + + P+ R+EG L + +E+GVV++AW M+RG E I+K +DP+ ++ RICG+C Sbjct: 12 LHVSPLGRVEGDLDLRVTVEDGVVTQAWTEAGMFRGFEMILKGKDPQAGLIVTPRICGIC 71 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 +H S A + A ++P NA +RNI A T FY L A+D +T+ Sbjct: 72 GGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALFAID---LTNRRY 128 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVN 184 A E ++ + S E + K ++ A G W H + +P V Sbjct: 129 AKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYA------IFGGQWPHSSFMIPGGV- 181 Query: 185 LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 D R +A+L + H N + LG +++R + IK Sbjct: 182 --------MCGPTLSDVTRSIAILE-EFRH----------NWLESRFLGC-SVDRWLEIK 221 Query: 245 SFIDKLS--DFVEQVYKVDTAVIAAFYPE--WLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 ++ D L+ D E + D F E G G NYL++ + K Sbjct: 222 TWEDVLAWVDENESQHNSDLGFFLRFGLEIGLDRFGAGCGNYLAMGTYLHHEKYNRPTIE 281 Query: 301 GGYIENADLSSYRPITSHSD--EYLIKGIQESAKHSWYKDEAPQAPWEGTTIP-AYDGWS 357 G NA L I + E+ ++E S+Y+ P+EG T P Sbjct: 282 G---RNAALIQRSGIYAGGKHYEFDQARVREDHTFSFYQGSGLLHPFEGRTEPIDPADAK 338 Query: 358 DDGKYSWVKSPTFY-----GKTVEVGPLANMLVKLAAGRE--STQNKLNEIVAIYQKLTG 410 GKY+W K+P + +EVGPLA +V G E ++I+A Sbjct: 339 RQGKYTWAKAPRYDVDGLGSVPLEVGPLARQVVAGKPGEEWQDVDPLFSDIIA------- 391 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + S L R++ R +L ++ L + ++KP G + Sbjct: 392 -----KKGPSVLVRVLARLHEEAKLYKNVREWLGELDLH-----DRFYIKPVEHEFG--R 439 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G G EA RG L+ W+V+++G I+NYQ V P+ WN GPR+ + GP EQ+ +GT + DP Sbjct: 440 GFGATEAARGALADWIVLENGKIANYQVVTPTAWNIGPRDSRNVNGPMEQAYLGTTIHDP 499 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDAD-GNEVVSVKV 566 P+E+ SFD C+ C VH D+ G E+ ++ Sbjct: 500 GDPVELGHVARSFDSCLVCTVHAYDSKTGKEIGVYRI 536 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 158/602 (26%), Positives = 250/602 (41%), Gaps = 74/602 (12%) Query: 3 QRITIDPVTRIEGHLRID--CEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 + I DPVTR+ G L ++E V + T++RG E I+K RDPRDA I R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTNSMATLFRGYEVILKGRDPRDAAYISSRA 110 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC HA ++ A E AL I P +RNI+LA +DH +H + L+ D+ Sbjct: 111 CGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDY---- 166 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SE L + L TK +NK +GY + + Sbjct: 167 ----------SEELVRETNPELIDKAATTKAKNK------------DVHGY--DTVLDIM 202 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N + YL+AL R A L+GGK PH Q++ GG++ + N L Sbjct: 203 KDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTV--------NASML 254 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAF---YPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + S + K D+ ++V + V F PE+ G + + + Sbjct: 255 NEVYSRLIKFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRPDHYDAK 314 Query: 298 LFPGGYIENADLSS-----YRPITSHSDEYLIKGIQESAKHSWYK--------------D 338 A S+ + + L G++E +HS+Y+ Sbjct: 315 FENCDTWGEARWSTPGVLVDGEVVTTKLTELNAGMEEFVEHSYYEKWDGHRFKEDPNGMP 374 Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 +P PW TIP S +YSW +PT+ +E G M + A + L Sbjct: 375 LSPNHPWNKETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMTAKAQKAPASKFL 434 Query: 399 NEIVAIYQKLTGNTL--------EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI 450 + L ++ + + R R + + + I Sbjct: 435 ENTGTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAMENWMMAMDLI 494 Query: 451 GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRN 510 GD V IP G G G A RG L+H ++I++G+I NYQ + PST N+ PR Sbjct: 495 KNGDTKVSVPYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIENYQIITPSTLNAAPRT 554 Query: 511 FNDDVGPYEQSLVGTPVADP-NKP-----LEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 ++GPYE++++ TP+ + +KP ++++R I SFDPCM C H++ D + +V+ Sbjct: 555 PWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCTTHIMAKDSDHMVTR 614 Query: 565 KV 566 +V Sbjct: 615 EV 616 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 238/568 (41%), Gaps = 73/568 (12%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+RI + + R+EG L I+ EI+NG+V+ A GTM+RG E+I+ R P DA I RI Sbjct: 1 MSRRIKLQ-LNRVEGDLEIELEIKNGIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T H +SV A ES NI P NA +RNI L + + + D Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICLLSEEIQSDCRQTFLMFTPDLCH-- 117 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + ++ ++ + I ++VA G W H + +P Sbjct: 118 -SSYSTLNDYQSIVAKFQDMQGELYQDAIRFSRDIIEIVA------IFGGQWPHSSYMVP 170 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V + + + R K + +L Sbjct: 171 GGVTSLPDR--RKVINSLAQLQRYTQWFEHK--------------------ILGTSLADW 208 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEW--LTRGKGAVNYLSVPEFPTDSKNGSFL 298 I S + +L++F + A++ F + + G G+ +S + Sbjct: 209 SRITS-LAELNNFTQSS-DSAIAILHRFCRDMGLDSVGSGSEKMISYGSLIDPENPQERI 266 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA--PQAPWEGTTIPAYDGW 356 G N L + P+ I E SWY DE+ + P +G T P YD Sbjct: 267 RSDGTY-NYKLKKHAPLDE-------SKITEDITSSWYHDESQTARHPMQGLTQPKYD-- 316 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 D KYSW K+P + ++ GPLA + V + +++A Sbjct: 317 PDSEKYSWAKAPRYDKDVIQTGPLAQLAVAK-------DPLILDMLA------------Q 357 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 ST R R IL++Q S+L+ + D T + + + +GVG +E Sbjct: 358 NGSSTWTRQFARIHRQASSLIILKDQLSSLLECL---DAPTMIHCPLE---DGEGVGMIE 411 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 A RG L HW+ I+DG I N+Q + P+ WN+ PR+ N G EQSL+G P+ D ++P+E+ Sbjct: 412 AARGSLGHWLKIEDGKIKNFQVITPTAWNASPRDINQQPGHIEQSLIGLPMPDLDEPIEI 471 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSV 564 + S DPC+ C VH++ + V Sbjct: 472 GHVVRSHDPCLVCTVHLLGSGKKHRFGV 499 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 162/588 (27%), Positives = 236/588 (40%), Gaps = 124/588 (21%) Query: 4 RITIDP-VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 RI ++ + R+EG L I +E+GVV A +GTM+RG E+I+ R PRDA +I R+CG Sbjct: 3 RIELNVDLNRVEGDLSIQVTLEDGVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C T H + V A E A N VP NA IRN+ L A + + + A D Sbjct: 63 ICGTAHLYAGVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPDLC----- 117 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 P A ++L F + I Sbjct: 118 ---HPRYAGDVL------FEPMMRAFEPFKGDI--------------------------- 141 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 Y + L R +VA GG+ PH + GGV P + RL+ Sbjct: 142 --------YRETLAMTRRVLEIVAHFGGQWPHSSYMLPGGVVTPPDT--------RRLIA 185 Query: 243 IKSFIDKLSDFVEQVYKVDTAV------IAAFYPEWLTR--------------------- 275 +S ID+L + EQ A EWL R Sbjct: 186 CRSVIDQLQRWYEQRIIGAGLDEWMALGSADALFEWLERPGPANAALGLITRFLRSQGMH 245 Query: 276 --GKGAVNYLSVPEFPTDSKNG----SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQE 329 G G + +S + + G + L PGG+ ++D +P+ + E Sbjct: 246 RLGIGTPHMISFGAWCDPQRWGPPYDAHLLPGGFY-DSDSGQVQPL-------DPSLVTE 297 Query: 330 SAKHSWYKD-EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLA 388 +HSW+K E + P+EG T+P Y D +YSW K+P + G+ V+ GPLA +L+ Sbjct: 298 HVRHSWFKPYEGGRHPYEGETVPDYQ--PDSDRYSWAKAPRYGGRVVQTGPLAELLIGGD 355 Query: 389 AGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALIT 448 A L + R R + L Sbjct: 356 ALV-------------------RDLHATEGAGAWLRQFSRVRRIGFELRQARRMLDELGA 396 Query: 449 NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP 508 ++G FV P + +G G + A RG L HW+ I++G+I YQ V P+ WN+ P Sbjct: 397 HLG---EPHFVPPAPGTEVDGQGCGLVMAARGALGHWVRIENGVIQKYQIVTPTAWNASP 453 Query: 509 RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 R+ + G +E SLVG V DP+ P+E+ I S DPC+ C VH VD+ Sbjct: 454 RDSDGVPGHWESSLVGLKVQDPDDPIEIGHLIRSHDPCLVCTVHFVDS 501 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 163/609 (26%), Positives = 260/609 (42%), Gaps = 75/609 (12%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T+DP+TRIEGH RI+ E+ E GV++ A ++G RG E +++++DPRDA ++ QRICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD----- 115 VC +H +++ A + + +VP++ +RN+ A + H H Y L D Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDLANPA 122 Query: 116 -------WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA 168 + D+ +A+ + L + S + I + + Sbjct: 123 YRDILAKYGDVGNAVWKELQGRFAPL--IYQLDGTSYPAGSSYLGSIVEFRRLHEAISLI 180 Query: 169 NGYWGHPAMK-LPPEVNLIAVAHYLQAL-ECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 HP ++ + V VA Q L + V A G +P I ++P Sbjct: 181 ASKMPHPVLQHVGGVVYSPTVADIGQILSYITKTMEFVEAFTLGVSPDIWIENTYRASSP 240 Query: 227 INLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL------------- 273 + +L+ L+ KS +K DF D + AAF E + Sbjct: 241 QKAANFVLNHLQELLN-KSLDNK--DFSHSAGWGDVPLFAAFGSELIGEKLLGLPISMKM 297 Query: 274 -----TRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSS-YRPITSHSDEYLIKGI 327 + G + +LS F +NG+ P ++ +SS Y +++ K I Sbjct: 298 DLAGTYKDPGKIGFLSYGVF-FKPENGNGYDPTSPADSRVISSGYMNGYFKLEKFDYKKI 356 Query: 328 QESAKHSWYKDEAP-QAPWEGTTIPAYDGWS------DDGKYSWVKSPTFYGKTVEVGPL 380 ES HS+Y D+ + PW G T+P + + +YSW K+P + G EVGPL Sbjct: 357 SESINHSFYIDDVKDRPPWNGVTVPEGNPENIDYTKGSKSRYSWTKAPHYDGIPCEVGPL 416 Query: 381 ANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQ 440 A M++ + + R+I R + L Sbjct: 417 ARMIIMGEPLVTGLVKTFQDNGYY-------------PVNNYTRMIARMQEILVVVPELT 463 Query: 441 NQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAV 499 + I GK T ++ G+G EAPRG L HW+ D +++ YQAV Sbjct: 464 KWLTQDIQAGGKVAVHT----DLSMAKSSTGMGLWEAPRGALGHWVATGPDSMVTLYQAV 519 Query: 500 VPSTWNSGPRNFNDDVGPYEQSLVGTPVA--------DPNKPLEVVRTIHSFDPCMACAV 551 VPSTWN PRN + P EQ+L+GT ++ D + PL ++ T S+DPC+ACAV Sbjct: 520 VPSTWNLAPRNSQEIPSPVEQALIGTKISAAENALGVDYSNPLGILHTARSYDPCLACAV 579 Query: 552 HVVDADGNE 560 H +D G Sbjct: 580 HTIDKTGKH 588 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 156/579 (26%), Positives = 244/579 (42%), Gaps = 82/579 (14%) Query: 1 MSQRITID-PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+ R +D PV R+EG L + EI +G+V AW++GTM+RG E ++ R D ++ R Sbjct: 1 MAVRKILDVPVNRVEGDLELRLEIADGMVVDAWSAGTMFRGFERLLIGRGALDGLVVTPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C+TTH +++ +A ++ VP N +RN+ L A + + +D+ + Sbjct: 61 ICGICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFANP 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A +A P E ++ + + E + + +++A G W H + + Sbjct: 121 --AYRAQPL-YDEAVRRYAPLAGEAVAEAVRETKHVVEIIA------IIGGQWPHSSFMV 171 Query: 180 PPEV-NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 P + VA LQ H+ + G I +L+ Sbjct: 172 PGGLSYAPPVAELLQC------------------RHVLDGFRGWYERRI-----LGCSLD 208 Query: 239 RLMYIKSFIDKLSDFVEQVY---KVDTAVIAAFYP--EWLTRGKGAVNYLSVPEFPTDSK 293 R + S ++ L ++E+ D + F G G N+LS ++ Sbjct: 209 RWRAVDS-LEALDLWLEESAAHRDSDVGFLLRFGRTIGLDRLGGGHGNFLSCGSLDLPAE 267 Query: 294 N-----GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD-EAPQAPWEG 347 G L P G+ A + + P I E SWY E + P EG Sbjct: 268 TAARGVGGHLVPSGFARGAVVEGFDP----------AAIAEHVAASWYAAYEGGRHPAEG 317 Query: 348 TTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQK 407 T P Y + +YSWVK+ + G E GP A +V AG + L Sbjct: 318 ETEP-YASGEEGRRYSWVKAARYLGTPAETGPFAERIV---AGDPLFTDLLRR------- 366 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG 467 Q + L R + R L + + I G H + P G Sbjct: 367 ---------QGPNALARELARLTRPATLLPAMALWLGEV---IASGGHDIYADPGPIPDG 414 Query: 468 EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 G+G ++A RG L HW+ IKDG I YQ + P+ WN PR+ GP+E++L+GTPV Sbjct: 415 --AGIGMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSGGVRGPWEEALIGTPV 472 Query: 528 ADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 AD + P+EV I SFDPC+ C+VH V G + V++ Sbjct: 473 ADADNPVEVGHVIRSFDPCLVCSVHTVR-KGRSLGRVRL 510 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 244/625 (39%), Gaps = 129/625 (20%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN--------GVVSKAWASGTMWRGMEEIVKNRDPRD 52 MS RI IDPVTRIEGHLR++ E VV +A+ SGT++RG E I++ RDPRD Sbjct: 4 MS-RIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRD 62 Query: 53 AWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 AW+I QRICGVC HA +S++A E+A N+ A IRN++ A+ +DHI+H Y L Sbjct: 63 AWIITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILL 122 Query: 113 ALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW 172 + + + A +S ++Q K ++VA G + Sbjct: 123 GPE-LGVVCKYPPMVPPALGKEGVSKLGIGSSYVGALEIQRKANEIVA------IWGGKF 175 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 H Q+ GG+A D + Sbjct: 176 PH----------------------------------------HQSEYPGGMAVRPTEDRI 195 Query: 233 GVLNLERLMYIKSFIDK--LSDFV------EQVYKVDTAVIAAFYPEWLTRGKGAVNYLS 284 +L R+ I ++ + + DF E+V + ++++ + G N+LS Sbjct: 196 AS-SLARMFEIWRWVAETMVKDFYNLLEANEKVGEAVSSLLDINFRGLQDVGASTGNFLS 254 Query: 285 VPEFPTDSKNGSFL--FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ 342 FP +L ++ L S I I E ++SWY +E+ Sbjct: 255 YGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDGSSKPLDISKIAEYVRYSWYDNESGL 314 Query: 343 APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIV 402 P + P D + YSW+K+P + GK EVGPLA ML + + V Sbjct: 315 NPKD-EDAPKPDK-NKSEAYSWLKAPRYDGKVYEVGPLARMLNTYGT---RWKIPIRNPV 369 Query: 403 AIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPN 462 + S + R+ R + L + + P Sbjct: 370 TGEDHGYFEYEVLNPKGSVIDRLAARVALTILTSQKVFEWLLELKSYTNQKVTNYRNVPK 429 Query: 463 IPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSL 522 E +G G +APRG L H++ +KD I+NYQ VVPSTWN PR+ GP E +L Sbjct: 430 -----EGEGFGLWDAPRGGLLHYIKVKDHKIANYQCVVPSTWNLSPRDDFGQPGPVETAL 484 Query: 523 VGTPVADPNKP---------------------------------------LEVVR----- 538 GT + + + P L + R Sbjct: 485 EGTWLPNLSVPEICNAIYPEKDVDLSALGLGAMSWGDALAAALTPLGLAELNIERLNGQI 544 Query: 539 --------TIHSFDPCMACAVHVVD 555 + SFDPC+ACAVHVV Sbjct: 545 YNTSLTLMVVRSFDPCIACAVHVVR 569 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 138/580 (23%), Positives = 226/580 (38%), Gaps = 112/580 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ I + P R+EG L + E+ +G V++A + M+RG E I+ RDP DA I RI Sbjct: 1 MSRLI-LGPFNRVEGDLEVQLEVTDGRVTEARVNAPMFRGFELILNGRDPMDALSIAPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + ++++ +A A + VP N + N++LA DH+ HFY D+ Sbjct: 60 CGICSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAV 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A W + F + + + + A W Sbjct: 120 YA--------------ARPWFREAERRFAALAGSTSNGGLRSRAALAARARW-------- 157 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++ LGGK PH + GG + I + L R+ Sbjct: 158 ---------------------FELIGTLGGKWPHTGAVLPGGTSRAIET-TERIRLLARV 195 Query: 241 MYIKSFIDK--LSDFVEQVYKVDTAVIAAFYP------------------EWLTRGKGAV 280 +++F+++ +E+V +D+ + + G G Sbjct: 196 REMRAFLEQTLFGTALEEVATLDSLAALQRWRARAAGSDMALFLDLAEATQLTNLGPGPG 255 Query: 281 NYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA 340 YLS + G G +A L P+ I E A+H+WY + Sbjct: 256 RYLSYGAYA--RFEGGHALARGVW-DAALQQGLPL-------DPTQISEDARHAWYAEST 305 Query: 341 ---PQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 P G T P D G YSW K+P + VE G +A LV G+ + Sbjct: 306 SAQALHPMAGLTQPEPD---KPGAYSWNKAPRLGSQVVETGAIARQLVD---GQPLIRAA 359 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 + +A + R++ R + + +++ AL + H Sbjct: 360 V----------------LAHGGTVYTRVLARLLEMARILPLMEQWLLALQPH--APFHAV 401 Query: 458 FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 +P + +G+G EA RG L HW+ I++G I++YQ V P++WN PR+ G Sbjct: 402 QAQPE-----QAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAGTPGA 456 Query: 518 YEQSLVGTPVADP-----NKPLEVVRTIHSFDPCMACAVH 552 E +LVG + + + + V + SFDPCM C VH Sbjct: 457 LEAALVGARLDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 366 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 134/563 (23%), Positives = 217/563 (38%), Gaps = 93/563 (16%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++RIT+ P R+EG L + ++++GVV A + ++RG E+I++ R DA +V RI Sbjct: 1 MTRRITVGPFNRVEGDLEVRLDLDDGVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + ++++V A +A + N N+ AA DH+ HFY D+ Sbjct: 61 CGICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDFARDA 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A + WH F VQ + Sbjct: 121 YAGR--------------PWHPEIAARFKAVQGSAAQAM--------------------- 145 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 L + +++ LL GK PH GG I+L G V L + Sbjct: 146 --------------LPARARLLQIMGLLAGKWPHSLAFQPGGTTCAIDL-GERVQLLSII 190 Query: 241 MYIKSFIDK--LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + F+++ D ++ V +D+ + + RG +L+V + + G Sbjct: 191 GDFRDFLERTMFGDSLDNVLAIDSVAALEAWRDG--RGGDFARFLAVADDLALHRLGRIA 248 Query: 299 FPG---GYIENADLSSY-----RPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 P G D + P+++ + I E +W +D + +P E T Sbjct: 249 LPLMSFGAYHGEDAPLFAAGVLDPLSAARTSFDPAAITEDVARAWMRDTS-LSPLEADTD 307 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P D YSW K+P G EVG LA + G ++ + + Sbjct: 308 PDAD---KPAGYSWCKAPRLAGGPAEVGALARQAID---GDPLIRDCVARFGSC------ 355 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 R++ R L + L D + Sbjct: 356 ----------VTTRVVARLRETARLALAMHQWARQL-------DLAEPFLERGERGRDGT 398 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G+G +EA RG L HW+ ++ I YQ + P++WN PR+ GP EQ+LVGTPV D Sbjct: 399 GIGLVEAARGSLGHWIELRGDSIRRYQIIAPTSWNFSPRDRGGVPGPLEQALVGTPVGDA 458 Query: 531 N-KPLEVVRTIHSFDPCMACAVH 552 + + + + SFDPCM C H Sbjct: 459 GARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 141/558 (25%), Positives = 232/558 (41%), Gaps = 77/558 (13%) Query: 9 PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH 68 P+ R+EG L I IE+G +++A +SGTM+RG E ++ R D +I RICG+C+ +H Sbjct: 13 PLNRVEGDLEIQAAIEDGCITEARSSGTMYRGFENMMTGRGTLDGLVITPRICGICSLSH 72 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPT 128 ++V A E P NA+ +RN+ L I + +D+ + A + P Sbjct: 73 LTAAVEALEDISGTTPPDNARRLRNLALMVEMLQSDIRQSILMFMVDFTN-EGAYASHPL 131 Query: 129 KASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 +S +++ + S + + ++ ++VA G W H + +P V Sbjct: 132 -SSLLMERYAPLSGTSAIQSIQETRRLLEVVA------IIGGQWPHTSFMVPGGVTSSLG 184 Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 + L C + + ++ R + S Sbjct: 185 TP--ELLRCCMIIENFQSWYEK--------------------NVLGCSISRWHQVDS-AQ 221 Query: 249 KLSDFVEQVYKVDTAVIAAF----YPEWL-TRGKGAVNYLSVPEFPT------DSKNGSF 297 + D++E++ + F Y L T G+G +L P + G F Sbjct: 222 AMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQGPDGFLCYGGLPLPEHTEVKGQQGQF 281 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 P G+ + + ++ P D I S KH+ PW+ +T P Sbjct: 282 -IPAGFARHGSIQAFDPANIAED---ISQCPYSQKHT------SVHPWDSSTNPDP-YAP 330 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + YSW+K+P + G VE GPLA MLV+ + + Q Sbjct: 331 RENSYSWIKAPRYNGHAVETGPLAEMLVRR---DPLFTDLIQR----------------Q 371 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S L R + R L + L +N +G VK IP + +G G ++A Sbjct: 372 GSSVLSRQLARLTRPARLIPAMLAWLRELSSN-PQGKFYHRVK-KIP---DGQGAGLIQA 426 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L HW+ I D I +YQ + PSTWN PR+ +++ G +E++L GT + +P P+E Sbjct: 427 VRGGLGHWVQIVDQKIEHYQIITPSTWNGSPRDGDNNPGAWEKALEGTFIKNPENPVEAG 486 Query: 538 RTIHSFDPCMACAVHVVD 555 + SFDPC+ CAVH + Sbjct: 487 HVVRSFDPCLVCAVHSLH 504 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 362 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 140/585 (23%), Positives = 231/585 (39%), Gaps = 63/585 (10%) Query: 21 CEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESAL 80 E+++G V A SGT +RG E+++ RDP DA QR+CG+C+T HA ++ A ES Sbjct: 1 MEMKDGSVVDARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESLA 60 Query: 81 NID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALD-----------WVDITSALQADP 127 +P +A +RNI+ H+ + Y D + D+ +AL + Sbjct: 61 GATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPDLADPIYGDLLRYSDVGTALTGEL 120 Query: 128 TKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIA 187 + ST H +T + I+ + +G+ G H + +P V + Sbjct: 121 AGRFNVPGYASTGHTAPGSAYT---DAIRFVKLTGEAEAILGGRSPHSPVIVPGGVTVRP 177 Query: 188 VAHYLQALE---------CQRDANRVVALLG-GKTPHIQNLAVGGVANPINLDGLGVLNL 237 A L L+ +R ++L + H + N I G L++ Sbjct: 178 SASDLMKLKGCYASIVDFLERRLTYPLSLDEWLENTHSTQANPDFILNRIKSLPTGDLSM 237 Query: 238 ER----LMYIKSFIDKLS--DFVEQVYKVDTAVIAAF----------YPEWLTRGKGAVN 281 E+ + F ++ DF+ V+ + + R + Sbjct: 238 EKGWNDMQLFSVFCSRMMSYDFLSMPIYVELDTLGGYPLYDQLIGFLNYGGFYRVRDRAG 297 Query: 282 YLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP 341 + P D + G+F P G+ + + +D ++ + S+ E Sbjct: 298 NFTDGYSPVDGEEGTFEIPSGFTP-GSMPNLFDSPGKADPAMVAEQVSGSFFSYSGGETA 356 Query: 342 QAPWEGTTIPAY---DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 P G T P+ D KYS+VK+P + E GPLA M+ RE + Sbjct: 357 LKPEAGETSPSPRAADIDYSGHKYSFVKAPRYGNVPCETGPLARMINS----REPYIMNI 412 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 +++ + + + S R++ R C +L L + D + Sbjct: 413 MQMMHFSNPVFSSGKSYNR-TSVYTRVLSRMQECLITAQLLGRWIDDLEVH---SDPRKY 468 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 P P GE G +EAPRG L HWM + +DG I+ YQ + P+TWN+ PR+ GP Sbjct: 469 CVPVTPGRGEA-GACMIEAPRGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAETKFGP 527 Query: 518 YEQSLVGTPV-------ADPNKPLEVVRTIHSFDPCMACAVHVVD 555 E SL+G P+ + I SFDPC++CAVH + Sbjct: 528 IELSLIGAKTTPRGNIPGSEVNPISLYHIIRSFDPCVSCAVHTIR 572 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 356 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 151/578 (26%), Positives = 251/578 (43%), Gaps = 77/578 (13%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++++ I P+ R+EG L + E V KA+ ++RG+E I+K + P D+ +I RI Sbjct: 1 MNEKV-ISPLNRVEGDLDLKVVFEGKKVVKAFPMSRLFRGIEIILKGKFPMDSLVITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C +H LS+ +A E A VP NA +RN++ A + + H Y + +D V++ Sbjct: 60 CGICGGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNLK 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 +++ + + S ++ + ++ A G W H + +P Sbjct: 120 YEKMG---FYRDIVLRWAPYLGQSYKQAVAWSKRYTEIYA------IFGGQWPHGSAMVP 170 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V +++ ++ + + A K + +GG L++ Sbjct: 171 GGVTTDPLSN--DIIKAKSILASITAEFLEK------VILGG-------------PLDQF 209 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WLTRGKGAVNYLSVPE--FPTDSKNGS 296 + +KS D L + + D + I + E W G G+ +S P S Sbjct: 210 LQVKSKRD-LDQWAKDYPNGDISKIWNYGLEMKWDKIGSGSQYLMSYGHVTLPEHYDPAS 268 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTIPA 352 + + E R I +E I E HS+Y D+ P+ G T P Sbjct: 269 HVEKKRFREGLLDLRTREIHQIKEE----NIVEFVSHSFYSYEQGDKVGLHPYNGETTPL 324 Query: 353 YDGWSDDGKYSWVKSPTFY--GKTV--EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 GKY++ K+ + GK V EVG LA M+V AG + + I Sbjct: 325 PP--ESKGKYTFTKAFRYKLGGKYVAPEVGALAMMVV---AGDPLMTDLVYRIGT----- 374 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 S L R I R V + +I++ + + + D T++KP +G Sbjct: 375 -----------SVLAREIARIVRLARIHEIMREELESY-----EYDEITYIKPEEKLSG- 417 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 +G G +EA RG L HW+VI++G I NYQ V P+ N GP + + +L GT V Sbjct: 418 -RGYGLVEASRGSLGHWLVIEEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIALQGTEVE 476 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +PN P+EV + S D CM C VHV+D G E++S+++ Sbjct: 477 NPNNPIEVAHIVRSHDACMVCNVHVLDG-GKEILSMRL 513 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 351 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 152/597 (25%), Positives = 236/597 (39%), Gaps = 71/597 (11%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RITIDPVTR+ LR+ E+ +G ++ A +SG ++RG+E+++ R P DA QRICG+ Sbjct: 2 RITIDPVTRLSSGLRVTAELTDGAITSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICGM 61 Query: 64 CTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 C+ +HA +SV A ESA +P +A +RNI+ +H+ H Y D D Sbjct: 62 CSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPDLADPVY 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + + +L + ++ + G+ G +P Sbjct: 122 GDALNSSSLGNLL-WQELKERYAVSGGQAYGEALRCIREIGRAEGVLGGRSPCSPAIVPG 180 Query: 182 EVNLIAVAHYLQALE---------CQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 V + + ALE Q+ + + G + + G + I + Sbjct: 181 GVTVRPARGDIGALETCLENIDGFLQKRLVGAMTI-GEWLANTHDQDAGFGYDYIEHLPM 239 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAV------NYLSVP 286 G L+ + + F +++ D + A+ L G +LS Sbjct: 240 GDLSASK---GWGDLPLFMMFFSRMFARDVLSLPAYI--GLDDAGGYPLDDQLIGFLSYG 294 Query: 287 EF---------PTDSK----NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKH 333 F D +G+F P G+ + I +D I E Sbjct: 295 SFYRVRDESGRLKDGYGTVEDGAFEMPAGFTPGG----MQNIYLAADRVDPNLIVEHVAA 350 Query: 334 SWY---KDEAPQAPWEGTTIPAYDGWS---DDGKYSWVKSPTFYGKTVEVGPLANMLVKL 387 S+Y ++ +AP +G T+PA S D +YS++K+P + EVGPLA + Sbjct: 351 SFYDYSEERLSEAPLDGETVPAGRASSIELDGARYSFIKAPRYGRVPCEVGPLARQINSR 410 Query: 388 AAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALI 447 + +L ++ + S R + R + +L L Sbjct: 411 ESLIIDAMRRLYS--------RNMSVTNYPMASVYTRTMARMQETLLISRMLHEWLDDLH 462 Query: 448 --TNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTW 504 K VKPN G G +EAPRG L HW+ I KD ISNYQ V P+TW Sbjct: 463 VSDERQKYCVPVSVKPN------RTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTW 516 Query: 505 NSGPRNFNDDVGPYEQSLVGTPV-------ADPNKPLEVVRTIHSFDPCMACAVHVV 554 N+ PR GP E +L+G + P+ + I SFDPC ACAVH V Sbjct: 517 NASPRCSEQKSGPMELALLGCSTTPSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 150/619 (24%), Positives = 240/619 (38%), Gaps = 114/619 (18%) Query: 4 RITIDPVTRIEGHLRIDCEIEN--------GVVSKAWASGTMWRGMEEIVKNRDPRDAWM 55 R+ +DP+TRIEGHL + E + VV KA++ ++RG E I++ RDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 I QRICGVC H ++++A + A ++ A IRNI+ AA+ +DH++H Y L + Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTYLLVGPE 122 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP 175 + + A +S + +Q K ++VA G + H Sbjct: 123 -IGVVCKYPPMVPPALGKEGIRKLGLGSSYVQCVDIQRKANEIVA------LWGGKFPHH 175 Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 + P V + + + L + + Sbjct: 176 MCEYPGGVTVKPTGD-----RIAQTLAKATELW---------------------EWCAHV 209 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 L+ L+ IK + +S+ + ++ ++ A G NYLS FP Sbjct: 210 ALKDLIAIKERNEIVSERLSELLGIEHRAFA-------DIGASWGNYLSYGIFPDPENYD 262 Query: 296 SFLFP----GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-APQAPWEGTTI 350 ++ + ++A + + + I E K+S YKDE + PW+ Sbjct: 263 DWVKAQDGQPSFRKSAVIYAGSWQNGELKPFERDKIVEYVKYSRYKDEISGMKPWDVEMT 322 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 Y+W+K+P + GK EVGPLA M+V L + +TG Sbjct: 323 NDIVWKDKPNAYAWMKAPRYDGKVHEVGPLARMIVTYG---------LRWKFDVTNPITG 373 Query: 411 NTLEVA-----QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP- 464 T+ V S + R+ R V + L + + P+ Sbjct: 374 ETVSVDWEVMNPKGSVIDRVASRVVQALLFATKIMEWAVQLKDYASEYPIVSKDIPDYKY 433 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 E +G G EAPRG L H+ IK+ +I+NY VVPSTWN GPR+ + GP E++L G Sbjct: 434 VPNEGEGWGLWEAPRGALLHYTKIKNKVIANYACVVPSTWNLGPRDDFGNPGPVEKALEG 493 Query: 525 T-----------------------------------PVADPNKPLE-----------VVR 538 P+ LE + Sbjct: 494 CWLPKNLSVPDVCNALWPEEDVLGMKWGDALAKAIAPLGLAELNLEPSNGAKYNTSLALA 553 Query: 539 TIHSFDPCMACAVHVVDAD 557 + SFDPC+AC VH ++ + Sbjct: 554 IVRSFDPCIACGVHTIELN 572 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 144/601 (23%), Positives = 231/601 (38%), Gaps = 85/601 (14%) Query: 8 DPVTRIEGHLRI--DCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 DP+TRI G L I + EN V++ +++ +++RG +K +DPRD+ I RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 HA SV A A + P A +I N+ AA DH + L +D+ + + Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCEQM-VRET 144 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 +P + +P I D++ + +N Sbjct: 145 NPGVWEKAKTA------EAPHAAEHGYRTIADIMTA---------------------LNP 177 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 Y + L R + L+ G+ H L GGV + L + RLM Sbjct: 178 FTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPTIQ-LFTDYITRLMKYVE 236 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEF------------PTDSK 293 F+ K+ + ++ + P + G+ + F T Sbjct: 237 FMKKVVPLHDDLFDFFYEAL----PGYEEVGRRRILLGCWGSFQDPNVCDYNYRTMTKWG 292 Query: 294 NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ----------- 342 G F+ P G + + +L + + + + ++ G S W +E Sbjct: 293 RGMFVTP-GVVVDGELLTTDLVDINLNIRILLG--SSFYQDWDHEETSVKNDPLGNAVDR 349 Query: 343 -APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKT--------VEVGPLANMLVKLAAGRES 393 PW TT+P + G Y+WV SP + K GP+A + AG Sbjct: 350 KHPWNQTTLPRPQKRNFGGNYTWVMSPRWLDKRTGDHLALDTGGGPIARLWATALAGLVD 409 Query: 394 T--QNKLNEIVAIYQKLTGNTLE------VAQLHSTLGRIIGRTVHCCELQDILQNQYSA 445 V IY T E + + + R RT Sbjct: 410 IGYIKSTGHSVKIYLPRTALKPEAEFEWKIPMWSNAIERDRARTYFQAYSAAAALYFAEQ 469 Query: 446 LITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWN 505 + + G TF +P E G GF EA RG+LSH +VI+DG I+NY P+ WN Sbjct: 470 ALAELHAGRTRTFTDFKVP--DEAIGCGFHEAVRGVLSHHLVIRDGKIANYHPYPPTPWN 527 Query: 506 SGPRNFNDDVGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVHVVDADGNE 560 + PR+ GPYE ++ TP+ + N P ++++R + SFDPC+ C VH+ +G Sbjct: 528 ASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMRAVRSFDPCLPCGVHMYVGNGKT 587 Query: 561 V 561 + Sbjct: 588 I 588 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 344 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 144/552 (26%), Positives = 225/552 (40%), Gaps = 73/552 (13%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI P R+EG L I +I V A+ + ++RG E+I++ +DPRDA IV RIC Sbjct: 5 TRRIIAGPFNRVEGDLEIRLDINGSAVRAAYVNSPLFRGFEQILEGKDPRDALTIVPRIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ + ++++ A +A I P N + I II AA DH+ HF+ D+ Sbjct: 65 GICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADFARAIY 124 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A ++ ASE + + + VQ+ + + + G W H P Sbjct: 125 AGESWYGMASEQFRA---------KNGSSVQDAMNARASLLHIMGLLAGKWPHTLSVQPG 175 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 QRD R++A++ ++ + L + +LE L Sbjct: 176 GATKA---------PDQRDRVRLLAII----RQFKDWIEKSIFAAPVERILAIDSLESLR 222 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + + + DT + + G G ++S +P D G L P Sbjct: 223 AYHAEAPQHGSLRLFLTICDTLELGS-------MGLGPKRFMSYGAYPMD---GRHLLPP 272 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G N + I E +W E P+EG T+P + Sbjct: 273 GIWLNGKIMPV----------DTGLIAEDLTSAWMNGETA-HPFEGRTLPDETMAN---G 318 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW K+P G+TVEVG A ML+ A Q L + A + Sbjct: 319 YSWCKAPRMAGQTVEVGAFARMLI---ADHPLAQGLLQDGAANVR--------------- 360 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 R++GR ++ + ++ V IP + + +G EA RG Sbjct: 361 -ARVVGRLFEIASTVLAMEQWAADIV-----PGEPAMVHGRIPQSAKVEG--LTEAARGS 412 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD-PNKPLEVVRTI 540 L HW+V++ G I++YQ + P+TWN PR+ GP EQ+L G PV P+ V + Sbjct: 413 LGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGPVEQALRGAPVRHGEETPVSVQHIV 472 Query: 541 HSFDPCMACAVH 552 SFDPCM C VH Sbjct: 473 RSFDPCMVCTVH 484 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 158/629 (25%), Positives = 248/629 (39%), Gaps = 97/629 (15%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE--NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 + I IDP+TRIEGHL + E++ + + W TM+RG E ++ R P DA I R Sbjct: 33 TAEIFIDPITRIEGHLGLKAEVDVTSRKTTNTWVFATMFRGFEVFMRGRPPEDAIAISSR 92 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI-ILAAHTTHDHIVHFYQLSALDWVD 118 +CGVC +HA ++ A + AL +RN+ + +DH + L D+ + Sbjct: 93 VCGVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSE 152 Query: 119 I------TSALQADPTKASEM--LKGVSTWHLNSPEEFTKVQNKIKDLVA-----SGQLG 165 + S +A T +E + G T + ++ + +I L + + G Sbjct: 153 VAVSKLTPSCWEAAKTTPAEYSAVHGYRT-IADIMKDMNPITGRIWQLTVKYQRIAREAG 211 Query: 166 IFANGYWGHPAMKLPPEVNL-IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA 224 + G HPA +P ++ ++ A YL R ++ A +LA Sbjct: 212 VLIYGRHSHPATLIPGGISTDLSTAQYLFEGYAFR-LTQLTAWTKFVVAVWMDLADFYNK 270 Query: 225 NPINLDGLGVLNLERLMYIKSFID------KLSDFVEQVY-KVDTAVIAAFYPEWLTRGK 277 N N + G + ++Y D +L D + +Y K+D P L G Sbjct: 271 N-CNYEDEGYTYSKPILYSSGVFDDPEAYSQLGDDYKTIYEKIDEVAKKRAAPPGLYIGG 329 Query: 278 G--AVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW 335 N + + SF Y E D ++ T + L+ G + W Sbjct: 330 ELVTENITEHQRNVVELVDSSF-----YEEWKDKTTLFTKTDPAGNPLVGGDETLV---W 381 Query: 336 YKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK----TVEVGPLANMLV------ 385 Y PW TTIP S GKYSW + Y K EVGP+A M V Sbjct: 382 Y------HPWNKTTIPRPTDSSWSGKYSWAATVRLYWKGKLYPFEVGPIAKMYVMAHSNL 435 Query: 386 ----------------KLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 K+ +++N + ++++T T +T+ R+ R Sbjct: 436 KGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEEVT-FTYYAPPKSTTIERVRARA 494 Query: 430 VH-CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 ++ D L KG PA G G LE PRG + HW+V+ Sbjct: 495 FDMAVDVADAWAFVLRGLYYINSKGMTQASRPWKEPAFS--LGFGQLEVPRGNVEHWIVV 552 Query: 489 KDGIISNYQAVVPSTWNSGPRNFNDD-------------------VGPYEQSLVGTPVAD 529 K+G I+NYQ P+T N GPR + + P+E + + T V++ Sbjct: 553 KNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTKSPEGYCLSPFEAAALHTVVSE 612 Query: 530 PNKP-----LEVVRTIHSFDPCMACAVHV 553 +P L+ VR I SFDPC+ACA H+ Sbjct: 613 EVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 160/674 (23%), Positives = 260/674 (38%), Gaps = 148/674 (21%) Query: 1 MSQ-----RITIDPVTRIEGHLRIDCEIENGVVS---KAWASGTMWRGMEEIVKNRDPRD 52 M++ RI IDP+TRIEGHL + ++ +AW TM+RG E R P D Sbjct: 1 MTRTSRTIRIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPED 60 Query: 53 AWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI-ILAAHTTHDHIVHFYQL 111 + RICGVC +HA +SV A + A + +RN+ +DH + L Sbjct: 61 LPHVTSRICGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGML 120 Query: 112 SALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGY 171 D+ + + + K V H + FT + + ++ Sbjct: 121 EGPDYS--AAIVSKFTPSVYDHAKKVYAEHRDI-HGFTTIADIME--------------- 162 Query: 172 WGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG 231 +N + + A+ QR A L+ G+ H L GG++ I+ Sbjct: 163 ----------ALNPLTGKVWQYAVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDISDAE 212 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE-----WLTRGKGAVNYLSVP 286 L+ + + KL+ +V+ Y + +++ F E L ++Y + Sbjct: 213 NL------LLAYTTRLIKLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSY-AYT 265 Query: 287 EFPTD-----------SKNGSFLFPGGYIENADLSSYRPITSHS--DEYLIKG------- 326 P++ + +G F P Y E D+ Y P+ + D+ IK Sbjct: 266 SEPSECPGMKTTVLAVTSSGIFDDPEAYGE--DMPQYDPVEFYKAIDKAAIKRLLKPGIV 323 Query: 327 ----------------IQESAKHSWYKD----------------------EAPQAPWEGT 348 I E + ++Y+D +A PW Sbjct: 324 IRGELVSTSLKEYQRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLHGKYDAKYHPWNKV 383 Query: 349 TIPAYDGW--SDDGKYSWVKSPTFYGK-----TVEVGPLANMLVK-------LAAGREST 394 TIP +G + GKY+W K EVGP A +L+ G ++ Sbjct: 384 TIPKLEGKAINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAW 443 Query: 395 QNK------LNEIVAIYQKLTGNTLE-------VAQLHSTLGRIIGRTVHCCELQDILQN 441 ++ A +L G+ E V + +T+ R+ R + L D++ Sbjct: 444 FKAGGREITVHLPRACTDELPGSVCEPMEFKWKVPPISTTIYRLWARAFNL--LLDVVGA 501 Query: 442 Q--YSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAV 499 S + + K T +P T F G GF EAPRG + HW+V ++G + N Q Sbjct: 502 WKGVSQYRSLLDKRYTETSRPWKVPRTITF-GFGFTEAPRGTVRHWVVQENGKVLNVQIH 560 Query: 500 VPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVHV- 553 P+T N P + P+EQS + + V + P L+ VR+I SFDPC+ACAVH+ Sbjct: 561 APTTGNVSPHDRFGY-SPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACAVHLA 619 Query: 554 VDADGNEVVSVKVL 567 DG V +V+ + Sbjct: 620 FRKDGKTVKTVEKM 633 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 327 bits (837), Expect = 8e-88, Method: Composition-based stats. Identities = 214/229 (93%), Positives = 223/229 (97%) Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANML KLAAGRESTQ KL Sbjct: 1 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRESTQTKL 60 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 NEI+A+YQKLTG TLE+AQLHSTLGRIIGRTVHCCELQ++LQ+QY+ALI NIGKGD+TTF Sbjct: 61 NEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDYTTF 120 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 VKPNI ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY Sbjct: 121 VKPNIQATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 180 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 EQSLVGTP+ADP KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 181 EQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 229 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 122/567 (21%), Positives = 210/567 (37%), Gaps = 130/567 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG +++ EN + A+ +RG E I++NR P DA +I RICG+ Sbjct: 3 KIERKVLHRVEGEIQLKLIWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICGI 62 Query: 64 CTTTHALSSVRAAESALN-----IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C +H +++V+A E ID+ A IRN+ +HI FY D++ Sbjct: 63 CGHSHLIATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLK 122 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + K KD++ Sbjct: 123 L---------------------------------EKDKDILE------------------ 131 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGV-ANPINLDGLGVLNL 237 + + + +AL + +++++L G+ PH GGV ++PIN Sbjct: 132 ---DFTPLKGDKWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINT-------- 180 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 D VE + D+ + F+ E + G YLSV F + Sbjct: 181 --------------DIVEAISITDSVI--RFFEEEI-IGTDINTYLSVESFDQFMDKINK 223 Query: 298 LFPGGYIENADLSSYRPITSHSDEYL-----IKGIQESAKHSWYKDEAPQAPWEGTTIPA 352 +IE + D ++ + ++E K K P + + Sbjct: 224 GDLRRFIELTFKNGMEKTGRAYDRFITVDAILPCVREGVKK---KRSCKFDPSRIKEVDS 280 Query: 353 YDGWSDDG------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQ 406 + + DG +YSW K+ + G +E GPLA V + + ++ + Sbjct: 281 HSFLTKDGTDFSRKRYSWAKAVRYDGLPMETGPLARKAVSKNSLFQDLISRFGD------ 334 Query: 407 KLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT 466 S L RI R + L++ ++ T +++KP + Sbjct: 335 -------------SYLVRIWARIDEIGRMALTLKSYLLSINTK-----EPSYIKPPVKIE 376 Query: 467 G-EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 E +G G +EA RG L H + ++ G I Y + P+TWN GPR P E++++G Sbjct: 377 NLEGEGTGLIEAARGSLLHRLELEKGKIKKYTIITPTTWNLGPRC-ERYHSPAEKAIIGL 435 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVH 552 + L+ + SFD C C H Sbjct: 436 ESS-----LKAEMILRSFDVCSVCTTH 457 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 111/551 (20%), Positives = 196/551 (35%), Gaps = 116/551 (21%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RI + R+EG +++ ENG + A RG+E +++ R DA +I R+CG+ Sbjct: 2 RIEKRLLARVEGTAQLELVWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCGI 61 Query: 64 CTTTHALSSVRAAESALN-IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 C H ++ V+A E A+ + + A+ +R+I L +HI FY D++ + Sbjct: 62 CGHAHLMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFIRLGEK 121 Query: 123 L-QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L + +P + + +S ++ G W H + +P Sbjct: 122 LDEFEPFRGKRWKEAISVASEAI------------------KVIAIFGGQWPHSSYAVPG 163 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + D ++ +AL+ VG + L+L + Sbjct: 164 GITSNFT---------STDVSKALALVSRVEGFFLESLVG-------MPVEAFLSLRKHG 207 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + + F++ +K + Y LT G+ FP + PG Sbjct: 208 SWEGLKGDVKLFIDLCFKYGLERVGMSYGRLLTGGE---------VFPC-------ITPG 251 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + L S I I+E +D Sbjct: 252 HFTGEKKLCSL----------NISKIRE---------------------------ADGSP 274 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS K + G E GPLA + + + S Sbjct: 275 YSGAKRVRYNGMPYETGPLARQFLSGNPFVKRLHKMYGD-------------------SY 315 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R++ R + EL ++ + ++L + I + + + P +GVG +EA RG Sbjct: 316 MVRVLSRLLEVWELTSTVKEKLTSLYSFIKEP--SCQIPFQKPERITGEGVGIVEAARGT 373 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H + I+ G+I+ Y + PS WN GPR +G E++++G P+ + Sbjct: 374 LIHRVSIEKGVITRYHIITPSVWNLGPRC-EKYLGVAEKAMIGL-----ENPIHAEMVLR 427 Query: 542 SFDPCMACAVH 552 SFD C C H Sbjct: 428 SFDVCSVCTTH 438 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 309 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 114/560 (20%), Positives = 191/560 (34%), Gaps = 124/560 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG + + ++G V A+ +RG E ++K + DA +IV R+CG+ Sbjct: 2 KIERKVLNRVEGEIELKLLWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCGI 61 Query: 64 CTTTHALSSVRAAESALN-----IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H ++ V+A E A + + + A IR + L +H+ FY D V Sbjct: 62 CGHAHLMACVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVK 121 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + ++ + + E + N ++A G W H + Sbjct: 122 LEPSI----------AELYEPLRGRAWVEALRASNMPIKVIA------LFGGQWPHTSY- 164 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 GGV Sbjct: 165 ---------------------------------------AVPGGVVCDPTGYE------- 178 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV-PEFPTDSKNGSF 297 L + F+++L F E WL G YLS+ G Sbjct: 179 -LSQAELFLERLKTFFES---------------WL-LGMPLEEYLSLKGRNYLKDIRGDL 221 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW- 356 G + E A + D ++ G + S + +P++ + D + Sbjct: 222 ---GRFTEVAIEHNLHEEGRSYDRFITGGELKPLFRSGFFTREGVSPFDADKVSENDEFT 278 Query: 357 ---SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 + Y+W K+ + G E GPLA LV G + + Sbjct: 279 FFRRNGSAYTWSKAARYSGLPCETGPLARQLVS---GNRVIGSLFRRFGS---------- 325 Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGV 472 S L R++ R L Q + K D ++ +P++ +GV Sbjct: 326 ------SVLVRVVARMDEAVRLFTEAQRTLHRI-----KLDEPSWNRPSVDEKVFSGRGV 374 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G +EA RG L H + I+ G I +Y + P+ WN GPR+ +G E++L+G D Sbjct: 375 GVVEAARGTLIHELEIEGGRIRSYNIITPTVWNLGPRDAEH-LGVAERALLGL---DSEL 430 Query: 533 PLEVVRTIHSFDPCMACAVH 552 E+ + SFD C C H Sbjct: 431 KAEI--VVRSFDVCSVCTTH 448 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 120/545 (22%), Positives = 196/545 (35%), Gaps = 117/545 (21%) Query: 18 RIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 + ++ G V++A + ++RG E I++ R P DA IV RICG+C+ ++++ +A Sbjct: 1 EVTLTLDAAGFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQAL 60 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKG 136 I N + +LA DH+ HF+ D+ SA + P Sbjct: 61 ADWARIKPVPNGALVAQTVLAVENLADHLTHFFLFFMPDFTH--SAYRTMP--------- 109 Query: 137 VSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALE 196 W + F + + S + A W H Sbjct: 110 ---WFDAAVRRFAPYRGE------SAARWLAARAQWFH---------------------- 138 Query: 197 CQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDK--LSDFV 254 +V LL G+ PH + G I+ L L + ++ ++ + D + Sbjct: 139 -------LVGLLAGRWPHTLAVQPSGTTRTIHAMEQREL-LRMVGQMRRYLTESLFGDTL 190 Query: 255 EQVYKVDTAVIAAFYPEW-----------------LTRGKGAVNYLSVPEFPTDSKNGSF 297 + V +D+A + E T G+ +LS + Sbjct: 191 DAVLALDSADALLAWAEGRESDAAFFIQVAHALELFTVGRAYDRFLSYGAY--------R 242 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 +P G E A +S I E SW A P EG T+P + Sbjct: 243 AWPAGVWERATAASV--------PLDEAAIVEEVAASWLGGAAS-HPAEGETVPWLE--- 290 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 YSW K+P ++G E G LA +V AG ++ + Sbjct: 291 RPDAYSWCKAPRYHGAPAETGALARAVV---AGVPLARDLVQRWGG-------------- 333 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S R+I R C + ++ + + F++P + E +GVG +EA Sbjct: 334 --SLFSRVIARLWECARIVQWVEAWLTEIDVK------APFIEPVV-WPNEGRGVGLVEA 384 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L HW+ + +G I YQ + P+TWN PR+ GP E++L G P V Sbjct: 385 ARGALGHWLEVANGRIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEGLTTGAGAMPF-VH 443 Query: 538 RTIHS 542 + S Sbjct: 444 HVVRS 448 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 134/562 (23%), Positives = 207/562 (36%), Gaps = 119/562 (21%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS++ IDPVTR+EGH +I +++ G V A T +RG EE V+ R + I R Sbjct: 1 MSKKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L++ +AA+ ++ DVP +A +R ++ H + F+ LS+ D V Sbjct: 61 ICGICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A AD + + ++ + DL + GQ Sbjct: 121 YDADPADRNIEGVLAEN------------PQLAERGIDLRSFGQ---------------- 152 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 V+A LG K H GGV+N ++ + L E Sbjct: 153 -----------------------NVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEES 189 Query: 240 ---LMYIKSFIDKLSDFVEQVYK--VDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN 294 Y++ ID L D E++ +D A Y +T G +Y + ++ Sbjct: 190 QPLAGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHY--DGDIRLVDES 247 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAY- 353 G L E D +YR I I E +K W P Y Sbjct: 248 GDQL------EEIDDGAYRDI-----------IAERSKE-----------WSYLKFPYYK 279 Query: 354 DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 D +DG+Y VGPLA + A T E V G Sbjct: 280 DRGFEDGQY-------------RVGPLARLN---AVDDVRTPQAHEEWVEFMDAAEGAVH 323 Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVG 473 E + + R + + +Q ++ G KP GVG Sbjct: 324 ERSTYY-----HWARLIEMLYCVERIQELLED--DDVYDGITNIPTKPK-----AGTGVG 371 Query: 474 FLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +EAPRG L H I D G + N +V +T N+G N V ++ + P Sbjct: 372 VIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMNKG--VTSAAETFIDGPEIPEGI 429 Query: 533 PLEVVRTIHSFDPCMACAVHVV 554 ++ I +DPC++C+ H + Sbjct: 430 LNKMESVIRCYDPCLSCSTHAI 451 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 284 bits (725), Expect = 9e-75, Method: Composition-based stats. Identities = 112/578 (19%), Positives = 201/578 (34%), Gaps = 116/578 (20%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I IDPVTRIEGH +I +++ G V A T +RG E+ R + I RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C +H L+S + + L++ +P A +R ++ H + F+ LSA D + Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMD 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + A + GV + +I +L+ ++ HPA Sbjct: 122 SEPAKRNVFGLI--GVDPELARGGIRLRQFGQEIIELLGGKKI---------HPA----- 165 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 GGV++P+ + Sbjct: 166 -----------------------------------WAVPGGVSDPLTTENRS-------- 182 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV--PEFPTDSKNGSFLF 299 +I++ I + V + ++ + E T G ++ + P+ ++ +G F Sbjct: 183 HIQNRIPEAKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMGLVTPQGLWETYDGHLRF 242 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQE--SAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 ++ + + + E++ + +QE K +Y+ G+ Sbjct: 243 ---VDSGGNIVADKLEADNYHEFIGEAVQEDSYLKSPYYR---------------PLGYP 284 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 D + VGPLA + + G +L E G+ + Sbjct: 285 DSKDHC-----RLDSGMYRVGPLARLNICSQIGTPLADQELREFRTY-----GSGTVKSS 334 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 R+I + E +IL + L T + + VG EA Sbjct: 335 FFYHYARLI-EILASVEHIEILLDDPDILSTRLRAAAGI----------NRLEAVGVSEA 383 Query: 478 PRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG L H I ++G+I ++ + N+ N V + + V Sbjct: 384 PRGTLFHHYRIDENGLIQKVNLIIATGQNN--LAMNRTVAQIARHFIQGSQIQEGMLNRV 441 Query: 537 VRTIHSFDPCMACAVH----------VVDADGNEVVSV 564 I +FDPC++C+ H +VD DGN V + Sbjct: 442 EAGIRAFDPCLSCSTHAFGKMPLVIELVDKDGNLVNQI 479 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 280 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 116/554 (20%), Positives = 188/554 (33%), Gaps = 114/554 (20%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 T++ V RIEG +++C +NG++ + +RG E I++++ P DA + RICG+C Sbjct: 3 TVNLVERIEGEAKLNCSWKNGIIIDSRIDFLNFRGFEYILEDKSPLDALVYTPRICGICG 62 Query: 66 TTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 H ++V E A +++ A+ +R I L HI FY D + + Sbjct: 63 QAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIKLN 122 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S L E KV ++ +A G W H + +P Sbjct: 123 S----------NDLNIYEPLKGKKWLEACKVASETIKALA------IIAGQWPHSSYMIP 166 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V L + Q + + N + L +++ Sbjct: 167 GGVMSDPTKMDL--INMQNYLQIAINFFE-----------DSIVNTSLDNYLSFTSVDNF 213 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 I + D AF E GK ++S+ E K F Sbjct: 214 EKIGGDLKLFKDL-------------AFKYELQNYGKSYNRFISLSETNLFKKG---RFS 257 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 I DLS I +SD + KH Sbjct: 258 SKVINKIDLSK---ILENSDSTFTLSGDNTQKH--------------------------- 287 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 +W K+ T+ E GPLA ++ + ++ S Sbjct: 288 --TWSKNVTYDDAFFETGPLARAIISNRKFIKDIHKNFDD-------------------S 326 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP--ATGEFKGVGFLEAP 478 R++ R L + +N S + T +F+KP I + + V +EA Sbjct: 327 AFTRVLARLDELAFLLEDTKNLISKVNTK-----EASFIKPKISLNKIDKVEAVSAVEAT 381 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L H + I+ G I Y + P+ WN GP N + G +++++GT D K Sbjct: 382 RGSLYHKIDIEKGKIKLYDVITPTVWNLGPSNKKEQ-GIAQKAIIGTSSIDIAKI----- 435 Query: 539 TIHSFDPCMACAVH 552 + SFD C C H Sbjct: 436 ILRSFDVCSVCTTH 449 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 110/552 (19%), Positives = 194/552 (35%), Gaps = 142/552 (25%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I +TR+EG ++ E GV+ A S RG+E++++ R DA +I RICG+ Sbjct: 2 KIEKLVLTRVEGEASLNLVWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICGI 61 Query: 64 CTTTHALSSVRAAESALNI-DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 C H +++VRA E+A+ I ++P A+ R + +H+ FY D++ + Sbjct: 62 CGHAHLIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKES 121 Query: 123 L-QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L Q +P K + V + ++I ++A G W H + +P Sbjct: 122 LSQFEPFKGERWKRAV------------QFSSQIVKIIA------LFGGQWPHSSYAVP- 162 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 GG+ + + ++ Sbjct: 163 ---------------------------------------GGITSN--------FSEREVL 175 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEW--LTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + + + F E+ D + E+ L+ GK +LS Sbjct: 176 KALNLVKEGKTFFEKNVSEDLELFLNLCEEFNLLSIGKAYNRFLS--------------- 220 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 GG + SY+ ++ ++ +QE + Sbjct: 221 -GGGLAYCFNPSYKKGKGKVCKFNVRYVQEL---------------------------EA 252 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS + G E GPLA L+ + A+ Sbjct: 253 ADYSKANPVRYKGLPYETGPLARELISKNPLVLKLYKNYGDSYAV--------------- 297 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 R+ R +L +IL+ L+ ++ + + +G G +EA R Sbjct: 298 ----RVAARLAEIKDLLEILEKLLKELMNHLEEPS----CLWEDRSDESGEGFGVVEAAR 349 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L H +VI+ G I +Y+ + PS WN GPR +G E+++VG + L+ Sbjct: 350 GTLIHRVVIEKGKIKDYKVITPSQWNLGPRC-KKYLGVAEKAIVGL-----DSELKAQMV 403 Query: 540 IHSFDPCMACAV 551 + SFD C C Sbjct: 404 LRSFDLCSVCTT 415 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 262 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 112/560 (20%), Positives = 191/560 (34%), Gaps = 115/560 (20%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T++PVTRIEGH +I +++ G V +RG E+ ++ R +A IV RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNID---VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 +C H L++ +A ++ + V A +R I+ H H +HFY L+A D++ Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFI-- 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + V IKD Sbjct: 121 ----------------------AGKDRKTRNVFQIIKDA--------------------- 137 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P++ L A+ ALE R GG+ H + GG++ ++ + Sbjct: 138 -PDIALQAIELRKNALELVR-------ATGGRPIHPTSSTPGGISTELDDETQ------- 182 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 K + K VE + + E + N + K+G + Sbjct: 183 ----KDLLKKAQRNVELAEATLELAVP-IFEENIDLVNSLGNIETYHTGLV--KDGVWDV 235 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAK-HSWYKDEAPQAPWEGTTIPAYDGWSD 358 G + D +Y I E K +SW Sbjct: 236 YDGIVRIKDKEGNMFREFKPADYA-DTIAEHVKPYSWL---------------------- 272 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 K+ ++K + V PL+ + V A K E +++ G + Sbjct: 273 --KFPYIKDLGYPDGVYRVSPLSRLNV--ADKMPDAAPKAQEHFKEFRENFGYAQQ---- 324 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 TL R + + + GD + P+ GVG +EAP Sbjct: 325 --TLLYHWARLIELLACAECAADALE--------GDLSGEKFPDSLERQAGDGVGIVEAP 374 Query: 479 RGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H+ ++G+I+ VV + N+ P + + D + Sbjct: 375 RGTLTHHYTCDENGLITKANIVVATIQNN-PAMEMGIQKVAQDYIKPGVEVDDKIFNLME 433 Query: 538 RTIHSFDPCMACAVHVVDAD 557 I ++DPC++CA H +D+ Sbjct: 434 MVIRAYDPCLSCATHTIDSQ 453 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 261 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 107/560 (19%), Positives = 186/560 (33%), Gaps = 107/560 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M QRI IDPVTRIEGH +I +++ G V+ A T +RG E+ + R + I R Sbjct: 1 MPQRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L+S +A + L + +P A+ +R ++ H + F+ LS+ D + Sbjct: 61 ICGICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLL-- 118 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 ++DP + + + + + + +++ ++ G HPA + Sbjct: 119 -LGWESDPAQRNVF------GLMAAEPDLARSGIRLRQF--GQEVIQHLGGQKIHPAWAV 169 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P V + + R AL Sbjct: 170 PGGVRSALTDQGREQIRAGLLEVRSTAL-------------------------------- 197 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV--PEFPTDSKNGSF 297 S + + D +E E G ++ + P+ + G Sbjct: 198 -----STLKRFKDLLED-----------HASEARIFGNFPSLFMGLINPKGLWEHYQGCL 241 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 F N P I E+ + Y P Sbjct: 242 RFVDSVG-NIIADHLDP------SQFQSFIGEAVQTDSYLKSPYYRPLGYPDQTPGLCRL 294 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + G Y VGPLA + V G +L E + GN + Sbjct: 295 ESGMY-------------RVGPLARLNVCDRMGTPLADQELQEF-----RQRGNGTVTSS 336 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG---EFKGVGF 474 + R + + ++ Q +P + A + +GVG Sbjct: 337 FYY----HYARLIEILACIERIEQQIE----------DPGLCQPPLRAQADVNQLEGVGV 382 Query: 475 LEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 EAPRG L H + G++ + ++ + N+ N V + + P + Sbjct: 383 SEAPRGTLFHHYQVDATGLLQSVNLIIATGQNN--LAMNRTVAQIARHYLHGPDIPESML 440 Query: 534 LEVVRTIHSFDPCMACAVHV 553 V I +FDPC++C+ H Sbjct: 441 NRVEAGIRAFDPCLSCSTHA 460 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 120/572 (20%), Positives = 204/572 (35%), Gaps = 114/572 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+ +++I+PVTR+EGH ++ ++ G + K RG E+ ++ R DA + R Sbjct: 1 MT-KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L+S +A ++ + +P A +RN+I A H H +HF L++ D Sbjct: 60 ICGICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDL--- 116 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 PT + + + + + IKD +A ++G Sbjct: 117 -----MFPTTDDALKRNLLGVAGENM-------DMIKDSIAMRKVG-------------- 150 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN---LDGLGVLN 236 +V +GG+ H VGG + P+ D L L+ Sbjct: 151 ----------------------QTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELLTLS 188 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 + + ++ + VE + + D + Y E G NG+ Sbjct: 189 DNLVETAERTLNVGKEMVENLKEKDLMNLG--YFESYHMG--------------LVNNGA 232 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G I + EY I E + P+ A Sbjct: 233 QDIYEGNIRVVNSEGKIEYEFDPAEYA-NYITEGVR-----------PYSYLKFLALLKR 280 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 +GK V L+ + V Q E V Y K Sbjct: 281 RGEGK-----------GAYRVNTLSRLNVCDKMPTPIAQKYYEEFVKTYGK--------- 320 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 H + R + ++++ I D V P +GVG +E Sbjct: 321 PAHQPMLFHYARLIELLSSSELIRKFLED--DKIVDTDVRAEVDPK---NITGEGVGCVE 375 Query: 477 APRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTP-VADPNKPL 534 APRG L H D GII++ VV + N+ + V + + TP VA P+ Sbjct: 376 APRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDIG--VQKVAEKYIKTPEVAKPHILN 433 Query: 535 EVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + I ++DPC++CA H + + +++S+ V Sbjct: 434 HMEMVIRAYDPCLSCATHTI-GEEPKILSIHV 464 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 255 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 109/568 (19%), Positives = 184/568 (32%), Gaps = 97/568 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+++I+IDP+TR+EGH +ID + ++G V ++ RG E+ + R + I + Sbjct: 1 MAKKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPK 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICGVC H ++S +AA++ + P A+ IR + AH H HI+HF+ L+A D++ Sbjct: 61 ICGVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A +L V + + + + + G+ HP L Sbjct: 121 PEAGPGK----RNILGLVDELGKGAVRRVLQNRGYAQKIQG------LIAGHPIHPVASL 170 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P A + +A G + + E Sbjct: 171 PGG----------MAGPVSEKTRQEIA--------------GMASEIREFAQFALWFFEN 206 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + + +L + L +G VN+ Sbjct: 207 HILAQDRNRELLT--------GELFTHRTHYMGLVDSQGRVNFY---------------- 242 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 + L P ++ E PW P Sbjct: 243 ------DGQLRVVTPEGETMAQFDGSDYLEHL-------AETVLPWSYMKFPYLRDKGWH 289 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G V LA + V Q + A Y +H Sbjct: 290 GLIDGA-----DSGVYRVNSLARLNVADGMATPLAQEAYETMRAFYGG--------TPIH 336 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 +TL R V L AL+ + T ++P +GVG +EAPR Sbjct: 337 NTLAFHWARLVE-------LMQAAEALVDLSQDPEVTDTNVRSLPEGRPGEGVGVVEAPR 389 Query: 480 GMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H +G++ +V + N+ + V Q L+ D + Sbjct: 390 GSLIHHYTTDANGLVKTVNLIVATVQNNAGMGMS--VKKAAQGLIQDGAPDEAVLDMIEM 447 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++DPC+ACA H + G + V++ Sbjct: 448 GYRAYDPCLACATHAL--PGESDLEVRL 473 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 119/578 (20%), Positives = 190/578 (32%), Gaps = 113/578 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS+++ IDPVTRIEGH ++ +++ V A +RG E+ V+ +A M +QR Sbjct: 1 MSRKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQR 60 Query: 60 ICGVCTTTHALSSVRAAESAL------NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 ICG+C +H L +A + + I V A+ +R + A H ++ L Sbjct: 61 ICGICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIV 120 Query: 114 LDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + + A A L E + ++ L GQ Sbjct: 121 PEMLFGMDAPPAQRN------------VLGLIEANPDLVKRVVMLRKWGQ---------- 158 Query: 174 HPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINL--DG 231 + A+ G K H N GGV N +++ Sbjct: 159 ----------------------------EVIKAVFGKKM-HGINSVPGGVNNNLSIAERD 189 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 + E L+ + ID D + Y D + L + D Sbjct: 190 RFLNGEEGLLSVDQVIDYAQDGLRLFY--DFHQKHRAQVDSFADVPALSMCLVGDDDNVD 247 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 +G I + D R H E + Sbjct: 248 YYHGRLR-----IIDDDKHIVREFDYHDYLDHFSEAVEEWSY------------------ 284 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 K+ ++K +V VGPL M V + Q L A + T N Sbjct: 285 --------MKFPYLKELGREQGSVRVGPLGRMNVTKSLPTPLAQEALERFHAYTKGRTNN 336 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 TL R + ++++ L + D P TGE G Sbjct: 337 M--------TLHTNWARAIEILHAAEVVKEL---LHDPDLQKDQLVLTPPPNAWTGE--G 383 Query: 472 VGFLEAPRGM-LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 VG +EAPRG L H+ + G I+ VV +T N+ + N V + +G Sbjct: 384 VGVVEAPRGTLLHHYRADERGNITFANLVVATTQNN--QVMNRTVRSVAEDYLGGHGEIT 441 Query: 531 NKPLEVVRT-IHSFDPCMACAVHVVDADGNEVVSVKVL 567 + + I ++DPC++CA H + G + V V Sbjct: 442 EGMMNAIEVGIRAYDPCLSCATHAL---GQMPLVVSVF 476 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 189/555 (34%), Gaps = 129/555 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + + + +IEG +D NG + + +RG+EEI+ +DPRDA +I R+ Sbjct: 1 MKRTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGFYRGIEEILVGKDPRDALVITPRV 60 Query: 61 CGVCTTTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 CG+C H +++VRA E+ + + A+ IR L+ +HI Y Sbjct: 61 CGICNHAHLIAAVRALENGYASAGWEVVLSPKAKAIREFTLSCELLQNHIKWMYMTIFP- 119 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP 175 + + E V+ + L IFA G W H Sbjct: 120 --------------------NLERYLKIESSENYAVKASYFSTTITKALAIFA-GQWPHS 158 Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 + +P V Q D + +LL + + G L + Sbjct: 159 SYAVPGGVT---------CDPTQLDIIQAQSLLEECVRFFEQMLTGCTLEA----YLSIE 205 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 ++ L +I+ DF + ++ + + +G+ ++ + P Sbjct: 206 SVSSLHHIEG------DFGKLLHLLGSN-------GMAKKGQSYDRFIVFADSPLSPAGK 252 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG 355 S I + + K + ES Sbjct: 253 S------------------IATSVSKVDTKYVVES------------------------- 269 Query: 356 WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + K S K+ ++ + EVGPLA +V ++ + + Sbjct: 270 ---EQKGSMAKAVSYKNRMYEVGPLARGMVSKEPIVKNLHKRYKD--------------- 311 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 S + R+ R +L + + ++ + D + + EF+G G + Sbjct: 312 ----SMMTRVFARIHEVAQLLEKNREMLKSI-----RVDEPSCTLSDTLKLYEFEGTGTV 362 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 EA RG L H + +G I+NY+ + P+ WN + + G +++VG+ + E Sbjct: 363 EAARGSLIHRTTVSNGKIANYEIITPTQWNLSHGDEKEK-GIAVKAMVGSQSME-----E 416 Query: 536 VVRTIHSFDPCMACA 550 +FD C C Sbjct: 417 ADFIFRTFDVCSVCT 431 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 112/565 (19%), Positives = 197/565 (34%), Gaps = 136/565 (24%) Query: 1 MSQRITID--PVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIV 57 MSQ I+I+ +TR+EGH I E+++G + R E ++ R +A I Sbjct: 1 MSQNISINVNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHIT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RICG+C+ H L+S++AAE AL I +R ++L HI+H Y L A D V Sbjct: 61 CRICGICSCGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLV 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 + S F HP + Sbjct: 121 GVPS---------------------------------------------FVPLIKSHPDV 135 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 ++AL +R N + +L G+ H + +GG + L ++ Sbjct: 136 V-------------IRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHK 182 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + L K D V + + L PEF D++ Sbjct: 183 KLLALQK----------------DIEVTIELFKD-----------LKFPEFERDTE---- 211 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 Y + + DEY + Y D +G + Y+ + Sbjct: 212 --------------YIALVNDEDEYPLL----------YGDIGST---DGYRVSKYEYKN 244 Query: 358 DDGK----YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 + Y+ K ++ ++ VG LA + + L Sbjct: 245 VTNEFIVPYASAKRTKWHRESYAVGALARFNLNYEKLHPKAKEAA-------ATLGLKPK 297 Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVG 473 + +T+ +I+ VHC E + N + + + +GVG Sbjct: 298 CINPYLNTVAQIV-ECVHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVG 356 Query: 474 FLEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +E PRG+L H+ + GI N ++P+ N+ N D+ ++ + Sbjct: 357 AVEVPRGLLIHHYECDERGIFRNANCIIPTNQNTH--NIELDMLKLVPEIINQSPEEIRL 414 Query: 533 PLEVVRTIHSFDPCMACAVHVVDAD 557 LE++ + ++DPC++C+VH+V+ Sbjct: 415 SLEML--VRAYDPCISCSVHMVEVK 437 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 109/575 (18%), Positives = 192/575 (33%), Gaps = 123/575 (21%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++ITI P+TRIEGH + ++++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T H L++ +A + +P A +R +++A H +H + LS D++ + Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYL-LEG 120 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A A A L + E K+ +I + A G HP +P Sbjct: 121 ATPATRNVAG--LAKANPDLARMAIEARKIGQRITEE---------AGGKPIHPVSAIPG 169 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ LE + +A+ Sbjct: 170 GMSFSLTEQKRAELEAYAKRSLEIAV------------------------------AAWN 199 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + D+ +DFV+ + V T I G + + Sbjct: 200 LVNGEFDRKADFVKTLGVVQTDFIGMTSGGKFETYDGPIRMMD----------------- 242 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 L ++ S K + K + Sbjct: 243 --ANGGSLGEFQAKDYSSHIEEYAEPYSYMKFTKLKSGSGF------------------- 281 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 VGPLA + V + G L E A Y G + L++ Sbjct: 282 -------------YRVGPLARVNVADSMGYPEADKMLAEFRAKY----GRAPQQPALYN- 323 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R + + AL + V+ + +GVG +EA RG Sbjct: 324 ----LARIIEVAAASE------RALALLQDRAITDKNVRNPVAGIKNTRGVGIVEATRGT 373 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + D G I++ +V + N+ + ++ + G AD ++ + Sbjct: 374 LIHDYTVNDKGFITSANLIVATGHNNRAID-RGVFETAKKYIHGD--ADEATLNKIEMLV 430 Query: 541 HSFDPCMACAVHVV----------DADGNEVVSVK 565 ++DPC++CA H + D++GN + VK Sbjct: 431 RAYDPCVSCATHAIGRMPIILSLFDSEGNVIREVK 465 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 109/581 (18%), Positives = 190/581 (32%), Gaps = 136/581 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M + ITIDPVTRIEGH RI +++ G+V T RG E R + + R Sbjct: 1 MPKTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 CG+C +H L+S +A + L + +P A +R ++ H + F+ L++ D + Sbjct: 61 TCGICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLL-- 118 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 L D + G++ +E ++ + L+ G HP + Sbjct: 119 ---LGMDAAPEQRNIFGLAAARPEVAKEGIALRRFGQQLIER------LAGKRIHPDWVV 169 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P GGV+ P++ + + E Sbjct: 170 P----------------------------------------GGVSRPLSRENGAAIAAEL 189 Query: 240 LMYIKSFIDKLSDF--VEQVYKVDTAVIAAFYPEWLTRGK--GAVNYLSVPEFPTDSKNG 295 +++ + L V + + + A A F WL G + Y P D + Sbjct: 190 PGMLQAAQNNLVLLQGVLENFTAEIAHFANFPSGWLALAGEAGQLEYYDGPLRLLDQQGE 249 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG 355 S P+ K +++ + P+A Sbjct: 250 EL-----------FSEADPLRYQQQLAEQSEADSYLKSPYHRPQGPEA------------ 286 Query: 356 WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 G Y VGPLA + G +E +A +++L+ Sbjct: 287 ----GLY-------------RVGPLARLNAARRCGTP----LADEALAAFRELSPQGPVT 325 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF---KGV 472 + H R+I ++Q +L + T P + AT +GV Sbjct: 326 SSFHYHYARLIEIIHGLEKIQQLLAD--------------DTIYDPRVRATAGANAPEGV 371 Query: 473 GFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWN------------------SGPRNFND 513 G EAPRG L H I + G IS ++ + N +G + Sbjct: 372 GICEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAIQRGLKQAARAFINGNGENDGES 431 Query: 514 DVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 + + + + +DPC++C+ H + Sbjct: 432 GKRAESREIAENKEIREGLLNRIEAVLRCYDPCLSCSTHAL 472 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 108/556 (19%), Positives = 187/556 (33%), Gaps = 103/556 (18%) Query: 5 ITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +TIDP+TR+EGH +ID ++ G V +A+ RG E R D I RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +++ +A + +++ A+ IR ++ A DH +H Y L D++ A Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFIVGPQA- 145 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P ++ ++ L + + ++++L+A + G HP + LP Sbjct: 146 ---PAAERNVIGVINKVGLEVGKRVIATRRRLRELIA------YFGGKVIHPVLGLP--- 193 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 GGVA + + L Sbjct: 194 -------------------------------------GGVAKGLKPED--------LATF 208 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 ++ DF + +V ++ ++ ++ + + Y Sbjct: 209 QALAADTLDFAQFTLQVFRDLV-----------------IANQDYVKLITSDPYTHRTYY 251 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHS--WYKDEAPQA--PWEGTTIPAYDGWSDD 359 + D ++ + +E AK Y++ + PW Sbjct: 252 MGLVDAANKVAFYDGQIRVVDADGREYAKFPVQRYREFIAEHVEPWSYVKFCYLKPLGWH 311 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G S + V PLA + V Q +E + L +H Sbjct: 312 GFEEGPASSIYA-----VAPLARLNVADGMATPLAQKAYDEYFSA--------LGGKPVH 358 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 TL R V + + S I D T IP G+G +EAPR Sbjct: 359 HTLANHWARVVEILAAAERMVELVSD--PEILSTDLRT-----IPTAKPTVGIGVVEAPR 411 Query: 480 GML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H+ + G+I+ +V + N+ R +SL+ + Sbjct: 412 GTLFHHYETDERGLITLANLIVAT-QNNAARIAMSVDRA-AKSLIKQGQVSDGLMNMIEM 469 Query: 539 TIHSFDPCMACAVHVV 554 ++DPC CA H + Sbjct: 470 AFRAYDPCFGCATHAL 485 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 114/578 (19%), Positives = 206/578 (35%), Gaps = 136/578 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M++ + I P TR+EGH ++ ++++ G+V + W S T RG+E++ + I Sbjct: 1 MTKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIAS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R+CG+C H L+S A E+++ ++P +A+ +R I+ AA+ H +H L D+ Sbjct: 61 RVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALH-NILILPDFYI 119 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + + + V Sbjct: 120 PGTEKKFNLFANEQPARSVMA--------------------------------------- 140 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGV---ANPINLDGLGVL 235 + + + A + A+ GG+ H N +GG+ +P + L Sbjct: 141 --------------RIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADL 186 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 E L+ + ++ + D + + + +A + P K G Sbjct: 187 AKEGLVLVHEQMEFMFDVIRNMQNREFVEVAGK------------------QIPLPKKLG 228 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA------PQAPWEGTT 349 G + A + + + + +E+ WY E P P GTT Sbjct: 229 YHN--QGVMATASMYGSSSLDDNPT-WDFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTT 285 Query: 350 IPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLT 409 + V PT+ G+ VEVGP A + +T +E Q + Sbjct: 286 KIGTKANPQMEACTGV--PTYDGQPVEVGPRARL---------ATFKNFDEKGTFAQHI- 333 Query: 410 GNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF 469 +E T+ R + D L L +I +GD + Sbjct: 334 ARQMEYPDCCYTILRCL----------DNLNTSGKVLADHIPQGDGSM------------ 371 Query: 470 KGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 G EAPRG H +KDG + Y +VP+TWN ++L G P Sbjct: 372 -GWAANEAPRGSNIHLARVKDGKVLWYDMLVPTTWNF---------PTCSRALTGAPWQI 421 Query: 530 PNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 + ++DPC++CA H++ + E + + L Sbjct: 422 ------AEMVVRAYDPCVSCATHMIVVNEEEKIVTQKL 453 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 137/717 (19%), Positives = 233/717 (32%), Gaps = 173/717 (24%) Query: 2 SQRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++ + I+P+ RI+ L I ++ V+ A+A+ M+RG E ++N+ D M+ R Sbjct: 14 TKPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRNKPGPDVIMLSSR 73 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA--AHTTHDHIVHFYQLSALDWV 117 CG+C H A E A + P + IILA A T+D H L DW Sbjct: 74 ECGICGEHHQFIERIAQEMAQGGNAPPPL-GLETIILANDAAMTYDATAHLTALGGPDWS 132 Query: 118 DITSALQAD-PTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + + P++ E+ + + + + + +A +L + Sbjct: 133 SLFFKVAGYFPSQIYEIAQQTPLSKVAQESQAFPMGAPTQLEMAGVKLKTVS-------- 184 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 L + I A++L+ R + L + PH + GG+ P ++ L Sbjct: 185 -DLMDALVPIIGAYFLEGAYSWRILHEAELLYYLRVPHPITMVPGGIGVPATVENL-QRY 242 Query: 237 LERLMYIKSFIDK-----------LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSV 285 +R++ +++ K L+D+ + G N++S Sbjct: 243 FQRMVDGTAWLMKQMAVYEYLTLFLADYNNTFGIQALYDKLNGTLGFAEEGNRPGNFVSY 302 Query: 286 P-----EFPTDSKNGSFLFP------------------GGYIENADLSSYRPITSHSDEY 322 E P+ + + + + P G + + +S + ++S Sbjct: 303 GQSDVSEAPSVTPSSTSVMPYDGTYENMGAWGRARVVKPGLVIQPNSNSPPQLVTNSLID 362 Query: 323 LIKGIQESAKHSWY---------------------KDEAP-----QAPWEGTTIPAYDGW 356 + GI+E + S+Y +D PW T+P Sbjct: 363 INLGIREFVESSFYTPWYENGSFNSEVPSSVSGIEEDPIGNKVSYYHPWRKWTMPNPQPR 422 Query: 357 SD----DGKYSWVKSPT---FYGKT--------VEVGPLANMLVKLAAGRESTQ------ 395 YSW SP + VE P+A M ++ + T Sbjct: 423 PVPMAYPAPYSWAVSPRIVPYQNHKPITNLFYNVEADPMAVMYAQVLQPQAPTPIYTSSY 482 Query: 396 -------------------NKLNEIVAIYQKLTGNTLEVAQLH-------------STLG 423 +N E+ + + + Sbjct: 483 PSGFEVSYNSNEMSATFYLPTVNSPRISLPPEFQQGSEIEFKYVAPYALSGGKIVTNAIE 542 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA-------TGEFKGVGFLE 476 R+ R + + + IT + KG P TG GVG E Sbjct: 543 RMRARAFEAGLDGMGMWIAWMSAITYLKKGMTQVSSMPPSSWTYKSNTNTGVALGVGMKE 602 Query: 477 APRGMLSHWMVIKDGI-----ISNYQAVVPSTWNSGPR---------------NFNDDVG 516 APRG H V G N Q + P+T NSGPR + G Sbjct: 603 APRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYDDGIQTIKPASPTHGAG 662 Query: 517 PYEQSLVGTPVADPNKP---------------LEVVRTIHSFDPCMACAVHVVDADG 558 +E+ L+G P D N P E +T+ SFDPC C VH+V +G Sbjct: 663 TFEEVLMGNP--DYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCFVCGVHMVLPNG 717 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 104/559 (18%), Positives = 185/559 (33%), Gaps = 116/559 (20%) Query: 7 IDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 ++PVTRIEGH +I ++ G V +RG E+ ++ R + IV RICG+C Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICD 60 Query: 66 TTHALSSVRAAESALNI---DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 H L++ +A + D+ A +R ++ H H +HFY L+A D V Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV----- 115 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 N + V I+D+ PE Sbjct: 116 ------------------VPNGTRKTRNVFQIIQDM----------------------PE 135 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 V L A ++ +R+ +V+ GG+ H + GG++ ++ + L L Sbjct: 136 VALQA-------IKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQADL----LAK 184 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 K ++ +E E + K + +K+G + G Sbjct: 185 AKENVELAQATIELA--------VPILEEKIDLVKTLGYFGDTRHCGIVTKDGDWDVYNG 236 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAK-HSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + D T + + + E K +SW K Sbjct: 237 KVRIKD-KDGSIYTEYRNLEYKDIVAEHVKPYSWL------------------------K 271 Query: 362 YSWVKSPTFYGKTVEVGPLANMLV--KLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 + ++K + V PL+ + V K+ Q L + + + L Sbjct: 272 FPYIKELGYPEGIYRVAPLSRINVCDKMPDAAPLAQGALEDFRDRF-----GYAQYPLLF 326 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 R + ++ + D + P+ +G G +EA R Sbjct: 327 -----HWARLIELLASAEMAVDALEQ--------DLSGDKFPDALERTAGEGAGIVEAAR 373 Query: 480 GMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H D G+I+ +V + N+ P + + D + Sbjct: 374 GTLIHHYTTDDEGLITQANIIVATIQNN-PAMEMGIQQVAKDYIKPGVEVDDKIFNLMEM 432 Query: 539 TIHSFDPCMACAVHVVDAD 557 I + DPC++CA H +D+ Sbjct: 433 VIRAHDPCLSCATHTMDSQ 451 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 97/457 (21%), Positives = 165/457 (36%), Gaps = 109/457 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS RI + P R+EG L I + + G V+ A + ++RG E I++ ++P DA + RI Sbjct: 1 MS-RIVVGPFNRVEGDLEIKLDTDQGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + +++S RA +++D+P+N Q N++LA D + HFY D+ Sbjct: 60 CGICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGI 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + W + F + ++ Sbjct: 120 YSNE--------------PWFDSVESRFKAQKGSAAKVM--------------------- 144 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL----- 235 L + + ++ ++ GK PH +L GG A PI L Sbjct: 145 --------------LPARSEFLHLMGIMAGKWPHSLSLQPGGSAKPIEAQERIRLLAILA 190 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLT-----------------RGKG 278 + + + F D L E + + +W G+ Sbjct: 191 SFRKFLEHTLFGDDLEAIAELGSWNELQNWREKH-DWQHSDFTRFLHLSDQLHLASMGRA 249 Query: 279 AVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD 338 +LS +P D + G LF G ++ + KGI E +SW + Sbjct: 250 TDQFLSYGNYP-DPQGG--LFKAGASFAGAVTD----------FDQKGITEDLAYSWMQS 296 Query: 339 -EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 P P G T P+ D ++ YSW K+P + +EVG LA L+ G + Sbjct: 297 VNGPVHPAAGNTEPSLD---NEAAYSWCKAPRLNRQVMEVGALARQLIN---GHPLAADL 350 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCE 434 ++ A + RII R + Sbjct: 351 VSRNGA----------------NVESRIIARLLRARY 371 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 92/561 (16%), Positives = 187/561 (33%), Gaps = 113/561 (20%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M ++I + PVTRIEGH +I ++++ + A + RG E+ ++ R +A IV + Sbjct: 1 MVKQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQ 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L++ +A + ++ P A +R ++ H H ++ Sbjct: 61 ICGICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHS---HSLHFY---FLGA 114 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + + Q + +V + Sbjct: 115 PDFVFT--------------------PDGNPTQRNVFGIVGANP---------------- 138 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 A +A+ ++ ++V G++ + GG++ + Sbjct: 139 ---------ALATEAVMFRKIGQQIVEATAGRSINPVTYIPGGISKGLT----------- 178 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 ++ +D+L +Q +A P + Y+ + ++++ Sbjct: 179 ----QADVDRLLPMAKQAVTYAQNALALAKPIF-------NQYIDAIKLLGEAES----M 223 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ-APWEGTTIPAYDGWSD 358 G ++N +L Y + + I+E + + + P P Sbjct: 224 HMGLVKNGNLELYDGMLRLQGK-DGSIIKEFKPQDYLQYISEYVYPHSYMKAPY------ 276 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 W K + V PL+ + V +L E + + Sbjct: 277 -----W-KEMGWENGMYRVSPLSRINVCDQIDTPLANAELQEFRKAFGR---------PA 321 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF-KGVGFLEA 477 TL R + + S T + +P GVG +EA Sbjct: 322 QMTLLYHYARLIELLYASEKAVELLSN--------KAITGKELRVPVKARAATGVGVIEA 373 Query: 478 PRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG L H + + G+I+ +V + N+ + N + Q ++ +P + + Sbjct: 374 PRGTLIHDYDTDEKGMITKANIIVATAHNN--KAINLGLKNTAQKIINSPTPEEGILNRM 431 Query: 537 VRTIHSFDPCMACAVHVVDAD 557 I ++DPC +CA H V Sbjct: 432 EMVIRAYDPCFSCATHSVAGK 452 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 180/552 (32%), Gaps = 110/552 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M Q I I PVTRIEGH I ++++ G V + RG E+ V+ + + IV R Sbjct: 1 MGQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C H L+S +A + + P + +R ++ A + D I+HFY L+A D+V Sbjct: 61 ICGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 D + GV+ H +++ K ++ Sbjct: 121 P-----DSDYGVRNVIGVAKAHPELAGRVVRMRYATKMILEK------------------ 157 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 GK H VGG + + + Sbjct: 158 ----------------------------FAGKAIHPHAGVVGGFSRVLLEEDR------- 182 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + F+ K+ + +E +P++L ++ ++ T +G+ Sbjct: 183 ----REFLGKMKEMLEFALFTIDFAKTQVFPKYLD-AVASLGVINTGFIGTVDDHGALNL 237 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA--PWEGTTIPAYDGWS 357 G I L D Y D + P P W+ Sbjct: 238 YDGKIR---LMKPDGSFVDFDPQD------------YLDYLGEHVEPHSYGKFPYARCWN 282 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + + P LA + V Q +L E + + Sbjct: 283 EG----FSLDPLQPRGIYRANTLARINVADKMATPRAQAELEEFREKFGR---------P 329 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE---FKGVGF 474 TL R + + PN+ A E +GVG Sbjct: 330 AQFTLLHHWARLIEEVYACEHAIELLE----------DPEITDPNVRAKVEPKAGRGVGC 379 Query: 475 LEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 LEAPRG L H + G+++ +V +T N GP + + + ++L+ V D Sbjct: 380 LEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQ--AARTLIQRGVVDETIL 437 Query: 534 LEVVRTIHSFDP 545 ++ + ++DP Sbjct: 438 NKIEMAVRAYDP 449 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 234 bits (596), Expect = 7e-60, Method: Composition-based stats. Identities = 108/574 (18%), Positives = 190/574 (33%), Gaps = 121/574 (21%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +++TI P++RIEGH + +++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T H L+S +A + VP A +R ++ H H +H + L+ D++ Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPD 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A + + K+ +I + G HP +P Sbjct: 122 YNPALRNVVGLVQANPELAKMAIEGR--KIGQRITEE---------TGGKPIHPVSAVPG 170 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ LE + +A + P + + Sbjct: 171 GMSFALANEKRAELEAMAKRSVEIARIS--WPVVMKMM---------------------- 206 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 DK +D V V V + + ++NG F Sbjct: 207 ------DKYADLVNSVGLVQSDFVGL------------------------TRNGKLEFYD 236 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + +YL I+E+A+ P+ + Sbjct: 237 GNVRAIDSGGVQLADFPGKDYL-SYIEETAE-----------PYSYMKFTKLKKGN---- 280 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 VGPLA + + + G L E A Y ++ +L Sbjct: 281 -----------GFYRVGPLARVNIVDSIGTPEADKMLAEFRAKYGRVPQQSL-------- 321 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 H + + +AL V+ + +G+G +EA RG Sbjct: 322 -------LYHAARTIEYMAASETALSLLQDSAITDKNVRTAVTGVKNTRGIGVVEATRGT 374 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + D G I+ +V + N+ R + V Q L+ + + Sbjct: 375 LIHDYTVNDKGFITKANLIVATGHNN--RAIDRAVLQSSQKLIHGDNVSEGTLNRIEMVV 432 Query: 541 HSFDPCMACAVH----------VVDADGNEVVSV 564 ++DPC++CA H VVD++GN + V Sbjct: 433 RAYDPCVSCATHAIGRMPVQLTVVDSEGNVIREV 466 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 94/548 (17%), Positives = 179/548 (32%), Gaps = 132/548 (24%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG +++ + R +E+I++ + DA +I R+CG+C Sbjct: 2 IELIEKIEGEAKLNFSFAGEEIDFVDIEFMTARNIEKILEGKSALDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 H +++V+A E NI++ A+ IR + L +H FY + L+A Sbjct: 62 AHLIATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKA 121 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 M K ++ + G + H + + V Sbjct: 122 TY-PTQLMAKAIAVF----------------------------GGQYPHTSYAIVGGVVC 152 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 + ++ + + N + D L + + + Sbjct: 153 DITE--IDIIKIKHYIEETIKFFE--------------TNLVQADTKDFLVCDNVDKVLK 196 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIE 305 L D + ++ K ++L GK +++ E +K S Sbjct: 197 KNGDLPDILREIKK----------KKYLDHGKSYDRFIAFGENSYFTKGKSH-------- 238 Query: 306 NADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWV 365 T + I ++E D S Sbjct: 239 ---------KTITTHNISIDYVKE----------------------------QDNLNSLA 261 Query: 366 KSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRI 425 K+ T+ K EVGPLA ++ + + + + + RI Sbjct: 262 KNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGD-------------------NIFSRI 302 Query: 426 IGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFLEAPRGMLSH 484 I R +L + + L ++++PNI + G +EA RG L H Sbjct: 303 IARVCEIPQLLNHSKELLEKL-----DLSEPSYIEPNIDISQINASGESAVEAARGSLIH 357 Query: 485 WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 + +++GII NY+ + P+ WN G +++G +Q++VG +FD Sbjct: 358 KVELENGIIKNYEIITPTQWNLG-NGTRENLGVSQQAMVGLKDVKT-----AELVFKTFD 411 Query: 545 PCMACAVH 552 C C H Sbjct: 412 VCSVCTTH 419 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 228 bits (580), Expect = 5e-58, Method: Composition-based stats. Identities = 114/558 (20%), Positives = 184/558 (32%), Gaps = 140/558 (25%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+PV+RIEGH ++ +++ G V A+ T +RG E+I+ + +V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C H ++++AA+ ++ A+ +R ++L AH DH + L+ D++ Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALPDFLSPEE- 120 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + I++L G+ + GY Sbjct: 121 --------------------------RNIFGVIRNLGELGRELLRKRGY----------- 143 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 A R++ +LGG+ H GG A + LG++ Y Sbjct: 144 ------------------AVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIE----RY 181 Query: 243 IKSFIDKLSDFVEQVY-KVDTAV-IAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 + +D VE + +D + T KG VN E + G + Sbjct: 182 SRELLDLGYRMVEVLEAALDMGDGLELRAATLGTEKKGLVNLYD-GEQVVKDEEGKEVLR 240 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 E AD+ I E + Y P Sbjct: 241 FSGKEYADI-----------------ITEKSLSWSYSKLTEIKPLGEKLYV--------- 274 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 VGPLA + + K + ++ Sbjct: 275 ----------------VGPLARLKTA----------------ELTPKASEIVKTYGVSNN 302 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 L R V + L + + N P +GVG +EAPRG Sbjct: 303 LLYNHFARAVEIIYAAERLLELSQSYRGGRIQ---------NEPQKVAGEGVGIVEAPRG 353 Query: 481 ML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 L H+ + GI+ +V +T N R N VG + +D E V Sbjct: 354 TLIHHYWTDEKGIVRGSNLIVATTHNV--RAINHVVGKVAE-----RASDTRNLAEKVEV 406 Query: 540 -IHSFDPCMACAVHVVDA 556 I +FDPCMACA H V+ Sbjct: 407 AIRAFDPCMACATHAVNG 424 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 228 bits (580), Expect = 6e-58, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 126/283 (44%), Gaps = 33/283 (11%) Query: 258 YKVDTAVIAAFYPEWLTRGKGAVNYLSVPEF--PTDSKNGSFLFPGGYIENADLSSYRPI 315 DT +IA Y + L GKG Y++ F P+ ++ G EN +++ Sbjct: 1 MIPDTKIIAPAYTDALHFGKGCGRYVAWGVFERPSMEPTDRYMPAGVVWENLNVTDPDE- 59 Query: 316 TSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG--------------- 360 I+E HSWY ++ P EG T P Y + G Sbjct: 60 ---------ALIKEYVGHSWYVGDSDLNPVEGVTDPEYTSYYVPGSEHEENGHMIGTVND 110 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 +Y+W K P++ GK +E GP + +L G E + ++ + A+ L L + L S Sbjct: 111 RYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADL---GLTIPDLQS 167 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TLGR+ R V C + +++ LI I +GD F P +G G EAPRG Sbjct: 168 TLGRVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPE---RLSGRGTGMWEAPRG 224 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 L H + +G I+ YQ ++P+TWN PRN GP EQ+L+ Sbjct: 225 ALLHTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 227 bits (579), Expect = 8e-58, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 175/551 (31%), Gaps = 155/551 (28%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG ++ + + ++ +RG+EEI++ RDP DA +I RICG+C Sbjct: 3 IELLEKIEGEAFLEFQKDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICGH 62 Query: 67 THALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQAD 126 H ++ ES +++ A+ IR I +HI FY Sbjct: 63 AHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYL---------------- 106 Query: 127 PTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLI 186 V LN P +FTKV + I + +L +G W H + Sbjct: 107 ----------VIFHELNIPYDFTKVHHLIVTI---NKLLALFSGQWPHSSY--------- 144 Query: 187 AVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN---LDGLGVLNLERLMYI 243 VGGV + L + Sbjct: 145 -------------------------------CVVGGVTCDPTSLEIHQAKTLIQQIRDQF 173 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 I KL D + + E L GK +++ Sbjct: 174 IQLIGKLHDPLNLTNDLQKLYRTLQEKELLLVGKSHDRFITFS----------------- 216 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 +++ +S+ + + + + I+E+ + K S Sbjct: 217 -QDSHVSNIKLLHGQKRKTKLTLIEEN----------------------------EQKRS 247 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + K+ T+ GK E GPLA ++ + + V + + + S Sbjct: 248 YAKNVTYNGKYYETGPLARLM-----------QQTDPFVRYFHRRFKD--------SITT 288 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF--LEAPRGM 481 RII R L + + + + +P++ + G +EA RG Sbjct: 289 RIIARIYEVSLLIEKIIDHLA----------TIDLSQPSVVESKMQDGTAIISIEAARGS 338 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H I G I Y + P+ WN + ++++VGT Sbjct: 339 LIHQATIHQGKIETYNFITPTQWNLSNGTSQ-NPSVIQKAIVGTSDEKIANL-----IFR 392 Query: 542 SFDPCMACAVH 552 SFD C C H Sbjct: 393 SFDICSVCTTH 403 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 197/567 (34%), Gaps = 144/567 (25%) Query: 1 MSQRITI--DPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIV 57 MS I + D VTR+EGH I E+G + W R E ++ R ++ + Sbjct: 1 MSHTIDVEGDLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RIC +C+ +H ++S++A E+AL + V + +R + L T H++H L+ D V Sbjct: 61 SRICAICSVSHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLV 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 S L T E+ + + ++ N++ ++V + H Sbjct: 121 GEKSVLPLADTHEDEL---------ETVIDLHRLGNELTEVVTGRSV---------HAQR 162 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +P ++ + LQAL L Sbjct: 163 LVPGGISQLPEESELQAL-----------------------------------------L 181 Query: 238 ERLMYIKSFIDKLSDFVEQ------VYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 +RL+ + +L+D + ++ +T I+ +PE +G + V E P Sbjct: 182 DRLVNSWDAVAELADLLAVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVGEIPV- 240 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 S Y+D A + E +T Sbjct: 241 ------------------------------------------SDYRDVANEYVVEHSTAK 258 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 + Y F ++ P A + N Y Sbjct: 259 FARHERES--YMVGALARFNNNADQLAPRATEIADRFGLDAPVHNP-------YLNNVAQ 309 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 +EVA L R+I AL+ + G + + P I T +G Sbjct: 310 LVEVAHLLGESVRLI-----------------EALLDD-GLTPQSNYHVPEIDPTA-GQG 350 Query: 472 VGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 +G +E PRG+L H D G ++ V+P+ N G N D+ ++V P + Sbjct: 351 IGAIEVPRGVLFHEYAYDDTGEVTEANCVIPTNQNHG--NIQRDMETLVPTIVDHPEDEI 408 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDAD 557 LE++ + ++DPC++C+ H +D + Sbjct: 409 KHSLEML--VRAYDPCISCSTHYLDVE 433 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 109/576 (18%), Positives = 181/576 (31%), Gaps = 106/576 (18%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I + E G V A+ + G E+ + + V IC Sbjct: 19 KKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVSTIC 78 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GV H +SV+AA++ ++ A+ IR + AH DH Y L D+V + Sbjct: 79 GVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCGPT 138 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A A+ +L KV + LV + Sbjct: 139 ASPAERNLVGLVL---------------KVGADVGKLVLKKRYS---------------- 167 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 A ++ L G+ H GG + I + + L Sbjct: 168 -------------------AVKIFELTSGRPSHPVAALPGGWSKRITEEERKEI-LACAD 207 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 D ++V + +A + NY+ D + + G Sbjct: 208 DCIELAKLTLDVFDKVVLQNKEYMALVTGDVYKV---VTNYIGT----VDENDKVTYYDG 260 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + + + + I E PW P +G Sbjct: 261 --TQKIVDTKGNELGRFKGIQYLDYIAER-----------TLPWSYQKAPYLKKLGWNGL 307 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 + + VGPLA V Q +++A + +H T Sbjct: 308 VDGDGTSIYS-----VGPLARFNVGSGFDTPLAQEAYEKMLAAFGG--------KPVHHT 354 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 L R + + ++ D + P +GVG +EA RG+ Sbjct: 355 LAYHWTRAIELM----HAAETVKKIASDESITDPNVRQELGTPV---GEGVGIVEAARGV 407 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H D GI+++ +V +T N GP N QS + D V Sbjct: 408 LIHHYKTDDKGIVTDANLIVATTHNKGPMNIAVKR--AAQSFIKNGKVDEGILNLVEIAY 465 Query: 541 HSFDPCMACAVH-----------VVDADGNEVVSVK 565 +D C AC+ H ++D G V S++ Sbjct: 466 RPYDLCFACSTHTLPGRIPVRIDIIDHHGELVKSLR 501 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 95/555 (17%), Positives = 173/555 (31%), Gaps = 128/555 (23%) Query: 1 MSQR-ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQ 58 M++ I +D + R+EGH + IE+G V + R E +V+ R + I Sbjct: 1 MTKTAIHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C+++H ++ ++A E ++V + +R +++ +H H + +A D Sbjct: 61 RICGICSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPD--- 117 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 F P + Sbjct: 118 ------------------------------------------------FLGMPSVFPLAQ 129 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 PE+ + QAL + N + +GG++ H VGG + I L + Sbjct: 130 TDPEL-------FEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLEL-AD 181 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 ++ F + D D A + +P + + +F Sbjct: 182 KMDAAMDFALEAVDLFRGFEVPDIATAGDMLA-----------MVEDDYYPVECSDQAFF 230 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 G + + +QE E +P Sbjct: 231 LNAGIV-----------------FDANEVQEHI--------------EEHAVPHSAAL-- 257 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + G LA + QN K E Sbjct: 258 ------LARVRETQSPYFTGALARVNAS-------WQNLGQNAKVAAAKAGLRPPEANPF 304 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + + + E+ D L G + P + VGF EAP Sbjct: 305 MNNVAQ-------AVEIVDALDRCADLCRKLAEPGAIASSSLPVPFEVKAGRAVGFTEAP 357 Query: 479 RGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + + +G +++ + P+ N N D+ + LV A+ LE+ Sbjct: 358 RGALFHDLTLDAEGRVTHASILTPTAQNVA--NLEADMRLLAEKLVADGAAEDVVRLEIE 415 Query: 538 RTIHSFDPCMACAVH 552 + + ++DPC++C+VH Sbjct: 416 KLVRAYDPCLSCSVH 430 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 113/581 (19%), Positives = 187/581 (32%), Gaps = 116/581 (19%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I +++ G V+ A+ +RG E ++ + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC H +S +A++ ++ A+ IR + L AH DH Y L D+V Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFVVGIE 124 Query: 122 ALQADPTKASEMLK-GVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A A+ + K GV + F V+ + G HP LP Sbjct: 125 ADPAERNLVGLIKKVGVDVGKTVLKKRFAAVK-----------VLEMLGGKPIHPVAGLP 173 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 + + +E + LG L L+ Sbjct: 174 GGWSKRITEDERKEIEALAK---------------------------EMVELGELTLQVF 206 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 + +KL + + D + Y + Y N F F Sbjct: 207 EDVILKNEKLLELI----TADYYRVVVNYLGTVDDAGKVNYYDGWQVGIDTKGNEVFRFK 262 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G D +Y I E PW +P + G Sbjct: 263 G-----KDYLNY--------------IAERV-----------VPWSYVKMPYFKQLGWKG 292 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 + + VGPLA + G +T ++ L +H Sbjct: 293 FVDGEGTSLYS-----VGPLARCNI----GDMNTPKAKEAQEKMFDVLKER-----PIHY 338 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA---TGEFKGVGFLEA 477 + R V + + P++ A +GVG +EA Sbjct: 339 IMAYHWARAVELLNAAERVLELAQ----------DPEITSPDVRAELGEVTGEGVGIIEA 388 Query: 478 PRGMLSHWMV-IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG L H ++GI+++ +V +T N P N + Q + +K L Sbjct: 389 PRGTLIHHYKTDENGIVTDANLIVATTHNHAPINIA--IKKAAQHFIQENKEINDKLLNY 446 Query: 537 VRTI-HSFDPCMACAVH-----------VVDADGNEVVSVK 565 V +D C ACA H V D++G + +++ Sbjct: 447 VEIAYRPYDICQACASHALPGRYPLEVLVYDSEGELIKTIR 487 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 103/557 (18%), Positives = 181/557 (32%), Gaps = 152/557 (27%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I + +IEG +++ + + R +E I+K + DA +I R+CG+C Sbjct: 2 IKIIEKIEGEAKLNFNFKENKIDFVDVEFMSTRNIENILKGKRAFDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 H +++V+A ES N+ + A+ IR + L +H FY + L+A Sbjct: 62 AHLMATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKA 121 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP---- 181 T S+++ G + H + + Sbjct: 122 --TYPSQLMSKAIA---------------------------VIGGQYPHTSYAIVGGVAC 152 Query: 182 ---EVNLIAVAHYL-QALEC-QRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 E++LI V HY+ Q L+ +++ +V + + KT +L G Sbjct: 153 EITEIDLIKVQHYIAQTLKFVEQNLLKVESEVFLKTEDANSLYDG--------------- 197 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 + +D++ + E L GK ++S E K S Sbjct: 198 -----DLTEILDEIKN-----------------SELLGYGKSYDRFISFGENSFFKKGKS 235 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 ++ H+ I D Sbjct: 236 ------------------------------VKTKVTHN---------------ISLVDVK 250 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 S+ K+ +F K EVGPL+ ++ K + Sbjct: 251 ESQITSSFAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGD---------------- 294 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFL 475 S RI+ R L LI I ++++P+I + G + Sbjct: 295 ---SIFSRILARIYE----ISQLLEHSRGLIKKIDLS-QPSYIEPSIDISKLSGSGYSAV 346 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 EA RG L H + ++ GII NY+ + P+ WN ++ G ++++VG Sbjct: 347 EAARGTLIHRVELESGIIKNYEIITPTQWNLS-GGTRENHGVSQRAMVGLSDVKI----- 400 Query: 536 VVRTIHSFDPCMACAVH 552 SFD C C H Sbjct: 401 AELVFKSFDVCSVCTTH 417 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 108/557 (19%), Positives = 178/557 (31%), Gaps = 108/557 (19%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 S+ I IDPVTRIEGH ++ + E+G + A RG E+I+ + I RI Sbjct: 10 SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKILVGMEANRMPHITARI 69 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC T H +++ A + A + P A +R ++ H H H + + L D V Sbjct: 70 CGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLV--- 126 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 L D A + G+ + ++ +++ +L G HP Sbjct: 127 --LGLDADPAIRNVVGIVQANPEVAKKALRIR------TVGQRLNEIVGGRGTHPV---- 174 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 GG+ ++ + +L + Sbjct: 175 ------------------------------------TSVAGGITFVLDSEKRAML-QSLV 197 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 K L+ V+Q+ A +W+ L Sbjct: 198 DEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGTVLD----------NRVSLI 247 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G I D + + +Y ++ S+ K G+ G Sbjct: 248 QGNIRAVDENGITQVEFPVQDYDKYMVESVVDFSYMKR---------------VGFKKGG 292 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 VGPLA + E ++ E++ L H Sbjct: 293 LL----------HDYRVGPLARINAMQQFSTEWANREMEEMLK---------LGGYPCHI 333 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TL + + V + + N G+ VK + VG EAPRG Sbjct: 334 TLFQAYAKLVEMIWAIERADDILRDPAVN---GETRVPVKFQ-----GGRAVGHSEAPRG 385 Query: 481 MLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 L H + + +DGI+ +V + N N + +S V D + + Sbjct: 386 TLIHDYEIDEDGIVRAANLIVATQQNYAI--INRSIEHAAKSHVIGKSDDQALLNAIEFS 443 Query: 540 IHSFDPCMACAVHVVDA 556 I +DPC++CA H V A Sbjct: 444 IRCYDPCLSCATHAVGA 460 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 105/505 (20%), Positives = 174/505 (34%), Gaps = 107/505 (21%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+P++R+EGH ++ + ENG T RG E+ V R + IV RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C T H L+SV+A ++A +++P A+ +R ++ + H H +HFY L+A D+V A Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGPDA 122 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 A + K + K KI + V + G G A +L E Sbjct: 123 DPAIRNIVGVIDK--APDVAKQAIALRKFGQKIVEAVGGKAIHPVT-GIPGGQAKRLTEE 179 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 + Q +E ++ ++ L + + LGV++ L Sbjct: 180 ERDELLKDADQMIEYAKNGVELIKQLNEQY-------------MEQIKTLGVIDTYYLGL 226 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 +K D + D F PE +NY+ G ++ P Sbjct: 227 VKDGKHNFYDDTLRFLSPDGKEKVEFKPEE------YLNYI-----------GEYVVPYN 269 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 Y KH +YK Sbjct: 270 Y---------------------------VKHPYYKK------------------------ 278 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 + VGPLA + V E E + ++ G + ++ Sbjct: 279 -----VGYPEGVYRVGPLAMLNVC----DEMETPLAEEYRKEFLEIFGFPANQSLAYNH- 328 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R + E + + +I D V+P GVG + APRG+L Sbjct: 329 ----ARLIELVEACEKAKILLED--NDITSDDIKADVEPK-----AGNGVGVVYAPRGVL 377 Query: 483 SH-WMVIKDGIISNYQAVVPSTWNS 506 H + ++GI+ +V +T N Sbjct: 378 IHNYETDENGIVVKANMIVATTHNV 402 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 104/566 (18%), Positives = 189/566 (33%), Gaps = 151/566 (26%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +IT + R+EG + + E G ++KA GT R I+K + D+ +++ R+CG+ Sbjct: 2 KITKTILNRLEGEVELKLEYSKGKIAKAHILGTSNRDFSSILKAKPYLDSIILIPRVCGI 61 Query: 64 CTTTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H ++SV+A E A + + A +R I L Sbjct: 62 CGHAHLMASVKAIEDAYKNECSDFHLSTKASLVRYITLL--------------------- 100 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + ++ E K+ + D + Sbjct: 101 -----------SEMIQNHIRWFYAYFMSEIPKLDRNMVDYL------------------- 130 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + + + +++AL GG+ PH GG+ + L Sbjct: 131 ------PFDGEKWRRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSF 184 Query: 239 RLMYIKSF--------IDKLSDFVEQVY-------KVDTAVIAAFYPEWLTRGKGAVNYL 283 +KS IDK F + D +++ + ++ +G +L Sbjct: 185 CKELLKSIETYIIGISIDKYLSFSKDELLNHKEGDIGDFIRLSSTF-DFFHKGIAYKRFL 243 Query: 284 SVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA 343 + EN S+ + E+ K I+E Sbjct: 244 TGGSI-------KGYVDAAVFENGIKESFDVKNIDTKEHEFKKIKE-------------- 282 Query: 344 PWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVA 403 + + K E GPLA + L E Sbjct: 283 ---------------------ITGAVYNKKRFETGPLARKINS---SNSLFLELLEEFGD 318 Query: 404 IYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI 463 S R++ R L ++++ A+ +I K +++KP I Sbjct: 319 ----------------SLFLRVMARVDEIVSLTLLIKDALDAI--DIRK---PSYIKPPI 357 Query: 464 PATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 KGVG +EA RG L H + I++G + +Y+ V P+ WN G + +D+ P ++S+V Sbjct: 358 KEPFTGKGVGIVEAARGTLIHEINIENGFVKDYKIVTPTLWNLGNYD--EDMSPAQKSIV 415 Query: 524 GTPVADPNKPLEVVRTIHSFDPCMAC 549 G +E ++ SFD C +C Sbjct: 416 GLSSD-----VEAYLSLRSFDVCASC 436 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 147/446 (32%), Gaps = 100/446 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG + + E G + A+ +RG E I++N+ D +I R+CG+ Sbjct: 3 KIEKTVLNRVEGEIELKLIWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCGI 62 Query: 64 CTTTHALSSVRAAESA-----LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H +++ A E+ I+V A+ IRNI L+ +H+ FY D++ Sbjct: 63 CGHAHLIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLK 122 Query: 119 ITSALQ-ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 AL+ P K + K V ++ +KI ++A G W H + Sbjct: 123 FNKALEDFYPIKGKKWRKAV------------ELSSKIVKVIA------IFAGQWPHTSY 164 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +P V Q + ++++ + + +G + + L + NL Sbjct: 165 SVPGGV---------MCEPTQTEIIEAISIVDSVLEYFEEDVIGMKID----EYLSITNL 211 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + + L +E+ K+ I Y +L+V G Sbjct: 212 KEFLDKSE--GDLKTIIEEAMKLGFKDIGKAY----------DRFLTVCNINPFISEGIT 259 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 + I ++E S+ + Sbjct: 260 R------------------RKKCSFDINKVKEIETFSFLE--------------KGKPKF 287 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 KYSW K+P + GK E GPLA + + N + Y Sbjct: 288 SKRKYSWAKAPRYEGKPFETGPLARRINNE---DKLFLNLVKTFKGYYIP---------- 334 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQY 443 RI R +L ++ Sbjct: 335 ------RIWARVDEIGKLLLAVKEYL 354 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 115/231 (49%), Gaps = 16/231 (6%) Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 + W G + D W G L ++ + +N L Sbjct: 48 STGTMWRGLEVILKGRDPRDA---WAFVERICGVCTGTHALTSI--------RAVENALG 96 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT-- 457 + L L STLGR R + + LQ + L+ N+ GD T Sbjct: 97 IAIPDNANCIRKKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATAN 156 Query: 458 --FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDV 515 +P+ T KGVGF EAPRG L HW+ I++ I +YQ VVP+TWN+GPR+ + Sbjct: 157 VTLWEPDTWPTS-AKGVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQI 215 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 G YE +L+GT +A P++PLE++RT+HSFDPC+AC+ HV+D G E+V V+V Sbjct: 216 GAYEAALMGTKLAVPDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQV 266 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 56/92 (60%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +RI +DPVTRIEGH+R + I+ N V++ A ++GTMWRG+E I+K RDPRDAW V+RI Sbjct: 16 GRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIR 92 CGVCT THAL+S+RA E+AL I +P NA IR Sbjct: 76 CGVCTGTHALTSIRAVENALGIAIPDNANCIR 107 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 93/557 (16%), Positives = 175/557 (31%), Gaps = 146/557 (26%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I + +TR+EG I ENG + + R +E I+K ++ + RIC Sbjct: 2 KKIE-NLLTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRIC 60 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C + +S V+A E A + V + +R + H VH + L D+++ Sbjct: 61 GICPVAYQISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLN--- 117 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 KG EF K+ IK+ + Sbjct: 118 -------------KGSVFEVGKDSPEFLKIGTIIKNAGS--------------------- 143 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ +GG+ H +++VGG + D L + Sbjct: 144 ---------------------EIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEK 182 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPE--FPTDSKNGSFLF 299 + + L F E + D + P+ +++LS+ E +P Sbjct: 183 ALDLSVYALKRFSEFNF-PDNEI-----PD--------IHFLSLEEEEYP---------- 218 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 I D+ S + + +E+ + HS Sbjct: 219 ----ILKGDIVSNKGLRLTKEEFDNVIKEYQVDHS------------------------- 249 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 + ++ + VGP++ +I + Sbjct: 250 ---TAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDID-----------LYPPIK 295 Query: 420 STLGRIIGRTVHCCELQDILQNQYSAL-ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 ++ I+ R V + + ++ D+T E G G EAP Sbjct: 296 NSFKTILIRMVEIIHSLERSIDLIKDYRKESLKNADYTV---------KEGTGYGVSEAP 346 Query: 479 RGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG+L H +G I V P++ N D + ++++ Sbjct: 347 RGILWHKYSFDSEGKIKKADIVPPTSQN------QDIMEVSVRNMIMNRENIEEILKTGE 400 Query: 538 RTIHSFDPCMACAVHVV 554 + I +FDPC++CA H + Sbjct: 401 KVIRNFDPCISCATHFL 417 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 183/559 (32%), Gaps = 147/559 (26%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS+ + IDP+TR+EG R+ E V R E ++K + P V R Sbjct: 1 MSE-VRIDPLTRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVAR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C + L++V A ES + VP + + +R I H H + ++ + Sbjct: 60 ICGLCPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIF------FLHL 113 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + E F ++ + ++L+ +G Sbjct: 114 PDFYE--------------------RESFLELMREKRELLEAG----------------- 136 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 L+ ++ N ++ LLGG+ H N+ VGG + + Sbjct: 137 ---------------LQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENT---- 177 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 L I+S + +E D YPE ++S+ Sbjct: 178 LAEIESALPFAEKALELFLNFD-------YPEMEKERI----FVSLGNHEVYP------- 219 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 I S + +EY ++ HS Sbjct: 220 ----ITEGSAVSSEGMNIEKNEYEEYFVEYQLPHS------------------------T 251 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS +K GK EVG LA + + + K+ ++ Sbjct: 252 ALYSRLK----DGKAYEVGALARIYNNFGKLPQDLREKVEGVLPARNPFKS--------- 298 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 II R V ++ +G V+ +I E +GVG EAPR Sbjct: 299 -----IIARIVEVIYALREAKHILEKF-----EGGEPH-VEYSIR---EGEGVGITEAPR 344 Query: 480 GMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTP-VADPNKPLEVV 537 G+L H + G + V P++ N E L+G + + + + Sbjct: 345 GILYHRYRVNSKGEVVFANIVPPTSQNQRAME--------EDVLLGLKTLKNGDIRVLAE 396 Query: 538 RTIHSFDPCMACAVHVVDA 556 + + +FDPC++CA H ++ Sbjct: 397 KLVRNFDPCISCASHFLEV 415 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 96/544 (17%), Positives = 161/544 (29%), Gaps = 174/544 (31%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 EG + ++G++ +RG+E+ + NR DA +I RICG+C H L++ Sbjct: 12 EGEAELKIYQKDGIIDFVEIFFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLATA 71 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 +A E+ALN+ + A+ +R+I +HI FY + S + Sbjct: 72 KAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYL----------TLYPTQIKDKSYI 121 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 LK ++ S G + H + +P Sbjct: 122 LKALNIVKKISKII------------------AIIGGQFPHNSYIIP------------- 150 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 GGV + ++ IK+ + KL + Sbjct: 151 ---------------------------GGVTCDLTNLD--------IIKIKNLLKKLRED 175 Query: 254 V-----EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 + E D P+ GK +L + + NG+F Sbjct: 176 IYTIIDENGKSHDLEKFFENLPK--NIGKSLNKFLVLGDNLFFKPNGTF----------- 222 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSP 368 ++E + +S++ K+ Sbjct: 223 ----------------TNVKEFSNNSFF-----------------------------KNV 237 Query: 369 TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGR 428 + + EVGPLA Q T NT+ S RI R Sbjct: 238 LYNEEYYEVGPLAR---------------------NLQNKTINTIYEKYQDSIYTRIFAR 276 Query: 429 TVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 + + L + L D T N GV +EAPRG L H + I Sbjct: 277 LYEILLIINYLIKEIEDL-------DITQKSFLNYKKRTCGSGVSVIEAPRGSLIHKIKI 329 Query: 489 KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMA 548 ++ I Y V+PS + + + +L+ + + FD C Sbjct: 330 ENEKIKFYDIVMPSQFYLS-NGTKEKPSASQMALIREEIKFIDT------IFKCFDICAV 382 Query: 549 CAVH 552 C H Sbjct: 383 CVTH 386 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 103/550 (18%), Positives = 180/550 (32%), Gaps = 134/550 (24%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I I +TR+EGH I ++NG + +A WA R E ++K A + RICG+ Sbjct: 9 INIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGI 68 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ +H+L+++RA E A+ Sbjct: 69 CSISHSLANIRALER-------------------------------------------AM 85 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 Q P +E+++ ++ + + + G P++ E Sbjct: 86 QITPPPLAEVVRRLAMHGETLQSHALHL------------FFLAVPDFAGLPSVLPLMES 133 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + V LQ E + A G+ H +L +GG+ L L L L Sbjct: 134 HPQVVRAGLQLKELGNSISIAAA---GRATHPVSLVLGGITKAPELQQLKEL-LTMTQER 189 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 K + + F E+++ I F E ++S+ T G Sbjct: 190 KLALAQAVTFFEELH------IPNFTRE--------TEFISLCNGVTYPAIG-------- 227 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 L S IT ++YL+ + ++ D +S Sbjct: 228 ---GQLVSSDGITRDENDYLLMT---------------------------NEYTRD--FS 255 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 K + G LA + Q H+ Sbjct: 256 TSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVAARFGLQ-----------PVCHNPFM 304 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 I + V C + + + ++ G+ + G +EAPRG+L Sbjct: 305 NNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTP------QAGAATGAVEAPRGILY 358 Query: 484 HWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H+M D G++ ++P+T N+G N DD+ L+ D L+ + S Sbjct: 359 HYMETNDEGMVVRADCIIPTTQNNG--NIYDDLQALAAELLREGKCDGEIQLQCEMLVRS 416 Query: 543 FDPCMACAVH 552 +DPC++C+VH Sbjct: 417 YDPCISCSVH 426 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 99/554 (17%), Positives = 173/554 (31%), Gaps = 166/554 (29%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M + + I+P TR EGH ++ ++++ G+V K + S T RG E+ + + A + V Sbjct: 1 MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R CG+C HA S+V A E A I P + L + Sbjct: 61 RFCGICPIAHATSAVEAIEDACGIVPPKDG----------------------LLLRELTG 98 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + + P + +F +++++ + Q Sbjct: 99 LGNKMHSHPLHEFLIAP-----------DFIPEKDRVEYITRIQQ--------------- 132 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 ++ +V +GG+ H N+ VGG+ I + + Sbjct: 133 ------------------MRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYY- 173 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + + + +++ +++ T V PE L Y TDS G+ Sbjct: 174 KCKEFEKLAKEQVEYLIPIFENRTLVDGTEIPEKLG-------YHDFGYLATDSTYGN-- 224 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 +E+ + + P +E Sbjct: 225 -----------------------------RENIEQKKVHEYTPYDVYEKEVAVQACQLFQ 255 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + + G+ +EVGP A + +K Sbjct: 256 E----------YNGRLMEVGPRAR---------------FAKFHDFKEK----------- 279 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + I R L D T K I GE G+G EA Sbjct: 280 -GAMAIHIARAYENVIHVKRAMEIIEEL-----NVDGLTRAKDPILGDGEKLGLGVHEAA 333 Query: 479 RGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG +H I + G I+ Y A+V +TWN L+G V K E Sbjct: 334 RGHNTHQASIDEKGRITYYNAIVATTWNIP--------------LIGKAVEAHYKFAE-- 377 Query: 538 RTIHSFDPCMACAV 551 + ++DPC++CA Sbjct: 378 HVVRAYDPCVSCAT 391 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 4/164 (2%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ I IDP+TRIEGHLR++ E++NGVV+ AW SG +RGME +V++R P DA IVQRI Sbjct: 1 MARSI-IDPITRIEGHLRVEMEVDNGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA S AAE A +I + NA+ IRNII A H HI+ FY L+ D+V+ Sbjct: 60 CGVCPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQL 164 +AL A+ A ++ VS+ + T + K+ G Sbjct: 120 NALNANIATAYDL---VSSAGTGCQTDLTALAQKLTSSPTMGSF 160 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 94/539 (17%), Positives = 162/539 (30%), Gaps = 163/539 (30%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 EG + E + + + G+EE +KN++ DA +I R+CG+C +H ++V Sbjct: 12 EGEATLKIEGDK-KIDFVQIEFWQYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHATV 70 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 + E + AQ R + +HI FY + + Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYI----------TIYPTQIKDKEYL 120 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 K V K +KI +A G + H + +P Sbjct: 121 FKAV------------KFSSKISKAIA------ILAGQFPHNSYMVP------------- 149 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 GGV + L + +I ++ D Sbjct: 150 ---------------------------GGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMD- 181 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 E + D P+ GK +L + E NG + Sbjct: 182 -ENLTSHDLERFFENLPK--DIGKSLNKFLVLGESNIFKSNGDY---------------- 222 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 K ++E S K+ + + Sbjct: 223 -----------KNVKEERNKSLSKN-----------------------------ALYNNE 242 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 EVGPLA M++ + + ++ S R+ R Sbjct: 243 YYEVGPLARMIINKNKNIKKIYDIYSD-------------------SIYTRMCARIYEPL 283 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGII 493 L D ++ + S + +F+KPN+ K + +EAPRG L H + IK+ I Sbjct: 284 LLLDYIEQKLSEV-----DLCEPSFLKPNVR---NGKAIVAVEAPRGSLIHEISIKNEKI 335 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 Y VVP+ +N + ++ P + +L+ +A + FD C C H Sbjct: 336 DYYNIVVPTQFNLA-SSTKENPSPAQAALMNEDIAYVDS------VFRCFDICAVCMSH 387 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 178/558 (31%), Gaps = 138/558 (24%) Query: 1 MSQR--ITIDPVTRIEGHLRIDCEIENGVVSKAWASGT-MWRGMEEIVKNRDPRDAWMIV 57 MS+ I + + R+EG +D I++G + K R E+ ++ R+P V Sbjct: 1 MSRETVIEVPILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAV 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RICG+C + RA +SA +I +R ++ H +H + L+A D++ Sbjct: 61 ARICGICPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFL 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 S ++ K++V Sbjct: 121 GYRS-------------------------AIEMAKDYPKEVVRG---------------- 139 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 ++ Q N ++ LLGG++ H + VGG + + L Sbjct: 140 -----------------VKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHAL-- 180 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + +K + + D VE V LS P+ K S Sbjct: 181 --IPKLKDALKEAKDVVEWVST-----------------------LSFPDTTIPFKMVSL 215 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 P Y D ITS +++ I E H + P Sbjct: 216 SHPTEYPVFGD----DVITSDGEKF---HISEYDDH-----------FREFHAPQSTALH 257 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 T G+ + +GPL + + +++ Q++ T Sbjct: 258 ST---------TVDGQPILLGPLPRINLN-----------FDKLPKHIQEMAHATGVKWP 297 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 + ++ R + + + N D V + A G +EA Sbjct: 298 SKNMFHSVVARAIEGYWAIERAL----QVCENYSYTDTP-CVDYTVKA---ADAWGAVEA 349 Query: 478 PRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG+ + + D G+ + P++ N D+ ++ G + + L Sbjct: 350 PRGIQIDHIKVNDQGLAEKIRISAPTSQNLP--CIEADLRIALENF-GLDKPEDDIRLHA 406 Query: 537 VRTIHSFDPCMACAVHVV 554 I ++DPC++C+ H + Sbjct: 407 EMVIRNYDPCISCSAHFL 424 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 84/554 (15%), Positives = 164/554 (29%), Gaps = 136/554 (24%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRIC 61 + I ++ + R+EGH I+ +E V +A R E I+ + + I RIC Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 +C D + S Sbjct: 62 SIC-------------------------------------------------PDPYQVAS 72 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + + + + V E + I D++ S L +F K Sbjct: 73 SRAIEKAMGIRVDRQV---------EALRELQLISDVIHSHALHLFFLALPDFLGYKDAI 123 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + AL+ +R N + ++ G+T H GG + L L + Sbjct: 124 GMAAQYPETVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLES 183 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 I + + F PE+ L + + + G Sbjct: 184 SIDGAREAIRVFSSLKM-----------PEYS---------LDDNLYIAVDPGEHYGYSG 223 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 Y+ +D + P+ + D ++ Sbjct: 224 EYLLVSD-GTRHPVEKYMDLTNEVTVE--------------------------------- 249 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 +S K ++ G + G LA +L+ + E Y+ L + Sbjct: 250 HSSAKHSSYKGSSFMTGALARLLLN-------EKRLYGEAKESYESLRDKIDPRNPFSNN 302 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + + + + L+ K VKP +G+ +EAPRG+ Sbjct: 303 M----AQAIELLYSVQRAMDIIDGLLDEGIKDKLMVEVKPRA-----GEGIAVVEAPRGL 353 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTP-VADPNKPLEVVRT 539 L H + D G + V P+ N+ + + ++ ++D L++ Sbjct: 354 LYHHYKLDDNGKVVFANLVTPTAQNAANMDKYLRI-----AVRNLKDLSDDELKLKLEML 408 Query: 540 IHSFDPCMACAVHV 553 + ++DPC++C+VH+ Sbjct: 409 VRAYDPCISCSVHL 422 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 17/225 (7%) Query: 140 WHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQR 199 W + T+++++++ V G+LGIF NGYWG+ KL P NL+A+ HY QALE QR Sbjct: 29 WTRSMHNTSTEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQR 88 Query: 200 DANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYK 259 D +++ + GGK PH Q+L VGGV + I++ + + K ++ F++ Y Sbjct: 89 DLGQMMTIFGGKDPHPQSLVVGGVTSIIDIK-----DPAKRQLFKGLALRVRAFIKGAYM 143 Query: 260 VDTAVIAAFYPEWL--TRGKGAVNYLSVPEFPT---DSKNGSFLFPGGYIENADLSSYRP 314 +++ Y + G G ++L FP D LFPGG + N DL+ Sbjct: 144 PGMYMLSEMYKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDLTKV-- 201 Query: 315 ITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 ++ + E H+WY AP+ P++GTT P S Sbjct: 202 -----TDFDPALVTEDVTHAWYAAPAPEHPYDGTTTPTIQTLSQK 241 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 24/263 (9%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRI 60 + +I ++ +TR+EGH I +++ G + K R E +++ R +A I RI Sbjct: 5 TVKIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHITSRI 64 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H+L+S++AAE AL + +R ++L H++H Y L+A D + + Sbjct: 65 CGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVP 124 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S + T + + + + K+ N + D++ + + G + P Sbjct: 125 SFVPLVKTHNAVVRRAL---------RMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRP 175 Query: 181 PEVNLIAVAHYLQALECQR-DANRVVAL-LGGKTPHI--QNLAVGGVAN----PINLDGL 232 +++ + L+ LE R D +AL + P + VG V++ P+ + + Sbjct: 176 KDLDAM-----LEMLESMRDDMAETLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDV 230 Query: 233 GVLNLERLMYIKSFIDKLSDFVE 255 G + +RL K + ++F++ Sbjct: 231 GSTDGKRLGK-KDYRQATNEFID 252 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 75/369 (20%) Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 AL ++ N V +L G+ H + VGG L + LE L ++ + + Sbjct: 140 ALRMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRPKDLDAM-LEMLESMRDDMAETLAL 198 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 + + D FY E G E+P + G + L Sbjct: 199 AKTLQFPD------FYRETEYVGL----VSDDEEYPLLMGD------VGSTDGKRLGKKD 242 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 + ++ + S K + Sbjct: 243 YRQATNEFIDPR-------------------------------------SSAKFAKWSRD 265 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 + VG LA + + + E+ H+ + + V Sbjct: 266 SYLVGALARFNLNSDKLHPTAKAIAEELGLK-----------PICHNPYLNTVAQVVEIV 314 Query: 434 ELQDILQNQYSALITNIGKGDHTTFV----KPNIPATGEFKGVGFLEAPRGMLSH-WMVI 488 + + L N D V + IP GVG +E PRG+L H ++ Sbjct: 315 HCYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRA-GDGVGAVEVPRGILFHNYVTD 373 Query: 489 KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMA 548 +GII ++P+ N N D+ ++ L++ + ++DPC++ Sbjct: 374 SNGIIEQANCIIPTNQNIA--NIEYDMMKLLPEILDQ--TKEEITLKMEMLVRAYDPCIS 429 Query: 549 CAVHVVDAD 557 C+ H ++ Sbjct: 430 CSAHYLNVK 438 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 18/258 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ + +D + R+EG + +I + V + R E ++ R +A I RI Sbjct: 3 TKTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITSRI 62 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S+V+A E L + V + +R ++ H +H + L A D++ Sbjct: 63 CGICPIAYMMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYD 122 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S + + +G+ K+ N+I L+ + G KLP Sbjct: 123 SVIAMAGDYPDLVQRGL---------RLKKIGNQIISLIGGRAIHPINVRVGGF--YKLP 171 Query: 181 PEVNLIAVAHYLQ-ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 +L ++ L+ A+ + R VA + A ++ +N R Sbjct: 172 SRQDLHSLVADLEWAVAAAAETVRWVAAFP-----FPDFAPDYEFVALHHGEEYPMNQGR 226 Query: 240 LMYIKSFIDKLSDFVEQV 257 L+ K + F +Q+ Sbjct: 227 LVSNKGLDIPIHQFYDQI 244 Score = 91.8 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 114/365 (31%), Gaps = 78/365 (21%) Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 L ++ N++++L+GG+ H N+ VGG + L L + L + + + + Sbjct: 138 GLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSL-VADLEWAVAAAAETVRW 196 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 V D F P++ EF + G + ++ Sbjct: 197 VAAFPFPD------FAPDY--------------EFVALHHGEEYPMNQGRLV-SNKGLDI 235 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 PI D I+E + + + G Y Sbjct: 236 PIHQFYD-----QIEEQHRP--------------HSTALQAQLKERGNY----------- 265 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 +GPLA + TQ + + + II R++ Sbjct: 266 --FLGPLARFNLNFEQLTPRTQ-----------AVAQSVGMTPLCRNPFKSIIARSLEVM 312 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GI 492 + + I + V + A G G EAPRG L H+ I G Sbjct: 313 FAAEEALRLIDSYI-----PPAQSVVDYTVRA---GCGHGCTEAPRGSLYHYYQIDQQGD 364 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 I Q P+ N D+ + + + P + + + I ++DPC++C+ H Sbjct: 365 ILAAQIAPPTAQNQS--TIEQDLWQFVEEHIDLP--ENQLRSQCEQVIRNYDPCISCSTH 420 Query: 553 VVDAD 557 + + Sbjct: 421 FLKLE 425 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 34/259 (13%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS+RI I P +R EGH + E+++ G+V+K + S T RG+E+IV + P A +IVQ Sbjct: 1 MSERIVISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVC H L+SV A + +L+I+VP + +R + LAAH + H +H + L A D+V Sbjct: 61 RICGVCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHF-LIAPDFV- 118 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + +NS E K + D+VA + Sbjct: 119 ---------------PENLMADAINSVSEIRKNAQYVVDMVAGEGIH------------- 150 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 P +V + +A + L +R R+ L H++ L +G + + GLGV N Sbjct: 151 -PSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE-LMIGLIEDKGLPKGLGVHNQP 208 Query: 239 RLMYIKSFIDKLSDFVEQV 257 L + + D+ +++ Sbjct: 209 TLASHQIYGDRTKFDLDRF 227 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 10/187 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGT-MWRGMEEIVKNRDPRDAWMIVQRI 60 + R+T+ + R+EG R+ + +G V A + R E ++ RD R+ I RI Sbjct: 9 TTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPPDITSRI 68 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S+ A E A + +R ++ H +H Y L A D++ + Sbjct: 69 CGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGAS 128 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A++ ++ +G++ K N I D++ + G P Sbjct: 129 DAIELARIARPDVERGLT---------LKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTP 179 Query: 181 PEVNLIA 187 E+ +A Sbjct: 180 SELAPLA 186 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 67/402 (16%), Positives = 123/402 (30%), Gaps = 79/402 (19%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + +AS L I+ E+ IA + L ++ N ++ ++GG++ H Sbjct: 107 EWIASHTLHIYLLHAPDFLGASDAIELARIARPDVERGLTLKKAGNAILDMIGGRSIHPV 166 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 N+ +GG L L + + + + +V D V Sbjct: 167 NVRLGGFYRTPTPSELAPLAEQLRWALDDALATVQ-WVSHFEIPDAEVDT---------- 215 Query: 277 KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 E ++ G + IE+ L++ + +E+ + H Sbjct: 216 ----------ELLALAQPGRY-----AIEDGVLTTTSGSSFAPEEFCDHVAERQVPH--- 257 Query: 337 KDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 S G+ GPLA + A E+ + Sbjct: 258 --------------------------STALHAHLDGQAYLTGPLARYSLHSADLSETARQ 291 Query: 397 KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHT 456 E T+ S + R + E +++ Y + Sbjct: 292 AATEA-------GLGTVCRNPFQSIVVRAVETVFAVDEALRLIREYYR---------PES 335 Query: 457 TFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDV 515 +V + A G G EAPRG+L H + +G I + P++ N + Sbjct: 336 PYVDMSPRA---ATGYGVSEAPRGVLYHLYQLDSEGRILRATIIPPTSQNQAAIENDLRN 392 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDAD 557 + D RTI ++DPC++CA H +D Sbjct: 393 TLAA----NLTLTDAELTELCERTIRNYDPCISCATHFLDVT 430 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 74/186 (39%), Gaps = 10/186 (5%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGT-MWRGMEEIVKNRDPRDAWMIVQRIC 61 + +T+ +TR+EG + + +GVV + R E ++ R + I R+C Sbjct: 6 RTLTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDITARVC 65 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C + +S+ A E A + + +R ++ H H +H Y L A D++ Sbjct: 66 GICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPD 125 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A+ + +G++ K N++ + + + G ++ Sbjct: 126 AISFAKDHREFLERGLA---------LKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRD 176 Query: 182 EVNLIA 187 E+ +A Sbjct: 177 ELGPLA 182 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 66/362 (18%), Positives = 115/362 (31%), Gaps = 79/362 (21%) Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 L ++ NR++ +GG+ H N+ +GG + D LG L E ++ +D Sbjct: 140 GLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEE----LRRALDDALFT 195 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 + V + D + + EF ++ + G I Sbjct: 196 LRSVAEFDFPDVEFDH-----------------EFLALTQPDRYAIEDGAI--------- 229 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 + S + + E + +P +S T G+ Sbjct: 230 -VRSAGPAFPVADFSEHVR--------------EMQVP----------HSTALHATLDGE 264 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 GPLA + AA + ++ AQ + I+ R V Sbjct: 265 RYLTGPLARYSLSSAALSPTA-----------RQAAAQAGLGAQCRNPFRSIVVRAVEVV 313 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGI 492 + I + ++PA G G EAPRG+L H I DG+ Sbjct: 314 Y-------AIEEALRIIEDYERPARPFVDVPARA-GVGHGVSEAPRGLLYHRYEIGDDGL 365 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 +S V P+ N ++G + D R+I + DPC++C+ H Sbjct: 366 VSAATMVPPTAQNQA--AIEYEMGRLVAG--NLTLDDAELTSLCERSIRNHDPCISCSAH 421 Query: 553 VV 554 + Sbjct: 422 FL 423 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 13/196 (6%) Query: 1 MSQR-ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQ 58 M+ R I +D ++R+EG +D + NG + + R + + R R+ I Sbjct: 1 MTNRSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITA 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C ++ ++S+ A E A +++V + +R + + H++H + L+A D++ Sbjct: 61 RICGICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLG 120 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 S + E+ + + ++ N I L+ ++ G Sbjct: 121 YESVISMAEDFPDEVKLAL---------DLKRLGNDITALIGGREVHPVTPRVGGFSD-- 169 Query: 179 LPPEVNLIAVAHYLQA 194 LP + L A L+A Sbjct: 170 LPSQEALKQAAERLEA 185 Score = 88.7 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 112/362 (30%), Gaps = 79/362 (21%) Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 AL+ +R N + AL+GG+ H VGG ++ + + + + ++ Sbjct: 138 ALDLKRLGNDITALIGGREVHPVTPRVGGFSDLPS---------------QEALKQAAER 182 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 +E + A LSVP+ D + + Y N R Sbjct: 183 LEAALEGGMAAAKLVGG------------LSVPDMSWDFTSVALSDKKEYAVNGG----R 226 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 ++ + + +E + + G Sbjct: 227 LVSDNGLDIDPADYREFLHEAHVSPSHALH------------------------SSLSGN 262 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 + VGPLA + + + + HS R+ VH Sbjct: 263 SFLVGPLARVNLNFDRLSGKAKEAAALTGVSF-------PSKNPFHSVDARV-AELVHSI 314 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GI 492 E + + + + N G EAPRG+LSH + G+ Sbjct: 315 EESLEIIDALGKPVP-----------EKNGYIVRPGCGAAITEAPRGILSHSYCFNELGV 363 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 + V P++ N +N + + + ++D L+ I ++DPC +C+VH Sbjct: 364 VEEADIVAPTSRNV--KNMEEGLRRFIP--EHLDLSDEELTLKCEMYIRNYDPCFSCSVH 419 Query: 553 VV 554 + Sbjct: 420 FL 421 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 17/211 (8%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ I P+TR+EG R+ +I +G V +A R E ++ R + I RI Sbjct: 4 TRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITARI 63 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S++ A E ++ V +R +I H +H + L D++ Sbjct: 64 CGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYD 123 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIF---ANGYWGHPAM 177 SAL + + + G++ K N + ++ + G++ P Sbjct: 124 SALHLAQDQPALVKLGLT---------LKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRR 174 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALL 208 + E+ V QA + RD R A L Sbjct: 175 RDLTEL----VGQLEQARDIARDTARFTAAL 201 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 65/366 (17%), Positives = 119/366 (32%), Gaps = 86/366 (23%) Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 L ++ N ++ ++GG+ H N VGG + Sbjct: 139 GLTLKKAGNTLMTVIGGRAIHPVNARVGG------------------------------W 168 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF---PGGY-IENADL 309 + D + + + + + +FP D + +F+ PG Y +E + Sbjct: 169 YRAPRRRDLTELVGQLEQARDIARDTARFTAALDFPEDELHQTFVALHQPGEYPVERGRI 228 Query: 310 SSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPT 369 +S + +Y +E PW + +S + + Sbjct: 229 ASTAGLDIAPADYDRHFTEEQV------------PWS------------NALHSTLAA-- 262 Query: 370 FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 G + GPLA + + + E + E S + R I Sbjct: 263 --GGSYLTGPLARFALGAERLAPAARETAAE-------IGLRPPERNPYRSIIVRCIEMV 313 Query: 430 VHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK 489 E I+ + D + P G G EAPRG+L H I Sbjct: 314 HAADEALRIIADYTE--------PDPSALEAPP----RAGTGYGVTEAPRGLLYHRYTID 361 Query: 490 -DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMA 548 +G I + + V P+ N P +D+ + + +++P L R I ++DPC++ Sbjct: 362 HNGTILDAKIVPPTAQNQRP--IEEDLRGVVERFMN--LSEPELALRCERAIRNYDPCIS 417 Query: 549 CAVHVV 554 CA H + Sbjct: 418 CATHFL 423 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 10/173 (5%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++I ++R+EG I E+E G V R E + R + I RICG+ Sbjct: 10 LSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPPDITARICGI 69 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C + +SS A E N+ +P N +R ++ H +H + L A ++ S + Sbjct: 70 CPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAPGFLRYPSLM 129 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + +E+ G+ + K N + + ++ G + Sbjct: 130 EMAKDYPTEVGWGL---------QMKKAGNALIRTLGGREIHPVNVRVGGFYS 173 Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 77/207 (37%), Gaps = 26/207 (12%) Query: 352 AYDGWSDDGKYSWVKSPTFYGK---TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 ++ + + + + + + G GPLA + ++ L + Y Sbjct: 243 QFENFFKEEQTDYSNALRWLGNDSAPCVAGPLARFNLNYYLLPPFLRDILKQTTLNY--- 299 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 + I+ R V ++ LI + A+ Sbjct: 300 --------PCLNPFQSILVRLVEVAY----AFDEAIRLIETYEPEGEPCCIDFKPCAS-- 345 Query: 469 FKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 G G EAPRG+L H + + GII+ + V P+ +N + +D+ + +S Sbjct: 346 -LGQGISEAPRGILYHRYHVDEQGIITGAKIVPPTCFNLV--SAEEDLKAWIES--HPHD 400 Query: 528 ADPNKPLEVVRTIHSFDPCMACAVHVV 554 + N + + + ++DPC++CA H++ Sbjct: 401 SIENLSADCEQIVRNYDPCISCATHLI 427 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + ITID + R+EGH I + E G+ S + R E ++K + RDA IV R+C Sbjct: 2 ETITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 +C+ H L+SV A ESAL I V Q R ++ H +H + L+A D++ S Sbjct: 62 SICSAGHTLASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNAS 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI 166 LQ ++ KG+ E +V N ++++V + Sbjct: 122 ILQMASHFPEQVQKGL---------EIKRVGNLVQEVVGGRAIHP 157 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQR 59 + +RI I+ +T+IEGH + EIE+ + + R E + + + + R Sbjct: 2 VERRIRIEEITKIEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGR 61 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+CT H ++SVRA E AL I++ + +R ++L + HI+H Y L+ D+ ++ Sbjct: 62 ICGICTVAHEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNV 121 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI 166 S ++ + + K E + N + +L+ + Sbjct: 122 ESIIELANKNVNLVKKAF---------ELKEASNYMTELIGGRAVQP 159 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 21/232 (9%) Query: 330 SAKHSWYKDEAPQ-APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVE--VGPLANMLVK 386 S ++ Y+ E+ A W+G +IP Y G + S + P Y + + V ++ Sbjct: 199 SLEYPKYERESEYVALWDGHSIPLYKG--EIATLSSIFDPHQYQEHIREWVVEYSSAKHS 256 Query: 387 LAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSAL 446 L GR+ L + I + L E+A+ + R + L L+N + AL Sbjct: 257 LIEGRDYMVGALAR-LNINRNLREEARELAERYGV--RFPSNRIAWINLAQALENVHFAL 313 Query: 447 -----ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVP 501 N+ + D P + +GVG +EAPRG+L H IK+G + + P Sbjct: 314 EAMEIAENLKEYDPHKINIPRV----SGEGVGVIEAPRGLLIHHYKIKNGKCTYVNIITP 369 Query: 502 STWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV 553 + N+ N + Y +V D +E + I ++DPC++C+VHV Sbjct: 370 TAMNT--ENIERILKGYISQIV--SKNDEYIKMEAEKIIRAYDPCISCSVHV 417 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 10/174 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQR 59 MS I I P+TR+EGH + ++ V + + R E +++ + R+ I+ R Sbjct: 1 MSNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 IC +C+T H ++++ A E A I V R +I+ H +H + L+ D + Sbjct: 61 ICSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFNA 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + G+ V N I++ + + G Sbjct: 121 AGFADLAKLAPDLLKLGL---------RIKAVGNDIQETIGGRLIHPINVKIGG 165 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 23/267 (8%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 I +D TR+EG + + IENG V A R E + R D + RIC + Sbjct: 6 IELDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAI 65 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H+++SVRA E+AL I+V + + +R + L H +H Y L+ D A+ Sbjct: 66 CYASHSIASVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAI 125 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + +G++ + N I++ +A ++ G P E Sbjct: 126 SMVSKYGELIKEGLT---------IKALGNMIRETIAGREIHGINVKPGGFGRY--PSER 174 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 L +A + +AL R A R+V + + P + V V + + +R+ Y Sbjct: 175 ELEKIAKHARALV--RFARRIVNIFATQEPRGAKIEVPMVTSEYLWGDELIAGNDRIQY- 231 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYP 270 + +E+V + ++Y Sbjct: 232 --------EDIEEVPVPYSFAKHSYYK 250 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 91/200 (45%), Gaps = 32/200 (16%) Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS+ K + GK + VG LA +L+K + + L+ + +K+ + +++ Sbjct: 241 YSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLD---SYKEKIKSGHV----IYNN 293 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 L + I V+ E+ + + I +G + +P+ +G+G++EAPRG+ Sbjct: 294 LAQAI-ELVYALEVASKIAEEL------ISEGIEKSTCEPS---EKSGEGIGYVEAPRGV 343 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG------TPVADPNKPLE 535 L H I++ I + P+ +N G E+SL+ ++ + Sbjct: 344 LVHHYRIENERIVWSNTITPTAFNQ---------GMMEKSLLEDARNMFGKESETTLKSK 394 Query: 536 VVRTIHSFDPCMACAVHVVD 555 + + +FDPC++C+VHVV Sbjct: 395 LEEVVRAFDPCISCSVHVVR 414 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 21/254 (8%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 I I+ TR+EG+ + IENG V R E + R D + RIC + Sbjct: 4 IEIEAFTRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAI 63 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H+++SV E AL ++VP +R + L H +H Y L A D A+ Sbjct: 64 CYLSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAI 123 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLG---IFANGYWGHPAMKLP 180 + + +G++ N I++L+ ++ I G+ +P ++ Sbjct: 124 RMASKHGEVVKEGIT---------IKAFGNYIRELLGGREIHGINIKPGGFGRYPTIE-- 172 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINL-DGLGVLNLER 239 L + +AL R A RVV + + P + N D L + E+ Sbjct: 173 ---ELEQIESQCEAL--LRPARRVVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEK 227 Query: 240 LMYIKSFIDKLSDF 253 Y++ +K + Sbjct: 228 FDYLEHIEEKTLPY 241 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 117/322 (36%), Gaps = 42/322 (13%) Query: 255 EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN--GSFLFPGGYIENADLSSY 312 + D +A+ + E + G + + + G + PGG+ + Sbjct: 115 DLFGYADAIRMASKHGEVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEEL 174 Query: 313 RPITSHSD----------------EYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 I S + E L +Q + Y +G + Sbjct: 175 EQIESQCEALLRPARRVVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHI 234 Query: 357 SDDGK-YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + YS+ K + G VG L +++K ++ E +KL + Sbjct: 235 EEKTLPYSFAKQSRYKGNIFMVGALPRVMLKHDMLTPMAKHFYEE---HKEKLASGYVSF 291 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 + + + + + L+ +G++ P P E +G+G++ Sbjct: 292 N--------NLAQAIELLYALEKAKEVAKTLLDKGIEGENV----PIEPQ--EGEGIGYV 337 Query: 476 EAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 EAPRG+L H I + G I+ + P+ +N G ++ YE++ +D L Sbjct: 338 EAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIM----ELSLYEEARKRYGSSDETTFL 393 Query: 535 E-VVRTIHSFDPCMACAVHVVD 555 + + T+ +FDPC++C+VH+V Sbjct: 394 QKLEETVRAFDPCISCSVHIVR 415 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 10/169 (5%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 + + R+EG +D E+ +G + R E+ ++ R+ ++ +V RICG+C Sbjct: 11 VPVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGICP 70 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 + +S+V A E + +R + H +H + L+A D++ +SA + Sbjct: 71 VAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEM 130 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH 174 + +G++ + N+I + G Sbjct: 131 ARAHPDIVRRGLA---------LQALGNEIIRFFGGRSVHPVGARVGGF 170 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 6/151 (3%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M RI I P +R EGH + E+++ G+V+K + S T RG+E++V ++P A ++ Q Sbjct: 1 MKDRIVISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV- 117 RICGVC H L+SV A + +L+I+VP + +R LAAH + +H + L A D+V Sbjct: 61 RICGVCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHF-LIAPDFVP 119 Query: 118 --DITSALQADPTKASEMLKGVSTWHLNSPE 146 D T+A+++ + V Sbjct: 120 EEDFTTAVKSVSAVRKNVQYVVDMLAGEGIH 150 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 88/211 (41%), Gaps = 16/211 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRI 60 S+ +++ +TR+EG + I + V++A S R E +++ R + + RI Sbjct: 8 SRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTSRI 67 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + LS+ RA E A +DV +R ++ +H Y L A D++ Sbjct: 68 CGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLGHD 127 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + ++ + + +G+ + N + +L+ + + G + P Sbjct: 128 DVIGMSRSEPAHVRRGL---------RLKQTGNAVVELLGGRAVHPVSVRLGGFH--RTP 176 Query: 181 PEVNLIAVAHYLQ-ALECQRDANRVVALLGG 210 L +A L+ AL+ DA V + G Sbjct: 177 TRTELRPLAEGLRVALD---DAWDTVQWVAG 204 Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 114/373 (30%), Gaps = 62/373 (16%) Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 AH + L ++ N VV LLGG+ H ++ +GG L L ++ +D Sbjct: 138 AHVRRGLRLKQTGNAVVELLGGRAVHPVSVRLGGFHRTPTRTELRPLAEG----LRVALD 193 Query: 249 KLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 D V+ V D + ++ G++ G Sbjct: 194 DAWDTVQWVAGFDFPEAECE-----------------ADLLALAEPGTYAIESGVPTVVP 236 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSP 368 + P S + E T +P +S Sbjct: 237 YDATHPAWSFPLRTFCDHVTE------------------TQVP----------HSTALHS 268 Query: 369 TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIV---AIYQKLTGNTLEVAQLHSTLGRI 425 G+ G LA V + ++ T + + I Sbjct: 269 RLDGRRHLTGSLARYAVSGHLLSPTALEAAASAGLDDPPLREGRDGTGQGTVCRNPFRSI 328 Query: 426 IGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHW 485 + R V + + I + + +PA G G EAPRG+L H Sbjct: 329 LVRAVE-------VFYAVEEALRIITEYERPASPYVPVPARS-GVGHGATEAPRGLLYHR 380 Query: 486 MV-IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 ++G +++ + + P+ N G + + +L ++ R I + D Sbjct: 381 YAFDREGRVTDARIIPPTAQNQGAIEEDLRRS-VQAALDRGQDSEAELTRLCERVIRNHD 439 Query: 545 PCMACAVHVVDAD 557 PC++C+ H +D + Sbjct: 440 PCISCSAHFLDLN 452 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 1/141 (0%) Query: 5 ITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D + R+EG ++ + ++GV R E I + +A + RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSF 67 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ H L++V AAE A+ +V Q +R ++ H +H Y L D++ ++ L Sbjct: 68 CSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPL 127 Query: 124 QADPTKASEMLKGVSTWHLNS 144 + E+ + +L S Sbjct: 128 KMLDKYKKEINIALDLKNLGS 148 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 110/297 (37%), Gaps = 23/297 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D V RI G ++ E+GVV A T RG E++V ++P A V RICG+ Sbjct: 7 ITLDKVCRIAGEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICGL 66 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H +++ A E A+ + P N + +R + + H + + + A D + Sbjct: 67 CHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHAL-LFLMVAGDLIKE---- 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 K +++L + +H + K+ G+ + W Sbjct: 122 ----EKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFK 177 Query: 184 NLIAVAHYLQALECQRDANRVVA--LLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 +L A + L D +A L K P + + N++ V ++ Sbjct: 178 DLTASWEAAEELLIDEDIQTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVP--- 234 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 +F ++ ++ + +FY ++ EF +S G L Sbjct: 235 --------YYEFRKEEAARESTTLVSFYDGEKVETGPRARMITYREFRDESLYGLHL 283 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 69/395 (17%), Positives = 131/395 (33%), Gaps = 66/395 (16%) Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 +P + + + + H + + + + + A+G + + L Sbjct: 51 KNPLFAVEAVMRICGLCHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHALL 110 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI----AAFYPEWLTRGKGAVNYLSVPEF 288 ++ L+ + D L ++ K+ ++ AA +P LT G LSVP++ Sbjct: 111 FLMVAGDLIKEEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGG----MLSVPKW 166 Query: 289 -PTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS----WYKDEAPQA 343 ++ F E A+ ++ + K+ +Y D Sbjct: 167 SVFNNLKARFKDLTASWEAAEELLIDEDIQTEIADELREAKRPFKYLASGFFYGDRYNIE 226 Query: 344 PWEGTTIPAYDGWSDDG-KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIV 402 + +++P Y+ ++ + S + G+ VE GP A M + R+ Sbjct: 227 WDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARM-ITYREFRDE--------- 276 Query: 403 AIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSAL-ITNIGKGDHTTFVKP 461 S G + R L + I + TF Sbjct: 277 -----------------SLYGLHLARIEDTRLAIQRLGEILDEIRIEEPFRTGDITFRP- 318 Query: 462 NIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 KGVG EAPRG L H++ + ++G + + VVP+ +N + E+ Sbjct: 319 -------GKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFN---------IPVMEE 362 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 G V + +DPC+ C HVV Sbjct: 363 MAKGLSVKA------AEAVMRLYDPCIPCTTHVVR 391 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQR 59 MS+ IT++ V RI G ++ ENG V A T RG E++V ++P A V R Sbjct: 1 MSE-ITLNKVCRIAGEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 ICG+C +H ++ A E+A+ I P N +R + + H++ F ++ Sbjct: 60 ICGLCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAG 113 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 135/398 (33%), Gaps = 65/398 (16%) Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 +P + + + + H + + ++ + + A+G V + Sbjct: 48 KNPLFAVEAVMRICGLCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLE 107 Query: 233 GVLNLERLM---YIKSFIDKLSDFVEQVYKVDTAVIAAF-YPEWLTRGKGAVNYLSVPEF 288 ++ L+ + + +L DF ++ + A +P LT G SVP++ Sbjct: 108 FLMVAGDLLIEEKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGG----MFSVPKW 163 Query: 289 PTDSKNGSFLFP-GGYIENAD-LSSYRPITSHSDEYLIKGIQES---AKHSWYKDEAPQA 343 + + L G E L + I + + L + E+ +Y D Sbjct: 164 SVFNNLKARLPKLTGQWEEIAHLLTDEDIQTEVADELREKKAENNYLVSSLFYGDRFNIN 223 Query: 344 PWEGTTIPAYDGWSDD--GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 T+P Y+ D+ K S + G+ VE GP A M V Sbjct: 224 AERIETMPYYEYRKDNPHSKESTTLIAFYGGEKVEAGPRARMKV---------------- 267 Query: 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKP 461 Y++ T S G R L+ ++ K D F Sbjct: 268 ---YREFTD--------SSLYGLHTARVQDTTLALIRLEEILDSI-----KMDEP-FRTK 310 Query: 462 NIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 NI G KGVG EAPRG L H + + D G + + + +VP+ +N + E+ Sbjct: 311 NI-VFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFN---------IPVMEE 360 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADG 558 G V + +DPC+ C HVV G Sbjct: 361 MAKGLSVKA------AEAVMRLYDPCIPCTTHVVRLGG 392 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 10/200 (5%) Query: 17 LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVR 74 + ++ V + + RG+E++ ++R I +RICG+C H+ + + Sbjct: 194 GQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICGYAHSCAYCQ 253 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF---YQLSALDW--VDITSALQADPTK 129 A E AL I+VP A YIR ++L H H+++ L+ DW + A + Sbjct: 254 AVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWGFMAFFKAREKVMYM 313 Query: 130 ASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 A + G T+ +N V+ I + A L I + A+ V+ Sbjct: 314 AELLTGGRKTYGMNVVGG---VRRDITEDRAKKALEILKEVEKEYKAVLDAVLSTSTLVS 370 Query: 190 HYLQALECQRDANRVVALLG 209 RD R V+++G Sbjct: 371 RAKDVGVLPRDVARKVSVVG 390 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 32/191 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R+ V + L R+ R E Sbjct: 389 VGPVARGSSIKRDTRKDHPYAAYSEVDFKVPVHSEG-------DVLARLSVRAEETFETI 441 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISN 495 I++ + + + + +G+G++EAPRG H+++ + Sbjct: 442 SIIRQVLENMPGGPIQAEVKEYRPY-------ARGLGYVEAPRGEDVHFVITGPHSKVYR 494 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHV 553 ++ V ST+N+ P G +L P+ I S DPC +C V V Sbjct: 495 WR-VRASTYNNWPAIPYMCRG---YTLADLPL-----------IIGSIDPCYSCTERVIV 539 Query: 554 VDADGNEVVSV 564 VD Sbjct: 540 VDVKSGRTRVF 550 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQ 58 ++ RI I P TR EGH ++ E+ E G+V+KA+ + T RG E ++K + A + V Sbjct: 6 VTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVM 65 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHT 100 RICG+C TTH ++S A E+A++ +VP + +R ++ + Sbjct: 66 RICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNR 107 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 127/394 (32%), Gaps = 107/394 (27%) Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 L P+ + + ++ VV ++GG+ H N+ +GG+ I L Sbjct: 123 LKPDETDLKIELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLY-- 180 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + + Y+ D + Y E + R YL P G+ Sbjct: 181 --------------YALRQYEKDAYELYEKYTELIER------YLEEIGIP---DLGAHE 217 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 +P YI A H+ Y D + T IPA + D Sbjct: 218 YP--YI--------------------------ATHTTYGDRYAINWDDVTEIPAQRYYDD 249 Query: 359 D--GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 + + + ++ P + G E GP A M+ Sbjct: 250 EEAKQTTTIQIPLYAGVPAEGGPRARMV--------------------------KFGNFR 283 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 + S + I R L N + + G+G E Sbjct: 284 EGGSAMDINIARAQENLGAVYRALEILDELDLNGKTRAEVEY--------KDGFGIGVHE 335 Query: 477 APRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 APR +H + KDG I +Y+ + STWN E+++ G P + E Sbjct: 336 APRATNTHMAEVGKDGKIKSYRIIAASTWNF---------PIVEKAIEGYP----QQYAE 382 Query: 536 VVRTIHSFDPCMACAVHVV--DADGNEVVSVKVL 567 V + ++D C +CA HV+ D + E++ V+ + Sbjct: 383 V--IMRAYDICASCATHVIVKDEETKEIIEVRKM 414 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHAL 70 +E ++ ++ + RG+E+I + R I +RICG+C TH+ Sbjct: 208 LEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICGCTHST 267 Query: 71 SSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALDW 116 + +A E+A I+VP A+YIR I+L H H+++F L D+ Sbjct: 268 AYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDY 316 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 35/193 (18%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GPL G + + K + V + L R + R E Sbjct: 408 GPLGR-------GSGRDFDVRRDHPYAAYKYLDFKVPVYKEGDVLARALVRIEEVFESIW 460 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNY 496 I++ + G IP E +G EAPRG H+++ ++ + Y Sbjct: 461 IIEQALDQM-----PGGDILAEYKEIPPYSEA--IGMTEAPRGENIHYVMTGENNKVYRY 513 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVV 554 +A + +++ + G +AD PL + S DPC +C V VV Sbjct: 514 RARAAT---------YNNLPAVPDMMRGYTIADA--PL----IVASIDPCYSCTERVQVV 558 Query: 555 DADGNEVVSVKVL 567 D + V+VL Sbjct: 559 DVESG---KVRVL 568 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 17 LRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 L + IEN V +A G + RG+E + + RD IV+R+CG+C+ HAL Sbjct: 19 LHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVERVCGICSCLHALCYCEG 78 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 E + ++VP A+Y+R I H H H++ + Sbjct: 79 VEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFA 115 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 20 DCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVRAAE 77 + ++ V A + + RGME++ ++R + +RICG+C TH+ + +A E Sbjct: 177 ELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVE 236 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A I VP AQYIR I+L H H++ F Sbjct: 237 DAAGIYVPERAQYIRTIMLEVERIHSHLLWF 267 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 32/189 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A + T + + A Y+ L + V + R + R E Sbjct: 369 VGPMAR------SSGIDTDVRRDHPYAAYKDL-DFKVPVYKEGDVFARFLVRYEEIFESF 421 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 ++++ + + IP G+G EAPRG H + I+ Sbjct: 422 NMIRQALENM-----PPGELINDEYEIPPFK--LGIGVTEAPRGENIHAV------ITWG 468 Query: 497 QAVVPSTWNSGPRNF-NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV-- 553 + ++ W PR +++ L G VAD PL I S DPC +C HV Sbjct: 469 ENMI-YRW--HPRAATYNNLPAVPIMLRGNDVADA--PL----IIASIDPCFSCTDHVSI 519 Query: 554 VDADGNEVV 562 +D++ +++ Sbjct: 520 IDSESGKIL 528 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 12/113 (10%) Query: 2 SQRITIDPVTRIEGHLRID------CEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAW 54 + ++ I PV H+ + +IE + A G + RG+E + + R+P Sbjct: 6 TYKLPIGPV-----HVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQVI 60 Query: 55 MIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVH 107 + +R+CG+C+ +HA++ V+A E A I+VP+ AQYIR+++L H HI+ Sbjct: 61 YLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILW 113 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 93/324 (28%), Gaps = 37/324 (11%) Query: 230 DGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFP 289 D + R YI+S + +L + A + G Sbjct: 84 DAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACYTIGFDSAFHLGM----------ML 133 Query: 290 TDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTT 349 + G N +++ + +++ + + + Y++E Sbjct: 134 REKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHY--YRNEFASFYEAAIN 191 Query: 350 IPAYD-GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIY-QK 407 P D G + ++ + +GP + + I+ + Sbjct: 192 DPVVKARLRDVGVLTTEQAIKY----CALGPTSRG--SGVRADVRWSAPYDAYCDIHVEP 245 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG 467 + R + R + DIL+ L + + Sbjct: 246 VVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLLTVLKKA 305 Query: 468 EFKGVGFLEAPRGMLSHWMVIK--DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 E G G +EAPRG +H + +K + ++ P+ Y ++ Sbjct: 306 EGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPT---------------YSNAVSWP 350 Query: 526 PVADPNKPLEVVRTIHSFDPCMAC 549 + N+ + I+S DPC++C Sbjct: 351 LMFKDNELADAPLIINSIDPCISC 374 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 5 ITIDPV--TRIEGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I I PV T +E H R+ IE+ ++ +A G +RG+E I++ P ++ ++IC Sbjct: 10 IAIGPVHPTMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 G+C+ H +V E +I+VP A+YIR I+ H H++ F Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAF 119 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 28/185 (15%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP A + R+ Q + + + + + R+ R C E Sbjct: 220 GPTARGSGIHSDMRKMGQVPVYDNFEFEEIVFDDG-------DVFSRLAVRFYECFESVK 272 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNY 496 I++ L + + + + EA RG + + + ++G + Sbjct: 273 IIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYN-----EAQRGQVYYSYGLDENGRVRQV 327 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 + P+ N E L G V+D I S DPC C ++ Sbjct: 328 KIRTPTATNLAC---------MEAILPGHHVSDAEL------IIASCDPCFTCTDRMIVV 372 Query: 557 DGNEV 561 N++ Sbjct: 373 KENKI 377 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 20 DCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVRAAE 77 + ++ + A + + RGME++ ++R + +RICG+C TH+ + +A E Sbjct: 177 ELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVE 236 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A NI VP A+YIR I+L H H++ F Sbjct: 237 DATNIYVPERARYIRTIMLEVERLHSHLLWF 267 Score = 54.8 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 32/189 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A A T + + A Y L + V + L R + R + Sbjct: 369 VGPVAR------ASGIDTDVRRDHPYAAYGDL-DFEVPVYKGEDVLSRFLVRYDETFQSF 421 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 +++ + + + G G+G EAPRG H +VI G Y Sbjct: 422 SMIRQALDNM-------PEGELINEDYEIPGFKLGLGVTEAPRGEDVH-VVITWGENKVY 473 Query: 497 QAVVPSTWNSGPRNF-NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV-- 553 + W PR +++ L G +AD I S DPC +C HV Sbjct: 474 R------W--HPRASTYNNLPAVPVMLRGNDIADAPI------IIASIDPCFSCTDHVSI 519 Query: 554 VDADGNEVV 562 +D++ V+ Sbjct: 520 IDSENGRVL 528 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ ++ A + G RG+E +++ A M+ ++ICG+C+ +H +SVR A Sbjct: 30 RVRFFVEDEIIKDAEITIGVNHRGIERVMEGLPVEKANMLTEKICGICSNSHTWNSVRTA 89 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 E L ++VP A YIR I+ H H+++ Sbjct: 90 EKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGH 123 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 25/183 (13%) Query: 382 NMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQN 441 + V R + + + +++ R E I++ Sbjct: 221 KLAVSGPTLRATGVKRDLRTDMYEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQ 280 Query: 442 QYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVP 501 L + ++ + ++E PRG L H I+DG + + P Sbjct: 281 AIRDLPEGKITDRSWEMIDTDLIES-------YIEVPRGTLYHSYAIEDGRVRHCIIRTP 333 Query: 502 STWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC---AVHVVDADG 558 S N +G + + + + D + + DPC C A+ V D + Sbjct: 334 SMSN---------IGAMQYACIDNHITDGQ-----LCIVQC-DPCFTCSDRAIEVYDTNY 378 Query: 559 NEV 561 N++ Sbjct: 379 NKL 381 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 17 LRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 L + +E+ + +A A G + RG+E + RD IV+R+CG+C+ HA+ + Sbjct: 19 LHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIVERVCGICSCIHAMCYCQG 78 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 E+ +N++VP A+Y+R I H H H++ + Sbjct: 79 LETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFA 115 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 32/175 (18%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP G Q+ A + +L + + S R R + + Sbjct: 213 VGPTLR-------GSGVAQDARQLGYAAFDELDFEPVTSPEGDS-WARSKVRFMETLQSM 264 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 DI++ S L + + +P + V +E PRG L +++ + Sbjct: 265 DIVRQAISRL--------PDSELAAKVPGKPTGEVVCRVEQPRGELLYYLKGNGSKNMER 316 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + P+ ++ P L G +AD P+ + DPC++C Sbjct: 317 VRIRTPT---------FANIPPLLAMLPGAQLAD--VPIAALTI----DPCISCT 356 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 16 HLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVR 74 H R+ + E +V + RG+E+ + R + +RICG+C H++S Sbjct: 227 HFRLFVKGE-EIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICGICGYQHSVSYAM 285 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A E ++D+P A+YIR ++L H+H++ Sbjct: 286 AVERLADVDIPDRARYIRTLMLELERIHNHLLWV 319 Score = 59.1 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 29/190 (15%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP A + R K A+ + V + L R++ R E Sbjct: 422 GPTARASGRRIDTRLDQATKT----AMAYNEVDFKVPVYKEGDVLARVLVRMDELFESLW 477 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNY 496 I+ LI + GD + P + +GF EA RG + H+++ + + + Sbjct: 478 IV----EQLIDQMPGGD---IMVPIGDLPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRW 530 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVV 554 + P+ +++ + L G VAD PL I S DPC +C V V Sbjct: 531 KVRAPT---------YNNLPAVPEMLKGYHVADA--PL----IIASIDPCYSCTERVQFV 575 Query: 555 DADGNEVVSV 564 D + +V + Sbjct: 576 DVETGKVKVL 585 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 5 ITIDPVT-RIEGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKN-RDPRDAWMIVQRIC 61 I I P +E ++ ++ + + RG+E++ ++ + + + +RIC Sbjct: 164 IPIGPFYPSLEEPAYFRLIVDGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERIC 223 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 G+C H+ + +A E A I++P+ A++IR++ L H H++ + Sbjct: 224 GICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLLWVGLAA 274 Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 44/213 (20%) Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 + D KY GP+A G + + + Sbjct: 362 KYDDAKKYCVC------------GPVAR-------GSGINIDMRTNFPYAAYPMLNIRIP 402 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 + + R I R +I++ ++ NI +G + + P + V + Sbjct: 403 LNKSGDVWARTIVRLEEILISINIIR----QILENIPEGPTSIKISKIEPWK---EAVSY 455 Query: 475 LEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 +EAPRG L H+++ +G + PS N L G +AD P Sbjct: 456 IEAPRGQLFHYVMTGPEGRPYRWSVRAPSYQNY---------QALSVMLKGASIADA--P 504 Query: 534 LEVVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 L I S DPC +C +VD N + Sbjct: 505 L----IIGSIDPCFSCTERYEIVDLKTNSIKVY 533 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 GH R+ + EN ++ + + RGME++ + R + + R+CG+C H+ + Sbjct: 195 GHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYT 253 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 + E+A+ I VP AQ IR I+L H H+++ Sbjct: 254 TSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGL 290 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 32/191 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+ A+G + V L + Q + R+ R Sbjct: 390 VGPMVR-----ASGHARDTRADHPFVGY--GLLPMEVHSEQGCDVISRLKVRINEVYTAL 442 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHW-MVIKDGIISN 495 +++ L + T++ +GF EAPRG HW M + + Sbjct: 443 NMIDYGLDNLPGGPLMVEGFTYIPHRF-------ALGFAEAPRGDDIHWSMTGDNQKLYR 495 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHV 553 ++ + + L G V+D PL I S DPC +C + V Sbjct: 496 WRCRAAT---------YANWPTLRYMLRGNTVSDA--PL----IIGSLDPCYSCTDRMTV 540 Query: 554 VDADGNEVVSV 564 VD + V Sbjct: 541 VDVRKKKSKVV 551 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 GH R+ + E +V + + RGME++ + R + + R+CG+C H+++ Sbjct: 197 GHFRLFVDGEQ-IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 + E+AL I+VP A IR+I+L H H+++ Sbjct: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 Score = 52.1 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 68/203 (33%), Gaps = 34/203 (16%) Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGR 424 + +P +T +G L + + + N ++ G+ R Sbjct: 366 LATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGD---------VFSR 416 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 ++ R + +L+ + + ++ +GF+EAPRG H Sbjct: 417 VMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAF-------ALGFVEAPRGEDVH 469 Query: 485 WMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 W ++ + + ++ + + L G V+D PL I S Sbjct: 470 WSMLGDNQKLFRWRCRAAT---------YANWPVLRYMLRGNTVSDA--PL----IIGSL 514 Query: 544 DPCMACA--VHVVDADGNEVVSV 564 DPC +C V +VD + +V Sbjct: 515 DPCYSCTDRVTLVDVRKRQSKTV 537 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 21 CEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESA 79 ++ + KA+ G + RG+E+ ++R +V+RICG+C+T+HA V A E Sbjct: 172 LVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVERICGICSTSHAWCFVEAVERL 231 Query: 80 LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 LN++VP A Y+R ++ H H + + Sbjct: 232 LNMEVPRRAAYLRTLVAELERIHSHALWLGLVG 264 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 97/329 (29%), Gaps = 51/329 (15%) Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGA-VNYLSV-PEFPTDSKN 294 R Y+++ + +L + + G + + E + + Sbjct: 237 PRRAAYLRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVH 296 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEY--LIKGIQESAKHSWYKDEAPQAPWEGTTIPA 352 SF+ GG + + R ++ + + + + ES +S Sbjct: 297 KSFVTIGGVRRDVPDALLRRVSERVETFRREFESLLESLSYS---------------EEI 341 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 G+YS + + VGP V+ AAG ++ A + Sbjct: 342 ISRTKGIGRYSLDDARKY----CAVGP-----VRRAAGDPFDVRRIEPYGAYPEVEFEVP 392 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 L R+ R E I+Q + + KP + E + Sbjct: 393 TSNEGDVYNLIRV--RVKEVVESASIIQQLVEKM-----PSGNPVPPKPFMGTVPEGEAY 445 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +EAPRG L +++ + T N P + + + Sbjct: 446 SRIEAPRGELFYYVKANN------------THN--PYRVKVRTPTLANIQLAAKILEGQT 491 Query: 533 PLEVVRTIHSFDPCMAC--AVHVVDADGN 559 + + S DPC +C V ++D G Sbjct: 492 LSDFPVVVTSIDPCFSCMDRVTIIDLSGK 520 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 111 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 19 IDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAES 78 I E +V+ + G RG+E+ + R +++RICG+C+ TH+ + ++A E Sbjct: 23 ITVTGEK-IVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICSHTHSTAYIQAVEE 81 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 + +P A YIR+++ H H++ Sbjct: 82 IAGLTIPPRANYIRSLVGELERIHSHLLWL 111 Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 32/176 (18%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP L A + ++ A Y L + GR + R E Sbjct: 213 VGP------TLRASNVDRDIRRDDPYAAYGSL-DFRVITDDHCDVYGRTLVRVGELMESF 265 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG--IIS 494 +++ + L +G+ + IPA + EAPRG H++ +G Sbjct: 266 RMIRQILNEL----PEGEVSVKAPRKIPA---GEACSRYEAPRGECFHYIR-ANGTDKPE 317 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + + ++ + + +AD P+ + + DPC +CA Sbjct: 318 RVKVRAST---------FANIQAVAKMMENNNLAD--VPI----IVAAIDPCFSCA 358 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 17 LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 +R++ E+E + K G RG+E + R+ + +RICG+C+ +H + V Sbjct: 21 IRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVIG 80 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 +E AL I+ P AQYIR II H HI+ ++ Sbjct: 81 SEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIA 117 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 22/196 (11%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R+ + + + + + A+ + R + Sbjct: 215 VGPTARAAGLRMDIRQDIPYDAYADIDVKAVVPQDIVGEARGD-AYDVTMVRIYEIEQSL 273 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI--IS 494 DI++ L N E +G+G EAPRG + H+ + Sbjct: 274 DIIEYCIDNLPEGKILAIPNYIALLNKIKKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPA 333 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF-DPCMACA--V 551 ++ + PS +++ + L+G VAD + ++ DPCM C V Sbjct: 334 VWKVIAPS---------YNNINSWGYCLLGAEVADIP-------VVVAYIDPCMCCNDRV 377 Query: 552 HVVDADGNEVVSVKVL 567 VV +++ +L Sbjct: 378 AVVKDSTGKILDYSIL 393 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 18 RIDCEIENGVVSKAWASGTMWRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ CE E ++ + RG+E++ D + +R+CG+C H+ A Sbjct: 193 RLFCEGE-EIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYCMAV 251 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 E A I++P A+YIR+I++ H H++ Sbjct: 252 EDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGL 285 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 52/185 (28%), Gaps = 30/185 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R + R + R Sbjct: 385 VGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGG-------DIWARTLVRVDEVRSSV 437 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISN 495 D+++ +IT + +G+ P +G G EAPRG H++ KD Sbjct: 438 DLIK----QMITKLPEGEIMAGFGPIPAWR---EGYGIAEAPRGECVHYVQTGKDNRPYR 490 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 ++ + + L G + D I S DPC +C V+ Sbjct: 491 WRVRAAT---------YPQLQAVPLMLKGMSIGDFPI------IIGSIDPCFSCTERVLT 535 Query: 556 ADGNE 560 D Sbjct: 536 VDTKS 540 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ +V A + G RG+E I++ A + +++CG+C+ H +S R Sbjct: 37 RVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVG 96 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 E AL I++P A Y+R + H H+++ Sbjct: 97 EGALGIEIPERAVYLRVLAEELERLHSHMLYLGH 130 Score = 55.2 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 22/126 (17%) Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 I+ R E I++ +I N+ KG T ++ + +K ++E PRG+ H Sbjct: 271 ILMRATEIFESTKIIR----QVIKNLPKGPIVT-RDWDLVDSPVYK--SYIEVPRGVCYH 323 Query: 485 WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 ++DG + + PS N +G ++S +G P+ D I S D Sbjct: 324 SYGLEDGKVRHSIIRTPSMSN---------IGAMQESCIGHPIQD------AQLAIVSCD 368 Query: 545 PCMACA 550 PC C Sbjct: 369 PCFTCT 374 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 17 LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 +R++ E+E + + G RG+E + R+ + +RICG+C+ +H + V Sbjct: 21 IRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVVT 80 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 AE AL I+ P AQYIR II H HI+ ++ Sbjct: 81 AEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIA 117 Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 25/178 (14%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R+ + + + + + A+ + R + Sbjct: 215 VGPVARAAGIRMDIRQDMPYDAYADIDVRAVVPQDIVGEAKGD-AYDITMVRIYEIEQSL 273 Query: 437 DILQNQYSALITN--IGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-- 492 DI++ L + ++ + GE +G EAPRG + H++ DG Sbjct: 274 DIIEYCVDNLPEGKILAIPNYPALLAKIRRTKGEA--IGAHEAPRGEVVHYLKF-DGRDG 330 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF-DPCMAC 549 S ++ + PS +++ + L+G VAD + ++ DPCM C Sbjct: 331 PSVWKVIAPS---------YNNINSWAPLLLGAEVADIP-------IVVAYIDPCMCC 372 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Query: 20 DCEIENGVVSKAWASGTM-WRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSVRAAE 77 ++ V G M RG+E++ ++ D M+ +RICG+C H+L+ +A E Sbjct: 189 RLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLAFCQAVE 248 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHF---YQLSALD 115 + + VP A++IR I+L H H + L D Sbjct: 249 NGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFD 289 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 29/175 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A G + + A Y ++ + GR++ R + E Sbjct: 381 VGPVAR------GGGVDIDARRDHPYAAYDRVDFKVITHNTAD-VWGRVVVRMLEVFESI 433 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 +I++ + + D TT + G +EAPRG H+ + D Sbjct: 434 NIIRQCFDKMPQGPLVADITTELP------AGRVGYTSIEAPRGESHHFAITGD------ 481 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL-EVVRTIHSFDPCMACA 550 ++ PR + Y Q+L G P ++ + ++ ++ DPCM+C Sbjct: 482 --------DNRPRRWRARAPTY-QNLQGIPAMIKDQRIADMQISLGGIDPCMSCT 527 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 17 LRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 L +D +++ V + G + RG+E++V+ +D + +RICG+C+ H+L Sbjct: 20 LHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVAERICGICSFGHSLGYAET 79 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 E + ++VP A+Y+R I+ H H++ + Sbjct: 80 VEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAA 116 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 29/175 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R E+ L R+ R + Sbjct: 214 VGPFARASNVKFDCRMLGNGAYGELENFQPILDDEG-------DCYARVRVRCKEVIQSI 266 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 DI+Q + I + G G+ + P+ + LE PRG ++ + Sbjct: 267 DIIQELIAK-IPHDGIGERSKLTPPD-----GAQAANVLEQPRGECYYYARGNGSKNLER 320 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + P++ N + G +AD ++ TI DPC++C Sbjct: 321 MRMRTPTSQNLA---------GLVAACEGAELADVPN---ILLTI---DPCISCT 360 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 21/176 (11%) Query: 390 GRESTQNKLNEIVAIYQKLTGNTLEVAQLHST--LGRIIGRTVHCCELQDILQNQYSALI 447 R Q + E ++ + + + LH L R + R C L + L+ Sbjct: 219 ARPQWQGRCYESSSLTRTCSPLLSALKPLHGNGLLRRTVARLTELCRLFEALR------- 271 Query: 448 TNIGKGDHTTFVKPNIP--ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWN 505 +GD + P A + GVG +EA RG L H + ++ IS+Y + P+ WN Sbjct: 272 ----QGDDGALLAALQPFSAAQDGMGVGAVEAARGRLLHRVSLEGQQISHYAILAPTEWN 327 Query: 506 SGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEV 561 P+ G Q L G L+ I S DPC+ A+ VV+AD E+ Sbjct: 328 FHPQ------GVVAQGLAGLQGDRQAVLLQAHHVIESIDPCVGYALTVVEADEEEL 377 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 17/260 (6%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 EG I+ ++E +V A G + R +E+ R +V+R CG+C+ H+ + Sbjct: 16 EGE-YIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLVERTCGICSFHHSWAY 74 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVH---------FYQLSALDWVDITSAL 123 A E A ++VP A+YIR + H H+++ F L W + + Sbjct: 75 CLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFMFTWSGREAVM 134 Query: 124 QA-DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS-GQLGIFANGYWGHPAMKLPP 181 + + + ++T + + ++IK + + LG+ W A L Sbjct: 135 DMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDTWSKDASILAR 194 Query: 182 EVNLIAV----AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 N+ V AH L + + + L P+ + ++ + Sbjct: 195 TKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLVVLDDGDVWSRTF 254 Query: 238 ERLMYIKSFIDKLSDFVEQV 257 R++ + I + ++++ Sbjct: 255 VRVLEVLESIKIIRQVLDKM 274 Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 31/175 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R++ + L L V R R + E Sbjct: 212 VGPTARGSGIREDLRKTAPYAVY-------PLLDFDLVVLDDGDVWSRTFVRVLEVLESI 264 Query: 437 DILQNQYSALIT-NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML-SHWMVIKDGIIS 494 I++ + I ++PN +G +EAPRG L H + Sbjct: 265 KIIRQVLDKMPAGQIKNPKPVLKIEPNDV-------IGRVEAPRGELAYHLITDGTDKPG 317 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 + P+ N + E + G+ +AD P+ V DPCM+C Sbjct: 318 RLKIRTPTLIN---------LPASEHMMRGSNLADA--PVIVGHI----DPCMSC 357 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 4 RITIDPVT-RIEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +I I P+ +E + ++ ++ G RG+E I R+ +V+RIC Sbjct: 10 KIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERIC 69 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 G+C+ +H + RA E I+VP A+YIR II H H+++ Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNL 116 Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 68/387 (17%), Positives = 125/387 (32%), Gaps = 43/387 (11%) Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 L + +Y+Q L R+ + H AV + G+ Sbjct: 44 YNLRGLEWIAMRRNYIQLLYL---VERICGICSFSHNHTYTRAV--------EEMAGIEV 92 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 ER YI++ I +L + + + G L + + Sbjct: 93 PERAEYIRAIIGELERIHSHLLNLGV----------VGHAIGYDTVLHLSWLARERVMDI 142 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 GG N +++ + +E + I + KH Y++E + I YD Sbjct: 143 LEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKH--YREEV---MPKVEEIFLYDPT 197 Query: 357 SDDGKYSWVKSP-TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + P + GP A R + + + + I + +T Sbjct: 198 VEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGI-KPITPKEFTG 256 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 R++ R + +I++ + + K V E G+G Sbjct: 257 VIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKAEGAGIGRY 316 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 EAPRG H++ G P+ W + F + ++LVG +AD Sbjct: 317 EAPRGETIHYVRANPGT------DTPAKWKAREPTFPNLF-AVARALVGEQLAD------ 363 Query: 536 VVRTIHSFDPCMACA--VHVVDADGNE 560 V I S DPC++C V ++D++ + Sbjct: 364 VPVAIASIDPCLSCTDRVAIIDSETGK 390 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 9/99 (9%) Query: 12 RIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 +++G +D E+E G M RG+E+I + + +V+RICG+C+ +H + Sbjct: 25 KLDGERVVDIEMETG---------WMHRGIEKISEESTFDQSIFVVERICGICSASHPFA 75 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 + A E I+VP+ A+YIR++I H H++ Sbjct: 76 CINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGL 114 Score = 57.1 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 29/189 (15%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R+ +++ + V + + + R + E Sbjct: 214 VGPTARASGVAIDVRKDEPYAAYDLLDF-------GVVVREEGDIFAKTVVRILEVFESI 266 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISN 495 +++ +I + K + GE G+G EAPRG + H++ Sbjct: 267 KMIR----QIIEKLRKVKGPIYNDVKEIPAGE--GIGRHEAPRGEVFHYIRTDGSNRPVR 320 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 ++ PS N + Y+ S +G +V+ T+ S DPC C V Sbjct: 321 HKIRAPSYVN---------IPTYKASCIG------ENLADVLITLASVDPCYCCTERSVR 365 Query: 556 ADGNEVVSV 564 + + + Sbjct: 366 LQTEKGMEI 374 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 2/102 (1%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R E+ V++ RG+E+ + + DA ++ +R+CGVC+ +HA+S Sbjct: 183 IEPGHFRFFTFGED-VINLQAQLFYTHRGIEKTAEGKHFLDAVLVAERVCGVCSASHAVS 241 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 +A ES I+ P+ A+YIR ++L ++H+ + A Sbjct: 242 YAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMCA 283 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 120/350 (34%), Gaps = 43/350 (12%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 + I+P+ R+ ++ +V G + RG+E+ + D A + +R+CG+ Sbjct: 13 VWIEPI-------RLKLALDGELVKDVELEAGYVHRGLEKKFE-WDYNKAAYLAERVCGI 64 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVH---------FYQLSAL 114 CT H+ A ES + +++P A IRNI+L H H++ F L L Sbjct: 65 CTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFML 124 Query: 115 DWVDITSALQ-ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + + L + T + +L G++ + ++ +I D + + Sbjct: 125 CFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLEDMI 184 Query: 174 HPAMKLPPEVNLIAVAHYLQALECQRD--ANRVVALLGGKTPHIQNLAVGG------VAN 225 + + + + + AL+ R + L G V Sbjct: 185 VHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHVVEE 244 Query: 226 PINLDGLGVLNLERLMYIKSFIDKLSDFVEQV---------YKVDTAVIAAFYPE----- 271 ++ ++ + L I +L +E + D A P Sbjct: 245 GCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKTMPDGDGFARVEPPRGELF 304 Query: 272 WLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDE 321 + RGK + V + NG L P I+ L+ PIT D Sbjct: 305 YFVRGKKSKELDRVKVRTSTYANGPALIP--VIKGCQLADVGPITISYDP 352 Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 27/173 (15%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A +++ +Y +L + V + R I R + Sbjct: 211 VGPIAR------GSGIPYDVRIDAPYLLYGELKMKHV-VEEGCDVWARSIVRVRELFQSI 263 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 D+++ L G D +P + G +E PRG L +++ K + Sbjct: 264 DLIRQLVPMLE---GLPDDILAKSKTMP---DGDGFARVEPPRGELFYFVRGKKSKELDR 317 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 V ST+ +GP +L+ PV + +V S+DPC+ C Sbjct: 318 VKVRTSTYANGP------------ALI--PVIKGCQLADVGPITISYDPCIGC 356 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 20 DCEIENGVVSKA-WASGTMWRGMEEIVK--NRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 + +E V + + RG+E++ + + + + +RICG+C H++S + Sbjct: 185 ELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSYTMSV 244 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 E A IDVP A+YIR+IIL H H++ Sbjct: 245 ERAAKIDVPERAEYIRSIILEIERLHSHLLWI 276 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 29/174 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A G ++ + + + V L R++ R E Sbjct: 378 VGPVAR-------GSGLDRDVRRDYPYAAYRDVYFKVPVYNEGDNLARLLVRIDEVFESI 430 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 IL+ L G K +P G+G +EAPRG + H + G + Sbjct: 431 YILEQLIDKL-----PGGPIMAEKLEVPE--GVIGIGNVEAPRGEVIHVTITGHGRPYRW 483 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + P+ N + + L P+AD PL TI S DPC +C Sbjct: 484 RVRAPTYQN---------IPALKIMLRDAPLADA--PL----TIASIDPCFSCT 522 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 21 CEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESA 79 ++ + G RG++ I R+ + +RICG+C+ +H + RA E A Sbjct: 28 LTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERICGICSFSHNHTYTRAVEEA 87 Query: 80 LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 I+VP A+YIR II H H+++ L Sbjct: 88 AGIEVPERAEYIRAIIGELERVHSHLLNLGVLG 120 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 18/191 (9%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R S + + + + + + R R + Sbjct: 218 VGPTARASGLKVDARWSERLGVYPDLGVKPVMPQDVTGEKPHGDVFDRAAVRIGEIYQSL 277 Query: 437 DILQNQYSALIT-NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISN 495 D+L++ + I + + + +G+G EAPRG L H++ K G Sbjct: 278 DMLEHALDQMPEGKIKTFPKDNILVAKLKIMVDGEGIGRYEAPRGELVHYVRGKKGSDK- 336 Query: 496 YQAVVPSTWNSGPRNF-NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VH 552 P W PR ++ + + G VAD V + S DPC++C V Sbjct: 337 -----PLRW--KPREPTFPNLFAVAKGVTGDQVAD------FVLAVASIDPCLSCTDRVA 383 Query: 553 VVDADGNEVVS 563 VV +++ Sbjct: 384 VVQDGKKRILT 394 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 40/197 (20%) Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 DG+Y + P G+ E G LA + + ++ A Sbjct: 224 DRDGQY--LARPDCAGRVFETGSLA-----HWSWHPLISDLMDRFGAGLLP--------- 267 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 R+ R V E ++ L P + +G+ E Sbjct: 268 -------RLAARLVALAEGLREMEELVRDLKP------EPACSLPGL----SGEGLTLTE 310 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 A RG+L+H +V+ DG IS YQ + P+ WN P GP ++L G P A P+ + Sbjct: 311 AARGLLAHRVVLNDGKISQYQILAPTEWNFHPE------GPLARALHGLP-AGPDLEWKA 363 Query: 537 VRTIHSFDPCMACAVHV 553 I++ DPC+ACA+ + Sbjct: 364 RLLINALDPCVACAITL 380 Score = 50.2 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 13/176 (7%) Query: 14 EGHLRIDCEIENGVVSKAWASGT----MWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHA 69 E L + + +G V+ T R + R P + ++ + +C T A Sbjct: 4 EAGLSVSLRVRDGAVAAVLIRSTRMVQAARLFAK----RPPTEVLHLLPTVFSLCGTAQA 59 Query: 70 LSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV-----HFYQLSALDWVDITSALQ 124 ++ + A E A I + R +++ A T +H + +D ++ Sbjct: 60 VTGLNAMEKAAAITASPAQKAARTLLVLAETVTEHGLTIARDWPALAGGQPRLDHAKRIR 119 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 L W T ++I + + I + LP Sbjct: 120 GALAGLRGTLYPQGDWLSPGGGTLTADCDRICAAIDQARQAITQLMGHDIDELVLP 175 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 1 MSQ---RITIDPVTRIEGH-LRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWM 55 MS+ I I P+ + LRI ++ A G + RG+E+I++ + Sbjct: 1 MSENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIH 60 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 + +R+CG+C+ H ++ E I++P A+Y+R + H H++ Sbjct: 61 LAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLI 111 Score = 45.2 bits (105), Expect = 0.006, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 59/188 (31%), Gaps = 32/188 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+ +G + +L K E R++ R E Sbjct: 215 VGPICR-----GSGLPESDWRLRHSTYQELKFKPVWREEGD---NFARMMVRHEEIIESV 266 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISN 495 +++ G +K KG EAPRG +++ M I D GII Sbjct: 267 RLIREALEHYEECSGDIRVKAEIK-------GGKGEWRNEAPRGEVTYRMEITDGGIIKR 319 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH--V 553 P+ N Y+ L P + V S DPC++C V Sbjct: 320 IMIRTPTVMNLE---------AYKYMLKTCPTV-----ADAVSAYTSIDPCVSCTERCIV 365 Query: 554 VDADGNEV 561 DG E+ Sbjct: 366 AVKDGKEI 373 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 25 NGVV--SKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNI 82 NG V +A G RG+E + R+P + RICG+C HAL +A E +I Sbjct: 30 NGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICGICGVHHALVFAQAVEQIADI 89 Query: 83 DVPVNAQYIRNIILAAHTTHDHIVH 107 +VP A Y+R II HI+ Sbjct: 90 EVPDRAYYVRTIIAEFERIQSHILW 114 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 16/191 (8%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP + R + + + + + RII R + Sbjct: 217 VGPTSRASGLAMDVRIDSPYAAYGDLD-FDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSI 275 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 DI++ + + + +EAPRG H++ + +G Sbjct: 276 DIIRQCMKQMPEGPVLAEEKYAKLLMNLKKASGEAFARVEAPRGEDMHYVRM-NGKQE-- 332 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVV 554 P W +++ + + + L G +AD + S DPCM+C V VV Sbjct: 333 ---APEMWKVKASTYSNQM-AWVEILQGEQIADIPI------IVASIDPCMSCTDRVAVV 382 Query: 555 DADGNEVVSVK 565 DGN + K Sbjct: 383 GQDGNAGIMTK 393 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 20 DCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAES 78 D E+ V A + + RG+E +V+ RD D + RICG+C+ H+L +A E Sbjct: 23 DLVTEDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHVADRICGLCSFMHSLGYCQAVEE 82 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 ++I+VP A Y+R+I H HI Sbjct: 83 IMSIEVPQRALYLRSIWAELSRIHSHIFWL 112 Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 32/175 (18%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A A+G L Y ++ H R R Sbjct: 214 VGPMAR-----ASGLAIDMRALGYAAYKYLEVEPVVESAGDCH---ARCRVRIREIFHAI 265 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 D+++ + V + T + + +E PRG + H++ + Sbjct: 266 DLIRQAVGKIPAGP--------VDVKVTGTPDGEYYSRVEQPRGEVIHYVKGNGARFLQR 317 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 ++ VP+ ++ + L G+ +AD I + DPC++C Sbjct: 318 FRVRVPT---------FSNIPAMVKVLKGSQLADVPN------IILTLDPCISCT 357 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R E + A +G+E++++ +D + IV+R+CGVC +HAL+ Sbjct: 201 IEPGHFRFQTIGETVLHLDAQL-FYTHKGIEKLLEGKDLEEGLKIVERVCGVCAVSHALA 259 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 A E ++VP R ++ ++H+ L A Sbjct: 260 YCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCA 301 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%) Query: 9 PVTRIEGHLRIDCEI---ENGVVS----------------KAWASGTMWRGMEEIVKNRD 49 P R+EG + + GV+ A T +G E+I + Sbjct: 164 PFFRVEGEGVFEIPVGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFT-HKGTEKIFETMP 222 Query: 50 PRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 A + +RICGVC +HA +A E I++P A++IR I++ ++HI Sbjct: 223 YTKALFLAERICGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHI 278 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 20 DCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAES 78 +E+ VV KA G R + ++++ RD + +R+CG+C HALS A E+ Sbjct: 130 KMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVEN 189 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGV 137 + VP A IR +I H++ L D V + L ++ + Sbjct: 190 IGQVTVPKRADIIRTMICEMERIQSHLMAIGILG--DLVGYKTMLMQFLRIREDIQDSL 246 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 17 LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 ++ V++ A RG+E+ V ++ + +++RICG+C+ H S Sbjct: 23 ANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLENIYLLERICGICSHAHTTSFAIG 82 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 E L++DVP A YIR +I H H++ Sbjct: 83 VEDLLDLDVPRRANYIRTLIGELERIHSHMLWL 115 Score = 49.8 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 26/145 (17%) Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG---EFKGVGFLEAP 478 L R R E I++ +I GD KP E V EAP Sbjct: 255 LARTTVRIREIAESISIIR----QAAADIPDGDLKASPKPVQALLAQIPEDDVVSRYEAP 310 Query: 479 RGMLSHWMVIKDG--IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 RG L H++ DG VP+ N ++L G+ +AD Sbjct: 311 RGELIHYIR-ADGTDTPERVHIRVPTLANW---------PTVVEALRGSYIADTPI---- 356 Query: 537 VRTIHSFDPCMACAVHV-VDADGNE 560 + DPC++C + V+ DG+ Sbjct: 357 --VVAGIDPCISCTSRIGVETDGSH 379 >UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8_RHOCA Length = 503 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 5/201 (2%) Query: 15 GHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 G R+ ++ G V + G+E +++ R + VQR+CG+C +H L++V Sbjct: 35 GQGRVTICLDARGQVRQVQLHLLDLCGVETLLEGRAIAEIPEAVQRLCGLCPVSHHLAAV 94 Query: 74 RAAESALNID-VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 +A + D + A+ +R ++ H V Y L+ D + + A + Sbjct: 95 KAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLLGFDSEPA-RRGLVD 153 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYL 192 + + Q ++ + G A G LP A Sbjct: 154 VARAFPQLATEGVLMRRFGQEVVRAITGGRLRG--AGAVPGGMRRPLPRAARDQLRADVD 211 Query: 193 QALECQRDANRVVALLGGKTP 213 Q ++ A RV+ L G P Sbjct: 212 QVIDWAAGALRVLERLHGTNP 232 Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 21/194 (10%) Query: 375 VEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCE 434 VGPLA + V E + + ++A G L+ + H R V Sbjct: 306 YRVGPLARLQVCDLLTSEKAETERQRLLA---PGDGKPLQGSVFH-----HGARLVELLH 357 Query: 435 LQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GII 493 +++++ L+ + P + + VG +EAPRG L + + G I Sbjct: 358 AAELIRD----LLDDPELLGTDLMADRGAP---QREAVGVIEAPRGTLLQRYEVDEAGRI 410 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV 553 ++ + NS + G Q G V + + + I +FDPC++CA H Sbjct: 411 RRCTLLLSTRNNSRAMDAALQ-GVAAQYCDGRRVTE-DLLAHIEVAIRAFDPCLSCAAHA 468 Query: 554 VDADGNEVVSVKVL 567 + G +SV+++ Sbjct: 469 L---GQMPLSVELI 479 >UniRef50_Q21QY7 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QY7_RHOFD Length = 391 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 43/192 (22%) Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + + PT+ G+ E GP + +L + A HS Sbjct: 242 FAQQPTWLGQCFENGP-------------------------WTRLRHRQTQTATPHSAWT 276 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R+ R + E+ A + G + + + E RG+L Sbjct: 277 RLSTRWLELIEIA--------AASAPTQSLGRVALLATGAMKLGPGQALAWCEMARGLLL 328 Query: 484 HWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 HW+ + G + +YQ V P+ WN P G +++ P D L + Sbjct: 329 HWVQLDAQGAVQDYQVVAPTEWNFHP------DGALARAVAALPAGDT---LGASTLAAA 379 Query: 543 FDPCMACAVHVV 554 FDPC+ C + V Sbjct: 380 FDPCVLCTIKQV 391 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 3/152 (1%) Query: 19 IDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAE 77 + +E+ VV K G R + ++++ RD + +RICG C + HALS R+ E Sbjct: 162 LKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERICGFCNSHHALSFARSVE 221 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGV 137 +ID+P A+ R ++ H++ + D + L EM + Sbjct: 222 DIASIDIPPKAKLARTLLCEMERIQSHLLAVGLIG--DLTGFRTMLMHSLRVREEMQDSL 279 Query: 138 STWHLNSPEEFTKVQNKIKDLVASGQLGIFAN 169 I+ + Q N Sbjct: 280 EVVSGQRVTHGLITIGGIRRDITPAQADFILN 311 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 21 CEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESA 79 ++ + G RG++ I R+ + +R+CG+C+ +H + VRA E Sbjct: 27 ITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCGICSFSHNHTYVRAVEEM 86 Query: 80 LNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 I+VP A+YIR I+ H H+++ Sbjct: 87 AGIEVPERAEYIRVIVGELERIHSHLLNL 115 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 17/193 (8%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R S Q + + I + R+ R Sbjct: 217 VGPTARGSGIKEDSRWSEQLGVYPDLGIKPVTPEDVTGEKARGDVYDRMAVRIGELWMSL 276 Query: 437 DILQNQYSALIT-NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISN 495 D+L++ + I + + G+ +G+G EAPRG L H++ + G Sbjct: 277 DLLEHALDQMPEGKIKTFPKDNILVAKLKLLGDGEGIGRYEAPRGELVHYVRGQKGRDG- 335 Query: 496 YQAVVPSTWNSGPRNF-NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV- 553 P W PR ++ ++L G +AD +V I S DPC++C V Sbjct: 336 -----PVRW--KPREPTFPNLFTIAKALEGNELAD------LVVAIASIDPCLSCTDRVA 382 Query: 554 VDADGNEVVSVKV 566 + +G +VV + Sbjct: 383 IVKEGKKVVLTEK 395 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 17 LRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 LRI + V G RG+E+I++ + A + +R+CG+C+ H + + Sbjct: 42 LRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCGICSHAHNMCFIGG 101 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E D ++R ++ H++ Sbjct: 102 VEKLAEGDPAPRGLFLRVLVQELDRIQSHLI 132 Score = 50.6 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 32/185 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A A+G + +L E V G + L RI+ R C + Sbjct: 236 VGPQAR-----ASGVPESDMRLQEPV---YPELGFKPVYRKEGDNLARILVRYDECLQSI 287 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISN 495 +++ ++ + +G H ++ N +EAPRG L + M + G++ Sbjct: 288 ELI----ERIVDELPEGRHRRELEVNAGHVDNR-----VEAPRGELVYDMELAPGGVVKR 338 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 PS N + E G+P + V T S DPC+AC V Sbjct: 339 VTIRTPSVPN---------IRVLEAIAPGSPSI-----ADAVATYASLDPCVACNERFVV 384 Query: 556 ADGNE 560 D E Sbjct: 385 IDERE 389 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ CE V K G M +G+E I++ R ++ + +R+CG+C+ H + + Sbjct: 23 RLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMFLAERVCGICSVVHNMVFIETM 82 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E +I VP A Y+R ++ HI+ Sbjct: 83 EEISDIPVPPRAAYLRVVVNELDRMASHIL 112 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 31/174 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A A+G E + +L Y++L + + + R++ R + Sbjct: 216 VGPTAR-----ASGVEDSDLRLRHP--TYRELGFTQITRTEGDN-FARVMVRFQEVFQSI 267 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISN 495 D+++ L +G GE G EAPRG L++ + + G + + Sbjct: 268 DLIRKCVETLPEGPIRGGGLC-------KAGEASYAG--EAPRGELTYTIKTDEYGRVVD 318 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 PS N ++ + + D +V T S DPC+AC Sbjct: 319 IAIRTPSIMNI-------------EACAHSMIVDAASIADVTSTFISSDPCIAC 359 >UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6S7_MAGSA Length = 367 Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 40/198 (20%) Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 DDG Y P G E GPLA S + + +++ Y Sbjct: 207 DDDGAYR--TRPDSAGIVFETGPLARQ---------SRRPLMGLLMSQY----------- 244 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 + + R R + +++ L GD A + G+G ++ Sbjct: 245 -GNGLMPRFSARMMEMASALREVEDLVQDL-----SGDSGGL----PMARHDGSGLGVVD 294 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 A RG+L+H + +++G++S Y+ + P+ WN P GP Q L G DP + Sbjct: 295 AARGLLAHRVELREGLLSAYRILAPTEWNFHP------DGPLAQGLRGMSGPDPEGRAAL 348 Query: 537 VRTIHSFDPCMACAVHVV 554 + S DPC+ + VV Sbjct: 349 LAA--SLDPCVPFRIEVV 364 Score = 42.5 bits (98), Expect = 0.044, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 33/273 (12%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 E L I + V + + + R P ++ + +C T L+ + Sbjct: 5 ESSLSITLHLAEDRVETVEIGSSRPVQASDRLTGRRPDQVLALLPNLYSLCGTAQGLAGL 64 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIV-----HFYQLS-ALDWVDITSALQ--- 124 A E+A+ ID R I+ +H L A D V + Sbjct: 65 AAVENAVGIDAAPEQHKARRILCLIEMAAEHAAAALRDWPALLGEAPDLVALKPIRPLIM 124 Query: 125 -----------------ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIF 167 E L G+ + V +++ V + F Sbjct: 125 AVRKALYPEGDWLAPGGGRLAPDRETLTGIVHRLGEAASRGDLVADRLLARVEDLGMEGF 184 Query: 168 ANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVV---ALLGGKTPHIQNLAVGGVA 224 PP+++ A A + D+ +V L ++ G+ Sbjct: 185 GAAPPNLMPETGPPDLDARLAADDDGAYRTRPDSAGIVFETGPLARQSRRPLM----GLL 240 Query: 225 NPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 +GL R+M + S + ++ D V+ + Sbjct: 241 MSQYGNGLMPRFSARMMEMASALREVEDLVQDL 273 >UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF90_METS5 Length = 379 Score = 92.2 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 43/188 (22%) Query: 370 FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRT 429 + G VEVGPLA L ++++ + G S L R + R Sbjct: 223 YDGTLVEVGPLAQAL------------TFDDMIVKLHRDMG--------PSPLLRELARV 262 Query: 430 VHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK 489 +L LQ+ +GD G+G+LE+ RG+L H + +K Sbjct: 263 RVAAKLILGLQDLEIESEGLHIRGD----------------GIGYLESIRGVLVHQVKVK 306 Query: 490 DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 D + Y+ + P+T+N+ P G E +++G PV + P E+ + S D C Sbjct: 307 D-KVVEYRVIQPTTFNASPG------GALENAVLGIPVRNYRNPWEISLAVSSLDSCFIT 359 Query: 550 AVHVVDAD 557 V V D Sbjct: 360 NVEVYLDD 367 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 19 IDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAES 78 + +I +G V A +SG RG E + +DPR+ I+ R+ C +H + ++A + Sbjct: 12 LKVKISDGKVVYAKSSGNKLRGYERMFIGKDPRELPDIIPRVLSTCAQSHTFAYIKAVGN 71 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL 114 N I N++++ +I H Y Sbjct: 72 -------NNLDLIGNLMVSLEIIESNIKHPYAYWLP 100 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 19/270 (7%) Query: 21 CEIENGVVSKAWAS-GTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSVRAAES 78 E +N V++ + G + RG+E+ R + +V R+CG+C+ THA + E Sbjct: 24 FETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVARVCGLCSITHAGAYTHGIEK 83 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIV---HF-----Y-QLSAL------DWVDITSAL 123 L I+ Y+R +++ H H++ H Y L D +DI + Sbjct: 84 LLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYENLFMQTFRYREDVMDILERI 143 Query: 124 QADPTKAS-EMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + + +++ GV+ E+F + + + F N Y K Sbjct: 144 TGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTEKLIEFFENDYTFALKTKGVGT 203 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 ++ + A R A+ + + ++ VG + N+ R Sbjct: 204 ISKEMAEKFNAAGPIAR-ASGLETDARAEYDYLPFEEVGYKLQTRTEGDVWARNMVRFDE 262 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEW 272 I + I+ + ++ + + + V P+ Sbjct: 263 IMNSIEMCLNILDGIPEGEHRVKVKGRPDG 292 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 31/175 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP+A A+G E+ + + + G L+ R + R Sbjct: 215 AGPIAR-----ASGLETDARAEYDYLPF--EEVGYKLQTRTEGDVWARNMVRFDEIMNSI 267 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGII-SN 495 ++ N ++ I +G+H VK + +EAPRG +++ + Sbjct: 268 EMCLN----ILDGIPEGEHRVKVKGRPDGETFVR----VEAPRGECFYYLKGNKTKVLER 319 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + VP+ ++ ++ VG +D + SFDPCM+C Sbjct: 320 VRIRVPT---------YANIPVLKELFVGEKYSD------AQAIVLSFDPCMSCT 359 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 91.0 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 19 IDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAE 77 + + + + G RG+E++ + IV R+CG+C HA VRA E Sbjct: 30 LKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICNLVHANCYVRALE 89 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIV 106 L++ A+Y+R + + H H++ Sbjct: 90 EILDMHPNERAKYLRVLAMEFERVHSHML 118 Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 26/192 (13%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A A +++E +Y + N + + S R+I R E Sbjct: 222 VGPPAR------ASGVKIDVRVSEKYEVYGDIPFNMVTRNEGDS-WARMIVRWDEAIESL 274 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 ++ + L + + P + +EAPRG L+ + V+ DG Y Sbjct: 275 NMAKYILEHLPNDGNPVPDERRLPRRFPP---GEAFTRVEAPRGELT-YYVMSDGKPKPY 330 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC--AVHVV 554 + + + P N Y VG +AD P+ + S DPC++C V V+ Sbjct: 331 RLKIKT-----PSFTNIINSGY--LYVGHTIAD--LPV----ILVSLDPCISCMERVTVI 377 Query: 555 DADGNEVVSVKV 566 D + N V + Sbjct: 378 DLENNTRRKVPI 389 >UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=6 Tax=Rhodopseudomonas palustris RepID=Q07S92_RHOP5 Length = 370 Score = 89.1 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 43/196 (21%) Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + P G+ E G LA + +A L + LG Sbjct: 212 FASLPDLDGRLPETGALAR--------------------------NADHPLIAALGNGLG 245 Query: 424 -RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R++ R + AL+ + +G+ + G+ +E RG L Sbjct: 246 ARLLARLIEI--------RATPALLRALLRGEAMPIDPISSRQIAPGIGLAAVECARGRL 297 Query: 483 SHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN-KPLEVVRTI 540 H + + G++S + + P+ WN PR GP ++L + D + V R + Sbjct: 298 HHLVALDRQGLVSQFAILAPTEWNFHPR------GPLFRALQNLALRDDDADRARVARLV 351 Query: 541 HSFDPCMACAVHVVDA 556 +FDPC+A +V + +A Sbjct: 352 AAFDPCVAFSVTIAEA 367 >UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TW35_METKA Length = 205 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 32/149 (21%) Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R I R + L + + L TT+ P+ G G +EAPRG L Sbjct: 23 RNIARILEALLLTRLALHWIDDL-----PTTGTTYKDPS--RRSGCSGTGVIEAPRGTLV 75 Query: 484 HWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL-------- 534 H + + DG + NY+ + + N P E+S+VG V K Sbjct: 76 HRVSVGSDGKVFNYEIITSTNLNHAP---------IEESMVGERVYVDEKLAAAKRQLSE 126 Query: 535 -------EVVRTIHSFDPCMACAVHVVDA 556 + R SF+PC +CA H + Sbjct: 127 SERFLLGDACRAARSFNPCNSCAPHAIVK 155 >UniRef50_P40597 Hydrogenase expression/formation protein hoxV n=4 Tax=Azotobacter RepID=HOXV_AZOVI Length = 348 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 439 LQNQYSALITNIGKGDHTTFVKPNIPATGE---FKGVGFLEAPRGMLSHWMVIKDGIISN 495 ++ AL+ + + P PA +GVG RG L H + + DG + Sbjct: 234 IEQHVGALLRRTAQAIDSLQSPPAPPAVAGLAAGEGVGLARTARGWLLHRVCLDDGAVGT 293 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 +Q + P+ WN GP + L G VA + I + DPC+A V +V Sbjct: 294 WQLLAPTDWNFHA------DGPLRRRLCGVRVAAGEVEALLRELILALDPCVAFEVKIVH 347 Query: 556 A 556 A Sbjct: 348 A 348 >UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL3_RHOVA Length = 394 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 65/197 (32%), Gaps = 35/197 (17%) Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 DD + +V +P + G E PLA L LE Sbjct: 231 DDSQAHFVAAPDWEGAPRETSPLARSL---------------------DHPLIRALETDD 269 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 R+ V + L++ + L D P T G+ +EA Sbjct: 270 GFGLGARLAACLVELASVPRRLRDAAATL-------DAPNHAAPERDETAPGIGLSQIEA 322 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + + G +S Y+ + P+ WN P G + L D + + Sbjct: 323 ARGRLVHAVEMSGGKVSRYRILAPTEWNFHPE------GAAARGLARIAQGDSHDVARIA 376 Query: 538 RT-IHSFDPCMACAVHV 553 R + + DPC+ V V Sbjct: 377 RLFVTAVDPCVGYEVRV 393 >UniRef50_Q2RV77 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV77_RHORT Length = 406 Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%) Query: 463 IPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSL 522 + A +GVG +EA RG+L H +V+++G ++ ++ + P+ WN P+ G L Sbjct: 314 VSARSSGEGVGMVEAARGLLIHRVVVREGRVARWRILAPTEWNLHPQ------GALASLL 367 Query: 523 VGTPVADPNKPLEVVR-TIHSFDPCMACAVHVV 554 +G PV+ + + + + DPC+ C + + Sbjct: 368 IGCPVSGTEEACLLAHWLVLALDPCVPCVITAI 400 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 86.8 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 5/153 (3%) Query: 2 SQRITIDPV-TRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQR 59 + I + P+ +E + E++ V + G + RG+E + R+ ++ +R Sbjct: 3 TYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTER 62 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 +C +C+ +H + A ES + VP AQY+R I H+ + ++ L + Sbjct: 63 VCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHM---FNVAILAHIVG 119 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQ 152 +L +A E+++ + + + Sbjct: 120 FDSLFMHVMEAREIMQDTKEAVFGNRMDIAAMA 152 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 32/176 (18%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 +GP+A R+ + + + L + R + R Sbjct: 214 MGPVARGSGHAYDVRKQAPYAVYDRLDFEMALGEHG-------DVWSRAMVRWQEALTSI 266 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG--IIS 494 +++ + D T P +P + V EAPRG L +++ +G Sbjct: 267 GLIRQCLRDM------PDGPTKAGP-VPPIPAGEAVAKTEAPRGELIYYLKT-NGTDRPE 318 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + VP+ N N + G ++D + ++S DPC++C Sbjct: 319 RLKWRVPTYMNWDALNV---------MMAGARISD------IPLIVNSIDPCISCT 359 >UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJU8_9DELT Length = 178 Score = 86.4 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 13/168 (7%) Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 + + T A S R + + + + + T Sbjct: 13 PTSALGRFRELTAANALPQSAFHYHYARLIEIIHGLERIGELLNEPEILGKRVRATA--- 69 Query: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 +GVG EAPRG L H I ++G IS ++ + N+ N + Sbjct: 70 ----GANAPEGVGICEAPRGTLIHHYGIDEEGKISAVNMIIATGNNN--LAINQGLLQAA 123 Query: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 ++L+ + + +DPC++C+ H A G+ +V+++ Sbjct: 124 RALIQNGQFSEGALNRIEALVRCYDPCLSCSTH---AQGSRPFTVEII 168 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 5/171 (2%) Query: 13 IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 + G +D IE V KA+ G + +G+E+I++NR + R+C + + T+ + Sbjct: 41 VPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIVYTDRMCYLASITNNEA 100 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV----HFYQLSALDWVDITSALQADP 127 A E L I P AQYIR I+ H++ L A + + Sbjct: 101 YCGAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDRE 160 Query: 128 TKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 M ++ F V+N + D A I Sbjct: 161 DIVYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILKRMRERTEEYM 211 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 85.6 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 17 LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 LR+ + ++ +G + RG+E+ + D A + +R+C +CT H+ Sbjct: 18 LRLKLTTDGELIKDVDLEAGYVHRGLEKKFE-WDYNKAAYLSERVCAICTQHHSTCFCLG 76 Query: 76 AE-SALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E + +++P A IR I+L H H + Sbjct: 77 VEGTMAGLELPRRAAIIRTIMLELERLHSHFL 108 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 29/174 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R + + L V + + + R + R + Sbjct: 212 VGPVARGSNVPYDVRHAAPHLLYREVKVTPIVEKDG-------DCWARSLVRVRELFQSI 264 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 D+++ L+ + F K GE + +EAPRG L +++ K + Sbjct: 265 DLIR----QLVPLLDGTPDELFAKSKAMPEGEN--IARVEAPRGELFYYVRGKKSKELDR 318 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 + + N +G P+ + +V +FDPC+ C Sbjct: 319 VKVRTSTYGNG--------LGIA-------PLIKGSHIADVGLITITFDPCIGC 357 >UniRef50_UPI0001913BF4 hydrogenase 2 large subunit n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001913BF4 Length = 65 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 58/65 (89%), Positives = 61/65 (93%) Query: 266 AAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIK 325 AA+YPEWL RGKGAVNYLS PEFPTD KNGSFLFPGGYI NADLS+YRPITSHSDE+LIK Sbjct: 1 AAYYPEWLERGKGAVNYLSAPEFPTDGKNGSFLFPGGYITNADLSTYRPITSHSDEFLIK 60 Query: 326 GIQES 330 GIQES Sbjct: 61 GIQES 65 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 3/101 (2%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R E ++ G RG+E++ + + A ++ +R G HAL+ Sbjct: 83 IEPGHFRFSVLGE-RILHLEVRLGYQHRGVEQLFQGKSLEQALLLAERAGGE-PVAHALA 140 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 +A E+AL ++VP A +R ++L H+ H L Sbjct: 141 FCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLF 181 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 3 QRITIDP-VTRIEGHLRIDCEIENGVVSKAW--ASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++I I P + +E + ++++ + + +G + RG+E + ++ ++ +R Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLILTER 61 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHD---------HIVHFYQ 110 +C +C+ H S A E I+V A Y+R I H+VH Y+ Sbjct: 62 LCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYE 121 Query: 111 LSALDWVDITSALQ 124 L D +D +Q Sbjct: 122 L-MRDTMDTREIMQ 134 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 30/174 (17%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP+A R + + + L + R+ R Sbjct: 212 GPVARGSGINNDVRVKAPYAAYDELEVRVDLESDG-------DVYSRMKVRWYDIKNAIK 264 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISNY 496 IL+N + N+ G +P+IPA + EAPRG L +++ G Sbjct: 265 ILKNAIN----NLPSGPIHLEKRPHIPA---GEATVRTEAPRGELIYYVKTDGGQKPKRM 317 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + VP+ N E+ + G +D VV ++S DPC++C Sbjct: 318 RWRVPTYMNF---------QALEEMIKGNRASD------VVLILNSIDPCVSCT 356 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G+ + +E V KA G + RG E++++ R ++ RIC + L Sbjct: 16 HGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIPRICVPEPDINELCY 75 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL 114 A E IDVP AQ+IR I+L +H+ F + Sbjct: 76 ALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGP 117 >UniRef50_P28153 Hydrogenase expression/formation protein hupK n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPK_RHILV Length = 370 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 19/183 (10%) Query: 376 EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCEL 435 EV A+ ++ E A + + E L R+ R Sbjct: 202 EVVARLRDEAGYASL-PHLSGRIAETGAYARSASAGLPEAPHLAR---RLRARI------ 251 Query: 436 QDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIIS 494 ++ + L GD T G G +E RG L H + I DG ++ Sbjct: 252 -GDVRISLTQLTALARTGDFDCASLACSGPTPGAGGYGAVECARGRLYHQIEIGGDGRLA 310 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV-ADPNKPLEVVRTIHSFDPCMACAVHV 553 Y+ + P+ WN P GP+ ++L+ +PV AD + R FDPC+A ++V Sbjct: 311 AYRILAPTEWNFHP------AGPFVETLLSSPVGADEAAVRSISRLAVLFDPCVAFEINV 364 Query: 554 VDA 556 +A Sbjct: 365 REA 367 >UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XQ1_RHOPB Length = 368 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 47/199 (23%) Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 DD + ++ +P G+ E GP A ++ + Sbjct: 191 DDQEETFAAAPWLPGRRPETGPAARAALRGLRPASPAE---------------------- 228 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 R+ R E D LI + D + ++ + + G G +E Sbjct: 229 ------RLCARLAEVAEAAD--------LIAGTQRADGSEWL--STASLGPGVGFCAVET 272 Query: 478 PRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE- 535 PRG L H + + G + Y + P+ WN GP+ +L PV + + Sbjct: 273 PRGRLHHLVRLAPQGTVQRYLILAPTEWNFAA------DGPFAAALDKFPVGEDGDAAKS 326 Query: 536 -VVRTIHSFDPCMACAVHV 553 + R +DPC+ CA+ V Sbjct: 327 AIARLASLYDPCVGCAIEV 345 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 20/210 (9%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 G +RI ++ + V RG+ + P + +R+ +C T+H L+++ Sbjct: 8 GCVRITADVADARVVARSVLSDRPRGLAAAIARHRPVAIPDLTRRLFALCGTSHWLAAIN 67 Query: 75 AAESA-LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 A A ++ P +R +LAA H+ ++D S ++ P +A+ + Sbjct: 68 ALAMAGAAMEAPSPDTAVR--MLAAERVVAHLQAT-------FIDWGSTVRPTPIEAAAL 118 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--------GHPAMKLPPEVNL 185 ++ + + + +A+ A G W G ++ P L Sbjct: 119 SSALTLAKGSHIDGEALLGAVGALGMATRDRNTTAAGSWVERLLITAGADSIGAPTVDVL 178 Query: 186 IAV--AHYLQALECQRDANRVVALLGGKTP 213 A L AL+ Q + L G+ P Sbjct: 179 TANDDEQVLAALDDQEETFAAAPWLPGRRP 208 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 82.2 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDP---RDAWMIVQRICGVCTTTH 68 IE GH R E+ + KA + RG+E++ + R+ R+A + +RI G + H Sbjct: 155 IEPGHFRFSVIGESILRLKARLWF-VHRGVEKLFEGRNALGAREAVELAERISGDSSAAH 213 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 +L+ A E AL +DVP +R +++ ++H+ L+ Sbjct: 214 SLAHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALA 257 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G+ + ++ + +A G + RG E++++ R + ++ RIC + + Sbjct: 16 HGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIPRICVPEPDINEMVY 75 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL 114 A E I+VP A +IR IIL +H++ + Sbjct: 76 AMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGP 117 >UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83WU9_THIRO Length = 389 Score = 81.4 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 43/187 (22%) Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 +V PT+ G+ E P + L L +L+ VA L Sbjct: 237 FVAHPTWQGQPRETSPFTR-VHPLPLIEAYGPGLL-------VRLSAQLTVVATGLRLLS 288 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R T A+G G+G + A RG+L+ Sbjct: 289 RCCA----------------------GSASAQPTL------ASGNGVGLGRVFAARGLLA 320 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK-PLEVVRTIHS 542 H + ++DG + +Y+ + P+ WN PR G ++L P + + I + Sbjct: 321 HLVRVEDGRVRDYRILAPTEWNFHPR------GVVARALEALPPGPEEQVRRQAELLITA 374 Query: 543 FDPCMAC 549 DPC+A Sbjct: 375 IDPCVAF 381 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%) Query: 9 PVTRIEGHLRIDCEI---ENGVVSKAWAS---------------GTMWRGMEEIVKNRDP 50 P R+EG + + GV+ G + +G+E+I ++ Sbjct: 158 PYHRVEGEGVFEIPVGPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTY 217 Query: 51 RDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 + +R G H+ + +A E I+VP A+YIR + L ++H+ Sbjct: 218 DKGVFLSERTSGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHL 272 >UniRef50_UPI0001874346 putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI0001874346 Length = 454 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%) Query: 7 IDPVTRIEGHLRIDCEIENG--VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 +DP R+D ++ + ++ + R ++ ++ + D I +R+CG+C Sbjct: 18 VDPF-----EARLDVYRDDNGAITQVSFDLSGLPR-IDGMLVGKRALDVPDITKRLCGLC 71 Query: 65 TTTHALSSVRAAESALNI-DVPVNAQYIRNIILAAHTTHDHIVHF 108 H L+ VRA E I D+P AQ IR ++ A T + F Sbjct: 72 PVVHHLAGVRAVEDLYGISDIPRTAQLIRELLAAGSTLDNLATKF 116 Score = 63.3 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 14/130 (10%) Query: 424 RIIGRTV--HCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 R R + + L ++ T ++ N G GVG ++ PRG+ Sbjct: 296 RDAQRQLLADTVAWAKRVLADGELLGDHVCDPKAVTAIE-NADFEGHRSGVGMIDGPRGL 354 Query: 482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H DGII++ Q + P+ N P+ ++ + D + V ++I Sbjct: 355 LVHRYTAGADGIITDCQIMTPTAQNE----------PWLTRMLTEQLCDGGETAGVEKSI 404 Query: 541 HSFDPCMACA 550 + DPC+ C+ Sbjct: 405 WAADPCLPCS 414 >UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobiluncus RepID=C2KSR5_9ACTO Length = 430 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 IDP EGH+ + + + G + + R +E ++ + +A + +R+CG+C Sbjct: 18 IIDPT---EGHITVSVDTK-GHRHARFDLQGLPR-VESLLVGKSAAEALKMTERLCGLCP 72 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 H L+ RA + + + V A+ +R ++ H + F Sbjct: 73 VAHHLAGTRALDGLVGVRVKSYAEMVRRLLHYGSMIEAHSLRF 115 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 50/162 (30%), Gaps = 12/162 (7%) Query: 390 GRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITN 449 GR V +L+ L + + R + + ++ S L+ Sbjct: 259 GRYRVGPVAQLSVGKVSTPRAASLQAQWLSAPPDAALARAIISLHVLELSGEIVSQLMKT 318 Query: 450 IGKG--DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNS 506 D A G ++ PRG+L+H + +GII+ + P+ N Sbjct: 319 SENYHLDEQASTTKQWQA---GISTGLVDGPRGILAHTYEVNAEGIITRAVILTPTAQNE 375 Query: 507 GPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMA 548 + + + + ++I DPC+ Sbjct: 376 PWLAALLTAATTGDT------DETRREAALEQSIREADPCLP 411 >UniRef50_Q2BN45 Putative hydrogenase expression/formation protein hupK n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN45_9GAMM Length = 380 Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 22/146 (15%) Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVG 473 E+ +H R + + E+ + + + G+ Sbjct: 251 ELLAMHPVAQRFLALVLELQEIPQRIARFGKE------------QLGKEALVFSDLPGMS 298 Query: 474 FLEAPRGMLSHWMVIKDG----IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 ++A RG L+H + I + IS YQ + P+ WN P G +Q L G V+ Sbjct: 299 HVDAARGRLTHRVKITEQHGEARISEYQVIAPTEWNFHPE------GALKQMLKGVKVSL 352 Query: 530 PNKPLEVVRTIHSFDPCMACAVHVVD 555 R + + DPC+A V VV+ Sbjct: 353 VQARELTERLVLAIDPCVAYKVEVVE 378 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 38/87 (43%) Query: 13 IEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 + G + I ++ +++ + +G+ ++ + P+DA + I +C+ ++ Sbjct: 7 LSGRINISLSYDSEMITDLTIESSRPKGIAQLFVGQKPQDAVDRIPLIYSLCSVAQTIAG 66 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAH 99 + A ES L A R ++L A Sbjct: 67 LSAIESELGCKASEEAIIARKVLLLAE 93 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ V+KA G + RG+E++ + R+ VC T+ + Sbjct: 212 HGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEGLHYMQVIPHTDRLDYVCAMTNNYAY 271 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 VRA E + + +P A+Y+R I+ H+ Sbjct: 272 VRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFWL 307 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 25/238 (10%) Query: 15 GHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 G++ ++ V G + RG E++++ R ++ RIC L+ Sbjct: 20 GNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVEDPDHIELTYT 79 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 A E I+ P A+Y+R I+ H++ + Sbjct: 80 HAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGP-----------------IA 122 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 + ++W + + EE K + + W P+ E L + Sbjct: 123 ARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPS--DFKEKTLKVLKVIKP 180 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVG-----GVANPINLDGLGVLNLERLMYIKSF 246 ++ RD + + + L G G P +L +++ ++ Sbjct: 181 LIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAY 238 >UniRef50_P48342 Hydrogenase expression/formation protein hupK n=6 Tax=Bradyrhizobium RepID=HUPK_BRAJA Length = 362 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 19/173 (10%) Query: 381 ANMLVKLAAGRESTQNKLNEI-VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDIL 439 A +L AA ++ ++ + + R+ R +L Sbjct: 197 ARLLADGAAYSDAPDLCGQIPETGVWARRAHREEISSTAAGPAARLRARIAEVAQLC--- 253 Query: 440 QNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISNYQA 498 ++ +G ++ G KG +E RG L H +V+ D I N++ Sbjct: 254 -TWLDHGDADLERGIVASYR------LGAGKGAAAVECARGRLYHAVVLDDEDRIVNFEF 306 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR-TIHSFDPCMACA 550 + P+ WN R GP QSL G +A + VR + SFDPC+ + Sbjct: 307 LAPTEWNFHAR------GPLVQSLKGATLAAGRPGQDAVRALVGSFDPCVGFS 353 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 45 VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHD 103 V+ P DA ++V+RI G +HA++ A E ALNIDVP QY R I+L Sbjct: 88 VRGLSPEDALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRS 146 Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 26/158 (16%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP A A +++E Y KL G V GR R+ D Sbjct: 244 GPAAR------AAGIEVDARIDEKRLPYSKL-GFKPIVFDEPDAFGRFYVRSKEILSSAD 296 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQ 497 ++ + P +G +E+P+G L +++ I DG IS+ Q Sbjct: 297 LISKAIR----------FSGNSPPAKIEKTNGEGAARVESPQGDLFYYVKINDGKISDVQ 346 Query: 498 AVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 PS N + +++S++G D + E Sbjct: 347 ISSPSLLN---------IEAFKKSMIGNIFTDYHFNWE 375 >UniRef50_C6P4F4 Putative hydrogenase expression/formation protein HupK n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P4F4_9PROT Length = 360 Score = 76.0 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 69/213 (32%), Gaps = 47/213 (22%) Query: 345 WEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAI 404 W D +S P + GK E G A A ++ + + Sbjct: 194 WTAAEASQVCAGRWDADFS--ARPDWMGKAAETGAWA-----YHADNPMLRDVWQQSGSK 246 Query: 405 YQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP 464 L R++ R + E+ G+ + P Sbjct: 247 ----------------PLTRLLARMLDVVEMA---------------SGNALPRLDAASP 275 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 ATG+ G+ + RG+L H + + ++ Y+ V P+ WN P G + Q + G Sbjct: 276 ATGQ--GIAVVRTARGLLMHHVHVAAERVTEYEIVAPTEWNFHP------AGAFAQDMRG 327 Query: 525 TPVADPNKPLEVVRTIH-SFDPCMACAVHVVDA 556 D + + S DPC+A + V A Sbjct: 328 MMEQDRGRLQRSAQIAALSLDPCVAYDIEVRHA 360 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%) Query: 5 ITIDPV--TRIE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + P+ IE GH R E+ ++ RG+E++ + + + IV ++ Sbjct: 170 ILVGPIHAGIIEPGHFRFSLAGEH-ILQLEIRHFWKHRGVEKLAEGKTAEEVLEIVPKVS 228 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTT 101 G + H L+ V+A E N ++P A+YIR + Sbjct: 229 GDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERL 268 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 15 GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTT-HALSS 72 GH+R+ +++ ++ G + RG+E+I ++R +V+R C + + + Sbjct: 362 GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIPLVERPC-ITDFANYDICY 420 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 V+A E AL I+V A+YIR I+ H+ Sbjct: 421 VKAIEEALGIEVSERAKYIRTILAELCRIGTHL 453 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R + V++ G + +G+E++ RDP + R+ G T HA + Sbjct: 183 IEPGHFR-FLALGETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVSGDTTVGHAWA 241 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 + +A E A + P A ++R I + +H+ Sbjct: 242 ACQAMEHAAGVAPPERALWLRAIFIERERVANHL 275 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 13 IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 I G++ ++ + + A G + RG E++++ R + IV R+C + Sbjct: 40 ITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEPDFNEYC 99 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A E I+ P A++IR +IL + ++++ Sbjct: 100 YAAAVEELAGIECPERARWIRTLILEMGRINSYLMYL 136 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 GH R E + KA + RG+E++ R + +R+ G T HAL+ VR Sbjct: 165 GHFRFSVVGETVLNLKARLWF-VHRGLEKLFAGRAVAAGVELAERVSGDTTVGHALAYVR 223 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 A E A + + AQ IR I+L ++HI L+ Sbjct: 224 AVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALA 261 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 I+P GH R C+ E VV G +G+E +++ A IV R+ G T Sbjct: 162 VIEP-----GHFRFHCQGEA-VVRLEQRLGYQHKGIEGLLQGAPLDKAARIVARVSGDST 215 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 ++L+ RA E+A +VP A ++R ++ +H+ Sbjct: 216 VAYSLAFARAVEAATGCEVPARAHWLRGVMAEMERVANHV 255 >UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NIT9_CORDI Length = 347 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 44 IVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH 102 ++ R+ + IV+R+CG+C H L+ VRA ++ ++VP +AQ +R ++ + Sbjct: 38 MLVGRNVAEVPDIVKRLCGLCPVAHHLAGVRALDALCGVEVPESAQLVRLLLHHGSILY 96 Score = 59.1 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%) Query: 469 FKGVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 GVG +E PRG+L H ++ +DG++ + Q + P+ N E SL Sbjct: 257 GIGVGAVEGPRGLLVHRYVANEDGVLVDCQILTPTAQNEAWLASM-----LEASLQ--QD 309 Query: 528 ADPNKPLEVVRTIHSFDPCMACA 550 +D L V +I + +PC+ C+ Sbjct: 310 SDRGVELSVENSIRTANPCLPCS 332 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 16/256 (6%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ V A G M RG E++ + RD R M+ R + ++ L Sbjct: 43 HGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIMLANRHDWLSAFSNELGV 102 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E L ++VP A + R ++ + +H++ + S + + + + E Sbjct: 103 VMAVERMLGMEVPERAVWTRTLLAELNRVLNHLM--FLGSYPLELGGITPVFHAFREREE 160 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYL 192 + + +K+ V +G G + + ++ NL+ Sbjct: 161 LQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRS-RMDVYENLVLGN--- 216 Query: 193 QALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSD 252 E R R V +L H GV+ PI +L R ++ +L D Sbjct: 217 ---EIFRGRTRDVGVLSAAAVH-----AYGVSGPIARASGVDFDLRRDEPYLAY-GELRD 267 Query: 253 FVEQVYKVDTAVIAAF 268 ++ V + + +A F Sbjct: 268 TLKVVTRTEGDCLARF 283 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 13 IEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IEG+ + + + VV +G + RG E+I++ R +V RIC + Sbjct: 28 IEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVPRICVPDPPPMEET 87 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 RA E ++VP AQ+IR ++L H+ Sbjct: 88 YARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHL 121 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 14 EGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR +++ + K G + RG+E++ +++ ++ R+ + ++ ++ Sbjct: 79 HGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKTYQEFMPYTDRMDYLSPYSNNVAW 138 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A E +I+VP AQ+IR I+ H + Sbjct: 139 CLAVEKLADIEVPERAQWIRMIMSELARISSHCLWL 174 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+E V+ K G + RG+E++ ++ + I R+ + + + + Sbjct: 23 HGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSEDLTYVQSLPITDRMDYLSSMVNNVGF 82 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E + I +P A++IR I+ H+V ALD +T L A + Sbjct: 83 CVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWI-ATHALDIGAMTVFLYAMRDREYL 141 Query: 133 M 133 + Sbjct: 142 L 142 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R E VV G +G+E + I RI G T +A Sbjct: 192 IEPGHFRFTMSGEI-VVRMEERLGYTHKGIESLFSGASIDKGMEIAGRISGDSTVAYAYG 250 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDH 104 A E AL I P A++IR ++ +H Sbjct: 251 YALAVEEALGISPPPRAEWIRALMAELERMANH 283 Score = 43.3 bits (100), Expect = 0.025, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 20/143 (13%) Query: 390 GRESTQNKLNEIVAIYQKLTGNTLEVAQLHS--TLGRIIGRTVHCCELQDILQNQYSALI 447 GR S +N + Y+ + EV L R+ R + + +L+ + Sbjct: 393 GRASGRNFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVWIRILEIEQSVKLLEQILEGM- 451 Query: 448 TNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSG 507 + I G KG+ +E+ RG + W+ I +G I Sbjct: 452 ------PPGSICAERIGGEGSGKGLSVVESFRGDILTWIEIYNGKIIR----------CH 495 Query: 508 PRNF-NDDVGPYEQSLVGTPVAD 529 PR+ E+ +VG +AD Sbjct: 496 PRDPSWFQWPLLEKVIVGGVIAD 518 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G L++ CE E V G + RG+E++ +++ A + R+ + + T+ + Sbjct: 26 HGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKTYPGAMTLTDRLDYISSMTNNIGY 85 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 A E + I+ P A++IR ++ H++ ALD +T L A Sbjct: 86 CLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWL-ATHALDIGAMTVFLYA 137 >UniRef50_Q58137 Uncharacterized protein MJ0727 n=3 Tax=Methanocaldococcus RepID=Y727_METJA Length = 298 Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 39 RGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA 98 RG E + +D + R+C + +HAL+ V A E A NI VP QY+R I Sbjct: 4 RGFESSMMGKDIDFIPPAMTRLCCLNEISHALAGVMAVEKAYNITVPNEGQYLREIARLG 63 Query: 99 HTTHDHIVHFYQLS-ALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKD 157 + + D DI + +++ K ++ L S + K+ N K+ Sbjct: 64 EIVEVDAIKLREFKNTDDLADIGNKIKSVLGKKAKYLAVGGVLENISDKRKEKLINLAKE 123 Query: 158 LVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQN 217 + F A P+V LI A+ A + + + AL GK + + Sbjct: 124 GLNLVDKD-FVKLVDERKAKIPLPDVELID-AYNFDANKVETNGLPKTALYDGKVVYSGS 181 Query: 218 LAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 LA IN L + R++ I+ ++K+ + + ++ Sbjct: 182 LARMYKEGLINSKNLWDVLSSRMIEIEFCLNKIIELLNKL 221 >UniRef50_Q1KZW7 HupK n=2 Tax=Bradyrhizobium RepID=Q1KZW7_9BRAD Length = 360 Score = 71.8 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 60/192 (31%), Gaps = 46/192 (23%) Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 ++ P G+ E GP A + + G + V Sbjct: 205 TFCHCPDLGGRAPETGPWARQM------------------THERLWLGRSGPVE------ 240 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT---GEFKGVGFLEAPR 479 R+ R L D L G H +P I + G + +E R Sbjct: 241 -RLKARIAEIVRLCDWL-----------KSGAHIDAAEPGIVESYRLGPRRAAAAVECAR 288 Query: 480 GMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H + + G I ++ + P+ WN R GP ++L G + V Sbjct: 289 GRLYHAVELDPQGQIYRFEFLAPTEWNFHRR------GPLVRNLQGAVLTARRHQKAVRA 342 Query: 539 TIHSFDPCMACA 550 I S DPC+ Sbjct: 343 VIDSLDPCLGFT 354 >UniRef50_C0VXU6 Reducing hydrogenase alpha subunit n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU6_9CORY Length = 370 Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%) Query: 376 EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRI--IGRTVHCC 433 E+ PL +++ + G S+ + + + G+ L R+ R Sbjct: 188 ELNPLGDIVGVIRDGSFSSFPVTDWTARVVESCPGSVSPFPLLDGQSYRVGPRARAAFSS 247 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE-----FKGVGFLEAPRGMLSHWMVI 488 D + Y A + + + ++ A G G +++PRG+L H I Sbjct: 248 VDGDTIAELYDAAVAMVELAAKPSLYGDDLRADVSETPVSQTGTGIVDSPRGILVHHYEI 307 Query: 489 -KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCM 547 ++GI++ Q + P+ N P+ + + D + E+ R I DPC+ Sbjct: 308 DENGILTGAQILTPTAQND----------PWLTQM----LTDAHTEEEMERAIRIADPCV 353 Query: 548 ACAVHVVDADGNEVVSVK 565 C V G + VK Sbjct: 354 PC---VSAPPGKMTIKVK 368 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%) Query: 1 MSQRITIDP-VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M++ + ID + E + E E+G ++ R +E ++ + V+ Sbjct: 1 MTETLGIDLDINPFE---AVVVEEEDGTRHFDLSTF--PR-VEHLLIGKPVDVVADSVKM 54 Query: 60 ICGVCTTTHALSSVRAAESALNI-DVPVNAQYIRNIILAAHTT 101 +CG+C +H L+ +RA + +P A +R ++ A Sbjct: 55 LCGICPISHHLAGMRALDQIYGATHLPETALDVRLLLHYASVL 97 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 71.4 bits (173), Expect = 8e-11, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 36/82 (43%) Query: 24 ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNID 83 ++ VV + +G RG E + DA +V RICG C+ H+L+ +A E Sbjct: 26 DDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVARICGECSFAHSLAFCQAIEQVQRRK 85 Query: 84 VPVNAQYIRNIILAAHTTHDHI 105 V A +R I T H+ Sbjct: 86 VGARAALLRVAIAELERTAAHL 107 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 TI+P GH R C E +V G +G+E + + P A + R+ G + Sbjct: 183 TIEP-----GHFRFTCLGEQ-IVQLEERLGYCHKGIERLFVGQPPDAALRLAGRVSGDSS 236 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 +A S A ES I++ A +R + L +H+ L Sbjct: 237 VAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGALG 283 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%) Query: 2 SQRITIDPVT--------RIEGHLRIDCE---IENGVVSKAWASGTM------------- 37 QR I P+T R+ GH + +GV Sbjct: 113 GQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVF 172 Query: 38 --WRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNII 95 RG+E ++ D D ++ +R+ G+ + HAL+ A E + + +R I Sbjct: 173 AKHRGIERRFEDLDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIF 232 Query: 96 LAAHTTHDHI 105 +H+ Sbjct: 233 AELERIANHL 242 Score = 44.0 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 365 VKSPTFYGKTVEVGPLANMLVKLAA-----GRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 +++P+F + GPL L + GR S + + Y + + + + + Sbjct: 320 MQTPSFLDRLRGTGPLDPALARRHGALGPIGRASGFDDDDRWHRPYDEYS-DLPQFPAVS 378 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE---FKGVGFLE 476 S G + R + +I T ++PA + +G+G+ E Sbjct: 379 SGSGDALARLEIRWSEIRSSAELIRQAVAHIAALSAPTAEPADVPAAIDRISGRGIGWAE 438 Query: 477 APRGMLSHWMVIKDGIISN 495 AP+G + + + DG IS Sbjct: 439 APQGEVVYVVECDDGRISR 457 >UniRef50_P31914 Hydrogenase expression/formation protein hoxV n=1 Tax=Ralstonia eutropha H16 RepID=HOXV_RALEH Length = 383 Score = 70.6 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 14/185 (7%) Query: 382 NMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQN 441 L + AG + + +++ + L +A S G + R + +++ Sbjct: 206 RELAQSLAGEADFPCRPSWQGRVFETGSWTRLGLADC-SAFGNMWLRL--GARIAELVLL 262 Query: 442 QYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG----IISNYQ 497 + G+ + ++ A + + + E RG+L HW+ + D +I Y+ Sbjct: 263 SLRDGMQASGEAHDSPCLQMGALALAPGQALAWSEMARGLLMHWVRLVDTPQGPVIGGYR 322 Query: 498 AVVPSTWNSGPRNFNDDVGPYEQSLVGT-PVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 + P+ WN P G L P + + + ++DPC+ V ++ Sbjct: 323 IIAPTEWNFHP------DGAVAHMLAHLAPFDAADVRRSIGILVAAYDPCVPYTVEFAES 376 Query: 557 DGNEV 561 G+ V Sbjct: 377 LGDTV 381 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 42 EEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALN-IDVPVNAQYIRNIIL-AAH 99 E +++ R A ++ R+ +C H +++ A +AL + P A + R A Sbjct: 30 ERLLRGRPGEAAPHLLPRLFALCGEAHGVTAALAVNAALGRVAAPEPALFRRLAHETACE 89 Query: 100 TT 101 Sbjct: 90 HI 91 >UniRef50_C7I139 Ni,Fe-hydrogenase I large subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I139_THIIN Length = 295 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 49/191 (25%) Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 D +V PT G +E GP A + A Sbjct: 134 DATLHFVSQPTHAGACMETGPAAR------------------------HRHHPVVRAAAH 169 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 H LGR+ R V C + + + +GD G+G++++ Sbjct: 170 HGLLGRLAARLVDLCTV-----------LVALKRGDAAAP------PPSAAAGLGWVDSA 212 Query: 479 RGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT-PVADPNKPLEV 536 RG L H + I++Y+ + P+ WNS P+ G Q L G P + Sbjct: 213 RGRLIHHAELDAHQRIAHYRILAPTEWNSHPQ------GLAAQLLAGIGPGTLDAVQKQA 266 Query: 537 VRTIHSFDPCM 547 + + DPC+ Sbjct: 267 RLVVQAIDPCV 277 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +E ++ G + RG+E+I +++ R V ++ L Sbjct: 38 HGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKRYAQFTPWTDRTDYVAAPSNNLGY 97 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 V A E L I+ P AQY R I+ H+V ALD Sbjct: 98 VLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGT-HALD 139 >UniRef50_A7IHD2 Putative hydrogenase expression/formation protein HupK n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IHD2_XANP2 Length = 329 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 14/177 (7%) Query: 379 PLANML------VKLAAGRESTQNKL-NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVH 431 P A +L V A GR ++ A E + S LGR+ + Sbjct: 148 PTARLLAHMRREVDPAEGRAGLPELTAQDVAAALDPARTPGAEGLRETSALGRVAHTPLV 207 Query: 432 CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG 491 L + + L+ + +P G G A RG+L H + ++ G Sbjct: 208 SALLAGEGPSLFVRLLARLVDCLAALKPASAVPTYDLPAGFGIAPAARGLLGHGVRLEAG 267 Query: 492 IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMA 548 ++ Y+ + PS WN P G E++ DP + + +PC+ Sbjct: 268 RVAAYRILSPSAWNLAPG------GLLERAFAAL-TPDPTARRLAPLLVSAINPCVP 317 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R E V+ G +G+ + + R+ +A + RI G +L+ Sbjct: 168 IEPGHFRFSVVGEK-VLRLETRMGYTHKGIARLFRGRNLPEAARLASRISGDSAVATSLA 226 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 +A E AL+I++ +++R I+L +H+ L Sbjct: 227 FSKAVEEALDIEISEGVRFVRAILLERERIANHLADLGALG 267 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 69.8 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +++ V G + RG+E+I +NR V R+ V ++ L Sbjct: 35 HGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRMDYVAAVSNGLGY 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E +++ P AQ++R I+ + H+V ALD + + L E Sbjct: 95 CEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGT-HALD-IGALTPLFYTFRDREE 152 Query: 133 MLK 135 +LK Sbjct: 153 VLK 155 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ V + G + RG E++ ++ + + R+ +C ++ L+ Sbjct: 32 HGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLCPPSNNLAF 91 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 A E L I+ P+ AQYIR ++ H++ L Sbjct: 92 ALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R + +++ G + +G+E ++++ + + RI G T HA + Sbjct: 188 IEPGHFR-FLAVGEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDSTVAHAWA 246 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 +A E A IDVP A +IR I+ +HI Sbjct: 247 FAQACEYAGQIDVPRRASFIRAILCERERIANHI 280 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%) Query: 19 IDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAES 78 + I G++ R ME + ++ +R+ G+ + HAL+ +A E Sbjct: 194 LFFYIGEGILHYHPRLFYKHRAMEGRFQGATLATGAVLAERVSGIDSVAHALAFAQAVEG 253 Query: 79 ALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 A+ P A+Y+R ++ ++H+ + LS Sbjct: 254 AMGWRAPPRARYLRVVLAELERLYNHLHYLGHLS 287 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 69.5 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRI--CGVCTTTHAL 70 G +R +E + K A+ G + RG+E++ ++ + R+ G HAL Sbjct: 184 HGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNESLTYPQTLALTDRLDYLGAHQNRHAL 243 Query: 71 SSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 E A+ I+V +YIR I+ H++ + L+ Sbjct: 244 --CMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAM 284 >UniRef50_A2SJN2 HupK protein n=2 Tax=Burkholderiales RepID=A2SJN2_METPP Length = 388 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 48/190 (25%) Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 +V+ P + G E GP + N +L S Sbjct: 228 FVRQPLWRGACAETGPWNRL---------------------------NRPAGPRLDSPRL 260 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R+ R L + + + ++ A G + + + E RG+L Sbjct: 261 RLGARLAEAVRLA----------LPDGARRSGAQWLASGSLALGPGEALAWAEMARGLLV 310 Query: 484 HWMVIKDG----IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA-DPNKPLEVVR 538 H + + + + + + + P+ WN P G +L P + EV Sbjct: 311 HHVRLDNQGDAARVDSCRVLAPTEWNFHP------AGALAAALERLSAEVAPTRQREVAL 364 Query: 539 TIHSFDPCMA 548 + ++DPC+ Sbjct: 365 LMAAYDPCVP 374 >UniRef50_A1KC58 Putative hydrogenase expression/formation protein HupK n=1 Tax=Azoarcus sp. BH72 RepID=A1KC58_AZOSB Length = 368 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 48/197 (24%) Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + +PT E GPLA + L L +A+ Sbjct: 213 FCSAPTEGSNAAETGPLAR----------------------HAHLPVVALLLARHRRIAA 250 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R++ + + + + T PA G G+ ++ RG L Sbjct: 251 RLLAKVIDVADCG-----------ARLAGAPGTPLADAIAPAPG--LGLACVDTARGTLL 297 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP-NKPLEVVRTIHS 542 H + ++ G I++Y+ P+ W+ P G + + G AD L + S Sbjct: 298 HGVRVEAGRIADYRICAPTDWHFHPG------GAFVGEVKGRHAADEAGTRLRLHALALS 351 Query: 543 FDPCMAC------AVHV 553 DPC+A +VH Sbjct: 352 LDPCVAFELSVEDSVHA 368 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G L+++ E+ + +A G + RG+E+++++R ++ V + + L+ Sbjct: 19 HGVLQVELELSGERIERAKPILGYLHRGIEKLMESRTYAQCLPYTDKLDYVSSMNNNLAW 78 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQL 111 A E I VP+ A+Y+R I + H+V L Sbjct: 79 CTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTL 117 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 21/207 (10%) Query: 35 GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI 94 R ME + A ++ +R+ GV + H L+ +A E+AL P+ AQ R + Sbjct: 196 FYKHRAMEARFEGVPISAACVLAERVSGVDSVAHVLAFSQAMEAALGWQAPLRAQAWRVV 255 Query: 95 ILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNK 154 + ++H+ F L+ T ++ + W E+ ++ + Sbjct: 256 LAELERLYNHLQFFGHLA--------------KTTTLKVAEAEGIWL---EEQVKQINGR 298 Query: 155 IKDLVASGQLGIFANGYWGHPAMKLPPEVNLI--AVAHYLQALECQRDANRVVALLGGKT 212 + + + A L ++N + + YL L R + L G Sbjct: 299 LTGSRFLRGVIVPGGLRRDLDATALIADLNALQPQIEDYLDTLANTRSYLDRL-LTTGVL 357 Query: 213 PHIQNLAVGGVANPINLDGLGVLNLER 239 P G PI +L R Sbjct: 358 PRQVAF-DQGATGPIERASDLDRDLRR 383 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 68.3 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 2/113 (1%) Query: 14 EGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ + + G + G E+ +++R R+ + + +H L+ Sbjct: 41 HGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRTYTQCITYTPRMDYLHSFSHDLAY 100 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 + E + VP AQ IR ++ H+V LD+ +T A Sbjct: 101 ALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGT-GLLDFGALTPFFYA 152 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 15 GHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH-ALSS 72 GH+RI ++ ++ G + R +E++ +NR+ +V+R + + H L Sbjct: 40 GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERP-AILDSIHMNLGY 98 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 + A E L +DVP AQY+R+ + H+ LS Sbjct: 99 IIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILS 138 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ ++ KA G + RGME++ +N + R+ + ++ + Sbjct: 35 HGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAENMIYNEFMPTTDRMDYIASSANNYGF 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 A E + ++VP A+ IR ++L + H+ Sbjct: 95 ALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWL 130 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 67.9 bits (164), Expect = 9e-10, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 17/119 (14%) Query: 11 TRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTT-H 68 T + G LR+ E++ + + G + R E++ + R+ C+ + Sbjct: 186 TAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLN-YCSAPMN 244 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV--------------HFYQLSA 113 + +A E L +++P AQ +R I+ DH + FY Sbjct: 245 NIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFFYMFGM 303 >UniRef50_Q0A725 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A725_ALHEH Length = 379 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%) Query: 449 NIGKGDHTTFVKPNIPATGE--FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNS 506 + V+P G+ G G ++ RG+L HW+ + G +++Y V P+ WN Sbjct: 276 RLRNALRAIGVEPVSEEVGQVTGTGCGIVDTARGLLLHWVRLHRGQVADYAVVAPTEWNF 335 Query: 507 GPRNFNDDVGPYEQSLVGTPVADPNKPLE--VVRTIHSFDPCMACAVHV 553 PR G L P P + + + + +PC+ V V Sbjct: 336 HPR------GVLVSGLRERPGGGPAEGVRRLAELAVLALNPCVGSRVEV 378 >UniRef50_A4JRG2 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JRG2_BURVG Length = 417 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 28/144 (19%) Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 A S R+ R L G ++ A + + + Sbjct: 271 AAAYDSAWLRLGARVAELARLA--------------AGGPAAFALRSGALALAPGEALAW 316 Query: 475 LEAPRGMLSHWMVIKDG---IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV---- 527 E RG+L HW+ + G +++Y+ P+ WN P G +L V Sbjct: 317 CETARGVLIHWVRLVPGDAARVADYRVASPTEWNFHP------DGTLAHALARVDVRPDG 370 Query: 528 -ADPNKPLEVVRTIHSFDPCMACA 550 D V + +FDPC+A A Sbjct: 371 GGDAGLAARVGALMGAFDPCIAYA 394 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R C E V G RG+E +++ R + + + I G H L+ Sbjct: 177 IEPGHFRFQCHGE-RVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESIAGDTAVGHGLA 235 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 +A ES + A +R I L +H+ L+ Sbjct: 236 YAKAVESLAGVAPTARAMSLRGIGLELERIANHVGDLGALAG 277 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Query: 16 HLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI--CGVCTTTHALSSV 73 H R+ E E + G + RG+E++ ++ + +R+ G HAL Sbjct: 216 HFRVALEGE-RIRKIDPILGYIHRGIEKLNESLTYPQTLALTERLDYLGAMQNRHAL--C 272 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 E A I+V QYIR I+ HI+ F L Sbjct: 273 MCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLC 311 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 67.5 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 17/104 (16%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ V A G M RG E++ + RD R ++ R H S Sbjct: 40 HGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANR--------HDWLS 91 Query: 73 --------VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 V A E L ++VP A ++R + + +H++ Sbjct: 92 AFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFL 135 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 17 LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 LR+ +++ V A G + G E+I ++ D + R+ + + ++ A Sbjct: 33 LRLVLKLDGERVVDAVPDIGYLHSGFEKIGEHLDFNQYVTVTDRMNYISPMANNVAWHGA 92 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 E + I++ +YIR II DH++ Sbjct: 93 VEKLMGIEITPRCKYIRTIICELARISDHLL 123 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LRI E+E +++KA G + RG E+I +N R+ + + ++ Sbjct: 54 HGVLRIQMELEGEILTKADPIIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNMAY 113 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 V A E + VP Q IR I H++ Sbjct: 114 VIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFGL 154 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 21 CEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESA 79 +++ V + G + RG+E++ +N + + R+ + + V AAE Sbjct: 221 FDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPYTDRMDYIAAINENHAYVLAAEKM 280 Query: 80 LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 L I+VP A++IR ++ + H++ + Sbjct: 281 LGIEVPEKAKWIRTMMAELSRINSHLLWLGTYAL 314 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Query: 13 IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 IE GH R C E V+ G RG+E+++ + +I + I G + H LS Sbjct: 163 IEPGHFRFQCAGE-EVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIAGDTSIGHGLS 221 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPT 128 +A E I V A+ IR L +HI L+ + +A Sbjct: 222 MCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIR 278 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 2/148 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +++ V K G + G E+ ++R + R + H L+ Sbjct: 41 HGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGVTYAPRTDYLHCFGHELAY 100 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V + E + VP A IR I+ H H+V LD +T A K S Sbjct: 101 VLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGT-GLLDLGALTPFFYAFREKESC 159 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVA 160 + + F +V +D+ Sbjct: 160 VDLFEEATGYRMNQGFFRVGGLSRDVPE 187 >UniRef50_A0P1N1 Ni,Fe-hydrogenase I large subunit n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1N1_9RHOB Length = 353 Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 22/153 (14%) Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV 459 + + ++ + L + R + R V L ++ + Sbjct: 219 DATSYVRRASDPLLASLGAPAIGARFVARLVELARLPGEIRGVL---------------I 263 Query: 460 KPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 G G +EA RG L HW +++G + Y+ V P+ N G Sbjct: 264 GETSAPAPLASGRGEVEAARGPLLHWARVEEGRVREYRIVPPTACNFA------RQGIAS 317 Query: 520 QSLVGTPVAD-PNKPLEVVRTIHSFDPCMACAV 551 + L D + L +++ DPC+A V Sbjct: 318 RCLEEIAAMDREEQQLCAHLVVNAVDPCVAYEV 350 Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 43 EIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH 102 ++ + P + I+ + GVC T +SV A E AL I P R + Sbjct: 31 RLMIGKTPEEVLKIIPLVHGVCATAQTHASVLALEGALGIKPPKQTLSARQTLTMMECLR 90 Query: 103 DHIV 106 +H++ Sbjct: 91 EHVL 94 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 654 0.0 UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 553 e-156 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 541 e-152 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 538 e-151 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 537 e-151 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 535 e-150 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 520 e-146 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 519 e-145 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 514 e-144 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 512 e-143 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 507 e-142 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 506 e-142 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 506 e-142 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 506 e-141 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 485 e-135 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 484 e-135 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 481 e-134 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 478 e-133 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 477 e-133 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 473 e-132 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 465 e-129 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 459 e-127 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 443 e-123 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 432 e-119 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 430 e-119 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 428 e-118 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 411 e-113 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 411 e-113 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 389 e-106 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 384 e-105 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 378 e-103 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 374 e-102 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 373 e-101 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 371 e-101 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 371 e-101 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 370 e-101 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 367 e-100 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 366 1e-99 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 363 9e-99 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 358 2e-97 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 358 4e-97 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 356 1e-96 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 354 4e-96 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 353 8e-96 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 349 1e-94 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 349 2e-94 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 349 2e-94 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 344 6e-93 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 342 3e-92 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 339 2e-91 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 336 1e-90 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 332 2e-89 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 331 6e-89 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 330 7e-89 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 326 1e-87 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 304 5e-81 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 300 1e-79 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 299 2e-79 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 298 4e-79 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 295 4e-78 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 290 9e-77 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 288 3e-76 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 288 5e-76 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 286 2e-75 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 285 4e-75 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 284 6e-75 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 284 6e-75 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 279 2e-73 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 276 1e-72 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 272 2e-71 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 272 3e-71 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 271 6e-71 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 268 3e-70 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 268 4e-70 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 268 5e-70 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 267 9e-70 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 259 2e-67 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 258 5e-67 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 256 1e-66 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 255 3e-66 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 255 4e-66 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 253 1e-65 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 253 2e-65 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 251 5e-65 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 250 7e-65 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 240 1e-61 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 238 6e-61 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 235 5e-60 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 234 9e-60 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 234 1e-59 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 229 2e-58 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 228 3e-58 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 222 3e-56 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 221 7e-56 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 220 1e-55 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 216 2e-54 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 216 2e-54 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 205 3e-51 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 202 3e-50 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 201 6e-50 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 200 1e-49 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 198 5e-49 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 197 1e-48 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 193 2e-47 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 182 2e-44 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 180 1e-43 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 170 2e-40 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 167 9e-40 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 160 1e-37 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 159 3e-37 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 157 9e-37 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 156 2e-36 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 153 2e-35 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 153 2e-35 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 152 3e-35 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 152 4e-35 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 152 4e-35 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 149 3e-34 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 149 3e-34 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 146 2e-33 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 146 3e-33 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 145 4e-33 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 145 5e-33 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 145 6e-33 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 141 5e-32 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 141 6e-32 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 139 3e-31 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 138 4e-31 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 138 7e-31 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 137 1e-30 UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8... 135 6e-30 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 134 8e-30 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 132 4e-29 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 131 5e-29 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 131 6e-29 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 131 8e-29 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 131 9e-29 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 130 1e-28 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 129 2e-28 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 129 3e-28 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 129 3e-28 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 129 3e-28 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 129 4e-28 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 128 8e-28 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 127 9e-28 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 127 1e-27 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 126 2e-27 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 126 2e-27 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 126 3e-27 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 126 3e-27 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 125 4e-27 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 124 8e-27 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 124 8e-27 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 124 8e-27 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 124 9e-27 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 124 1e-26 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 123 1e-26 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 123 1e-26 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 123 2e-26 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 123 2e-26 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 123 2e-26 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 122 4e-26 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 122 4e-26 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 121 6e-26 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 121 7e-26 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 121 8e-26 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 121 9e-26 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 120 1e-25 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 120 1e-25 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 120 2e-25 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 120 2e-25 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 120 2e-25 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 119 2e-25 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 119 3e-25 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 118 4e-25 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 118 4e-25 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 118 5e-25 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 118 6e-25 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 118 8e-25 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 118 8e-25 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 117 1e-24 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 117 2e-24 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 116 2e-24 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 116 2e-24 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 116 2e-24 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 116 2e-24 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 116 2e-24 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 116 2e-24 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 116 3e-24 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 116 3e-24 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 115 4e-24 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 115 4e-24 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 115 6e-24 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 115 6e-24 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 115 6e-24 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 115 6e-24 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 114 7e-24 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 114 7e-24 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 114 8e-24 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 114 9e-24 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 114 9e-24 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 114 1e-23 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 114 1e-23 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 113 2e-23 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 113 2e-23 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 112 4e-23 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 112 4e-23 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 112 5e-23 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 111 5e-23 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 111 5e-23 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 111 6e-23 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 111 6e-23 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 111 7e-23 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 111 8e-23 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 111 1e-22 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 110 1e-22 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 110 1e-22 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 110 1e-22 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 110 2e-22 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 110 2e-22 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 110 2e-22 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 109 2e-22 UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodom... 109 2e-22 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 109 2e-22 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 109 3e-22 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 109 4e-22 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 109 4e-22 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 108 5e-22 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 108 6e-22 UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment... 108 6e-22 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 108 7e-22 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 108 8e-22 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 108 8e-22 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 108 9e-22 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 107 1e-21 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 107 1e-21 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 107 1e-21 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 106 2e-21 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 106 2e-21 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 106 3e-21 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 105 4e-21 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 105 4e-21 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 105 4e-21 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 105 4e-21 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 105 4e-21 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 105 5e-21 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 105 5e-21 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 104 6e-21 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 104 7e-21 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 104 1e-20 Sequences not found previously or not previously below threshold: >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 567/567 (100%), Positives = 567/567 (100%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI Sbjct: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT Sbjct: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP Sbjct: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP Sbjct: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG Sbjct: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS Sbjct: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG Sbjct: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI Sbjct: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 Query: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 HSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 553 bits (1424), Expect = e-156, Method: Composition-based stats. Identities = 251/592 (42%), Positives = 355/592 (59%), Gaps = 38/592 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DP+TRIEGH+R + I + V++ A + GTM+RG+E I++ RDPRDAW V+RI Sbjct: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLP Sbjct: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG---LGVLNL 237 PE NL+ AHYL+AL+ QR+ ++ A+ GGK PH N VGG+ IN+D +G +N+ Sbjct: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNM 254 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVN--YLSVPEFPT---DS 292 ERL ++S I + +DF+ V D I F W G G + LS FP D Sbjct: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTT 349 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 315 GEKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGIT 370 Query: 350 IPAYDG------------WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 P Y+ ++ +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 371 DPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 ++ +++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 431 VDRMMSALN------LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 Query: 458 FVKPNIPA---TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD 514 E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ Sbjct: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 Query: 515 VGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 541 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 259/579 (44%), Positives = 351/579 (60%), Gaps = 30/579 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS R+ IDPVTRIEGHLRI+ E+E V A++SGTM RG+E I+K RDPR+AW QRI Sbjct: 1 MS-RLVIDPVTRIEGHLRIEAELEGNRVKSAYSSGTMVRGIEIILKGRDPREAWAFAQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTT HA +S+RA E AL I VP NA IR +++ HDH+VHFY L ALDWV+ Sbjct: 60 CGVCTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPI 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+ADP K SE+ + +S + +SP F +VQ+KI+ V QLGIF+ GYW HP +LP Sbjct: 120 QALKADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLP 179 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NL+AVAHYL AL Q +V + GGK PH N VGG+A PI+L +N+++L Sbjct: 180 PEANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHP-NFVVGGMACPIDLQSDTAINMDKL 238 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD-SKNGSFLF 299 IKS ID + +FVE+VY D IA+FY +W +G+G N+L + E D + G F Sbjct: 239 GRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVLGEPEGDSHREGKFFI 298 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI----- 350 P +I + +L +Y + I+E HS+YK DE P+EG T+ Sbjct: 299 PPTFIRDRNLENYEDV-------DYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYTG 351 Query: 351 --PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 P Y + +GKYSW+K+P + G EVGPLA +L A + +N ++ Sbjct: 352 PEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSYLSKL--- 408 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPAT-- 466 L V L+ST+GR + R + +++ Y L+ N+ GD TTF + Sbjct: 409 ---GLPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTW 465 Query: 467 -GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 + KG+G +EAPRG LSHW+ IKDG I+NYQAVVP+TWN PR+ PYE SLVG Sbjct: 466 EKDAKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGH 525 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 + +P +PLE++RTIHSFDPC+ACAVH+ + ++ + Sbjct: 526 ELVNPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 251/595 (42%), Positives = 355/595 (59%), Gaps = 40/595 (6%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DPVTRIEGHLR + I ++ V++ A + GT++RG+E I+K RDPRDAW +RI Sbjct: 16 GRRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAFTERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT THAL+SV A E+AL ID+P NA IRN++ HDH+VH Y L+ LDWVD+ Sbjct: 76 CGVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHLYHLTGLDWVDVV 135 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SA +ADP SE+ + +S W +SP F V++K+ L+ S QLGIF NGYWGHPA KL Sbjct: 136 SASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLGIFTNGYWGHPAYKLS 195 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV---LNL 237 PE NL+ VAHY++AL+ Q+D + + GGK PH N VGGV +N+DG+G +N Sbjct: 196 PEANLMVVAHYIEALDFQKDVVHIHTIFGGKNPHP-NWLVGGVPCSLNIDGVGAADVINQ 254 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAV--NYLSVPEFPT---DS 292 ERL ++ I++ F +QV DT +A FY +WL G G + L+ P D Sbjct: 255 ERLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLSVLAYGGIPDIANDY 314 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGT 348 S L P G I N + + P++ + IQE+ HSWYK + PWEG Sbjct: 315 TENSLLMPPGAIINGNFNEVLPVS----LTNPEEIQETVNHSWYKPYPAGKTGLHPWEGI 370 Query: 349 TIPAYDGWS-------------DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQ 395 T P Y+ + +YSW+K+P + G +EVGPLA ML+ A + + Sbjct: 371 TEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLIGYARKNDDIK 430 Query: 396 NKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG-- 453 +++ + + V L STLGRI R++ + ++ Y LITN+ G Sbjct: 431 GLVDDFLG-----RAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNLKNGVR 485 Query: 454 --DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNF 511 +TT KP TGE +GVGF EAPRG L HW+ I+D I +YQ VVP+TWN PR+ Sbjct: 486 ATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNGAPRSP 545 Query: 512 NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + + YE SL+ T +A P +PLE++RT+HSFDPC+AC+ H++ DG ++++V++ Sbjct: 546 DGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 537 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 242/566 (42%), Positives = 335/566 (59%), Gaps = 26/566 (4%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 I +DPVTRIEGHLRI+ E+ENG V A++S T++RG+E I+K RDPRDA QR CGVC Sbjct: 25 IVVDPVTRIEGHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVC 84 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 T THAL+S R ++A+ + +P NA YIRN++L A HDHIVHFY L ALD+VD+T+AL+ Sbjct: 85 TYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALK 144 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMKLPPE 182 ADP KA+++ +S + + VQ+K+K V SGQLG F N Y+ GHPA L PE Sbjct: 145 ADPAKAAKVASSISP-RKTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDPE 203 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 NLIA AHYL+AL Q A R +A+ G K PH Q VGGV L +R+ Sbjct: 204 TNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC------YDALTPQRIAE 257 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN-GSFLFPG 301 ++ + FV++VY D V+AA Y +W G G N+++ EFP D + S F Sbjct: 258 FEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG-GTDNFITFGEFPKDEYDLNSRFFKP 316 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + +P + I+E +HSWY+ + PW+G T P Y D + Sbjct: 317 GVVFKRDFKNIKP-------FDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDR 369 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+K+P + G+ +E GPLA +L+ + G + + ++A + L ST Sbjct: 370 YSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKL------GVGPEALFST 423 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 LGR R + + + + NI KGD+ +P + +GVGF+ APRG Sbjct: 424 LGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMP--KQAEGVGFVNAPRGG 481 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 LSHW+ I+DG I N+Q VVPSTW GPR + + P E SL+GTPVAD +P+E++RT+H Sbjct: 482 LSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVH 541 Query: 542 SFDPCMACAVHVVDADGNEVVSVKVL 567 SFDPC+AC VHV+D NEV ++L Sbjct: 542 SFDPCIACGVHVIDGHTNEVHKFRIL 567 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 265/629 (42%), Positives = 360/629 (57%), Gaps = 75/629 (11%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + R+ +DP+TRIEGHLRI+ E++ + +A++SGT RG+E I++ RDPRDAW QRIC Sbjct: 7 NNRLVVDPITRIEGHLRIEAEMDGNTIKQAFSSGTSVRGIELILQGRDPRDAWAFAQRIC 66 Query: 62 GVCTTTHALSSVRAAESA------------------------------------------ 79 GVCT H ++SVRA E A Sbjct: 67 GVCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSI 126 Query: 80 -----LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEML 134 + +P NAQ IRNI++A HDH++HFY L ALDWVD+ SAL ADPT+ + + Sbjct: 127 GVLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLA 186 Query: 135 KGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQA 194 +S + +SP F V+ K+K LV SGQLGIF+N YWGHP KLPPEVNL+A+AHYL A Sbjct: 187 GQLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDA 246 Query: 195 LECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFV 254 L QR+ +V + GGK PH N VGGV +PINL+ +N RL+ ++ I ++ FV Sbjct: 247 LTWQREVVKVHTIFGGKNPHP-NFVVGGVPSPINLNASTGINTSRLVQLQDAITQMKSFV 305 Query: 255 EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD--SKNGSFLFPGGYIENADLSSY 312 +QVY D IA +Y EW TRG+G N+L+ + P SFLFP G I DLS Sbjct: 306 DQVYYPDIVAIAGYYKEWGTRGEGLGNFLTYGDLPMTSMDDPDSFLFPRGAILGRDLSKV 365 Query: 313 RPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI-------PAYDGWSDDGK 361 + D IQE SWY+ + + P+ G T P Y + + Sbjct: 366 HDL----DLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYTGPKPPYKHLNVGAE 421 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW+KSP + G +EVGPLA +L+ A + Q+ +N ++I LE + L ST Sbjct: 422 YSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILD------LETSALFST 475 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG---EFKGVGFLEAP 478 LGR + R V + + LQ+ Y L+ NI KGD TF T + +GVG +EAP Sbjct: 476 LGRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQGVGVMEAP 535 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTP-VADPNKPLEVV 537 RG L HW+V+++G I NYQ VVP+TWN+GPR+ N G YE +L + DP++PLE++ Sbjct: 536 RGALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLEIL 595 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVKV 566 RT+HSFDPC+ACAVHV+D G E + +KV Sbjct: 596 RTLHSFDPCLACAVHVMDETGEERLRLKV 624 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 241/574 (41%), Positives = 334/574 (58%), Gaps = 32/574 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + I +DP+TRIEGHLRI E+ENG V AW+S ++RG+E I+K RDPRDA QR C Sbjct: 13 TGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRAC 72 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HAL+S R + A+ + +P NA+ +RN+++A+ HDH+VHFY L ALDWVD+T+ Sbjct: 73 GVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTA 132 Query: 122 ALQADPTKASEMLKGVSTW-HLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GHPAMK 178 AL+ADP KA+++ ++ NS + VQ+K+K V SGQLGIF N Y+ GH A Sbjct: 133 ALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYY 192 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 LPPEV+LIA AHYL+AL Q A +A+LGGK PH Q VGG +N L + Sbjct: 193 LPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSN------YQGLTKD 246 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN---- 294 L + ++ FV + Y D +A FY +W G G NYL+ EF TD + Sbjct: 247 PLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG-GTSNYLAFGEFATDDSSPEKH 305 Query: 295 -GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPA 352 + FP G I DL D + I E K+SWY + P++G T P Sbjct: 306 LATSQFPSGVITGRDLGKV-------DNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPK 358 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 Y D YSW+K+P + GK +EVGPLA + A G+ + ++ ++ + Sbjct: 359 YTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKL------S 412 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 + LHSTLGR R + + ++ + + K D+T K +P E KGV Sbjct: 413 VPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAK-DNTLCAKWEMPE--ESKGV 469 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G +APRG LSHW+ IK I N+Q VVPSTWN GPR D P E++L+GTP+ADP + Sbjct: 470 GLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKR 529 Query: 533 PLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+E++RT+H+FDPC+AC VHV++ + NE++ KV Sbjct: 530 PVEILRTVHAFDPCIACGVHVIEPETNEILKFKV 563 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 243/596 (40%), Positives = 335/596 (56%), Gaps = 50/596 (8%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + I +DP+TRIEGHLRI+ I EN + AW+S TM+RG+E I+K RDPRD ++ RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH S+ A E A I +P NA+ +RN+I A HDH+VHFY L ALD+VD+ S Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 122 ALQADPTKASEMLKGVSTWHLNSPE-----EFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 A +A+PT + + + + P +F VQ++I V G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 KL PE NLI VAHYL+AL+ QRD ++ A+ GGK PH Q++ VGGV ++ N Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK-----N 275 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAV-----------NYLSV 285 R+ K + + ++F++ Y D + Y + T + +Y+S Sbjct: 276 PARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSYMSY 335 Query: 286 PEFPTDS---KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-AP 341 +F D N LFP G + + D+S + I E HSWY+ AP Sbjct: 336 GDFRLDDTGFYNSEMLFPSGLVLDGDISKALDV-------DPNKITEDVTHSWYEGTGAP 388 Query: 342 QAPWEGTTIPAYDGWSDDG----------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGR 391 + P+EGTTIP Y G KYSW+KSP + GK VEVGPLA M++ G Sbjct: 389 EHPYEGTTIPKYTGLEKKADGYSYLKTEEKYSWIKSPLYDGKKVEVGPLARMVIGYVKGD 448 Query: 392 ESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIG 451 + + + L V L ST+GR R + + D++ L N Sbjct: 449 KRITKYVGNFLKRAN------LPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAA 502 Query: 452 KGDHTTFVKPNIPA-TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRN 510 GD +T+ + + + + KG+G EAPRG L HW+ +K+G + NYQAVVPSTWN+GPR Sbjct: 503 SGDLSTWTEFDFDKVSVDTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRG 562 Query: 511 FNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++G YE SL+GT VA+P +PLE++RTIHSFDPC+ACAVHVVD G E+ KV Sbjct: 563 PKGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 252/608 (41%), Positives = 350/608 (57%), Gaps = 48/608 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +RI +DPVTRIEGH+R + ++ N V+ A ++GTMWRG+E I+K RDPRDAW V+RI Sbjct: 15 GRRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFVERI 74 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCT HAL+SVRA E+AL+I +P NA IR I+ HDH VHFY L ALDWVD+ Sbjct: 75 CGVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHFYHLHALDWVDVM 134 Query: 121 SALQADPTKASEMLKGVST-WHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 SAL+ADP + SE+ + VS L+S F +QN++K V SGQLG F NGYWG A L Sbjct: 135 SALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGPFMNGYWGSKAYVL 194 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV----L 235 PPE NL+AV HYL+AL+ Q++ ++ + GGK PH L VGGV INLDG+G + Sbjct: 195 PPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYL-VGGVPCAINLDGIGAASAPV 253 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE---WLTRGKGAVNYLSVPEFPTDS 292 N+ERL ++K+ ID++ +F + VY D I Y + G A N L E+P + Sbjct: 254 NMERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAATNVLDYGEYPNVA 313 Query: 293 KNGSFL-FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGT 348 N S PGG I N + P+ D + +QE HSWYK + PW+G Sbjct: 314 YNKSTDQLPGGAILNGNWDEVFPV----DPRDSQQVQEFVSHSWYKYADESVGLHPWDGV 369 Query: 349 TIPAY-------------DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE--S 393 T P Y + + KYSW+KSP + G +EVGPL+ ++ A R Sbjct: 370 TEPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYILAYAHARSGNK 429 Query: 394 TQNKLNEIVAIYQKLTGNTLEVAQL------------HSTLGRIIGRTVHCCELQDILQN 441 + E + ++ + + A ST+GR + R + +++ + Sbjct: 430 YAERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALESQYCGEMMHS 489 Query: 442 QYSALITNIGKGDHTTFVKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQA 498 + L+ NI GD T + KGVG + APRG L HW+ IKDG I NYQ Sbjct: 490 DWHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRIKDGRIENYQC 549 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADG 558 VVP+TWN PR++ +G +E SL+ TP+ +P +P+E++RT+HSFDPC+AC+ HV+ A+G Sbjct: 550 VVPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLACSTHVMSAEG 609 Query: 559 NEVVSVKV 566 E+ +VKV Sbjct: 610 QELTTVKV 617 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 242/577 (41%), Positives = 330/577 (57%), Gaps = 36/577 (6%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + +DPVTRIEGHLR++ +ENG + +S ++RG+E I+K RDPRDA QR CGVC Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKIIDVRSSSQLFRGLEIILKGRDPRDAQHFTQRSCGVC 77 Query: 65 TTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 T THAL+SVR ++A+ +D +P NA IRN++LAA HDH+VHFY L ALD+VD+++ Sbjct: 78 TYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSAC 137 Query: 123 LQADPTKASEMLKGVS------TWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW--GH 174 L AD KA+EM GV+ ++S + K ++ +K +V SG+LGIF N Y+ GH Sbjct: 138 LNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGGH 197 Query: 175 PAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV 234 PA LPPEVNLIA HYL+AL Q A R +A+ G K PH Q +GGV Sbjct: 198 PAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVTC------YEG 251 Query: 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT---D 291 L + + + ++ DFV Y D +A FY +W G G N++S EFP + Sbjct: 252 LTDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIG-GTTNFMSCGEFPVPGGE 310 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 + S G I N +L + I E KHSWYKD A Q P+ G T P Sbjct: 311 TDLTSRYVKPGVIMNRNLGQVDAL-------DPSKIAEHVKHSWYKDGAAQHPYNGVTDP 363 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 Y D KYSW+K+P + GK VEVGPLA LV G + ++ ++ Sbjct: 364 MYTSLDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEFKTYVDFVLKAL------ 417 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 + L STLGR R + C + + L N+ KGD ++PA+ +G Sbjct: 418 GVGPEALFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDICKDWDMPAS--AQG 475 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV-GTPVADP 530 VG++ APRG LSHW+ IKD I N+Q VVPSTWN GPR ND GP E++L+ TP+ADP Sbjct: 476 VGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGPLEEALLDNTPIADP 535 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 +P+E++RT+HS+DPC+AC VHV+D V ++L Sbjct: 536 ERPVEILRTVHSYDPCIACGVHVIDNKTGNVKKFRIL 572 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 507 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 237/588 (40%), Positives = 338/588 (57%), Gaps = 43/588 (7%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M++RI +DP+TRIEGHLRI+ + EN V+ A+++ T+WRG+E I+K RDPRDA QR Sbjct: 1 MTKRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICGVCT +H + + A E+AL I P+NA+ IR+++ + HDH VHFY L LDW DI Sbjct: 61 ICGVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDI 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEE-FTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 TSAL+ADP AS++ S + + + T VQ ++ + A G LG FAN YWGH + Sbjct: 121 TSALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYR 180 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 PE NLI ++HYL+ALE QR A +++A+ G K PH Q+L VGGV + ++ L+ Sbjct: 181 FSPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTSVMDA-----LDPS 235 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR--GKGAVNYLSVPEFPTDSKNGS 296 RL + ++DFV + Y D + A + + G N+ S E P + Sbjct: 236 RLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYSYQEIPLNKTE-- 293 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 +++ G + + D++ I I E A H+WYK+ P++G P Y G+ Sbjct: 294 WMYSTGIVMDGDITKVHEINEDL-------ITEEATHAWYKENKALHPYDGQQDPNYTGF 346 Query: 357 SDD------------------GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 D GKY+W+K+P + GK +EVGPLA ++V LAA + Sbjct: 347 KDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRIEKVA 406 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 + + L +A L +TLGR R + C D +++LI N+ K D +T+ Sbjct: 407 TQFLK------DTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANL-KVDQSTY 459 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 I E+KG PRG+LSHW+ IK+G+I NYQAVVPSTWN+GPR+ N GPY Sbjct: 460 TTYKIDKNKEYKGRYMGTVPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGPY 519 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 E SLVG + D ++PLE++R IHSFDPC+ACAVHV+D GNE+ +V Sbjct: 520 EASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 244/584 (41%), Positives = 332/584 (56%), Gaps = 35/584 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI IDP+TRIEGHLRI+ E E G + AWA T +RG+E+I++ RDPRDAW QRIC Sbjct: 3 TERIVIDPITRIEGHLRIELEAEGGRIGNAWACATQFRGIEKILEGRDPRDAWAFAQRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT HA++S+RA E A+ +P +A+ IRN++ T DH++HFY L ALDWVD+ S Sbjct: 63 GVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVDVMS 122 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL ADP S + VS W NS F +VQ ++ A G LGIFA+GYWGHPA +LPP Sbjct: 123 ALAADPAATSRLAASVSPWPNNSVSWFKEVQQRV-ATSAKGGLGIFASGYWGHPAYRLPP 181 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 E NL+AVAHYL+AL+ QR+ ++ + GK PH L VGG+A INLD +N RL Sbjct: 182 EANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYL-VGGMATSINLDNQLTINKVRLD 240 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPE--FPTDSKNGSFLF 299 + I + FV++VY D IA FYPE+ + G + ++V E F Sbjct: 241 QLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTPAGKPV 300 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEGTTIPAYD- 354 G + + D + P + + + E +WY D PW+G T P Y Sbjct: 301 AAGLLMDGDYRTPHP-------FNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPHYTG 353 Query: 355 ------GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 SD KY+W K+ + G+ V+VGP A +++ A G T N + I + Sbjct: 354 PKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANRDLGILKA- 412 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK---PNIPA 465 V L+STLGR R + L ++ ++AL I GD +TF Sbjct: 413 -----GVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPESW 467 Query: 466 TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG- 524 + +G+GF+EA RG LSHW+ I +G IS YQ VVPSTWNS R+ N +GPYEQ+L G Sbjct: 468 PKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQALAGD 527 Query: 525 --TPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+ D +P+EV+RTIHSFDPC++CAVH++ G VKV Sbjct: 528 KKHPLVDAKRPVEVLRTIHSFDPCLSCAVHML-IPGGPAFEVKV 570 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 244/584 (41%), Positives = 340/584 (58%), Gaps = 32/584 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S R+ IDPVTRIEGHLR++ E +GV+ AW S T +RG+E I RDPRD W V+RIC Sbjct: 12 SSRVVIDPVTRIEGHLRVEMEAGDGVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVERIC 71 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT THA++++ A E AL VPV A+ +R+++ A DH++HFYQL A+DWVD+ S Sbjct: 72 GVCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVDVMS 131 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 AL+ADP + + + K +S W L+S F VQ K+KD +A GQ IF NGYWGHPA KLPP Sbjct: 132 ALKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYKLPP 191 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 EVNL+ VAHYLQAL QRD ++ +LGGK PH N VGG+A IN++ +N L Sbjct: 192 EVNLLGVAHYLQALVWQRDMIKIHTILGGKNPHP-NFLVGGMACAINMNNDQAINQFSLS 250 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP---EFPTDSKNGSFL 298 Y+K + DF+ +VY D IA FY ++ G N+ E T + G + Sbjct: 251 YLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIGASNPNFFCTGAPSEINTGAPAGKGM 310 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK----DEAPQAPWEGTTI---- 350 G + N D + P + I+E SWY+ +A AP++G T Sbjct: 311 IKPGVLLNGDYRNVLP-------FDQDKIREFVTSSWYRYTEGRDAGLAPYDGETNADYN 363 Query: 351 ---PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQK 407 P Y SD +Y+WVK+P + G + VGP A M++ A G + +++ Sbjct: 364 GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVDAACDKL-- 421 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA-- 465 G + A ++STLGR+ GR + D++ +Q + I G+ +TF Sbjct: 422 --GLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKWEPET 479 Query: 466 -TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 KGVG++EAPRG LSHW+ I++G NYQAVVPSTWNS R+ +GPYE SL Sbjct: 480 WPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEYSLAH 539 Query: 525 T---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVK 565 T P+ DP++P+E +RTIHS+DPC +CAVH+ D +G +++ + Sbjct: 540 TGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILTRQ 583 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 238/575 (41%), Positives = 341/575 (59%), Gaps = 31/575 (5%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I IDPVTRIEGHLR++ E++ V++AWASG ++RG+E I+K RDPRD +I QRIC Sbjct: 8 QKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTGLIAQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT +H +S+ A E+A +I P NA+ +RN++ A DH+VH+Y L +LD+VD+TS Sbjct: 68 GVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLDYVDVTS 127 Query: 122 ALQADPTKASEMLKGVSTWHLN-SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 AL+AD KASE+ N S + VQ K+ + V +G+LG+FANGYWGH KL Sbjct: 128 ALEADCHKASEIAHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGHAQYKLS 187 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NLI + HYL+AL QR+ ++ +A+ GGKTPH QNL VGGV + +++ LN +RL Sbjct: 188 PEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDM-----LNPQRL 242 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLT--RGKGAVNYLSVPEFPTDSKNGSFL 298 I +F+++ Y D ++ A Y + + G+G N++ + + L Sbjct: 243 NDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEGRGHGNFMCSGGYQL--SDDEPL 300 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS- 357 F G I D S D + I E A SWY DEAP P++ TT P Y + Sbjct: 301 FASGIIWGHDFSKI-------DAFDDTQITEEASRSWYADEAPTRPYDETTEPDYTDMNA 353 Query: 358 -----DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 +GKYSW+K+P + G+ +EVGP A M++ ++ + + + Sbjct: 354 DGTLKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYVKKAKTVRPYMQHFMD------DTG 407 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKG 471 LE+ S +GR R V + D++ S LI NI D TT+ K + A E KG Sbjct: 408 LELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDETTWTKYDFEALPLETKG 467 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 LE PRGMLSH++ I++ + NYQAVVP+TWN+ P++ GPYE+++VG +ADP Sbjct: 468 RAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPYEEAIVGLKLADPQ 527 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +PLEV+R +HSFDPC+ACAVHV+DA G + +V Sbjct: 528 QPLEVLRAVHSFDPCLACAVHVIDAQGQTLSEHRV 562 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 227/587 (38%), Positives = 327/587 (55%), Gaps = 42/587 (7%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++R+ +DP+TRIEGHLRI+ E ++ +SKAWA T +RG+E +VK DPRD W V RIC Sbjct: 3 TERVVVDPITRIEGHLRIELEADDKKISKAWAETTQFRGIETVVKGHDPRDVWAFVGRIC 62 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVCT TH+++SV A E A +I +P A+ IR +IL + HDH+VHFY L ALD+V++ S Sbjct: 63 GVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVNVVS 122 Query: 122 ALQADPTKASEMLKGV-STWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A QADP KA + + STW N+ + F +V+ ++ ++ SGQL +F GYW HP +LP Sbjct: 123 AAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDYRLP 182 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE NL+AV+HYL AL+ QR R+ + GGK PH N VGG+A I+ D +N L Sbjct: 183 PEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHP-NFLVGGMACSIDPDKSETVNQVSL 241 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP----EFPTDSKNGS 296 IK + ++ DFV Y D I + Y ++ G+ + N+L+V + D Sbjct: 242 DQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQSSPNFLAVGMAGATYSGDPAESR 301 Query: 297 -----FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEG 347 G + DL + P + I E +WY DEA P G Sbjct: 302 IPTIHPEIKPGVFLDGDLHTVHP-------FEPWKITEGISSAWYTYADGDEAQLTPDVG 354 Query: 348 TTIPAYD-------GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNE 400 T P Y +DD KY+W K+P + G+ +++GP+A +L+ G +T +++ Sbjct: 355 ETTPQYTGPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGESTTVKLVDD 414 Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQN-QYSALITNIGKGDHTTFV 459 + + + QL+ST GR + R V D + + I GD F Sbjct: 415 ALKTL------GITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDVFN 468 Query: 460 KPNIPA---TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVG 516 E KG+ F+E RGMLSH++ +KD + NYQAVVP+TW + PR+ +G Sbjct: 469 GSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPRDKTGQLG 528 Query: 517 PYEQSLVGT---PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 PYE++L G P+ ++PLEV+RTIHSFDPCMACAVH++D +G E Sbjct: 529 PYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 195/567 (34%), Positives = 285/567 (50%), Gaps = 46/567 (8%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 Q+I IDP+TRIEGHL+I+ ++ G V A GT++RG E +K+RDPRDA I QRICG Sbjct: 2 QKIVIDPITRIEGHLKIEATVDGGEVKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRICG 61 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 VC T+H ++ ++A + +P N + +RN+I A+ HIVHFY L+ALD+VD+T Sbjct: 62 VCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDVT 121 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP-AMKL 179 D + E KV++ I +A+G + + A Y + +L Sbjct: 122 EVADYD----------------GTDPELLKVKDFIARALAAGDMSMLAPFYPRYEGDYRL 165 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P +V AVAHY++AL +R A+ + A+ G+ PH + GGV + ++D Sbjct: 166 PKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAGGVTSHPSIDS-------- 217 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + S ++ L F++ VY D +A YP++ G G N LS F ++ + Sbjct: 218 ISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDYFGIGVGCGNLLSYGVFDLEANGTNLAT 277 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 + + I E K+ W+K E + P T P + Sbjct: 278 RQRLFTQG---TVSASDLTLHTFDPNKITEDIKYGWFKGETNEYPLNEVTEPDHT---KA 331 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YSW+K+P + EVGPLA M+V AG Q +N+ +A + A L Sbjct: 332 EGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQKMVNDTLAHFGAGP------AALF 385 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 STLGR R + C + D + L K IP + +G+G EAPR Sbjct: 386 STLGRHAARALECKIVADEMVKWVMEL-----KIGEPVCADYEIPES--AEGMGLWEAPR 438 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ I++ ISNYQ VVPSTWN P++ GP EQ+L+GT V D + P E+VR Sbjct: 439 GALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPVEQALIGTKVRDNDNPFELVRI 498 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKV 566 + SFDPC+ACAVH+V GNE+ +V Sbjct: 499 VRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 239/629 (37%), Positives = 327/629 (51%), Gaps = 65/629 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS R+ IDPV+RIEGHLR++ E++ V+ A ++GTMWRG+E IVKNRDPR+ W Q Sbjct: 1 MSSRVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVCTT HAL+SVR E AL+I++P NA YIRNI+L HDH+VHFY L ALDWV Sbjct: 61 RICGVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVS 120 Query: 119 ITSALQADPTKASEMLKGV---------------------STWHLNSPEEFTKVQNKIKD 157 A++ADP + + + + +P F Q+KIK+ Sbjct: 121 PLEAVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKN 180 Query: 158 LVASGQLGIFANGYWGHPAMKL-PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 LV SGQLGIFA +W HP K+ PPEV+LIAV+HYL L+ QR+ + GGK PH Sbjct: 181 LVQSGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPH 240 Query: 217 NLAVGGVANPINLDGL-GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE-WLT 274 + VGG+ I++D + +N+ERL ++ + ++ Y +D I Y + T Sbjct: 241 YI-VGGMNCSISMDDMNAPINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGWT 299 Query: 275 RGKGA--VNYLSVPEFPTDSK---------NGSFLFPGGYIEN----ADLSSYRPITSHS 319 G G L ++P + G +EN D + Y P+T + Sbjct: 300 YGGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLT-NK 358 Query: 320 DEYLIKGIQESAKHSWYK---DEAPQAPWEGTTIPAYDG-----------WSDDGKYSWV 365 D IQE HSWY+ + PW G T P Y G ++GKYSW+ Sbjct: 359 DLTNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYTGPKEGTKTHWKYLDENGKYSWI 418 Query: 366 KSPTFYGKTVEVGPLANMLVKLAAGRESTQN--KLNEIVAIYQKLTGNTLEVAQL---HS 420 K P + EVGPLA ++ A ++ ++E+V L L + + Sbjct: 419 KEPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPT 478 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA---TGEFKGVGFLEA 477 T+GR R + C + L NI GD + + KGVG EA Sbjct: 479 TVGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEA 538 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW +IKDG I NYQAVVP+TWN PR+ G +E+S+ T V +PLE++ Sbjct: 539 PRGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEIL 598 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVKV 566 R+IHSFDPC+AC+ HV + EVVS K+ Sbjct: 599 RSIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 189/567 (33%), Positives = 279/567 (49%), Gaps = 56/567 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++ IDPVTRIEGHL+++ E+ NGVV+ A + GTM+RG E +++ RDPRDA + +R CGV Sbjct: 3 KVVIDPVTRIEGHLKVEVEVTNGVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCGV 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H +S A + A VP + IRN+++ A HDH +HFY LSALD++DIT+ Sbjct: 63 CAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAVA 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + +V++KI L+A+G Y PE+ Sbjct: 123 KYQGQDPGLL----------------RVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPEL 166 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 +AV+HYL AL Q A ++ AL GK PH ++ GGV N++ + Sbjct: 167 VTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAGGVTMLPNIE--------VVEQF 218 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWL---TRGKGAVNYLSVPEFPTDSKNGSFLFP 300 +S + + D++E +Y D L G G N+L+ F D + FLF Sbjct: 219 RSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGLDDEGKDFLFK 278 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIPAYDGWSDD 359 G + + +LS+ P+ I E H+WYKD P++ T+P + Sbjct: 279 QGIVLDGNLSNVMPV-------DQSKITEGVTHAWYKDNPNGDHPYDSDTVPD---LAKK 328 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS+VK+P + GK +EVGPLA MLV G K Sbjct: 329 DAYSFVKAPRYDGKPIEVGPLARMLVMQPQGLMDIIAKY-----------------NIKP 371 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 + R R L + N + L +GKG + P +G+G E PR Sbjct: 372 GAVARHAARAFETVILAKEMINWVNQLEAEMGKGLRIHDTEHWNPP-ATGQGIGLTEVPR 430 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ IKD + NYQ VVP+TWN P++ + GP E++L+G P+ D N P+ +VR Sbjct: 431 GALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVPIPDENNPINIVRV 490 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKV 566 I S+DPC+ACA+H++D NE+ KV Sbjct: 491 IRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 477 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 204/574 (35%), Positives = 303/574 (52%), Gaps = 38/574 (6%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ + IDP+TRIEGHLR++ E+ NG VS AW SG +RGME +V+NR P DA IVQRI Sbjct: 1 MTRSV-IDPITRIEGHLRVEMEVTNGKVSDAWVSGGCFRGMEMVVENRTPEDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA SS AAE A I + NA+ IRN++ A H HI+ FY L+ALD+V+ Sbjct: 60 CGVCPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH---PAM 177 +AL+ADP A ++ + + +F ++ ++ + +GQL IF+ ++ A Sbjct: 120 NALKADPADAYDLAQA---AGTSMNSDFVALKERLANFADNGQLSIFSGNWFDAEDGTAY 176 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +LPPE++LI AHYL+AL Q A+++ A++GGK PH+ L GG A Sbjct: 177 QLPPELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPT--------D 228 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 ++L +K+ D++ D+VE DT IA +Y + L GKG Y++ F S+ Sbjct: 229 QKLDELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGRYVAWGVFEGPGDYASY 288 Query: 298 -------LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 P G I++ + + I E SWYK +A T Sbjct: 289 TEQMANRYLPMGVIDDK---------LNLSDVQENLITEYMGRSWYKGDATYTSPYFVTE 339 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P Y ++ + +Y+WVK P + GK E G L+ +L +++ ++ Sbjct: 340 PEYTEYNVEDRYTWVKCPAYDGKPYEAGGLSRVLAAYKRNVPFVVEQVDGLLEALGAPGQ 399 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + STLGR R + + ++++ + LI + GD F +P+ T Sbjct: 400 IGV----AQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGDSEYFREPS---TITGA 452 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G GF EAPRG L H IKDG I YQ ++P+TWN P N + + GP EQ+L+G PV D Sbjct: 453 GTGFWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQALIGNPVGDI 512 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 KP+ +RT+HSFDPC ACAVH+ + + Sbjct: 513 EKPINALRTVHSFDPCTACAVHITEPATGKSFET 546 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 473 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 188/553 (33%), Positives = 276/553 (49%), Gaps = 55/553 (9%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS + +DP TRIEGHL + ++N V A +G M RG E+I++ R P DA IVQRI Sbjct: 1 MSSIVKLDPFTRIEGHLAVSLNVQNNRVKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +H ++SV A E A I +P NA+ RNI+LA++ HI HFY LSALD++DIT Sbjct: 61 CGVCPVSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDIT 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP-AMKL 179 + L A + +QN +K +AS L A + Sbjct: 121 AILDYKGGDAFLL----------------AMQNWVKAELASKNLFPAAPFLPRYQGRYLK 164 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 + N+ A+ +Y ALE + A++++A+ GK PH+ ++ GG+ + ++ Sbjct: 165 DVDFNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPGGITEKVT--------TKK 216 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 ++ KS + +L F+ Y+ D I A +P +L+ GK N+LS F + S L Sbjct: 217 IIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGNFLSFGAFGDANLEKSPLL 276 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 P G + L I+ I+E S Y ++ T+P Sbjct: 277 PAGALLQGKLEEVDDIS----------IKEDVSFSKYSSDSG----REKTVPEP---HKS 319 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G YSW+K+P + G+ +EVGPLA ++V A G + Q N + L + L Sbjct: 320 GAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAFLQKTD------LSLTDLD 373 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S LGR I R + + + + L + D T V NIP + +G G +EAPR Sbjct: 374 SCLGRHIARFIELEVIIEKCEEWMEQL-----RPDQPTAVDFNIPQ--QAEGRGMMEAPR 426 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ I+ I Y+ +VP+TWN P++ GP EQSL+GT VAD PLE R Sbjct: 427 GALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGTIVADKTNPLEAARI 486 Query: 540 IHSFDPCMACAVH 552 + S+DPC+ACAVH Sbjct: 487 VRSYDPCLACAVH 499 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 465 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 204/573 (35%), Positives = 304/573 (53%), Gaps = 33/573 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ TIDP+TRIEGHLR++ E+ +G+V+ AW SG +RGME +V++R P+DA IVQRI Sbjct: 1 MART-TIDPITRIEGHLRVEMEVNDGIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA ++ AAE A I +P +A+ IRN++ A H HI+ Y L+ALD+V+ Sbjct: 60 CGVCPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP----- 175 +AL AD A ++ + + +F +Q+++ +GQL IF+ ++ Sbjct: 120 NALNADTGLAYDVAEEYGLKNA----DFVSLQDRLARFADNGQLSIFSGNWFPTAEQYAD 175 Query: 176 ---AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 L PE +LI AHYL+ALE Q A+ + A+LGGK PH+ L GG Sbjct: 176 GTNEYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGTMFVPT---- 231 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS 292 ++L +K ID+L ++V V D+ + FYPE G G Y + F +S Sbjct: 232 ----DQKLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGCRRYGAWGVFERES 287 Query: 293 -KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 K P G IE +Y+ E I E HSWY P+E P Sbjct: 288 FKMADRYMPSGVIELGPDGNYQ-----LSEVEESKITEYVGHSWYSGSEDLPPFEQGVNP 342 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 Y ++ D +Y+W K + GK +E+G + +LV G + + ++ A+ L G Sbjct: 343 EYTEYNTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIKEHVD---ALLVALGGT 399 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 +++ ST+GR R V + +++ + L+ I GD T F K + E +G Sbjct: 400 PGDLSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYFTKSDA---VEGEG 456 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 GF EAPRG L H +K+G I +YQ ++P+TWN P + + GP EQ+L+G PV D Sbjct: 457 TGFWEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVHGPMEQALIGVPVTDME 516 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 KP+ +RT+HSFDPC ACAVHVV+ + Sbjct: 517 KPIHALRTVHSFDPCTACAVHVVEPKTGKKFET 549 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 230/627 (36%), Positives = 330/627 (52%), Gaps = 67/627 (10%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +R+ +DP++RIEGHLR++ +++ G V A +SGT WRG+E + K+RDPRD W VQRI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVCTTTHAL+++RA E A+ I +P NA YIRNI+ ++ HDHIVHFY L ALDWV Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 121 SALQADPTKASEMLKGV----------------------STWHLNSPEEFTKVQNKIKDL 158 +AL ADP K +++ V + + FT VQ K+K + Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 159 VASGQLGIFANGYWGHPAM-KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQN 217 V SGQLGIF+ +W HP LPPEV+L+AV+HYL L+ QRD + GGK PH Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 218 LAVGGVANPINLDGL-GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR- 275 + VGG+ I+++ + +N +RL ++ I D V+ Y D I Y E Sbjct: 242 I-VGGMPCSISMNDMNAPINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMID 300 Query: 276 --GKGAVNYLSVPEFPTDSKNG---------SFLFPGGYIEN----ADLSSYRPITSHSD 320 G +S ++P D+ G + G +EN D +++ P+ D Sbjct: 301 GGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEG-KD 359 Query: 321 EYLIKGIQESAKHSWY---KDEAPQAPWEGTTIPAYDG-----------WSDDGKYSWVK 366 + + E HSW+ P EG T P + G +D KYSW+K Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFTGPKSGTKEKWEFLDEDKKYSWIK 419 Query: 367 SPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN-----TLEVAQLHST 421 SPTF GKT EVGPLA +V ++ ++ + + +T Sbjct: 420 SPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMTT 479 Query: 422 L-GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA---TGEFKGVGFLEA 477 + GR R + +I Q ++ L++NI GD T + KGVG ++A Sbjct: 480 MVGRTACRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNTWDKDAKGVGLVDA 539 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW+ IKDG +NYQ +VPSTWN+ P+ ++ G YE S++ T V +KPLE++ Sbjct: 540 PRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLEIL 599 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSV 564 + IHSFDPC+ACA H+ + G ++VSV Sbjct: 600 KVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 178/565 (31%), Positives = 264/565 (46%), Gaps = 67/565 (11%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I+IDP+TR+EGHL+I+ E+++G V A SG M+RG E+I++ RDPRD+ IVQRICGV Sbjct: 14 KISIDPLTRVEGHLKIEVEVKDGKVVDAKCSGGMFRGFEQILRGRDPRDSSQIVQRICGV 73 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +SV A + A + V N + RN+I A+ HI+HFY L+ALD+V Sbjct: 74 CPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVS 133 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P A+ L + ++IKD + Sbjct: 134 PFVPRYANADL----------------LTDRIKDGAKA-------------------DAT 158 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N + YL+ALE +R + +VA+ GG+ PH+Q + VGG D ++ Sbjct: 159 NTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTAD--------KVAEY 210 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + ++ FV + Y + + Y + G G N ++ FP D +FL G Sbjct: 211 AARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAFGVFPEDDDYKTFLLKPGV 270 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA--PQAPWEGTTIPAYDGWSDDGK 361 + +E+ K ++E HS++ A G T P D G Sbjct: 271 YIDG----------KDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPD---KPGA 317 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YS+VK+P + K EVGPLA M V+ Q L E+ I K + + A S Sbjct: 318 YSFVKAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKA--FSI 375 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 +GR + ++ + + T+VK IP +G GF EAPRG Sbjct: 376 MGRHVLVAEETWLTAVAVEKWLKQV-----QPGAETYVKSEIP--DAAEGTGFTEAPRGA 428 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H++ IKD I NYQ V + WN+ PR+ GP E++L+G PV D P+ V R + Sbjct: 429 LLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVR 488 Query: 542 SFDPCMACAVHVVDADGNEVVSVKV 566 S+DP + CAVHV+ A+ E V + Sbjct: 489 SYDPULGCAVHVLHAETGEEHVVNI 513 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 184/570 (32%), Positives = 264/570 (46%), Gaps = 97/570 (17%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++I +DPVTRIEGHL+I+ E++ V AW++G ++RG+E I+K RDPRDA I QRICG Sbjct: 5 RKIVVDPVTRIEGHLKIEVELDGNRVHDAWSTGLLFRGLEIILKGRDPRDAQHITQRICG 64 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 V +H +SSV + A I P N + +RN+I A+ HI+HFY L+ALD+V Sbjct: 65 VUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGPET 124 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 P + +LPP+ Sbjct: 125 APFVPRYEGD--------------------------------------------YRLPPD 140 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 V + V HY+QAL +R A+ + A+ G K PH GGV + + + + Sbjct: 141 VTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTSTVTAEQ--------VEA 192 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT----DSKNGSFL 298 + +L F++ VY D +A Y +W + G G N LS +P D + Sbjct: 193 YAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKDPNGKNLF 252 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ-APWEGTTIPAYDGWS 357 F G I+E HSWY+ +A P+EG T+PA D Sbjct: 253 FTRGVYAGGSFM----------PMSADHIREHVTHSWYESKAGGKHPFEGETVPAVD--- 299 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 G YSW+K+P + + EVG LA V + + Sbjct: 300 KRGGYSWIKAPRYESYSCEVGALARQWV--------------------GRDPQVIGLGDK 339 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S +GR R + ++ + L + F ++P KG G EA Sbjct: 340 AFSVMGRHFARAIETTKVAHAMLGWLEEL-----EPGQPAFRPHDVPEK--AKGFGLTEA 392 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG L HW+ I++ +I NYQAVVPSTWN GPR+ GP E++LVGT VADP+ P+E+V Sbjct: 393 PRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALVGTEVADPDNPIELV 452 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 R + +FDPC+ACAVHV++ G VS V+ Sbjct: 453 RIVRAFDPCIACAVHVMEVRGGSGVSRFVV 482 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 183/543 (33%), Positives = 248/543 (45%), Gaps = 73/543 (13%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I IDPVTRIEGHL+ + +ENG V A SG M+RG E I++ RDPRDA IVQRICGV Sbjct: 18 TIAIDPVTRIEGHLKAEVVVENGKVVDARLSGGMYRGFETILRGRDPRDASQIVQRICGV 77 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H+ +SV A + A VP N + RN+I A+ HI+HFY LSA D+V Sbjct: 78 CPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTA 137 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P + ++L E+ Sbjct: 138 PFVP-------------------------------------------RFPKSDLRLSKEL 154 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N V Y++ALE +R + +VAL GG+ PH+Q VGG E+L+ Sbjct: 155 NKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATEIPT--------KEKLVEY 206 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + K+ DFVEQ Y I + Y + G+G L V FP D+ LF G Sbjct: 207 AARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAALCVGAFPLDNSGKKHLFMPGV 266 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIPAYDGWSDDGKY 362 + I+E K+SW+ +E EG TIPA D G Y Sbjct: 267 YAKGKDM----------PFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPD---KAGAY 313 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 S+VK+P + G ++EVGPLA M V + L ++ I K + E A S + Sbjct: 314 SFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAF-SLM 372 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 GR + R + ++ + K T V P +PA+ +G GF EAPRG L Sbjct: 373 GRHVARAEETYYMLGAIEGWLKEI-----KAGEDTVVMPAVPAS--AEGTGFTEAPRGSL 425 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H++ +KD I NYQ V S WN PR+ G E++L+G PV D P+ V R I + Sbjct: 426 LHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVNVARLIRA 485 Query: 543 FDP 545 FDP Sbjct: 486 FDP 488 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 428 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 170/552 (30%), Positives = 266/552 (48%), Gaps = 52/552 (9%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I I PVTRIEGHL + +ENGVV A G M+RG E +++ RDP D+ I QRICGV Sbjct: 2 KIDIGPVTRIEGHLNVQTTVENGVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICGV 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA++S A E A + VP N + + N+I A+ +DH++HFYQL ALD+VDIT+ L Sbjct: 62 CPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAVL 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP-AMKLPPE 182 + + E +KV++ +K V SG+ A + Sbjct: 122 E----------------YTGRDPELSKVRDWVKAEVDSGKRYPAAPFLPRLDGKYLDNRD 165 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 NL A+ +YL A+ ++ AN+ A+ GG+ PH ++ GG ++D ++ Sbjct: 166 ANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPGGCTQNASID--------LILA 217 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPT-DSKNGSFLFPG 301 +S I ++ DF+ Y D +A +PE+ G+ +LS P ++N L Sbjct: 218 YQSLIREVRDFIHLKYIPDVLAVAGAFPEYWEIGQSKGGFLSYGHMPLGPARNSERLLAP 277 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + LS+ + I++ H+ Y + + +P D + Sbjct: 278 GVLLGDQLSAV----------ELGKIRQDVNHALYSSASNLTVRDAAIVPQPDKGGE--A 325 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGR-ESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 YSW+ +P + G+ VEVGP A ++V A G + + + QL+S Sbjct: 326 YSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFAGHAN------ISANQLNS 379 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 LGR + R + + D + + L D + +G G EA RG Sbjct: 380 VLGRHLSRAILAAVIADFVLAESERL-------DPAAPTMAELDPPASGEGFGITEASRG 432 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H++ I++ I+ Y+ VVP+TWN+ PR+ G E +L+GT V +P + +E R + Sbjct: 433 ALLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGTRVQNPEEQIESKRIV 492 Query: 541 HSFDPCMACAVH 552 SFDPC+ACAVH Sbjct: 493 RSFDPCLACAVH 504 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 252/568 (44%), Gaps = 99/568 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + ITIDP+TRI G L I ++E+ ++ SG ++RG E++++ R P D+ +RI Sbjct: 1 MGKIITIDPITRISGFLEIKVKVEDNIIVDGETSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T HA +S A E+ALNI +N YIR+++ +H+ FY + +V++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + P + S+ +LP Sbjct: 121 NIRPIYPQEYSD--------------------------------------------FRLP 136 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N +HY + ++ R A+ +A+LGGK PH + VGGV I+ +L Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDS--------YKL 188 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 I+S + + FV D +IA +YPE+ G N++S F Sbjct: 189 TKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVK 248 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY-KDEAPQAPWEGTTIPAYDGWSDD 359 G I N L + + I E+ +++WY D + P + Sbjct: 249 PGVIINNKLEN----------FDRDKITENIRYAWYVSDTIIENPIMNNEYTV--DLKKE 296 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G YS+VK+P + +EVGPLA + + E + Sbjct: 297 GAYSFVKAPRYADLPMEVGPLARLKIAG--------------------------EYTGGN 330 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S++ R I R + ++ +IL N + + + + + P G G ++ R Sbjct: 331 SSMDRNIARVLETKKIINILYNISEKI--QLLSNNQSAYNIPE-----GAFGEGLIDTTR 383 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G LSH++ I++ I Y + P+ WN P++ G E+SL+G+ + + KP+E+ R Sbjct: 384 GALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGSKIDNIEKPVEIGRI 443 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKVL 567 I SFDPC++CA H+V ++ NE V V+VL Sbjct: 444 IRSFDPCISCATHLV-SNNNEPVKVEVL 470 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 155/568 (27%), Positives = 254/568 (44%), Gaps = 96/568 (16%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+++I I+P+TRI G + ID IEN V A G ++RG E+++ R P DA QRI Sbjct: 1 MNKKIVINPLTRISGFMEIDVYIENNRVVDAKTKGHLFRGFEQMLVGRSPFDAVYFTQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H+++S A E ALNI +Y+R+II +H+ HFYQ + D+V + Sbjct: 61 CGICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLE 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S + H +LP Sbjct: 121 SNSLFNT---------------------------------------------DHHDFRLP 135 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N HY ++LE R A++++A+LGGK PH + +GG+ + + Sbjct: 136 KQINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIGGITTQATAEN--------V 187 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 + + + K+S F+ D IAA+Y ++ G G N L+ F G+ Sbjct: 188 VKLDDSLQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGNLLTYGAFNNYKDLGTLYV- 246 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPAYDGWSDD 359 + +S + + + K I+E +SWYK A P P D ++ Sbjct: 247 -----DPLISKMNANNNLVEPFQEKNIKEKIDYSWYKASNAAYRPDSEMAEP--DMEMNE 299 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YSWVK+P + G EVGPLA +++ E Sbjct: 300 KAYSWVKAPRYEGLPFEVGPLARLILSG--------------------------EYQNGI 333 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S + R + R + ++ +I++ ++I N+ ++ + G G ++ R Sbjct: 334 SAMDRTLARALEAKKICEIMKELLHSVIPNVD-------LQKAYEIPEQASGRGLVDTIR 386 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ +++ IS YQ + PSTW+ ++ G E++L+GTP+ DPN P EV R Sbjct: 387 GALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGTPINDPNNPAEVGRI 446 Query: 540 IHSFDPCMACAVHVVDADGNEVVSVKVL 567 + SFDPCM+CA HV + G ++ ++KV Sbjct: 447 LRSFDPCMSCATHVY-SPGKQMKTIKVF 473 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 145/564 (25%), Positives = 236/564 (41%), Gaps = 101/564 (17%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++ I P TRI + ++ +ENGV+ A+ S T++RG E+I++ R D QRICG Sbjct: 16 EKKVIFPFTRIHNPMLVEAYLENGVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRICG 75 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C++ HA+++ A E AL + VP N RN+I+ + +HI HFY +S D+ Sbjct: 76 ICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDI 135 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 P ++ + E Sbjct: 136 PPFTPHLEGDI--------------------------------------------RFNTE 151 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 N HY +A+E RDA+ + GGK PH + GG ++ D ++ Sbjct: 152 ENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPGGCTMHVDAD--------KINR 203 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 + ++ ++ +F+ D + YPE++ GKG N+LSV F +G LFP G Sbjct: 204 FRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKGNGNFLSVGGFTQP--DGGTLFPHG 261 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 + + + + I E +WYK P PW+GTT P + Y Sbjct: 262 VV----------LEDKHQPFDDRLILEEVTTAWYKPTPPAHPWQGTTEPD---KNQPQGY 308 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 +WVK+P + G +EVGPLA ++ + TL Sbjct: 309 TWVKAPRYQGHALEVGPLARAVIAKEKI--------------------------IGYGTL 342 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 GR R + ++ + L+ + + G+G++EA RG L Sbjct: 343 GRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQE-------SGMGIGYVEAMRGTL 395 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 HW+ I+ G + +YQ + PSTWN R+ + E S+ G + P E R I S Sbjct: 396 GHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTIKHPE-LKEAGRVIRS 454 Query: 543 FDPCMACAVHVVDADGNEVVSVKV 566 FDPC +C+VH++D + + ++V Sbjct: 455 FDPCFSCSVHLIDGEQLRTLDIRV 478 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 157/566 (27%), Positives = 243/566 (42%), Gaps = 98/566 (17%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Q+I I+P TR G +++ +E G V A T++RG E I+++RDPRDA I QRIC Sbjct: 8 GQKIVINPTTRTLGASQVEVRVEAGRVIHARCGATVFRGFELILRDRDPRDAAYITQRIC 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T HA+++ A E + P N +RN+I A +HI HFY + D+V Sbjct: 68 GICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYVRGPE 127 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 P +LP Sbjct: 128 CRPLVP--------------------------------------------PPTTDYRLPR 143 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 N V Y QA++ R A + ALLGGK PH + GG + P+ ++ Sbjct: 144 AKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPGGSSVPVTA--------ITVL 195 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + S + + FVE+ D +A YP++ G ++L+ FP D + FPG Sbjct: 196 NLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFLNFGLFPLDPEASGHHFPG 255 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + + + + I E +++ ++ E P G T P D G Sbjct: 256 AAVIDGRMEAV----------DSGEISEHLRYTHFEGEQLAHPARGETRPNPD---KPGG 302 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW K+P + G+ +E GPLA + V+ + + S Sbjct: 303 YSWCKAPRYRGRALEGGPLAQLWVRG--------------------------DYRRGVSV 336 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R+I R + E+ +++ +AL + F + +P + GVG A RG Sbjct: 337 MDRLIARALISREVAGLMRKWLTAL-----RPGQPVFNRYQVPES--GTGVGLTGAMRGG 389 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L HW+ ++ G I +YQ V P+ WN P + GP E++L+GTPVAD +P+E+ R +H Sbjct: 390 LGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEALIGTPVADAKEPVEIGRVLH 449 Query: 542 SFDPCMACAVHVVDADGNEVVSVKVL 567 SFDPCM+C HV+ D + V Sbjct: 450 SFDPCMSCVAHVIVLDEPVPDRILVF 475 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 378 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 218/566 (38%), Gaps = 69/566 (12%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+RI + + R+EG L I+ EI+NG+V+ A GTM+RG E+I+ R P DA I RI Sbjct: 1 MSRRIKLQ-LNRVEGDLEIELEIKNGIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+T H +SV A ES NI P NA +RNI L + + + D Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICLLSEEIQSDCRQTFLMFTPDLCH-- 117 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + ++ ++ + I ++VA G W H + +P Sbjct: 118 -SSYSTLNDYQSIVAKFQDMQGELYQDAIRFSRDIIEIVA------IFGGQWPHSSYMVP 170 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V + + + R K + D + +L L Sbjct: 171 GGVTSLP--DRRKVINSLAQLQRYTQWFEHK-----------ILGTSLADWSRITSLAEL 217 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 D + + + G G+ +S + Sbjct: 218 NNFTQSSDSAIAILHRF---------CRDMGLDSVGSGSEKMISYGSLIDPENPQERIRS 268 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA--PQAPWEGTTIPAYDGWSD 358 G +Y I E SWY DE+ + P +G T P YD D Sbjct: 269 DG--------TYNYKLKKHAPLDESKITEDITSSWYHDESQTARHPMQGLTQPKYDP--D 318 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 KYSW K+P + ++ GPLA + V Sbjct: 319 SEKYSWAKAPRYDKDVIQTGPLAQLAVAKDPLILDM-------------------LAQNG 359 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 ST R R IL++Q S+L+ + + +GVG +EA Sbjct: 360 SSTWTRQFARIHRQASSLIILKDQLSSLLECLDAPTMIHC------PLEDGEGVGMIEAA 413 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L HW+ I+DG I N+Q + P+ WN+ PR+ N G EQSL+G P+ D ++P+E+ Sbjct: 414 RGSLGHWLKIEDGKIKNFQVITPTAWNASPRDINQQPGHIEQSLIGLPMPDLDEPIEIGH 473 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSV 564 + S DPC+ C VH++ + V Sbjct: 474 VVRSHDPCLVCTVHLLGSGKKHRFGV 499 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 161/558 (28%), Positives = 247/558 (44%), Gaps = 100/558 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+ + T+ PVTRI +R++ +++ G V AW ++RG+E ++ RD RDA + VQRI Sbjct: 1 MTVK-TLFPVTRIHEPIRVEVDVQGGRVVDAWIGACLFRGVELMLTGRDVRDAPLFVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C++ HA+++ +A SA + QY+ N+++AA +H+ HFY L D+V Sbjct: 60 CGICSSAHAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGP 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + P + +LP Sbjct: 120 DSAPFFPRTKGD--------------------------------------------FRLP 135 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N H AL+ A+ ++AL G K PH Q + GV N + RL Sbjct: 136 KKLNDELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMPTGVTERANAE--------RL 187 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 M + + ++ ++VE+VY D IA +Y ++ T G+G ++LS FP + G FP Sbjct: 188 MAYGAILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGHFLSYGGFP-EPGTGQPAFP 246 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-APQAPWEGTTIPAYDGWSDD 359 G +EN L + I E H WY+D+ + P EG T A D Sbjct: 247 VGLVENGGLPQ---------PLDLTRITEHIHHGWYQDDQESRHPIEGRTAAAPD---KS 294 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YSW K+P + E GPLA + E + Sbjct: 295 AAYSWCKAPRYGRLPAETGPLARAWISG--------------------------EYRRGI 328 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S + R+I R ++ + Q + + T +P +GVG LEA R Sbjct: 329 SVMDRLIARAREALKICRLAQEWLARIA-----PGAPTLAPYTLPPR--GEGVGLLEAMR 381 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G L HW+ ++G IS+YQ V P+ WN PR+ GP E++L+GTP+A P +EV R Sbjct: 382 GALGHWLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPIAAPESLIEVGRV 441 Query: 540 IHSFDPCMACAVHVVDAD 557 I SFDPC CA H++ A Sbjct: 442 IRSFDPCFTCAAHLISAP 459 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 139/550 (25%), Positives = 237/550 (43%), Gaps = 94/550 (17%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I IDPVTRI G L+I+ ++EN + A ++G+ +RG E++ + R P D + RICG+ Sbjct: 3 KIVIDPVTRISGLLKIEVDVENNKIVDAKSTGSQFRGFEKMFQGRPPLDIIRLAPRICGI 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+T+HA+++ A E+ALNI N + IR+I +H+ Y + D+V IT++ Sbjct: 63 CSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASN 122 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + L +LP ++ Sbjct: 123 PLYKDGTDKEL-----------------------------------------DYRLPEDI 141 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 YL+A++ R+ +R +A+L GK PH + VGG++ I++ + Sbjct: 142 TKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEK--------ESV 193 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 K I + +F+E D +IA +Y ++ GKG N + + + P Y Sbjct: 194 KYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLY------SDYKAPIKY 247 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 E + + I + + I E+ K+S+ ++ P + + D YS Sbjct: 248 TEASAM-----INGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDA-YS 301 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 WV + + ++E GPLA ++ S + Sbjct: 302 WVDAARYKNYSMEGGPLARQILNGY--------------------------YENKISAMD 335 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 RI+ R + ++ + + + K + IP+ G+G + APRG L Sbjct: 336 RILARVLESVKICESIIGLIDLM-----KLGQAVQEEWQIPSKVN--GIGLIGAPRGALG 388 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 HW+ I++ +SNY + PS WN P + N+ GP E +L+GT + D P+E+ R + SF Sbjct: 389 HWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTEINDMKNPVEIGRIVRSF 448 Query: 544 DPCMACAVHV 553 DPC CA HV Sbjct: 449 DPCSNCAAHV 458 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 160/553 (28%), Positives = 269/553 (48%), Gaps = 49/553 (8%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 ++TIDPVTRIEGHL+++ IE+ V+ +A S M+RG+E+ ++ D A I QR CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIEDSVIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCGC 61 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C HA ++ A E+AL I++ N + +RN+++ A+ D+++HFY LSALD+++I+ L Sbjct: 62 CPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDIL 121 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + + +K++ + A ++ Sbjct: 122 NYNGNDFDMLELK---------------KYVLKEISSKKVFPNPLFSQKYKNAYIKNKDL 166 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N+ + HYL++ E + + +V + G K+ H+ + GGV + RL+ Sbjct: 167 NITLINHYLKSFEAMKKMSEMVKIFGSKSTHMVTIEAGGVTTRPTAE--------RLVKY 218 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 S + F+E Y D +A + E+ GKG N+L+ +GS+LF GG+ Sbjct: 219 ISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDNFLTFDTLLNL--DGSYLFTGGF 276 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS---DDG 360 ++ + + I E +++YK+ P E T + + Sbjct: 277 SKD---------FEYEEGIEPYNIIEYNNYAYYKENGGYKPLELTELTPLTFDEFKQNHT 327 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 KYSW K+P + G VEVGP A ++ G+ KL +V + + G +++ +S Sbjct: 328 KYSWSKAPRYKGHVVEVGPAAIVINNYLRGK---DEKLISLVDKFNRELG--IDIKDYNS 382 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 +GR + R + + D + +L+ GK KP KG+G EA RG Sbjct: 383 VMGRHLSRAIISKLIIDKIIE--DSLMVEEGKLGFIQLKKP----PSNVKGIGLTEATRG 436 Query: 481 MLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 L+H++ I ++G I NY+ +VP+TWN P++ + G E L+GT + D N P+E+ R Sbjct: 437 ALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESMLIGTEIRDINNPVEIARI 496 Query: 540 IHSFDPCMACAVH 552 I S DPC+ACAVH Sbjct: 497 IRSTDPCLACAVH 509 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 163/563 (28%), Positives = 265/563 (47%), Gaps = 59/563 (10%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 S+RITIDP++R+EGHL+I+ +E+GV+++A A+G ++RG+E+ + D R A + QR+C Sbjct: 7 SKRITIDPLSRVEGHLKIETRVEDGVITQARAAGLLFRGLEKALIGYDARVAQQVTQRVC 66 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC HA ++ A E A+ I N Q +RN+I A+ HD ++HFYQLSALD++DI + Sbjct: 67 GVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSALDFIDIEA 126 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG--YWGHPAMKL 179 L + V+ +++ V S ++ A + H Sbjct: 127 VL----------------AYKGGDPVLAAVRQWVEEEVRSSRIFPGAPFLPRYRHDDQLP 170 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 +L+ V +Y D ++VA+ GGK PH + GGV L Sbjct: 171 GDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHPVAIEAGGVTTRPT--------LGM 222 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 L ++ + + FV Y+ D + +P + G+G N+LS P F ++ + LF Sbjct: 223 LAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGNFLSFP-FLPEADGDNHLF 281 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP--QAPWEGTTIPAYDG-- 355 GG + N + + I E +++Y+ ++ P + + D Sbjct: 282 AGGALLNGE----------HQPLELDAINEDHTYAFYRQQSGTALPPLATSRLTPLDWQE 331 Query: 356 -----WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 GKYSW ++P + G+ +EVG A ++ G +L + Sbjct: 332 FQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQGGNQALKELVD-----HTNRE 386 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + VA +S +GR + R + + L+ Q + + + + Sbjct: 387 LGITVADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGVLGFEER-------EVPRNAR 439 Query: 471 GVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 GVG EA RG L HW+ DG+I NY+ VVPSTWN GP++ G E+ L+GT +++ Sbjct: 440 GVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPGAVEKMLLGTRISN 499 Query: 530 PNKPLEVVRTIHSFDPCMACAVH 552 P +PLE R S DPC+AC+VH Sbjct: 500 PEQPLEAARIARSADPCIACSVH 522 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 160/564 (28%), Positives = 271/564 (48%), Gaps = 61/564 (10%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M+ RI IDP++R+EGHL+I+ I++GV+++A A+G ++RG+E+ + D R A + QR+ Sbjct: 1 MTTRIVIDPLSRVEGHLKIETTIKDGVITEARAAGLLFRGLEKALIGYDARVAQQVTQRV 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA ++ A E+A+ I P N Q +RN+I A+ HD ++HFY LSALD++DI Sbjct: 61 CGVCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIK 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH--PAMK 178 L+ + S +V++ ++ + S ++ A + Sbjct: 121 KVLR----------------YRGSDPVLNRVRDWVQAELRSERIFPGAPFLPRYRDDDQS 164 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 +L+ V +Y + D +++VA+ GGK PH + GGV L Sbjct: 165 WDQSDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHPVAIEAGGVTTRPT--------LG 216 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 L + ++ ++++ FV Y+ D + +P + G+G N LS P F ++ + L Sbjct: 217 MLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLLSFP-FLPEADGENHL 275 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK--DEAPQAPWEGTTIPAYDGW 356 F GG + + I E S+Y+ + +P AP + + Sbjct: 276 FAGGARLAGEYRQL----------ELDAISEDHTFSFYRQPEPSPLAPLATHLLTPLNRQ 325 Query: 357 SDD-------GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLT 409 GKYSW+++P ++G+ +EVG +A ++ R + +++ Sbjct: 326 EFQAENERLDGKYSWIRAPRYHGEVMEVGAVARVINSYHHNRA-VKEEVDRT------NR 378 Query: 410 GNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF 469 L +A +S +GR +GR + + + L+ Q + + + Sbjct: 379 ELGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGVLGF-------SELEVPRNA 431 Query: 470 KGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 GVG EA RG L HW+ +G+I NY+ V+PSTWN PR+ G E+ L GT + Sbjct: 432 VGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQGTRIK 491 Query: 529 DPNKPLEVVRTIHSFDPCMACAVH 552 +P +PLE R S DPC+AC+VH Sbjct: 492 NPEQPLEAARIARSADPCIACSVH 515 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 236/576 (40%), Gaps = 58/576 (10%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + I P+ R+EG L + I +GVV+ AW +M+RG E I+K +DP+ ++ RIC Sbjct: 13 GRDLRISPLGRVEGDLDLRVTIRDGVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPRIC 72 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C +H +V A ++A ++P NA IRNI A T FY L A+D T+ Sbjct: 73 GICGGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDL---TN 129 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A + E ++ + + S E + NK ++ A G W H + +P Sbjct: 130 KKYAHLPEYDEAVRRFAPFVGTSYEHGVTLSNKPVEIYA------IFGGQWPHSSFMIPG 183 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 V D R +A+L + +++R + Sbjct: 184 GV---------MCAPTLADVTRAIAILE------------YWKDEWLEKKWLGCSVDRWL 222 Query: 242 YIKSFIDKLSDFVEQ--VYKVDTAVIAAF--YPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 KS+ D + E Y D F G G NYL+ + Sbjct: 223 QNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYGAGWNNYLATGTYFHPELYARP 282 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP-AYDGW 356 G S + ++ ++E HS+Y+ P+EG T P + Sbjct: 283 TIEGRNAALIARSGVY-VNGQFYDFDQAQVREDVSHSFYEGNHVLHPFEGRTEPIDPEVG 341 Query: 357 SDDGKYSWVKSPTF-----YGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 GKY+W K+P + +E GPLA ++ G Q+ + Sbjct: 342 RRQGKYTWAKAPRYLIPGVGSHPLEAGPLARQVIAGRPGAADWQDYDPLFLDA------- 394 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 S L R++ R + +++ + + ++KP E +G Sbjct: 395 --VTTVGPSVLVRVMARMHEAPKYYKLVRKWLDQINLH-----EKFYIKPKELP--EGRG 445 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 G EA RG LS W+V+KDG I NYQ + P+ WN GPR+ + GP EQ+ +G P+ADPN Sbjct: 446 FGSTEAARGSLSDWIVLKDGKIENYQVITPTAWNIGPRDSREVNGPMEQAFLGAPIADPN 505 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDAD-GNEVVSVKV 566 P+E+ S+D C+ C VH D G E+ ++ Sbjct: 506 DPVELGHVARSYDSCLVCTVHAYDEKTGKELARFRI 541 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 154/554 (27%), Positives = 251/554 (45%), Gaps = 77/554 (13%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ +T+DP+TRIEGH+ ++ +E+G VS+ +G M+RG E ++ R P D+ I QRI Sbjct: 1 MSKLLTVDPLTRIEGHMSVETAVESGKVSEVRIAGNMYRGFERMLLGRHPVDSARIAQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC H +SSV A E I P N +R++IL H DHI+HFY L D+V+++ Sbjct: 61 CGVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLS 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SA A L+ +S W +S F +QN+ + Sbjct: 121 SA--AGYNGKDRDLRNISDWLSSSGTAF--MQNRTEG------------------NYIKD 158 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 + +Y +A++ + A +A+LG K P I L GG+ I D L Sbjct: 159 KDSARRFALNYFEAIKIRSQAAGGLAILGAKVPFIHALMPGGITTEITTDA--------L 210 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 M +D ++FV + D IA +PE+ G+ + + F + + LF Sbjct: 211 MKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGEAYNTFYAHQSFNSAKGD---LFT 267 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G I + + ++ ++E S+YK + + +G Sbjct: 268 QGVIADGEKV----------DFDYNKVKELIGSSYYKADGS------------PDENAEG 305 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 YSW+K+P + G +E GP+A V E ++ ++L +++ S Sbjct: 306 AYSWIKAPRYDGIPLETGPIARAAVGND----------EEFKSLLRRLGQKSIK----SS 351 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 +GR++ R L + L + + ++ A +G+GF A RG Sbjct: 352 VMGRLLARAHESVMLCNYLYGRTEEYVI-----GKPAIRAVDLQAPVSGEGIGFSVAARG 406 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK--PLEVVR 538 L H + G +++Y+ +VPSTWN GP + +G E++++GTPV +EV R Sbjct: 407 ALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGTPVNYGGVSGSIEVGR 465 Query: 539 TIHSFDPCMACAVH 552 I SFDPC AC++H Sbjct: 466 VIRSFDPCTACSIH 479 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 132/567 (23%), Positives = 234/567 (41%), Gaps = 100/567 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M ++IT PVTR+ G L ++ ++ G + A GTM+RG E I++ R DA + QRI Sbjct: 1 MVKKITFSPVTRLSGLLSVEIVVDRGKIVNARTRGTMFRGYEWIMRGRKVTDAVYMTQRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H + + NAQY+RNI+ AA +HI HFY D+V + Sbjct: 61 CGICSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKMP 120 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 +++ +L Sbjct: 121 EKPPFLGQDLNDL--------------------------------------------RLN 136 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 E N V +Y +A++ +++++++AL GGK P+ + GGV D ++ Sbjct: 137 REDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHGGVTVAPTAD--------KI 188 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 K+ I+ + FV+ DT +I+ Y ++ G + +S FP +N +L+P Sbjct: 189 NQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGVTPLRLISFGLFPFGPQNDDYLWP 248 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK-DEAPQAPWEGTTIPAYDGWSDD 359 G I N + + ++ I+E +S+Y+ ++ + + PA Sbjct: 249 PGVIINNEFELPQ----------VEFIEEQVPYSYYEANDEGENVFNQYPEPAP---FKP 295 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 YS++K+ + G+ E GP A +++ + Sbjct: 296 EAYSYIKTVLYKGQHFETGPYARGVIRG--------------------------DYRGRA 329 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 ST+ RI+ R++ +L ++ + L + + + V A R Sbjct: 330 STMDRIVARSLEALKLAGFIREWLTRLEPGPPPLNQNEEPVKD-------RAVATTGAMR 382 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV-VR 538 G L H +I+ + +Y + P+TWN PR+ N + GP E++L+GT + + R Sbjct: 383 GALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALIGTEIPGGAMLETIVGR 442 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVK 565 I SFDPC++C HV DG ++ Sbjct: 443 IIRSFDPCISCGTHVYSIDGKLQKKIE 469 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 157/617 (25%), Positives = 235/617 (38%), Gaps = 113/617 (18%) Query: 1 MSQRITIDPVTRIEGHLRIDC--------EIENGVVSKAWASGTMWRGMEEIVKNRDPRD 52 MS RI IDPVTRIEGHLR++ E VV +A+ SGT++RG E I++ RDPRD Sbjct: 4 MS-RIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRD 62 Query: 53 AWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 AW+I QRICGVC HA +S++A E+A N+ A IRN++ A+ +DHI+H Y L Sbjct: 63 AWIITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILL 122 Query: 113 ALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW 172 + + P + +S ++Q K ++VA G + Sbjct: 123 GPELGVVCKYPPMVPPALGK-EGVSKLGIGSSYVGALEIQRKANEIVA------IWGGKF 175 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 H + P + + R+ + + Sbjct: 176 PHHQSEYPGGMAVRPTED-----RIASSLARMFEIW---------------------RWV 209 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS 292 ++ + +K+ + V + + + G N+LS FP Sbjct: 210 AETMVKDFYNLLEANEKVGEAVSSLLDI-------NFRGLQDVGASTGNFLSYGLFPDHE 262 Query: 293 KNGSFL--FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 +L ++ L S I I E ++SWY +E+ P + Sbjct: 263 NYDDWLSVLDSPSKRSSALIHAGAWDGSSKPLDISKIAEYVRYSWYDNESGLNPKD-EDA 321 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P D + YSW+K+P + GK EVGPLA ML + + V Sbjct: 322 PKPDK-NKSEAYSWLKAPRYDGKVYEVGPLARMLNTYGT---RWKIPIRNPVTGEDHGYF 377 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + S + R+ R + L + + P E + Sbjct: 378 EYEVLNPKGSVIDRLAARVALTILTSQKVFEWLLELKSYTNQKVTNYRNVPK-----EGE 432 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G G +APRG L H++ +KD I+NYQ VVPSTWN PR+ GP E +L GT + + Sbjct: 433 GFGLWDAPRGGLLHYIKVKDHKIANYQCVVPSTWNLSPRDDFGQPGPVETALEGTWLPNL 492 Query: 531 NKP---------------------------------------LEVVR------------- 538 + P L + R Sbjct: 493 SVPEICNAIYPEKDVDLSALGLGAMSWGDALAAALTPLGLAELNIERLNGQIYNTSLTLM 552 Query: 539 TIHSFDPCMACAVHVVD 555 + SFDPC+ACAVHVV Sbjct: 553 VVRSFDPCIACAVHVVR 569 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 358 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 168/573 (29%), Positives = 244/573 (42%), Gaps = 67/573 (11%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + IDPVTRIEGH + ++E+GVV A + TM+RG E IV RDP+DA +++QRICGVC Sbjct: 3 VVIDPVTRIEGHHGVRLKVEDGVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGVC 62 Query: 65 TTTHALSSVRAAESALNID------VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 H L+S+ A E+A + +P A +RN I A DH V Y L+ D+ D Sbjct: 63 HNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYCD 122 Query: 119 ------ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYW 172 + E + H KV + + + L I AN Sbjct: 123 AIHKTGLVRFDPIVGRGVKEAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIIS 182 Query: 173 GHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 ++ L + + V ALE RD G + GV P N + Sbjct: 183 KLISIVLDVKKWALGVGLGKTALEHARDVA------GYVIDDVSKKLEKGVVEPPNDPEV 236 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDS 292 G + +Y + + ++ G+ L+ F D Sbjct: 237 G---------------------KGLYDLVSLILVMANLGLKDMGERTPTMLAYG-FLADP 274 Query: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA-PQAPWEGTTIP 351 NG FP G+ +L +++ + I E K+S+Y DEA E T Sbjct: 275 -NGELFFPSGFFNGKEL----------EKFDYRNIGEDVKYSYYDDEAGGSYVGEEDTRK 323 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 + G Y+W K+P + G EVGPLA M+ K + L+ L N Sbjct: 324 LIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKGYRDGWEVGDPLD--------LRKN 375 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 + L R I R L D L+N L +VK I + G Sbjct: 376 LAGGRTASNALARNIARIQEELVLIDYLENLLLELKDY---AGKKAYVKYEI---NDGDG 429 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 VG EAPRG L HW+ I+ G I NYQ + P+TWN PR+ D +GP E++L+GTP+++ + Sbjct: 430 VGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRDSKDQMGPLEEALIGTPISESD 489 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 + V+R IHSFD C+AC VHV + + + Sbjct: 490 Q-WNVIRVIHSFDLCLACTVHVYSEKSSWTIKI 521 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 150/607 (24%), Positives = 237/607 (39%), Gaps = 69/607 (11%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T+DP+TRIEGH RI+ E+ E GV++ A ++G RG E +++++DPRDA ++ QRICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 63 VCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 VC +H +++ A + + +VP++ +RN+ A + H H Y L D + Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDLANPA 122 Query: 121 SA----------LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG 170 + S + I + + Sbjct: 123 YRDILAKYGDVGNAVWKELQGRFAPLIYQLDGTSYPAGSSYLGSIVEFRRLHEAISLIAS 182 Query: 171 YWGHPAMKLPPE-VNLIAVAHYLQAL-ECQRDANRVVALLGGKTPHIQNLAVGGVANPIN 228 HP ++ V VA Q L + V A G +P I ++P Sbjct: 183 KMPHPVLQHVGGVVYSPTVADIGQILSYITKTMEFVEAFTLGVSPDIWIENTYRASSPQK 242 Query: 229 LDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG------------ 276 + +L+ L+ DF D + AAF E + Sbjct: 243 AANFVLNHLQELLNKSLDNK---DFSHSAGWGDVPLFAAFGSELIGEKLLGLPISMKMDL 299 Query: 277 ------KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQES 330 G + +LS F + S Y +++ K I ES Sbjct: 300 AGTYKDPGKIGFLSYGVFFKPENGNGYDPTSPADSRVISSGYMNGYFKLEKFDYKKISES 359 Query: 331 AKHSWYKDEAP-QAPWEGTTIPAYDGWS------DDGKYSWVKSPTFYGKTVEVGPLANM 383 HS+Y D+ + PW G T+P + + +YSW K+P + G EVGPLA M Sbjct: 360 INHSFYIDDVKDRPPWNGVTVPEGNPENIDYTKGSKSRYSWTKAPHYDGIPCEVGPLARM 419 Query: 384 LVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQY 443 ++ + + R+I R + L Sbjct: 420 IIMGEPLVTGLVKTFQDNGYYPV-------------NNYTRMIARMQEILVVVPELTKWL 466 Query: 444 SALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPS 502 + + V ++ G+G EAPRG L HW+ D +++ YQAVVPS Sbjct: 467 TQ----DIQAGGKVAVHTDLSMAKSSTGMGLWEAPRGALGHWVATGPDSMVTLYQAVVPS 522 Query: 503 TWNSGPRNFNDDVGPYEQSLVGTPVA--------DPNKPLEVVRTIHSFDPCMACAVHVV 554 TWN PRN + P EQ+L+GT ++ D + PL ++ T S+DPC+ACAVH + Sbjct: 523 TWNLAPRNSQEIPSPVEQALIGTKISAAENALGVDYSNPLGILHTARSYDPCLACAVHTI 582 Query: 555 DADGNEV 561 D G Sbjct: 583 DKTGKHP 589 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 149/602 (24%), Positives = 243/602 (40%), Gaps = 74/602 (12%) Query: 3 QRITIDPVTRIEGHLRI--DCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 + I DPVTR+ G L ++E V + T++RG E I+K RDPRDA I R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTNSMATLFRGYEVILKGRDPRDAAYISSRA 110 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC HA ++ A E AL I P +RNI+LA +DH +H + L+ D+ Sbjct: 111 CGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDYS--- 167 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 E+++ + I + +GY + + Sbjct: 168 ----------EELVRETNP-------------ELIDKAATTKAKNKDVHGY--DTVLDIM 202 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++N + YL+AL R A L+GGK PH Q++ GG++ +N L Sbjct: 203 KDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNA--------SML 254 Query: 241 MYIKSFIDKLSDFVEQVYKVD---TAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + S + K D+ ++V + PE+ G + + + Sbjct: 255 NEVYSRLIKFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRPDHYDAK 314 Query: 298 LFPGGYIENADLSSY-----RPITSHSDEYLIKGIQESAKHSWYK--------------D 338 A S+ + + L G++E +HS+Y+ Sbjct: 315 FENCDTWGEARWSTPGVLVDGEVVTTKLTELNAGMEEFVEHSYYEKWDGHRFKEDPNGMP 374 Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 +P PW TIP S +YSW +PT+ +E G M + A + L Sbjct: 375 LSPNHPWNKETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMTAKAQKAPASKFL 434 Query: 399 NEIVAIYQKLTGNTL--------EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI 450 + L ++ + + R R + + + I Sbjct: 435 ENTGTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAMENWMMAMDLI 494 Query: 451 GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRN 510 GD V IP G G G A RG L+H ++I++G+I NYQ + PST N+ PR Sbjct: 495 KNGDTKVSVPYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIENYQIITPSTLNAAPRT 554 Query: 511 FNDDVGPYEQSLVGTPV------ADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSV 564 ++GPYE++++ TP+ + K ++++R I SFDPCM C H++ D + +V+ Sbjct: 555 PWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCTTHIMAKDSDHMVTR 614 Query: 565 KV 566 +V Sbjct: 615 EV 616 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 150/575 (26%), Positives = 236/575 (41%), Gaps = 63/575 (10%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + + P+ R+EG L + +E+GVV++AW M+RG E I+K +DP+ ++ RICG+C Sbjct: 12 LHVSPLGRVEGDLDLRVTVEDGVVTQAWTEAGMFRGFEMILKGKDPQAGLIVTPRICGIC 71 Query: 65 TTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQ 124 +H S A + A ++P NA +RNI A T FY L A+D T+ Sbjct: 72 GGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALFAIDL---TNRRY 128 Query: 125 ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVN 184 A E ++ + S E + K ++ A G W H + +P V Sbjct: 129 AKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYA------IFGGQWPHSSFMIPGGV- 181 Query: 185 LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 D R +A+L + H +++R + IK Sbjct: 182 --------MCGPTLSDVTRSIAILE-EFRHNW-----------LESRFLGCSVDRWLEIK 221 Query: 245 SFIDKLS--DFVEQVYKVDTAVIAAFYPE--WLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 ++ D L+ D E + D F E G G NYL++ + K Sbjct: 222 TWEDVLAWVDENESQHNSDLGFFLRFGLEIGLDRFGAGCGNYLAMGTYLHHEKYNRPTIE 281 Query: 301 GGYIENADLSSYRPIT--SHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP-AYDGWS 357 G NA L I E+ ++E S+Y+ P+EG T P Sbjct: 282 G---RNAALIQRSGIYAGGKHYEFDQARVREDHTFSFYQGSGLLHPFEGRTEPIDPADAK 338 Query: 358 DDGKYSWVKSPTFY-----GKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 GKY+W K+P + +EVGPLA +V G E + Sbjct: 339 RQGKYTWAKAPRYDVDGLGSVPLEVGPLARQVVAGKPGEEWQD----------VDPLFSD 388 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 + + S L R++ R +L ++ L + + +G Sbjct: 389 IIAKKGPSVLVRVLARLHEEAKLYKNVREWLGELDLHDRFYIKPVEHEF-------GRGF 441 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G EA RG L+ W+V+++G I+NYQ V P+ WN GPR+ + GP EQ+ +GT + DP Sbjct: 442 GATEAARGALADWIVLENGKIANYQVVTPTAWNIGPRDSRNVNGPMEQAYLGTTIHDPGD 501 Query: 533 PLEVVRTIHSFDPCMACAVHVVDAD-GNEVVSVKV 566 P+E+ SFD C+ C VH D+ G E+ ++ Sbjct: 502 PVELGHVARSFDSCLVCTVHAYDSKTGKEIGVYRI 536 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 130/562 (23%), Positives = 218/562 (38%), Gaps = 67/562 (11%) Query: 9 PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTH 68 P+ R+EG L I IE+G +++A +SGTM+RG E ++ R D +I RICG+C+ +H Sbjct: 13 PLNRVEGDLEIQAAIEDGCITEARSSGTMYRGFENMMTGRGTLDGLVITPRICGICSLSH 72 Query: 69 ALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPT 128 ++V A E P NA+ +RN+ L I + +D+ + + A Sbjct: 73 LTAAVEALEDISGTTPPDNARRLRNLALMVEMLQSDIRQSILMFMVDFTNEGA--YASHP 130 Query: 129 KASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 +S +++ + S + + ++ ++VA G W H + +P V Sbjct: 131 LSSLLMERYAPLSGTSAIQSIQETRRLLEVVA------IIGGQWPHTSFMVPGGVTSSLG 184 Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 + L C + + ++ R + S Sbjct: 185 TP--ELLRCCMIIENFQSWYE--------------------KNVLGCSISRWHQVDSA-Q 221 Query: 249 KLSDFVEQVYKVDTAVIAAFYP-----EWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + D++E++ + F T G+G +L P G + Sbjct: 222 AMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQGPDGFLCYGGLPLPEHTEVKGQQGQF 281 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-APQAPWEGTTIPAYDGWSDDGKY 362 I + I E Y + PW+ +T P + Y Sbjct: 282 IPAG-----FARHGSIQAFDPANIAEDISQCPYSQKHTSVHPWDSSTNPDP-YAPRENSY 335 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 SW+K+P + G VE GPLA MLV+ + + Q S L Sbjct: 336 SWIKAPRYNGHAVETGPLAEMLVRR---DPLFTDLIQR----------------QGSSVL 376 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R + R L + L +N + + +G G ++A RG L Sbjct: 377 SRQLARLTRPARLIPAMLAWLRELSSNPQ-----GKFYHRVKKIPDGQGAGLIQAVRGGL 431 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 HW+ I D I +YQ + PSTWN PR+ +++ G +E++L GT + +P P+E + S Sbjct: 432 GHWVQIVDQKIEHYQIITPSTWNGSPRDGDNNPGAWEKALEGTFIKNPENPVEAGHVVRS 491 Query: 543 FDPCMACAVHVVDADGNEVVSV 564 FDPC+ CAVH + + V V Sbjct: 492 FDPCLVCAVHSLHRGRKKGVLV 513 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 142/559 (25%), Positives = 227/559 (40%), Gaps = 66/559 (11%) Query: 4 RITIDP-VTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 RI ++ + R+EG L I +E+GVV A +GTM+RG E+I+ R PRDA +I R+CG Sbjct: 3 RIELNVDLNRVEGDLSIQVTLEDGVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C T H + V A E A N VP NA IRN+ L A + + + A D A Sbjct: 63 ICGTAHLYAGVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPDLCHPRYA 122 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 M++ + + E + ++ ++VA G W H + LP Sbjct: 123 GDVLFEP---MMRAFEPFKGDIYRETLAMTRRVLEIVA------HFGGQWPHSSYMLPGG 173 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 V + + C+ +++ + + + + + + + L Sbjct: 174 VVTPP--DTRRLIACRSVIDQLQRWYEQR-----------IIGAGLDEWMALGSADALFE 220 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD----SKNGSFL 298 + G G + +S + + L Sbjct: 221 WLERPGPA------NAALGLITRFLRSQGMHRLGIGTPHMISFGAWCDPQRWGPPYDAHL 274 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD-EAPQAPWEGTTIPAYDGWS 357 PGG+ ++D +P+ + E +HSW+K E + P+EG T+P Y Sbjct: 275 LPGGFY-DSDSGQVQPL-------DPSLVTEHVRHSWFKPYEGGRHPYEGETVPDYQP-- 324 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 D +YSW K+P + G+ V+ GPLA +L+ A L + Sbjct: 325 DSDRYSWAKAPRYGGRVVQTGPLAELLIGGDALV-------------------RDLHATE 365 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 R R + L ++ FV P + +G G + A Sbjct: 366 GAGAWLRQFSRVRRIGFELRQARRMLDELGAHL---GEPHFVPPAPGTEVDGQGCGLVMA 422 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L HW+ I++G+I YQ V P+ WN+ PR+ + G +E SLVG V DP+ P+E+ Sbjct: 423 ARGALGHWVRIENGVIQKYQIVTPTAWNASPRDSDGVPGHWESSLVGLKVQDPDDPIEIG 482 Query: 538 RTIHSFDPCMACAVHVVDA 556 I S DPC+ C VH VD+ Sbjct: 483 HLIRSHDPCLVCTVHFVDS 501 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 146/594 (24%), Positives = 231/594 (38%), Gaps = 65/594 (10%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RITIDPVTR+ LR+ E+ +G ++ A +SG ++RG+E+++ R P DA QRICG+ Sbjct: 2 RITIDPVTRLSSGLRVTAELTDGAITSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICGM 61 Query: 64 CTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 C+ +HA +SV A ESA +P +A +RNI+ +H+ H Y D D Sbjct: 62 CSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPDLADPVY 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + + +L + ++ + G+ G +P Sbjct: 122 GDALNSSSLGNLLWQ-ELKERYAVSGGQAYGEALRCIREIGRAEGVLGGRSPCSPAIVPG 180 Query: 182 EVNLIAVAHYLQALE---------CQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL 232 V + + ALE Q+ + + G + + G + I + Sbjct: 181 GVTVRPARGDIGALETCLENIDGFLQKRLVGAMTI-GEWLANTHDQDAGFGYDYIEHLPM 239 Query: 233 GVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGA-----VNYLSVPE 287 G L+ + + F +++ D + Y G + +LS Sbjct: 240 GDLSASK---GWGDLPLFMMFFSRMFARDVLSLP-AYIGLDDAGGYPLDDQLIGFLSYGS 295 Query: 288 FPTDSK-------------NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS 334 F +G+F P G+ + I +D I E S Sbjct: 296 FYRVRDESGRLKDGYGTVEDGAFEMPAGFTPGG----MQNIYLAADRVDPNLIVEHVAAS 351 Query: 335 WY---KDEAPQAPWEGTTIPAYDGWS---DDGKYSWVKSPTFYGKTVEVGPLANMLVKLA 388 +Y ++ +AP +G T+PA S D +YS++K+P + EVGPLA + Sbjct: 352 FYDYSEERLSEAPLDGETVPAGRASSIELDGARYSFIKAPRYGRVPCEVGPLARQINSRE 411 Query: 389 AGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALIT 448 + +L ++ + S R + R + +L L Sbjct: 412 SLIIDAMRRLYS--------RNMSVTNYPMASVYTRTMARMQETLLISRMLHEWLDDLHV 463 Query: 449 NIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSG 507 D + G G +EAPRG L HW+ I KD ISNYQ V P+TWN+ Sbjct: 464 ----SDERQKYCVPVSVKPNRTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTWNAS 519 Query: 508 PRNFNDDVGPYEQSLVGTPVA-------DPNKPLEVVRTIHSFDPCMACAVHVV 554 PR GP E +L+G + P+ + I SFDPC ACAVH V Sbjct: 520 PRCSEQKSGPMELALLGCSTTPSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 344 bits (882), Expect = 6e-93, Method: Composition-based stats. Identities = 189/493 (38%), Positives = 262/493 (53%), Gaps = 54/493 (10%) Query: 87 NAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKAS-EMLKGVSTWHLNSP 145 NA+YIR++IL+ HDHIVHFY L +DW+D+ SAL ADP KA+ E +K +T Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 146 EEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVV 205 E VQ K++ LV +G LG FAN YWG+P K PE NLI ++HYL+ALE QR A + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 206 ALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI 265 AL GGK PH Q++ VGGV ++ L+ RL K +++FVE+ Y D + Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDM-----LDPARLQEFKQKFQHVAEFVERAYYADLVMA 175 Query: 266 AAFYPEWLTR--GKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYL 323 A Y G +++ + + LF G I N DLS H++ Sbjct: 176 AKAYATSPDVLGGCNVHTFMAAESILLNPDD--HLFTDGVIRNCDLS-------HAENVD 226 Query: 324 IKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW-------------SDDGKYSWVKSPTF 370 I+E H+WY + PQ P++GTTIP + ++ GKYSWVKSP + Sbjct: 227 PSLIEEDVTHAWYDAKQPQHPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWVKSPRY 286 Query: 371 YGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTV 430 G+ VEVGPLA + V A G + + ++E LT L L +TLGR R + Sbjct: 287 NGEPVEVGPLATIAVNYARGNKPVVDVVDEF------LTKTGLPAQALFTTLGRTAARML 340 Query: 431 HCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD 490 H + + +++ N+ D TT++KP I E+KGVG LEAP + Sbjct: 341 HTTVIARHGLETFESMVANL-NSDQTTYIKPTIDPDKEYKGVGILEAP---------LSS 390 Query: 491 GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 G +N + W P + N +GPYE SLVG +A+P KPLE++R IHSFDPCMAC+ Sbjct: 391 GCPNNLE-----RW---PYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCMACS 442 Query: 551 VHVVDADGNEVVS 563 VHV+D G + Sbjct: 443 VHVMDYKGQSLSE 455 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 342 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 149/619 (24%), Positives = 240/619 (38%), Gaps = 114/619 (18%) Query: 4 RITIDPVTRIEGHLRIDCEIEN--------GVVSKAWASGTMWRGMEEIVKNRDPRDAWM 55 R+ +DP+TRIEGHL + E + VV KA++ ++RG E I++ RDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 I QRICGVC H ++++A + A ++ A IRNI+ AA+ +DH++H Y L + Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTYLLVGPE 122 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP 175 + + A +S + +Q K ++VA G + H Sbjct: 123 -IGVVCKYPPMVPPALGKEGIRKLGLGSSYVQCVDIQRKANEIVA------LWGGKFPHH 175 Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 + P V + + + L + + Sbjct: 176 MCEYPGGVTVKPTGD-----RIAQTLAKATELW---------------------EWCAHV 209 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 L+ L+ IK + +S+ + ++ + + + G NYLS FP Sbjct: 210 ALKDLIAIKERNEIVSERLSEL-------LGIEHRAFADIGASWGNYLSYGIFPDPENYD 262 Query: 296 SFLFP----GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE-APQAPWEGTTI 350 ++ + ++A + + + I E K+S YKDE + PW+ Sbjct: 263 DWVKAQDGQPSFRKSAVIYAGSWQNGELKPFERDKIVEYVKYSRYKDEISGMKPWDVEMT 322 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 Y+W+K+P + GK EVGPLA M+V L + +TG Sbjct: 323 NDIVWKDKPNAYAWMKAPRYDGKVHEVGPLARMIVTYG---------LRWKFDVTNPITG 373 Query: 411 NTLEV-----AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIP- 464 T+ V S + R+ R V + L + + P+ Sbjct: 374 ETVSVDWEVMNPKGSVIDRVASRVVQALLFATKIMEWAVQLKDYASEYPIVSKDIPDYKY 433 Query: 465 ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVG 524 E +G G EAPRG L H+ IK+ +I+NY VVPSTWN GPR+ + GP E++L G Sbjct: 434 VPNEGEGWGLWEAPRGALLHYTKIKNKVIANYACVVPSTWNLGPRDDFGNPGPVEKALEG 493 Query: 525 T-----------------------------------PVADPNKPLE-----------VVR 538 P+ LE + Sbjct: 494 CWLPKNLSVPDVCNALWPEEDVLGMKWGDALAKAIAPLGLAELNLEPSNGAKYNTSLALA 553 Query: 539 TIHSFDPCMACAVHVVDAD 557 + SFDPC+AC VH ++ + Sbjct: 554 IVRSFDPCIACGVHTIELN 572 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 339 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 132/563 (23%), Positives = 213/563 (37%), Gaps = 93/563 (16%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++RIT+ P R+EG L + ++++GVV A + ++RG E+I++ R DA +V RI Sbjct: 1 MTRRITVGPFNRVEGDLEVRLDLDDGVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRI 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + ++++V A +A + N N+ AA DH+ HFY D+ Sbjct: 61 CGICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDF---- 116 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + WH F VQ + Sbjct: 117 ----------ARDAYAGRPWHPEIAARFKAVQGSAAQAM--------------------- 145 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 L + +++ LL GK PH GG I+L L L + Sbjct: 146 --------------LPARARLLQIMGLLAGKWPHSLAFQPGGTTCAIDLGERVQL-LSII 190 Query: 241 MYIKSFIDKLS--DFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + F+++ D ++ V +D+ + + RG +L+V + + G Sbjct: 191 GDFRDFLERTMFGDSLDNVLAIDSVAALEAWRDG--RGGDFARFLAVADDLALHRLGRIA 248 Query: 299 FP---GGYIENADLSSY-----RPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTI 350 P G D + P+++ + I E +W +D + +P E T Sbjct: 249 LPLMSFGAYHGEDAPLFAAGVLDPLSAARTSFDPAAITEDVARAWMRDTS-LSPLEADTD 307 Query: 351 PAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 P D YSW K+P G EVG LA + G ++ + + Sbjct: 308 PDAD---KPAGYSWCKAPRLAGGPAEVGALARQAI---DGDPLIRDCVARFGSC------ 355 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 R++ R L + L D + Sbjct: 356 ----------VTTRVVARLRETARLALAMHQWARQL-------DLAEPFLERGERGRDGT 398 Query: 471 GVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 G+G +EA RG L HW+ ++ I YQ + P++WN PR+ GP EQ+LVGTPV D Sbjct: 399 GIGLVEAARGSLGHWIELRGDSIRRYQIIAPTSWNFSPRDRGGVPGPLEQALVGTPVGDA 458 Query: 531 NKPL-EVVRTIHSFDPCMACAVH 552 + + SFDPCM C H Sbjct: 459 GARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 150/578 (25%), Positives = 248/578 (42%), Gaps = 77/578 (13%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++++ I P+ R+EG L + E V KA+ ++RG+E I+K + P D+ +I RI Sbjct: 1 MNEKV-ISPLNRVEGDLDLKVVFEGKKVVKAFPMSRLFRGIEIILKGKFPMDSLVITPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C +H LS+ +A E A VP NA +RN++ A + + H Y + +D V++ Sbjct: 60 CGICGGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNLK 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 +++ + + S ++ + ++ A G W H + +P Sbjct: 120 YEKMGF---YRDIVLRWAPYLGQSYKQAVAWSKRYTEIYA------IFGGQWPHGSAMVP 170 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V +++ ++ + + A K +GG L++ Sbjct: 171 GGVTTDPLSN--DIIKAKSILASITAEFLEKVI------LGG-------------PLDQF 209 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WLTRGKGAVNYLSVPE--FPTDSKNGS 296 + +KS D L + + D + I + E W G G+ +S P S Sbjct: 210 LQVKSKRD-LDQWAKDYPNGDISKIWNYGLEMKWDKIGSGSQYLMSYGHVTLPEHYDPAS 268 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY----KDEAPQAPWEGTTIPA 352 + + E R I +E I E HS+Y D+ P+ G T P Sbjct: 269 HVEKKRFREGLLDLRTREIHQIKEE----NIVEFVSHSFYSYEQGDKVGLHPYNGETTPL 324 Query: 353 YDGWSDDGKYSWVKSPTFY--GKTV--EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 GKY++ K+ + GK V EVG LA M+V AG + + I Sbjct: 325 PP--ESKGKYTFTKAFRYKLGGKYVAPEVGALAMMVV---AGDPLMTDLVYRIGT----- 374 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 S L R I R V + +I++ + + + D T++KP Sbjct: 375 -----------SVLAREIARIVRLARIHEIMREELESY-----EYDEITYIKPE--EKLS 416 Query: 469 FKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVA 528 +G G +EA RG L HW+VI++G I NYQ V P+ N GP + + +L GT V Sbjct: 417 GRGYGLVEASRGSLGHWLVIEEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIALQGTEVE 476 Query: 529 DPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 +PN P+EV + S D CM C VHV+D G E++S+++ Sbjct: 477 NPNNPIEVAHIVRSHDACMVCNVHVLDG-GKEILSMRL 513 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 147/574 (25%), Positives = 229/574 (39%), Gaps = 72/574 (12%) Query: 1 MSQRITID-PVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+ R +D PV R+EG L + EI +G+V AW++GTM+RG E ++ R D ++ R Sbjct: 1 MAVRKILDVPVNRVEGDLELRLEIADGMVVDAWSAGTMFRGFERLLIGRGALDGLVVTPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C+TTH +++ +A ++ VP N +RN+ L A + + +D+ + Sbjct: 61 ICGICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFANP 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 Q E ++ + + E + + +++A G W H + + Sbjct: 121 AYRAQ---PLYDEAVRRYAPLAGEAVAEAVRETKHVVEIIA------IIGGQWPHSSFMV 171 Query: 180 PPEVN-LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 P ++ VA LQ H+ + G I L Sbjct: 172 PGGLSYAPPVAELLQC------------------RHVLDGFRGWYERRILGCSLDRWRAV 213 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN---- 294 + + S G G N+LS ++ Sbjct: 214 DSLEALDLWLEESAAHRDSDVGFLLRFGRTI-GLDRLGGGHGNFLSCGSLDLPAETAARG 272 Query: 295 -GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY-KDEAPQAPWEGTTIPA 352 G L P G+ A + + I E SWY E + P EG T P Sbjct: 273 VGGHLVPSGFARGAVVEG----------FDPAAIAEHVAASWYAAYEGGRHPAEGETEP- 321 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 Y + +YSWVK+ + G E GP A +V AG + L Sbjct: 322 YASGEEGRRYSWVKAARYLGTPAETGPFAERIV---AGDPLFTDLLRR------------ 366 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGV 472 Q + L R + R L + + I G H + P + G+ Sbjct: 367 ----QGPNALARELARLTRPATLLPAMALWLGEV---IASGGHDIYADPG--PIPDGAGI 417 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 G ++A RG L HW+ IKDG I YQ + P+ WN PR+ GP+E++L+GTPVAD + Sbjct: 418 GMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSGGVRGPWEEALIGTPVADADN 477 Query: 533 PLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 P+EV I SFDPC+ C+VH V G + V++ Sbjct: 478 PVEVGHVIRSFDPCLVCSVHTVR-KGRSLGRVRL 510 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 143/552 (25%), Positives = 225/552 (40%), Gaps = 73/552 (13%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++RI P R+EG L I +I V A+ + ++RG E+I++ +DPRDA IV RIC Sbjct: 5 TRRIIAGPFNRVEGDLEIRLDINGSAVRAAYVNSPLFRGFEQILEGKDPRDALTIVPRIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ + ++++ A +A I P N + I II AA DH+ HF+ D+ Sbjct: 65 GICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADFARAIY 124 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A ++ ASE + + + VQ+ + + + G W H P Sbjct: 125 AGESWYGMASEQFRA---------KNGSSVQDAMNARASLLHIMGLLAGKWPHTLSVQPG 175 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 QRD R++A++ ++ + L + +LE L Sbjct: 176 GATKA---------PDQRDRVRLLAII----RQFKDWIEKSIFAAPVERILAIDSLESLR 222 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + + + DT + + G G ++S +P D G L P Sbjct: 223 AYHAEAPQHGSLRLFLTICDTLELGS-------MGLGPKRFMSYGAYPMD---GRHLLPP 272 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G N + I E +W E P+EG T+P + Sbjct: 273 GIWLNGKIM----------PVDTGLIAEDLTSAWMNGETA-HPFEGRTLPDETMANG--- 318 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 YSW K+P G+TVEVG A ML+ Q L + A + Sbjct: 319 YSWCKAPRMAGQTVEVGAFARMLIAD---HPLAQGLLQDGAA----------------NV 359 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 R++GR ++ + ++ V IP + + +G+ EA RG Sbjct: 360 RARVVGRLFEIASTVLAMEQWAADIV-----PGEPAMVHGRIPQSAKVEGL--TEAARGS 412 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD-PNKPLEVVRTI 540 L HW+V++ G I++YQ + P+TWN PR+ GP EQ+L G PV P+ V + Sbjct: 413 LGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGPVEQALRGAPVRHGEETPVSVQHIV 472 Query: 541 HSFDPCMACAVH 552 SFDPCM C VH Sbjct: 473 RSFDPCMVCTVH 484 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 330 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 135/580 (23%), Positives = 220/580 (37%), Gaps = 112/580 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ I + P R+EG L + E+ +G V++A + M+RG E I+ RDP DA I RI Sbjct: 1 MSRLI-LGPFNRVEGDLEVQLEVTDGRVTEARVNAPMFRGFELILNGRDPMDALSIAPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + ++++ +A A + VP N + N++LA DH+ HFY D+ Sbjct: 60 CGICSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAV 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A + W + F + + + + A W Sbjct: 120 YAAR--------------PWFREAERRFAALAGSTSNGGLRSRAALAARARWF------- 158 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 ++ LGGK PH + GG + I L L R+ Sbjct: 159 ----------------------ELIGTLGGKWPHTGAVLPGGTSRAIETTERIRL-LARV 195 Query: 241 MYIKSFIDK--LSDFVEQVYKVDTAVIAAFYP------------------EWLTRGKGAV 280 +++F+++ +E+V +D+ + + G G Sbjct: 196 REMRAFLEQTLFGTALEEVATLDSLAALQRWRARAAGSDMALFLDLAEATQLTNLGPGPG 255 Query: 281 NYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA 340 YLS + G G I E A+H+WY + Sbjct: 256 RYLSYGAYARF--EGGHALARGVW--------DAALQQGLPLDPTQISEDARHAWYAEST 305 Query: 341 ---PQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 P G T P D G YSW K+P + VE G +A LV G+ + Sbjct: 306 SAQALHPMAGLTQPEPD---KPGAYSWNKAPRLGSQVVETGAIARQLV---DGQPLIRAA 359 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 + +A + R++ R + + +++ L H Sbjct: 360 V----------------LAHGGTVYTRVLARLLEMARILPLMEQWL--LALQPHAPFHAV 401 Query: 458 FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 +P + +G+G EA RG L HW+ I++G I++YQ V P++WN PR+ G Sbjct: 402 QAQPE-----QAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAGTPGA 456 Query: 518 YEQSLVGTPVADP-----NKPLEVVRTIHSFDPCMACAVH 552 E +LVG + + + + V + SFDPCM C VH Sbjct: 457 LEAALVGARLDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 231/590 (39%), Gaps = 71/590 (12%) Query: 21 CEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESAL 80 E+++G V A SGT +RG E+++ RDP DA QR+CG+C+T HA ++ A ES Sbjct: 1 MEMKDGSVVDARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESLA 60 Query: 81 NID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALD-----------WVDITSALQADP 127 +P +A +RNI+ H+ + Y D + D+ +AL + Sbjct: 61 GATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPDLADPIYGDLLRYSDVGTALTGEL 120 Query: 128 TKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIA 187 + ST H +T + I+ + +G+ G H + +P V + Sbjct: 121 AGRFNVPGYASTGHTAPGSAYT---DAIRFVKLTGEAEAILGGRSPHSPVIVPGGVTVRP 177 Query: 188 VAHYLQALE---------CQRDANRVVALLG-GKTPHIQNLAVGGVANPINLDGLGVLNL 237 A L L+ +R ++L + H + N I G L++ Sbjct: 178 SASDLMKLKGCYASIVDFLERRLTYPLSLDEWLENTHSTQANPDFILNRIKSLPTGDLSM 237 Query: 238 ER----LMYIKSFIDKLS--DFVEQVYKVDTAVIAAF-----------YPEWLTRGKGAV 280 E+ + F ++ DF+ V+ + + Y + A Sbjct: 238 EKGWNDMQLFSVFCSRMMSYDFLSMPIYVELDTLGGYPLYDQLIGFLNYGGFYRVRDRAG 297 Query: 281 NYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAK---HSWYK 337 N+ P D + G+F P G+ S + + + E S+ Sbjct: 298 NFTD-GYSPVDGEEGTFEIPSGFTPG----SMPNLFDSPGKADPAMVAEQVSGSFFSYSG 352 Query: 338 DEAPQAPWEGTTIPAY---DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGREST 394 E P G T P+ D KYS+VK+P + E GPLA M+ RE Sbjct: 353 GETALKPEAGETSPSPRAADIDYSGHKYSFVKAPRYGNVPCETGPLARMINS----REPY 408 Query: 395 QNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD 454 + +++ + + + S R++ R C +L L + D Sbjct: 409 IMNIMQMMHFSNPVFSSGKSYNR-TSVYTRVLSRMQECLITAQLLGRWIDDLEVH---SD 464 Query: 455 HTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFND 513 + P P GE G +EAPRG L HWM + +DG I+ YQ + P+TWN+ PR+ Sbjct: 465 PRKYCVPVTPGRGEA-GACMIEAPRGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAET 523 Query: 514 DVGPYEQSLVGTPVA-------DPNKPLEVVRTIHSFDPCMACAVHVVDA 556 GP E SL+G P+ + I SFDPC++CAVH + Sbjct: 524 KFGPIELSLIGAKTTPRGNIPGSEVNPISLYHIIRSFDPCVSCAVHTIRT 573 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 200/556 (35%), Gaps = 108/556 (19%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG +++ EN + A+ +RG E I++NR P DA +I RICG+ Sbjct: 3 KIERKVLHRVEGEIQLKLIWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICGI 62 Query: 64 CTTTHALSSVRAAESALN-----IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C +H +++V+A E ID+ A IRN+ +HI FY D++ Sbjct: 63 CGHSHLIATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLK 122 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + K ++L+ + + ++ + N+I +++ +G W H + Sbjct: 123 L--------EKDKDILEDFTPLKGDKWKKALGISNEILKIIS------ILSGQWPHTSYA 168 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 +P V + D +++ + +G D L++E Sbjct: 169 VPGGVMSDPIN---------TDIVEAISITDSVIRFFEEEIIG-------TDINTYLSVE 212 Query: 239 RLMYIKSFIDK--LSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 I+K L F+E +K G+ +++V + G Sbjct: 213 SFDQFMDKINKGDLRRFIELTFKNGME----------KTGRAYDRFITVDAILPCVREGV 262 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 S ++ I+E HS+ + Sbjct: 263 ------------------KKKRSCKFDPSRIKEVDSHSFLTKDGT--------------D 290 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 +YSW K+ + G +E GPLA V + + ++ + Sbjct: 291 FSRKRYSWAKAVRYDGLPMETGPLARKAVSKNSLFQDLISRFGD---------------- 334 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 S L RI R + + + +I + + P E +G G +E Sbjct: 335 ---SYLVRIWARIDE----IGRMALTLKSYLLSINTKEPSYIKPPVKIENLEGEGTGLIE 387 Query: 477 APRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 A RG L H + ++ G I Y + P+TWN GPR P E++++G L+ Sbjct: 388 AARGSLLHRLELEKGKIKKYTIITPTTWNLGPRC-ERYHSPAEKAIIGL-----ESSLKA 441 Query: 537 VRTIHSFDPCMACAVH 552 + SFD C C H Sbjct: 442 EMILRSFDVCSVCTTH 457 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 98/567 (17%), Positives = 180/567 (31%), Gaps = 101/567 (17%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I IDPVTRIEGH +I +++ G V A T +RG E+ R + I RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C +H L+S + + L++ +P A +R ++ H + F+ LSA D + Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMD 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + A + Sbjct: 122 SEPAKRNVFGLIGVDPELARGG-------------------------------------- 143 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + ++ ++ LLGGK H GGV++P+ + Sbjct: 144 -------------IRLRQFGQEIIELLGGKKIHPAWAVPGGVSDPLTTENRS-------- 182 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 +I++ I + V + ++ + E T G ++ + G + Sbjct: 183 HIQNRIPEAKSTVLNAIALFKKLLENYQKEAQTFGNFPSLFMG-----LVTPQGLWETYD 237 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G++ D + + I E+ + Y P + Sbjct: 238 GHLRFVDSGGNIVADKLEADNYHEFIGEAVQEDSYLKSPYYRPLGYPDSKDHC------- 290 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 VGPLA + + G +L E + S+ Sbjct: 291 -------RLDSGMYRVGPLARLNICSQIGTPLADQELREFRTY---------GSGTVKSS 334 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 R + + ++ D + + VG EAPRG Sbjct: 335 FFYHYARLIEILASVEHIEILLDD-------PDILSTRLRAAAGINRLEAVGVSEAPRGT 387 Query: 482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H I ++G+I ++ + N+ N V + + V I Sbjct: 388 LFHHYRIDENGLIQKVNLIIATGQNN--LAMNRTVAQIARHFIQGSQIQEGMLNRVEAGI 445 Query: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 +FDPC++C+ H G + ++++ Sbjct: 446 RAFDPCLSCSTHAF---GKMPLVIELV 469 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 138/600 (23%), Positives = 228/600 (38%), Gaps = 83/600 (13%) Query: 8 DPVTRIEGHLRI--DCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 DP+TRI G L I + EN V++ +++ +++RG +K +DPRD+ I RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 HA SV A A + P A +I N+ AA DH + L +D+ + + Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCEQM-VRET 144 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 +P + + I D++ + +N Sbjct: 145 NPGVWEKAKTAEAPHAAEHGYR------TIADIMTA---------------------LNP 177 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 Y + L R + L+ G+ H L GGV + L + RLM Sbjct: 178 FTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPTIQ-LFTDYITRLMKYVE 236 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD----------SKNG 295 F+ K+ + ++ P + G+ + F +K G Sbjct: 237 FMKKVVPLHDDLF----DFFYEALPGYEEVGRRRILLGCWGSFQDPNVCDYNYRTMTKWG 292 Query: 296 SFLF-PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ------------ 342 +F G + + +L + + + + ++ G S W +E Sbjct: 293 RGMFVTPGVVVDGELLTTDLVDINLNIRILLG--SSFYQDWDHEETSVKNDPLGNAVDRK 350 Query: 343 APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKT--------VEVGPLANMLVKLAAGREST 394 PW TT+P + G Y+WV SP + K GP+A + AG Sbjct: 351 HPWNQTTLPRPQKRNFGGNYTWVMSPRWLDKRTGDHLALDTGGGPIARLWATALAGLVDI 410 Query: 395 QN--------KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSAL 446 K+ + ++ + + R RT Sbjct: 411 GYIKSTGHSVKIYLPRTALKPEAEFEWKIPMWSNAIERDRARTYFQAYSAAAALYFAEQA 470 Query: 447 ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNS 506 + + G TF +P E G GF EA RG+LSH +VI+DG I+NY P+ WN+ Sbjct: 471 LAELHAGRTRTFTDFKVP--DEAIGCGFHEAVRGVLSHHLVIRDGKIANYHPYPPTPWNA 528 Query: 507 GPRNFNDDVGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVHVVDADGNEV 561 PR+ GPYE ++ TP+ + N P ++++R + SFDPC+ C VH+ +G + Sbjct: 529 SPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMRAVRSFDPCLPCGVHMYVGNGKTI 588 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 151/671 (22%), Positives = 246/671 (36%), Gaps = 142/671 (21%) Query: 1 MSQ-----RITIDPVTRIEGHLRIDCEIENGVVS---KAWASGTMWRGMEEIVKNRDPRD 52 M++ RI IDP+TRIEGHL + ++ +AW TM+RG E R P D Sbjct: 1 MTRTSRTIRIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPED 60 Query: 53 AWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAA-HTTHDHIVHFYQL 111 + RICGVC +HA +SV A + A + +RN+ A +DH + L Sbjct: 61 LPHVTSRICGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGML 120 Query: 112 SALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGY 171 D+ VS + + + KV + +D+ + Sbjct: 121 EGPDYS----------------AAIVSKFTPSVYDHAKKVYAEHRDIHGFTTIADIMEA- 163 Query: 172 WGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG 231 +N + + A+ QR A L+ G+ H L GG++ I+ Sbjct: 164 -----------LNPLTGKVWQYAVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDISDAE 212 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGA----VNYLSVPE 287 L+ + + KL+ +V+ Y + +++ F E G + Sbjct: 213 ------NLLLAYTTRLIKLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSYAYTS 266 Query: 288 FPTD-----------SKNGSFLFPGGYIENADLSSYRPITSHSD---------------- 320 P++ + +G F P Y E D+ Y P+ + Sbjct: 267 EPSECPGMKTTVLAVTSSGIFDDPEAYGE--DMPQYDPVEFYKAIDKAAIKRLLKPGIVI 324 Query: 321 ---------EYLIKGIQESAKHSWYKD----------------------EAPQAPWEGTT 349 + + I E + ++Y+D +A PW T Sbjct: 325 RGELVSTSLKEYQRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLHGKYDAKYHPWNKVT 384 Query: 350 IPAYDGW--SDDGKYSWVKSPTFYGK-----TVEVGPLANMLVK-------LAAGRESTQ 395 IP +G + GKY+W K EVGP A +L+ G ++ Sbjct: 385 IPKLEGKAINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWF 444 Query: 396 NK-------------LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQ 442 +E+ + +V + +T+ R+ R + Sbjct: 445 KAGGREITVHLPRACTDELPGSVCEPMEFKWKVPPISTTIYRLWARAFNLLLDVVGAWKG 504 Query: 443 YSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPS 502 S + + K T +P T G GF EAPRG + HW+V ++G + N Q P+ Sbjct: 505 VSQYRSLLDKRYTETSRPWKVPRTIT-FGFGFTEAPRGTVRHWVVQENGKVLNVQIHAPT 563 Query: 503 TWNSGPRNFNDDVGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVH-VVDA 556 T N P + P+EQS + + V + P L+ VR+I SFDPC+ACAVH Sbjct: 564 TGNVSPHDRFGY-SPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACAVHLAFRK 622 Query: 557 DGNEVVSVKVL 567 DG V +V+ + Sbjct: 623 DGKTVKTVEKM 633 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 112/571 (19%), Positives = 198/571 (34%), Gaps = 112/571 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+ +++I+PVTR+EGH ++ ++ G + K RG E+ ++ R DA + R Sbjct: 1 MT-KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L+S +A ++ + +P A +RN+I A H H +HF L++ D Sbjct: 60 ICGICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDL--- 116 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 PT + + + + + Sbjct: 117 -----MFPTTDDALKRNLLGVAGENMDMIK------------------------------ 141 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG---LGVLN 236 ++ ++ +V +GG+ H VGG + P+ + L L+ Sbjct: 142 -------------DSIAMRKVGQTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELLTLS 188 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 + + ++ + VE + + D + Y E G NG+ Sbjct: 189 DNLVETAERTLNVGKEMVENLKEKDLMNLG--YFESYHMG--------------LVNNGA 232 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G I + EY I E + P+ A Sbjct: 233 QDIYEGNIRVVNSEGKIEYEFDPAEYA-NYITEGVR-----------PYSYLKFLALLKR 280 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 +GK V L+ + V Q E V Y K Sbjct: 281 RGEGK-----------GAYRVNTLSRLNVCDKMPTPIAQKYYEEFVKTYGK--------- 320 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 H + R + ++++ I D V P +GVG +E Sbjct: 321 PAHQPMLFHYARLIELLSSSELIRKFLED--DKIVDTDVRAEVDPKNI---TGEGVGCVE 375 Query: 477 APRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 APRG L H D GII++ VV + N+ + E+ + VA P+ Sbjct: 376 APRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDI-GVQKVAEKYIKTPEVAKPHILNH 434 Query: 536 VVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + I ++DPC++CA H + + +++S+ V Sbjct: 435 MEMVIRAYDPCLSCATHTI-GEEPKILSIHV 464 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 110/560 (19%), Positives = 191/560 (34%), Gaps = 115/560 (20%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 ++T++PVTRIEGH +I +++ G V +RG E+ ++ R +A IV RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNID---VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 +C H L++ +A ++ + V A +R I+ H H +HFY L+A D++ Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + V IKD Sbjct: 123 KD------------------------RKTRNVFQIIKDAPDI------------------ 140 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 LQA+E +++A +V GG+ H + GG++ ++ + Sbjct: 141 -----------ALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQ------- 182 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 K + K VE + + E + N + K+G + Sbjct: 183 ----KDLLKKAQRNVELAEAT-LELAVPIFEENIDLVNSLGNIETYHTGLV--KDGVWDV 235 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAK-HSWYKDEAPQAPWEGTTIPAYDGWSD 358 G + D +Y I E K +SW Sbjct: 236 YDGIVRIKDKEGNMFREFKPADYA-DTIAEHVKPYSWL---------------------- 272 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 K+ ++K + V PL+ + V K E +++ G + Sbjct: 273 --KFPYIKDLGYPDGVYRVSPLSRLNVADKM--PDAAPKAQEHFKEFRENFGYAQQ---- 324 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 TL R + + + GD + P+ GVG +EAP Sbjct: 325 --TLLYHWARLIELLACAECAADALE--------GDLSGEKFPDSLERQAGDGVGIVEAP 374 Query: 479 RGMLSHWMV-IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L+H ++G+I+ VV + N+ P + + D + Sbjct: 375 RGTLTHHYTCDENGLITKANIVVATIQNN-PAMEMGIQKVAQDYIKPGVEVDDKIFNLME 433 Query: 538 RTIHSFDPCMACAVHVVDAD 557 I ++DPC++CA H +D+ Sbjct: 434 MVIRAYDPCLSCATHTIDSQ 453 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 186/554 (33%), Gaps = 122/554 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 RI + R+EG +++ ENG + A RG+E +++ R DA +I R+CG+ Sbjct: 2 RIEKRLLARVEGTAQLELVWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCGI 61 Query: 64 CTTTHALSSVRAAESALN-IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 C H ++ V+A E A+ + + A+ +R+I L +HI FY D Sbjct: 62 CGHAHLMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPD------- 114 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 F ++ K+ + F W Sbjct: 115 -------------------------FIRLGEKLDEF------EPFRGKRW---------- 133 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 +A+ +A +V+A+ GG+ PH GG+ + + + L Sbjct: 134 ---------KEAISVASEAIKVIAIFGGQWPHSSYAVPGGITSNFTSTDVS----KALAL 180 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLS----VPEFPTDSKNGSFL 298 + + + + + + W ++ G L Sbjct: 181 VSRVEGFFLESLVGMPVEAFLSL-RKHGSWEGLKGDVKLFIDLCFKYGLERVGMSYGRLL 239 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 GG + + I I+E+ D Sbjct: 240 -TGGEVFPCITPGHFTGEKKLCSLNISKIREA---------------------------D 271 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 YS K + G E GPLA + + + Sbjct: 272 GSPYSGAKRVRYNGMPYETGPLARQFLSGNPFVKRLHKMYGD------------------ 313 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 S + R++ R + EL ++ + ++L + I + + + P +GVG +EA Sbjct: 314 -SYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKEP--SCQIPFQKPERITGEGVGIVEAA 370 Query: 479 RGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 RG L H + I+ G+I+ Y + PS WN GPR +G E++++G P+ Sbjct: 371 RGTLIHRVSIEKGVITRYHIITPSVWNLGPRCEK-YLGVAEKAMIGL-----ENPIHAEM 424 Query: 539 TIHSFDPCMACAVH 552 + SFD C C H Sbjct: 425 VLRSFDVCSVCTTH 438 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 288 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 105/558 (18%), Positives = 175/558 (31%), Gaps = 103/558 (18%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M QRI IDPVTRIEGH +I +++ G V+ A T +RG E+ + R + I R Sbjct: 1 MPQRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L+S +A + L + +P A+ +R ++ H + F+ LS+ D + Sbjct: 61 ICGICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLLLG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + A M S + ++ + G HPA + Sbjct: 121 WESDPAQRNVFGLMAA--EPDLARSGIRLRQFGQEVIQHL---------GGQKIHPAWAV 169 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P V + + R AL Sbjct: 170 PGGVRSALTDQGREQIRAGLLEVRSTAL-------------------------------- 197 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 S + + D +E E G ++ + G + Sbjct: 198 -----STLKRFKDLLEDHAS-----------EARIFGNFPSLFMGLIN-----PKGLWEH 236 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 G + D I E+ + Y P + Sbjct: 237 YQGCLRFVDSVGNIIADHLDPSQFQSFIGEAVQTDSYLKSPYYRPLGYPDQTPGLCRLES 296 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G Y VGPLA + V G +L E + Sbjct: 297 GMY-------------RVGPLARLNVCDRMGTPLADQELQEF---------RQRGNGTVT 334 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF---KGVGFLE 476 S+ R + + ++ Q +P + A + +GVG E Sbjct: 335 SSFYYHYARLIEILACIERIEQQIED----------PGLCQPPLRAQADVNQLEGVGVSE 384 Query: 477 APRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 APRG L H + G++ + ++ + N+ N V + + P + Sbjct: 385 APRGTLFHHYQVDATGLLQSVNLIIATGQNN--LAMNRTVAQIARHYLHGPDIPESMLNR 442 Query: 536 VVRTIHSFDPCMACAVHV 553 V I +FDPC++C+ H Sbjct: 443 VEAGIRAFDPCLSCSTHA 460 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 286 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 98/567 (17%), Positives = 190/567 (33%), Gaps = 113/567 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M ++I + PVTRIEGH +I ++++ + A + RG E+ ++ R +A IV + Sbjct: 1 MVKQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQ 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L++ +A + ++ P A +R ++ H H +HFY L A D+V Sbjct: 61 ICGICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFVFT 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 +PA+ Sbjct: 121 PDGNPTQRN--------------------------------------VFGIVGANPALAT 142 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 +A+ ++ ++V G++ + GG++ + Sbjct: 143 -------------EAVMFRKIGQQIVEATAGRSINPVTYIPGGISKGLT----------- 178 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 ++ +D+L +Q +A P + Y+ + ++++ Sbjct: 179 ----QADVDRLLPMAKQAVTYAQNALALAKPIF-------NQYIDAIKLLGEAES----M 223 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ-APWEGTTIPAYDGWSD 358 G ++N +L Y + + I+E + + + P P Sbjct: 224 HMGLVKNGNLELYDGMLRLQGK-DGSIIKEFKPQDYLQYISEYVYPHSYMKAPY------ 276 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 W K + V PL+ + V +L E + + Sbjct: 277 -----W-KEMGWENGMYRVSPLSRINVCDQIDTPLANAELQEFRKAFGR---------PA 321 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 TL R + + S + GVG +EAP Sbjct: 322 QMTLLYHYARLIELLYASEKAVELLSNKAITGKELRVPV-------KARAATGVGVIEAP 374 Query: 479 RGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + + G+I+ +V + N+ + N + Q ++ +P + + Sbjct: 375 RGTLIHDYDTDEKGMITKANIIVATAHNN--KAINLGLKNTAQKIINSPTPEEGILNRME 432 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSV 564 I ++DPC +CA H V G + V Sbjct: 433 MVIRAYDPCFSCATHSVA--GKMPLEV 457 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 285 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 110/568 (19%), Positives = 185/568 (32%), Gaps = 97/568 (17%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M+++I+IDP+TR+EGH +ID + ++G V ++ RG E+ + R + I + Sbjct: 1 MAKKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPK 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICGVC H ++S +AA++ + P A+ IR + AH H HI+HF+ L+A D++ Sbjct: 61 ICGVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A + + Sbjct: 121 PEAGPGKRNILGLVDE-------------------------------------------- 136 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 + + L+ + A ++ L+ G H GG+A P++ + Sbjct: 137 ------LGKGAVRRVLQNRGYAQKIQGLIAGHPIHPVASLPGGMAGPVSEKTRQEIA-GM 189 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 I+ F F E E T +Y+ G F Sbjct: 190 ASEIREFAQFALWFFENHILAQDRNRELLTGELFTH---RTHYMG-----LVDSQGRVNF 241 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 G L P ++ E PW P Sbjct: 242 YDG-----QLRVVTPEGETMAQFDGSDYLEHLA-------ETVLPWSYMKFPYLRDKGWH 289 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G V LA + V Q + A Y +H Sbjct: 290 GLIDGA-----DSGVYRVNSLARLNVADGMATPLAQEAYETMRAFYG--------GTPIH 336 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 +TL R V + + L+ + T ++P +GVG +EAPR Sbjct: 337 NTLAFHWARLVELMQAAEA-------LVDLSQDPEVTDTNVRSLPEGRPGEGVGVVEAPR 389 Query: 480 GMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H +G++ +V + N+ + V Q L+ D + Sbjct: 390 GSLIHHYTTDANGLVKTVNLIVATVQNNAGMGMS--VKKAAQGLIQDGAPDEAVLDMIEM 447 Query: 539 TIHSFDPCMACAVHVVDADGNEVVSVKV 566 ++DPC+ACA H + G + V++ Sbjct: 448 GYRAYDPCLACATHAL--PGESDLEVRL 473 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 108/555 (19%), Positives = 193/555 (34%), Gaps = 114/555 (20%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG + + ++G V A+ +RG E ++K + DA +IV R+CG+ Sbjct: 2 KIERKVLNRVEGEIELKLLWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCGI 61 Query: 64 CTTTHALSSVRAAESALN-----IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H ++ V+A E A + + + A IR + L +H+ FY D V Sbjct: 62 CGHAHLMACVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVK 121 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + + + E + N ++A G W H + Sbjct: 122 LEPS----------IAELYEPLRGRAWVEALRASNMPIKVIA------LFGGQWPHTSYA 165 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 +P V + L E + + ++ +G L+L+ Sbjct: 166 VPGGVVCDPTGYELSQAELFLERLK---------TFFESWLLGM-------PLEEYLSLK 209 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 Y+K L F E + + G+ +++ E L Sbjct: 210 GRNYLKDIRGDLGRFTEVAIEHNLH----------EEGRSYDRFITGGEL-------KPL 252 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 F G+ + + E+ + ++++ Sbjct: 253 FRSGFFT----------REGVSPFDADKVSENDEFTFFRRNGS----------------- 285 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 Y+W K+ + G E GPLA LV S + Sbjct: 286 --AYTWSKAARYSGLPCETGPLARQLVSGNRVIGSLFRRF-------------------G 324 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFLEA 477 S L R++ R L Q + K D ++ +P++ +GVG +EA Sbjct: 325 SSVLVRVVARMDEAVRLFTEAQRTLHRI-----KLDEPSWNRPSVDEKVFSGRGVGVVEA 379 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + I+ G I +Y + P+ WN GPR+ +G E++L+G + L+ Sbjct: 380 ARGTLIHELEIEGGRIRSYNIITPTVWNLGPRDAEH-LGVAERALLGL-----DSELKAE 433 Query: 538 RTIHSFDPCMACAVH 552 + SFD C C H Sbjct: 434 IVVRSFDVCSVCTTH 448 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 284 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 110/551 (19%), Positives = 191/551 (34%), Gaps = 140/551 (25%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I +TR+EG ++ E GV+ A S RG+E++++ R DA +I RICG+ Sbjct: 2 KIEKLVLTRVEGEASLNLVWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICGI 61 Query: 64 CTTTHALSSVRAAESALNI-DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 C H +++VRA E+A+ I ++P A+ R + +H+ FY Sbjct: 62 CGHAHLIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMP-------- 113 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 +F K + + Q F W Sbjct: 114 ------------------------DFLKFKESLS------QFEPFKGERW---------- 133 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 +A++ +++AL GG+ PH GG+ + + ++ Sbjct: 134 ---------KRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSERE--------VLK 176 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPE--WLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 + + + F E+ D + E L+ GK +LS Sbjct: 177 ALNLVKEGKTFFEKNVSEDLELFLNLCEEFNLLSIGKAYNRFLS---------------- 220 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 GG + SY+ ++ ++ +QE + Sbjct: 221 GGGLAYCFNPSYKKGKGKVCKFNVRYVQEL---------------------------EAA 253 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 YS + G E GPLA L+ + A+ Sbjct: 254 DYSKANPVRYKGLPYETGPLARELISKNPLVLKLYKNYGDSYAV---------------- 297 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 R+ R +L +IL+ L+ ++ + + +G G +EA RG Sbjct: 298 ---RVAARLAEIKDLLEILEKLLKELMNHLEEP----SCLWEDRSDESGEGFGVVEAARG 350 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H +VI+ G I +Y+ + PS WN GPR +G E+++VG + L+ + Sbjct: 351 TLIHRVVIEKGKIKDYKVITPSQWNLGPRCKK-YLGVAEKAIVGL-----DSELKAQMVL 404 Query: 541 HSFDPCMACAV 551 SFD C C Sbjct: 405 RSFDLCSVCTT 415 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 138/650 (21%), Positives = 226/650 (34%), Gaps = 139/650 (21%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE--NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 + I IDP+TRIEGHL + E++ + + W TM+RG E ++ R P DA I R Sbjct: 33 TAEIFIDPITRIEGHLGLKAEVDVTSRKTTNTWVFATMFRGFEVFMRGRPPEDAIAISSR 92 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNI-ILAAHTTHDHIVHFYQLSALDWVD 118 +CGVC +HA ++ A + AL +RN+ + +DH + L D+ + Sbjct: 93 VCGVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSE 152 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + P+ + ++ + + + +KD Sbjct: 153 VAVS-KLTPSCWE--AAKTTPAEYSAVHGYRTIADIMKD--------------------- 188 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPI-NLDGLGVLNL 237 +N I + ++ QR A L+ G+ H L GG++ + L Sbjct: 189 ----MNPITGRIWQLTVKYQRIAREAGVLIYGRHSHPATLIPGGISTDLSTAQYLFEGYA 244 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVN--YLSVPEFPTDSKN- 294 RL + ++ + +D A + G S F Sbjct: 245 FRLTQLTAWTKFVV-----AVWMDLADFYNKNCNYEDEGYTYSKPILYSSGVFDDPEAYS 299 Query: 295 -----------------GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK 337 P G +L + + + + E S+Y+ Sbjct: 300 QLGDDYKTIYEKIDEVAKKRAAPPGLYIGGELVT------ENITEHQRNVVELVDSSFYE 353 Query: 338 DEAP------------------------QAPWEGTTIPAYDGWSDDGKYSWVKSPT--FY 371 + PW TTIP S GKYSW + + Sbjct: 354 EWKDKTTLFTKTDPAGNPLVGGDETLVWYHPWNKTTIPRPTDSSWSGKYSWAATVRLYWK 413 Query: 372 GK--TVEVGPLANMLVKLAAGRESTQNK---------------------LNEIVAIYQKL 408 GK EVGP+A M V + + + + ++ + Sbjct: 414 GKLYPFEVGPIAKMYVMAHSNLKGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEE 473 Query: 409 TGNTLEVAQLHSTLGRIIGRTVH-CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG 467 T +T+ R+ R ++ D L KG PA Sbjct: 474 VTFTYYAPPKSTTIERVRARAFDMAVDVADAWAFVLRGLYYINSKGMTQASRPWKEPAFS 533 Query: 468 EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD------------- 514 G G LE PRG + HW+V+K+G I+NYQ P+T N GPR + Sbjct: 534 --LGFGQLEVPRGNVEHWIVVKNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTK 591 Query: 515 ------VGPYEQSLVGTPVADPNKP-----LEVVRTIHSFDPCMACAVHV 553 + P+E + + T V++ +P L+ VR I SFDPC+ACA H+ Sbjct: 592 SPEGYCLSPFEAAALHTVVSEEVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 98/556 (17%), Positives = 178/556 (32%), Gaps = 112/556 (20%) Query: 8 DPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 +PVTRIEGH +I ++ G V +RG E+ ++ R + IV RICG+C Sbjct: 2 EPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICDV 61 Query: 67 THALSSVRAAESALNI---DVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 H L++ +A + D+ A +R ++ H H +HFY L+A D V Sbjct: 62 QHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV------ 115 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 N + V I+D+ Sbjct: 116 -----------------VPNGTRKTRNVFQIIQDMP------------------------ 134 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 LQA++ +R+ +V+ GG+ H + GG++ ++ + L + + Sbjct: 135 -----EVALQAIKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQADLLAKAKENV 189 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + + + E + K + +K+G + G Sbjct: 190 ELAQATI------------ELAVPILEEKIDLVKTLGYFGDTRHCGIVTKDGDWDVYNGK 237 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAK-HSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 + D + EY + E K +SW K+ Sbjct: 238 VRIKDKDGSIYTEYRNLEY-KDIVAEHVKPYSWL------------------------KF 272 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 ++K + V PL+ + V + ++ G L Sbjct: 273 PYIKELGYPEGIYRVAPLSRINVCDKM--PDAAPLAQGALEDFRDRFGYA------QYPL 324 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R + ++ + D + P+ +G G +EA RG L Sbjct: 325 LFHWARLIELLASAEMAVDALEQ--------DLSGDKFPDALERTAGEGAGIVEAARGTL 376 Query: 483 SHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 H D G+I+ +V + N+ P + + D + I Sbjct: 377 IHHYTTDDEGLITQANIIVATIQNN-PAMEMGIQQVAKDYIKPGVEVDDKIFNLMEMVIR 435 Query: 542 SFDPCMACAVHVVDAD 557 + DPC++CA H +D+ Sbjct: 436 AHDPCLSCATHTMDSQ 451 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 116/545 (21%), Positives = 187/545 (34%), Gaps = 117/545 (21%) Query: 18 RIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 + ++ G V++A + ++RG E I++ R P DA IV RICG+C+ ++++ +A Sbjct: 1 EVTLTLDAAGFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQAL 60 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKG 136 I N + +LA DH+ HF+ D+ Sbjct: 61 ADWARIKPVPNGALVAQTVLAVENLADHLTHFFLFFMPDFTHSAY--------------R 106 Query: 137 VSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALE 196 W + F + S + A W H Sbjct: 107 TMPWFDAAVRRFAPYRG------ESAARWLAARAQWFH---------------------- 138 Query: 197 CQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDK--LSDFV 254 +V LL G+ PH + G I+ L L + ++ ++ + D + Sbjct: 139 -------LVGLLAGRWPHTLAVQPSGTTRTIHAMEQREL-LRMVGQMRRYLTESLFGDTL 190 Query: 255 EQVYKVDTAVIAAFYPEW-----------------LTRGKGAVNYLSVPEFPTDSKNGSF 297 + V +D+A + E T G+ +LS + Sbjct: 191 DAVLALDSADALLAWAEGRESDAAFFIQVAHALELFTVGRAYDRFLSYGAY--------R 242 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 +P G E A +S I E SW A P EG T+P Sbjct: 243 AWPAGVWERATAASV--------PLDEAAIVEEVAASWLGG-AASHPAEGETVP---WLE 290 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 YSW K+P ++G E G LA +V AG ++ + Sbjct: 291 RPDAYSWCKAPRYHGAPAETGALARAVV---AGVPLARDLVQRW---------------- 331 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 S R+I R C + ++ + + D + E +GVG +EA Sbjct: 332 GGSLFSRVIARLWECARIVQWVEAWLTEI-------DVKAPFIEPVVWPNEGRGVGLVEA 384 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L HW+ + +G I YQ + P+TWN PR+ GP E++L G P V Sbjct: 385 ARGALGHWLEVANGRIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEGLTTGAGAMPF-VH 443 Query: 538 RTIHS 542 + S Sbjct: 444 HVVRS 448 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 272 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 102/556 (18%), Positives = 175/556 (31%), Gaps = 103/556 (18%) Query: 5 ITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +TIDP+TR+EGH +ID ++ G V +A+ RG E R D I RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C T H +++ +A + +++ A+ IR ++ A DH +H Y L D+ Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDF------- 139 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + Sbjct: 140 -------------------------------------------IVGPQAPAAERNVIGVI 156 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 N + + + + +R ++A GGK H GGVA + + L Sbjct: 157 NKVGLEVGKRVIATRRRLRELIAYFGGKVIHPVLGLPGGVAKGLKPEDLAT--------F 208 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 ++ DF + T ++ ++ + + Y Sbjct: 209 QALAADTLDFAQ-----------------FTLQVFRDLVIANQDYVKLITSDPYTHRTYY 251 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHS--WYKDEAPQA--PWEGTTIPAYDGWSDD 359 + D ++ + +E AK Y++ + PW Sbjct: 252 MGLVDAANKVAFYDGQIRVVDADGREYAKFPVQRYREFIAEHVEPWSYVKFCYLKPLGWH 311 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 G S + V PLA + V Q +E + L +H Sbjct: 312 GFEEGPASSIYA-----VAPLARLNVADGMATPLAQKAYDEYFSA--------LGGKPVH 358 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 TL R V + + S + + IP G+G +EAPR Sbjct: 359 HTLANHWARVVEILAAAERMVELVSD-------PEILSTDLRTIPTAKPTVGIGVVEAPR 411 Query: 480 GMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H + G+I+ +V + N+ R + + V+D + Sbjct: 412 GTLFHHYETDERGLITLANLIVAT-QNNAARIAMSVDRAAKSLIKQGQVSD-GLMNMIEM 469 Query: 539 TIHSFDPCMACAVHVV 554 ++DPC CA H + Sbjct: 470 AFRAYDPCFGCATHAL 485 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 271 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 189/575 (32%), Gaps = 123/575 (21%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++ITI P+TRIEGH + ++++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T H L++ +A + +P A +R +++A H +H + LS D++ + Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYL-LEG 120 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A A A L + E K+ +I + A G HP +P Sbjct: 121 ATPATRNVAG--LAKANPDLARMAIEARKIGQRITEE---------AGGKPIHPVSAIPG 169 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ LE + +A+ Sbjct: 170 GMSFSLTEQKRAELEAYAKRSLEIAV------------------------------AAWN 199 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + D+ +DFV+ + V T I G + + Sbjct: 200 LVNGEFDRKADFVKTLGVVQTDFIGMTSGGKFETYDGPIRMMD----------------- 242 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 ++ + + I+E A+ P+ Sbjct: 243 --------ANGGSLGEFQAKDYSSHIEEYAE-----------PYSYMKFTKLKS------ 277 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 VGPLA + V + G L E A Y + Sbjct: 278 ---------GSGFYRVGPLARVNVADSMGYPEADKMLAEFRAKYGRAPQQPALYN----- 323 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R + + + V+ + +GVG +EA RG Sbjct: 324 ----LARIIEVAAASERALALLQD------RAITDKNVRNPVAGIKNTRGVGIVEATRGT 373 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + D G I++ +V + N+ + ++ + G AD ++ + Sbjct: 374 LIHDYTVNDKGFITSANLIVATGHNNRAID-RGVFETAKKYIHG--DADEATLNKIEMLV 430 Query: 541 HSFDPCMACAVHVV----------DADGNEVVSVK 565 ++DPC++CA H + D++GN + VK Sbjct: 431 RAYDPCVSCATHAIGRMPIILSLFDSEGNVIREVK 465 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 109/570 (19%), Positives = 187/570 (32%), Gaps = 114/570 (20%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS++ IDPVTR+EGH +I +++ G V A T +RG EE V+ R + I R Sbjct: 1 MSKKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H L++ +AA+ ++ DVP +A +R ++ H + F+ LS+ D V Sbjct: 61 ICGICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A AD + + + + + + ++ HP + Sbjct: 121 YDADPADRNIEGVLAE--NPQLAERGIDLRSFGQNVIAALGEKKV---------HPDFAV 169 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 V+ + + L + Sbjct: 170 AGGVSNTLDRE-------------------------------------DGEDLLEESQPL 192 Query: 240 LMYIKSFIDKLSDFVEQVYK--VDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 Y++ ID L D E++ +D A Y +T G +Y + ++G Sbjct: 193 AGYVRETIDLLKDIFEEMDDDTLDYATYPTGYMGLVTEEGGLEHY--DGDIRLVDESG-- 248 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 + D I E +K Y P Y Sbjct: 249 ---------------DQLEEIDDGAYRDIIAERSKEWSY-----------LKFPYYKDRG 282 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 F VGPLA + + E + + Sbjct: 283 ------------FEDGQYRVGPLARLNAVDDVRTPQAHEEWVEFMDAAEGAVHERSTYY- 329 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 R + + +Q ++ G KP GVG +EA Sbjct: 330 -------HWARLIEMLYCVERIQELLED--DDVYDGITNIPTKPKA-----GTGVGVIEA 375 Query: 478 PRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG L H I D G + N +V +T N+G N ++ + P ++ Sbjct: 376 PRGTLIHEYTIDDGGKVENANFIVATTHNNGAMNKGVT--SAAETFIDGPEIPEGILNKM 433 Query: 537 VRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 I +DPC++C+ H + G + +++ Sbjct: 434 ESVIRCYDPCLSCSTHAI---GEMPLELEL 460 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 107/552 (19%), Positives = 183/552 (33%), Gaps = 110/552 (19%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 T++ V RIEG +++C +NG++ + +RG E I++++ P DA + RICG+C Sbjct: 3 TVNLVERIEGEAKLNCSWKNGIIIDSRIDFLNFRGFEYILEDKSPLDALVYTPRICGICG 62 Query: 66 TTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 H ++V E A +++ A+ +R I L HI FY D + + Sbjct: 63 QAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIKLN 122 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S L E KV ++ +A G W H + +P Sbjct: 123 S----------NDLNIYEPLKGKKWLEACKVASETIKALA------IIAGQWPHSSYMIP 166 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 V L + Q + + N + L +++ Sbjct: 167 GGVMSDPTKMDL--INMQNYLQIAINFFE-----------DSIVNTSLDNYLSFTSVDNF 213 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 I + D AF E GK ++S+ E K F Sbjct: 214 EKIGGDLKLFKDL-------------AFKYELQNYGKSYNRFISLSETNLFKKG---RFS 257 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 I ++ + I E++ ++ + Sbjct: 258 SKVI---------------NKIDLSKILENSDSTF-----------------TLSGDNTQ 285 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 K++W K+ T+ E GPLA ++ + ++ S Sbjct: 286 KHTWSKNVTYDDAFFETGPLARAIISNRKFIKDIHKNFDD-------------------S 326 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 R++ R L + +N S + T I + V +EA RG Sbjct: 327 AFTRVLARLDELAFLLEDTKNLISKVNTKEASFIKPKISLNKIDKV---EAVSAVEATRG 383 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + I+ G I Y + P+ WN GP N + G +++++GT D + Sbjct: 384 SLYHKIDIEKGKIKLYDVITPTVWNLGPSNKKEQ-GIAQKAIIGTSSIDI-----AKIIL 437 Query: 541 HSFDPCMACAVH 552 SFD C C H Sbjct: 438 RSFDVCSVCTTH 449 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 117/577 (20%), Positives = 179/577 (31%), Gaps = 111/577 (19%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS+++ IDPVTRIEGH ++ +++ V A +RG E+ V+ +A M +QR Sbjct: 1 MSRKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQR 60 Query: 60 ICGVCTTTHALSSVRAAESALN------IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 ICG+C +H L +A + + I V A+ +R + A H ++ L Sbjct: 61 ICGICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIV 120 Query: 114 LDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + + A A + Sbjct: 121 PEMLFGMDAPPAQRNVLGLI---------------------------------------- 140 Query: 174 HPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANP--INLDG 231 E N V + + ++ V+ + GK H N GGV N I Sbjct: 141 --------EANPDLV---KRVVMLRKWGQEVIKAVFGKKMHGINSVPGGVNNNLSIAERD 189 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 + E L+ + ID D + Y D + L + D Sbjct: 190 RFLNGEEGLLSVDQVIDYAQDGLRLFY--DFHQKHRAQVDSFADVPALSMCLVGDDDNVD 247 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 +G I + D R H E W P Sbjct: 248 YYHGRLR-----IIDDDKHIVREFDYHDYLDHFSEAVEE--------------WSYMKFP 288 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 +V VGPL M V + Q L A + T N Sbjct: 289 YLKELGR------------EQGSVRVGPLGRMNVTKSLPTPLAQEALERFHAYTKGRTNN 336 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 TL R + ++++ L + D P T +G Sbjct: 337 M--------TLHTNWARAIEILHAAEVVKEL---LHDPDLQKDQLVLTPPPNAWT--GEG 383 Query: 472 VGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 VG +EAPRG L H + G I+ VV +T N+ N E L G Sbjct: 384 VGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMN-RTVRSVAEDYLGGHGEITE 442 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 + I ++DPC++CA H + G + V V Sbjct: 443 GMMNAIEVGIRAYDPCLSCATHAL---GQMPLVVSVF 476 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 267 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 214/229 (93%), Positives = 223/229 (97%) Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANML KLAAGRESTQ KL Sbjct: 1 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRESTQTKL 60 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 NEI+A+YQKLTG TLE+AQLHSTLGRIIGRTVHCCELQ++LQ+QY+ALI NIGKGD+TTF Sbjct: 61 NEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDYTTF 120 Query: 459 VKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 518 VKPNI ATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY Sbjct: 121 VKPNIQATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPY 180 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 EQSLVGTP+ADP KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL Sbjct: 181 EQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 229 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 107/576 (18%), Positives = 198/576 (34%), Gaps = 132/576 (22%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M++ + I P TR+EGH ++ ++++ G+V + W S T RG+E++ + I Sbjct: 1 MTKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIAS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R+CG+C H L+S A E+++ ++P +A+ +R I+ AA+ H +H L D+ Sbjct: 61 RVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALH-NILILPDFYI 119 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + + + V +++ + + G A G HP+ Sbjct: 120 PGTEKKFNLFANEQPARSV-------MARIVRIREIAQTI------GAIAGGEAIHPSNP 166 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + +P + L E Sbjct: 167 RIGGM-------------------------------------YYNVSPRAKQKMADLAKE 189 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 L+ + ++ + D + + + +A + P K G Sbjct: 190 GLVLVHEQMEFMFDVIRNMQNREFVEVAGK------------------QIPLPKKLGYH- 230 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA------PQAPWEGTTIPA 352 G + A + + + + +E+ WY E P P GTT Sbjct: 231 -NQGVMATASMYGSSSLDDNPT-WDFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTTKIG 288 Query: 353 YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNT 412 + V PT+ G+ VEVGP A + T +E Sbjct: 289 TKANPQMEACTGV--PTYDGQPVEVGPRARLA---------TFKNFDEK----------- 326 Query: 413 LEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK-G 471 T + I R + + + L + + V + G+ G Sbjct: 327 -------GTFAQHIARQMEYPDCCYTILRCLDNL-------NTSGKVLADHIPQGDGSMG 372 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 EAPRG H +KDG + Y +VP+TWN ++L G P Sbjct: 373 WAANEAPRGSNIHLARVKDGKVLWYDMLVPTTWNF---------PTCSRALTGAPWQI-- 421 Query: 532 KPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 + ++DPC++CA H++ + E + + L Sbjct: 422 ----AEMVVRAYDPCVSCATHMIVVNEEEKIVTQKL 453 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 258 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 105/574 (18%), Positives = 188/574 (32%), Gaps = 121/574 (21%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +++TI P++RIEGH + +++ G V+ A T RG E+ ++ +A I RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C T H L+S +A + VP A +R ++ H H +H + L+ D++ Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPD 121 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A + + E K+ +I + G HP +P Sbjct: 122 YNPALRNVVGLVQA--NPELAKMAIEGRKIGQRITEET---------GGKPIHPVSAVPG 170 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ LE + +A + Sbjct: 171 GMSFALANEKRAELEAMAKRSVEIARIS------------------------------WP 200 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + +DK +D V V V + +F ++NG F Sbjct: 201 VVMKMMDKYADLVNSVGLVQS------------------------DFVGLTRNGKLEFYD 236 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + +Y + I+E+A+ P+ + Sbjct: 237 GNVRAIDSGGVQLADFPGKDY-LSYIEETAE-----------PYSYMKFTKLKKGN---- 280 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 VGPLA + + + G L E A Y ++ +L Sbjct: 281 -----------GFYRVGPLARVNIVDSIGTPEADKMLAEFRAKYGRVPQQSLLY------ 323 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 RT+ + + V+ + +G+G +EA RG Sbjct: 324 ---HAARTIEYMAASETALSLLQD------SAITDKNVRTAVTGVKNTRGIGVVEATRGT 374 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + D G I+ +V + N+ + Q L+ + + Sbjct: 375 LIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQS--SQKLIHGDNVSEGTLNRIEMVV 432 Query: 541 HSFDPCMACAVH----------VVDADGNEVVSV 564 ++DPC++CA H VVD++GN + V Sbjct: 433 RAYDPCVSCATHAIGRMPVQLTVVDSEGNVIREV 466 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 103/549 (18%), Positives = 177/549 (32%), Gaps = 104/549 (18%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M Q I I PVTRIEGH I ++++ G V + RG E+ V+ + + IV R Sbjct: 1 MGQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C H L+S +A + + P + +R ++ A + D I+HFY L+A D+V Sbjct: 61 ICGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + + GV+ H +++ K ++ G HP Sbjct: 121 PDSDYGVRN-----VIGVAKAHPELAGRVVRMRYATKMILEK------FAGKAIHP---- 165 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 VGG + + + Sbjct: 166 ------------------------------------HAGVVGGFSRVLLEEDR------- 182 Query: 240 LMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLF 299 + F+ K+ + +E +P++L ++ T +G+ Sbjct: 183 ----REFLGKMKEMLEFALFTIDFAKTQVFPKYLDAVASLG-VINTGFIGTVDDHGALNL 237 Query: 300 PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA--PWEGTTIPAYDGWS 357 G I L D Y D + P P W+ Sbjct: 238 YDGKIR---LMKPDGSFVDFDPQD------------YLDYLGEHVEPHSYGKFPYARCWN 282 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + + P LA + V Q +L E + + Sbjct: 283 EG----FSLDPLQPRGIYRANTLARINVADKMATPRAQAELEEFREKFGR---------P 329 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 TL R + + I + V+P +GVG LEA Sbjct: 330 AQFTLLHHWARLIEEVYACEHAIELLED--PEITDPNVRAKVEPKA-----GRGVGCLEA 382 Query: 478 PRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG L H G+++ +V +T N GP + + + ++L+ V D ++ Sbjct: 383 PRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQ--AARTLIQRGVVDETILNKI 440 Query: 537 VRTIHSFDP 545 + ++DP Sbjct: 441 EMAVRAYDP 449 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 101/557 (18%), Positives = 165/557 (29%), Gaps = 108/557 (19%) Query: 2 SQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 S+ I IDPVTRIEGH ++ + E+G + A RG E+I+ + I RI Sbjct: 10 SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKILVGMEANRMPHITARI 69 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC T H +++ A + A + P A +R ++ H H H + + L D V Sbjct: 70 CGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPDLVLGL 129 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A A + + V ++ ++V Sbjct: 130 DADPAIRNVVGIVQA--NPEVAKKALRIRTVGQRLNEIVGGRGTHPV------------- 174 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 GG+ ++ + +L + Sbjct: 175 ------------------------------------TSVAGGITFVLDSEKRAML-QSLV 197 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 K L+ V+Q+ A +W+ L Sbjct: 198 DEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGTVLD----------NRVSLI 247 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G I D + + +Y ++ S+ K + G Sbjct: 248 QGNIRAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVG---------------FKKGG 292 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 VGPLA + E ++ E++ L H Sbjct: 293 LL----------HDYRVGPLARINAMQQFSTEWANREMEEMLK---------LGGYPCHI 333 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TL + + V + + N + VG EAPRG Sbjct: 334 TLFQAYAKLVEMIWAIERADDILRDPAVNGET--------RVPVKFQGGRAVGHSEAPRG 385 Query: 481 MLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 L H I +DGI+ +V + N N + +S V D + + Sbjct: 386 TLIHDYEIDEDGIVRAANLIVATQQNYA--IINRSIEHAAKSHVIGKSDDQALLNAIEFS 443 Query: 540 IHSFDPCMACAVHVVDA 556 I +DPC++CA H V A Sbjct: 444 IRCYDPCLSCATHAVGA 460 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 255 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 107/576 (18%), Positives = 178/576 (30%), Gaps = 106/576 (18%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I ++ G V A+ + G E+ + + V IC Sbjct: 19 KKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVSTIC 78 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GV H +SV+AA++ ++ A+ IR + AH DH Y L D+V + Sbjct: 79 GVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCGPT 138 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A A+ +L KV + LV + Sbjct: 139 ASPAERNLVGLVL---------------KVGADVGKLVLKKRYS---------------- 167 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 A ++ L G+ H GG + I + + L Sbjct: 168 -------------------AVKIFELTSGRPSHPVAALPGGWSKRITEEERKEI-LACAD 207 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 D ++V + +A + T +N + Sbjct: 208 DCIELAKLTLDVFDKVVLQNKEYMALVTGDVYKVVTNY--------IGTVDENDKVTYYD 259 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + D + + + I E PW P +G Sbjct: 260 GTQKIVD-TKGNELGRFKGIQYLDYIAER-----------TLPWSYQKAPYLKKLGWNGL 307 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 + + VGPLA V Q +++A + +H T Sbjct: 308 VDGDGTSIYS-----VGPLARFNVGSGFDTPLAQEAYEKMLAAFG--------GKPVHHT 354 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 L R + + ++ S +GVG +EA RG+ Sbjct: 355 LAYHWTRAIELMHAAETVKKIASDESITDPNVRQELGTP-------VGEGVGIVEAARGV 407 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H D GI+++ +V +T N GP N QS + D V Sbjct: 408 LIHHYKTDDKGIVTDANLIVATTHNKGPMNIAVKR--AAQSFIKNGKVDEGILNLVEIAY 465 Query: 541 HSFDPCMACAVH-----------VVDADGNEVVSVK 565 +D C AC+ H ++D G V S++ Sbjct: 466 RPYDLCFACSTHTLPGRIPVRIDIIDHHGELVKSLR 501 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 184/555 (33%), Gaps = 129/555 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M + + + +IEG +D NG + + +RG+EEI+ +DPRDA +I R+ Sbjct: 1 MKRTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGFYRGIEEILVGKDPRDALVITPRV 60 Query: 61 CGVCTTTHALSSVRAAESAL---NIDV--PVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 CG+C H +++VRA E+ +V A+ IR L+ +HI Y Sbjct: 61 CGICNHAHLIAAVRALENGYASAGWEVVLSPKAKAIREFTLSCELLQNHIKWMYMTIFP- 119 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHP 175 + + E V+ + L IFA G W H Sbjct: 120 --------------------NLERYLKIESSENYAVKASYFSTTITKALAIFA-GQWPHS 158 Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 + +P V Q D + +LL + + G L + Sbjct: 159 SYAVPGGVT---------CDPTQLDIIQAQSLLEECVRFFEQMLTGCTLEAY----LSIE 205 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 ++ L +I+ KL + +G+ ++ + P Sbjct: 206 SVSSLHHIEGDFGKLLHLLGSN-------------GMAKKGQSYDRFIVFADSPLSPAGK 252 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG 355 S I + + K + E Sbjct: 253 S------------------IATSVSKVDTKYVVE-------------------------- 268 Query: 356 WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + K S K+ ++ + EVGPLA +V ++ + + Sbjct: 269 --SEQKGSMAKAVSYKNRMYEVGPLARGMVSKEPIVKNLHKRYKD--------------- 311 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 S + R+ R +L + + ++ + D + + EF+G G + Sbjct: 312 ----SMMTRVFARIHEVAQLLEKNREMLKSI-----RVDEPSCTLSDTLKLYEFEGTGTV 362 Query: 476 EAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 EA RG L H + +G I+NY+ + P+ WN + + G +++VG+ + E Sbjct: 363 EAARGSLIHRTTVSNGKIANYEIITPTQWNLSHGDEKEK-GIAVKAMVGSQSME-----E 416 Query: 536 VVRTIHSFDPCMACA 550 +FD C C Sbjct: 417 ADFIFRTFDVCSVCT 431 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 101/576 (17%), Positives = 183/576 (31%), Gaps = 106/576 (18%) Query: 3 QRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I I+P+TR+EGH +I +++ G V+ A+ +RG E ++ + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 GVC H +S +A++ ++ A+ IR + L AH DH Y L D+V Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFVVGIE 124 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A A+ + K Sbjct: 125 ADPAERNLVGLIKK---------------------------------------------- 138 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + V L+ + A +V+ +LGGK H GG + I D Sbjct: 139 ----VGVDVGKTVLKKRFAAVKVLEMLGGKPIHPVAGLPGGWSKRITEDERK-------- 186 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 I++ ++ + E +V VI + D + G Sbjct: 187 EIEALAKEMVELGELTLQVFEDVILKNEKLLELITADYYRVVVNYLGTVDDAGKVNYYDG 246 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 + + + + + I E PW +P + G Sbjct: 247 --WQVGIDTKGNEVFRFKGKDYLNYIAERV-----------VPWSYVKMPYFKQLGWKGF 293 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 + + VGPLA + + ++ + ++ +H Sbjct: 294 VDGEGTSLYS-----VGPLARCNI-GDMNTPKAKEAQEKMFDVLKE--------RPIHYI 339 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + R V + + + T+ +GVG +EAPRG Sbjct: 340 MAYHWARAVELLNAAERVLELAQD-------PEITSPDVRAELGEVTGEGVGIIEAPRGT 392 Query: 482 LSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H ++GI+++ +V +T N P N + + + V Sbjct: 393 LIHHYKTDENGIVTDANLIVATTHNHAPINI-AIKKAAQHFIQENKEINDKLLNYVEIAY 451 Query: 541 HSFDPCMACAVH-----------VVDADGNEVVSVK 565 +D C ACA H V D++G + +++ Sbjct: 452 RPYDICQACASHALPGRYPLEVLVYDSEGELIKTIR 487 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 93/548 (16%), Positives = 177/548 (32%), Gaps = 132/548 (24%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG +++ + R +E+I++ + DA +I R+CG+C Sbjct: 2 IELIEKIEGEAKLNFSFAGEEIDFVDIEFMTARNIEKILEGKSALDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 H +++V+A E NI++ A+ IR + L +H FY + L+A Sbjct: 62 AHLIATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKA 121 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 M K ++ G + H + + V Sbjct: 122 TYP-TQLMAKAIA----------------------------VFGGQYPHTSYAIVGGVVC 152 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 + ++ + + N + D L + + + Sbjct: 153 DITE--IDIIKIKHYIEETIKFFE--------------TNLVQADTKDFLVCDNVDKVLK 196 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIE 305 L D + ++ ++L GK +++ E +K S Sbjct: 197 KNGDLPDILREI----------KKKKYLDHGKSYDRFIAFGENSYFTKGKSH-------- 238 Query: 306 NADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWV 365 T + I ++E D S Sbjct: 239 ---------KTITTHNISIDYVKE----------------------------QDNLNSLA 261 Query: 366 KSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRI 425 K+ T+ K EVGPLA ++ + + + + + RI Sbjct: 262 KNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGD-------------------NIFSRI 302 Query: 426 IGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFLEAPRGMLSH 484 I R +L + + L ++++PNI + G +EA RG L H Sbjct: 303 IARVCEIPQLLNHSKELLEKL-----DLSEPSYIEPNIDISQINASGESAVEAARGSLIH 357 Query: 485 WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 + +++GII NY+ + P+ WN G +++G +Q++VG +FD Sbjct: 358 KVELENGIIKNYEIITPTQWNLG-NGTRENLGVSQQAMVGLKDVKT-----AELVFKTFD 411 Query: 545 PCMACAVH 552 C C H Sbjct: 412 VCSVCTTH 419 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 102/591 (17%), Positives = 186/591 (31%), Gaps = 135/591 (22%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 M + ITIDPVTRIEGH RI +++ G+V T RG E R + + R Sbjct: 1 MPKTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTAR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 CG+C +H L+S +A + L + +P A +R ++ H + F+ L++ D + Sbjct: 61 TCGICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLG 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A + ++ + +A ++ HP + Sbjct: 121 MDAAPEQRNIFGLAAAR--PEVAKEGIALRRFGQQLIERLAGKRI---------HPDWVV 169 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 P GGV+ P++ + + E Sbjct: 170 P----------------------------------------GGVSRPLSRENGAAIAAEL 189 Query: 240 LMYIKSFIDKLSDF--VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 +++ + L V + + + A A F WL + G Sbjct: 190 PGMLQAAQNNLVLLQGVLENFTAEIAHFANFPSGWLALAG---------------EAGQL 234 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 + G + D + + + E ++ Y P Sbjct: 235 EYYDGPLRLLDQQGEELFSEADPLRYQQQLAEQSEADSYLKSPYHRP----------QGP 284 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + G Y VGPLA + G +E +A +++L+ + Sbjct: 285 EAGLY-------------RVGPLARLNAARRCGTPLA----DEALAAFRELSPQGPVTSS 327 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEF---KGVGF 474 H R + + +Q + T P + AT +GVG Sbjct: 328 FHY----HYARLIEIIHGLEKIQQLLAD----------DTIYDPRVRATAGANAPEGVGI 373 Query: 475 LEAPRGMLSHWMVIKD-GIISNYQAVVPSTWN------------------SGPRNFNDDV 515 EAPRG L H I + G IS ++ + N +G + Sbjct: 374 CEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAIQRGLKQAARAFINGNGENDGESGK 433 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 + + + + +DPC++C+ H + G ++V++ Sbjct: 434 RAESREIAENKEIREGLLNRIEAVLRCYDPCLSCSTHAL---GQMPLAVEL 481 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 91/555 (16%), Positives = 173/555 (31%), Gaps = 128/555 (23%) Query: 1 MSQR-ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQ 58 M++ I +D + R+EGH + IE+G V + R E +V+ R + I Sbjct: 1 MTKTAIHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C+++H ++ ++A E ++V + +R +++ +H H + +A D Sbjct: 61 RICGICSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPD--- 117 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 F P + Sbjct: 118 ------------------------------------------------FLGMPSVFPLAQ 129 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 PE+ + QAL + N + +GG++ H VGG + I L + Sbjct: 130 TDPEL-------FEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLELA-D 181 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 ++ F + D D A + +P + + +F Sbjct: 182 KMDAAMDFALEAVDLFRGFEVPDIATAGDMLA-----------MVEDDYYPVECSDQAFF 230 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 G + + +QE E +P Sbjct: 231 LNAGIV-----------------FDANEVQEHI--------------EEHAVPHSAAL-- 257 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + G LA + ++ + Sbjct: 258 ------LARVRETQSPYFTGALARVNASWQNLGQNAKVAA-----------AKAGLRPPE 300 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + + + V + D + L G + P + VGF EAP Sbjct: 301 ANPFMNNVAQAVEIVDALDRCADLCRKLAE---PGAIASSSLPVPFEVKAGRAVGFTEAP 357 Query: 479 RGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG L H + + +G +++ + P+ N N D+ + LV A+ LE+ Sbjct: 358 RGALFHDLTLDAEGRVTHASILTPTAQNVA--NLEADMRLLAEKLVADGAAEDVVRLEIE 415 Query: 538 RTIHSFDPCMACAVH 552 + + ++DPC++C+VH Sbjct: 416 KLVRAYDPCLSCSVH 430 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 90/565 (15%), Positives = 172/565 (30%), Gaps = 145/565 (25%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I + +TR+EG I ENG + R +E I+K ++ + RIC Sbjct: 2 KKIE-NLLTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRIC 60 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C + +S V+A E A + V + +R + H VH + L D+++ S Sbjct: 61 GICPVAYQISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGS 120 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + EF K+ IK+ Sbjct: 121 VFE----------------VGKDSPEFLKIGTIIKNA----------------------- 141 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + ++ +GG+ H +++VGG + D L + Sbjct: 142 -------------------GSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEK 182 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 + + L F + D +++LS+ E Sbjct: 183 ALDLSVYALKRF-SEFNFPDNE-------------IPDIHFLSLEEEEYP---------- 218 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 I D+ S + + +E+ + HS Sbjct: 219 --ILKGDIVSNKGLRLTKEEFDNVIKEYQVDHS--------------------------- 249 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 + ++ + VGP++ +I + ++ Sbjct: 250 -TAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDIDLY-----------PPIKNS 297 Query: 422 LGRIIGRTVHCCELQDILQNQYSAL-ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 I+ R V + + ++ D+T E G G EAPRG Sbjct: 298 FKTILIRMVEIIHSLERSIDLIKDYRKESLKNADYTV---------KEGTGYGVSEAPRG 348 Query: 481 MLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 +L H +G I V P++ N D + ++++ + Sbjct: 349 ILWHKYSFDSEGKIKKADIVPPTSQN------QDIMEVSVRNMIMNRENIEEILKTGEKV 402 Query: 540 IHSFDPCMACAVHVV---DADGNEV 561 I +FDPC++CA H + + G ++ Sbjct: 403 IRNFDPCISCATHFLKIGEIRGKKI 427 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 235 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 100/516 (19%), Positives = 173/516 (33%), Gaps = 107/516 (20%) Query: 4 RITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+P++R+EGH ++ + ENG T RG E+ V R + IV RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C T H L+SV+A ++A +++P A+ +R ++ + H H +HFY L+A D Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPD------- 115 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 F G PA++ Sbjct: 116 --------------------------------------------FVLGPDADPAIRNIVG 131 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 V A QA+ ++ ++V +GGK H GG A + + Sbjct: 132 VIDKAPDVAKQAIALRKFGQKIVEAVGGKAIHPVTGIPGGQAKRLTEEER--------DE 183 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 + D++ ++ + +I +++ + K + + K+G F Sbjct: 184 LLKDADQMIEYAKN----GVELIKQLNEQYMEQIKTLGVIDTY--YLGLVKDGKHNFYDD 237 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 + + +EY + I E P+ P Y Sbjct: 238 TLRFLSPDGKEKVEFKPEEY-LNYIGEYV-----------VPYNYVKHPYY--------- 276 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 K + VGPLA + V + E + I+ +L Sbjct: 277 ---KKVGYPEGVYRVGPLAMLNVCDEMETPLAEEYRKEFLEIFGFPANQSLAYNH----- 328 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R + E + + +I D V+P GVG + APRG+L Sbjct: 329 ----ARLIELVEACEKAKILLED--NDITSDDIKADVEPKA-----GNGVGVVYAPRGVL 377 Query: 483 SH-WMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGP 517 H + ++GI+ +V +T N Sbjct: 378 IHNYETDENGIVVKANMIVATTHNVPTMEKAIQQAA 413 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 234 bits (595), Expect = 9e-60, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 189/566 (33%), Gaps = 151/566 (26%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +IT + R+EG + + E G ++KA GT R I+K + D+ +++ R+CG+ Sbjct: 2 KITKTILNRLEGEVELKLEYSKGKIAKAHILGTSNRDFSSILKAKPYLDSIILIPRVCGI 61 Query: 64 CTTTHALSSVRAAESAL-----NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H ++SV+A E A + + A +R I L + +HI Sbjct: 62 CGHAHLMASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIR------------ 109 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 ++ E K+ + D + F W Sbjct: 110 --------------------WFYAYFMSEIPKLDRNMVDYL------PFDGEKW------ 137 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + + +++AL GG+ PH GG+ + L Sbjct: 138 -------------RRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSF 184 Query: 239 RLMYIKSF--------IDKLSDFVEQVY-------KVDTAVIAAFYPEWLTRGKGAVNYL 283 +KS IDK F + D +++ + ++ +G +L Sbjct: 185 CKELLKSIETYIIGISIDKYLSFSKDELLNHKEGDIGDFIRLSSTF-DFFHKGIAYKRFL 243 Query: 284 SVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA 343 + EN S+ + E+ K I+E Sbjct: 244 TGGSI-------KGYVDAAVFENGIKESFDVKNIDTKEHEFKKIKE-------------- 282 Query: 344 PWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVA 403 + + K E GPLA + + L E Sbjct: 283 ---------------------ITGAVYNKKRFETGPLARKINSSNSL---FLELLEEFGD 318 Query: 404 IYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI 463 S R++ R L ++++ A+ +++KP I Sbjct: 319 ----------------SLFLRVMARVDEIVSLTLLIKDALDAIDIR-----KPSYIKPPI 357 Query: 464 PATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 KGVG +EA RG L H + I++G + +Y+ V P+ WN G + +D+ P ++S+V Sbjct: 358 KEPFTGKGVGIVEAARGTLIHEINIENGFVKDYKIVTPTLWNLGNYD--EDMSPAQKSIV 415 Query: 524 GTPVADPNKPLEVVRTIHSFDPCMAC 549 G +E ++ SFD C +C Sbjct: 416 GLSSD-----VEAYLSLRSFDVCASC 436 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 234 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 174/551 (31%), Gaps = 155/551 (28%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I+ + +IEG ++ + + ++ +RG+EEI++ RDP DA +I RICG+C Sbjct: 3 IELLEKIEGEAFLEFQKDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICGH 62 Query: 67 THALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQAD 126 H ++ ES +++ A+ IR I +HI FY Sbjct: 63 AHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYL---------------- 106 Query: 127 PTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLI 186 V LN P +FTKV + I + +L +G W H + Sbjct: 107 ----------VIFHELNIPYDFTKVHHLIVTI---NKLLALFSGQWPHSSY--------- 144 Query: 187 AVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGL---GVLNLERLMYI 243 VGGV + L + Sbjct: 145 -------------------------------CVVGGVTCDPTSLEIHQAKTLIQQIRDQF 173 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 I KL D + + E L GK +++ Sbjct: 174 IQLIGKLHDPLNLTNDLQKLYRTLQEKELLLVGKSHDRFITFS----------------- 216 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 +++ +S+ + + + + I+E ++ K S Sbjct: 217 -QDSHVSNIKLLHGQKRKTKLTLIEE----------------------------NEQKRS 247 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + K+ T+ GK E GPLA ++ + + V + + + S Sbjct: 248 YAKNVTYNGKYYETGPLARLM-----------QQTDPFVRYFHRRFKD--------SITT 288 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF--LEAPRGM 481 RII R L + + + +P++ + G +EA RG Sbjct: 289 RIIARIYEVSLLIEKIIDHL----------ATIDLSQPSVVESKMQDGTAIISIEAARGS 338 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H I G I Y + P+ WN + ++++VGT Sbjct: 339 LIHQATIHQGKIETYNFITPTQWNLSNGTSQ-NPSVIQKAIVGTSDEKIANL-----IFR 392 Query: 542 SFDPCMACAVH 552 SFD C C H Sbjct: 393 SFDICSVCTTH 403 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 92/550 (16%), Positives = 171/550 (31%), Gaps = 138/550 (25%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 I + +IEG +++ + + R +E I+K + DA +I R+CG+C Sbjct: 2 IKIIEKIEGEAKLNFNFKENKIDFVDVEFMSTRNIENILKGKRAFDALVINPRVCGICGH 61 Query: 67 THALSSVRAAESAL-NIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 H +++V+A ES N+ + A+ IR + L +H FY + L+A Sbjct: 62 AHLMATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKA 121 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 + +A G + H + + V Sbjct: 122 TYP-----------------------SQLMSKAIA------VIGGQYPHTSYAIVGGVAC 152 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 + ++ Q + + + + L+ ++S Sbjct: 153 EITE--IDLIKVQHYIAQTLKFVE----------------------------QNLLKVES 182 Query: 246 FIDKLSDFVEQVYKVDTAVI--AAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + ++ +Y D I E L GK ++S E K S Sbjct: 183 EVFLKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKS------- 235 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 ++ H+ I D S Sbjct: 236 -----------------------VKTKVTHN---------------ISLVDVKESQITSS 257 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + K+ +F K EVGPL+ ++ K + S Sbjct: 258 FAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGD-------------------SIFS 298 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG-EFKGVGFLEAPRGML 482 RI+ R +L + + + ++++P+I + G +EA RG L Sbjct: 299 RILARIYEISQLLEHSRGLIKKI-----DLSQPSYIEPSIDISKLSGSGYSAVEAARGTL 353 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H + ++ GII NY+ + P+ WN ++ G ++++VG S Sbjct: 354 IHRVELESGIIKNYEIITPTQWNLS-GGTRENHGVSQRAMVGLSDVKI-----AELVFKS 407 Query: 543 FDPCMACAVH 552 FD C C H Sbjct: 408 FDVCSVCTTH 417 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 162/457 (35%), Gaps = 107/457 (23%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS RI + P R+EG L I + + G V+ A + ++RG E I++ ++P DA + RI Sbjct: 1 MS-RIVVGPFNRVEGDLEIKLDTDQGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ + +++S RA +++D+P+N Q N++LA D + HFY D+ Sbjct: 60 CGICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGI 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + W + F + ++ Sbjct: 120 YSNE--------------PWFDSVESRFKAQKGSAAKVM--------------------- 144 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL----- 235 L + + ++ ++ GK PH +L GG A PI L Sbjct: 145 --------------LPARSEFLHLMGIMAGKWPHSLSLQPGGSAKPIEAQERIRLLAILA 190 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFY----------------PEWLTRGKGA 279 + + + F D L E + + + G+ Sbjct: 191 SFRKFLEHTLFGDDLEAIAELGSWNELQNWREKHDWQHSDFTRFLHLSDQLHLASMGRAT 250 Query: 280 VNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD- 338 +LS +P LF G ++ ++ KGI E +SW + Sbjct: 251 DQFLSYGNYPDPQGG---LFKAGASFAGAVT----------DFDQKGITEDLAYSWMQSV 297 Query: 339 EAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 P P G T P+ D ++ YSW K+P + +EVG LA L+ G + + Sbjct: 298 NGPVHPAAGNTEPSLD---NEAAYSWCKAPRLNRQVMEVGALARQLIN---GHPLAADLV 351 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCEL 435 + A + RII R + Sbjct: 352 SRNGA----------------NVESRIIARLLRARYC 372 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 132/717 (18%), Positives = 226/717 (31%), Gaps = 171/717 (23%) Query: 2 SQRITIDPVTRIEGHLRIDCEIEN--GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++ + I+P+ RI+ L I ++ V+ A+A+ M+RG E ++N+ D M+ R Sbjct: 14 TKPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRNKPGPDVIMLSSR 73 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILA--AHTTHDHIVHFYQLSALDWV 117 CG+C H A E A + P + IILA A T+D H L DW Sbjct: 74 ECGICGEHHQFIERIAQEMAQGGNAPPPL-GLETIILANDAAMTYDATAHLTALGGPDWS 132 Query: 118 DITSALQAD-PTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + + P++ E+ + + + + + +A +L + Sbjct: 133 SLFFKVAGYFPSQIYEIAQQTPLSKVAQESQAFPMGAPTQLEMAGVKLKTVS-------- 184 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLG--- 233 L + I A++L+ R + L + PH + GG+ P ++ L Sbjct: 185 -DLMDALVPIIGAYFLEGAYSWRILHEAELLYYLRVPHPITMVPGGIGVPATVENLQRYF 243 Query: 234 -------VLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP 286 ++++ + L+D+ + G N++S Sbjct: 244 QRMVDGTAWLMKQMAVYEYLTLFLADYNNTFGIQALYDKLNGTLGFAEEGNRPGNFVSYG 303 Query: 287 -------------EFPTDSKNGSF----------LFPGGYIENADLSSYRPITSHSDEYL 323 +G++ + G + + +S + ++S + Sbjct: 304 QSDVSEAPSVTPSSTSVMPYDGTYENMGAWGRARVVKPGLVIQPNSNSPPQLVTNSLIDI 363 Query: 324 IKGIQESAKHSWY--------------------------KDEAPQAPWEGTTIPAYDGWS 357 GI+E + S+Y + PW T+P Sbjct: 364 NLGIREFVESSFYTPWYENGSFNSEVPSSVSGIEEDPIGNKVSYYHPWRKWTMPNPQPRP 423 Query: 358 D----DGKYSWVKSPT---FYGKT--------VEVGPLANMLVKLAAGRESTQ------- 395 YSW SP + VE P+A M ++ + T Sbjct: 424 VPMAYPAPYSWAVSPRIVPYQNHKPITNLFYNVEADPMAVMYAQVLQPQAPTPIYTSSYP 483 Query: 396 ------------------NKLNEIVAIYQKLTGNTLEVAQLH-------------STLGR 424 +N E+ + + + R Sbjct: 484 SGFEVSYNSNEMSATFYLPTVNSPRISLPPEFQQGSEIEFKYVAPYALSGGKIVTNAIER 543 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPA-------TGEFKGVGFLEA 477 + R + + + IT + KG P TG GVG EA Sbjct: 544 MRARAFEAGLDGMGMWIAWMSAITYLKKGMTQVSSMPPSSWTYKSNTNTGVALGVGMKEA 603 Query: 478 PRGMLSHWMVIKDGIISNY-----QAVVPSTWNSGPR---------------NFNDDVGP 517 PRG H V G N Q + P+T NSGPR + G Sbjct: 604 PRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYDDGIQTIKPASPTHGAGT 663 Query: 518 YEQSLVGTPVADPNKP---------------LEVVRTIHSFDPCMACAVHVVDADGN 559 +E+ L+G P D N P E +T+ SFDPC C VH+V +G Sbjct: 664 FEEVLMGNP--DYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCFVCGVHMVLPNGR 718 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 221 bits (562), Expect = 7e-56, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 180/564 (31%), Gaps = 134/564 (23%) Query: 1 MSQRITID--PVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIV 57 MSQ I+I+ +TR+EGH I E+++G + R E ++ R +A I Sbjct: 1 MSQNISINVNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHIT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RICG+C+ H L+S++AAE AL I Sbjct: 61 CRICGICSCGHTLASIQAAEDALGIK---------------------------------- 86 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 PT+ + +L+ + + + + + F HP + Sbjct: 87 ---------PTEQTVLLRKLLLHYEQLDSHILHI--YLLVAPDLVGVPSFVPLIKSHPDV 135 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 ++AL +R N + +L G+ H + +GG + L ++ Sbjct: 136 V-------------IRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHK 182 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + L K D V + + L PEF D++ + Sbjct: 183 KLLALQK----------------DIEVTIELFKD-----------LKFPEFERDTEYIAL 215 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 + D Y + + S Y+ + +P Sbjct: 216 V--------NDEDEYPLLYGDIGSTDGYRV------SKYEYK---NVTNEFIVP------ 252 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 Y+ K ++ ++ VG LA + + + Sbjct: 253 ----YASAKRTKWHRESYAVGALARFNLNYEKLHPKAKEAA-----------ATLGLKPK 297 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDH---TTFVKPNIPATGEFKGVGF 474 + + + V C + L D + + +GVG Sbjct: 298 CINPYLNTVAQIVECVHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGA 357 Query: 475 LEAPRGMLSHWMV-IKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 +E PRG+L H + GI N ++P+ N+ N D+ ++ + Sbjct: 358 VEVPRGLLIHHYECDERGIFRNANCIIPTNQNTH--NIELDMLKLVPEIIN--QSPEEIR 413 Query: 534 LEVVRTIHSFDPCMACAVHVVDAD 557 L + + ++DPC++C+VH+V+ Sbjct: 414 LSLEMLVRAYDPCISCSVHMVEVK 437 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 96/550 (17%), Positives = 170/550 (30%), Gaps = 134/550 (24%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I I +TR+EGH I ++NG + +A WA R E ++K A + RICG+ Sbjct: 9 INIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGI 68 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C+ +H+L+++RA E A+ I Sbjct: 69 CSISHSLANIRALERAMQIT---------------------------------------- 88 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 P +E+++ ++ + + + G P++ E Sbjct: 89 ---PPPLAEVVRRLAMHGETLQSHALHL------------FFLAVPDFAGLPSVLPLMES 133 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + V LQ E + A G+ H +L +GG+ L L L L Sbjct: 134 HPQVVRAGLQLKELGNSISIAAA---GRATHPVSLVLGGITKAPELQQLKEL-LTMTQER 189 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 K + + F E+++ + F N ++ P G + G Sbjct: 190 KLALAQAVTFFEELHIPNFTRETEF--------ISLCNGVTYPAI-----GGQLVSSDGI 236 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 + + D +S Sbjct: 237 TRDENDYLLMTNEYTRD-----------------------------------------FS 255 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 K + G LA + Q H+ Sbjct: 256 TSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVAARFG-----------LQPVCHNPFM 304 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 I + V C + + + ++ G+ + G +EAPRG+L Sbjct: 305 NNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTP------QAGAATGAVEAPRGILY 358 Query: 484 HWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 H+M D G++ ++P+T N+G N DD+ L+ D L+ + S Sbjct: 359 HYMETNDEGMVVRADCIIPTTQNNG--NIYDDLQALAAELLREGKCDGEIQLQCEMLVRS 416 Query: 543 FDPCMACAVH 552 +DPC++C+VH Sbjct: 417 YDPCISCSVH 426 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 183/567 (32%), Gaps = 138/567 (24%) Query: 4 RITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +I I+PV+RIEGH ++ +++ G V A+ T +RG E+I+ + +V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C H ++++AA+ ++ A+ +R ++L AH DH L+ Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHT--LSLLAL--------- 110 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + D ++ + IF Sbjct: 111 -------------------------------ALPDFLSPEERNIFGVIR----------- 128 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 + L + A R++ +LGG+ H GG A + LG++ Sbjct: 129 ---NLGELGRELLRKRGYAVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERYSR-E 184 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 + ++ + +E + + T KG VN E + G + Sbjct: 185 LLDLGYRMVEVLEAALDMG-DGLELRAATLGTEKKGLVNLYD-GEQVVKDEEGKEVLRFS 242 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 E AD+ I E + Y P Sbjct: 243 GKEYADI-----------------ITEKSLSWSYSKLTEIKPLGE--------------- 270 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 K VGPLA + K A + ++ L Sbjct: 271 ----------KLYVVGPLARL--KTAELTPKASEIVKTYGVS--------------NNLL 304 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 R V + L + + N P +GVG +EAPRG L Sbjct: 305 YNHFARAVEIIYAAERLLELSQSYRGGRIQ---------NEPQKVAGEGVGIVEAPRGTL 355 Query: 483 SHWM-VIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE-VVRTI 540 H + GI+ +V +T N R N VG + +D E V I Sbjct: 356 IHHYWTDEKGIVRGSNLIVATTHNV--RAINHVVGKVAE-----RASDTRNLAEKVEVAI 408 Query: 541 HSFDPCMACAVHVVDADGNEVVSVKVL 567 +FDPCMACA H V +G + +++ Sbjct: 409 RAFDPCMACATHAV--NGVIPIEIQIF 433 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 75/446 (16%), Positives = 142/446 (31%), Gaps = 100/446 (22%) Query: 4 RITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 +I + R+EG + + E G + A+ +RG E I++N+ D +I R+CG+ Sbjct: 3 KIEKTVLNRVEGEIELKLIWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCGI 62 Query: 64 CTTTHALSSVRAAESA-----LNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 C H +++ A E+ I+V A+ IRNI L+ +H+ FY D++ Sbjct: 63 CGHAHLIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLK 122 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 AL+ + ++ +KI ++A G W H + Sbjct: 123 FNKALE-----------DFYPIKGKKWRKAVELSSKIVKVIA------IFAGQWPHTSYS 165 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGG-VANPINLDGLGVLNL 237 +P V Q + ++++ + + +G + +++ L Sbjct: 166 VPGGV---------MCEPTQTEIIEAISIVDSVLEYFEEDVIGMKIDEYLSITNLKEFLD 216 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + +K+ I++ + GK +L+V G Sbjct: 217 KSEGDLKTIIEEAMKL-----------------GFKDIGKAYDRFLTVCNINPFISEGI- 258 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 + I ++E S+ + Sbjct: 259 -----------------TRRKKCSFDINKVKEIETFSFLE--------------KGKPKF 287 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 KYSW K+P + GK E GPLA + + N + Y Sbjct: 288 SKRKYSWAKAPRYEGKPFETGPLARRINNE---DKLFLNLVKTFKGYYIP---------- 334 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQY 443 RI R +L ++ Sbjct: 335 ------RIWARVDEIGKLLLAVKEYL 354 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 79/553 (14%), Positives = 154/553 (27%), Gaps = 134/553 (24%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRIC 61 + I ++ + R+EGH I+ +E V +A R E I+ + + I RIC Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARIC 61 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 +C D + S Sbjct: 62 SIC-------------------------------------------------PDPYQVAS 72 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + + + + V E + I D++ S L +F K Sbjct: 73 SRAIEKAMGIRVDRQV---------EALRELQLISDVIHSHALHLFFLALPDFLGYKDAI 123 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 + AL+ +R N + ++ G+T H GG + L L + Sbjct: 124 GMAAQYPETVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLES 183 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 I + + F L + G Sbjct: 184 SIDGAREAIRVFSSLKM--------------------PEYSLDDNLYIAV-DPGEHYGYS 222 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G + P+ + D ++ Sbjct: 223 GEYLLVSDGTRHPVEKYMDLTNEVTVE--------------------------------- 249 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 +S K ++ G + G LA +L+ + + + Sbjct: 250 HSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPR-----------NP 298 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 + + + + L+ K VKP +G+ +EAPRG+ Sbjct: 299 FSNNMAQAIELLYSVQRAMDIIDGLLDEGIKDKLMVEVKPRA-----GEGIAVVEAPRGL 353 Query: 482 LSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 L H + D G + V P+ N+ + + ++L ++D L++ + Sbjct: 354 LYHHYKLDDNGKVVFANLVTPTAQNAANMDKYLRI--AVRNLKD--LSDDELKLKLEMLV 409 Query: 541 HSFDPCMACAVHV 553 ++DPC++C+VH+ Sbjct: 410 RAYDPCISCSVHL 422 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 99/567 (17%), Positives = 188/567 (33%), Gaps = 144/567 (25%) Query: 1 MSQRITI--DPVTRIEGHLRIDCEIENGVV-SKAWASGTMWRGMEEIVKNRDPRDAWMIV 57 MS I + D VTR+EGH I E+G + + W R E ++ R ++ + Sbjct: 1 MSHTIDVEGDLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVT 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 RIC +C+ +H ++S++A E+AL + V + +R + L T H++H L+ D V Sbjct: 61 SRICAICSVSHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLV 120 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 S L T E+ + + ++ N++ ++V G H Sbjct: 121 GEKSVLPLADTHEDEL---------ETVIDLHRLGNELTEVVT---------GRSVHAQR 162 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 +P ++ + LQAL L Sbjct: 163 LVPGGISQLPEESELQAL-----------------------------------------L 181 Query: 238 ERLMYIKSFIDKLSDFVE------QVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 +RL+ + +L+D + ++ +T I+ +PE +G + V E P Sbjct: 182 DRLVNSWDAVAELADLLAVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVGEIPVS 241 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 +D A + E +T Sbjct: 242 DY-------------------------------------------RDVANEYVVEHSTAK 258 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 + Y F ++ P A + Sbjct: 259 FARHERES--YMVGALARFNNNADQLAPRATEIADRFGLDAPVH---------------- 300 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 + + +++ E +++ G + + P I T +G Sbjct: 301 ----NPYLNNVAQLVEVAHLLGESVRLIEALLDD-----GLTPQSNYHVPEIDPTA-GQG 350 Query: 472 VGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 +G +E PRG+L H D G ++ V+P+ N G N D+ ++V P + Sbjct: 351 IGAIEVPRGVLFHEYAYDDTGEVTEANCVIPTNQNHG--NIQRDMETLVPTIVDHP--ED 406 Query: 531 NKPLEVVRTIHSFDPCMACAVHVVDAD 557 + + ++DPC++C+ H +D + Sbjct: 407 EIKHSLEMLVRAYDPCISCSTHYLDVE 433 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 127/283 (44%), Gaps = 33/283 (11%) Query: 258 YKVDTAVIAAFYPEWLTRGKGAVNYLSVPEF--PTDSKNGSFLFPGGYIENADLSSYRPI 315 DT +IA Y + L GKG Y++ F P+ ++ G EN +++ Sbjct: 1 MIPDTKIIAPAYTDALHFGKGCGRYVAWGVFERPSMEPTDRYMPAGVVWENLNVT----- 55 Query: 316 TSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG--------------- 360 + I+E HSWY ++ P EG T P Y + G Sbjct: 56 -----DPDEALIKEYVGHSWYVGDSDLNPVEGVTDPEYTSYYVPGSEHEENGHMIGTVND 110 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 +Y+W K P++ GK +E GP + +L G E + ++ + A+ L L + L S Sbjct: 111 RYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADL---GLTIPDLQS 167 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 TLGR+ R V C + +++ LI I +GD F P +G G EAPRG Sbjct: 168 TLGRVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPE---RLSGRGTGMWEAPRG 224 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 L H + +G I+ YQ ++P+TWN PRN GP EQ+L+ Sbjct: 225 ALLHTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 94/539 (17%), Positives = 159/539 (29%), Gaps = 164/539 (30%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 EG + ++G++ +RG+E+ + NR DA +I RICG+C H L++ Sbjct: 12 EGEAELKIYQKDGIIDFVEIFFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLATA 71 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 +A E+ALN+ + A+ +R+I +HI FY + S + Sbjct: 72 KAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYL----------TLYPTQIKDKSYI 121 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 LK ++ S + G + H + +P Sbjct: 122 LKALNIVKKISK------------------IIAIIGGQFPHNSYIIPG------------ 151 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 GV + + + L ++ I + D Sbjct: 152 ----------------------------GVTCDLTNLDIIKI-KNLLKKLREDIYTIID- 181 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 E D P+ GK +L + + NG+F Sbjct: 182 -ENGKSHDLEKFFENLPK--NIGKSLNKFLVLGDNLFFKPNGTF---------------- 222 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 ++E + +S++ K+ + + Sbjct: 223 -----------TNVKEFSNNSFF-----------------------------KNVLYNEE 242 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 EVGPLA Q T NT+ S RI R Sbjct: 243 YYEVGPLAR---------------------NLQNKTINTIYEKYQDSIYTRIFARLYEIL 281 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGII 493 + + L + L D T N GV +EAPRG L H + I++ I Sbjct: 282 LIINYLIKEIEDL-------DITQKSFLNYKKRTCGSGVSVIEAPRGSLIHKIKIENEKI 334 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 Y V+PS + + + +L+ + + FD C C H Sbjct: 335 KFYDIVMPSQFYLS-NGTKEKPSASQMALIREEIKFIDT------IFKCFDICAVCVTH 386 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 198 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 98/554 (17%), Positives = 172/554 (31%), Gaps = 166/554 (29%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIEN-GVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 M + + I+P TR EGH ++ ++++ G+V K + S T RG E+ + + A + V Sbjct: 1 MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVS 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R CG+C HA S+V A E A I P + +R Sbjct: 61 RFCGICPIAHATSAVEAIEDACGIVPPKDGLLLRE----------------------LTG 98 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + + P + +F +++++ + Q Sbjct: 99 LGNKMHSHPLHEFLIA-----------PDFIPEKDRVEYITRIQQ--------------- 132 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 ++ +V +GG+ H N+ VGG+ I + + Sbjct: 133 ------------------MRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIY-Y 173 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + + + +++ +++ T V PE L Y TDS G+ Sbjct: 174 KCKEFEKLAKEQVEYLIPIFENRTLVDGTEIPEKLG-------YHDFGYLATDSTYGN-- 224 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 +E+ + + P +E Sbjct: 225 -----------------------------RENIEQKKVHEYTPYDVYEKEVAVQACQLFQ 255 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + + G+ +EVGP A K ++ Sbjct: 256 E----------YNGRLMEVGPRARFA------------KFHDFKEK-------------- 279 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + I R L D T K I GE G+G EA Sbjct: 280 -GAMAIHIARAYENVIHVKRAMEIIEEL-----NVDGLTRAKDPILGDGEKLGLGVHEAA 333 Query: 479 RGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG +H I + G I+ Y A+V +TWN L+G V K Sbjct: 334 RGHNTHQASIDEKGRITYYNAIVATTWNIP--------------LIGKAVEAHYKF--AE 377 Query: 538 RTIHSFDPCMACAV 551 + ++DPC++CA Sbjct: 378 HVVRAYDPCVSCAT 391 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 197 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 89/539 (16%), Positives = 158/539 (29%), Gaps = 163/539 (30%) Query: 14 EGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 EG + E + + + G+EE +KN++ DA +I R+CG+C +H ++V Sbjct: 12 EGEATLKIEGDK-KIDFVQIEFWQYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHATV 70 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 + E + AQ R + +HI FY + L +S++ Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKI 130 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 K ++ G + H + +P V Sbjct: 131 SKAIA----------------------------ILAGQFPHNSYMVPGGV---------- 152 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDF 253 + L + +I ++ D Sbjct: 153 ------------------------------TCDPTYMEIMRLKDLIKEIKEEYIKEIMD- 181 Query: 254 VEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYR 313 E + D P+ GK +L + E NG Sbjct: 182 -ENLTSHDLERFFENLPK--DIGKSLNKFLVLGESNIFKSNG------------------ 220 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGK 373 K ++E S K+ + + Sbjct: 221 ---------DYKNVKEERNKSL-----------------------------SKNALYNNE 242 Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 EVGPLA M++ + + ++ S R+ R Sbjct: 243 YYEVGPLARMIINKNKNIKKIYDIYSD-------------------SIYTRMCARIYEPL 283 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGII 493 L D ++ + S + +F+KPN+ K + +EAPRG L H + IK+ I Sbjct: 284 LLLDYIEQKLSEV-----DLCEPSFLKPNVR---NGKAIVAVEAPRGSLIHEISIKNEKI 335 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 Y VVP+ +N + ++ P + +L+ +A + FD C C H Sbjct: 336 DYYNIVVPTQFNLA-SSTKENPSPAQAALMNEDIAYVDS------VFRCFDICAVCMSH 387 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 100/572 (17%), Positives = 176/572 (30%), Gaps = 168/572 (29%) Query: 1 MSQRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQ 58 ++ RI I P TR EGH ++ E+ E G+V+KA+ T RG E ++K + A + V Sbjct: 6 VTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVM 65 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C TTH ++S A E+A++ +VP + +R ++ + Sbjct: 66 RICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNR------------------ 107 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + + + E K+ +++ + + G HP Sbjct: 108 ---LHSHPLHHLLTIDDFLKPDETDLKIELIKLIQRMRKV--GQLVVDIVGGEGIHP--- 159 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 N+ +GG+ I L Sbjct: 160 -------------------------------------PNIVIGGMRTNITERAKSRLY-- 180 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + + Y+ D + Y E + YL P G+ Sbjct: 181 --------------YALRQYEKDAYELYEKYTELIE------RYLEEIGIPDL---GAHE 217 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 +P + + E +Y DE + Sbjct: 218 YP--------YIATHTTYGDRYAINWDDVTEIPAQRYYDDE------------------E 251 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + + ++ P + G E GP A M+ + Sbjct: 252 AKQTTTIQIPLYAGVPAEGGPRARMV--------------------------KFGNFREG 285 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 S + I R L N + + G+G EAP Sbjct: 286 GSAMDINIARAQENLGAVYRALEILDELDLNGKTRAEVEY--------KDGFGIGVHEAP 337 Query: 479 RGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 R +H + KDG I +Y+ + STWN E+++ G P Sbjct: 338 RATNTHMAEVGKDGKIKSYRIIAASTWNF---------PIVEKAIEGYPQQ------YAE 382 Query: 538 RTIHSFDPCMACAVHVV--DADGNEVVSVKVL 567 + ++D C +CA HV+ D + E++ V+ + Sbjct: 383 VIMRAYDICASCATHVIVKDEETKEIIEVRKM 414 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 113/568 (19%), Positives = 193/568 (33%), Gaps = 172/568 (30%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKA--WASGTMWRGMEEIVKNRDPRDAWMIVQ 58 MS+RI I P +R EGH + E+++ + + S T RG+E+IV + P A +IVQ Sbjct: 1 MSERIVISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQ 60 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICGVC H L+S E+ Sbjct: 61 RICGVCPIPHTLAS---VEAI--------------------------------------- 78 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 +L + KA +L+ ++ + V S + F P Sbjct: 79 -DDSLDIEVPKAGRLLRELTLAAHH---------------VNSHAIHHFLIAPDFVPENL 122 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + +N ++ E +++A VV ++ G+ H ++ +GG+A+ I L Sbjct: 123 MADAINSVS--------EIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLY-A 173 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 RL +K +D+ + +I + L +G G Sbjct: 174 RLKQLKPKVDEHVE----------LMIGLIEDKGLPKGLG-------------------- 203 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 + N + I ++ + E SWY D + Sbjct: 204 -----VHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDD------------------PE 240 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 K + P + G+ VEVGP A M+ E ++ Sbjct: 241 IAKRACSTIPLYDGRNVEVGPRARMV---------------EFQGFKER----------- 274 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK-GVGFLEA 477 + + + R + L D + V+ + G K GVG +E Sbjct: 275 -GVVAQHVARALEMKTALARAIEILDEL-------DTSAPVRADFDERGTGKLGVGAIEG 326 Query: 478 PRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 PRG+ H +++G I Y A+VP+TWN +GP + Sbjct: 327 PRGLDVHMAQVENGKIQFYSALVPTTWNIP------TMGPATEGFHHEYGP--------- 371 Query: 538 RTIHSFDPCMACAVHVVDADGNEVVSVK 565 I ++DPC++CA HV+ D + ++ Sbjct: 372 HVIRAYDPCLSCATHVMVVDDEDRSVIR 399 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 14/230 (6%) Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 + W G + D W G L ++ A + + Sbjct: 48 STGTMWRGLEVILKGRDPRDA---WAFVERICGVCTGTHALTSIRAVENALGIAIPDNA- 103 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV 459 L L STLGR R + + LQ + L+ N+ GD T Sbjct: 104 -------NCIRKKLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATAN 156 Query: 460 KPNIPA---TGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVG 516 KGVGF EAPRG L HW+ I++ I +YQ VVP+TWN+GPR+ +G Sbjct: 157 VTLWEPDTWPTSAKGVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIG 216 Query: 517 PYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 YE +L+GT +A P++PLE++RT+HSFDPC+AC+ HV+D G E+V V+V Sbjct: 217 AYEAALMGTKLAVPDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQV 266 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 56/92 (60%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Query: 2 SQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 +RI +DPVTRIEGH+R + I+ N V++ A ++GTMWRG+E I+K RDPRDAW V+RI Sbjct: 16 GRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERI 75 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIR 92 CGVCT THAL+S+RA E+AL I +P NA IR Sbjct: 76 CGVCTGTHALTSIRAVENALGIAIPDNANCIR 107 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 73/177 (41%), Positives = 101/177 (57%), Gaps = 4/177 (2%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M++ I IDP+TRIEGHLR++ E++NGVV+ AW SG +RGME +V++R P DA IVQRI Sbjct: 1 MARSI-IDPITRIEGHLRVEMEVDNGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRI 59 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CGVC +HA S AAE A +I + NA+ IRNII A H HI+ FY L+ D+V+ Sbjct: 60 CGVCPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPL 119 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 +AL A+ A ++ VS+ + T + K+ G Sbjct: 120 NALNANIATAYDL---VSSAGTGCQTDLTALAQKLTSSPTMGSFQSLVVXVPRSSGC 173 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 80/558 (14%), Positives = 149/558 (26%), Gaps = 137/558 (24%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ + +D + R+EG + +I + V + R E ++ R +A I Sbjct: 3 TKTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITS-- 60 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 I I + D + + Sbjct: 61 -----------------RICGICP---------IAYMMSAVQ---------AMEDILGVA 85 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A + + + S L IF Sbjct: 86 VAGGMRDLRRLLYCG---------------------EWIESHALHIFMLHAPDFLGYDSV 124 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 + + L ++ N++++L+GG+ H N+ VGG + L L + Sbjct: 125 IAMAGDYPDLVQRGLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLE 184 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 + + + +V D F P++ EF + Sbjct: 185 WAV-AAAAETVRWVAAFPFPD------FAPDY--------------EFVALHHGEEYPMN 223 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G ++ PI D I+E + P Sbjct: 224 QG-RLVSNKGLDIPIHQFYD-----QIEEQHR------------------PHSTALQAQL 259 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 K +GPLA + TQ + + Sbjct: 260 K---------ERGNYFLGPLARFNLNFEQLTPRTQAVAQ-----------SVGMTPLCRN 299 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 II R++ + + I + V + A G G EAPRG Sbjct: 300 PFKSIIARSLEVMFAAEEALRLIDSYI-----PPAQSVVDYTVRA---GCGHGCTEAPRG 351 Query: 481 MLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 L H+ I G I Q P+ N D+ + + + P + + + Sbjct: 352 SLYHYYQIDQQGDILAAQIAPPTAQNQS--TIEQDLWQFVEEHIDLP--ENQLRSQCEQV 407 Query: 540 IHSFDPCMACAVHVVDAD 557 I ++DPC++C+ H + + Sbjct: 408 IRNYDPCISCSTHFLKLE 425 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 85/553 (15%), Positives = 165/553 (29%), Gaps = 144/553 (26%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 I +D TR+EG + + IENG V A R E + R D + R + Sbjct: 6 IELDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEAR---I 62 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C A+ + +R I +AL Sbjct: 63 C----AICYA-----------SHSIASVRAI-------------------------ENAL 82 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + +++ E L+ ++ W +++ S L ++ + Sbjct: 83 GIEVSESVEKLRELALWG---------------EIIESHALHLYLLALPDVYGYPDAISM 127 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + L + N + + G+ H N+ GG + L Sbjct: 128 VSKYGELIKEGLTIKALGNMIRETIAGREIHGINVKPGGFGRYPSEREL----------- 176 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 IA + + VN + E P G Sbjct: 177 -------------------EKIAKHARALVRFARRIVNIFATQE------------PRGA 205 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 + + + IQ + +P YS Sbjct: 206 KIEVPMVTSEYLWGDELIAGNDRIQ---------------YEDIEEVPVP--------YS 242 Query: 364 WVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLG 423 + K + GK + VG LA +L+K + + L+ + + Sbjct: 243 FAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLDSYKEKIKS-----------GHVIY 291 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 + + + ++ LI+ + P+ +G+G++EAPRG+L Sbjct: 292 NNLAQAIELVYALEVASKIAEELISEGIEKSTCE------PSEKSGEGIGYVEAPRGVLV 345 Query: 484 HWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 H I++ I + P+ +N G + +++ G ++ ++ + +F Sbjct: 346 HHYRIENERIVWSNTITPTAFNQGMMEKSLLEDA--RNMFG-KESETTLKSKLEEVVRAF 402 Query: 544 DPCMACAVHVVDA 556 DPC++C+VHVV Sbjct: 403 DPCISCSVHVVRL 415 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 116/263 (44%), Gaps = 24/263 (9%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRI 60 + +I ++ +TR+EGH I +++ G + K R E +++ R +A I RI Sbjct: 5 TVKIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHITSRI 64 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C+ H+L+S++AAE AL + +R ++L H++H Y L+A D + + Sbjct: 65 CGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVP 124 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 S + T + + + + K+ N + D++ + + G + P Sbjct: 125 SFVPLVKTHNAVVRRAL---------RMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRP 175 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHI----QNLAVGGVAN----PINLDGL 232 +++ + L+ LE RD L + VG V++ P+ + + Sbjct: 176 KDLDAM-----LEMLESMRDDMAETLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDV 230 Query: 233 GVLNLERLMYIKSFIDKLSDFVE 255 G + +RL K + ++F++ Sbjct: 231 GSTDGKRLGK-KDYRQATNEFID 252 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 119/405 (29%), Gaps = 73/405 (18%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + + S L ++ + + A +AL ++ N V +L G+ H Sbjct: 103 EFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHNAVVRRALRMKKLCNDVCDILVGRHVHPI 162 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 + VGG L L ++S D +++ + +P++ Sbjct: 163 SAIVGGFTKLPRPKDL----DAMLEMLESMRDDMAETLA-------LAKTLQFPDFYRET 211 Query: 277 KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 + E+P + G + L + ++ + Sbjct: 212 EYVGLVSDDEEYPLLMGD------VGSTDGKRLGKKDYRQATNEFIDPR----------- 254 Query: 337 KDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 S K + + VG LA + + + Sbjct: 255 --------------------------SSAKFAKWSRDSYLVGALARFNLNSDKLHPTAKA 288 Query: 397 KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHT 456 E+ H+ + + V + + L N D Sbjct: 289 IAEELGLK-----------PICHNPYLNTVAQVVEIVHCYEHAIDLIKDLKKNGINYDEE 337 Query: 457 TFV---KPNIPATGEFKGVGFLEAPRGMLSH-WMVIKDGIISNYQAVVPSTWNSGPRNFN 512 V + GVG +E PRG+L H ++ +GII ++P+ N Sbjct: 338 IVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTDSNGIIEQANCIIPTNQNIANIE-Y 396 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDAD 557 D + + L T L++ + ++DPC++C+ H ++ Sbjct: 397 DMMKLLPEILDQTK---EEITLKMEMLVRAYDPCISCSAHYLNVK 438 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 97/558 (17%), Positives = 164/558 (29%), Gaps = 135/558 (24%) Query: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + ITID + R+EGH I + E G+ S + R E ++K + RDA IV R+ Sbjct: 2 ETITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRV- 60 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 C+ I A HT Sbjct: 61 --CS----------------------------ICSAGHTLAS------------------ 72 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 + + ++ + F + N + + S L +FA + Sbjct: 73 --------VMALESALGIHVSDTVQGFRTLLN-LGQFIESHALHLFALAAPDYLGNASIL 123 Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 ++ + LE +R N V ++GG+ H N+ VGG+ + L L+ L Sbjct: 124 QMASHFPEQVQKGLEIKRVGNLVQEVVGGRAIHPVNVIVGGLGRRPARQAMQTL-LQDLQ 182 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPG 301 L FV + + + G G+ L Sbjct: 183 NALDLALSLRGFVASLQNPEMGLQPPILVALRASGARYG------------LTGTHLAAS 230 Query: 302 GYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGK 361 G P+ K + + Sbjct: 231 G-------HEDIPVAHFYQRVNEKVV---------------------------------R 250 Query: 362 YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST 421 +S K T+ K VG LA M+ ++ +T Sbjct: 251 HSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALL-------------PAQPTT 297 Query: 422 LGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM 481 L + V + AL + +G + GE G+ LE PRG Sbjct: 298 LHNNAAQFVELVWALEEAV----ALCEALQEGPALIPPMTTMGFEGEQMGLAALEVPRGT 353 Query: 482 LSHWMVIK-DGIISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 L H + +G+++ + P+ N R+F VG + L L + Sbjct: 354 LYHLYGVNGEGVLTQADIITPTAQNLAHVERDFAHGVGYW---LEQPQRQQEQLRLYLEM 410 Query: 539 TIHSFDPCMACAVHVVDA 556 ++DPC++C+ H+VD Sbjct: 411 IARAYDPCISCSTHLVDL 428 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 17/226 (7%) Query: 139 TWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQ 198 W + T+++++++ V G+LGIF NGYWG+ KL P NL+A+ HY QALE Q Sbjct: 28 LWTRSMHNTSTEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQ 87 Query: 199 RDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVY 258 RD +++ + GGK PH Q+L VGGV + I++ + K ++ F++ Y Sbjct: 88 RDLGQMMTIFGGKDPHPQSLVVGGVTSIIDIKD-----PAKRQLFKGLALRVRAFIKGAY 142 Query: 259 KVDTAVIAAFYPEWL--TRGKGAVNYLSVPEFPT---DSKNGSFLFPGGYIENADLSSYR 313 +++ Y + G G ++L FP D LFPGG + N DL+ Sbjct: 143 MPGMYMLSEMYKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDLTKV- 201 Query: 314 PITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDD 359 ++ + E H+WY AP+ P++GTT P S Sbjct: 202 ------TDFDPALVTEDVTHAWYAAPAPEHPYDGTTTPTIQTLSQK 241 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 11/207 (5%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQRIC 61 + +T+ +TR+EG + + +GVV + R E ++ R + I R+C Sbjct: 6 RTLTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDITARVC 65 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C + +S+ A E A + + +R ++ H H +H Y L A D++ Sbjct: 66 GICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPD 125 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 A+ + +G++ K N++ + + + G ++ Sbjct: 126 AISFAKDHREFLERGLA---------LKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRD 176 Query: 182 EVNLIAVAHYLQALECQRDANRVVALL 208 E+ +A +AL+ R VA Sbjct: 177 ELGPLA-EELRRALDDALFTLRSVAEF 202 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 64/399 (16%), Positives = 112/399 (28%), Gaps = 79/399 (19%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + + S L I+ + L ++ NR++ +GG+ H Sbjct: 103 EWIHSHALHIYLLHAPDFLGYPDAISFAKDHREFLERGLALKKAGNRLMEQIGGRAIHPI 162 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 N+ +GG + D LG L ++ +D + V + D + + Sbjct: 163 NVRLGGFYSVPRRDELGPLA----EELRRALDDALFTLRSVAEFDFPDVEFDH------- 211 Query: 277 KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 EF ++ + G I + S + + E Sbjct: 212 ----------EFLALTQPDRYAIEDGAI----------VRSAGPAFPVADFSEHV----- 246 Query: 337 KDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 +P +S T G+ GPLA + AA + + Sbjct: 247 ---------REMQVP----------HSTALHATLDGERYLTGPLARYSLSSAALSPTAR- 286 Query: 397 KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHT 456 + AQ + I+ R V + Sbjct: 287 ----------QAAAQAGLGAQCRNPFRSIVVRAVEVVYAIEEALRIIEDY--------ER 328 Query: 457 TFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDV 515 G G EAPRG+L H I DG++S V P+ N + Sbjct: 329 PARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVSAATMVPPTAQNQAAIEYEMGR 388 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 + D R+I + DPC++C+ H + Sbjct: 389 LVAG----NLTLDDAELTSLCERSIRNHDPCISCSAHFL 423 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 11/209 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQRI 60 + R+T+ + R+EG R+ + +G V A + R E ++ RD R+ I RI Sbjct: 9 TTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPPDITSRI 68 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S+ A E A + +R ++ H +H Y L A D++ + Sbjct: 69 CGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGAS 128 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 A++ ++ +G++ K N I D++ + G P Sbjct: 129 DAIELARIARPDVERGLT---------LKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTP 179 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLG 209 E+ +A AL+ + V+ Sbjct: 180 SELAPLA-EQLRWALDDALATVQWVSHFE 207 Score = 145 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 64/401 (15%), Positives = 114/401 (28%), Gaps = 79/401 (19%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + +AS L I+ E+ IA + L ++ N ++ ++GG++ H Sbjct: 107 EWIASHTLHIYLLHAPDFLGASDAIELARIARPDVERGLTLKKAGNAILDMIGGRSIHPV 166 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 N+ +GG L L + + + + +V D V Sbjct: 167 NVRLGGFYRTPTPSELAPLAEQLRWALDDALATVQ-WVSHFEIPDAEVDT---------- 215 Query: 277 KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 E ++ G + IE+ L++ + +E+ + H Sbjct: 216 ----------ELLALAQPGRY-----AIEDGVLTTTSGSSFAPEEFCDHVAERQVPH--- 257 Query: 337 KDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 S G+ GPLA + A E+ + Sbjct: 258 --------------------------STALHAHLDGQAYLTGPLARYSLHSADLSETARQ 291 Query: 397 KLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHT 456 E + I+ R V D Sbjct: 292 AATEAG-----------LGTVCRNPFQSIVVRAVETVFAVDEALRLIREYY--------R 332 Query: 457 TFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDV 515 + G G EAPRG+L H + +G I + P++ N + Sbjct: 333 PESPYVDMSPRAATGYGVSEAPRGVLYHLYQLDSEGRILRATIIPPTSQNQAAIENDLRN 392 Query: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 + D RTI ++DPC++CA H +D Sbjct: 393 TLAA----NLTLTDAELTELCERTIRNYDPCISCATHFLDV 429 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 84/561 (14%), Positives = 160/561 (28%), Gaps = 138/561 (24%) Query: 1 MSQR--ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIV 57 MS+ I + + R+EG +D I++G + K R E+ ++ R+P Sbjct: 1 MSRETVIEVPILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIID-- 58 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 A I Sbjct: 59 -----------------AVARICGI----------------------------------- 66 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 A QA ++A + ++ + + S L + Sbjct: 67 -CPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLG---EWIESHYLHVHLLAAPDFLGY 122 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 + E+ ++ ++ Q N ++ LLGG++ H + VGG + + L Sbjct: 123 RSAIEMAKDYPKEVVRGVKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHALIP 182 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 +K + + D VE V LS P+ K S Sbjct: 183 ----KLKDALKEAKDVVEWVST-----------------------LSFPDTTIPFKMVSL 215 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWS 357 P Y D ITS +++ I E H + P Sbjct: 216 SHPTEYPVFGD----DVITSDGEKFH---ISEYDDH-----------FREFHAPQSTALH 257 Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 T G+ + +GPL + + +++ Q++ T Sbjct: 258 ST---------TVDGQPILLGPLPRINLN-----------FDKLPKHIQEMAHATGVKWP 297 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEA 477 + ++ R + + T V + A G +EA Sbjct: 298 SKNMFHSVVARAIEGYWAIERALQVCENY-----SYTDTPCVDYTVKA---ADAWGAVEA 349 Query: 478 PRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEV 536 PRG+ + + D G+ + P++ N + + E G + + L Sbjct: 350 PRGIQIDHIKVNDQGLAEKIRISAPTSQNLPCIEADLRI-ALEN--FGLDKPEDDIRLHA 406 Query: 537 VRTIHSFDPCMACAVHVVDAD 557 I ++DPC++C+ H + + Sbjct: 407 EMVIRNYDPCISCSAHFLTLN 427 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 7/216 (3%) Query: 4 RITIDPVTRI-EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRI 60 ++ I PV + + + ++ V + + RG+E++ ++R I +RI Sbjct: 180 QVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERI 239 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALDWV 117 CG+C H+ + +A E AL I+VP A YIR ++L H H+++ L+ DW Sbjct: 240 CGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW- 298 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 + +A V+ I + A L I + A+ Sbjct: 299 GFMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAV 358 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTP 213 V+ RD R V+++G Sbjct: 359 LDAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVAR 394 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 124/453 (27%), Gaps = 47/453 (10%) Query: 115 DWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGH 174 DW + L+ + T E + V + + Sbjct: 142 DWPEGVHPLRKEFTYTERPPSVARKCEFRPSVEGEGIMQVPIGPVHAVADEPGQFRVFLD 201 Query: 175 PAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV 234 + + + V ++ L R V + + I A LG+ Sbjct: 202 GEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICGYAHSCAYCQAVEQALGI 261 Query: 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN 294 ER +YI++ + ++ + + A + G +++ + Sbjct: 262 EVPERALYIRTLMLEVERLHSHLLNLGLAC----HLAGFDWG-----FMAFFKAREKVMY 312 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYD 354 + L GG ++ + E K E K + +A +T Sbjct: 313 MAELLTGGRKTYG-MNVVGGVRRDITEDRAKKALEILKEVEKEYKAVLDAV-LSTSTLVS 370 Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 D G + K VGP+A R+ V + Sbjct: 371 RAKDVGVLPRDVA----RKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVPVHSEG-- 424 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 L R+ R E I++ + + + + +G+G+ Sbjct: 425 -----DVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPY-------ARGLGY 472 Query: 475 LEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 +EAPRG H+++ + ++ + N G +AD Sbjct: 473 VEAPRGEDVHFVITGPHSKVYRWRVRASTYNNW---------PAIPYMCRGYTLAD---- 519 Query: 534 LEVVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 + I S DPC +C V VVD Sbjct: 520 --LPLIIGSIDPCYSCTERVIVVDVKSGRTRVF 550 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 160/559 (28%), Gaps = 147/559 (26%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 MS+ + IDP+TR+EG R+ E V E PR Sbjct: 1 MSE-VRIDPLTRVEGLGRLSVLTEGEEVKDVRLEI-----FE------PPRFF------- 41 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 E L P D V Sbjct: 42 ----------------ERLLKGKKPDQVI-------------------------DTVARI 60 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIK--DLVASGQLGIFANGYWGHPAMK 178 L + + + S + L P +++ I + V+S IF + Sbjct: 61 CGLCPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERE 120 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 E+ L+ ++ N ++ LLGG+ H N+ VGG + + Sbjct: 121 SFLELMREKRELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIE----N 176 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 L I+S + +E D YPE ++S+ Sbjct: 177 TLAEIESALPFAEKALELFLNFD-------YPEMEKERI----FVSLGNHEVYP------ 219 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 I S + +EY ++ HS Sbjct: 220 -----ITEGSAVSSEGMNIEKNEYEEYFVEYQLPHS------------------------ 250 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 YS +K GK EVG LA + + + K+ V Sbjct: 251 TALYSRLK----DGKAYEVGALARIYNNFGKLPQDLREKVE--------------GVLPA 292 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + II R V ++ +++ E +GVG EAP Sbjct: 293 RNPFKSIIARIVEVIYALREAKHILEKFEGGEPHVEYSIR---------EGEGVGITEAP 343 Query: 479 RGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG+L H + G + V P++ N + +G + + + + Sbjct: 344 RGILYHRYRVNSKGEVVFANIVPPTSQNQRAMEEDVLLGL-------KTLKNGDIRVLAE 396 Query: 538 RTIHSFDPCMACAVHVVDA 556 + + +FDPC++CA H ++ Sbjct: 397 KLVRNFDPCISCASHFLEV 415 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 113/405 (27%), Gaps = 62/405 (15%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + + S L I+ ++ AH + L ++ N VV LLGG+ H Sbjct: 106 EWIESQTLHIYLLHAPDFLGHDDVIGMSRSEPAHVRRGLRLKQTGNAVVELLGGRAVHPV 165 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 ++ +GG L L ++ +D D V+ V D Sbjct: 166 SVRLGGFHRTPTRTELRPLAEG----LRVALDDAWDTVQWVAGFDFPEAECEA------- 214 Query: 277 KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 + ++ G++ G + P S + E+ Sbjct: 215 ----------DLLALAEPGTYAIESGVPTVVPYDATHPAWSFPLRTFCDHVTET------ 258 Query: 337 KDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQN 396 +S G+ G LA V + Sbjct: 259 ----------------------QVPHSTALHSRLDGRRHLTGSLARYAVSGHLLSPTALE 296 Query: 397 KLNEIV---AIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG 453 ++ T + + I+ R V + + Sbjct: 297 AAASAGLDDPPLREGRDGTGQGTVCRNPFRSILVRAVEVFYAVEEALRIITEY------- 349 Query: 454 DHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFN 512 G G EAPRG+L H +G +++ + + P+ N G + Sbjct: 350 -ERPASPYVPVPARSGVGHGATEAPRGLLYHRYAFDREGRVTDARIIPPTAQNQGAIEED 408 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDAD 557 + +L ++ R I + DPC++C+ H +D + Sbjct: 409 LRRS-VQAALDRGQDSEAELTRLCERVIRNHDPCISCSAHFLDLN 452 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 10/187 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRI 60 S+ +++ +TR+EG + I + V++A S R E +++ R + + RI Sbjct: 8 SRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTSRI 67 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + LS+ RA E A +DV +R ++ +H Y L A D++ Sbjct: 68 CGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLGHD 127 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + ++ + + +G+ + N + +L+ + + G Sbjct: 128 DVIGMSRSEPAHVRRGL---------RLKQTGNAVVELLGGRAVHPVSVRLGGFHRTPTR 178 Query: 181 PEVNLIA 187 E+ +A Sbjct: 179 TELRPLA 185 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 73/553 (13%), Positives = 136/553 (24%), Gaps = 139/553 (25%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 + + R+EG +D E+ +G + R E+ ++ R+ ++ +V R +C Sbjct: 11 VPVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVAR---ICG 67 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQA 125 + + A Sbjct: 68 I--------------------------------------------------CPVAYQMSA 77 Query: 126 DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNL 185 + W F + + S L I E+ Sbjct: 78 VHAIEGIFGQAPGPWVRAMRRVF-----YCGEWIQSHSLHIHLLAAPDFLGYSSASEMAR 132 Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 + L Q N ++ GG++ H VGG + VL +++ Sbjct: 133 AHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVL----REQVRA 188 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIE 305 + V L++P+ P D + + P Y Sbjct: 189 ALPGAEALVAWTAA-----------------------LNLPDDPQDFVSVALRHPDEYPM 225 Query: 306 N-ADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSW 364 N + S + +Y + P +S Sbjct: 226 NEGRIVSSDGLDIPIADYESH-------------------FREHQEP----------HST 256 Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGR 424 G+ VGPLA + + L + L + + Sbjct: 257 ALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAF-----------PSRNMFHS 305 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 I+ R G G EAPRG+L H Sbjct: 306 IVARAAEIHYALLETSRLLEDY--------TEPEAPFVPAVPRVGIGYGCTEAPRGLLWH 357 Query: 485 WMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSF 543 + G + + + V P++ N + +G + I ++ Sbjct: 358 RYDLDAAGQVLHARIVPPTSQNQARMEADLRHSL---ETLGLDRDGETLRQQAEMVIRNY 414 Query: 544 DPCMACAVHVVDA 556 DPC++CA H + Sbjct: 415 DPCISCATHFLKV 427 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 73/557 (13%), Positives = 144/557 (25%), Gaps = 139/557 (24%) Query: 1 MSQR-ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQ 58 M+ R I +D ++R+EG +D + NG + + R + + Sbjct: 1 MTNRSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLV------------ 48 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 + R + Sbjct: 49 -----------------------------GRKYRELPDITARIC---------------- 63 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + T + + K+ + + S L +F + Sbjct: 64 GICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLF-ALSQFIQSHVLHVFMLAAPDFLGYE 122 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + AL+ +R N + AL+GG+ H VGG ++ + Sbjct: 123 SVISMAEDFPDEVKLALDLKRLGNDITALIGGREVHPVTPRVGGFSDLPS---------- 172 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + + + ++ +E + A LSVP+ D + + Sbjct: 173 -----QEALKQAAERLEAALEGGMAAAKLVGG------------LSVPDMSWDFTSVALS 215 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 Y N R ++ + + +E + Sbjct: 216 DKKEYAVNG----GRLVSDNGLDIDPADYREFLHEAHVSPSHALH--------------- 256 Query: 359 DGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQL 418 + G + VGPLA + + + + Sbjct: 257 ---------SSLSGNSFLVGPLARVNLNFDRLSGKAKEAAALTGVSF-----------PS 296 Query: 419 HSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAP 478 + + R + AL + + N G EAP Sbjct: 297 KNPFHSVDARVAELVHSIEESLEIIDALGKPVP--------EKNGYIVRPGCGAAITEAP 348 Query: 479 RGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVV 537 RG+LSH + G++ V P++ N E ++D L+ Sbjct: 349 RGILSHSYCFNELGVVEEADIVAPTSRNVKNMEEGLRRFIPE----HLDLSDEELTLKCE 404 Query: 538 RTIHSFDPCMACAVHVV 554 I ++DPC +C+VH + Sbjct: 405 MYIRNYDPCFSCSVHFL 421 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 67/551 (12%), Positives = 152/551 (27%), Gaps = 134/551 (24%) Query: 5 ITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D + R+EG ++ + ++GV R E I + +A + RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRIC-- 65 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 S AA ++ Sbjct: 66 -------SFCSAAHKLTAVEA--------------------------------------- 79 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + + + + I D++ S L ++ + P ++ Sbjct: 80 ----------AEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPLKM 129 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 AL+ + + ++ LG + H +N+ +GG + L + +RL Sbjct: 130 LDKYKKEINIALDLKNLGSWMMDELGARAIHQENVVMGGFGKLPDKTTLEKM-KKRLQEA 188 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGY 303 + + ++ + + + RG Y Sbjct: 189 LPLAEYTFELFSKLEQYEEVEGPIIHMAVRPRGDVYGIYGD------------------- 229 Query: 304 IENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYS 363 +S S+ Y ++ +H S Sbjct: 230 ----AISVSDGFEFPSEGYKKHMVERVVEH-----------------------------S 256 Query: 364 WVKSPTFYG-KTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 + K + G K G ++ ++ + + + + Sbjct: 257 FAKHSFYNGEKPFMTGAISRVVNHADKLYGRAKELYESHKDLLRPT-----------NPF 305 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML 482 + + + + + + + + GV EAPRG+L Sbjct: 306 ANNLAQALELVYFMERGIDLIDEALAKWP------IRPRDEVDVKDGFGVSTTEAPRGIL 359 Query: 483 SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 + + +KDG ++ + P+ +N + + + L + + Sbjct: 360 VYALEVKDGRVAYADIITPTAFNLAMMEVHVRM----MAEKHYNDDPERLKLLAEMVVRA 415 Query: 543 FDPCMACAVHV 553 +DPC++C+VHV Sbjct: 416 YDPCISCSVHV 426 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 92/552 (16%), Positives = 167/552 (30%), Gaps = 139/552 (25%) Query: 3 QRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 +RI I+ +T+IEGH + EIE+ + + + +A+M+ Sbjct: 4 RRIRIEEITKIEGHANLTIEIEDENLK--RVIFGVH-------EGSRYFEAFMV------ 48 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 ++ +P A I I AH Sbjct: 49 --GKSYKY-------------LPELAGRICGICTVAHEIAS------------------- 74 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + + E+ K+ I + S L ++ + ++ E Sbjct: 75 -------VRAVEDALGIEISEEVEDLRKLM-LISSHIQSHILHLYFLALPDYRNVESIIE 126 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 + V +A E + +N + L+GG+ + G V+ I + Sbjct: 127 LANKNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKET----------- 175 Query: 243 IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGG 302 I+ +I K+ + + ++ YP++ E+ S G Sbjct: 176 IERYIKKMKEIYPFLLDTAELFLSLEYPKYERES----------EYVALWDGHSIPLYKG 225 Query: 303 YIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKY 362 I + S + QE + +Y Sbjct: 226 -----------EIATLSSIFDPHQYQEHIR------------------------EWVVEY 250 Query: 363 SWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTL 422 S K G+ VG LA + + RE + Sbjct: 251 SSAKHSLIEGRDYMVGALARLNINRN-LREEARELAERYG-------------------- 289 Query: 423 GRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI-PATGEFKGVGFLEAPRGM 481 R + L L+N + AL + + I +GVG +EAPRG+ Sbjct: 290 VRFPSNRIAWINLAQALENVHFALEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGL 349 Query: 482 LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIH 541 L H IK+G + + P+ N+ N + Y +V D +E + I Sbjct: 350 LIHHYKIKNGKCTYVNIITPTAMNT--ENIERILKGYISQIV--SKNDEYIKMEAEKIIR 405 Query: 542 SFDPCMACAVHV 553 ++DPC++C+VHV Sbjct: 406 AYDPCISCSVHV 417 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 11/208 (5%) Query: 2 SQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ I P+TR+EG R+ +I +G V +A R E ++ R + I RI Sbjct: 4 TRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITARI 63 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 CG+C + +S++ A E ++ V +R +I H +H + L D++ Sbjct: 64 CGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYD 123 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 SAL + + + G++ K N + ++ + G Sbjct: 124 SALHLAQDQPALVKLGLT---------LKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRR 174 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALL 208 ++ V QA + RD R A L Sbjct: 175 RDLT-ELVGQLEQARDIARDTARFTAAL 201 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/403 (17%), Positives = 124/403 (30%), Gaps = 86/403 (21%) Query: 157 DLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQ 216 + + S L +F + A L ++ N ++ ++GG+ H Sbjct: 102 EWIESHALHVFLLHLPDFLGYDSALHLAQDQPALVKLGLTLKKAGNTLMTVIGGRAIHPV 161 Query: 217 NLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG 276 N VGG D + + Sbjct: 162 NARVGGWYRAPRRR------------------------------DLTELVGQLEQARDIA 191 Query: 277 KGAVNYLSVPEFPTDSKNGSFLF---PGGY-IENADLSSYRPITSHSDEYLIKGIQESAK 332 + + + +FP D + +F+ PG Y +E ++S + +Y +E Sbjct: 192 RDTARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPADYDRHFTEEQVP 251 Query: 333 HSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE 392 S + +S + + G + GPLA + Sbjct: 252 WS------------------------NALHSTLAA----GGSYLTGPLARFALGAERLAP 283 Query: 393 STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGK 452 + + E + E S + R I E I+ + Sbjct: 284 AARETAAE-------IGLRPPERNPYRSIIVRCIEMVHAADEALRIIADYTE-------- 328 Query: 453 GDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNF 511 D + P G G EAPRG+L H I +G I + + V P+ N P Sbjct: 329 PDPSALEAP----PRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIVPPTAQNQRPIEE 384 Query: 512 NDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 + G E+ + +++P L R I ++DPC++CA H + Sbjct: 385 DLR-GVVERFM---NLSEPELALRCERAIRNYDPCISCATHFL 423 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQR 59 MS I I P+TR+EGH + ++ V + R E +++ + R+ I+ R Sbjct: 1 MSNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICR 60 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 IC +C+T H ++++ A E A I V R +I+ H +H + L+ D + Sbjct: 61 ICSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFNA 120 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIF 167 + G+ V N I++ + + Sbjct: 121 AGFADLAKLAPDLLKLGL---------RIKAVGNDIQETIGGRLIHPI 159 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 111/323 (34%), Gaps = 42/323 (13%) Query: 255 EQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSK--NGSFLFPGGYIENADLSSY 312 + D +A+ + E + G + + + +G + PGG+ + Sbjct: 115 DLFGYADAIRMASKHGEVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEEL 174 Query: 313 RPITSHSD----------------EYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 I S + E L +Q + Y +G + Sbjct: 175 EQIESQCEALLRPARRVVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHI 234 Query: 357 SDDGK-YSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + YS+ K + G VG L +++K ++ E Sbjct: 235 EEKTLPYSFAKQSRYKGNIFMVGALPRVMLKHDMLTPMAKHFYEEHKEKLAS-------- 286 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 + + + + + L+ +G++ E +G+G++ Sbjct: 287 ---GYVSFNNLAQAIELLYALEKAKEVAKTLLDKGIEGENVPIEP------QEGEGIGYV 337 Query: 476 EAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 EAPRG+L H I + G I+ + P+ +N G + YE++ +D L Sbjct: 338 EAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIME----LSLYEEARKRYGSSDETTFL 393 Query: 535 E-VVRTIHSFDPCMACAVHVVDA 556 + + T+ +FDPC++C+VH+V Sbjct: 394 QKLEETVRAFDPCISCSVHIVRL 416 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 91/280 (32%), Gaps = 21/280 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 I I+ TR+EG+ + IENG V R E + R D + RIC + Sbjct: 4 IEIEAFTRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAI 63 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H+++SV E AL ++VP +R + L H +H Y L A D A+ Sbjct: 64 CYLSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAI 123 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 + + +G++ N I++L+ ++ G E+ Sbjct: 124 RMASKHGEVVKEGIT---------IKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEEL 174 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 I Q R A RVV + + P + N + Sbjct: 175 EQIES----QCEALLRPARRVVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDY 230 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYL 283 I++ + + Y + + Sbjct: 231 LEHIEE-------KTLPYSFAKQSRYKGNIFMVGALPRVM 263 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 10/173 (5%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTM-WRGMEEIVKNRDPRDAWMIVQRICGV 63 ++I ++R+EG I E+E G V R E + R + I RICG+ Sbjct: 10 LSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPPDITARICGI 69 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C + +SS A E N+ +P N +R ++ H +H + L A ++ S + Sbjct: 70 CPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAPGFLRYPSLM 129 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + +E+ G+ + K N + + ++ G + Sbjct: 130 EMAKDYPTEVGWGL---------QMKKAGNALIRTLGGREIHPVNVRVGGFYS 173 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 26/207 (12%) Query: 352 AYDGWSDDGKYSWVKSPTFYGK---TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 ++ + + + + + + G GPLA + + + Sbjct: 243 QFENFFKEEQTDYSNALRWLGNDSAPCVAGPLARFNLNYYLLPP-----------FLRDI 291 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 T + I+ R V D LI + A+ Sbjct: 292 LKQTTLNYPCLNPFQSILVRLVEVAYAFDEAI----RLIETYEPEGEPCCIDFKPCAS-- 345 Query: 469 FKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPV 527 G G EAPRG+L H + + GII+ + V P+ +N + +D+ + +S Sbjct: 346 -LGQGISEAPRGILYHRYHVDEQGIITGAKIVPPTCFNL--VSAEEDLKAWIES--HPHD 400 Query: 528 ADPNKPLEVVRTIHSFDPCMACAVHVV 554 + N + + + ++DPC++CA H++ Sbjct: 401 SIENLSADCEQIVRNYDPCISCATHLI 427 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 81/440 (18%), Positives = 143/440 (32%), Gaps = 66/440 (15%) Query: 131 SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAH 190 +++ + L EE VQ+ + + + G +P + + + + H Sbjct: 7 NKVCRIAGEAKLVLYEENGTVQDALF-IATAPIRGFEKLVVGKNPLFAVEAVMRICGLCH 65 Query: 191 YLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL---MYIKSFI 247 + + ++ + + A+G V + ++ L + + Sbjct: 66 ASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIEEKREEVL 125 Query: 248 DKLSDFVEQVYKVDTAVIAAF-YPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP-GGYIE 305 +L DF ++ + A +P LT G SVP++ + + L G E Sbjct: 126 FQLMDFHAKISDYLLKMGGAATHPPNLTVGG----MFSVPKWSVFNNLKARLPKLTGQWE 181 Query: 306 N-ADLSSYRPITSHSDEYLIKGIQES---AKHSWYKDEAPQAPWEGTTIPAYDGWSD--D 359 A L + I + + L + E+ +Y D T+P Y+ D Sbjct: 182 EIAHLLTDEDIQTEVADELREKKAENNYLVSSLFYGDRFNINAERIETMPYYEYRKDNPH 241 Query: 360 GKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLH 419 K S + G+ VE GP A M V Sbjct: 242 SKESTTLIAFYGGEKVEAGPRARMKVYREFTD---------------------------S 274 Query: 420 STLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPR 479 S G R L+ ++ K D K + G KGVG EAPR Sbjct: 275 SLYGLHTARVQDTTLALIRLEEILDSI-----KMDEPFRTKNIV--FGPGKGVGVYEAPR 327 Query: 480 GMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVR 538 G L H + + +G + + + +VP+ +N + E+ G V Sbjct: 328 GTLIHLIELGDEGRVVSSKIIVPTMFN---------IPVMEEMAKGLSVKA------AEA 372 Query: 539 TIHSFDPCMACAVHVVDADG 558 + +DPC+ C HVV G Sbjct: 373 VMRLYDPCIPCTTHVVRLGG 392 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 105/300 (35%), Gaps = 23/300 (7%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQR 59 MS+ IT++ V RI G ++ ENG V A T RG E++V ++P A V R Sbjct: 1 MSE-ITLNKVCRIAGEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMR 59 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 ICG+C +H ++ A E+A+ I P N +R + + H++ F ++ ++ Sbjct: 60 ICGLCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIE- 118 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 K E+L + +H + K+ G+F+ W Sbjct: 119 --------EKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLK 170 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVA--LLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 L + L D VA L K + ++ + N++ + + Sbjct: 171 ARLPKLTGQWEEIAHLLTDEDIQTEVADELREKKAENNYLVSSLFYGDRFNINAERIETM 230 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 Y K + ++ + AFY EF S G Sbjct: 231 PYYEYRKD----------NPHSKESTTLIAFYGGEKVEAGPRARMKVYREFTDSSLYGLH 280 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 110/297 (37%), Gaps = 23/297 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMW-RGMEEIVKNRDPRDAWMIVQRICGV 63 IT+D V RI G ++ E+GVV A T RG E++V ++P A V RICG+ Sbjct: 7 ITLDKVCRIAGEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICGL 66 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 C +H +++ A E A+ + P N + +R + + H + + + A D + Sbjct: 67 CHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHAL-LFLMVAGDLIK----- 120 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 K +++L + +H + K+ G+ + W Sbjct: 121 ---EEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFK 177 Query: 184 NLIAVAHYLQALECQRDANRVVA--LLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM 241 +L A + L D +A L K P + + N++ V ++ Sbjct: 178 DLTASWEAAEELLIDEDIQTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVPY-- 235 Query: 242 YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 +F ++ ++ + +FY ++ EF +S G L Sbjct: 236 ---------YEFRKEEAARESTTLVSFYDGEKVETGPRARMITYREFRDESLYGLHL 283 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 72/418 (17%), Positives = 132/418 (31%), Gaps = 66/418 (15%) Query: 151 VQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGG 210 V + + G +P + + + + H + + + Sbjct: 29 VVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICGLCHASHGIAASEAIEHAIGVTPP 88 Query: 211 KTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID---KLSDFVEQVYKVDTAVIAA 267 + + A+G + + L ++ L+ + D KL DF ++ + A Sbjct: 89 RNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFHAKISDYLLKLGGA 148 Query: 268 F-YPEWLTRGKGAVNYLSVPEFPTDSKNG-SFLFPGGYIENADLSSYRPITSHSDEYLIK 325 +P LT G LSVP++ + F E A+ ++ Sbjct: 149 ATHPPNLTIGG----MLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDIQTEIADELR 204 Query: 326 GIQESAKHS----WYKDEAPQAPWEGTTIPAYDGWSDDG-KYSWVKSPTFYGKTVEVGPL 380 + K+ +Y D + +++P Y+ ++ + S + G+ VE GP Sbjct: 205 EAKRPFKYLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPR 264 Query: 381 ANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQ 440 A M+ E S G + R L Sbjct: 265 ARMI------------TYREFRDE---------------SLYGLHLARIEDTRLAIQRLG 297 Query: 441 NQYSAL-ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQA 498 + I + TF KGVG EAPRG L H++ + ++G + + Sbjct: 298 EILDEIRIEEPFRTGDITFRP--------GKGVGVYEAPRGTLIHYVELGEEGRVLKSRI 349 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 VVP+ +N + E+ G V + +DPC+ C HVV Sbjct: 350 VVPTMFN---------IPVMEEMAKGLSVKA------AEAVMRLYDPCIPCTTHVVRL 392 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 19/280 (6%) Query: 1 MSQRITIDPVTRI--EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIV 57 M + + P EG I+ ++E +V A G + R +E+ R +V Sbjct: 1 MGYKFPLGPYHPAFEEGEY-IELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLV 59 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ------- 110 +R CG+C+ H+ + A E A ++VP A+YIR + H H+++ Sbjct: 60 ERTCGICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGF 119 Query: 111 --LSALDWVDITSALQA-DPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS-GQLGI 166 L W + + + + + ++T + + ++IK + + LG+ Sbjct: 120 DTLFMFTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGL 179 Query: 167 FANGYWGHPAMKLPPEVNLIAV----AHYLQALECQRDANRVVALLGGKTPHIQNLAVGG 222 W A L N+ V AH L + + + L P+ + Sbjct: 180 KLKDTWSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDF 239 Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDT 262 ++ + R++ + I + ++++ Sbjct: 240 DLVVLDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQI 279 Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 84/328 (25%), Gaps = 44/328 (13%) Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNY 282 G+ ER YI+ +L + + + Sbjct: 73 AYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFMFTWS---- 128 Query: 283 LSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQ 342 ++ G N +++ + DE + I+ + + + Sbjct: 129 ------GREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLK 182 Query: 343 APWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIV 402 W + G S K G VGP A R++ + Sbjct: 183 DTWSKD-ASILARTKNVGIVS-RKEAHLLGV---VGPTARGSGIREDLRKTAPYAVY--- 234 Query: 403 AIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPN 462 L L V R R + E I++ + K Sbjct: 235 ----PLLDFDLVVLDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEP 290 Query: 463 IPATGEFKGVGFLEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQS 521 +G +EAPRG L H + + P+ N + E Sbjct: 291 NDV------IGRVEAPRGELAYHLITDGTDKPGRLKIRTPTLIN---------LPASEHM 335 Query: 522 LVGTPVADPNKPLEVVRTIHSFDPCMAC 549 + G+ +AD + DPCM+C Sbjct: 336 MRGSNLAD------APVIVGHIDPCMSC 357 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 67/393 (17%), Positives = 128/393 (32%), Gaps = 47/393 (11%) Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 L + +Y+Q L R+ + H AV + G+ Sbjct: 44 YNLRGLEWIAMRRNYIQLLYL---VERICGICSFSHNHTYTRAV--------EEMAGIEV 92 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 ER YI++ I +L + + + G L + + Sbjct: 93 PERAEYIRAIIGELERIHSHLLNLGV----------VGHAIGYDTVLHLSWLARERVMDI 142 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 GG N +++ + +E + I + KH Y++E + I YD Sbjct: 143 LEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKH--YREEV---MPKVEEIFLYDPT 197 Query: 357 SDDGKYSWVKSP-TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + P + GP A R + + + + I + +T Sbjct: 198 VEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGI-KPITPKEFTG 256 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 R++ R + +I++ + + K V E G+G Sbjct: 257 VIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKAEGAGIGRY 316 Query: 476 EAPRGMLSHWMVIKDG--IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 EAPRG H++ G + ++A P+ ++ ++LVG +AD Sbjct: 317 EAPRGETIHYVRANPGTDTPAKWKAREPT---------FPNLFAVARALVGEQLAD---- 363 Query: 534 LEVVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 V I S DPC++C V ++D++ + + Sbjct: 364 --VPVAIASIDPCLSCTDRVAIIDSETGKKRVL 394 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 4/193 (2%) Query: 4 RITIDPVTR-IEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +I I P+ +E + ++ ++ G RG+E I R+ +V+RIC Sbjct: 10 KIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERIC 69 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ +H + RA E I+VP A+YIR II H H+++ + + + Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHA--IGYDT 127 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L ++ + N ++ + + + + +P Sbjct: 128 VLHLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPK 187 Query: 182 EVNLIAVAHYLQA 194 + ++A Sbjct: 188 VEEIFLYDPTVEA 200 >UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8_RHOCA Length = 503 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 84/556 (15%), Positives = 168/556 (30%), Gaps = 114/556 (20%) Query: 15 GHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 G R+ ++ G V + G+E +++ R + VQR+CG+C Sbjct: 35 GQGRVTICLDARGQVRQVQLHLLDLCGVETLLEGRAIAEIPEAVQRLCGLCPV------- 87 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 H H + A+D + L T +E Sbjct: 88 -----------------------------SH--HLAAVKAMDRIAGYDRL----TPTAEK 112 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 L+ + + ++ + + G+ PA + +V + Sbjct: 113 LRRLMQYGQIVQSHAVQLYHLAEPD--------LLLGFDSEPARRGLVDVARAFPQLATE 164 Query: 194 ALECQRDANRVV-ALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSD 252 + +R VV A+ GG+ GG+ P+ +++ +D++ D Sbjct: 165 GVLMRRFGQEVVRAITGGRLR-GAGAVPGGMRRPLPRAAR--------DQLRADVDQVID 215 Query: 253 FVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSY 312 + +V + P + + + + +G+ F G + D Sbjct: 216 WAAGALRV-LERLHGTNPAFYDHPPRP----AATSWRWSAPSGAVDFYDGRLRARDARGA 270 Query: 313 RPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYG 372 + + E + P G + Sbjct: 271 TLFDAVPAAAYRGVLAEPSG------------------PGGPHLRALGPET--------- 303 Query: 373 KTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHC 432 VGPLA + V E + + ++A + L ++ R V Sbjct: 304 GWYRVGPLARLQVCDLLTSEKAETERQRLLA--------PGDGKPLQGSVFHHGARLVEL 355 Query: 433 CELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-G 491 +++++ P + + VG +EAPRG L + + G Sbjct: 356 LHAAELIRDLLDD----PELLGTDLMADRGAP---QREAVGVIEAPRGTLLQRYEVDEAG 408 Query: 492 IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAV 551 I ++ + NS + G Q G V + + I +FDPC++CA Sbjct: 409 RIRRCTLLLSTRNNSRAMDAALQ-GVAAQYCDGRRVT-EDLLAHIEVAIRAFDPCLSCAA 466 Query: 552 HVVDADGNEVVSVKVL 567 H + G +SV+++ Sbjct: 467 HAL---GQMPLSVELI 479 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 67/393 (17%), Positives = 122/393 (31%), Gaps = 45/393 (11%) Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 L + +Y+Q + A R+ + H AV + G+ Sbjct: 44 YNLRGLQWIAYRRNYVQIMYL---AERICGICSFSHNHTYTRAV--------EEAAGIEV 92 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 ER YI++ I +L + + L G L + + Sbjct: 93 PERAEYIRAIIGELERVHSHLLNLGV----------LGHDIGYDTVLHLTWLARERVMDV 142 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G N + + + DE + I + K+ Y+ PQ P + Sbjct: 143 LEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKY--YRSIMPQIEEVFLHDPTIEAR 200 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 D + G VGP A R S + + + + + + Sbjct: 201 LRDCAVISKRVALEQG---AVGPTARASGLKVDARWSERLGVYPDLGVKPVMPQDVTGEK 257 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITN-IGKGDHTTFVKPNIPATGEFKGVGFL 475 R R + D+L++ + I + + + +G+G Sbjct: 258 PHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKIMVDGEGIGRY 317 Query: 476 EAPRGMLSHWMVIKDG--IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 EAPRG L H++ K G ++ P+ ++ + + G VAD Sbjct: 318 EAPRGELVHYVRGKKGSDKPLRWKPREPT---------FPNLFAVAKGVTGDQVAD---- 364 Query: 534 LEVVRTIHSFDPCMACAVHV-VDADGNEVVSVK 565 V + S DPC++C V V DG + + + Sbjct: 365 --FVLAVASIDPCLSCTDRVAVVQDGKKRILTE 395 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 4/206 (1%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +I P+ +E + ++ + G RG++ I R+ + +RIC Sbjct: 10 KIPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERIC 69 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ +H + RA E A I+VP A+YIR II H H+++ L + + Sbjct: 70 GICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHD--IGYDT 127 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L ++ + N ++ + + + + ++ Sbjct: 128 VLHLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQI 187 Query: 182 EVNLIAVAHYLQALECQRDANRVVAL 207 E + L ++ VAL Sbjct: 188 EEVFLHDPTIEARLRDCAVISKRVAL 213 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 90/287 (31%), Gaps = 23/287 (8%) Query: 2 SQRITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQ 58 + I + PV IE GH R E + A +G+E++++ +D + IV+ Sbjct: 188 TFEIPVGPVHAGIIEPGHFRFQTIGETVLHLDAQL-FYTHKGIEKLLEGKDLEEGLKIVE 246 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R+CGVC +HAL+ A E ++VP R ++ ++H+ L A V Sbjct: 247 RVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAG--VG 304 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLG------------- 165 ++ + + +K + + Sbjct: 305 FALGNVNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQDF 364 Query: 166 ----IFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVG 221 + G + V A L A+ + + H+ + Sbjct: 365 EEWLPLIQEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEELK 424 Query: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAF 268 + + R+ +K L++ +E + DT F Sbjct: 425 MEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDFLQDTVEQGDF 471 Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 25/176 (14%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP A RE + L E + + +V Q R++ R + Sbjct: 398 TGPAARASGISQDWRERHAHLLYEELKME-------PQVEQEGDVWSRLMVRVREVKQSF 450 Query: 437 DILQNQYSA--LITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GII 493 +L L + +GD G E+PRG W+++ D G I Sbjct: 451 ALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQPYSFAWGCAESPRGTDVIWLMLDDEGKI 510 Query: 494 SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 + S N ++ G V D + SF+ C +C Sbjct: 511 YRCRIRSASYANWA---------AVPLAVQGNIVPDFPLINK------SFELCYSC 551 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 119/350 (34%), Gaps = 43/350 (12%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 + I+P+ R+ ++ +V G + RG+E+ + D A + +R+CG+ Sbjct: 13 VWIEPI-------RLKLALDGELVKDVELEAGYVHRGLEKKFE-WDYNKAAYLAERVCGI 64 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ---------LSAL 114 CT H+ A ES + +++P A IRNI+L H H++ L L Sbjct: 65 CTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFML 124 Query: 115 DWVDITSALQ-ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + + L + T + +L G++ + ++ +I D + + Sbjct: 125 CFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLEDMI 184 Query: 174 HPAMKLPPEVNLIAVAHYLQALECQRD--ANRVVALLGGKTPHIQNLAVGG------VAN 225 + + + + + AL+ R + L G V Sbjct: 185 VHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHVVEE 244 Query: 226 PINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYK---------VDTAVIAAFYPE----- 271 ++ ++ + L I +L +E + D A P Sbjct: 245 GCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKTMPDGDGFARVEPPRGELF 304 Query: 272 WLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDE 321 + RGK + V + NG L P I+ L+ PIT D Sbjct: 305 YFVRGKKSKELDRVKVRTSTYANGPALIP--VIKGCQLADVGPITISYDP 352 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 27/173 (15%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R L + + V + R I R + Sbjct: 211 VGPIARGSGIPYDVRIDAPYLLYGELKMKH-------VVEEGCDVWARSIVRVRELFQSI 263 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 D+++ L + P + G +E PRG L +++ K + Sbjct: 264 DLIRQLVPMLEGLPDDILAKSKTMP------DGDGFARVEPPRGELFYFVRGKKSKELDR 317 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 V ST+ +GP +L+ PV + +V S+DPC+ C Sbjct: 318 VKVRTSTYANGP------------ALI--PVIKGCQLADVGPITISYDPCIGC 356 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 98/566 (17%), Positives = 164/566 (28%), Gaps = 170/566 (30%) Query: 1 MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 M RI I P +R EGH + E+++ + K R I Sbjct: 1 MKDRIVISPTSRQEGHAELVMEVDDEGIVT---------------KGR----YLSITP-- 39 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 VR E + P A + Sbjct: 40 ------------VRGLEKMVAGKNPETAPVL------CQRIC----------------GV 65 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + + E K ++ + A + A Sbjct: 66 CPIPHTLASVEAIDHSLD-------IEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFV 118 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERL 240 PE + + A+ ++ VV +L G+ H ++ VGG+A I Sbjct: 119 PEEDFTTAVKSVSAVR--KNVQYVVDMLAGEGIHPSDIRVGGMARNITSATK-------- 168 Query: 241 MYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP 300 ID+L F P+ + ++++ E P Sbjct: 169 ---DKLIDRLKAF---------------KPDMEKHVELMKSFIAARELPE---------- 200 Query: 301 GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDG 360 G + +A L + + DE+ E +WY D + G Sbjct: 201 GLGVVDAPLLASSASYGNLDEFDYDNFSEVLPEAWYDD------------------PEIG 242 Query: 361 KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHS 420 K + P GK VE GP A M ++ K Sbjct: 243 KKACTTIPLINGKNVETGPRARM---------------DKFNGFKDK------------G 275 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK-GVGFLEAPR 479 + + + R ++ + + D + + + G K G+G +E PR Sbjct: 276 VVAQHVARAEEMLNNYNLTIDLLEQI-------DTSAPARADYDDRGTGKLGIGVIEGPR 328 Query: 480 GMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRT 539 G H +KD I Y A+VP+TWN +GP + AD Sbjct: 329 GTNVHMANVKDSKIQFYSAIVPTTWNIP------TMGPATEGFHHKYGAD---------V 373 Query: 540 IHSFDPCMACAVH--VVDADGNEVVS 563 I ++DPC++CA H VVD + ++ Sbjct: 374 IRAYDPCLSCATHVMVVDDEDKSILK 399 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 6/259 (2%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + P+ IE GH R ++ A T +G E+I + A + +RIC Sbjct: 176 IPVGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFT-HKGTEKIFETMPYTKALFLAERIC 234 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQL-SALDWVDIT 120 GVC +HA +A E I++P A++IR I++ ++HI + + ++ Sbjct: 235 GVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGI 294 Query: 121 SALQADPTKASEMLKGVST-WHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + ++ + ++ +L V+ I D + L + + + Sbjct: 295 AHGFRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTK 354 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLER 239 + + + R + ++G + V +P ++ Sbjct: 355 MMFKSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPV 414 Query: 240 LMYIKSFIDKLSDFVEQVY 258 Y + ++ V++VY Sbjct: 415 FHYEGDVLARIRVRVDEVY 433 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 47/315 (14%), Positives = 90/315 (28%), Gaps = 44/315 (13%) Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 R +I++ + +L + V + + G YL + ++ G+ Sbjct: 258 PPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYL---QQLNETITGN 314 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G + + + ++ L K I H KD + D Sbjct: 315 RYLRG-------MLAIGGVRFDINDDLEKHILSLLNHVK-KDFKDLTKMMFKSSSLLDRL 366 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 G+ S + VG A + R + E V + Sbjct: 367 ETTGRLSEEIARGLG----VVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHY----- 417 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 L RI R + I++ + + K + + ++E Sbjct: 418 -EGDVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYK-------QALSYVE 469 Query: 477 APRGMLSHWMVIKDG-IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 +PRG +W++ G + Y+ PS N ++ G V D + Sbjct: 470 SPRGENIYWIMTAPGNKLFRYKVRSPSFCNW---------PAIPFAVPGNIVPDFPLINK 520 Query: 536 VVRTIHSFDPCMACA 550 SF+ C +C Sbjct: 521 ------SFELCYSCT 529 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 79/249 (31%), Gaps = 11/249 (4%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G L+++ E+ + +A G + RG+E+++++R ++ V + + L+ Sbjct: 19 HGVLQVELELSGERIERAKPILGYLHRGIEKLMESRTYAQCLPYTDKLDYVSSMNNNLAW 78 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKA-- 130 A E I VP+ A+Y+R I + H+V L D T+ + A + Sbjct: 79 CTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTL-LNDLGAATAFVYAFRDREKV 137 Query: 131 -SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 S V + N I A Sbjct: 138 LDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVPEMLEEYDNLITGNEIFYA 197 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + + ++L G G I+ + V + ++ + + Sbjct: 198 RMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYDRLDFEVPVGTLGDDWDRY 257 Query: 244 KSFIDKLSD 252 + + ++ + Sbjct: 258 EVRLKEIGE 266 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 9/148 (6%) Query: 385 VKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYS 444 L A + + E ++Y +L + V L R R E I++ Sbjct: 218 ANLRATGVAYDIRRVEPYSVYDRL-DFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALK 276 Query: 445 ALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG--IISNYQAVVPS 502 + + + ++P + +E RG L + ++ DG PS Sbjct: 277 EMPEGSCRKVVSPNLRPP-----KGSVYHRVENTRGELG-FYIVSDGTAKPYRVHIRRPS 330 Query: 503 TWNSGPRNFNDDVGPYEQSLVGTPVADP 530 N + S+V DP Sbjct: 331 FVNLQALDPLCRGTLVADSVVVYSTLDP 358 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 65/395 (16%), Positives = 125/395 (31%), Gaps = 47/395 (11%) Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLN 236 L + +Y+Q + A R+ + H AV + G+ Sbjct: 43 YNLRGVQWIGMRRNYVQIMYL---AERMCGICSFSHNHTYVRAV--------EEMAGIEV 91 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 ER YI+ + +L + + + G L + + Sbjct: 92 PERAEYIRVIVGELERIHSHLLNLGV----------VGHDIGYDTVLHLTWLARERVMDV 141 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G N + + + E + I + K+ Y++ P + + +D Sbjct: 142 LEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKY--YREVLP----QIEDVFLHDST 195 Query: 357 SDDGKYSWVKSPT-FYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + P + VGP A R S Q + + I + Sbjct: 196 IEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVTPEDVTGE 255 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITN-IGKGDHTTFVKPNIPATGEFKGVGF 474 R+ R D+L++ + I + + G+ +G+G Sbjct: 256 KARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLGDGEGIGR 315 Query: 475 LEAPRGMLSHWMVIKDGI--ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 EAPRG L H++ + G ++ P+ ++ ++L G +AD Sbjct: 316 YEAPRGELVHYVRGQKGRDGPVRWKPREPT---------FPNLFTIAKALEGNELAD--- 363 Query: 533 PLEVVRTIHSFDPCMACAVHV-VDADGNEVVSVKV 566 +V I S DPC++C V + +G +VV + Sbjct: 364 ---LVVAIASIDPCLSCTDRVAIVKEGKKVVLTEK 395 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 25/253 (9%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +I P+ +E + ++ + G RG++ I R+ + +R+C Sbjct: 9 KIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMC 68 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ +H + VRA E I+VP A+YIR I+ H H+++ + + + Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHD--IGYDT 126 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 L ++ + N ++ + Q + Sbjct: 127 VLHLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLI-------------- 172 Query: 182 EVNLIAVAHYLQALECQRDA----NRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 L + +Y + L D + + A L + LA+ A G G+ Sbjct: 173 ---LDMIKYYREVLPQIEDVFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKED 229 Query: 238 ERLMYIKSFIDKL 250 R L Sbjct: 230 SRWSEQLGVYPDL 242 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 83/267 (31%), Gaps = 12/267 (4%) Query: 2 SQRITIDPVTRI-EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQR 59 + I + P G LR+ ++ V A G + R E++ +NR R Sbjct: 39 TFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRTWAKFLPNTSR 98 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 I + + + V E L I+VP A+YIR I + H V + L LD Sbjct: 99 IDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGAL-LLDLGGF 157 Query: 120 TSALQA--DPTKASEMLKGVSTWH-LNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 T L A D K ++L+G+ F + N D G Sbjct: 158 TPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRPRLKM 217 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLD 230 + N+I D R G G ++ V + Sbjct: 218 YRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPKLQFK 277 Query: 231 GLGVLNLERLMYIKSFIDKLSDFVEQV 257 + + +D++ + + + Sbjct: 278 IPTYPECDSMARYLVRMDEMEESLNII 304 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 64/269 (23%), Gaps = 31/269 (11%) Query: 272 WLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESA 331 L G + + + G + + + +D+ +KG +E Sbjct: 151 LLDLGGFTPILYAFDD--REKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFV 208 Query: 332 KHSW-----YKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVK 386 K+ Y+D + G S + GP+ Sbjct: 209 KYMRPRLKMYRDLVTDNVI------LRQRLTGIGPISADTCRKYG----ATGPVIRGSGV 258 Query: 387 LAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSAL 446 R + + + ++ R + R E +I++ Sbjct: 259 AYDVRRAEPYSVY-------PKLQFKIPTYPECDSMARYLVRMDEMEESLNIIEQCLD-- 309 Query: 447 ITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI--ISNYQAVVPSTW 504 I G P + +EA RG + + DG + PS Sbjct: 310 --LIQPGPFMAPKVPRVIRLPAGDYTYAVEAARGRFMVRV-VSDGKENPYRARLRTPSFG 366 Query: 505 NSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 N +L D P Sbjct: 367 NLSLFEETSRGMLLPDALAMMGSLDLVIP 395 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKN-RDPRDAWMIVQRIC 61 I I P +E ++ ++ + + RG+E++ ++ + + + +RIC Sbjct: 164 IPIGPFYPSLEEPAYFRLIVDGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERIC 223 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 G+C H+ + +A E A I++P+ A++IR++ L H H++ + Sbjct: 224 GICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLLWVGLAA 274 Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 32/190 (16%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP+A R + ++ I + + + R I R + Sbjct: 373 GPVARGSGINIDMRTNFPYAAYPMLNI-------RIPLNKSGDVWARTIVRLEEILISIN 425 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISNY 496 I++ + + + V ++EAPRG L H+++ +G + Sbjct: 426 IIRQILENIPEGPTSIKISKIEPWK-------EAVSYIEAPRGQLFHYVMTGPEGRPYRW 478 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAV--HVV 554 PS N L G +AD I S DPC +C +V Sbjct: 479 SVRAPSYQNY---------QALSVMLKGASIAD------APLIIGSIDPCFSCTERYEIV 523 Query: 555 DADGNEVVSV 564 D N + Sbjct: 524 DLKTNSIKVY 533 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 89/277 (32%), Gaps = 17/277 (6%) Query: 13 IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHAL 70 +E ++ ++ + RG+E+I + R I +RICG+C TH+ Sbjct: 208 LEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICGCTHST 267 Query: 71 SSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALDWVDITS------ 121 + +A E+A I+VP A+YIR I+L H H+++F L D+ + + Sbjct: 268 AYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYGFMKAWRIREH 327 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK-LP 180 + + + + + + V F+ + Sbjct: 328 VMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELVDEAISTSTFV 387 Query: 181 PEVNLIAVAHYLQALECQRD---ANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL-- 235 + + V Y A E D + H VL Sbjct: 388 KRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVPVYKEGDVLAR 447 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEW 272 L R+ + I + ++Q+ D P + Sbjct: 448 ALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPY 484 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 104/346 (30%), Gaps = 49/346 (14%) Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-AVN 281 + G+ ER YI++ + ++ + Y + + Sbjct: 268 AYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYGFMKAWRIREH 327 Query: 282 YLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP 341 + + + G+ G + E ++K I+ + S DEA Sbjct: 328 VM----WLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKT--EFSELVDEA- 380 Query: 342 QAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 +T G + + + GPL + R + Sbjct: 381 -----ISTSTFVKRLEGVGVLPYKVAKEWDVD----GPLGRGSGRDFDVRRDHPYAAYKY 431 Query: 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKP 461 + + V + L R + R E I++ + ++ Sbjct: 432 LDF-------KVPVYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPY 484 Query: 462 NIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 + + +G EAPRG H+++ ++ + Y+A + +++ Sbjct: 485 S-------EAIGMTEAPRGENIHYVMTGENNKVYRYRARAAT---------YNNLPAVPD 528 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 + G +AD + S DPC +C V VVD + +V + Sbjct: 529 MMRGYTIAD------APLIVASIDPCYSCTERVQVVDVESGKVRVL 568 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 25/279 (8%) Query: 2 SQRITIDPVT------------RIEGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNR 48 +QR +DP+ G LR +++ + K G + RG+E++ +++ Sbjct: 55 TQRSEVDPLENEMILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHK 114 Query: 49 DPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 ++ R+ + ++ ++ A E +I+VP AQ+IR I+ H + Sbjct: 115 TYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWL 174 Query: 109 YQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA 168 +D ++ + + E+ + + + + + + Sbjct: 175 GV-GMMDAGAVSGFVWTF-QEREEIYSIMDEVAGARFTVSHSRIGGVANDFSPRAIEMIR 232 Query: 169 NGYWGHPA----MKLPPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNL 218 + P + N I V ++ + L G G ++ Sbjct: 233 DFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRF 292 Query: 219 AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 + ++ + L +D++ V + Sbjct: 293 EPYLKYDEVDFTIPVREEGDCLARYFLRLDEMKQSVRII 331 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 2/141 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+E V+ K G + RG+E++ ++ + I R+ + + + + Sbjct: 23 HGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSEDLTYVQSLPITDRMDYLSSMVNNVGF 82 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E + I +P A++IR I+ H+V ALD +T L A + Sbjct: 83 CVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWI-ATHALDIGAMTVFLYAMRDREYL 141 Query: 133 MLKGVSTWHLNSPEEFTKVQN 153 + + +V Sbjct: 142 LELFEMVTGARLTVSYPRVGG 162 Score = 55.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 47/192 (24%), Gaps = 46/192 (23%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R+ + V L N R R + + Sbjct: 220 TGPTLRGSGVYYDVRKFFPYDAYDKVDFEVPLGKNG-------DIYDRYKCRMLEFRQSA 272 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPA-----------------------TGEFKGVG 473 I++ L ++ ++ + Sbjct: 273 KIIKQCIERLPDGSILAENALRIRMPESPLKIDKKDIIFDVYIEDKQIQEFIQKFTEVYA 332 Query: 474 FLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +EAPRG L ++V + + PS G + G+ VAD Sbjct: 333 SVEAPRGELGFYIVCDNSSKPYRMRVRAPS---------FVHAGVLPKLCEGSLVAD--- 380 Query: 533 PLEVVRTIHSFD 544 V+ I S D Sbjct: 381 ---VIANIGSID 389 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 75/200 (37%), Gaps = 3/200 (1%) Query: 5 ITIDPVTRIEGH-LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 I P + L +D +++ V + G + RG+E++V+ +D + +RICG Sbjct: 7 IPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVAERICG 66 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 +C+ H+L E + ++VP A+Y+R I+ H H++ L+A + Sbjct: 67 ICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLG-LAADAFGFEALF 125 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 + + + + +T ++ I+D+ I A Sbjct: 126 MHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYAELMA 185 Query: 183 VNLIAVAHYLQALECQRDAN 202 L + + + R Sbjct: 186 TFLNDTSVRSRLVNVGRLTQ 205 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 86/321 (26%), Gaps = 46/321 (14%) Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 +GV R Y++ + +LS + + A A + + Sbjct: 84 MGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGFEALFMHSWRI----------RE 133 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 F G + D+ +K I A + E + Sbjct: 134 RVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQIS--ATLDGMRSEYAELMATFLNDT 191 Query: 352 AYD-GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTG 410 + + G+ + ++ VGP A R Y +L Sbjct: 192 SVRSRLVNVGRLTQTQAEDL----CMVGPFARASNVKFDCRMLGN-------GAYGELEN 240 Query: 411 NTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFK 470 + R+ R + DI+Q + + + + + + Sbjct: 241 FQPILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIG------ERSKLTPPDGAQ 294 Query: 471 GVGFLEAPRGMLSHWMVIKDGI-ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 LE PRG ++ + + P++ N + G +AD Sbjct: 295 AANVLEQPRGECYYYARGNGSKNLERMRMRTPTSQNLA---------GLVAACEGAELAD 345 Query: 530 PNKPLEVVRTIHSFDPCMACA 550 V + + DPC++C Sbjct: 346 ------VPNILLTIDPCISCT 360 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 106/377 (28%), Gaps = 47/377 (12%) Query: 2 SQRITIDPVTR-IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQ 58 + + + PV IE ++ + + RG+E+ + R + + Sbjct: 210 TTLVPMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAE 269 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RICG+C H++S A E ++D+P A+YIR ++L H+H++ + L V Sbjct: 270 RICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHL--VG 327 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + ++ V N + + ++ + + Sbjct: 328 YDTGFMHAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILK--------- 378 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 V + L+ + N + G +A G Sbjct: 379 ----VVKQIREETKKFLDIALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDT 434 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 RL + + Y E + V + E + Sbjct: 435 RLDQATKTA---------MAYNEVDFKVPVYKEGDVLARVLVRMDELFESLWIVEQLIDQ 485 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSD 358 PGG I PI + G E+ + E G Y Sbjct: 486 MPGGDIMV-------PIGDLPEYEEALGFTEAH-----RGEVVHYVMTGEKNKVYRWK-- 531 Query: 359 DGKYSWVKSPTFYGKTV 375 V++PT+ Sbjct: 532 ------VRAPTYNNLPA 542 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 96/331 (29%), Gaps = 44/331 (13%) Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGS 296 +R YI++ + +L + V A Y + + + G+ Sbjct: 296 PDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPV---MWLVERLTGN 352 Query: 297 FLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW 356 G I ++K I+E K + + Sbjct: 353 RKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDIALNTNTFIKRAEGVGILPY 412 Query: 357 SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVA 416 YS + GP A + R K A+ + V Sbjct: 413 KVAKAYSVL------------GPTARASGRRIDTRLDQATKT----AMAYNEVDFKVPVY 456 Query: 417 QLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLE 476 + L R++ R E I++ + + + +GF E Sbjct: 457 KEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYE-------EALGFTE 509 Query: 477 APRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 A RG + H+++ + + ++ P+ +++ + L G VAD Sbjct: 510 AHRGEVVHYVMTGEKNKVYRWKVRAPT---------YNNLPAVPEMLKGYHVAD------ 554 Query: 536 VVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 I S DPC +C V VD + +V + Sbjct: 555 APLIIASIDPCYSCTERVQFVDVETGKVKVL 585 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 5/166 (3%) Query: 1 MSQRI-TIDPVTRIEGH-LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIV 57 M++ I P + L + IEN V +A G + RG+E + + RD IV Sbjct: 1 MARTILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIV 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +R+CG+C+ HAL E + ++VP A+Y+R I H H H++ + D Sbjct: 61 ERVCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFA--DAF 118 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ 163 S ++ + N V ++ ++ Q Sbjct: 119 GFESLFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQ 164 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 67/218 (30%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+ R++ +E+ G V + R R + Sbjct: 213 VGPMLRGSGWAQDARQTGYAAFDEL--------GFEPVVEYGGDSYARCAVRFRETLQSI 264 Query: 437 DILQNQYSALITN------------------------------------------IGKGD 454 DI++ + + D Sbjct: 265 DIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERRDIMQAYNRDKHHKITAAPPPNLD 324 Query: 455 HTT-FVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISNYQAVVPSTWNSGPRNFN 512 T V + + + V +E PRG L +++ + + P+ Sbjct: 325 LPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNGSKNMERVRIRTPT---------F 375 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 ++ P L G +AD V + S DPC++C Sbjct: 376 ANIPPLLAILPGCELAD------VPVIVLSIDPCISCT 407 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 11/213 (5%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRIC 61 I + P + + ++ V A + + RGME++ ++R + +RIC Sbjct: 161 IPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERIC 220 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALD--W 116 G+C TH+ + +A E A I VP AQYIR I+L H H++ F L D + Sbjct: 221 GICGCTHSAAYCQAVEDAAGIYVPERAQYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGF 280 Query: 117 VDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + I A + A + T+ +N V+ I + L + Sbjct: 281 MHIWRAREYIMDIAELITGNRKTYGINIVG---GVRRDITEDKKEKTLKLLDMVEKESRE 337 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLG 209 + + R + ++G Sbjct: 338 VLDNIAEMKELRERMEGVGVLPKKEAREIGVVG 370 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 32/189 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R + + + V + R + R E Sbjct: 369 VGPMARSSGIDTDVRRDHPYAAYKDLDF-------KVPVYKEGDVFARFLVRYEEIFESF 421 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISN 495 ++++ + + IP G+G EAPRG H ++ + +I Sbjct: 422 NMIRQALENMP-----PGELINDEYEIPPFK--LGIGVTEAPRGENIHAVITWGENMIYR 474 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV-- 553 + + +++ L G VAD I S DPC +C HV Sbjct: 475 WHPRAAT---------YNNLPAVPIMLRGNDVAD------APLIIASIDPCFSCTDHVSI 519 Query: 554 VDADGNEVV 562 +D++ +++ Sbjct: 520 IDSESGKIL 528 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 16/256 (6%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ V A G M RG E++ + RD R M+ R + ++ L Sbjct: 43 HGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIMLANRHDWLSAFSNELGV 102 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E L ++VP A + R ++ + +H++ S + + + + E Sbjct: 103 VMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLG--SYPLELGGITPVFHAFREREE 160 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYL 192 + + +K+ V +G G + + ++ NL+ Sbjct: 161 LQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRS-RMDVYENLVLGN--- 216 Query: 193 QALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSD 252 E R R V +L H GV+ PI +L R ++ +L D Sbjct: 217 ---EIFRGRTRDVGVLSAAAVH-----AYGVSGPIARASGVDFDLRRDEPYLAY-GELRD 267 Query: 253 FVEQVYKVDTAVIAAF 268 ++ V + + +A F Sbjct: 268 TLKVVTRTEGDCLARF 283 Score = 42.6 bits (98), Expect = 0.045, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 18/159 (11%) Query: 373 KTVEV-GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVH 431 V GP+A R + K + L R Sbjct: 235 HAYGVSGPIARASGVDFDLRRDEPYLAYGELRDTLK-----VVTRTEGDCLARFECLLEQ 289 Query: 432 CCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG 491 D+ + P + E + E P G+ +++V K Sbjct: 290 TLNSLDLADACLDRMA--HLAPGPINQRLPKVLKAPEGHTYAWTENPLGVNGYYLVSKGE 347 Query: 492 I-ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 + S +++ + L GT VAD Sbjct: 348 KTPYRLKLRSAS---------FNNIQALTELLPGTLVAD 377 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 99/335 (29%), Gaps = 35/335 (10%) Query: 229 LDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEF 288 D + R YI+S + +L + A + G Sbjct: 83 EDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACYTIGFDSAFHLGM----------M 132 Query: 289 PTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGT 348 + G N +++ + +++ + + + Y++E Sbjct: 133 LREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHY--YRNEFASFYEAAI 190 Query: 349 TIPAYD-GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQK 407 P D G + ++ + +GP + A R S + + Sbjct: 191 NDPVVKARLRDVGVLTTEQAIKY----CALGPTSRGSGVRADVRWSAPYDAYCDI-HVEP 245 Query: 408 LTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG 467 + R + R + DIL+ L + + Sbjct: 246 VVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLLTVLKKA 305 Query: 468 EFKGVGFLEAPRGMLSHWMVIK--DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 E G G +EAPRG +H + +K + ++ P+ N ++ Sbjct: 306 EGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSN---------------AVSWP 350 Query: 526 PVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 + N+ + I+S DPC++C +V +D + Sbjct: 351 LMFKDNELADAPLIINSIDPCISCMERMVLSDTSS 385 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 109/285 (38%), Gaps = 28/285 (9%) Query: 2 SQRITIDPVTRIEGHLRID------CEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAW 54 + ++ I PV H+ + +IE + A G + RG+E + + R+P Sbjct: 6 TYKLPIGPV-----HVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQVI 60 Query: 55 MIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF------ 108 + +R+CG+C+ +HA++ V+A E A I+VP+ AQYIR+++L H HI+ Sbjct: 61 YLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACYT 120 Query: 109 ------YQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASG 162 + L + + L+A + + V+T + V + D++ Sbjct: 121 IGFDSAFHLGMMLREKVMDVLEA--LSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYY 178 Query: 163 QLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGG 222 + + + + + V QA++ + G ++ A Sbjct: 179 RNEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALG--PTSRGSGVRADVRWSAPYD 236 Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAA 267 I+++ + + ++ + L E + +D Sbjct: 237 AYCDIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIM 281 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 5/172 (2%) Query: 13 IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 + G +D IE V KA+ G + +G+E+I++NR + R+C + + T+ + Sbjct: 41 VPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIVYTDRMCYLASITNNEA 100 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV----HFYQLSALDWVDITSALQADP 127 A E L I P AQYIR I+ H++ L A + + Sbjct: 101 YCGAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDRE 160 Query: 128 TKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 M ++ F V+N + D A I Sbjct: 161 DIVYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILKRMRERTEEYMD 212 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 26/188 (13%) Query: 368 PTFYGKTVEVGPLA-----NMLVKLAAGRESTQ--NKLNEIVAIYQKLTGNTLEVAQLHS 420 P + + +G L+ + V R S + E + + + Sbjct: 218 PIYTRRMRGIGVLSPGDARRLGVSGPPLRASDTPYDMRREDPILVYPDLDFKVVTRKAGD 277 Query: 421 TLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRG 480 R+ R E I++ + + +KP + +E PRG Sbjct: 278 AEARVEVRLEEILESIHIIEQCLDQIPDGPIQEKLPKKIKPE-----PGEAYYRVEDPRG 332 Query: 481 MLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 + + V+ DG Y+ V Y P+ + +VV Sbjct: 333 EMG-FYVVSDGSEKPYRVKV-------------RGPVYAYMQALPPLLEGAYVADVVAIA 378 Query: 541 HSFDPCMA 548 S D C + Sbjct: 379 GSMDACTS 386 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 5/166 (3%) Query: 1 MSQRI-TIDPVTRIEGH-LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIV 57 MS+ I P + L + +E+ + +A G + RG+E + RD IV Sbjct: 1 MSRTIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIV 60 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +R+CG+C+ HA+ + E+ +N++VP A+Y+R I H H H++ + D Sbjct: 61 ERVCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFA--DGF 118 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ 163 S ++ N V ++ + Q Sbjct: 119 GFESLFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQ 164 Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 32/175 (18%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP R+ +E+ + + R R + + Sbjct: 213 VGPTLRGSGVAQDARQLGYAAFDEL--------DFEPVTSPEGDSWARSKVRFMETLQSM 264 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 DI++ S L + + +P + V +E PRG L +++ + Sbjct: 265 DIVRQAISRLPD--------SELAAKVPGKPTGEVVCRVEQPRGELLYYLKGNGSKNMER 316 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + P+ ++ P L G +AD V + DPC++C Sbjct: 317 VRIRTPT---------FANIPPLLAMLPGAQLAD------VPIAALTIDPCISCT 356 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 78/249 (31%), Gaps = 11/249 (4%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ V+KA G + RG+E++ + R+ VC T+ + Sbjct: 212 HGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEGLHYMQVIPHTDRLDYVCAMTNNYAY 271 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 VRA E + + +P A+Y+R I+ H+ ALD +T + Sbjct: 272 VRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFWLGT-QALDIGAMTVFFWTFREREVL 330 Query: 133 MLKGVSTWHLN---SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 + + V + + G + N I VA Sbjct: 331 LDFFEQLCGARLTLNYYRIGGVDGDLTPALIERLRGFLKTFPEHVQEYDTLLQRNRIWVA 390 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + L G G ++ L GV + + D + Sbjct: 391 RTKNVAVISAEDAINFGLTGPTLRGSGVAYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRY 450 Query: 244 KSFIDKLSD 252 ++++ Sbjct: 451 WIRVEEMKQ 459 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 91/273 (33%), Gaps = 8/273 (2%) Query: 3 QRITIDPVTRIE---GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQ 58 + I + P+ GH R+ + E +V + + RGME++ + R + + Sbjct: 182 RVIPVGPLHITSDEPGHFRLFVDGEQ-IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 R+CG+C H+++ + E+AL I+VP A IR+I+L H H+++ +V Sbjct: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH--FVG 298 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKI-KDLVASGQLGIFANGYWGHPAM 177 + + + + + + +D++ +L + Sbjct: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNL 237 E+ L + ++ L P+ + + + Sbjct: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVM 418 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYP 270 R+ + L ++ + Y Sbjct: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK 451 Score = 92.2 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 25/186 (13%) Query: 382 NMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQN 441 R+ ++ + TL R++ R + +L+ Sbjct: 374 RTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 Query: 442 QYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVV 500 + + ++ +GF+EAPRG HW ++ + + ++ Sbjct: 434 ALDNMPDTPLLTEGFSYKPH-------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 Query: 501 PSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVVDADG 558 + N L G V+D I S DPC +C V +VD Sbjct: 487 ATYANW---------PVLRYMLRGNTVSD------APLIIGSLDPCYSCTDRVTLVDVRK 531 Query: 559 NEVVSV 564 + +V Sbjct: 532 RQSKTV 537 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 81/274 (29%), Gaps = 15/274 (5%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G R+ +I+ + +A G + RG E++ +N R+ V T+ Sbjct: 35 HGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAENLTYTQIIPYTDRMDYVSAMTNNYVL 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E+ + +++P AQ++R I + + H+V + LD + L A + + Sbjct: 95 CHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTF-LLDIGAMGPFLYAFRDRETI 153 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS---GQLGIFANGYWGHPAMKLPPEVNLIAVA 189 + + +V D N I + Sbjct: 154 LDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKELNNYHQLVTGNEIFIN 213 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + + +L G G ++ + + D + + Sbjct: 214 RLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRFEFDVPTATEGDCMARY 273 Query: 244 KSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK 277 + ++ + + + F E GK Sbjct: 274 HLRMAEIEQSLRILE----QALEQFPSEGEVMGK 303 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 38/392 (9%), Positives = 98/392 (25%), Gaps = 39/392 (9%) Query: 159 VASGQLGIFANGYWGHPAM-KLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQN 217 + N HP+ + V I +A+ +R L + Q Sbjct: 16 TGLRTEEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAENLTYTQI 75 Query: 218 LAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK 277 + + ++ N +++ + Q ++ + + G Sbjct: 76 IP---YTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGT 132 Query: 278 GAVNYLSVPEFP-----TDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAK 332 ++ ++ F ++ F G + + + + +E + Sbjct: 133 FLLDIGAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQ 192 Query: 333 HSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE 392 + K+ + GK+ + + G + R+ Sbjct: 193 YMK-KELNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLS----GVMLRSTGVKWDLRK 247 Query: 393 STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGK 452 + + + A + R R + IL+ + Sbjct: 248 DEPYCIYD-------RFEFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSE--- 297 Query: 453 GDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFN 512 P + + +E+PRG + ++ G ++ R Sbjct: 298 -GEVMGKVPRVIRPPAGETYVRIESPRGEIGCYIA-SQGKDKPWRL-------KFRRPSF 348 Query: 513 DDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 ++ + L G +V + S D Sbjct: 349 TNLQILPKLLQG------ENLSNMVAILGSID 374 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 4/168 (2%) Query: 4 RITIDPVTR-IEGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I I P ++ + +V+ + G RG+E+ + R +++RIC Sbjct: 5 TIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERIC 64 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ TH+ + ++A E + +P A YIR+++ H H++ A + + Sbjct: 65 GICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLG--VAGHEIGFDT 122 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFAN 169 L ++ ++ N ++ + Q+ + N Sbjct: 123 LLMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRN 170 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 51/372 (13%), Positives = 94/372 (25%), Gaps = 56/372 (15%) Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 YLQ L + + + G+ P R YI+S + Sbjct: 51 RSYLQCLYLLERICGICSHTHSTAYIQAVEEIAGLTIPP-----------RANYIRSLVG 99 Query: 249 KLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 +L + + A G L + GG N Sbjct: 100 ELERIHSHLLWLGVAGHE----------IGFDTLLMYSWRDRELVMDILAELGGNRVNYG 149 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSP 368 +++ + I+ I+ S ++ T P Y + Sbjct: 150 INTLGGVRRDITPEQIEMIRNSVNT--LEERTKYYIEVATEEPTLAARLAGVGYLSHEDA 207 Query: 369 TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGR 428 VGP R + + GR + R Sbjct: 208 LLLS---AVGPTLRASNVDRDIRRDDPYAAYGSLDF-------RVITDDHCDVYGRTLVR 257 Query: 429 TVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 E +++ + L G+ + IPA + EAPRG H++ Sbjct: 258 VGELMESFRMIRQILNELPE----GEVSVKAPRKIPA---GEACSRYEAPRGECFHYIRA 310 Query: 489 KD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCM 547 + + ++ + + +AD V + + DPC Sbjct: 311 NGTDKPERVKVRAST---------FANIQAVAKMMENNNLAD------VPIIVAAIDPCF 355 Query: 548 ACAVHVVDADGN 559 +CA ++ G Sbjct: 356 SCADRCLELLGE 367 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +++ V G + RG+E+I +NR V R+ V ++ L Sbjct: 35 HGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRMDYVAAVSNGLGY 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E +++ P AQ++R I+ + H+V ALD +T + Sbjct: 95 CEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGT-HALDIGALTPLFYTFRDREEV 153 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + ++ I + Sbjct: 154 LKIFEKYCGARLTTHAFRIGGCIYEAYEG 182 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 15/140 (10%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP+ R++ + V + + T R + R + Sbjct: 232 TGPVLRAAGVKWDLRKAQPYAAYDQVDF-------DVPTGENGDTFDRYMVRMQEMRQSI 284 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG--IIS 494 IL+ L T P + + +EAP+G L +++ + DG Sbjct: 285 RILRQAVEKLPAGP-----TMAKVPKVLKPPVGRIYHSIEAPKGELGYFI-VSDGSLQPY 338 Query: 495 NYQAVVPSTWNSGPRNFNDD 514 + PS N + Sbjct: 339 RVRVRPPSFVNLQALDKMVR 358 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 21/266 (7%) Query: 17 LRIDCEIENGVVSKAWASGTMWRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSVRA 75 R+ CE E ++ + RG+E++ D + +R+CG+C H+ A Sbjct: 192 FRLFCEGE-EIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYCMA 250 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLK 135 E A I++P A+YIR+I++ H H++ A ++ + L ++ Sbjct: 251 VEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGL--AGHYLGFDTVLMQSWRIREPIMW 308 Query: 136 GVSTWHLNSPEEFTKVQNKIKDLVASG-----------------QLGIFANGYWGHPAMK 178 V N + ++ + S +L G Sbjct: 309 LVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVAGDESLKMRM 368 Query: 179 LPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLE 238 + V A + + A+ V P+ + + + L Sbjct: 369 VKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGDIWARTLV 428 Query: 239 RLMYIKSFIDKLSDFVEQVYKVDTAV 264 R+ ++S +D + + ++ + + Sbjct: 429 RVDEVRSSVDLIKQMITKLPEGEIMA 454 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 30/191 (15%) Query: 371 YGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTV 430 VGP A R + + R + R Sbjct: 379 ARGICVVGPTARASGVHIDARADYPYAAFPDLDF-------KPSFHEGGDIWARTLVRVD 431 Query: 431 HCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-K 489 D+++ + L P +G G EAPRG H++ K Sbjct: 432 EVRSSVDLIKQMITKLPEGEIMAGF-------GPIPAWREGYGIAEAPRGECVHYVQTGK 484 Query: 490 DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 D ++ + + L G + D I S DPC +C Sbjct: 485 DNRPYRWRVRAAT---------YPQLQAVPLMLKGMSIGD------FPIIIGSIDPCFSC 529 Query: 550 AVHVVDADGNE 560 V+ D Sbjct: 530 TERVLTVDTKS 540 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 10/155 (6%) Query: 5 ITIDPVTRIE---GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRI 60 + I P+ GH R+ + EN ++ + + RGME++ + R + + R+ Sbjct: 182 VPIGPLHVTSDEPGHFRLFVDGEN-IIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 240 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALD-- 115 CG+C H+ + + E+A+ I VP AQ IR I+L H H+++ + D Sbjct: 241 CGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSG 300 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTK 150 ++ + A + T+ LN + Sbjct: 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRR 335 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 123/464 (26%), Gaps = 57/464 (12%) Query: 111 LSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG 170 L D D L + + + + EF K+ V + Sbjct: 135 LVLPD--DWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSD 192 Query: 171 YWGHPAMKLPPE------VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVA 224 GH + + E L V ++ L R V L + I A Sbjct: 193 EPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 Query: 225 NPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL-TRGKGAVNYL 283 + +G+ ER I++ + ++ + + A + + + Sbjct: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSM 312 Query: 284 SVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQA 343 + E T ++ L G I L T + + + +QE D Sbjct: 313 KMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELV------DVLLST 366 Query: 344 PWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVA 403 P + + VGP+ R Sbjct: 367 PNMEQRTVGIGRLDPEIARDFSN----------VGPMVRASGHARDTRADHPFVGY---- 412 Query: 404 IYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNI 463 L + Q + R+ R +++ L + T++ Sbjct: 413 ---GLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRF 469 Query: 464 PATGEFKGVGFLEAPRGMLSHW-MVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSL 522 +GF EAPRG HW M + + ++ + N L Sbjct: 470 -------ALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANW---------PTLRYML 513 Query: 523 VGTPVADPNKPLEVVRTIHSFDPCMACA--VHVVDADGNEVVSV 564 G V+D I S DPC +C + VVD + V Sbjct: 514 RGNTVSD------APLIIGSLDPCYSCTDRMTVVDVRKKKSKVV 551 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 4/114 (3%) Query: 3 QRITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++ + PV IE GH R E+ V++ RG+E+ + + DA ++ +R Sbjct: 171 YQVPVGPVHAGIIEPGHFRFFTFGED-VINLQAQLFYTHRGIEKTAEGKHFLDAVLVAER 229 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 +CGVC+ +HA+S +A ES I+ P+ A+YIR ++L ++H+ + A Sbjct: 230 VCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMCA 283 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 50/174 (28%), Gaps = 30/174 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP A R V+ + + R+I R + Sbjct: 378 TGPAARASGVNRDLRREFPYAAYRRVSF-------QVPIQHEGDVYCRLIQRIEESEQSF 430 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISN 495 DI++ ++ L + T + VG+ E+ RG HW++ D + Sbjct: 431 DIIRQVFNNLPAGELQAPITYLQPYH-------TAVGYTESARGANVHWVMSGPDNTVYR 483 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 Y S N L G V D + SF+ C AC Sbjct: 484 YMVRSASHCNW---------PVVPLCLPGNIVPDFPLINK------SFELCYAC 522 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 5/173 (2%) Query: 1 MSQR--ITIDPVTRIEGH-LRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMI 56 M+QR I I P I + D E+ V A + + RG+E +V+ RD D + Sbjct: 1 MAQRNIIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHV 60 Query: 57 VQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDW 116 RICG+C+ H+L +A E ++I+VP A Y+R+I H HI +A + Sbjct: 61 ADRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGA-AADAF 119 Query: 117 VDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFAN 169 + +QA + + T KV +D+ GI Sbjct: 120 GFESLFMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNR 172 Score = 81.8 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 101/332 (30%), Gaps = 55/332 (16%) Query: 224 ANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYL 283 + + + +R +Y++S +LS ++ + A A + + Sbjct: 76 YCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGFESLFMQAMRLRE-- 133 Query: 284 SVPEFPTDSKNGSFLF----PGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE 339 V + ++ G + GG + D S + I + +KG E + + D Sbjct: 134 PVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTT--LKGALEELSNVFLNDY 191 Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 + Q G S + Y+ VGP+A R Sbjct: 192 SVQHRLAGV-----GFLSREDAYTLGC----------VGPMARASGLAIDMRAL------ 230 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV 459 K V R R D+++ + V Sbjct: 231 --GYAAYKYLEVEPVVESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGP--------V 280 Query: 460 KPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISNYQAVVPSTWNSGPRNFNDDVGPY 518 + T + + +E PRG + H++ + ++ VP+ N + Sbjct: 281 DVKVTGTPDGEYYSRVEQPRGEVIHYVKGNGARFLQRFRVRVPTFSN---------IPAM 331 Query: 519 EQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 + L G+ +AD V I + DPC++C Sbjct: 332 VKVLKGSQLAD------VPNIILTLDPCISCT 357 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 16/250 (6%) Query: 19 IDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAE 77 ++ + KA+ G + RG+E+ ++R +V+RICG+C+T+HA V A E Sbjct: 170 FSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVERICGICSTSHAWCFVEAVE 229 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGV 137 LN++VP A Y+R ++ H H + + W + ++ + Sbjct: 230 RLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGY--WTGFETMFMWVWGLRETIMDLL 287 Query: 138 STWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALEC 197 N + ++ V L + + LE Sbjct: 288 EEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETF-------------RREFESLLES 334 Query: 198 QRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 + +++ G + + A A G R + ++ V Sbjct: 335 LSYSEEIISRTKGIGRYSLDDARKYCAVGPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTS 394 Query: 258 YKVDTAVIAA 267 + D + Sbjct: 395 NEGDVYNLIR 404 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 92/331 (27%), Gaps = 43/331 (12%) Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTD 291 L + R Y+++ + +L + + G + Sbjct: 232 LNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWG----------LRE 281 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIP 351 + G + + + + L++ + E + + E+ + Sbjct: 282 TIMDLLEEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEI 341 Query: 352 AYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGN 411 G+YS + + VGP V+ AAG ++ A Sbjct: 342 -ISRTKGIGRYSLDDARKY----CAVGP-----VRRAAGDPFDVRRIEPYGAY--PEVEF 389 Query: 412 TLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKG 471 + + I R E I+Q + + KP + E + Sbjct: 390 EVPTSNEGDVYNLIRVRVKEVVESASIIQQLVEKMP-----SGNPVPPKPFMGTVPEGEA 444 Query: 472 VGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPN 531 +EAPRG L +++ + T N P + + + Sbjct: 445 YSRIEAPRGELFYYVKANN------------THN--PYRVKVRTPTLANIQLAAKILEGQ 490 Query: 532 KPLEVVRTIHSFDPCMAC--AVHVVDADGNE 560 + + S DPC +C V ++D G Sbjct: 491 TLSDFPVVVTSIDPCFSCMDRVTIIDLSGKR 521 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ V + G + RG E++ ++ + + R+ +C ++ L+ Sbjct: 32 HGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLCPPSNNLAF 91 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E L I+ P+ AQYIR ++ H++ L D +T+ L + Sbjct: 92 ALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM-DLGAMTALLYVMREREMI 150 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 M F +V +DL Sbjct: 151 MDLLEMITGARMHTSFCRVGGVREDLPDG 179 Score = 53.3 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 52/183 (28%), Gaps = 40/183 (21%) Query: 386 KLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSA 445 L A + +E IY +L + R R E I++ Sbjct: 232 NLRASGVDWDIRRDEPYEIYDRL-DFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQ 290 Query: 446 LITNIGKGDHTTFVKPNIP---------------------ATGEFKGVGFLEAPRGMLSH 484 + + D T P + + +EAP+G L Sbjct: 291 MPEGPFQIDMPTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELG- 349 Query: 485 WMVIKDG--IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 + +I DG + PS N Q+L G V + +++ + S Sbjct: 350 FYIISDGSPKPFRMKVRAPSFVNL-------------QALFG--VTNARYLADMIAVLGS 394 Query: 543 FDP 545 DP Sbjct: 395 LDP 397 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 11/251 (4%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G L++ CE E V G + RG+E++ +++ A + R+ + + T+ + Sbjct: 26 HGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKTYPGAMTLTDRLDYISSMTNNIGY 85 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E + I+ P A++IR ++ H++ ALD +T L A + Sbjct: 86 CLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWL-ATHALDIGAMTVFLYAFREREQI 144 Query: 133 ML---KGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 + K S V+ IK+ V + N I +A Sbjct: 145 LQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIRVDEYETLLTENRIWIA 204 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + ++ L G G I+ + I+ + + Sbjct: 205 RTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEIDFEVPLGEKGDTYDRY 264 Query: 244 KSFIDKLSDFV 254 I ++ V Sbjct: 265 LCRIREMRQSV 275 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 44/176 (25%), Gaps = 34/176 (19%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R+ + L T R + R + Sbjct: 223 TGPALRGSGVYYDIRKQIPYDAYSEIDFEVPLGEKG-------DTYDRYLCRIREMRQSV 275 Query: 437 DILQNQYSALITNIGKGDHT------------------------TFVKPNIPATGEFKGV 472 I++ + D + F + + + Sbjct: 276 LIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKIEPGDSLWNGFIAFSEEKQEIMPKGEIY 335 Query: 473 GFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLVGT 525 +EAP+G L ++V G + PS + P+ + +++GT Sbjct: 336 SAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFIHISAIPKLCEGHLLADVIAIIGT 391 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 11/217 (5%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNR-DPRDAWMIVQRIC 61 + + P + + ++ + A + + RGME++ ++R + +RIC Sbjct: 161 VPLGPYHPTLHEPEYFELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERIC 220 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---QLSALD--W 116 G+C TH+ + +A E A NI VP A+YIR I+L H H++ F L D + Sbjct: 221 GICGCTHSTAYCQAVEDATNIYVPERARYIRTIMLEVERLHSHLLWFGVACHLLGFDSGF 280 Query: 117 VDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPA 176 + + A + A + T+ +N V+ I + L + Sbjct: 281 MHLWRAREYIMDIAELITGNRKTYGINLIG---GVRRDIPEEKKRKVLELLDLAEKDSRE 337 Query: 177 MKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTP 213 + + R + ++G Sbjct: 338 ILDNVVKMGELKERMENVGVLPKKKGREIGVVGPVAR 374 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 93/345 (26%), Gaps = 51/345 (14%) Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNY 282 D + ER YI++ + ++ + A + A Y Sbjct: 230 AYCQAVEDATNIYVPERARYIRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREY 289 Query: 283 LSVPEFPTDSKNGSFLFP--GGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEA 340 + ++ GG + R + D +E + E Sbjct: 290 IMDIAELITGNRKTYGINLIGGVRRDIPEEKKRKVLELLDLAEKDS-REILDNVVKMGEL 348 Query: 341 PQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNE 400 + +P G VGP+A R Sbjct: 349 KERMENVGVLPKKKGREIGV----------------VGPVARASGIDTDVRRDHPYAAYG 392 Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 + + V + L R + R + +++ + + Sbjct: 393 DLDFE-------VPVYKGEDVLSRFLVRYDETFQSFSMIRQALDNMPEG-------ELIN 438 Query: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 + G G+G EAPRG H ++ + + + + +++ Sbjct: 439 EDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRAST---------YNNLPAVP 489 Query: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV--VDADGNEVV 562 L G +AD I S DPC +C HV +D++ V+ Sbjct: 490 VMLRGNDIADAPI------IIASIDPCFSCTDHVSIIDSENGRVL 528 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 23/277 (8%) Query: 2 SQRITIDPVTR-IEGHLRIDCEIENGVVSKAWASGT-MWRGMEEIVK--NRDPRDAWMIV 57 QRI I P + + +E V +G + RG+E++ + + + + Sbjct: 166 GQRIPIGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLA 225 Query: 58 QRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWV 117 +RICG+C H++S + E A IDVP A+YIR+IIL H H++ + L + Sbjct: 226 ERICGICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHL--L 283 Query: 118 DITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFAN----GYWG 173 + +++ + + ++ + ++ N Sbjct: 284 GYDAGFMHTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSE 343 Query: 174 HPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKT-------------PHIQNLAV 220 + V RD R ++++G P+ V Sbjct: 344 FKHLSDLITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDV 403 Query: 221 GGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 N L R+ + I L ++++ Sbjct: 404 YFKVPVYNEGDNLARLLVRIDEVFESIYILEQLIDKL 440 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 102/367 (27%), Gaps = 56/367 (15%) Query: 201 ANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKV 260 A R+ + G ++V + ER YI+S I ++ + + Sbjct: 225 AERICGICGFVHSVSYTMSV--------ERAAKIDVPERAEYIRSIILEIERLHSHLLWI 276 Query: 261 DTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFP--GGYIENADLSSYRPITSH 318 Y + V ++ GG ++ ++ + + Sbjct: 277 GVVCHLLGYDAGFMHTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNT 336 Query: 319 SDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVG 378 + I+ KH I + + + S K VG Sbjct: 337 IE-----YIRSEFKHLS------------DLITSISQIVKRASGTGILSRDDARKLSVVG 379 Query: 379 PLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDI 438 P+A R V + V L R++ R E I Sbjct: 380 PVARGSGLDRDVRRDYPYAAYRDVYF-------KVPVYNEGDNLARLLVRIDEVFESIYI 432 Query: 439 LQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQA 498 L+ L + + G+G +EAPRG + H + G ++ Sbjct: 433 LEQLIDKLPGGPIMAE-------KLEVPEGVIGIGNVEAPRGEVIHVTITGHGRPYRWRV 485 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADG 558 P+ N + + L P+AD TI S DPC +C +V D Sbjct: 486 RAPTYQN---------IPALKIMLRDAPLAD------APLTIASIDPCFSCTDRIVIVDL 530 Query: 559 NEVVSVK 565 K Sbjct: 531 RSNRRFK 537 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 121 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LRI E+E +++KA G + RG E+I +N R+ + + ++ Sbjct: 54 HGVLRIQMELEGEILTKADPIIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNMAY 113 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E + VP Q IR I H++ LD T + + + Sbjct: 114 VIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAF-GLDVGAWTVLVLSLNQREFL 172 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 +T++ +D+ Sbjct: 173 YNLFEDLTGARFTTSYTRIGGVTRDVPPG 201 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 3/152 (1%) Query: 19 IDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAAE 77 +E+ VV KA G R + ++++ RD + +R+CG+C HALS A E Sbjct: 129 FKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVE 188 Query: 78 SALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGV 137 + + VP A IR +I H++ L D V + L ++ + Sbjct: 189 NIGQVTVPKRADIIRTMICEMERIQSHLMAIGILG--DLVGYKTMLMQFLRIREDIQDSL 246 Query: 138 STWHLNSPEEFTKVQNKIKDLVASGQLGIFAN 169 ++ + Q Sbjct: 247 ELVSGQRVTHGLITLGGVRRDITPAQSNFVKR 278 Score = 79.9 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 31/189 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A + R++T E + + +L R+ + Sbjct: 321 VGPTARGSGQRLDVRKNTPYAYYENLDW-------DIVTDNGCDSLARVEVKMREALVSI 373 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI--IS 494 I++ L T + P + +G E PRG L + + +G Sbjct: 374 SIVEQCLEKLSTVPPEIITKLEELP------CAEALGKTEPPRGELLYHVA-SNGTNTPE 426 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 + VP+ + + + + + +V + S DPC +C V Sbjct: 427 FVRIRVPT---------------FMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVT 471 Query: 555 DADGNEVVS 563 ++V Sbjct: 472 VHKDAKIVV 480 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 79/254 (31%), Gaps = 11/254 (4%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +E ++ G + RG+E+I +++ R V ++ L Sbjct: 38 HGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKRYAQFTPWTDRTDYVAAPSNNLGY 97 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E L I+ P AQY R I+ H+V ALD ++ +L + Sbjct: 98 VLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGT-HALDIGALSMSLYCFRERELI 156 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ---LGIFANGYWGHPAMKLPPEVNLIAVA 189 + ++ + + A + N I +A Sbjct: 157 LDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDFLKVFPQRQREYEDLLSANPIWLA 216 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + D L G G ++ + + I+ + + Sbjct: 217 RTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQPYLLYDRIDFEVPLGTQGDVYDRY 276 Query: 244 KSFIDKLSDFVEQV 257 ++++ ++ + Sbjct: 277 LVRMEEMRQSLKII 290 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 110/302 (36%), Gaps = 22/302 (7%) Query: 1 MSQR---ITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWM 55 M++ + I P+ ++ +R++ E+E + K G RG+E + R+ Sbjct: 1 MAKTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLY 60 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 + +RICG+C+ +H + V +E AL I+ P AQYIR II H HI+ ++ Sbjct: 61 LSERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAH-- 118 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG---YW 172 + S L ++L + N + ++ + + + + YW Sbjct: 119 EIGFDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYW 178 Query: 173 GHPAMKLPPEVN-------LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVAN 225 ++ VA + + + + A G I+ Sbjct: 179 EFTEHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYA 238 Query: 226 PINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK--GAVNYL 283 I++ V+ + + + + V + I + + L GK NY+ Sbjct: 239 DIDVK--AVVPQDIVGEARGDAYDV-TMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYI 295 Query: 284 SV 285 ++ Sbjct: 296 AL 297 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 111/383 (28%), Gaps = 46/383 (12%) Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 + +Q L + ++ H +G + LG+ R YI++ I Sbjct: 53 RNAIQTLYLSERICGICSI-----SHPYAFVIG------SEKALGIEAPPRAQYIRTIIA 101 Query: 249 KLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 +L + + G + L + G N Sbjct: 102 ELERIHSHILWLGVIAHE----------IGFDSLLFWTWKGREKVLDILEAITGNRINYS 151 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSP 368 + + E I+ +++ + W E + E G K Sbjct: 152 MYMIGGVRRDLKESHIRVLKDMITYYW---EFTEHMKEVFLSDPVYKARTRGVAQVSKDV 208 Query: 369 TFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGR 428 VGP A R+ + + + + + A+ + R Sbjct: 209 ALKLN--LVGPTARAAGLRMDIRQDIPYDAYADIDVKAVVPQDIVGEARG-DAYDVTMVR 265 Query: 429 TVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI 488 + DI++ L N E +G+G EAPRG + H+ Sbjct: 266 IYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKIKKTEGEGIGAHEAPRGEVVHYFRY 325 Query: 489 KDGI--ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPC 546 + ++ + PS +++ + L+G VAD + + DPC Sbjct: 326 DGTRDGPAVWKVIAPS---------YNNINSWGYCLLGAEVAD------IPVVVAYIDPC 370 Query: 547 MACA--VHVVDADGNEVVSVKVL 567 M C V VV +++ +L Sbjct: 371 MCCNDRVAVVKDSTGKILDYSIL 393 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 78/253 (30%), Gaps = 9/253 (3%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ + +A G + R E++ + + P + R+ + + Sbjct: 58 HGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMAEVKTPAQFMPNMGRVDYLHALAWNWAY 117 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF--YQLSALDWVDITSALQADPTKA 130 V A E I++P A+Y+R I + H++ + Y L + I A Sbjct: 118 VGAVEKLAGIEIPERAEYLRVITCELNRISSHLLWWGAYLLDLGAFTPIMYAFDDREMLL 177 Query: 131 SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAH 190 + + S F V G + P N+I Sbjct: 178 DLLQLMTGSRLTYSSFRFGGVYTDASPAFVQGVRQFIPHLRSRLPMYTALVTENIILRRR 237 Query: 191 YLQALECQRD------ANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 + +D A+ VA G ++ V + + + + Sbjct: 238 IEEVGVIPQDMVTRYGASGPVARGSGIAYDVRRAEPYSVYDRFDYEIPVRHEECSMARYM 297 Query: 245 SFIDKLSDFVEQV 257 + ++ + V Sbjct: 298 VRMAEIEQSLRIV 310 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 21/169 (12%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP+A R + + + + + R + R + Sbjct: 256 GPVARGSGIAYDVRRAEPYSVYDRFDYEIPVRHEECS-------MARYMVRMAEIEQSLR 308 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISNY 496 I++ L +PA + +E RG + W+ G Sbjct: 309 IVEQAIENLPDGEHMHPKAPKPSFKLPA---GESYFAVEGARGKIGVWIASDGGKTPYRV 365 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP-NKPLEVVRTIHSFD 544 + P ++ + + GT +AD + I D Sbjct: 366 KLRAP---------GFSNLALFAECARGTLLADAVAILGSLDMVIPEID 405 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 20/292 (6%) Query: 1 MSQR---ITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWM 55 M + I I P+ ++ +R++ E+E + + G RG+E + R+ Sbjct: 1 MPKTAYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLY 60 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD 115 + +RICG+C+ +H + V AE AL I+ P AQYIR II H HI+ ++ Sbjct: 61 LSERICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAH-- 118 Query: 116 WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANG---YW 172 + S L ++L + N + ++ + + + YW Sbjct: 119 EMGFDSLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYW 178 Query: 173 GHPAMKLPP-------EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVAN 225 + VA + + + + VA G I+ Sbjct: 179 KFTEQMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYA 238 Query: 226 PINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK 277 I++ V+ + + K + V + I + + L GK Sbjct: 239 DIDVR--AVVPQDIVGEAKGDAYDI-TMVRIYEIEQSLDIIEYCVDNLPEGK 287 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 108/379 (28%), Gaps = 47/379 (12%) Query: 189 AHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFID 248 + +Q L + ++ H V LG+ R YI+ I Sbjct: 53 RNAIQTLYLSERICGICSI-----SHPYAFVV------TAEKALGIEAPPRAQYIRPIIA 101 Query: 249 KLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENAD 308 +L + + + L + G N Sbjct: 102 ELERIHSHILWLGVIAHEMGFDSLLFWTWK----------GREKVLDLLELLTGNRINYS 151 Query: 309 LSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGW-SDDGKYSWVKS 367 + + E IK I+++ + W E + + P Y + S + Sbjct: 152 VYMIGGVRRDLKESHIKAIKDAITYYWKFTEQMKEII--LSDPVYKARTRGVAQLSKEMA 209 Query: 368 PTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIG 427 VGP+A R+ + + + + + A+ + Sbjct: 210 LKLN----VVGPVARAAGIRMDIRQDMPYDAYADIDVRAVVPQDIVGEAKG-DAYDITMV 264 Query: 428 RTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMV 487 R + DI++ L + + +G EAPRG + H++ Sbjct: 265 RIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAKIRRTKGEAIGAHEAPRGEVVHYLK 324 Query: 488 IKDGI--ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDP 545 DG S ++ + PS +++ + L+G VAD + + DP Sbjct: 325 F-DGRDGPSVWKVIAPS---------YNNINSWAPLLLGAEVAD------IPIVVAYIDP 368 Query: 546 CMACAVHVVDADGNEVVSV 564 CM C V E + Sbjct: 369 CMCCNDRVALLKTPEGKVL 387 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G R+ E++ + KA G + RG E++ + R+ + T+ Sbjct: 22 HGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFLYTQFIPYTDRLDYMNAMTNNYVY 81 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 + E L+ +VP A+Y+R I + + H+V + LD ++ L A + + Sbjct: 82 CQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTY-LLDIGAMSPFLYAFRDRETI 140 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + + + ++ D Sbjct: 141 LDRLNEISGARMTFNYHRIGGVKWDAPEG 169 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 27/169 (15%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GPLA R++ + + + V Q R R E Sbjct: 220 GPLARGSGVEVDVRKTEPYSVYDH-------FDFDVPVEQEGDVYARYKVRIREMHESLK 272 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQ 497 I++ L + P E + EA +G + I +G Y+ Sbjct: 273 IIEQACKNLPEGDIIHKKGKKIMMIKPP--EGEVYTRAEASKGEIG-VYAISNGKNKPYR 329 Query: 498 A--VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 PS N + L+G + + +V S D Sbjct: 330 VKLRRPSFVNVS---------ILQDMLIGESIQN------LVAIFGSLD 363 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 77/254 (30%), Gaps = 11/254 (4%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +++ V K G + G E+ ++R + R + H L+ Sbjct: 41 HGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGVTYAPRTDYLHCFGHELAY 100 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V + E + VP A IR I+ H H+V LD +T A K S Sbjct: 101 VLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGT-GLLDLGALTPFFYAFREKESC 159 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVA---SGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 + + F +V +D+ G N I + Sbjct: 160 VDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERGVDEYTNLFANNPIFLD 219 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 D + L G G ++ + + + + + L Sbjct: 220 RARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAYDFNVISSTDGDSLARF 279 Query: 244 KSFIDKLSDFVEQV 257 + + S+ ++ + Sbjct: 280 TMRLLEFSESIKII 293 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 52/190 (27%), Gaps = 43/190 (22%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R++ E + + +L R R + E Sbjct: 238 TGPNLRASGVPLDVRKAHPYCGYEAYDFN-------VISSTDGDSLARFTMRLLEFSESI 290 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPA--------------------TGEFKGVGFLE 476 I++ + L + K + P + +E Sbjct: 291 KIIRQALARLKPGLIKDPNRKISLPPRHELETSMEAVIHHFKLVTEGFHPPTGEVYVPVE 350 Query: 477 APRGMLSHWMVIKDGII-SNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLE 535 RG + +++V G + + PS N + E + VG AD Sbjct: 351 GARGEVGYYIVSDGGSVPYRVKIRAPSFVN---------LQALEYACVGAQFAD------ 395 Query: 536 VVRTIHSFDP 545 ++ + + DP Sbjct: 396 LITILATIDP 405 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 80/255 (31%), Gaps = 12/255 (4%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ + + G + R E+I +NR + R+ + Sbjct: 49 HGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDYFANMHNEHGY 108 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E L +++P A+YIR ++ H+ L L+ T L A + Sbjct: 109 CLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFL-LLELGAFTPILYAFRERERI 167 Query: 133 MLKGVSTWHLNSPEEFTKVQ----NKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 + + ++ + D+ + P E N I + Sbjct: 168 QNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFIDLIEGNEIFI 227 Query: 189 AHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 ++ + L G G ++ V ++ + + + Sbjct: 228 ERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVVTDTAGDVEAS 287 Query: 243 IKSFIDKLSDFVEQV 257 + I ++ + ++ + Sbjct: 288 YRVRIKEVYESIKII 302 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 31/130 (23%), Gaps = 13/130 (10%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R + + + R E Sbjct: 247 TGPPLRCTGVAFDVRRDYPYSVYPELDFE-------VVTDTAGDVEASYRVRIKEVYESI 299 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGML-SHWMVIKDGIISN 495 I++ + GD V+P E +G G +E PRG H + Sbjct: 300 KIIRQCLEKMPEGEVMGDVGRRVRPP-----EGEGFGRVEGPRGEFAVHVVSDGSDTPYR 354 Query: 496 YQAVVPSTWN 505 PS N Sbjct: 355 VHYRDPSFVN 364 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 104/299 (34%), Gaps = 24/299 (8%) Query: 1 MSQRITIDPVTRIE----GHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNR-DPRDAW 54 M +I + P + E +N V++ G + RG+E+ R + Sbjct: 1 MGNKIIV-PFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLP 59 Query: 55 MIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ---- 110 +V R+CG+C+ THA + E L I+ Y+R +++ H H++ Sbjct: 60 YLVARVCGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEV 119 Query: 111 -----LSAL------DWVDITSALQADPTKAS-EMLKGVSTWHLNSPEEFTKVQNKIKDL 158 L D +DI + + + +++ GV+ E+F + + Sbjct: 120 VGYENLFMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKA 179 Query: 159 VASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL 218 + F N Y K ++ + A R A+ + + ++ Sbjct: 180 NTEKLIEFFENDYTFALKTKGVGTISKEMAEKFNAAGPIAR-ASGLETDARAEYDYLPFE 238 Query: 219 AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK 277 VG + N+ R I + I+ + ++ + + + V P+ T + Sbjct: 239 EVGYKLQTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVKVKGRPDGETFVR 297 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 40/330 (12%), Positives = 81/330 (24%), Gaps = 46/330 (13%) Query: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVN 281 G LG+ +++ Y++ + +L + Y + Sbjct: 75 GAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYENLFMQTFRY-- 132 Query: 282 YLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAP 341 + G D + D+ +E + Sbjct: 133 --------REDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLK-ANTEK 183 Query: 342 QAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEI 401 + G S + F GP+A R E Sbjct: 184 LIEFFENDYTFALKTKGVGTISKEMAEKFN----AAGPIARASGLETDARAEYDYLPFEE 239 Query: 402 VAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKP 461 V L+ R + R ++ N + + Sbjct: 240 VGY-------KLQTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRV-------- 284 Query: 462 NIPATGEFKGVGFLEAPRGMLSHWMVIKDGII-SNYQAVVPSTWNSGPRNFNDDVGPYEQ 520 + + + +EAPRG +++ + + VP+ ++ ++ Sbjct: 285 KVKGRPDGETFVRVEAPRGECFYYLKGNKTKVLERVRIRVPT---------YANIPVLKE 335 Query: 521 SLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 VG +D + SFDPCM+C Sbjct: 336 LFVGEKYSD------AQAIVLSFDPCMSCT 359 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 2/148 (1%) Query: 14 EGHLRIDCEIENG-VVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+ VV A G + G+E+ ++ + + ++ R+ + ++ + Sbjct: 48 HGVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKTYTKSIVLTDRMDYLAPMSNNMVY 107 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E + DVP AQ +R ++L + H+V ALD ++ A + Sbjct: 108 VAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGT-HALDLAAMSVFFYAMREREYI 166 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVA 160 + + +V D+ A Sbjct: 167 LDIFEMLTGARMMTSYFRVGGLAWDIPA 194 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 48/193 (24%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 G R++ E + V Q R R E Sbjct: 246 GANLRASGVDWDLRKTMPYSGYETY-------QFDVPVGQAGDIYDRYRCRVQEMRESVK 298 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGE-----------------------FKGVGF 474 I + + G+ T K P E Sbjct: 299 IARQAIERVKQMHGQPYVTENRKVAPPPKSEITYSMESLIHHFKLWTEGFRPPRGSAYAA 358 Query: 475 LEAPRGMLSHWMVIKDGIISNYQA--VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +E+PRG + ++ + DG ++ PS N +A Sbjct: 359 IESPRGEIGCYV-VSDGTPKPWRVHFRAPSFINLQAL---------------PHIAKGKL 402 Query: 533 PLEVVRTIHSFDP 545 ++V I S DP Sbjct: 403 MADLVALIASIDP 415 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 6/168 (3%) Query: 5 ITIDPVTR--IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I P IE + + +E+ VV K G R + ++++ RD + +RIC Sbjct: 147 IPYGPYHPAFIESNF-LKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERIC 205 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G C + HALS R+ E +ID+P A+ R ++ H++ + D + Sbjct: 206 GFCNSHHALSFARSVEDIASIDIPPKAKLARTLLCEMERIQSHLLAVGLIG--DLTGFRT 263 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFAN 169 L EM + I+ + Q N Sbjct: 264 MLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIRRDITPAQADFILN 311 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 31/190 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R+++ + E V + +L R+ + Sbjct: 354 VGPTARGSGLRIDVRKNSPYEAYEDVDW-------DIVTENGGDSLARMKVKMREVLMSM 406 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI--IS 494 I + + T P + + E PRG L + + +G Sbjct: 407 HIAEQCCEKIKTAPAGLATKVNELP------CGEAISKSEPPRGELLYHVA-SNGTNTPD 459 Query: 495 NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 + VP+ + + + G V D V I S DPC +C V Sbjct: 460 FVRIRVPTFLTAH---------IMLRLIQGGWVGD------VPAIIGSIDPCFSCTDRVA 504 Query: 555 DADGNEVVSV 564 NE V Sbjct: 505 IIKNNEKSVV 514 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 86/278 (30%), Gaps = 19/278 (6%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + P+ IE GH R E ++ RG+E++ + + + IV ++ Sbjct: 170 ILVGPIHAGIIEPGHFRFSLAGE-HILQLEIRHFWKHRGVEKLAEGKTAEEVLEIVPKVS 228 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH---DHIVHF-----YQLSA 113 G + H L+ V+A E N ++P A+YIR + + + Y A Sbjct: 229 GDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGA 288 Query: 114 LD-WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQ-NKIKDLVASGQLGIFANGY 171 ++ ++ + + + + N I D + Sbjct: 289 QGMFILKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKK 348 Query: 172 WGHPAMKLPPEVNLIAVAHY-----LQALECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 + + Y L + A+ + + + + P++ + + Sbjct: 349 IIFDSASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQT 408 Query: 227 INLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAV 264 RL I+ I + + + + + Sbjct: 409 FEEGDCFARLKCRLSDIEDSISIIKEVLSDLPDGEIFT 446 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 32/311 (10%) Query: 5 ITIDPV--TRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I I PV T +E H R+ IE+ ++ +A G +RG+E I++ P ++ ++IC Sbjct: 10 IAIGPVHPTMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G+C+ H +V E +I+VP A+YIR I+ H H++ F A + + + Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGH--AFEVLGFET 126 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA------------- 168 +++ + + + I+ + I A Sbjct: 127 MAFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLK 186 Query: 169 ------NGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGG 222 + V A L AL + + + + Sbjct: 187 KLLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEF 246 Query: 223 VANPINLDGLGVLNLERLMY-------IKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTR 275 + + R I+ + L + +++Y + + + Sbjct: 247 EEIVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNE 306 Query: 276 GKGAVNYLSVP 286 + Y S Sbjct: 307 AQRGQVYYSYG 317 Score = 95.3 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 28/185 (15%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP A + R+ Q + + + + + R+ R C E Sbjct: 220 GPTARGSGIHSDMRKMGQVPVYDNFEFEEIVFDDG-------DVFSRLAVRFYECFESVK 272 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNY 496 I++ L + + + + EA RG + + + ++G + Sbjct: 273 IIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYN-----EAQRGQVYYSYGLDENGRVRQV 327 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDA 556 + P+ N E L G V+D I S DPC C ++ Sbjct: 328 KIRTPTATNLAC---------MEAILPGHHVSD------AELIIASCDPCFTCTDRMIVV 372 Query: 557 DGNEV 561 N++ Sbjct: 373 KENKI 377 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 118 bits (294), Expect = 8e-25, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 74/254 (29%), Gaps = 11/254 (4%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +E V G + RG+E++ ++ R V ++ L Sbjct: 37 HGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHRYAQFVPWTDRTDYVAAPSNNLGY 96 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKA-- 130 V A E I P AQY R I+ H+V ALD ++ +L + Sbjct: 97 VLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGT-HALDIGALSVSLYTFRDRELI 155 Query: 131 -SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 K + E +I + + N I +A Sbjct: 156 LDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCRYFPKAIRQYEDLLTENPIWLA 215 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + D L G G ++ + + + + + + Sbjct: 216 RTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYLLYDRVEFEVPLGTHGDVYDRY 275 Query: 244 KSFIDKLSDFVEQV 257 I+++ + + Sbjct: 276 LVRIEEMRQALRII 289 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 53/404 (13%), Positives = 106/404 (26%), Gaps = 59/404 (14%) Query: 159 VASGQLGIFANGYWGHPAMKLPPEVNLIA-VAHYLQALECQRDANRVVALLGGKTPH--- 214 + + + N HP+ V L + +R V LG + Sbjct: 18 ITPTRRELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHRYAQF 77 Query: 215 -IQNLAVGGVANPIN--------LDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI 265 VA P N G+ ER Y + + +L+ + + T + Sbjct: 78 VPWTDRTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGTHAL 137 Query: 266 AAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIK 325 G +V+ + + + F G ++ + L + Sbjct: 138 --------DIGALSVSLYTFRD--RELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPE 187 Query: 326 GIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLV 385 ++E + Y +A + + T G V P G Sbjct: 188 MVREFCR---YFPKAIRQYEDLLTENPIWLARTKGV--GVIEPDVAINYGLTGACLRGSG 242 Query: 386 KLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSA 445 R++ L + V L R + R + I++ Sbjct: 243 VNYDVRKAMPYLLYDRVEFEVPLG-------THGDVYDRYLVRIEEMRQALRIIEQCLEQ 295 Query: 446 LITNIGK--GDHTTFVKPNIPATGEFKGVGFL--------EAPRGMLSH----------W 485 + T+ + + P+ + + P+G + H + Sbjct: 296 VPTDGPLMAYESPYVIPPHKTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGY 355 Query: 486 MVIKDG--IISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLVGT 525 ++ DG I + P N P + +L+GT Sbjct: 356 YIVSDGSPIPYRVRIRTPDFVNLQSLPYMAQGAMLADIVALIGT 399 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 3/159 (1%) Query: 5 ITIDPV-TRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 + I P T + G LR+ E++ + + G + R E++ + R+ Sbjct: 179 LNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNY 238 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 + + +A E L +++P AQ +R I+ DH + A+D +TS Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGT-GAMDLGALTSF 297 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + T++ +D Sbjct: 298 FYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEG 336 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 85/274 (31%), Gaps = 21/274 (7%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 + I P G L +E + K G + RG+E++ ++ + +R+ Sbjct: 202 VNIGPQHPSTHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNESLTYPQTLALTERLDY 261 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 + + + E A I+V QYIR I+ HI+ F L D ++ Sbjct: 262 LGAMQNRHALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLC-QDMGATSAF 320 Query: 123 LQADPTKA-----------SEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ------LG 165 L + ++ +T + ++K+ + + Sbjct: 321 LYGFRDREQILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYD 380 Query: 166 IFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVAN 225 IF N H ++ +N V + R A L P+ V Sbjct: 381 IFVNNVIAHNRLEGVGVLNKEQVISFGCTGGTGR-AAGWSNDLRKHQPYAAYDKVDFQEI 439 Query: 226 PINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYK 259 + R+ I+ + + ++ + + Sbjct: 440 TYTEGDSFARLMVRMKEIEESLKIIEQLIDGIPE 473 Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 65/262 (24%), Gaps = 37/262 (14%) Query: 225 NPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLS 284 G+ ER+ YI++ +D+ + + + +L Sbjct: 272 CMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHI-----LFFSCLCQDM----GATSAFL- 321 Query: 285 VPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKH-----SWYKDE 339 + F G + ++ + + ++ ++E + Y D Sbjct: 322 YGFRDREQILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYDI 381 Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 + + + S+ G R+ Sbjct: 382 FVNNVIAHNRLEGVGVLNKEQVISFGC----------TGGTGRAAGWSNDLRKHQPYAAY 431 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV 459 + V + + R++ R E I+ LI I +G T Sbjct: 432 DKVDFQE-------ITYTEGDSFARLMVRMKEIEESLKII----EQLIDGIPEGPFQTKT 480 Query: 460 KPNIPATGEFKGVGFLEAPRGM 481 KP I +E RG Sbjct: 481 KPIIKIPA-GTYYSAVEGSRGE 501 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 81/254 (31%), Gaps = 11/254 (4%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +++ +V G + R E+I + + D + R+ V + Sbjct: 19 HGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDYVAAMNMEIGY 78 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 + AAE L+++ P A++IR ++ + H+V LD +T + Sbjct: 79 LEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAF-GLDLGMLTPFFYCFKEREKI 137 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI---FANGYWGHPAMKLPPEVNLIAVA 189 + + + +D+ I + N I ++ Sbjct: 138 LKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIANLFVKNDIFLS 197 Query: 190 HYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 ++ + G G ++ V + +N D + L Sbjct: 198 RTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPVSFKGDNLARF 257 Query: 244 KSFIDKLSDFVEQV 257 I+++ V+ + Sbjct: 258 LVRIEEMRQSVKII 271 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 16/237 (6%) Query: 272 WLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESA 331 L G + E + F G + + S + + + I++ Sbjct: 118 GLDLGMLTPFFYCFKE--REKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFI 175 Query: 332 KHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGR 391 + K+ A G S + + GP+ R Sbjct: 176 TE-FPKELNMIANLFVKNDIFLSRTKGVGILSKEMAIDYG----VTGPMLRASGVEYDVR 230 Query: 392 ESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIG 451 ++ + + V + V+ L R + R + I+ L Sbjct: 231 KAEPYLVYDKVNF-------DIPVSFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAG-P 282 Query: 452 KGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISNYQAVVPSTWNSG 507 + I G+ + E+P+G ++V + P+ N Sbjct: 283 YFNQKAKKPLMIRLRGQGEVYARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLS 339 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 80/255 (31%), Gaps = 13/255 (5%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G+ + +E V KA G + RG E++++ R ++ RIC + L Sbjct: 16 HGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIPRICVPEPDINELCY 75 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E IDVP AQ+IR I+L +H+ F + + + + Sbjct: 76 ALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGP--IGLYTGSFWGTADRDR 133 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDL----VASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 +L V ++ + L P + N I Sbjct: 134 ILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDYEKLILKNRIVH 193 Query: 189 AHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 + R+ + + G G I+ + + ++ + + + Sbjct: 194 TRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPFSTDGDAFAR 253 Query: 243 IKSFIDKLSDFVEQV 257 + ++ ++ V Sbjct: 254 VYLKFREIFQSIKIV 268 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 86/255 (33%), Gaps = 11/255 (4%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ ++ KA G + RGME++ +N + R+ + ++ + Sbjct: 35 HGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAENMIYNEFMPTTDRMDYIASSANNYGF 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E + ++VP A+ IR ++L + H+ +ALD +T L A + Sbjct: 95 ALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWL-ATTALDIGAMTVFLFAFREREYL 153 Query: 133 MLKGVSTWHLNSPEEFTKVQN---KIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVA 189 M ++ I+D + + + N I + Sbjct: 154 MDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKTFLDKLPQNIKDYEDLLDTNRIWLM 213 Query: 190 HYLQALECQRDAN------RVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + ++ + G I+ + + + + Sbjct: 214 RMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEEPYELYDEVEFRVPYSDKGDNFARY 273 Query: 244 KSFIDKLSDFVEQVY 258 + +++++ + + +Y Sbjct: 274 RIYMEEMRESAKILY 288 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 25/238 (10%) Query: 15 GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 G++ ++ V G + RG E++++ R ++ RIC L+ Sbjct: 20 GNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVEDPDHIELTYT 79 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 A E I+ P A+Y+R I+ H++ + Sbjct: 80 HAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGP-----------------IA 122 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQ 193 + ++W + + EE K + + W P+ E L + Sbjct: 123 ARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPS--DFKEKTLKVLKVIKP 180 Query: 194 ALECQRDANRVVALLGGKTPHIQNLAVG-----GVANPINLDGLGVLNLERLMYIKSF 246 ++ RD + + + L G G P +L +++ ++ Sbjct: 181 LIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAY 238 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 18/171 (10%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R+ + + + + + R + R Sbjct: 216 TGPTLRGSGVKFDLRKVLKYDAYGEIDFE-------IPSGEYGDSYDRALVRLREMYISM 268 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGM-LSHWMVIKDGIISN 495 +I++ + T +G + + IPA +G+G +E+ RG L+H + G Sbjct: 269 EIIRQAVEKMPT---EGPYRYRLPATIPA---GEGIGRVESARGEFLAHILQRPPGARRY 322 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPC 546 + + P + + + + P+ I SFDPC Sbjct: 323 SKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADLPV----LIGSFDPC 369 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 16/254 (6%) Query: 16 HLRIDCEIENGVVS-KAWASGTMWRGMEEIVKN-RDPRDAWMIVQRICGVCTTTHALSSV 73 H R+ ++ V + + RG+E++ ++ D M+ +RICG+C H+L+ Sbjct: 187 HFRL--YVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLAFC 244 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ---------LSALDW-VDITSAL 123 +A E+ + VP A++IR I+L H H + L W + Sbjct: 245 QAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIREPIMW 304 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEV 183 A+ + G+ + ++ + + ++ + + Sbjct: 305 LAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNIMART 364 Query: 184 NLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + + +A E VA GG + + ++ + + + Sbjct: 365 SGVGMADKALCKEMG--LVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWGRV 422 Query: 244 KSFIDKLSDFVEQV 257 + ++ + + + Sbjct: 423 VVRMLEVFESINII 436 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 33/191 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R + V + GR++ R + E Sbjct: 381 VGPVARGGGVDIDARRDHPYAAYDRVDF-------KVITHNTADVWGRVVVRMLEVFESI 433 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHW-MVIKDGIISN 495 +I++ + + D TT + G +EAPRG H+ + D Sbjct: 434 NIIRQCFDKMPQGPLVADITTELP------AGRVGYTSIEAPRGESHHFAITGDDNRPRR 487 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP-LEVVRTIHSFDPCMACA--VH 552 ++A P+ N L G P ++ ++ ++ DPCM+C + Sbjct: 488 WRARAPTYQN----------------LQGIPAMIKDQRIADMQISLGGIDPCMSCTDRME 531 Query: 553 VVDADGNEVVS 563 +D S Sbjct: 532 TIDIRTGARKS 542 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 12/264 (4%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICG 62 + I P G +R +E + K A+ G + RG+E++ ++ + R+ Sbjct: 174 VNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNESLTYPQTLALTDRLDY 233 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 + + + E A+ I+V +YIR I+ H++ + L+ D +T+ Sbjct: 234 LGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAM-DLGALTAF 292 Query: 123 LQADPTKASEMLKGVSTWHLN---SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + + T + VQ + Sbjct: 293 FYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHD 352 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLGGKTP------HIQNLAVGGVANPINLDGLG 233 N+IA R+ GG ++ GV + ++ + Sbjct: 353 VFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFKEIV 412 Query: 234 VLNLERLMYIKSFIDKLSDFVEQV 257 + +D++ + + + Sbjct: 413 YTEGDSFARYMVRMDEIMESLNII 436 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 69/262 (26%), Gaps = 37/262 (14%) Query: 225 NPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLS 284 +G+ ER+ YI++ +D+L + + G + Sbjct: 244 CMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAM--------DLGALTAFF-- 293 Query: 285 VPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSW-----YKDE 339 + F G + ++ + + I +++ + Y D Sbjct: 294 YGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHDV 353 Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 + S + S+ G R+ + Sbjct: 354 FTGNVIARQRLKGVGVLSREDAISFGC----------TGGTGRASGWACDVRKRMPYGVY 403 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV 459 + V + V + R + R E +I+ LI NI +G + Sbjct: 404 DKVDFKE-------IVYTEGDSFARYMVRMDEIMESLNII----EQLIDNIPEGPIQEKM 452 Query: 460 KPNIPATGEFKGVGFLEAPRGM 481 KP I E +E RG Sbjct: 453 KPIIRVP-EGSYYTAVEGSRGE 473 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 1 MSQ---RITIDPVTRIEGH-LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWM 55 MS+ I I P+ + LRI ++ A G + RG+E+I++ + Sbjct: 1 MSENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIH 60 Query: 56 IVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 + +R+CG+C+ H ++ E I++P A+Y+R + H H++ Sbjct: 61 LAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLI 111 Score = 73.0 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 32/188 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP + +G + +L + YQ+L + + + R++ R E Sbjct: 215 VGP-----ICRGSGLPESDWRLRH--STYQELKFKPVWREEGDN-FARMMVRHEEIIESV 266 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISN 495 +++ G +K KG EAPRG +++ M I D GII Sbjct: 267 RLIREALEHYEECSGDIRVKAEIK-------GGKGEWRNEAPRGEVTYRMEITDGGIIKR 319 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH--V 553 P+ N + Y+ L P + V S DPC++C V Sbjct: 320 IMIRTPTVMN---------LEAYKYMLKTCPTV-----ADAVSAYTSIDPCVSCTERCIV 365 Query: 554 VDADGNEV 561 DG E+ Sbjct: 366 AVKDGKEI 373 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 18 RIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ ++ A G RG+E +++ A M+ ++ICG+C+ +H +SVR A Sbjct: 30 RVRFFVEDEIIKDAEITIGVNHRGIERVMEGLPVEKANMLTEKICGICSNSHTWNSVRTA 89 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 E L ++VP A YIR I+ H H+++ Sbjct: 90 EKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGH 123 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 25/182 (13%) Query: 383 MLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQ 442 + V R + + + +++ R E I++ Sbjct: 222 LAVSGPTLRATGVKRDLRTDMYEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQA 281 Query: 443 YSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPS 502 L + ++ + ++E PRG L H I+DG + + PS Sbjct: 282 IRDLPEGKITDRSWEMIDTDLIES-------YIEVPRGTLYHSYAIEDGRVRHCIIRTPS 334 Query: 503 TWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC---AVHVVDADGN 559 N +G + + + + D + DPC C A+ V D + N Sbjct: 335 MSN---------IGAMQYACIDNHITDGQL-----CIVQC-DPCFTCSDRAIEVYDTNYN 379 Query: 560 EV 561 ++ Sbjct: 380 KL 381 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 45/342 (13%), Positives = 107/342 (31%), Gaps = 27/342 (7%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 + + P GH+R+ +++ ++ G + RG+E+I ++R +V+R C Sbjct: 352 LVVGPQHPGSGHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIPLVERPCIT 411 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 + + V+A E AL I+V A+YIR I+ H+ LS ++ ++ Sbjct: 412 DFANYDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSI--FLGHSTGF 469 Query: 124 QADPTKASEMLKGVSTWHLNSPEEFTKVQNKIK----DLVASGQLGIFANGYWGHPAMKL 179 + + ++ V ++ D I + Sbjct: 470 MWAFGLREFVCEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEK 529 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLG-----GKTPHIQNLAVGGVANPINLDGLGV 234 N VA + + + ++G H L + ++ D + Sbjct: 530 MFVKNPTVVARLENVGILSKKDAKELGIVGPFLRASNVRHDWRLKGYEAYDCVDWDVVTA 589 Query: 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKN 294 + + +++++ ++ + + K L + EF + + Sbjct: 590 EEGDSYARLLVRVEEINQSIKIID--QLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEG 647 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWY 336 + + + ++ SWY Sbjct: 648 ARGTIYMSIVSDGESTTPYRFRI-------------VTPSWY 676 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 39/304 (12%) Query: 229 LDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEF 288 + LG+ ER YI++ + +L +Y I + G ++ Sbjct: 425 EEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGLREFVC---- 480 Query: 289 PTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGT 348 + G + + ++ ++E + E + + Sbjct: 481 ------EALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMF--V 532 Query: 349 TIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKL 408 P ++ K G VGP R + Sbjct: 533 KNPTVVARLENVGILSKKDAKELGI---VGPFLRASNVRHDWRLKGYEAYD--------C 581 Query: 409 TGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGE 468 + A+ + R++ R + I+ L + K D +P Sbjct: 582 VDWDVVTAEEGDSYARLLVRVEEINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPL--- 638 Query: 469 FKGVGFLEAPRGMLSHWMVIKDG---IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGT 525 + V +E RG + ++ DG ++ V PS +N + ++ G Sbjct: 639 GEFVSCVEGARGT-IYMSIVSDGESTTPYRFRIVTPSWYNLR---------GFVEACKGE 688 Query: 526 PVAD 529 +AD Sbjct: 689 RLAD 692 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 6/153 (3%) Query: 1 MSQR--ITIDPVTRIEGHLR-IDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMI 56 MS+ + + P + +++ V +G M RG+E+I + + + Sbjct: 1 MSKEFNLPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEESTFDQSIFV 60 Query: 57 VQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDW 116 V+RICG+C+ +H + + A E I+VP+ A+YIR++I H H++ A + Sbjct: 61 VERICGICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGL--AGHF 118 Query: 117 VDITSALQADPTKASEMLKGVSTWHLNSPEEFT 149 + + +L+ + N T Sbjct: 119 IGYDTLWMWAWKYREPVLEVIEMITGNRNHYGT 151 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 29/192 (15%) Query: 374 TVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCC 433 VGP A R+ +++ + V + + + R + Sbjct: 211 YCAVGPTARASGVAIDVRKDEPYAAYDLLDF-------GVVVREEGDIFAKTVVRILEVF 263 Query: 434 ELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-I 492 E +++ L K + + +G+G EAPRG + H++ Sbjct: 264 ESIKMIRQIIEKL----RKVKGPIYND--VKEIPAGEGIGRHEAPRGEVFHYIRTDGSNR 317 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVH 552 ++ PS N + Y+ S +G +V+ T+ S DPC C Sbjct: 318 PVRHKIRAPSYVN---------IPTYKASCIG------ENLADVLITLASVDPCYCCTER 362 Query: 553 VVDADGNEVVSV 564 V + + + Sbjct: 363 SVRLQTEKGMEI 374 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 104/341 (30%), Gaps = 19/341 (5%) Query: 7 IDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCT 65 I P GHLR ++ ++ G + R ME+I +NR + +R Sbjct: 412 IGPHHSGSGHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRLYIQNVPLTERPNISDP 471 Query: 66 TTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS-ALDWVDITSALQ 124 L VRA E+AL I+VP A+YIR I+ FY + ++ ++ Sbjct: 472 INMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIG---AFFYDMGIFPLFMGHSTGFM 528 Query: 125 ADPTKASEMLKGVSTWHLN----SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 +L+ + + S ++ I D V + + Sbjct: 529 YSFAIREMVLELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENI 588 Query: 181 PEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLGV 234 N + ++ + R+ ++G G ++ V + ++ + Sbjct: 589 FVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYDKLDWEATTG 648 Query: 235 LNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL---TRGKGAVNYLSVPEFPTD 291 + L I ++++ V ++ + + + Sbjct: 649 DAGDCLGRIFGRLEEMKQSV-EIVRQAVDAVQEMPRGGVISEEILGDYKEASDDIRGYLY 707 Query: 292 SKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAK 332 + G + P G + ++ + + + Sbjct: 708 NVYGDLVLPKGEWTSVTEAARGTVLYSIISDGESNVPYRVR 748 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/314 (13%), Positives = 84/314 (26%), Gaps = 45/314 (14%) Query: 214 HIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL 273 N+ +G V + LG+ ER YI++ + +LS Y + + + Sbjct: 470 DPINMNLGYV--RAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPLFMGHSTGF 527 Query: 274 TRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKH 333 + GS P + I + K Sbjct: 528 MYSFAIREMV---LELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIHKRLK- 583 Query: 334 SWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRES 393 Y++ P + G + ++ VGP R++ Sbjct: 584 -KYENIFVYNPV------LISRMKEVGVLTREEAIRCG----IVGPFLRASGVEYDVRKA 632 Query: 394 TQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG 453 ++ + + LGRI GR + +I++ A+ G Sbjct: 633 EPYEVYDKLDWEATTGDAG-------DCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGG 685 Query: 454 DHTTFVKPNIPATGE-----------------FKGVGFLEAPRGMLSHWMVIKDG---II 493 + + + + + EA RG + + + I DG + Sbjct: 686 VISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSI-ISDGESNVP 744 Query: 494 SNYQAVVPSTWNSG 507 + + P N Sbjct: 745 YRVRIITPCWMNLR 758 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 2/147 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ + + G + G E+ +++R R+ + + +H L+ Sbjct: 41 HGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRTYTQCITYTPRMDYLHSFSHDLAY 100 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 + E + VP AQ IR ++ H+V LD+ +T A + + Sbjct: 101 ALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGT-GLLDFGALTPFFYAFREREAV 159 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLV 159 + + ++ +DL Sbjct: 160 LDLFEWVSGQRFHHNYIRIGGLKEDLP 186 Score = 54.1 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 47/421 (11%), Positives = 109/421 (25%), Gaps = 58/421 (13%) Query: 154 KIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTP 213 I D + N HP+ + ++ Q L + Sbjct: 17 DIADAPELKSEVMTLNVGPQHPSTH--GVLRVVVDLSGEQILRLTPHIGYLHTGFEKNME 74 Query: 214 HIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWL 273 H ++ +L + ++ + Q +V ++ + Sbjct: 75 HRTYTQCITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLV 134 Query: 274 TRGKGAVNYLSVPEF-----PTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQ 328 G G +++ ++ F ++ F + G + + + + ++ Sbjct: 135 FLGTGLLDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVK 194 Query: 329 ESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLA 388 + + + +A + + I + + + V P G Sbjct: 195 KFIAQMPARIDEYEALFRESPI-----FYERARGVAVIPPEVAINLSLTGGSLRASGVNY 249 Query: 389 AGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALIT 448 R++ E + V R++ R + E I++ L Sbjct: 250 DVRKAYPYAGYETYDF-------DVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEA 302 Query: 449 NIGKGDHTTFVKPNIPA-----------------------TGEFKGVGFLEAPRGMLSHW 485 + ++P + E+ RG L ++ Sbjct: 303 LGPGPIRDPNPQISLPPRHLLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYY 362 Query: 486 MVIKDG-IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 +V G + + PS N + + G +AD +V I S D Sbjct: 363 IVSDGGSMPYRVKVRAPSFVN---------LQSLPYACKGVQMAD------MVVVIASLD 407 Query: 545 P 545 P Sbjct: 408 P 408 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 22/283 (7%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRIC 61 ++I P G LR+ E+E V KA G + G+E+ ++ A ++ R+ Sbjct: 18 TLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQATTVMDRMD 77 Query: 62 GVCTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 + ++ V A E L I+ +P A+ R I+L + H+V LD+ +I Sbjct: 78 YLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGT-GGLDYGNI 136 Query: 120 TSALQADPTKASEMLK---------------GVSTWHLNSPEEFTKVQNKIKDLVASGQL 164 + + +L V + P F ++ + Sbjct: 137 GTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKVAPGRIQ 196 Query: 165 GIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGK--TPHIQNLAVGG 222 + + V++I L+ R+ + + P++ Sbjct: 197 ELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPYLGYENYDF 256 Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVI 265 + + + ++ + D +I Sbjct: 257 KVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYII 299 Score = 42.2 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 37/305 (12%), Positives = 79/305 (25%), Gaps = 38/305 (12%) Query: 223 VANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNY 282 +PI+ + V+ +E+L+ I+ I + + V +V ++ +A+ T G N Sbjct: 78 YLSPISNNTGYVMAVEKLLGIEDRIPEKAR-VTRVILLELNRVASHLVGLGTGGLDYGNI 136 Query: 283 LS---VPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDE 339 + D F G N + + +++ K + Sbjct: 137 GTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKVAP-GRI 195 Query: 340 APQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLN 399 D ++ ++ + G + R+ Sbjct: 196 QELKDVMLHNPIFVDRAKGVSVITYEQALRYG----LTGRNLRVTGSDYDVRKYYPYLGY 251 Query: 400 EIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALI--TNIGKGDHTT 457 E + V + R+ E I++ L D Sbjct: 252 ENYDF-------KVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKL 304 Query: 458 FVKPNIPAT-------------------GEFKGVGFLEAPRGMLSHWMVIKDG-IISNYQ 497 + P + +E+PRG + ++V G + Sbjct: 305 VLPPKQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVR 364 Query: 498 AVVPS 502 PS Sbjct: 365 VRPPS 369 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 99/295 (33%), Gaps = 65/295 (22%) Query: 286 PEFPTDSKNGSFLFPGGYIENADL----SSYRPITSHSDEYLIKGIQESA----KHSWYK 337 T G +L PGG AD ++ + + I E +W + Sbjct: 124 GLRGTLYPQGDWLSPGGGTLTADCDRICAAIDQARQAITQLMGHDIDELVLPIAFQAWLE 183 Query: 338 DEAPQAP-------WEGTTIPAYDGWSDDGKYS------------WVKSPTFYGKTVEVG 378 + P W G + + G ++ P G+ E G Sbjct: 184 RDPTHLPGLVQAKGWAGIGAAPFLPMPEMGPPDLAARMATDRDGQYLARPDCAGRVFETG 243 Query: 379 PLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDI 438 LA + + ++ A L R+ R V E Sbjct: 244 SLA-----HWSWHPLISDLMDRFGA----------------GLLPRLAARLVALAEGLRE 282 Query: 439 LQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQA 498 ++ L P + +G+ EA RG+L+H +V+ DG IS YQ Sbjct: 283 MEELVRDLK------PEPACSLPGL----SGEGLTLTEAARGLLAHRVVLNDGKISQYQI 332 Query: 499 VVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHV 553 + P+ WN P GP ++L G P A P+ + I++ DPC+ACA+ + Sbjct: 333 LAPTEWNFHPE------GPLARALHGLP-AGPDLEWKARLLINALDPCVACAITL 380 Score = 61.8 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 9/171 (5%) Query: 17 LRIDCEIENGVVSKAWASGTMWRGME--EIVKNRDPRDAWMIVQRICGVCTTTHALSSVR 74 L + + +G V+ T R ++ + R P + ++ + +C T A++ + Sbjct: 7 LSVSLRVRDGAVAAVLIRST--RMVQAARLFAKRPPTEVLHLLPTVFSLCGTAQAVTGLN 64 Query: 75 AAESALNIDVPVNAQYIRNIILAAHTTHDHIV-----HFYQLSALDWVDITSALQADPTK 129 A E A I + R +++ A T +H + +D ++ Sbjct: 65 AMEKAAAITASPAQKAARTLLVLAETVTEHGLTIARDWPALAGGQPRLDHAKRIRGALAG 124 Query: 130 ASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 L W T ++I + + I + LP Sbjct: 125 LRGTLYPQGDWLSPGGGTLTADCDRICAAIDQARQAITQLMGHDIDELVLP 175 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 3/180 (1%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G + +++ V + G + RG+E++ +N + + R+ + + Sbjct: 214 HGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPYTDRMDYIAAINENHAY 273 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V AAE L I+VP A++IR ++ + H++ ALD +T L + Sbjct: 274 VLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWLGTY-ALDLGALTMFLYTFREREKI 332 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYL 192 M + ++ + + G L + P E L +L Sbjct: 333 MDIIEGITGARFTINYFRIGG-VFADLPYGALDAIEHLIKDLPQRINDYETLLTRNRVWL 391 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 59/179 (32%), Gaps = 30/179 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 G +A R+ + + V + + R + R + Sbjct: 411 TGAVARGSGVPYDVRKIDKYDAY-------GEVEFDIPVGEKGDSYDRYLVRMEEMRQSI 463 Query: 437 DILQNQYSAL--ITNIGKGDHTTFVKPNIPATGEFKGV----GFLEA----PRGMLSHWM 486 I++ + L ++ T + + T + +G+ G A PRG L ++ Sbjct: 464 RIIEQCIAKLRKMSKDDPYFFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYI 523 Query: 487 VIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDP 545 K + ++ + S ++ + ++++G P+AD L + DP Sbjct: 524 YNKKDGLKAHRMRIRS-------GAFYNLQVFTKAIIGRPIADAITLLS------TIDP 569 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 2/150 (1%) Query: 13 IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALS 71 + G RI +++ + A G RG E++ + + RI + + L Sbjct: 236 VHGVFRIVLQLDGEEIIDAVPEIGFHHRGAEKMGERQSWHTYIPYTDRIDYLGGVMNNLP 295 Query: 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKAS 131 V A E I+VP + +R ++ H+V FY D ++ + Sbjct: 296 YVLAVEKLAGIEVPDRVKVMRVMMAEFFRIASHLV-FYGTFTQDLGALSPVFFMFTDRER 354 Query: 132 EMLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + + ++ +DL Sbjct: 355 VFDVVEAICGGRMHPSWYRIGGVAQDLPNG 384 Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 64/450 (14%), Positives = 120/450 (26%), Gaps = 49/450 (10%) Query: 85 PVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLK-GVSTWHLN 143 P Y R I D H ++ W + + P +A+EM +ST Sbjct: 141 PAANWYEREIWDMFGIVFDGHPHLRRILLPPWWQGHALRKDHPARATEMEPFHLSTEKEE 200 Query: 144 SPEEFTKVQ--NKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIA-VAHYLQALECQRD 200 + +E + G +F N HP++ + L + A+ Sbjct: 201 AEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDGEEIIDAVPEIGF 260 Query: 201 ANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKV 260 +R +G + + I+ G + NL ++ ++ +V +V Sbjct: 261 HHRGAEKMGERQS-WHTYIPY--TDRIDYLGGVMNNLPYVLAVEKLAGIEVPDRVKVMRV 317 Query: 261 DTAVIAAFYPEWLTRGKGAVNYLSV-PEFPTDSKNGSFLFPGGYIENADLSSYRPITSHS 319 A + G + ++ P F + I + Sbjct: 318 MMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRMHPSWYRIGGV 377 Query: 320 DEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG-----WSDDGKYSWVKSPTFYGKT 374 + L G + + D P E I + G YS ++ + Sbjct: 378 AQDLPNGWDRMVR--DFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDEAIEWG--- 432 Query: 375 VEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCE 434 GP R++ + + Q R R + Sbjct: 433 -VTGPNLRACGFEWDFRKARPYSGYD-------QFEFDVPTGQHGDCYDRCAVRVQEIRQ 484 Query: 435 LQDILQNQYSALITNIGKGDHTTFVKPNI--------------------PATGEFKGVGF 474 I+ + K DH P P + Sbjct: 485 SLRIIDQCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVG 544 Query: 475 LEAPRGMLSHWMVIKDGIISNY--QAVVPS 502 +EA +G +++ I DG + Y + PS Sbjct: 545 IEATKGNNGYYL-ISDGNTTAYRVRIRTPS 573 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 81/253 (32%), Gaps = 15/253 (5%) Query: 17 LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 LR+ +++ V A G + G E+I ++ D + R+ + + ++ A Sbjct: 33 LRLVLKLDGERVVDAVPDIGYLHSGFEKIGEHLDFNQYVTVTDRMNYISPMANNVAWHGA 92 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLK 135 E + I++ +YIR II DH++ + LD T L A + Sbjct: 93 VEKLMGIEITPRCKYIRTIICELARISDHLLSTGAM-GLDTGAFTFFLYAFYQRERIYDI 151 Query: 136 GVSTWHLNSPEEFTKVQN-----------KIKDLVASGQLGIFANGYWGHPAMKLPPEVN 184 + +T+V KI+D + + I + + Sbjct: 152 FETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQTIDDMERLVNRNRIFVDRMK 211 Query: 185 LIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIK 244 + + +A VA G T ++ ++ + Sbjct: 212 GVGLLSKERATNMSATG--PVARASGVTRDLRKDEPYLAYGDLDFQVCCATAGDCFARYY 269 Query: 245 SFIDKLSDFVEQV 257 + ++ + ++ V Sbjct: 270 VRMAEMRESLKIV 282 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 69/289 (23%), Gaps = 45/289 (15%) Query: 278 GAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK 337 GA + + + F G + ++ +I+ I++ + ++ + Sbjct: 133 GAFTFFLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLR-TFPQ 191 Query: 338 DEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 D G S ++ GP+A R+ Sbjct: 192 TIDDMERLVNRNRIFVDRMKGVGLLSKERAT----NMSATGPVARASGVTRDLRKDEPYL 247 Query: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKG--DH 455 + + A R R E I+ L D Sbjct: 248 AYGDLDF-------QVCCATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNVGMDD 300 Query: 456 TTFVKPNIPATGEFKG---------------------VGFLEAPRGMLSHWMVIKDGIIS 494 + +G +EAP G L ++V ++ Sbjct: 301 RAALPSKAEVYQTIEGTITHFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVA 360 Query: 495 -NYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHS 542 + PS + + + G ++D L + I + Sbjct: 361 YRARCRPPS---------FIHFSLFPELIRGHTLSDVVAVLGSLNIIAA 400 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +E +V G + G+E+ + + +V+R+ + +A + Sbjct: 42 HGVLRLILTLEGEMVRDVKPIIGYVHTGIEKTAEQKAYWKVIPVVERMDYLSYYFNAYAF 101 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E L +DVP AQY+R I + + H+V S +D I + Sbjct: 102 CGAVEKLLEVDVPKRAQYLRVIHMELNRIMSHLVWLGT-SCIDLGAIGVWWYCFREREQV 160 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + + + +V I+D+ Sbjct: 161 LDLFEMSSGQRMHTRYFQVGGVIEDIPRG 189 Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 20/175 (11%), Positives = 34/175 (19%), Gaps = 28/175 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GPL R++ + + R R E Sbjct: 239 TGPLLRATGNPWDLRKAAPYCSYDDFRFRIPVGTEG-------DNYDRYRVRHAEILESC 291 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATG--------------------EFKGVGFLE 476 I+ L + P + +E Sbjct: 292 AIIDQAIDGLPEGPFITEDRKVALPPRHELATSMEALIHHFKLVTEGFRVPPGEVYHPIE 351 Query: 477 APRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 +PRG L ++ + PS N + + DP Sbjct: 352 SPRGELGCFVRSDGSSKPARVHMRDPSFVNLQATAAATRDTYIADLVATLAMLDP 406 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G R ++ V G + RG+E++ ++R R+ + + L Sbjct: 25 HGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRTYTQVIPYTDRLDYLAGMLNNLGY 84 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V+ E L ++VP A+Y+R I+ H+V + ALD T+ + Sbjct: 85 VQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASM-ALDLSGWTAWFPPFRERERI 143 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + T + ++ D+ Sbjct: 144 LDLFEMTCGSRLTVSYMRIGGVAADIPPG 172 Score = 51.8 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 41/155 (26%), Gaps = 13/155 (8%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP R++ + + + + R + R + + Sbjct: 222 TGPNLRACGLPFDLRKARPYSIYD-------RFDFDIPTLNNGDSYDRFVIRLLEMEQSA 274 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISN 495 I++ L + P + + +E +G+L ++V G Sbjct: 275 RIIRQAMEQLPDGPVQA-----KVPRVLKLPRGEVYHQIEGAKGILGFYLVSDGGSKPYR 329 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADP 530 PS N G G + +V D Sbjct: 330 LHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDI 364 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 1 MSQR-----ITIDPVTR-IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDA 53 MSQ+ + I P+ ++ + ++ V+ K + G RG+E + R+P Sbjct: 1 MSQKKAPYELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQI 60 Query: 54 WMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 + RICG+C HAL +A E +I+VP A Y+R II HI+ + Sbjct: 61 LHLCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAA 119 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 16/191 (8%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP + R + + + + + RII R + Sbjct: 217 VGPTSRASGLAMDVRIDSPYAAYGDLD-FDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSI 275 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 DI++ + + + +EAPRG H++ + +G Sbjct: 276 DIIRQCMKQMPEGPVLAEEKYAKLLMNLKKASGEAFARVEAPRGEDMHYVRM-NGKQE-- 332 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA--VHVV 554 P W +++ + + + L G +AD + + S DPCM+C V VV Sbjct: 333 ---APEMWKVKASTYSNQM-AWVEILQGEQIAD------IPIIVASIDPCMSCTDRVAVV 382 Query: 555 DADGNEVVSVK 565 DGN + K Sbjct: 383 GQDGNAGIMTK 393 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + PV IE GH R E V+ G + +G+E+I ++ + +R Sbjct: 170 IPVGPVHAGVIEPGHFRFSVAGEP-VLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTS 228 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 G H+ + +A E I+VP A+YIR + L ++H+ +S Sbjct: 229 GDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISL 280 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 35/136 (25%), Gaps = 15/136 (11%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A R + + R+ + E Sbjct: 377 VGPGARASGVSRDVRRDHPYAAYSDLNFAVHIRKEG-------DVNARMQVKIGEIYESM 429 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWM-VIKDGIISN 495 I++ L + G+ +EAPRG L HW+ ++ Sbjct: 430 SIIEQALDRLPAGKIRAATGNI-------PQGRVGISLVEAPRGELLHWILSGENDRPFR 482 Query: 496 YQAVVPSTWNSGPRNF 511 ++ PS N Sbjct: 483 HKIRDPSFCNWLAMEI 498 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 3/168 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ V A G M RG E++ + RD R ++ R + + L Sbjct: 40 HGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANRHDWLSAFANELGV 99 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E L ++VP A ++R + + +H++ S + + + + Sbjct: 100 VLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLG--SYPLEIGAITPMFYAFRERET 157 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 + + +K+ V +G G Sbjct: 158 LQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLPD 205 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 113 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 83/281 (29%), Gaps = 19/281 (6%) Query: 2 SQRITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQR 59 I + P ++ ++ V++ A RG+E+ V ++ + +++R Sbjct: 7 GTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLENIYLLER 66 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFY---------Q 110 ICG+C+ H S E L++DVP A YIR +I H H++ Sbjct: 67 ICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHEIGFDT 126 Query: 111 LSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIK-------DLVASGQ 163 L W D L + ++ T Q + + Sbjct: 127 LWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDELEERIDFY 186 Query: 164 LGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGV 223 L N + V+ Y A R A+ + + P+ + Sbjct: 187 LETVPNEETVRMRCENVGTVSAELAREYCAAGPVGR-ASGLPVDVRRDAPYAAYDEMDFD 245 Query: 224 ANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAV 264 L R+ I I + + D Sbjct: 246 VITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKA 286 Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 51/387 (13%), Positives = 104/387 (26%), Gaps = 51/387 (13%) Query: 176 AMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVL 235 + + YL+ + + + H + A+G D L + Sbjct: 42 SYNHRGIEQAVLSKSYLENIYLLERICGICS-----HAHTTSFAIG------VEDLLDLD 90 Query: 236 NLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNG 295 R YI++ I +L + + A + + Sbjct: 91 VPRRANYIRTLIGELERIHSHMLWLGVAGHEIGFDTLWQYAWR----------DREIVLD 140 Query: 296 SFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDG 355 G + +++ + + + E + + + T+P + Sbjct: 141 LLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEK-----MDELEERIDFYLETVPNEET 195 Query: 356 WSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEV 415 + S + GP+ R + + + Sbjct: 196 VRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAYDEMDF-------DVIT 248 Query: 416 AQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFL 475 L R R E I++ + + K V+ + E V Sbjct: 249 DTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKA-SPKPVQALLAQIPEDDVVSRY 307 Query: 476 EAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPL 534 EAPRG L H++ VP+ N ++L G+ +AD Sbjct: 308 EAPRGELIHYIRADGTDTPERVHIRVPTLANW---------PTVVEALRGSYIADTPI-- 356 Query: 535 EVVRTIHSFDPCMACAVHV-VDADGNE 560 + DPC++C + V+ DG+ Sbjct: 357 ----VVAGIDPCISCTSRIGVETDGSH 379 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ + + G RG E+I + + RI + + + L+ Sbjct: 423 HGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAERQHWNQYIPYTDRIDYLAGSLNNLAY 482 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 + + E+ ++VP A+YIR ++ H+V + D +T A ++ Sbjct: 483 LYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAH-DVGAMTPVFYAFDSREKI 541 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + ++ DL Sbjct: 542 FDIIELITGGRMHPAWFRIGGVPDDLPDG 570 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 17/181 (9%) Query: 383 MLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHST--LGRIIGRTVHCCELQDILQ 440 M R Q + E ++ + + + LH L R + R C L + L+ Sbjct: 212 MEDAGFLARPQWQGRCYESSSLTRTCSPLLSALKPLHGNGLLRRTVARLTELCRLFEALR 271 Query: 441 NQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVV 500 G A + GVG +EA RG L H + ++ IS+Y + Sbjct: 272 Q---------GDDGALLAALQPFSAAQDGMGVGAVEAARGRLLHRVSLEGQQISHYAILA 322 Query: 501 PSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNE 560 P+ WN P+ G Q L G L+ I S DPC+ A+ VV+AD E Sbjct: 323 PTEWNFHPQ------GVVAQGLAGLQGDRQAVLLQAHHVIESIDPCVGYALTVVEADEEE 376 Query: 561 V 561 + Sbjct: 377 L 377 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R E ++ G RG+E++ + + A ++ +R Sbjct: 73 VPVGPVHAGIIEPGHFRFSVLGE-RILHLEVRLGYQHRGVEQLFQGKSLEQALLLAER-A 130 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G HAL+ +A E+AL ++VP A +R ++L H+ H L + Sbjct: 131 GGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLFTD--IGYAY 188 Query: 122 ALQADPTKASEMLKGVSTWHLNSPEE 147 A + + + + Sbjct: 189 AATQVGKVRALLQGQLERLTGHRYGR 214 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 50/179 (27%), Gaps = 31/179 (17%) Query: 366 KSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRI 425 + G VGP A R+ T V L R Sbjct: 271 AQARWLGL---VGPAARACGLGRDLRQDDALY-----------QTFTPVVRSGGDVLARA 316 Query: 426 IGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHW 485 + L AL TT +PAT + +EA RG L +W Sbjct: 317 QVYAEELRQGFVYLDRFLGALPQGEVANGPTTPRVDPVPAT--AEAYSRVEAGRGELFYW 374 Query: 486 MVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 + ++ + + V PS N E ++ G + D + SFD Sbjct: 375 VRLRGNRVERVKIVDPSFKNWR---------ALELAVRGMGLPDFPIINK------SFD 418 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 19/281 (6%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R C E V + G RG+E +K+ + + + Sbjct: 148 VAVGPVHAGIIEPGHFRFQCHGET-VYHLEISLGYQHRGVEPALKDGPDKRTLHYFETLA 206 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL------- 114 G + H + E+ IDVP Q IR I +HI +S Sbjct: 207 GDTSIGHGTAGCCMIEALAGIDVPPRGQAIRAIAAELERIANHIGDLGAISGDVGFLPTM 266 Query: 115 --------DWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI 166 D +++T+ + + ++ G + W + + ++ + + Sbjct: 267 SYCGRIRGDALNLTAMICGNRFGRGLVIPGGTAWDITHAQTGELLRRLDEIHADAHSAIE 326 Query: 167 FANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 A A + + A+ + + P+ Sbjct: 327 LMLNTPSVLARLENTGQVPTQTAREIGLVGLAARASGLKQDVRTSHPYENYRLTPLPVIT 386 Query: 227 INLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAA 267 R I++ + + + + A + Sbjct: 387 RKTGDCLARAQIRWGEIQASFKFIRTLLADLPGGEVANLWE 427 Score = 41.4 bits (95), Expect = 0.087, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 36/131 (27%), Gaps = 14/131 (10%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VG A R S + +LT + + L R R Sbjct: 355 VGLAARASGLKQDVRTSHPYE-------NYRLTPLPVITRKTGDCLARAQIRWGEIQASF 407 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISN 495 ++ + L + P AT +G RG + H G S Sbjct: 408 KFIRTLLADLPGGEVANLWEGKLPPQKMATILVEGW------RGEICHTAATDSAGKFSF 461 Query: 496 YQAVVPSTWNS 506 Y+ V PS N Sbjct: 462 YKIVDPSFHNW 472 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 11/252 (4%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR + + G RG+E+I + + R+ + Sbjct: 194 HGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGHSYHNFIPYTDRVDYLGGVLGEWPY 253 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 +RA E I VP A+ IR ++ H+V D + A A +A Sbjct: 254 LRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSY-GNDLGTMGPAFYAFRDRAWL 312 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQ---LGIFANGYWGHPAMKLPPEVNLIAVA 189 + +F ++ DL + L + G P + N I A Sbjct: 313 LELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEKGLPDSERLTVENPIFRA 372 Query: 190 HYLQALECQRDANR---VVALL---GGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYI 243 + ++L G+ ++ A G+ + ++ + + Sbjct: 373 RTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDRVDFEVPVTTAGDAWSRT 432 Query: 244 KSFIDKLSDFVE 255 I ++ + + Sbjct: 433 WLHIAEIRESIR 444 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 59/250 (23%), Gaps = 43/250 (17%) Query: 284 SVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKD----- 338 S + F + + H + I G+ + W D Sbjct: 291 SYGNDLGTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALL 350 Query: 339 ---EAPQAPWEGTTIPAY---DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE 392 E E T+ G + ++ + L + R+ Sbjct: 351 RRIEKGLPDSERLTVENPIFRARTEGVGVVTAEQAERW----CATSILLRSTGRAFDLRK 406 Query: 393 STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGK 452 + L + V + V R E IL+ L Sbjct: 407 AAPYGLYDRVDFE-------VPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTL 459 Query: 453 G-DHTTFVKPNIPA-------------------TGEFKGVGFLEAPRGMLSHWMVIKDGI 492 D + P +G E+ RG+L +++ + DG Sbjct: 460 ACDAPLALMPKSRTLLDIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFV-VSDGG 518 Query: 493 ISNYQAVVPS 502 Y+ V + Sbjct: 519 PKPYRLRVRT 528 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 2/148 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ V +A G + RG E++ +++ + + R+ V + + Sbjct: 38 HGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAY 97 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 VRA E+ L I+ P+ AQYIR + +H+++ ALD + L A + Sbjct: 98 VRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGT-GALDLGAMAVMLYAFREREEL 156 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVA 160 M + + + ++L Sbjct: 157 MDCYEAVSGARMHATYYRPGGVYRELPE 184 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 5/153 (3%) Query: 2 SQRITIDPVT-RIEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQR 59 + I + P+ +E + E++ V + G + RG+E + R+ ++ +R Sbjct: 3 TYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTER 62 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 +C +C+ +H + A ES + VP AQY+R I H+ + L+ + Sbjct: 63 VCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILA---HIVG 119 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQ 152 +L +A E+++ + + + Sbjct: 120 FDSLFMHVMEAREIMQDTKEAVFGNRMDIAAMA 152 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 49/377 (12%), Positives = 99/377 (26%), Gaps = 59/377 (15%) Query: 182 EVNLIAVAHYLQALECQRDANRVVALLGGK-----TPHIQNLAVGGVANPINLDGLGVLN 236 ++ V ++ L +R+ + + L H Q G++ Sbjct: 34 DITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCSNSHPQT------YCMALESITGMVV 87 Query: 237 LERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSK--N 294 R Y++ D+ ++ V + A + + + Sbjct: 88 PPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMHVMEAREIMQDTKEAVFGNRMD 147 Query: 295 GSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYD 354 + + GG + D D+ E P T D Sbjct: 148 IAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEII------------PLYQTNPSIVD 195 Query: 355 GWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLE 414 G S + +GP+A R+ + + + L Sbjct: 196 RTRGIGVLSAADCVDYG----LMGPVARGSGHAYDVRKQAPYAVYDRLDFEMALGE---- 247 Query: 415 VAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGF 474 R + R +++ + K +P + V Sbjct: 248 ---HGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAG-------PVPPIPAGEAVAK 297 Query: 475 LEAPRGMLSHWMVIKDG-IISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 EAPRG L +++ + VP+ N N + G ++D Sbjct: 298 TEAPRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNV---------MMAGARISD---- 344 Query: 534 LEVVRTIHSFDPCMACA 550 + ++S DPC++C Sbjct: 345 --IPLIVNSIDPCISCT 359 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 15/230 (6%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDP---RDAWMIVQ 58 I + PV IE GH R E+ + KA + RG+E++ + R+ R+A + + Sbjct: 145 IPVGPVHAGLIEPGHFRFSVIGESILRLKARLWF-VHRGVEKLFEGRNALGAREAVELAE 203 Query: 59 RICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVD 118 RI G + H+L+ A E AL +DVP +R +++ ++H+ L+ Sbjct: 204 RISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALANDVGFA 263 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMK 178 + +A + + T H +++L +L A + Sbjct: 264 LANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGVVLQELPDPAELHAVAAEVAEISELT 323 Query: 179 LPPEV-------NLIAVAHYLQALECQRDANRVVAL-LGGKTPHIQNLAV 220 L V + + +AL C R + + H Sbjct: 324 LRNSVVYDRFAETAVLHSEDARALGCLGYVARASGIATDARLDHPTAELP 373 Score = 49.9 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 4/129 (3%) Query: 381 ANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQ 440 A L L ++ + + T A L R R + Sbjct: 344 ARALGCLGYVARASGIATDARLDHPTAELPVTAVAAGGGDVLARYTIRRDEFAASVALAC 403 Query: 441 NQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAV 499 + + GVG +E RG + H + + G I+ + V Sbjct: 404 HLVENHHGRTRFAPPPAANGAR---SAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIV 460 Query: 500 VPSTWNSGP 508 PS +N Sbjct: 461 DPSWFNWPA 469 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 18 RIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRAA 76 R+ +E+ +V A + G RG+E I++ A + +++CG+C+ H +S R Sbjct: 37 RVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVG 96 Query: 77 ESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ 110 E AL I++P A Y+R + H H+++ Sbjct: 97 EGALGIEIPERAVYLRVLAEELERLHSHMLYLGH 130 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 27/212 (12%) Query: 348 TTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLAN-----MLVKLAAGRESTQNKLNEIV 402 T+ D D ++ P + G L+ + V + R + Sbjct: 189 DTMDYIDEKVADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTE 248 Query: 403 AIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPN 462 + + I+ R E I++ L V Sbjct: 249 MFEYEPFEFDIITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVDSP 308 Query: 463 IPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSL 522 + + ++E PRG+ H ++DG + + PS N +G ++S Sbjct: 309 VYKS-------YIEVPRGVCYHSYGLEDGKVRHSIIRTPSMSN---------IGAMQESC 352 Query: 523 VGTPVADPNKPLEVVRTIHSFDPCMACAVHVV 554 +G P+ D I S DPC C + Sbjct: 353 IGHPIQD------AQLAIVSCDPCFTCTDRAI 378 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 2/216 (0%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+ + +A G + RG E++++ + A R+ V T+ Sbjct: 108 HGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCF 167 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E LNI++P A++IR + +H++ A+D +T L + Sbjct: 168 SLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSV-LSHAMDVGALTPFLWGFEEREKL 226 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYL 192 M + + +D+ I+ A + V+ L Sbjct: 227 MEFYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATHSATASTKLKNCSPKIVSGKL 286 Query: 193 QALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN 228 + +R + +++ G++ N Sbjct: 287 EPRNRRRFLPQRLSITALAESCSVAPLFHGMSANPN 322 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 78/264 (29%), Gaps = 12/264 (4%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 I + P + G LR+ ++ V G + R ME+I ++R V R Sbjct: 13 INLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYLPYVTRWDY 72 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 + T +V A E + VP A+YIR I+L H++ D + Sbjct: 73 LATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPF-MADIGATSPF 131 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS---GQLGIFANGYWGHPAMKL 179 + + + + +V DL + Sbjct: 132 FYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLPPKIDEYER 191 Query: 180 PPEVNLIAVAHYLQALECQRD------ANRVVALLGGKTPHIQNLAVGGVANPINLDGLG 233 N I R+ + + G ++ + + + ++ + Sbjct: 192 LITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYDELDWNVAW 251 Query: 234 VLNLERLMYIKSFIDKLSDFVEQV 257 + L I ++ + V+ + Sbjct: 252 DTGGDTLARYVVRIQEMRESVKMI 275 Score = 45.6 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 29/170 (17%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP+ R+ ++ + + + TL R + R E Sbjct: 221 GPMLRASGVNWDLRKVDHYEIYDELDWN-------VAWDTGGDTLARYVVRIQEMRESVK 273 Query: 438 ILQNQYSALITNIGKGDHTTFVK--PNIPATG-----------------EFKGVGFLEAP 478 +++ L + + P G + +EAP Sbjct: 274 MIRQALDQLPGGPYENLEAQRLSGGPKSEWNGFDYQFIGKKSSPTFKMPRGEHYVRVEAP 333 Query: 479 RGMLSHWMVIKDGI-ISNYQAVVPSTWNSG--PRNFNDDVGPYEQSLVGT 525 +G L +++ D ++ P N P+ +++G+ Sbjct: 334 KGELGVYLIGDDSTFPWRWKIRPPGFINLAVLPKLVQGTKLADLMAILGS 383 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E++ VV + G + RG E++++++ A R+ V + Sbjct: 21 HGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMNQEHAF 80 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E LNI +P Q IR + H+++ + D +T L + Sbjct: 81 CLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAM-DVGALTPPLWGFEEREKL 139 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 M+ + +V +DL + Sbjct: 140 MVFYERASGARMHANYFRVGGVHQDLPSK 168 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 68/199 (34%), Gaps = 3/199 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G+ + ++ + +A G + RG E++++ R + ++ RIC + + Sbjct: 16 HGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIPRICVPEPDINEMVY 75 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL-DWVDITSALQADPTKAS 131 A E I+VP A +IR IIL +H++ + + AD Sbjct: 76 AMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLYTGPNWGLADRDLIL 135 Query: 132 EMLKGVSTWHL-NSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAH 190 ++ + ++ + + V+ +++ P + N + Sbjct: 136 DIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRLPEYEDLILKNSLFQRR 195 Query: 191 YLQALECQRDANRVVALLG 209 L + + + G Sbjct: 196 TKDKLLLPAEVVWELGVTG 214 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 78/259 (30%), Gaps = 10/259 (3%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + P + G R E++ ++ G + RG E+ +N + R+ Sbjct: 49 TVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCENVTWTQCFPYTDRLN 108 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSA--LDWVDI 119 V + + + A E +DVP A+Y+R + H DH+ ++ Sbjct: 109 YVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMELGAMTVF 168 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 A++A + + ++ V D + Sbjct: 169 LYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGYVDEIDQ 228 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDGLG 233 N I + R + G G+ ++ A V + I+ D Sbjct: 229 LVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRIDFDIPV 288 Query: 234 VLNLERLMYIKSFIDKLSD 252 N + + ++++ Sbjct: 289 GTNGDNFDRFQMRMEEMRQ 307 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 41/168 (24%), Gaps = 29/168 (17%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP + R++ + + + + V R R + Sbjct: 257 TGPCLRASGEPYDLRKAAPYLVYDRIDF-------DIPVGTNGDNFDRFQMRMEEMRQSD 309 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIP--------------------ATGEFKGVGFLE 476 I++ ++ + +V P P + G+ E Sbjct: 310 RIIRQCFAQMEPGEIAVQDFRYVLPPKPLVYGTIEGLMAHFKIIMEGIQVPAGEAYGYTE 369 Query: 477 APRGMLSHWMVIK-DGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLV 523 A G L ++V G P W VG L+ Sbjct: 370 AANGELGFYVVSDGGGRPYKLGLRAP-GWPMLAALPFMSVGSLLSDLI 416 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 21/273 (7%) Query: 1 MSQRITIDPVTR--IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIV 57 M I P IE LR+ + ++ G + RG+E+ + D A + Sbjct: 1 MRTTIQFGPQHPVWIE-PLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE-WDYNKAAYLS 58 Query: 58 QRICGVCTTTHALSSVRAAES-ALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQ------ 110 +R+C +CT H+ E +++P A IR I+L H H + Sbjct: 59 ERVCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIG 118 Query: 111 ---LSALDWVDITSALQ-ADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA-----S 161 + L + L + T + +L G++ + ++ +I D + Sbjct: 119 FENMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRA 178 Query: 162 GQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVG 221 ++ + V +A L + + V + PH+ V Sbjct: 179 HEIERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVK 238 Query: 222 GVANPINLDGLGVLNLERLMYIKSFIDKLSDFV 254 +L R+ + ID + V Sbjct: 239 VTPIVEKDGDCWARSLVRVRELFQSIDLIRQLV 271 Score = 82.2 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 29/174 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP+A R + + L V + T V + R + R + Sbjct: 212 VGPVARGSNVPYDVRHAAPHLLYREVKV-------TPIVEKDGDCWARSLVRVRELFQSI 264 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGI-ISN 495 D+++ L + A E + + +EAPRG L +++ K + Sbjct: 265 DLIRQLVPLLD------GTPDELFAKSKAMPEGENIARVEAPRGELFYYVRGKKSKELDR 318 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMAC 549 + + + + G+ +AD V +FDPC+ C Sbjct: 319 VKVRTST---------YGNGLGIAPLIKGSHIAD------VGLITITFDPCIGC 357 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%) Query: 14 EGHLRIDCEIENGVVSKA-WASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ +E VV G + G+E+ ++R + +V R+ + + Sbjct: 31 HGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVFTLVDRLDYLSGPAEEQAF 90 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E +NI+VP AQ IR I+L H++ SAL+ + + + + Sbjct: 91 AGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGT-SALELNMSSVFMYSFAEREKI 149 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDL 158 + ++ KDL Sbjct: 150 LDLFEQVSGARMFPSLWRIGGLAKDL 175 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 41/193 (21%) Query: 373 KTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHC 432 + + GP+ R++ E + + R + R Sbjct: 224 QYMCTGPVLRASGISYDIRKAYPYLGYENYNF-------DIPTHIDGDSYARYLVRMEEM 276 Query: 433 CELQDILQNQYSALITNIGKG-DHTTFVKPNIPATGEFKGV------------------- 472 + I++ + L + D + P + V Sbjct: 277 LQSISIIEQAIARLKPGVVLTNDRKVALPPRKELARSMEAVIHQFKLISEGLHPPVGSVY 336 Query: 473 GFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNK 532 +E+ RG L H++ I DG Y+ V S V ++ L G ++D Sbjct: 337 NCVESARGELGHYV-ISDGTPKPYRLRVRS-------PSFSHVEVLKKVLRGHVISD--- 385 Query: 533 PLEVVRTIHSFDP 545 VV I S DP Sbjct: 386 ---VVVAIASVDP 395 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+ V+K G + RG E++++ + A R+ V + Sbjct: 99 HGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 158 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E LNI+VP+ A+YIR + +H++ LD +T + Sbjct: 159 SLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGT-HILDVGALTPFFWFFEEREKL 217 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 M + + +DL Sbjct: 218 MEFYERVSGARMHAAYIRPGGVSQDLPLG 246 >UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL3_RHOVA Length = 394 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 35/201 (17%) Query: 354 DGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTL 413 DD + +V +P + G E PLA L Sbjct: 227 QRLFDDSQAHFVAAPDWEGAPRETSPLAR---------------------SLDHPLIRAL 265 Query: 414 EVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVG 473 E R+ V + L++ + L D P T G+ Sbjct: 266 ETDDGFGLGARLAACLVELASVPRRLRDAAATL-------DAPNHAAPERDETAPGIGLS 318 Query: 474 FLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 +EA RG L H + + G +S Y+ + P+ WN P G + L D + Sbjct: 319 QIEAARGRLVHAVEMSGGKVSRYRILAPTEWNFHPE------GAAARGLARIAQGDSHDV 372 Query: 534 LEVVRT-IHSFDPCMACAVHV 553 + R + + DPC+ V V Sbjct: 373 ARIARLFVTAVDPCVGYEVRV 393 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 103/316 (32%), Gaps = 22/316 (6%) Query: 5 ITIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGV 63 + + P GH+RI ++ ++ G + R +E++ +NR+ +V+R + Sbjct: 30 LNVGPQHPGSGHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERPAIL 89 Query: 64 CTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSAL 123 + L + A E L +DVP AQY+R+ + H+ LS ++ ++ Sbjct: 90 DSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSI--FLGHSTGF 147 Query: 124 QADPTKASEMLKGVSTWHL----NSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKL 179 + + NS V+ I + L + K Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207 Query: 180 PPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLD--- 230 N A ++ +G G ++ + G + ++ + Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267 Query: 231 ----GLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVP 286 L RL I+ + L ++ + + +++ + + + + + + Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNI--PEGNILSDRFFKQIPPTRLKKYWETYR 325 Query: 287 EFPTDSKNGSFLFPGG 302 SF P G Sbjct: 326 RIVLPGYYASFRPPKG 341 Score = 63.4 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 110/389 (28%), Gaps = 52/389 (13%) Query: 139 TWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQ 198 EF VQ ++ G + + ++++ V ++ L Sbjct: 14 LAATGMSVEFIPVQGELNVGPQHPGSGHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSEN 73 Query: 199 RDANRVVALLGGKTP-HIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQV 257 R+ ++ L+ ++ +G + LGV ER Y++SF +++ + Sbjct: 74 RNYMHLIPLVERPAILDSIHMNLGYI--IAVEKILGVDVPERAQYLRSFAAEVNRIASHL 131 Query: 258 YKVDTAVIAAFYPEWLTRGKGAVNYLS--VPEFPTDSKNGSFLFPGGYIENADLSSYRPI 315 Y + I + G G + S++ PGG + + + Sbjct: 132 YGLGILSIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDIS-QEIKDM 190 Query: 316 TSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTV 375 T + Y + +++ K +Y + + Sbjct: 191 TLKAISYQRRRLEDWKKIFFYNPSIRARLENVGVMSKENAIKWGA--------------- 235 Query: 376 EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCEL 435 VGP R+ + + + V + L R + R + Sbjct: 236 -VGPNLRASGVYYDVRKIEPYGAYDKLDFE-------IPVYKEGDGLARGLVRLEEIEQS 287 Query: 436 QDILQNQYSALITNIGKGDHTTFVKPNIPATG--------------------EFKGVGFL 475 IL+ + D P + + + + Sbjct: 288 MRILEQIIKNIPEGNILSDRFFKQIPPTRLKKYWETYRRIVLPGYYASFRPPKGEAISRV 347 Query: 476 EAPRGMLSHWMVIKDG--IISNYQAVVPS 502 EA RG L +++ + DG + + PS Sbjct: 348 EAGRGELVYYV-VSDGSPKPYRLRMITPS 375 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 81/273 (29%), Gaps = 17/273 (6%) Query: 3 QRITID-----PVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMI 56 +RI ++ P T G LR+ EI+ V++A G + G+E+ ++ R+ Sbjct: 37 ERIIVNMGPQHPST--HGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTTF 94 Query: 57 VQRICGVCTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSAL 114 V R+ + + + E L I+ +P A +R +++ + H+V + Sbjct: 95 VTRMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRLSSHLVCI-ATGGM 153 Query: 115 DWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS---GQLGIFANGY 171 + T + + + L F + +DL Sbjct: 154 ELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDRLREFIKTMK 213 Query: 172 WGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGK---TPHIQNLAVGGVANPIN 228 P N I A + G +L Sbjct: 214 KNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPHDLRKSDPYCGYE 273 Query: 229 LDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVD 261 V + F+ +L + + + ++ Sbjct: 274 TYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIE 306 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 11/190 (5%) Query: 2 SQRITID-----PVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWM 55 +RI ++ P T G LR+ EIE V +A G + G+E+ ++ R Sbjct: 36 GERIVVNMGPQHPST--HGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVT 93 Query: 56 IVQRICGVCTTTHALSSVRAAESALNI--DVPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 V R+ + + + E L I ++P IR +++ + H+V Sbjct: 94 FVTRMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVAL-ATGG 152 Query: 114 LDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 ++ +T + + L + + +DL + I Sbjct: 153 MELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQL 212 Query: 174 HPAMKLPPEV 183 ++ E+ Sbjct: 213 RQPLREMGEL 222 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 2 SQRITIDPVTRIEGH-LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQR 59 S R+ + P I LRI + V G RG+E+I++ + A + +R Sbjct: 26 SHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAER 85 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106 +CG+C+ H + + E D ++R ++ H++ Sbjct: 86 VCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLI 132 Score = 79.9 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 63/189 (33%), Gaps = 32/189 (16%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP A A+G + +L E V G + L RI+ R C + Sbjct: 236 VGPQAR-----ASGVPESDMRLQEPV---YPELGFKPVYRKEGDNLARILVRYDECLQSI 287 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIK-DGIISN 495 ++++ L + + +EAPRG L + M + G++ Sbjct: 288 ELIERIVDELPEGRHRRELEVNAGHVDN---------RVEAPRGELVYDMELAPGGVVKR 338 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVD 555 PS N + E G+P + V T S DPC+AC V Sbjct: 339 VTIRTPSVPN---------IRVLEAIAPGSPSI-----ADAVATYASLDPCVACNERFVV 384 Query: 556 ADGNEVVSV 564 D E + Sbjct: 385 IDEREGKVL 393 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 3/166 (1%) Query: 5 ITIDPVTR-IEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICG 62 + I P G +R ++ + G + RG E+ +N R+ Sbjct: 180 LNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQIIPYTDRLNY 239 Query: 63 VCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 + + +A E AL +++P ++R I+ DH V + +D +T+ Sbjct: 240 CSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMF-VDMGGLTNY 298 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA 168 + F ++ D + + A Sbjct: 299 WYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLA 344 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 94/335 (28%), Gaps = 25/335 (7%) Query: 6 TIDPVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVC 64 + P T G LR+ E+E V +G + G+E+ ++ R R+ V Sbjct: 59 PVHPST--HGVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRTYNQGVAYCSRMDYVA 116 Query: 65 TTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSA 122 ++ A E AL + VP A IR +++ + H+V + + T+ Sbjct: 117 PFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVAVGT--GANELGATTM 174 Query: 123 LQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPE 182 L E+L+ + + + + + E Sbjct: 175 LTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDTIDMIREKLPLVKR--DIGE 232 Query: 183 VNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMY 242 + + +A+ + + ++ + + P G L++ +L Sbjct: 233 MQDLIMANPIFIGRMKNVGWLPLS----------TMMALSLTGPCLRAGGLPLDMRKLQP 282 Query: 243 IKSFIDKLSD----FVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFL 298 + D Y Y + P + F Sbjct: 283 YCGYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGEPVMIADPKFA 342 Query: 299 FPGGYIENADLSSYRPITSHSDEYLIKGIQESAKH 333 +P AD P L ++E H Sbjct: 343 YPSKLTIGADGQGQDPEHVSH--ILGHSMEELIHH 375 >UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJU8_9DELT Length = 178 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 13/168 (7%) Query: 401 IVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVK 460 + + T A S R + + + + + T Sbjct: 13 PTSALGRFRELTAANALPQSAFHYHYARLIEIIHGLERIGELLNEPEILGKRVRATA--- 69 Query: 461 PNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISNYQAVVPSTWNSGPRNFNDDVGPYE 519 +GVG EAPRG L H I ++G IS ++ + N+ N + Sbjct: 70 ----GANAPEGVGICEAPRGTLIHHYGIDEEGKISAVNMIIATGNNN--LAINQGLLQAA 123 Query: 520 QSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKVL 567 ++L+ + + +DPC++C+ H A G+ +V+++ Sbjct: 124 RALIQNGQFSEGALNRIEALVRCYDPCLSCSTH---AQGSRPFTVEII 168 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 2/147 (1%) Query: 14 EGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ ++ V G + RGME+I +NR V R + T + Sbjct: 23 HGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRWDYLATMFTEAIT 82 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V E NI VP A YIR I+L H++ D T + Sbjct: 83 VNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPF-MADIGAQTPFFYIFREREFV 141 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLV 159 + + F ++ DL Sbjct: 142 YDLFEAATGMRMMHNFFRIGGIAADLP 168 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 11/175 (6%) Query: 2 SQRITID-----PVTRIEGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWM 55 ++RI ++ P T G LR+ EIE V++ G + G+E+ + R A Sbjct: 78 NERIVVNMGPQHPST--HGVLRLVLEIEGETVTETRLVIGYLHTGIEKSCEYRTWTQAVT 135 Query: 56 IVQRICGVCTTTHALSSVRAAESALNID--VPVNAQYIRNIILAAHTTHDHIVHFYQLSA 113 + R + + + + E L I VP A IR +++ H+V Sbjct: 136 FLTRADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRIASHLVWL-ATGG 194 Query: 114 LDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFA 168 ++ T+ + + + L + + +DL + I A Sbjct: 195 MELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGAERAIRA 249 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 108 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 13/261 (4%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAW-ASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 +I I P G R+ ++ + G + R E++ + + R+ Sbjct: 8 QINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPYTDRLD 67 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 + + + A E I VP A+YIR +++ +H L D + Sbjct: 68 YFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFL-LNDMGAWQT 126 Query: 122 ALQADPTKASEMLKGVSTWHLNSPE----EFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 L + ++L F V + + Sbjct: 127 PLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSFFDEF 186 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDG 231 + + N I ++ + ++ ++ G G ++ V + ++ D Sbjct: 187 ERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFDI 246 Query: 232 LGVLNLERLMYIKSFIDKLSD 252 + I+++ Sbjct: 247 PIGSVGDVYDRFLIRIEEMRQ 267 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 26/172 (15%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP+ R + + + + + + + R + R + Sbjct: 217 TGPVLRASGIPYDVRRAEPYSVYDELDF-------DIPIGSVGDVYDRFLIRIEEMRQSY 269 Query: 437 DILQNQYSALITNIGKGDHTTFV---KPNIPATGEFKGVGFLEAPRGML-SHWMVIKDGI 492 ILQ L G + K +E+P+G L + + Sbjct: 270 RILQQVIERLPDTTGGHINPAMANIGKQKALRPPPGDAYARIESPKGELGFYLVSDGSER 329 Query: 493 ISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 Y+ PS N P G VAD VV + S D Sbjct: 330 PYRYKVRAPSFINLTP---------LGDMCRGHKVAD------VVVILGSID 366 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R C E V+ G RG+E+++ + +I + I Sbjct: 153 VAVGPVHAGIIEPGHFRFQCAGE-EVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIA 211 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G + H LS +A E I V A+ IR L +HI L+ + + Sbjct: 212 GDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPA 271 Query: 122 ALQADPTKASEMLKGV 137 A L V Sbjct: 272 AYFGRIRGEFLNLLQV 287 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 4 RITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 ++ + PV IE GH R E VV G +G+E + I RI Sbjct: 181 QVPVGPVHAGIIEPGHFRFTMSGE-IVVRMEERLGYTHKGIESLFSGASIDKGMEIAGRI 239 Query: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLS 112 G T +A A E AL I P A++IR ++ +H + Sbjct: 240 SGDSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAIC 291 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 51/394 (12%), Positives = 109/394 (27%), Gaps = 57/394 (14%) Query: 145 PEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRV 204 P + V +G + + + + E L +++L ++ Sbjct: 173 PARGESLHQVPVGPVHAGIIEPGHFRFTMSGEIVVRMEERLGYTHKGIESLFSGASIDKG 232 Query: 205 VALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAV 264 + + G + G A + + LG+ R +I++ + +L V Sbjct: 233 MEIAGRISGDSTVAYAYGYALAVE-EALGISPPPRAEWIRALMAELERMANHFGDVGAIC 291 Query: 265 IAAFYPEWLTRGKGAVNYLSVPEFPTDSKN-------GSFLFPGGYIENADLSSYRPITS 317 A +P LS + G L + Sbjct: 292 NDAAFP----------RILSRCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNAEGL 341 Query: 318 HSDEYLIKGIQESA--KHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTV 375 L++ I+E +Y + + D + V Sbjct: 342 SRIRELLETIKEEVVCLKDFYDSK--------------NSLQDRTVGTGVLDRRLAELFG 387 Query: 376 EVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCEL 435 G + + R++ K + ++ + + R+ R + + Sbjct: 388 AGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVLEDG-------DVNARVWIRILEIEQS 440 Query: 436 QDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISN 495 +L+ + + I G KG+ +E+ RG + W+ I +G I Sbjct: 441 VKLLEQILEGMPPG-------SICAERIGGEGSGKGLSVVESFRGDILTWIEIYNGKIIR 493 Query: 496 YQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 PS + E+ +VG +AD Sbjct: 494 CHPRDPSWF---------QWPLLEKVIVGGVIAD 518 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 82/266 (30%), Gaps = 12/266 (4%) Query: 3 QRITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++ + PV IE GH R E V + RG+E++ + +DP + + Sbjct: 173 YQVPVGPVHAGIIEPGHFRFSVIGET-VFNLEIRLFYTHRGIEKLAEGKDPAACVRVAEA 231 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF-YQLSALDWVD 118 + G + +A A E I VP A +IR ++ + H+ L+ + + Sbjct: 232 VSGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFAL 291 Query: 119 ITSALQADPTKASEMLKGVSTWHLNSPEEFT-KVQNKIKDLVASGQLGIFANGYWGHPAM 177 S + + +S + I + A A Sbjct: 292 GASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRAG 351 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDG 231 + + Q ++ + + G G ++ + G+ + Sbjct: 352 LAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPVP 411 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQV 257 + + + L ++ D + + Sbjct: 412 HPLNDGDVLARFTVKAAEVLDSLSLI 437 Score = 68.0 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 16/130 (12%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 GP+A R + + + + L R + + Sbjct: 382 TGPVARASGSGRDVRVDSPYGMYDRFIPVPHPLNDG-------DVLARFTVKAAEVLDSL 434 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 +++ + + + G+ + +E PRG W+ I++G + Y Sbjct: 435 SLIEKVIAGMPEGPVI---------SADGVGDGAALALVEGPRGENLCWVEIREGRVFRY 485 Query: 497 QAVVPSTWNS 506 + S N Sbjct: 486 KVRTASYCNW 495 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 2/121 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ + VVS+A G + R E+I +N PR R+ + L Sbjct: 48 HGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPYTDRMDYLAGMNMNLGW 107 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E ++ D+P A+++R II + H+V LD + L A + Sbjct: 108 ALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTY-GLDLGSFSPFLYAFRERERI 166 Query: 133 M 133 + Sbjct: 167 L 167 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 18/128 (14%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIY--------------QKLTGNTLEVAQLHSTLG 423 GP+ R + + + A Y A L Sbjct: 246 GPVLRGSGVDYDLRRDGEERYTSLYAGYAFEVIVEKNGSYPRDHEYPPVPSDAVLGDCWH 305 Query: 424 RIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLS 483 R R + + D+L+ G + +P + E PRG + Sbjct: 306 RFYVRMLEVIQAIDLLRQGIEKYSQATGDWGTPIKLATKLPK---GEAYLETECPRGQMG 362 Query: 484 HWMVIKDG 491 + ++ DG Sbjct: 363 -FYIVSDG 369 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 2/161 (1%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G RI +++ + G RG E++ + + RI + + + Sbjct: 243 HGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPY 302 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 V A E IDVP IR ++ + H+++ D +T A + Sbjct: 303 VLAVEKLAGIDVPERVMTIRVMLSELFRINSHLLYISTFI-QDVGAMTPVFFAFTDRQKI 361 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWG 173 + + ++ DL Q + W Sbjct: 362 YDIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQEFLDWM 402 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 97/292 (33%), Gaps = 16/292 (5%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R E +++ RG+E++ +D I + I Sbjct: 175 VGVGPVHAGIIEPGHFRFSAIGEP-ILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGIS 233 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF-YQLSALDWVDIT 120 G + + + A E + P A+ +R I+L + H+ L+ + + Sbjct: 234 GDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVGA 293 Query: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVAS--GQLGIFANGYWGHPAMK 178 ++L A + K ++ + +KD+ +L + + G + + Sbjct: 294 ASLSALREELMRWNKRLT--GSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQ 351 Query: 179 LPPEVNLIAVAHYLQA-------LECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG 231 + + +V + L + V A G+ + G ++ Sbjct: 352 VEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKL 411 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYL 283 + + + + + ++ + + K + A Y L G L Sbjct: 412 PVLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAIPLKPVNGYSLVL 463 Score = 65.7 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 72/505 (14%), Positives = 146/505 (28%), Gaps = 71/505 (14%) Query: 38 WRGMEE-----IVKNRDPRDAWMIVQR----ICGVCTTTHALSSV-RAAESALNIDVPVN 87 +RG + I + R+ +I++R + + + R + N Sbjct: 63 FRGYQGLSLLYIFEKRNYSGTLVIIRRADSPVSSIAAIFPSACYFEREIRDGYGCEF-EN 121 Query: 88 AQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEE 147 A R + L + + A + + +L A + + + S E Sbjct: 122 AFDRRRLFLHETYPAN-----FHPLANSFKNQPLSLPAGVE-----NEALYPFKKISGEG 171 Query: 148 FTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP---EVNLIAVAHYLQALECQRDANRV 204 +V V GI G++ A+ P EV L L+ L +D + Sbjct: 172 VYEVG------VGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFG 225 Query: 205 VALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAV 264 + + G + ++ + R ++ + ++ + + + Sbjct: 226 LKIAEGISGDESAANTYAYSSAVEH-ICSSRPPRRAEQLRLILLEMERLYSHLADLSGML 284 Query: 265 IAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLI 324 YP G +++ L + + F G I L P Sbjct: 285 TDVGYP----VGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGE-------- 332 Query: 325 KGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANML 384 I E A + + + + A D + + + + G A Sbjct: 333 -LITELADYLY--AFEGRFSEQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARAS 389 Query: 385 VKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYS 444 E+ +LN+ Y +L+ L V + R R ++ + Sbjct: 390 G------EAIDTRLNQPYGFYPELS-FKLPVLPEGDVMARFRVRLSEVQTSLGLILKTAA 442 Query: 445 ALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTW 504 L + +E+PRG HW+ ++DG I Y+ S Sbjct: 443 KLSAG---------EYAIPLKPVNGYSLVLVESPRGQSLHWLWLRDGKIERYKVRTASYC 493 Query: 505 NSGPRNFNDDVGPYEQSLVGTPVAD 529 N E +++G + D Sbjct: 494 NW---------QAIEHAVLGDIIPD 509 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 80/264 (30%), Gaps = 19/264 (7%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + PV IE GH R E V++ G + +G+E++ RDP + R+ Sbjct: 173 IPVGPVHAGIIEPGHFRFLALGET-VLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVS 231 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALD------ 115 G T HA ++ +A E A + P A ++R I + +H+ + Sbjct: 232 GDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDTAFAFGH 291 Query: 116 ---------WVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI 166 W+ ++ G L + +L Sbjct: 292 SQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSELEELKP 351 Query: 167 FANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 + + V + L L A + + + PH +G A Sbjct: 352 ILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRLGVKAVT 411 Query: 227 INLDGLGVLNLERLMYIKSFIDKL 250 + R + + +D L Sbjct: 412 RGDGDVAARLYVRYEELLASLDIL 435 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 24/150 (16%) Query: 381 ANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQ 440 A RE + + + + G+ R+ R DIL Sbjct: 384 ARACGIGRDVRERAPHAPYDRLGVKAVTRGDG-------DVAARLYVRYEELLASLDILD 436 Query: 441 NQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAV 499 + + D T +G+G +E RG ++ ++ G I + Sbjct: 437 QCLRRIEPGPLRADWRT-------PPANAEGLGLVEGWRGEIATYVRFDGAGSIVRFFPR 489 Query: 500 VPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 PS +N E+ ++G V D Sbjct: 490 DPSVFNW---------PALEKLILGNIVPD 510 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 6/152 (3%) Query: 3 QRITIDP-VTRIEGHLRIDCEIEN-GVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQR 59 ++I I P + +E + ++++ +V +G + RG+E + ++ ++ +R Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLILTER 61 Query: 60 ICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDI 119 +C +C+ H S A E I+V A Y+R I ++ + LS L + Sbjct: 62 LCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNM---FNLSMLAHLVH 118 Query: 120 TSALQADPTKASEMLKGVSTWHLNSPEEFTKV 151 L D E+++ V + + + V Sbjct: 119 DYELMRDTMDTREIMQDVKETIWGNRMDLSAV 150 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 47/397 (11%) Query: 155 IKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPH 214 I +AS + I+ + E+ V L+AL Q++ + + +L + Sbjct: 6 IGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNL-ILTERLCA 64 Query: 215 IQNLAVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLT 274 + + + +R Y++ D++ ++ + E + Sbjct: 65 LCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYELMR 124 Query: 275 RGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS 334 + + ++ G+ + + S ++ I+ Sbjct: 125 DTMDTREIM---QDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDKL 181 Query: 335 WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGREST 394 + E + + + S GP+A R Sbjct: 182 F---ERFCNSEKIKKTKGIGVLTKQQALEFGVS----------GPVARGSGINNDVRVKA 228 Query: 395 QNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGD 454 + + + L + R+ R IL+N + L G Sbjct: 229 PYAAYDELEVRVDLESDG-------DVYSRMKVRWYDIKNAIKILKNAINNLP----SGP 277 Query: 455 HTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDG-IISNYQAVVPSTWNSGPRNFND 513 +P+IPA + EAPRG L +++ G + VP+ N Sbjct: 278 IHLEKRPHIPA---GEATVRTEAPRGELIYYVKTDGGQKPKRMRWRVPTYMNF------- 327 Query: 514 DVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACA 550 E+ + G +D VV ++S DPC++C Sbjct: 328 --QALEEMIKGNRASD------VVLILNSIDPCVSCT 356 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 2/149 (1%) Query: 14 EGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR+ E+ +V K G + RG E++++ + A R+ V + + Sbjct: 92 HGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAY 151 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E LNI P AQ+IR + +HI+ ALD +T + Sbjct: 152 SLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAV-TTHALDLGAMTPFFWLFEEREKM 210 Query: 133 MLKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 + + +DL Sbjct: 211 FEFYERVSGARMHAAYIRPGGVHQDLPLG 239 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R E +++ + RG+E++ +N+ + +RI Sbjct: 174 VPVGPVHAGIIEPGHFRFSVAGEP-IINLEAKLYYVHRGLEKLCENQHYMKVLLFSERIS 232 Query: 62 GVCTTTHALSSVRAAESALNID-VPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 G T T++L+ +A E I +P A Y R + H+ L Sbjct: 233 GDETFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFP 292 Query: 121 SALQADPTKASEML 134 S A + ++L Sbjct: 293 SGQFAMMRRWIQLL 306 Score = 65.7 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 14/143 (9%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP R+ + N R+ + E Sbjct: 382 VGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHSN-------CDVNCRMNVKIEEVIESI 434 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVI-KDGIISN 495 +I++ + +KP G E+PRG H+++ ++ I Sbjct: 435 NIIKQVLEKMPEEGPVSVDIGELKPYSY------AFGMTESPRGENLHFVMTGENNTIFR 488 Query: 496 YQAVVPSTWNSGPRNFNDDVGPY 518 Y+ PS N + Sbjct: 489 YKVRTPSFCNWPALCHAVNTNTL 511 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 13/266 (4%) Query: 4 RITIDPVTR-IEGHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRIC 61 RI + P+ G LR+ +++ + G + RG+E++++NR + +++ Sbjct: 27 RINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRMYMQSPSYTEKLD 86 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 V V E AL +V A+Y R II+ H+ L D + + Sbjct: 87 YVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGALCN-DIGQMFT 145 Query: 122 ALQADPTKASEMLKGVSTWHLNSP----EEFTKVQNKIKDLVASGQLGIFANGYWGHPAM 177 + +LK + + + + D + + Sbjct: 146 MFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTEYIEYKVKGY 205 Query: 178 KLPPEVNLIAVAHYLQALECQRDANRVVALLG------GKTPHIQNLAVGGVANPINLDG 231 K + N I + + L G G ++ + + Sbjct: 206 KDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYYAYDRLKFKV 265 Query: 232 LGVLNLERLMYIKSFIDKLSDFVEQV 257 + K +++ + ++ + Sbjct: 266 PTSNAGDGYARYKMRYEEIFESIKII 291 Score = 48.3 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 34/152 (22%), Gaps = 18/152 (11%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP R+ + + + + R R E Sbjct: 237 GPNLRASGVEYDVRKEYPYYAYDRLKF-------KVPTSNAGDGYARYKMRYEEIFESIK 289 Query: 438 ILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQ 497 I++ + + +K P + E PRG +MV + Sbjct: 290 IIRQALDKMPRDNDVVGLP--IKLIGPEAKPDIVINHHELPRGEGIIYMVPDKQKPYRIR 347 Query: 498 AVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 P + E G AD Sbjct: 348 LRSP---------VFISLSALEHICKGAKFAD 370 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 25/269 (9%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 + + PV IE GH R C E V + G RG+E+++ N ++ I Sbjct: 152 VAVGPVHAGVIEPGHFRFQCHGEQ-VFHLEISLGYQHRGIEQLLLNGPHPQTLRQMEAIA 210 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSAL------- 114 G + H L+ ES P A +R I L +H ++ Sbjct: 211 GDTSIGHGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIAGDVGYLPTA 270 Query: 115 --------DWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGI 166 D++++++ + + G + + L+ + ++QN++ +L Sbjct: 271 SFCGRIRGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQR-EELQNRL--ATGRAELTS 327 Query: 167 FANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 W P++ E + A + A R L P Sbjct: 328 AIELLWNTPSVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIYRMAQVP 387 Query: 227 I---NLDGLGVLNLERLMYIKSFIDKLSD 252 I + + + R + +D + Sbjct: 388 IATAHHGDVCSRSSVRWEECQKSLDFCVE 416 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 44/346 (12%), Positives = 81/346 (23%), Gaps = 46/346 (13%) Query: 186 IAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLMYIKS 245 + L + ++ A+ G ++ G + ++ Sbjct: 188 RGIEQLLLNGPHPQTLRQMEAIAGD-----TSIGHGLAYCMVLESLSKSHPPATAHALRG 242 Query: 246 FIDKLSDFVEQVYKVDTAVIAAFYPEWLTR-GKGAVNYLSVPEFPTDSKNGSFLFPGGYI 304 +L + Y + G+ ++L++ F S+ G L G Sbjct: 243 IALELERLANHTGDLGAIAGDVGYLPTASFCGRIRGDFLNMSAFICGSRFGRGLLKPGGT 302 Query: 305 ENADLSSYRPITSHSDEYLIKGIQESAKHSWYKDEAPQAPWEGTTIPAYDGWSDDGKYSW 364 + R + + + + W T G S Sbjct: 303 VFGLDQAQREELQNRLATGRAELTSAIELLW------------NTPSVMSRLEGTGVVSA 350 Query: 365 VKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGR 424 + VGP A R + + + A R Sbjct: 351 ESAVEMG----LVGPAARACGLKRDVRSDYPFGIYRM-------AQVPIATAHHGDVCSR 399 Query: 425 IIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSH 484 R C + D Q L + P G+ V E RG + H Sbjct: 400 SSVRWEECQKSLDFCVEQLRQLPKGAHAAELK-------PLQGDQLTVALTEGWRGEICH 452 Query: 485 WMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVAD 529 + G Y+ PS N +L ++D Sbjct: 453 LAITDSAGRFRQYKITDPSFHNW---------QGLAMALRNEQISD 489 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 2/143 (1%) Query: 17 LRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSVRA 75 LR+ ++ + KA G + G E++ ++ D IV R+ + + + Sbjct: 36 LRLILTLDGETIVKAVPDIGYLHSGFEKLGEDLDFNQYVTIVDRMNYISPFANECAWFTT 95 Query: 76 AESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEMLK 135 E + I++ +Y+R I+ DH++ +ALD +T L A + Sbjct: 96 VEKLIGIELTPRCKYLRTILAELARISDHLLCVGA-AALDLGALTGFLYAFNAREKVYNI 154 Query: 136 GVSTWHLNSPEEFTKVQNKIKDL 158 + + +V + D+ Sbjct: 155 MEAASGQRFHPSYCRVGGLMADV 177 Score = 44.5 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 45/189 (23%), Gaps = 38/189 (20%) Query: 378 GPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQD 437 GP+A + R+ + ++ + + R + R E Sbjct: 231 GPVARASGVVRDLRKDEPYLAYKELS-----GAFKIVCGKGGDCYNRYLVRMGEMLESWK 285 Query: 438 ILQNQYSALITNIGKGD--HTTFVKPNIPATGEFKG---------------------VGF 474 I+ L + D + +G G Sbjct: 286 IINAAVENLPSGPVNVDLNDKLTIPDKNATYRSIEGLIQHFELFMWNRRWETPVEEVYGA 345 Query: 475 LEAPRGML-SHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKP 533 E G L + + G + PS + + + G ++D Sbjct: 346 NETANGELGFYLVADGTGKAFRARTRPPSFIHFA---------VFPMMMEGHQISDVPAV 396 Query: 534 LEVVRTIHS 542 L + I + Sbjct: 397 LGSLNIIAA 405 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 7/166 (4%) Query: 5 ITIDPVTR--IE-GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 I + PV IE GH R C E +V G +G+E + + P A + R+ Sbjct: 174 IPVGPVHAGTIEPGHFRFTCLGEQ-IVQLEERLGYCHKGIERLFVGQPPDAALRLAGRVS 232 Query: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 G + +A S A ES I++ A +R + L +H+ L + Sbjct: 233 GDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGALGND--AGLAF 290 Query: 122 ALQADPTKASEMLKGVSTWHLNSP-EEFTKVQNKIKDLVASGQLGI 166 AL E+L+ + + + ++ DL I Sbjct: 291 ALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHI 336 Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 8/126 (6%) Query: 383 MLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQ 442 M + + +A+ R R +N Sbjct: 380 MAGLSGRASGQAWDLRTHFAPPPYDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENV 439 Query: 443 YSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPS 502 + L + F + +G+G E RG + + ++DG I+ PS Sbjct: 440 VANLPGGSPRVALKAF-------PKDGEGLGICEGWRGEVFVALRLEDGHIARCHPHDPS 492 Query: 503 TWNSGP 508 W+ P Sbjct: 493 -WSLWP 497 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 2/148 (1%) Query: 15 GHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73 G +R+ +++ + G RG E+I + + RI + L + Sbjct: 194 GVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYIPYTDRIDYLGGVAGELPYL 253 Query: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASEM 133 E+ I+VP A+ +R ++ H+V F ++ + + A A + Sbjct: 254 LGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITH-NLGGMAPAFYAFTEREKIF 312 Query: 134 LKGVSTWHLNSPEEFTKVQNKIKDLVAS 161 F ++ +DL Sbjct: 313 DVIELICGGRMHPAFFRIGGVSQDLPDG 340 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 35/167 (20%), Gaps = 33/167 (19%) Query: 358 DDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQ 417 + YS + + GP R+ E + + Sbjct: 375 NIAVYSQSMALDWG----LTGPNLRATGINFDMRKDFPYMGYEDYDFDVPVGQDG----- 425 Query: 418 LHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFVKPNIPATG---------- 467 R + R E I++ + + D+ Sbjct: 426 --DAYTRTVLRVQEVVESLKIIRQAAARMPEGPILADNAPSFGFPRKQNALRDIETLIHS 483 Query: 468 ---EFKGVGF--------LEAPRG-MLSHWMVIKDGIISNYQAVVPS 502 +G F E +G H + G + PS Sbjct: 484 FVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPS 530 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 38/331 (11%), Positives = 82/331 (24%), Gaps = 20/331 (6%) Query: 14 EGHLRIDCEIENGVVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSS 72 G LR + ++ KA G + R +E+I + R+ + + Sbjct: 35 HGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGERCTYSGFMPYTDRVDYIAAMFANEAW 94 Query: 73 VRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASE 132 A E + I+VP AQY+R I + H++ ++ V + + Sbjct: 95 ASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMD--VGAVTPFPWALREREY 152 Query: 133 MLKGVSTWHLN----SPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAV 188 + + + V + A +N I + Sbjct: 153 INDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIMVEFDRLISLNDIFI 212 Query: 189 AHYLQALECQRDANRVVALLG-----------GKTPHIQNLAVGGVANPINLDGLGVLNL 237 + + L+G + ++ + G Sbjct: 213 KRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELEFDVPVGRGRYGTVG 272 Query: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSF 297 + +++ + +PE GK E ++ Sbjct: 273 DCWDRFYVRVEECRE--SAKILRQALDKIDEHPEDDILGKLPKKMRPDGEAYARIESARG 330 Query: 298 LFPGGYIENADLSSYRPITSHSDEYLIKGIQ 328 I +YR + I+ Sbjct: 331 DMGCYVIGRGAEEAYRARFRTGSFTAMAMIE 361 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 47/168 (27%), Gaps = 19/168 (11%) Query: 377 VGPLANMLVKLAAGRESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQ 436 VGP R+ + + + + R R C E Sbjct: 232 VGPNLRGSGVKWDLRKEDAYSVYPELEFDVPVGRGRYGT--VGDCWDRFYVRVEECRESA 289 Query: 437 DILQNQYSALITNIGKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNY 496 IL+ + + + K + + +E+ RG + ++ I G Y Sbjct: 290 KILRQALDKIDEH---PEDDILGKLPKKMRPDGEAYARIESARGDMGCYV-IGRGAEEAY 345 Query: 497 QAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFD 544 +A + G + + + ++V I SFD Sbjct: 346 RARFRT-------------GSFTAMAMIEAKSPGLFLADLVALIASFD 380 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 27/264 (10%) Query: 8 DPVTRIEGHLRIDCEIENGVVSK-AWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTT 66 P G +R+ + K G +WR +E + + +D + V+RIC + Sbjct: 186 GPTHPASGPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVAVERICFMDNP 245 Query: 67 THALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI-----------VHFYQLSALD 115 + +A E ++ A+Y+R I+ H+ +H + + LD Sbjct: 246 NPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLD 305 Query: 116 ----WVDITSALQADPTKASEMLKGVSTWHLNSPE-EFTKVQNKIKDLVASGQ--LGIFA 168 ++D+ + + G + LN + F + IK + IF Sbjct: 306 IREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFM 365 Query: 169 NGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPIN 228 + K L VA Y A R G ++ + + Sbjct: 366 KNPLMNTRAKGNGVFTLDDVAEYYLAGPIARA--------SGAKIDVRIDEPYAAYDKLE 417 Query: 229 LDGLGVLNLERLMYIKSFIDKLSD 252 ++ N + + +L Sbjct: 418 MEYATCENGDARDRLYIIFKELEQ 441 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 38/353 (10%), Positives = 82/353 (23%), Gaps = 37/353 (10%) Query: 167 FANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANP 226 N HPA + + R + L + I + V Sbjct: 182 VLNWGPTHPASGPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVA--VERI 239 Query: 227 INLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGK-----GAVN 281 +D + + ++++F + +V ++ G G Sbjct: 240 CFMDNPNPMICYSQAVEEIAGKEITEF-AKYMRVILGETGRIASHLISLGGFFGTMGLHT 298 Query: 282 YLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS--WYKDE 339 ++ + G + + K E + ++D Sbjct: 299 FMMWCLDIREYFLDVLEDYSGARIATACVEPGGVRYPLN--DYKAWFEGINKAIKKFEDT 356 Query: 340 APQAPWEGTTIPA-YDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 P +G ++ + GP+A R Sbjct: 357 KADITDIFMKNPLMNTRAKGNGVFTLDDVAEY----YLAGPIARASGAKIDVRIDEPYAA 412 Query: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 + + + E A + R R + + + + I +G Sbjct: 413 YDKLEM---------EYATCENGDARD--RLYIIFKELEQAMDLIKQAMAKIEEGIEAGE 461 Query: 459 VKPN-------IPATGEFKGVGFLEAPRGM-LSHWMVIKDGI-ISNYQAVVPS 502 + P + V +E RG L H + + + PS Sbjct: 462 MDPKKDHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEKSTSPYRLKIKAPS 514 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.117 0.322 Lambda K H 0.267 0.0356 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,793,701,487 Number of Sequences: 3077464 Number of extensions: 109445644 Number of successful extensions: 289248 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 821 Number of HSP's successfully gapped in prelim test: 113 Number of HSP's that attempted gapping in prelim test: 285243 Number of HSP's gapped (non-prelim): 1798 length of query: 567 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 433 effective length of database: 628,016,180 effective search space: 271931005940 effective search space used: 271931005940 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 95 (41.4 bits)