BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (65 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39901 Putative uncharacterized protein ybfI n=1 Tax=Es... 135 3e-31 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 93 2e-18 UniRef50_D0KIR4 Two component transcriptional regulator, winged ... 82 7e-15 UniRef50_C6BG23 Two component transcriptional regulator, winged ... 66 4e-10 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 64 1e-09 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 64 2e-09 UniRef50_D1VGE4 Two component transcriptional regulator, winged ... 63 3e-09 UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Ta... 59 4e-08 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_Q39SW2 Two component transcriptional regulator, winged ... 56 3e-07 UniRef50_B0T7K3 Two component transcriptional regulator, winged ... 56 4e-07 UniRef50_Q39AE7 Two component transcriptional regulator, winged ... 55 6e-07 UniRef50_B0SY74 Two component transcriptional regulator, winged ... 55 7e-07 UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteo... 55 8e-07 UniRef50_C1ABQ2 OmpR family two-component response regulator n=1... 54 1e-06 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 54 2e-06 UniRef50_Q392X6 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_B8IF93 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_Q2J7U7 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 52 5e-06 UniRef50_D2R313 Two component transcriptional regulator, winged ... 52 5e-06 UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID... 52 6e-06 UniRef50_A8L9L0 Two component transcriptional regulator, winged ... 52 7e-06 UniRef50_D1C556 Two component transcriptional regulator, winged ... 52 9e-06 UniRef50_Q2GBD9 Two component transcriptional regulator, winged ... 51 1e-05 UniRef50_A9F790 Two component system transcriptional regulatory ... 51 1e-05 UniRef50_B5EH76 Two component transcriptional regulator, winged ... 50 2e-05 UniRef50_UPI00016A55B6 two component transcriptional regulator, ... 50 2e-05 UniRef50_B5EL18 Two component transcriptional regulator, winged ... 50 3e-05 UniRef50_Q30T71 Two component transcriptional regulator, winged ... 49 4e-05 UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicu... 49 6e-05 UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH do... 49 7e-05 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 49 7e-05 UniRef50_A9AWE4 Two component transcriptional regulator, winged ... 48 1e-04 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 47 1e-04 UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacter... 47 1e-04 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 47 2e-04 UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bd... 47 2e-04 UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus... 47 2e-04 UniRef50_C1AAN0 OmpR family two-component response regulator n=1... 46 3e-04 UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acid... 46 3e-04 UniRef50_C5SPS9 Two component transcriptional regulator, winged ... 46 4e-04 UniRef50_A4WZ32 Transposase and inactivated derivatives-like pro... 46 4e-04 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 46 5e-04 UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospiri... 45 5e-04 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 45 6e-04 UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 5119... 45 7e-04 UniRef50_D1CGU9 Two component transcriptional regulator, winged ... 45 8e-04 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 45 0.001 UniRef50_D1C683 Two component transcriptional regulator, winged ... 44 0.001 UniRef50_D1CB22 Two component transcriptional regulator, winged ... 44 0.001 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 44 0.001 UniRef50_A9KJX4 Two component transcriptional regulator, winged ... 44 0.002 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 44 0.002 UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogan... 44 0.002 UniRef50_C1ACD7 OmpR family two-component response regulator n=1... 44 0.002 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 44 0.002 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 44 0.002 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 44 0.002 UniRef50_Q01N64 Two component transcriptional regulator, winged ... 44 0.002 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 44 0.002 UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus... 43 0.002 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 43 0.003 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 43 0.003 UniRef50_UPI000185BED4 KDP operon transcriptional regulatory pro... 43 0.004 UniRef50_B4RHL6 Response regulator(With CheY-like receiver domai... 42 0.004 UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 42 0.005 UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostri... 42 0.006 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 42 0.009 UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=... 41 0.011 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 41 0.011 UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococ... 41 0.013 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 41 0.014 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 40 0.017 UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacte... 40 0.019 UniRef50_Q3ZVW2 DNA-binding response regulator n=4 Tax=Dehalococ... 40 0.019 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 40 0.020 UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.020 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 40 0.022 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 40 0.025 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 40 0.025 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 40 0.025 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 40 0.028 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 40 0.029 UniRef50_C0ZDJ8 Two-component response regulator n=5 Tax=Firmicu... 40 0.032 UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clo... 40 0.033 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 39 0.038 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 39 0.039 UniRef50_A5GA68 Two component transcriptional regulator, winged ... 39 0.039 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 39 0.040 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 39 0.042 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 39 0.046 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 39 0.053 UniRef50_D1B4X3 Response regulator receiver n=2 Tax=Campylobacte... 39 0.055 UniRef50_O31050 ScnR n=3 Tax=Streptococcus RepID=O31050_STRPY 39 0.064 >UniRef50_P39901 Putative uncharacterized protein ybfI n=1 Tax=Escherichia coli K-12 RepID=YBFI_ECOLI Length = 65 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 MIALSVCWQIVRYLCRIRQM GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG Sbjct: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 Query: 61 YRFML 65 YRFML Sbjct: 61 YRFML 65 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 93.2 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 41/49 (83%), Positives = 45/49 (91%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 + Q+ G NA+EHS+YLR YMGHLRQKLEQDPARPRHFITETGIGYRFML Sbjct: 177 LNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 >UniRef50_D0KIR4 Two component transcriptional regulator, winged helix family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIR4_PECWW Length = 204 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 35/48 (72%), Positives = 41/48 (85%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + Q+ G NA+EHS+YLR YMGHLRQKLE DPARPRH +TET IGYRF+ Sbjct: 156 LTQVWGPNAVEHSHYLRIYMGHLRQKLESDPARPRHLLTETAIGYRFI 203 >UniRef50_C6BG23 Two component transcriptional regulator, winged helix family n=69 Tax=Bacteria RepID=C6BG23_RALP1 Length = 234 Score = 65.9 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 28/47 (59%), Positives = 36/47 (76%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G + S+YLR YMGHLR KLE+DPARP H +TE G+GYRF Sbjct: 186 LREVWGPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGYRF 232 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 25/48 (52%), Positives = 37/48 (77%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + G +E S+Y+R YMG+LR+K+E DPARP+H TE G+GYRF+ Sbjct: 181 LKNVWGPGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 35/47 (74%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G + + S YLR YMGHLR KLE DPARP + +TE G+GYRF Sbjct: 183 LREVWGPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEIGVGYRF 229 >UniRef50_D1VGE4 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VGE4_9ACTO Length = 271 Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 35/47 (74%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + ++ G N ++YLR Y+ LRQKLE+DPARPRH +T+ G+GYRF Sbjct: 223 LTEVWGANYGSETHYLRTYLNRLRQKLEEDPARPRHLLTDPGMGYRF 269 >UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Tax=Actinomycetales RepID=C1A1E5_RHOE4 Length = 226 Score = 58.9 bits (141), Expect = 4e-08, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 35/49 (71%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +R++ G ++YLR Y+ LR+KLE DPA P+H ITE G+GYRF++ Sbjct: 178 LREVWGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRFVV 226 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 23/38 (60%), Positives = 30/38 (78%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + YLR Y+G LR+KLE DP+ PRH +TE GIGYRF+ Sbjct: 193 DEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_Q39SW2 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=Q39SW2_GEOMG Length = 233 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 35/47 (74%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +RQ+ G++ +E + LR + +LR+K+E DP+RPRH +TE G+GYR Sbjct: 182 LRQIWGVSHLEQPHVLRVNISNLRRKIEMDPSRPRHILTEPGVGYRL 228 >UniRef50_B0T7K3 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B0T7K3_CAUSK Length = 393 Score = 55.8 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 22/36 (61%), Positives = 29/36 (80%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + YLR ++G +RQKLE DP+RP+ +TE GIGYRFM Sbjct: 356 TQYLRVFVGQVRQKLEADPSRPKIILTEAGIGYRFM 391 >UniRef50_Q39AE7 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. 383 RepID=Q39AE7_BURS3 Length = 232 Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 22/35 (62%), Positives = 30/35 (85%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++YLR Y+GHLR+KLE+DP RP + +TETG+GYR Sbjct: 194 AHYLRVYVGHLRRKLERDPRRPAYILTETGVGYRL 228 >UniRef50_B0SY74 Two component transcriptional regulator, winged helix family n=2 Tax=Caulobacter sp. K31 RepID=B0SY74_CAUSK Length = 235 Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 22/38 (57%), Positives = 29/38 (76%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + YLR ++G LRQKLE DP+ PR +TE GIGYRF+ Sbjct: 196 QDTQYLRVFVGQLRQKLEADPSTPRMILTEPGIGYRFI 233 >UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteobacteria RepID=A9VZA6_METEP Length = 248 Score = 55.1 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 31/52 (59%) Query: 12 RYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + L + M ++ YLR YM LRQKLE DP RPR +TETG+GYR Sbjct: 171 KVLTHAQLMNEVSVSSDPQYLRVYMRQLRQKLEADPERPRILLTETGVGYRL 222 >UniRef50_C1ABQ2 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABQ2_GEMAT Length = 233 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 22/33 (66%), Positives = 26/33 (78%) Query: 31 YLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 YLR Y+GHLR+KLE DP RP +TE G+GYRF Sbjct: 197 YLRVYIGHLRRKLEVDPLRPTLIVTEGGVGYRF 229 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 21/38 (55%), Positives = 32/38 (84%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + S+YLR Y+ +LRQK+E+DP+ PR+ +TE G+GYRF+ Sbjct: 194 DESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 32/47 (68%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + G ++ + YLR Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 176 LKGVWGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222 >UniRef50_Q392X6 Two component transcriptional regulator, winged helix family n=29 Tax=Bacteria RepID=Q392X6_BURS3 Length = 250 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 34/48 (70%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + ++ G++ + ++Y+R YM +LRQKLE PARPRH +TE GYR + Sbjct: 182 LAEVWGIHDADRAHYVRVYMTNLRQKLEPVPARPRHLLTELQFGYRLV 229 >UniRef50_B8IF93 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=B8IF93_METNO Length = 229 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 2/47 (4%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G A+ YLR Y+ LRQK+E DP RPR+ +TETG+GYR Sbjct: 181 LREIWG--AVADPQYLRVYVRQLRQKIEPDPERPRYILTETGVGYRL 225 >UniRef50_Q2J7U7 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=Q2J7U7_FRASC Length = 272 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V + I Q+ G + S+ LR Y+ LR+KLE DP RPR+ TE G+GYR+ Sbjct: 216 KLVSHQQLISQVWGPGVADDSSSLRLYINKLRRKLEPDPTRPRYLTTEPGLGYRY 270 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 22/37 (59%), Positives = 28/37 (75%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++YLR YM LR+KLE DPA PR+ TE GIGYR ++ Sbjct: 188 THYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVV 224 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 34/48 (70%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + G E +Y+R +M +LR+K+E++ + PRH ITE GIGYRF+ Sbjct: 180 LKAIWGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFV 227 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 35/47 (74%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G + ++YLR ++ LR+K+E DPARP++ +TE G+GYRF Sbjct: 186 LREVWGPQDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID=C2BL33_9CORY Length = 237 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 28/37 (75%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 S+YLR Y LR+KLE DP+ P++ +TE G+GYRF+ Sbjct: 196 QSHYLRIYTSQLRRKLETDPSNPQYLLTEPGLGYRFI 232 >UniRef50_A8L9L0 Two component transcriptional regulator, winged helix family n=11 Tax=Actinomycetales RepID=A8L9L0_FRASN Length = 236 Score = 51.6 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 11/67 (16%) Query: 8 WQIVRYLCR-----------IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITE 56 W+++ L R + Q+ G ++ LR Y+ LR+KLE DP RPRH TE Sbjct: 168 WRLLEALVRNPGKLVSSRALVSQVWGPAYAADTSSLRLYINRLRRKLEPDPTRPRHLTTE 227 Query: 57 TGIGYRF 63 G+GYR+ Sbjct: 228 PGMGYRY 234 >UniRef50_D1C556 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C556_SPHTD Length = 240 Score = 51.6 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 20/31 (64%), Positives = 25/31 (80%) Query: 31 YLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 YLR YM +LRQKLE++P RP H +TE G+GY Sbjct: 198 YLRTYMRYLRQKLERNPTRPTHLLTEPGVGY 228 >UniRef50_Q2GBD9 Two component transcriptional regulator, winged helix family n=2 Tax=Sphingomonadales RepID=Q2GBD9_NOVAD Length = 229 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%) Query: 24 NAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 N+ YLR YMG LRQKLE++P+ P +TE G+GYR ++ Sbjct: 184 NSTADLQYLRVYMGLLRQKLEENPSEPELIVTEPGLGYRLIV 225 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 22/36 (61%), Positives = 26/36 (72%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++YLR YM LR KLE+DPARP ITE G+GYR Sbjct: 196 QAHYLRVYMAQLRHKLERDPARPLILITEPGVGYRL 231 >UniRef50_B5EH76 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=B5EH76_GEOBB Length = 246 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++Q+ G+ +E N LR + +LRQK+E DP+RP + TE G+GYR Sbjct: 197 LKQIWGVAYVEQQNVLRVNIRNLRQKIEPDPSRPFYITTEVGVGYRL 243 >UniRef50_UPI00016A55B6 two component transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A55B6 Length = 197 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 34/48 (70%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + ++ G++ + ++Y+R YM +LRQKLE+ PA PR+ +TE GYR + Sbjct: 138 LAEVWGVHDADRAHYVRVYMTNLRQKLEETPATPRYLLTELQFGYRLV 185 >UniRef50_B5EL18 Two component transcriptional regulator, winged helix family n=3 Tax=Acidithiobacillus RepID=B5EL18_ACIF5 Length = 247 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 37/55 (67%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ Y + + G ++ + ++Y+R Y+ LR+K+E DP P++ +TE G+GYRF Sbjct: 186 RILSYRRILGAVWGEHSSDQAHYVRLYIKRLREKIEDDPGMPQYLVTEKGVGYRF 240 >UniRef50_Q30T71 Two component transcriptional regulator, winged helix family n=2 Tax=Campylobacterales RepID=Q30T71_SULDN Length = 229 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++++ G+ YLR Y+ LR+K+EQ+ RP + TE+GIGYRF Sbjct: 179 LKEVWGVGYQSEMQYLRTYVNTLRKKIEQNSTRPTYIKTESGIGYRF 225 >UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9Y2I0_9FIRM Length = 239 Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%) Query: 12 RYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 RYL I + G E + LR M LR+K+E++PA+PR+ +TE G+GYR + Sbjct: 180 RYL--ISAIWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLV 230 >UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH domains) n=8 Tax=Bacteria RepID=B3E0R0_METI4 Length = 240 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++++ G ++ +YLR YM LR+K+E++ +P+ +TE GIGYR M+ Sbjct: 183 LQEVWGPRGVDQVHYLRVYMARLREKIEENSLQPKLLLTEPGIGYRLMI 231 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 26 IEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + YLR Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 189 LDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYR 225 >UniRef50_A9AWE4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWE4_HERA2 Length = 975 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + ++Q+ G + E YL Y+ LR KLE DP P+ +E+GIGYRFM Sbjct: 174 QVLTHRMLLQQVWGKSYSEDRAYLHAYIRRLRAKLEDDPTNPQLIHSESGIGYRFM 229 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + ++ G E + YLR Y+G LR+KL+ P P+ +TE G+GYRF+ Sbjct: 181 LNRVWGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYRFV 228 >UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacteria RepID=C9XT65_CLODC Length = 232 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+++ G + LR +M LR+K+E+ PA PR+ ITE G+GYR Sbjct: 183 IKEIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRL 229 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +R++ G E ++YLR +G LRQKL D A P + +TE G+G RF+ Sbjct: 220 LREVWGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFI 267 >UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MM81_BDEBA Length = 230 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + + ++ G N++EH++YLR Y+G LR+KL +TE G+GYR + Sbjct: 173 KVVTHRMLLNEVWGPNSVEHTHYLRVYVGGLRKKLHIREELAEIIVTEAGVGYRLL 228 >UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T9H2_RICCO Length = 104 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + Q+ G + I+ ++YLR ++G LR KLE P+ P+ +TE GIGYR Sbjct: 57 LAQVWGPDYIDDTHYLRIHIGRLRAKLEDQPSAPQILLTELGIGYRL 103 >UniRef50_C1AAN0 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAN0_GEMAT Length = 238 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 27/35 (77%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 S +LR ++ HLR+K+E +PA PR +T+ G+GYRF Sbjct: 195 SLHLRVHLTHLRRKIEANPAEPRFIVTDPGVGYRF 229 >UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTZ4_9GAMM Length = 248 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 11/69 (15%) Query: 8 WQIVRYLCR-----IRQMXGLNAI------EHSNYLRNYMGHLRQKLEQDPARPRHFITE 56 +Q++R L R + LNAI EH++Y+R Y+ LR+K+E D + P+ +TE Sbjct: 167 YQLMRILLRNCGTIVPSKRILNAIWGHTHEEHTHYVRIYVQRLREKIESDASLPQFLLTE 226 Query: 57 TGIGYRFML 65 GIGYR ++ Sbjct: 227 LGIGYRLVV 235 >UniRef50_C5SPS9 Two component transcriptional regulator, winged helix family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPS9_9CAUL Length = 235 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++++ G ++ + YLR Y+G +R+KLE P + ++E+GIGYR Sbjct: 181 LKEVWGPAHVDDTQYLRVYIGQVREKLETKPGLSKSIVSESGIGYR 226 >UniRef50_A4WZ32 Transposase and inactivated derivatives-like protein n=5 Tax=Alphaproteobacteria RepID=A4WZ32_RHOS5 Length = 229 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G +H YLR + LR+KLE+DP+ PR E G+GYR Sbjct: 177 LREVWGPAHTDHVEYLRVTVRSLRKKLEEDPSAPRLIQNEPGVGYRL 223 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 21/30 (70%) Query: 34 NYMGHLRQKLEQDPARPRHFITETGIGYRF 63 N+M LR K E DP PRHF+T G+GYRF Sbjct: 201 NFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B309_SULD5 Length = 233 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++++ G+ YLR Y+ LR+K+E RP + TE+ IGYRF Sbjct: 176 LKEVWGVGYQNEMQYLRTYINSLRKKIEDSSTRPEYITTESSIGYRF 222 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + + + G + E S YLR ++G LR+K+E + + R+ +TE IGYRF+ Sbjct: 169 KVVPHRTLLSSVWGADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFI 224 >UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4X4_ACIC5 Length = 238 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 27/34 (79%) Query: 30 NYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +YLR ++ LR+K+E+DP+ P++ +T+ +GYRF Sbjct: 196 DYLRTFVRQLRKKIEEDPSNPKYLLTDAYVGYRF 229 >UniRef50_D1CGU9 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGU9_THET1 Length = 233 Score = 45.1 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++V + +R++ G ++ LR + +R+KL DP PR+ +TE G+GYR M+ Sbjct: 175 KVVTHRMLLREVWGSEQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRLMV 231 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 17/26 (65%), Positives = 21/26 (80%) Query: 39 LRQKLEQDPARPRHFITETGIGYRFM 64 LRQKLE DP P+HF+T G+GYRF+ Sbjct: 209 LRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 24/29 (82%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++G LR+K+E+DPA PR+ +T G+GYRF Sbjct: 197 HIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_D1CB22 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=D1CB22_THET1 Length = 238 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 31/47 (65%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R + G + + ++ ++ +LRQ++E+DPA P+H +T G+GY F Sbjct: 190 MRNVWGYSVAADDSLVKTHIYYLRQRIEEDPAHPKHILTVPGVGYLF 236 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +R + G ++YL+ Y+ HLR+K+E DP +P+ +TE G+GYR + Sbjct: 179 LRAVWGNEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRLL 226 >UniRef50_A9KJX4 Two component transcriptional regulator, winged helix family n=22 Tax=Bacteria RepID=A9KJX4_CLOPH Length = 245 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ Y I ++ G A ++ LR M ++R+K+E +PA P++ TE GIGYR + Sbjct: 175 RVMTYDSIITKIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMI 230 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 20/30 (66%) Query: 34 NYMGHLRQKLEQDPARPRHFITETGIGYRF 63 N++ LR KLE DP PR FIT G GYRF Sbjct: 195 NFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogans RepID=Q72TM3_LEPIC Length = 227 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 IR + G A S LR ++ LR+K+E DP+ P +TE G+GYR + Sbjct: 177 IRHVWGPFAKNESGSLRVHVASLRKKIELDPSSPELLLTEPGVGYRLAI 225 >UniRef50_C1ACD7 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACD7_GEMAT Length = 240 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 27/37 (72%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + ++R ++ HLR+K+E D + PR ITE G+GYRF Sbjct: 200 DFATHVRVHITHLRRKIEPDASMPRLIITEPGVGYRF 236 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 24/29 (82%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ +LR+K+EQDPARP + IT G+GY+F Sbjct: 203 HISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++++ G + + S + ++ HLR KLE D + P+H +T+ G GYRF+ Sbjct: 191 LQKIWGYDLLGSSRIVDIHISHLRDKLEDDSSHPQHILTKRGFGYRFI 238 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 30 NYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +YLRNY+ LR+K+E DP P++ + + GIGY L Sbjct: 195 HYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLAL 230 >UniRef50_Q01N64 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01N64_SOLUE Length = 245 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 32/48 (66%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + ++ GL+ + + N++ LR+ +E++P +PRH +T G+GYRF+ Sbjct: 191 LEEVWGLHEDTDTRAIDNFIVRLRRYVEEEPTKPRHLLTVRGVGYRFV 238 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 G + S + ++ LR+K+E DP+RP H ITE G+GYR + Sbjct: 192 GYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WI76_CHLAA Length = 225 Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++++ G + ++Y++ + LR K+E DP+ PR+ ITE +GYRF Sbjct: 175 VQRVWGPQYTDSTDYVKGVIRRLRVKIEPDPSHPRYIITEPHVGYRF 221 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 23/30 (76%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ HLRQK+E+ P++P H +T G GYRFM Sbjct: 268 HIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 16 RIRQMXGLNAIEHSNYLRNYM-GHLRQKLEQDPARPRHFITETGIGYRFM 64 RI +M G A +N + + + G LR+K+E+DPARP +TE G GY+F+ Sbjct: 180 RIAEMIGRPAGRGNNRMIDVVVGRLRKKVEKDPARPEWILTEHGKGYQFV 229 >UniRef50_UPI000185BED4 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BED4 Length = 247 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 11/69 (15%) Query: 8 WQIVRYLCRIR-----QMXGLNAI------EHSNYLRNYMGHLRQKLEQDPARPRHFITE 56 W I+ YL + R ++ L A+ + +NYLR Y+ LR K+E A ++ TE Sbjct: 176 WDILVYLVQHRGELVTKLELLKAVWGDQYEKETNYLRVYISQLRHKIEPQQAHNKYLRTE 235 Query: 57 TGIGYRFML 65 G+GYR +L Sbjct: 236 VGVGYRMVL 244 >UniRef50_B4RHL6 Response regulator(With CheY-like receiver domain and winged-helix DNA-binding domain) n=4 Tax=cellular organisms RepID=B4RHL6_PHEZH Length = 237 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I + G A + ++R + LRQKLE +P+ PR +TE G+GYR Sbjct: 179 IAAVWGAGAQVDAQFVRVLVAQLRQKLEAEPSAPRLLMTEPGLGYRL 225 >UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 Length = 238 Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 25/33 (75%) Query: 32 LRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 LR +M LR+K+E++P++P++ T GIGYR + Sbjct: 197 LRVFMATLRKKIEKEPSKPKYIQTHIGIGYRML 229 >UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=C0D8Y6_9CLOT Length = 243 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 24 NAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 N+I N + Y+ HLR K+E +P PR+ T G+GY+F + Sbjct: 198 NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTV 239 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 21/29 (72%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ LRQK+E DP+ PRH IT G GY+F Sbjct: 226 HISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=4 Tax=Proteobacteria RepID=Q2NW72_SODGM Length = 241 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPA 48 ++Q+ G A ++S YLR YMGHLR KLE DPA Sbjct: 176 LKQVWGPTA-DNSQYLRIYMGHLRHKLESDPA 206 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 17/28 (60%), Positives = 20/28 (71%) Query: 36 MGHLRQKLEQDPARPRHFITETGIGYRF 63 +G LR+K+E DP PRH IT GIGY F Sbjct: 202 VGRLRRKIEADPKAPRHIITVHGIGYVF 229 >UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWG2_DEHSC Length = 235 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 20 MXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + G N + +N +R Y+ LR+KLE+D PR IT+ GIGY Sbjct: 182 LWGDNYLGAANAMRVYIRRLREKLEEDLKNPRFIITKPGIGY 223 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R + G +A + ++ HLR+KLE +P PRH +T G GYR Sbjct: 202 LRAIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 16/29 (55%), Positives = 21/29 (72%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ HLRQK+E DP PR+ T G+GYRF Sbjct: 203 HIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRC9_9FIRM Length = 222 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 19 QMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ G ++ L ++ LRQK+E DP P+H T G+GY++ Sbjct: 175 QIWGSDSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKY 219 >UniRef50_Q3ZVW2 DNA-binding response regulator n=4 Tax=Dehalococcoides RepID=Q3ZVW2_DEHSC Length = 230 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 S+ ++NY+ LR+K+E+DPA P+ + GIGY Sbjct: 194 SDNIKNYICRLRRKMEEDPANPKIILNHHGIGY 226 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 25 AIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 A +N + ++ LR+K+E+ P PRH IT GIGY+F L Sbjct: 198 ATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFEL 238 >UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH75_EUBSP Length = 227 Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 23/30 (76%) Query: 35 YMGHLRQKLEQDPARPRHFITETGIGYRFM 64 YM LR+KLE+D + P++ +T G+GYRF+ Sbjct: 197 YMNRLRKKLEEDFSNPKYILTVRGLGYRFV 226 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 24 NAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 N+I N + Y+ LR+KLE + P+H +T GIGY+F+ Sbjct: 190 NSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYKFI 230 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 22/31 (70%) Query: 34 NYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 N++ LR KLE++ PRH +T G+GYRF+ Sbjct: 210 NFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 G A+ S + ++ +R+K+E+DPA PR+ T G GYRF L Sbjct: 186 GAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFRL 229 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 G + + N + +M HLR+K+E +P++P + IT G+GY+ Sbjct: 192 GETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 11/67 (16%) Query: 9 QIVRYLCR-----------IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITET 57 Q+++Y C ++ G + +N + ++ LR+K+E+DP+ P + +T Sbjct: 163 QLLQYFCEHPNVVLSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVR 222 Query: 58 GIGYRFM 64 G+GYRF+ Sbjct: 223 GLGYRFI 229 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 11/67 (16%) Query: 9 QIVRYLC----RI-------RQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITET 57 Q+++Y C R+ ++ G+ + SN + ++ LR+K+E+DP+ P + +T Sbjct: 166 QLLQYFCDHPNRVLSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIR 225 Query: 58 GIGYRFM 64 G+GY+F+ Sbjct: 226 GLGYKFV 232 >UniRef50_C0ZDJ8 Two-component response regulator n=5 Tax=Firmicutes RepID=C0ZDJ8_BREBN Length = 235 Score = 39.7 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 G +A N L Y+ LR K+E DP P +T+ G+GYR+ Sbjct: 187 GEDAFFDENTLSVYIKRLRAKVEDDPKNPEFIVTQRGLGYRW 228 >UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=D1PMF3_9FIRM Length = 239 Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+ Y + G + + N L ++ HLR+KLE+ P +PR +T GIGY+ Sbjct: 180 IITYDALCEAVWGQDYYGYENSLNVHIRHLREKLEETPGKPRWLLTVRGIGYKL 233 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 39.3 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 26 IEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 + + N + ++ LRQKLE DP+ P++ +T G+GY+ L Sbjct: 196 VGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLKL 235 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 39.3 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +S+ + ++ LR K+E DP+ PR+ T G+GYRF Sbjct: 199 YSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_A5GA68 Two component transcriptional regulator, winged helix family n=8 Tax=Desulfuromonadales RepID=A5GA68_GEOUR Length = 243 Score = 39.3 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 17 IRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G ++ + L N++ LR+ E DPA+P +F T G+GYRF Sbjct: 184 LESVWGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 18 RQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 R + N IE N + ++ LR+K+E DP+ P+ T GIGY+F+ Sbjct: 185 RNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 G I N + Y+ LR+K+E +P +P + IT G+GYRF Sbjct: 196 GQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 38.9 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 28/37 (75%), Gaps = 2/37 (5%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 EH+ + +++ LR K+E++PA+P++ +T G+GY+F Sbjct: 197 EHT--VNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 G + ++ S + ++ HLR KLE D P H +T G GY+F+ Sbjct: 194 GYDILDTSRIVDIHISHLRDKLEDDSQHPTHLLTVRGFGYKFV 236 >UniRef50_D1B4X3 Response regulator receiver n=2 Tax=Campylobacteraceae RepID=D1B4X3_SULD5 Length = 223 Score = 38.9 bits (89), Expect = 0.055, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 14 LCRIRQMXGLNAIEHSNYLRNY---MGHLRQKLEQDPARPRHFITETGIGYRFM 64 + R + + +I++ + L++ MG +RQK+ DP +PR ++ G+GY+F+ Sbjct: 168 ISREELLLNIGSIKYESSLKSIDVIMGRIRQKIGDDPKKPRFILSVRGVGYKFV 221 >UniRef50_O31050 ScnR n=3 Tax=Streptococcus RepID=O31050_STRPY Length = 232 Score = 38.5 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 GL ++ + L ++ ++R+K+E P++P H IT G+GY+ ++ Sbjct: 189 GLESLGYEKSLMVHIRNIREKIEITPSKPNHLITVKGLGYKLVI 232 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39901 Putative uncharacterized protein ybfI n=1 Tax=Es... 98 8e-20 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 92 6e-18 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 92 6e-18 UniRef50_B0SY74 Two component transcriptional regulator, winged ... 89 3e-17 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 89 4e-17 UniRef50_D0KIR4 Two component transcriptional regulator, winged ... 88 7e-17 UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Ta... 88 7e-17 UniRef50_C6BG23 Two component transcriptional regulator, winged ... 87 2e-16 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 86 4e-16 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 86 4e-16 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 85 5e-16 UniRef50_D2R313 Two component transcriptional regulator, winged ... 85 5e-16 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 85 7e-16 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 84 9e-16 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_B0T7K3 Two component transcriptional regulator, winged ... 84 2e-15 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 83 3e-15 UniRef50_D1VGE4 Two component transcriptional regulator, winged ... 83 4e-15 UniRef50_Q39AE7 Two component transcriptional regulator, winged ... 82 4e-15 UniRef50_A9F790 Two component system transcriptional regulatory ... 82 5e-15 UniRef50_A9AWE4 Two component transcriptional regulator, winged ... 82 6e-15 UniRef50_D1CGU9 Two component transcriptional regulator, winged ... 81 9e-15 UniRef50_Q39SW2 Two component transcriptional regulator, winged ... 81 1e-14 UniRef50_Q2J7U7 Two component transcriptional regulator, winged ... 81 1e-14 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 81 1e-14 UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH do... 81 1e-14 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 80 2e-14 UniRef50_B5EL18 Two component transcriptional regulator, winged ... 80 2e-14 UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID... 80 2e-14 UniRef50_A4WZ32 Transposase and inactivated derivatives-like pro... 80 3e-14 UniRef50_A8L9L0 Two component transcriptional regulator, winged ... 79 3e-14 UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bd... 79 4e-14 UniRef50_Q30T71 Two component transcriptional regulator, winged ... 79 4e-14 UniRef50_C5SPS9 Two component transcriptional regulator, winged ... 79 5e-14 UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospiri... 78 1e-13 UniRef50_C1ABQ2 OmpR family two-component response regulator n=1... 77 1e-13 UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus... 76 3e-13 UniRef50_A9KJX4 Two component transcriptional regulator, winged ... 76 3e-13 UniRef50_B8IF93 Two component transcriptional regulator, winged ... 76 4e-13 UniRef50_UPI00016A55B6 two component transcriptional regulator, ... 76 4e-13 UniRef50_Q392X6 Two component transcriptional regulator, winged ... 75 7e-13 UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acid... 74 9e-13 UniRef50_D1C556 Two component transcriptional regulator, winged ... 74 1e-12 UniRef50_Q2GBD9 Two component transcriptional regulator, winged ... 74 1e-12 UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicu... 74 2e-12 UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteo... 74 2e-12 UniRef50_B5EH76 Two component transcriptional regulator, winged ... 74 2e-12 UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogan... 74 2e-12 UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacter... 73 2e-12 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 72 6e-12 UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 5119... 72 7e-12 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 71 1e-11 UniRef50_C1AAN0 OmpR family two-component response regulator n=1... 69 6e-11 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 66 5e-10 UniRef50_D1CB22 Two component transcriptional regulator, winged ... 64 2e-09 UniRef50_C1ACD7 OmpR family two-component response regulator n=1... 63 3e-09 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 62 7e-09 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 60 2e-08 UniRef50_D1C683 Two component transcriptional regulator, winged ... 59 5e-08 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 57 2e-07 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 52 6e-06 Sequences not found previously or not previously below threshold: UniRef50_D1CH01 Two component transcriptional regulator, winged ... 73 4e-12 UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus... 70 2e-11 UniRef50_B4RHL6 Response regulator(With CheY-like receiver domai... 69 3e-11 UniRef50_B2UQC6 Two component transcriptional regulator, winged ... 69 5e-11 UniRef50_UPI000185BED4 KDP operon transcriptional regulatory pro... 66 2e-10 UniRef50_Q3ZWF6 DNA-binding response regulator n=1 Tax=Dehalococ... 66 4e-10 UniRef50_Q3ZVS3 DNA-binding response regulator n=4 Tax=Dehalococ... 65 7e-10 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 65 8e-10 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 64 1e-09 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 64 1e-09 UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 64 1e-09 UniRef50_C2C899 DNA-binding response regulator KdpE n=9 Tax=Vibr... 64 1e-09 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 64 2e-09 UniRef50_A7K2K9 DNA-binding response regulator KdpE n=19 Tax=Gam... 63 3e-09 UniRef50_C2JNW2 Response regulator n=9 Tax=Enterococcus RepID=C2... 63 3e-09 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 63 3e-09 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 62 4e-09 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 62 4e-09 UniRef50_Q0RNB1 Putative response regulator (Response regulator ... 62 4e-09 UniRef50_C7GCA3 KDP operon transcriptional regulatory protein Kd... 62 5e-09 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 62 5e-09 UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacte... 61 1e-08 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 61 1e-08 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 61 1e-08 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 61 1e-08 UniRef50_B8I014 Two component transcriptional regulator, winged ... 61 2e-08 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 60 2e-08 UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Copr... 60 2e-08 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 60 2e-08 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 60 2e-08 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 60 2e-08 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 60 3e-08 UniRef50_C8W6G9 Putative two component transcriptional regulator... 59 3e-08 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 59 3e-08 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 59 3e-08 UniRef50_C7N0P4 Response regulator with CheY-like receiver domai... 59 3e-08 UniRef50_A5V0J0 Two component transcriptional regulator, winged ... 59 4e-08 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 59 4e-08 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 59 4e-08 UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus ... 59 5e-08 UniRef50_A9B3C3 Transcriptional regulator, winged helix family n... 59 5e-08 UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicu... 59 5e-08 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 59 6e-08 UniRef50_A6EAJ4 Response regulator (CheY-like receiver domain an... 59 6e-08 UniRef50_A3Q549 Two component transcriptional regulator, winged ... 59 6e-08 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 59 6e-08 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 59 6e-08 UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bac... 59 7e-08 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 59 7e-08 UniRef50_A9QSD4 Osmosensitive K+ channel response regulator n=22... 58 7e-08 UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicu... 58 7e-08 UniRef50_B0TWK4 Response regulator receiver protein n=9 Tax=Fran... 58 7e-08 UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostri... 58 8e-08 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 58 8e-08 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 58 8e-08 UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactoba... 58 8e-08 UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfi... 58 9e-08 UniRef50_A2CD17 Two-component response regulator n=58 Tax=Cyanob... 58 9e-08 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 58 1e-07 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 58 1e-07 UniRef50_C7M0J0 Two component transcriptional regulator, winged ... 58 1e-07 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 58 1e-07 UniRef50_Q0AKG2 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 57 1e-07 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_Q3A190 Two component signal transduction response regul... 57 1e-07 UniRef50_B8G223 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 57 1e-07 UniRef50_B8J1F3 Two component transcriptional regulator, winged ... 57 1e-07 UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synecho... 57 1e-07 UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinom... 57 1e-07 UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostri... 57 1e-07 UniRef50_B2XT10 Transcriptional regulatory protein 1 n=3 Tax=Het... 57 2e-07 UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Act... 57 2e-07 UniRef50_A3Z9V3 Two-component response regulator n=1 Tax=Synecho... 57 2e-07 UniRef50_C4L703 Two component transcriptional regulator, winged ... 57 2e-07 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 57 2e-07 UniRef50_B8I272 Two component transcriptional regulator, winged ... 57 2e-07 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 57 2e-07 UniRef50_Q01N64 Two component transcriptional regulator, winged ... 56 3e-07 UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6... 56 3e-07 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 56 3e-07 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 56 3e-07 UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clo... 56 3e-07 UniRef50_B6FPY5 Putative uncharacterized protein (Fragment) n=1 ... 56 3e-07 UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococ... 56 3e-07 UniRef50_Q0FDR7 Two-component transcriptional regulator, winged ... 56 3e-07 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 56 3e-07 UniRef50_A5FSG8 Two component transcriptional regulator, winged ... 56 4e-07 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 56 4e-07 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 56 4e-07 UniRef50_B9KYS7 KDP operon transcriptional regulatory protein kd... 56 4e-07 UniRef50_Q067N9 Two component transcriptional regulator, winged ... 56 4e-07 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 56 4e-07 UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=... 56 4e-07 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 56 5e-07 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 56 5e-07 UniRef50_C8WJL3 Two component transcriptional regulator, winged ... 56 5e-07 UniRef50_A4J267 Two component transcriptional regulator, winged ... 55 6e-07 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 55 6e-07 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 55 7e-07 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 55 7e-07 UniRef50_A5GA68 Two component transcriptional regulator, winged ... 55 8e-07 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 55 8e-07 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 55 8e-07 UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional r... 55 8e-07 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 55 8e-07 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 55 8e-07 UniRef50_B8FS97 Two component transcriptional regulator, winged ... 55 9e-07 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 55 9e-07 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 55 9e-07 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 54 1e-06 UniRef50_C7N3P4 Response regulator with CheY-like receiver domai... 54 1e-06 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 54 1e-06 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 54 1e-06 UniRef50_C7H2X2 KDP operon transcriptional regulatory protein Kd... 54 1e-06 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 54 1e-06 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 54 1e-06 UniRef50_C6XZP6 Response regulator receiver n=3 Tax=Sphingobacte... 54 1e-06 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 54 1e-06 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 54 1e-06 UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr... 54 2e-06 UniRef50_C7LNV6 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_B0T6F3 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_B0G7M7 Putative uncharacterized protein n=2 Tax=Clostri... 54 2e-06 UniRef50_D2QGK1 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 54 2e-06 UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridi... 54 2e-06 UniRef50_C0D2V9 Putative uncharacterized protein n=1 Tax=Clostri... 54 2e-06 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 54 2e-06 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 54 2e-06 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_B8I717 Two component transcriptional regulator, winged ... 54 2e-06 UniRef50_C3CKG2 Two-component response regulator n=11 Tax=Bacill... 54 2e-06 UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillu... 53 2e-06 UniRef50_C2V3X6 Two component transcriptional regulator, winged ... 53 2e-06 UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SM... 53 2e-06 UniRef50_C0ZDJ8 Two-component response regulator n=5 Tax=Firmicu... 53 2e-06 UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromon... 53 3e-06 UniRef50_Q893J9 Transcriptional regulatory protein n=1 Tax=Clost... 53 3e-06 UniRef50_C6NV64 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 53 3e-06 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 53 3e-06 UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slac... 53 3e-06 UniRef50_D0WIC7 Transcriptional regulatory protein YycF n=1 Tax=... 53 3e-06 UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostri... 53 3e-06 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_C9RQT3 Two component transcriptional regulator, winged ... 53 3e-06 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 53 3e-06 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 53 4e-06 UniRef50_C0WE14 Two-component system transcriptional regulator n... 52 4e-06 UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional r... 52 4e-06 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 52 4e-06 UniRef50_A4TWE5 Two component response regulator n=1 Tax=Magneto... 52 4e-06 UniRef50_D2BJC1 DNA-binding response regulator n=1 Tax=Dehalococ... 52 4e-06 UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostri... 52 4e-06 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 52 5e-06 UniRef50_C0BVZ7 Putative uncharacterized protein n=2 Tax=Clostri... 52 5e-06 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 52 5e-06 UniRef50_A9BR19 Two component transcriptional regulator, winged ... 52 5e-06 UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=... 52 6e-06 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 52 6e-06 UniRef50_A4IPQ9 DNA-binding response regulator n=16 Tax=Bacillal... 52 6e-06 UniRef50_P54443 Uncharacterized transcriptional regulatory prote... 52 7e-06 UniRef50_C8WHB5 Two component transcriptional regulator, winged ... 52 7e-06 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 52 7e-06 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 52 7e-06 UniRef50_C7NFF7 Response regulator with CheY-like receiver domai... 52 7e-06 UniRef50_A6LVN5 Two component transcriptional regulator, winged ... 52 8e-06 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 52 8e-06 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 52 8e-06 UniRef50_A9VUJ1 Two component transcriptional regulator, winged ... 52 8e-06 UniRef50_A5CZK5 Response regulator n=3 Tax=Clostridiales RepID=A... 52 8e-06 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 51 8e-06 UniRef50_D1CA41 Two component transcriptional regulator, winged ... 51 8e-06 UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicut... 51 8e-06 UniRef50_D1BX45 Two component transcriptional regulator, winged ... 51 9e-06 UniRef50_C9XRU4 Two-component system response regulator n=12 Tax... 51 9e-06 >UniRef50_P39901 Putative uncharacterized protein ybfI n=1 Tax=Escherichia coli K-12 RepID=YBFI_ECOLI Length = 65 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 MIALSVCWQIVRYLCRIRQM GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG Sbjct: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 Query: 61 YRFML 65 YRFML Sbjct: 61 YRFML 65 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ + G +E S+Y+R YMG+LR+K+E DPARP+H TE G+GYRF+ Sbjct: 174 VLTHRQLLKNVWGPGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 41/57 (71%), Positives = 48/57 (84%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + Q+ G NA+EHS+YLR YMGHLRQKLEQDPARPRHFITETGIGYRFML Sbjct: 169 KVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML 225 >UniRef50_B0SY74 Two component transcriptional regulator, winged helix family n=2 Tax=Caulobacter sp. K31 RepID=B0SY74_CAUSK Length = 235 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + + G + + YLR ++G LRQKLE DP+ PR +TE GIGYRF+ Sbjct: 178 KVLTHKDLLTAVWGPAHAQDTQYLRVFVGQLRQKLEADPSTPRMILTEPGIGYRFI 233 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/56 (48%), Positives = 39/56 (69%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + +R++ G + + S YLR YMGHLR KLE DPARP + +TE G+GYRF Sbjct: 175 KVMTHRELLREVWGPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEIGVGYRFA 230 >UniRef50_D0KIR4 Two component transcriptional regulator, winged helix family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIR4_PECWW Length = 204 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 44/56 (78%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + Q+ G NA+EHS+YLR YMGHLRQKLE DPARPRH +TET IGYRF+ Sbjct: 148 KVLTQRQLLTQVWGPNAVEHSHYLRIYMGHLRQKLESDPARPRHLLTETAIGYRFI 203 >UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Tax=Actinomycetales RepID=C1A1E5_RHOE4 Length = 226 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 38/57 (66%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++V +R++ G ++YLR Y+ LR+KLE DPA P+H ITE G+GYRF++ Sbjct: 170 KLVGQKELLREVWGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRFVV 226 >UniRef50_C6BG23 Two component transcriptional regulator, winged helix family n=69 Tax=Bacteria RepID=C6BG23_RALP1 Length = 234 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 39/54 (72%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + +R++ G + S+YLR YMGHLR KLE+DPARP H +TE G+GYRF Sbjct: 179 VMTHRELLREVWGPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGYRF 232 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ + G ++ + YLR Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 169 VLTHKHILKGVWGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRL 222 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++V + + G ++YLR YM LR+KLE DPA PR+ TE GIGYR ++ Sbjct: 168 RLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLVV 224 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 85.2 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + ++ + G + + YLR Y+G LR+KLE DP+ PRH +TE GIGYRF+ Sbjct: 175 KVLTHRMLLQHVWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 85.2 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 39/55 (70%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + +R++ G + ++YLR ++ LR+K+E DPARP++ +TE G+GYRF Sbjct: 178 KVLTHRFLLREVWGPQDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 38/56 (67%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + ++ + G E +Y+R +M +LR+K+E++ + PRH ITE GIGYRF+ Sbjct: 172 RVITHQQLLKAIWGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFV 227 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 84.4 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + ++ G E + YLR Y+G LR+KL+ P P+ +TE G+GYRF+ Sbjct: 173 KVMTHQMLLNRVWGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYRFV 228 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + + ++ G + S+YLR Y+ +LRQK+E+DP+ PR+ +TE G+GYRF+ Sbjct: 177 VLTHEMLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_B0T7K3 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B0T7K3_CAUSK Length = 393 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 36/56 (64%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + + + + G + + YLR ++G +RQKLE DP+RP+ +TE GIGYRFM Sbjct: 336 KAMTHKELLVSVWGPAHMHDTQYLRVFVGQVRQKLEADPSRPKIILTEAGIGYRFM 391 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + + G ++ + YLR Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 172 RVLTHRQILGAVWGPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRMA 227 >UniRef50_D1VGE4 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VGE4_9ACTO Length = 271 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 41/62 (66%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS ++V + ++ G N ++YLR Y+ LRQKLE+DPARPRH +T+ G+GY Sbjct: 208 VLLSHPGKLVTQRQLLTEVWGANYGSETHYLRTYLNRLRQKLEEDPARPRHLLTDPGMGY 267 Query: 62 RF 63 RF Sbjct: 268 RF 269 >UniRef50_Q39AE7 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. 383 RepID=Q39AE7_BURS3 Length = 232 Score = 82.1 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 39/56 (69%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + ++ G + ++YLR Y+GHLR+KLE+DP RP + +TETG+GYR Sbjct: 174 RLLTHDRLLSEVWGATHGKDAHYLRVYVGHLRRKLERDPRRPAYILTETGVGYRLA 229 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 82.1 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + ++ G ++YLR YM LR KLE+DPARP ITE G+GYR Sbjct: 177 KVLTHRQLLGEVWGPAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGYRL 231 >UniRef50_A9AWE4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWE4_HERA2 Length = 975 Score = 82.1 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + ++Q+ G + E YL Y+ LR KLE DP P+ +E+GIGYRFM Sbjct: 174 QVLTHRMLLQQVWGKSYSEDRAYLHAYIRRLRAKLEDDPTNPQLIHSESGIGYRFM 229 >UniRef50_D1CGU9 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGU9_THET1 Length = 233 Score = 81.4 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++V + +R++ G ++ LR + +R+KL DP PR+ +TE G+GYR M+ Sbjct: 175 KVVTHRMLLREVWGSEQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRLMV 231 >UniRef50_Q39SW2 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=Q39SW2_GEOMG Length = 233 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + +RQ+ G++ +E + LR + +LR+K+E DP+RPRH +TE G+GYR Sbjct: 174 KVLTHSQILRQIWGVSHLEQPHVLRVNISNLRRKIEMDPSRPRHILTEPGVGYRL 228 >UniRef50_Q2J7U7 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=Q2J7U7_FRASC Length = 272 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V + I Q+ G + S+ LR Y+ LR+KLE DP RPR+ TE G+GYR+ Sbjct: 216 KLVSHQQLISQVWGPGVADDSSSLRLYINKLRRKLEPDPTRPRYLTTEPGLGYRY 270 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + + + G + E S YLR ++G LR+K+E + + R+ +TE IGYRF+ Sbjct: 169 KVVPHRTLLSSVWGADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFI 224 >UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH domains) n=8 Tax=Bacteria RepID=B3E0R0_METI4 Length = 240 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 38/57 (66%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + ++++ G ++ +YLR YM LR+K+E++ +P+ +TE GIGYR M+ Sbjct: 175 KVLTHRQILQEVWGPRGVDQVHYLRVYMARLREKIEENSLQPKLLLTEPGIGYRLMI 231 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V +R++ G E ++YLR +G LRQKL D A P + +TE G+G RF+ Sbjct: 212 RVVTQPQLLREVWGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFI 267 >UniRef50_B5EL18 Two component transcriptional regulator, winged helix family n=3 Tax=Acidithiobacillus RepID=B5EL18_ACIF5 Length = 247 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 37/55 (67%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ Y + + G ++ + ++Y+R Y+ LR+K+E DP P++ +TE G+GYRF Sbjct: 186 RILSYRRILGAVWGEHSSDQAHYVRLYIKRLREKIEDDPGMPQYLVTEKGVGYRF 240 >UniRef50_C2BL33 Response regulator n=2 Tax=Corynebacterium RepID=C2BL33_9CORY Length = 237 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +VR + ++ G S+YLR Y LR+KLE DP+ P++ +TE G+GYRF+ Sbjct: 178 LVRKEDLLAEIWGPGFEGQSHYLRIYTSQLRRKLETDPSNPQYLLTEPGLGYRFI 232 >UniRef50_A4WZ32 Transposase and inactivated derivatives-like protein n=5 Tax=Alphaproteobacteria RepID=A4WZ32_RHOS5 Length = 229 Score = 79.8 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + +R++ G +H YLR + LR+KLE+DP+ PR E G+GYR Sbjct: 169 KVLTHTHLLREVWGPAHTDHVEYLRVTVRSLRKKLEEDPSAPRLIQNEPGVGYRL 223 >UniRef50_A8L9L0 Two component transcriptional regulator, winged helix family n=11 Tax=Actinomycetales RepID=A8L9L0_FRASN Length = 236 Score = 79.4 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V + Q+ G ++ LR Y+ LR+KLE DP RPRH TE G+GYR+ Sbjct: 180 KLVSSRALVSQVWGPAYAADTSSLRLYINRLRRKLEPDPTRPRHLTTEPGMGYRY 234 >UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MM81_BDEBA Length = 230 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + + ++ G N++EH++YLR Y+G LR+KL +TE G+GYR + Sbjct: 173 KVVTHRMLLNEVWGPNSVEHTHYLRVYVGGLRKKLHIREELAEIIVTEAGVGYRLL 228 >UniRef50_Q30T71 Two component transcriptional regulator, winged helix family n=2 Tax=Campylobacterales RepID=Q30T71_SULDN Length = 229 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + + ++++ G+ YLR Y+ LR+K+EQ+ RP + TE+GIGYRF Sbjct: 171 KTLTHKQILKEVWGVGYQSEMQYLRTYVNTLRKKIEQNSTRPTYIKTESGIGYRF 225 >UniRef50_C5SPS9 Two component transcriptional regulator, winged helix family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPS9_9CAUL Length = 235 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 35/55 (63%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + ++++ G ++ + YLR Y+G +R+KLE P + ++E+GIGYR Sbjct: 173 RMLTHKQILKEVWGPAHVDDTQYLRVYIGQVREKLETKPGLSKSIVSESGIGYRM 227 >UniRef50_D1B309 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B309_SULD5 Length = 233 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + ++++ G+ YLR Y+ LR+K+E RP + TE+ IGYRF Sbjct: 168 KVLPHQQILKEVWGVGYQNEMQYLRTYINSLRKKIEDSSTRPEYITTESSIGYRFA 223 >UniRef50_C1ABQ2 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABQ2_GEMAT Length = 233 Score = 77.1 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + + + G + + YLR Y+GHLR+KLE DP RP +TE G+GYRF Sbjct: 175 RTMTHKQLFDAVWGRHHGDAQQYLRVYIGHLRRKLEVDPLRPTLIVTEGGVGYRFA 230 >UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T9H2_RICCO Length = 104 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 I + + Q+ G + I+ ++YLR ++G LR KLE P+ P+ +TE GIGYR Sbjct: 50 IFTHSQLLAQVWGPDYIDDTHYLRIHIGRLRAKLEDQPSAPQILLTELGIGYRLA 104 >UniRef50_A9KJX4 Two component transcriptional regulator, winged helix family n=22 Tax=Bacteria RepID=A9KJX4_CLOPH Length = 245 Score = 76.0 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ Y I ++ G A ++ LR M ++R+K+E +PA P++ TE GIGYR + Sbjct: 175 RVMTYDSIITKIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMI 230 >UniRef50_B8IF93 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=B8IF93_METNO Length = 229 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + +R++ G A+ YLR Y+ LRQK+E DP RPR+ +TETG+GYR Sbjct: 173 KVLTHAFLLREIWG--AVADPQYLRVYVRQLRQKIEPDPERPRYILTETGVGYRL 225 >UniRef50_UPI00016A55B6 two component transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A55B6 Length = 197 Score = 75.6 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ G++ + ++Y+R YM +LRQKLE+ PA PR+ +TE GYR + Sbjct: 131 VIAARQLLAEVWGVHDADRAHYVRVYMTNLRQKLEETPATPRYLLTELQFGYRLV 185 >UniRef50_Q392X6 Two component transcriptional regulator, winged helix family n=29 Tax=Bacteria RepID=Q392X6_BURS3 Length = 250 Score = 74.8 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 36/55 (65%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ G++ + ++Y+R YM +LRQKLE PARPRH +TE GYR + Sbjct: 175 VIAARQLLAEVWGIHDADRAHYVRVYMTNLRQKLEPVPARPRHLLTELQFGYRLV 229 >UniRef50_C6NTZ4 DNA binding response regulator KdpE n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTZ4_9GAMM Length = 248 Score = 74.4 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I L C IV + + G EH++Y+R Y+ LR+K+E D + P+ +TE GIGY Sbjct: 172 ILLRNCGTIVPSKRILNAIWGHTHEEHTHYVRIYVQRLREKIESDASLPQFLLTELGIGY 231 Query: 62 RFML 65 R ++ Sbjct: 232 RLVV 235 >UniRef50_D1C556 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C556_SPHTD Length = 240 Score = 74.0 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +++ + + ++ G + YLR YM +LRQKLE++P RP H +TE G+GY Sbjct: 176 RVIPHDQLLTEVWGAEYRDEVEYLRTYMRYLRQKLERNPTRPTHLLTEPGVGY 228 >UniRef50_Q2GBD9 Two component transcriptional regulator, winged helix family n=2 Tax=Sphingomonadales RepID=Q2GBD9_NOVAD Length = 229 Score = 74.0 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 Q+V + + G N+ YLR YMG LRQKLE++P+ P +TE G+GYR ++ Sbjct: 170 QVVTHKRLLAAGWG-NSTADLQYLRVYMGLLRQKLEENPSEPELIVTEPGLGYRLIV 225 >UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9Y2I0_9FIRM Length = 239 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ I + G E + LR M LR+K+E++PA+PR+ +TE G+GYR + Sbjct: 175 KVLTTRYLISAIWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLV 230 >UniRef50_A9VZA6 Response regulator receiver n=30 Tax=Alphaproteobacteria RepID=A9VZA6_METEP Length = 248 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + ++ + YLR YM LRQKLE DP RPR +TETG+GYR Sbjct: 171 KVLTHAQLMNEV---SVSSDPQYLRVYMRQLRQKLEADPERPRILLTETGVGYRL 222 >UniRef50_B5EH76 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=B5EH76_GEOBB Length = 246 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + ++Q+ G+ +E N LR + +LRQK+E DP+RP + TE G+GYR Sbjct: 189 RVLTHSQILKQIWGVAYVEQQNVLRVNIRNLRQKIEPDPSRPFYITTEVGVGYRL 243 >UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogans RepID=Q72TM3_LEPIC Length = 227 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ IR + G A S LR ++ LR+K+E DP+ P +TE G+GYR + Sbjct: 169 KVLTQEQIIRHVWGPFAKNESGSLRVHVASLRKKIELDPSSPELLLTEPGVGYRLAI 225 >UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacteria RepID=C9XT65_CLODC Length = 232 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + I+++ G + LR +M LR+K+E+ PA PR+ ITE G+GYR Sbjct: 175 KVLTHNFIIKEIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRL 229 >UniRef50_D1CH01 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH01_THET1 Length = 238 Score = 72.5 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + + ++ G + L+ ++ LR KL DP +PR+ TE G+GYRF+ Sbjct: 172 QVLPHDLIMERVWGPTYVGDHQLLKVFIRRLRHKLGDDPEQPRYIQTEWGMGYRFV 227 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 71.7 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 35/55 (63%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +V + +R + G ++YL+ Y+ HLR+K+E DP +P+ +TE G+GYR + Sbjct: 172 VVTHEQLLRAVWGNEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRLL 226 >UniRef50_C1F4X4 KdpE n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4X4_ACIC5 Length = 238 Score = 71.7 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 35/56 (62%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + V + + + G + + +YLR ++ LR+K+E+DP+ P++ +T+ +GYRF Sbjct: 175 RAVTHGKLLTTVWGADYRQEIDYLRTFVRQLRKKIEEDPSNPKYLLTDAYVGYRFA 230 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 71.3 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + + ++ G +YLRNY+ LR+K+E DP P++ + + GIGY L Sbjct: 174 KVITHEDLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLAL 230 >UniRef50_A9WI76 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WI76_CHLAA Length = 225 Score = 69.8 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 33/54 (61%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +V ++++ G + ++Y++ + LR K+E DP+ PR+ ITE +GYRF Sbjct: 168 VVTARQIVQRVWGPQYTDSTDYVKGVIRRLRVKIEPDPSHPRYIITEPHVGYRF 221 >UniRef50_B4RHL6 Response regulator(With CheY-like receiver domain and winged-helix DNA-binding domain) n=4 Tax=cellular organisms RepID=B4RHL6_PHEZH Length = 237 Score = 69.4 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + V + I + G A + ++R + LRQKLE +P+ PR +TE G+GYR Sbjct: 171 RPVTHRQVIAAVWGAGAQVDAQFVRVLVAQLRQKLEAEPSAPRLLMTEPGLGYRLA 226 >UniRef50_B2UQC6 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiaceae RepID=B2UQC6_AKKM8 Length = 232 Score = 69.0 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + +R++ G E ++YLR ++ HLRQKL R E+G+GYR + Sbjct: 172 KVMTHRQLLREIWGPQHEEDTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGYRIV 227 >UniRef50_C1AAN0 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAN0_GEMAT Length = 238 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + + + + S +LR ++ HLR+K+E +PA PR +T+ G+GYRF Sbjct: 175 RTMTHRQLFLAVWNREYGDASLHLRVHLTHLRRKIEANPAEPRFIVTDPGVGYRF 229 >UniRef50_UPI000185BED4 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BED4 Length = 247 Score = 66.3 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++V L ++ + G + +NYLR Y+ LR K+E A ++ TE G+GYR +L Sbjct: 188 ELVTKLELLKAVWGDQYEKETNYLRVYISQLRHKIEPQQAHNKYLRTEVGVGYRMVL 244 >UniRef50_Q3ZWF6 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWF6_DEHSC Length = 233 Score = 65.6 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + ++ G I+ YL ++ HLR+K++Q A+ + +T GIGY Sbjct: 175 KVLDHRYLLSKVWGPEYIQDKAYLHVFISHLRKKIKQSNAKSEYILTIPGIGYML 229 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 65.6 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 33/55 (60%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ ++++ G + + S + ++ HLR KLE D + P+H +T+ G GYRF+ Sbjct: 184 VISREQLLQKIWGYDLLGSSRIVDIHISHLRDKLEDDSSHPQHILTKRGFGYRFI 238 >UniRef50_Q3ZVS3 DNA-binding response regulator n=4 Tax=Dehalococcoides RepID=Q3ZVS3_DEHSC Length = 230 Score = 64.8 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ Y + ++ G N L+ ++ +LR K+E +P P+ +TE G+GY + Sbjct: 172 QVLTYRMLLEKVWGTEYSGDLNLLKKHIHNLRAKIEVNPEYPKIIVTERGLGYSLI 227 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 64.8 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + + G + S + ++ LR+K+E DP+RP H ITE G+GYR + Sbjct: 180 VFTRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 64.4 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ R + N IE N + ++ LR+K+E DP+ P+ T GIGY+F+ Sbjct: 176 QVFTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFV 231 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 64.0 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + Q+ G + + S + ++ LR+K+E DP+ P++ +T G GYRF Sbjct: 201 RVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A5N881 KdpE n=41 Tax=Bacteria RepID=A5N881_CLOK5 Length = 238 Score = 64.0 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + ++ G N + LR +M LR+K+E++P++P++ T GIGYR + Sbjct: 175 KVLTHNFILHEIWG-NYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGYRML 229 >UniRef50_C2C899 DNA-binding response regulator KdpE n=9 Tax=Vibrionaceae RepID=C2C899_VIBCH Length = 255 Score = 64.0 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+V+ +R++ G + ++YLR + LR+KL TE+G+GYR + Sbjct: 193 QLVKQTDLLREVWGHSHTADTHYLRILVSQLRKKLNDSADEQHTIKTESGLGYRLV 248 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 64.0 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + G + + + ++ HLR+K+E DP +PR T G GY F+ Sbjct: 182 RVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 >UniRef50_D1CB22 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=D1CB22_THET1 Length = 238 Score = 63.6 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 34/55 (61%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ +R + G + + ++ ++ +LRQ++E+DPA P+H +T G+GY F Sbjct: 182 EVLPTEDLMRNVWGYSVAADDSLVKTHIYYLRQRIEEDPAHPKHILTVPGVGYLF 236 >UniRef50_A7K2K9 DNA-binding response regulator KdpE n=19 Tax=Gammaproteobacteria RepID=A7K2K9_VIBSE Length = 232 Score = 63.3 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + + G + +E ++YLR + LR+KL R TE G+GYR +L Sbjct: 170 KLIEQTHLLSVIWGKSHVEDTHYLRVLVSQLRKKLNDSADEQRLLKTEPGLGYRLVL 226 >UniRef50_C2JNW2 Response regulator n=9 Tax=Enterococcus RepID=C2JNW2_ENTFA Length = 234 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V Y + ++ G S LR M ++R+K+E + +P + ITE G+GYR Sbjct: 175 KVVAYQTLMTKVWGP-YSNDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRL 228 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ ++ G + +N + ++ LR+K+E+DP+ P + +T G+GYRF+ Sbjct: 175 VLSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFI 229 >UniRef50_C1ACD7 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACD7_GEMAT Length = 240 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + + + + ++R ++ HLR+K+E D + PR ITE G+GYRF Sbjct: 182 RPMSPRQLWDIVWDREFGDFATHVRVHITHLRRKIEPDASMPRLIITEPGVGYRF 236 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + ++ G +S+ + ++ LR K+E DP+ PR+ T G+GYRF Sbjct: 180 RAFSRDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFA 235 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ ++ + G + + + +M LR+K+E +P+ P++ T+ G+GY F + Sbjct: 182 KVYSRDNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_Q0RNB1 Putative response regulator (Response regulator protein) (Partial match) n=1 Tax=Frankia alni ACN14a RepID=Q0RNB1_FRAAA Length = 309 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + V + ++ G N + L ++ LR+K+E DP+ P H +T GIGYR Sbjct: 193 RAVTRKQLLERIWGYNYFGGARMLDVHVRRLRRKVEADPSAPTHILTVRGIGYR 246 >UniRef50_C7GCA3 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GCA3_9FIRM Length = 267 Score = 62.5 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +V Y + ++ G A ++S LR M ++R+K+E P P + T +GYR + Sbjct: 177 VVTYQMLLEKIWGPYAEQNSRILRVNMTNIRKKIESSPLEPEYITTIPRVGYRML 231 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 WQ+ + Q+ G + + ++ LR K+E+DP P +T G+GY+ Sbjct: 196 WQVFTRELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 61.7 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + + + G ++ + ++ LRQKLE DP P+HF+T G+GYRF+ Sbjct: 179 RPLTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRC9_9FIRM Length = 222 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ Q+ G ++ L ++ LRQK+E DP P+H T G+GY++ Sbjct: 165 RILTKEYLFNQIWGSDSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKY 219 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ R + + N + +M LR+K+E DP+ P++ T GIGY+ Sbjct: 169 KVFTKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + ++ G + + ++ HLR KLE DP P+ T G GY F+ Sbjct: 174 QVLSRDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ I ++ G + + + L ++ LR K+E DPA P H +T G+GY+ Sbjct: 171 RVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + + G N I N + ++ LR+K+E+DP+ P + T GIGY+ + Sbjct: 176 KVFTKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLV 231 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q++ ++ + G + + + LR+K+E DP+ P + +T G+GY Sbjct: 175 QVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y819_COPPD Length = 236 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I +S +++ + ++ G + L ++ LR K+E +P P++ +T G+GY Sbjct: 168 ILMSRAGEVLTREYLLNEIWGADYYGDKRTLDVHIKWLRDKIEPNPNEPKYILTVRGVGY 227 Query: 62 RF 63 +F Sbjct: 228 KF 229 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + G ++ + ++ +LR+K+EQDPARP + IT G+GY+F Sbjct: 177 RVFSAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ G + + + ++ LR K+E+DP+ P++ IT G GY+F Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 59.8 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ I ++ G + + + L ++ LR K+E+DPA P H +T G+GY+ Sbjct: 172 RVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 59.8 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ G + + + ++ LRQK+E DP+ PRH IT G GY+F Sbjct: 200 RVFSREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + Q+ G + + ++ LR K+E+DP +P +T G+GY+ Sbjct: 181 QVFTRELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C8W6G9 Putative two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6G9_DESAS Length = 277 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 QI + + ++ N + ++ LR+K+E +P +PR+ T G+GYRF Sbjct: 219 QIFTRNNLLTTIWEADSAGDDNTVTVHIRRLRKKIEVNPNKPRYIKTVWGVGYRF 273 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q++ ++ + G + S + + HLR+K+E DP RP++ T G GY F Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ ++ G+ + SN + ++ LR+K+E+DP+ P + +T G+GY+F+ Sbjct: 177 RVLSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFV 232 >UniRef50_C7N0P4 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0P4_SLAHD Length = 422 Score = 59.4 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V + G + E L Y+ +R+K+E +PA P+ +T G GY F Sbjct: 364 EVVTQRELVEAAWGEDYTEQMAGLAVYVRRIRKKIEDNPAEPQFLLTVWGEGYTF 418 >UniRef50_A5V0J0 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexaceae RepID=A5V0J0_ROSS1 Length = 229 Score = 59.4 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + ++ G + SN + Y+ LR K+E D PR+ IT +GY+F++ Sbjct: 170 RVLSASQILSKVWGYDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKFVV 226 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 59.0 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ ++ G + + + LR+KLE +P+ P++ T GIGYRF Sbjct: 189 KILTKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 59.0 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + + G + ++ S + ++ HLR KLE D P H +T G GY+F+ Sbjct: 181 QVLNRDQLVNGVWGYDILDTSRIVDIHISHLRDKLEDDSQHPTHLLTVRGFGYKFV 236 >UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692EE0 Length = 230 Score = 59.0 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + R ++ ++++ L ++ +LR+K+E +PA P++ IT G+GY+F Sbjct: 175 VFRIEELFEKVWSVDSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKF 228 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 59.0 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ +++ G + + ++G LR+K+E+DPA PR+ +T G+GYRF Sbjct: 173 QVFTREQLFQRLWGEF--GDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_A9B3C3 Transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3C3_HERA2 Length = 888 Score = 58.6 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 10 IVRYLCRIRQMXGLNAIEHSNY-LRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + ++ + G N S+Y L +G LR+KL P PR+ + E +GYRF L Sbjct: 56 VLSHRQLLQHVWGDNYERDSSYLLHVAIGRLREKLGDKP--PRYIVAEADLGYRFAL 110 >UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicutes RepID=D0AFB3_ENTFC Length = 103 Score = 58.6 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 33/55 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ + + G + I ++N + +++ LR+K+E +P P++ +T G+GY+F Sbjct: 44 QVFTKEQLYQNVWGDDDIPNANNMTSFIRKLRKKIEPNPDNPQYILTVWGVGYKF 98 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + G I N + ++ LR K+E+DPA P+ T G+GYR + Sbjct: 176 RVVTIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_A6EAJ4 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) n=1 Tax=Pedobacter sp. BAL39 RepID=A6EAJ4_9SPHI Length = 206 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + ++ G N+ ++ L ++ LR+K+E +P P+ T GIGYRF Sbjct: 149 KVINRDALMLEVWGYNSDVNTRTLDMHIVRLRKKIEANPDNPQLLQTVRGIGYRF 203 >UniRef50_A3Q549 Two component transcriptional regulator, winged helix family n=1 Tax=Mycobacterium sp. JLS RepID=A3Q549_MYCSJ Length = 246 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 + + + G + L ++G+LR+KL +PARP + GIGYR + Sbjct: 191 VTTLQQMLDAVWGPRWAGSTAKLHVHIGNLRRKLGDNPARPLLVLNVRGIGYRLAV 246 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS ++ I+ + G N + Y+ LR+K+E DP+ P++ IT +GY Sbjct: 162 LLLSSPGRVWTRDMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGY 221 Query: 62 RF 63 +F Sbjct: 222 KF 223 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 58.6 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 31/48 (64%) Query: 16 RIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G + + + + +++ LR K+E++PA+P++ +T G+GY+F Sbjct: 184 LLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bacteria RepID=MTRA_MYCBO Length = 225 Score = 58.6 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + Q+ G + + ++ LR K+E+DP P +T G+GY+ Sbjct: 168 QVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 58.6 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ +R + G +A + ++ HLR+KLE +P PRH +T G GYR Sbjct: 194 RLRNRQELLRAIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248 >UniRef50_A9QSD4 Osmosensitive K+ channel response regulator n=22 Tax=Bacteria RepID=A9QSD4_LACLK Length = 236 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ Y ++++ G E + LR + LR+K+E D P+ T G+GYR + Sbjct: 179 RVMTYNYLVKEIWGY-YEEDFSALRVFANTLRKKIELDSNYPKMIQTHIGVGYRMI 233 >UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B0MNE2_9FIRM Length = 232 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + ++ G++ + + L ++G LR+KL D T G+GYRF+ Sbjct: 175 RVVSREELLTKVWGIDFVGETRTLDMHIGTLRKKLSDDAENAHLIKTVRGVGYRFI 230 >UniRef50_B0TWK4 Response regulator receiver protein n=9 Tax=Francisella RepID=B0TWK4_FRAP2 Length = 228 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + ++ G + + YLR Y+G LR+KL +P +TE IGYRF+ Sbjct: 171 KLIMQNTLLHEVWGDCYGDGAQYLRVYIGQLRKKLSACKKQP-LIVTENAIGYRFI 225 >UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH75_EUBSP Length = 227 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + + ++ S + YM LR+KLE+D + P++ +T G+GYRF+ Sbjct: 172 RVFSKDALYEMVWDNDIVDDSTIV-VYMNRLRKKLEEDFSNPKYILTVRGLGYRFV 226 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + Y + ++ + + + +R ++ LR+K+E +P P++ + GIGYRF Sbjct: 173 VFSYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + G + ++ + ++ LR+K+E DP+ PR T GIGYRF Sbjct: 175 VLSKEQLVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRF 228 >UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EBW1_9LACO Length = 247 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 C Q++ ++ + G + + S + ++ HLR KLE DP P T G GY F Sbjct: 183 CGQVLSREQLLQGVWGYDILGTSRIVDIHISHLRDKLEADPNTPLWIKTNRGFGYSF 239 >UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24Q12_DESHY Length = 168 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ + G + S + ++ +R+K+E DP RP + +T G+GY+F Sbjct: 112 QVFTRQQLFDNLWGEKYLGDSGTITVFIRKVREKVELDPGRPEYILTVWGVGYKFA 167 >UniRef50_A2CD17 Two-component response regulator n=58 Tax=Cyanobacteria RepID=A2CD17_PROM3 Length = 268 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q V ++++ G + +R ++ HLR KLE DP +PR T G GY Sbjct: 177 QTVAPSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGY 229 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+ + + + + + N + ++ LRQKLE DP+ P++ +T G+GY+ Sbjct: 180 ILSKEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKL 233 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ + ++ L+A + ++ ++ HLR+K+E+ P RP + T G GYRF+ Sbjct: 170 QVWTHEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFV 225 >UniRef50_C7M0J0 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0J0_ACIFD Length = 230 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + +R + G + YLR Y+ LR KLE P +T+ GYR + Sbjct: 172 RLLSHAALLRAVWGRGYETETEYLRVYIRRLRAKLEA-PGDAPLILTQPRAGYRLV 226 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +R + + G + + L ++ LR+K+E +P+ PR+ T G GYR Sbjct: 174 KALRREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYR 227 >UniRef50_Q0AKG2 Two component transcriptional regulator, winged helix family n=98 Tax=Alphaproteobacteria RepID=Q0AKG2_MARMM Length = 256 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + V + ++ G N ++ L ++ LRQK+E DPA R +TE+G GYR Sbjct: 201 KPVPRDELLHEVWGYNPAVTTHTLETHIYRLRQKIEPDPAHARLLVTESG-GYRL 254 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ G++ + S + ++ LR+K+E +P+ P + +T G GYR Sbjct: 202 RVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 C + V + Q+ G +A + + ++ LRQKLE++P PR+ T G+GY+ Sbjct: 170 CGETVTREDLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + G++ + L ++ LR+K+E DPA P+ +T GIGYR++ Sbjct: 179 LPRNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYV 232 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ M + ++ + ++ LR+K+E+DPA+P++ T GIGY+F Sbjct: 178 QVFTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + ++ G + + ++ LR K+E+DPA PR +T G+GY+ Sbjct: 187 RVYSREQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYK 240 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 15 CRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+++ G + + + ++G LR+K+E DP+ P T G GY+F Sbjct: 182 QLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKF 230 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + I ++ G + + + + ++GHLR+KL+ D +R ++ T G+GYR Sbjct: 239 VFSRRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_B8J1F3 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1F3_DESDA Length = 247 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + ++ + G + ++ LR +M LR+KLE R + T G+GYR Sbjct: 185 KVLTHKTILQAVWGSSLPQNLPSLRVFMATLRKKLENAAPRCDYIHTHVGVGYRMA 240 >UniRef50_B1XLL2 Two-component response regulator n=3 Tax=Synechococcus RepID=B1XLL2_SYNP2 Length = 249 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q + ++++ G + + +R ++ HLR KLE +P RP++ T G GY Sbjct: 175 QTISPSEILKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGY 227 >UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinomycetales RepID=A9WLJ1_RENSM Length = 248 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ +R + G + S + + LR K E DP+ P+ +T G GYRF Sbjct: 190 QVRSREQLLRSVWGAEYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRF 244 >UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=C0D8Y6_9CLOT Length = 243 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + G + ++ + + Y+ HLR K+E +P PR+ T G+GY+F + Sbjct: 184 RVFTKEQLYELVWGNSIVDENAIM-VYISHLRNKIEDNPKSPRYIKTVWGLGYKFTV 239 >UniRef50_B2XT10 Transcriptional regulatory protein 1 n=3 Tax=Heterosigma akashiwo RepID=B2XT10_HETA2 Length = 231 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 9 QIVRYLCRIRQMXGLNAIE--HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ I+++ G N + Y+ LR K+E DP P+ T GIGY+F Sbjct: 172 KILTRKTIIKRVWGFNYSSHIDIRVVDVYISKLRVKIEDDPTNPQILKTIRGIGYKF 228 >UniRef50_D0WLW8 DNA-binding response regulator RegX3 n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLW8_9ACTO Length = 262 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++V + ++ G L ++ LR+++E DP P + T G GYRF Sbjct: 175 RVVEKRELLNKVWGGAVTGDGT-LAVHVRRLRRRIEPDPDNPVYICTVWGRGYRF 228 >UniRef50_A3Z9V3 Two-component response regulator n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z9V3_9SYNE Length = 120 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q V ++++ G + +R ++ HLR KLE DP +PR T G GY Sbjct: 33 QTVAPSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGY 85 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 57.1 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +I+ Q+ G + N + ++ LR+K+E +P+ P + T G+GYR + Sbjct: 173 RILSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G + + + N+M LR K E DP PRHF+T G+GYRF Sbjct: 176 RTFTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ + + G + + + +++ LR KLE D + P++ +T G+GY+F Sbjct: 176 QVFSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G++ I + + ++ +LR+K+E+DPA P+ +T GIGY+ Sbjct: 177 VFSLTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 56.7 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + G I N + Y+ LR+K+E +P +P + IT G+GYRF Sbjct: 183 RVFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_Q01N64 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01N64_SOLUE Length = 245 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + V + ++ GL+ + + N++ LR+ +E++P +PRH +T G+GYRF+ Sbjct: 183 KPVSRKAMLEEVWGLHEDTDTRAIDNFIVRLRRYVEEEPTKPRHLLTVRGVGYRFV 238 >UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6_BACP2 Length = 240 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 33/55 (60%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ ++ G+ + +N + ++ LR+K+E DP++P + +T G+GY+F+ Sbjct: 178 VLSKDQIYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKFI 232 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ ++ G + N++ LR KLE++ PRH +T G+GYRF+ Sbjct: 185 RVLSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 QI + G + + N + +M HLR+K+E +P++P + IT G+GY+ Sbjct: 179 QIFSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=D1PMF3_9FIRM Length = 239 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 I+ Y + G + + N L ++ HLR+KLE+ P +PR +T GIGY+ Sbjct: 180 IITYDALCEAVWGQDYYGYENSLNVHIRHLREKLEETPGKPRWLLTVRGIGYKLA 234 >UniRef50_B6FPY5 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPY5_9CLOT Length = 114 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ + + G + ++GH+R+K+E DP P T GIGY+F Sbjct: 56 QVFTHRQIYETVWGKEYFCDEGNVTAHIGHIRKKIELDPRNPVFIQTVRGIGYKFA 111 >UniRef50_Q3ZWG2 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWG2_DEHSC Length = 235 Score = 56.3 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +IV + G N + +N +R Y+ LR+KLE+D PR IT+ GIGY + Sbjct: 171 KIVTIPSLAEVLWGDNYLGAANAMRVYIRRLREKLEEDLKNPRFIITKPGIGYILI 226 >UniRef50_Q0FDR7 Two-component transcriptional regulator, winged helix family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FDR7_9RHOB Length = 226 Score = 55.9 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 IV + ++ G N+ ++ L ++ LRQK+E DPA ITETG GYR Sbjct: 172 IVSREILLHEVWGYNSKVTTHTLETHIYRLRQKIEIDPANACFLITETG-GYRL 224 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 55.9 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + Y + + + + + +R ++ LR+K+E DP +P+ + G+GYRF Sbjct: 174 VFTYDQLLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRF 225 >UniRef50_A5FSG8 Two component transcriptional regulator, winged helix family n=3 Tax=Dehalococcoides RepID=A5FSG8_DEHSB Length = 228 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + + G + + + +R Y+ +RQK+ D + P +T+ G+GY Sbjct: 170 VISHSTLSKMLWGEDYPDSIDAIRVYISRIRQKIHDDSSEPSIILTKPGLGYML 223 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ R++ G + +N + + LR+K+E+ P++PR +T G+GY+ Sbjct: 188 QVFDREVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLA 243 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + + G ++ HLRQK+E DP PR+ T G+GYRF Sbjct: 177 RVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_B9KYS7 KDP operon transcriptional regulatory protein kdpE n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYS7_THERP Length = 234 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++VR+ + + G I + YLR ++ LR KL D R T G+GYR Sbjct: 171 RVVRHSELLSHVWGPEFIRETYYLRTWVSRLRAKLRDDEEPHRIIQTRPGLGYRLA 226 >UniRef50_Q067N9 Two component transcriptional regulator, winged helix family protein n=1 Tax=Synechococcus sp. BL107 RepID=Q067N9_9SYNE Length = 234 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ I Q+ G++ I + ++ LR+K+E +P+ P T G GYRF Sbjct: 179 RVWSRDDLIDQIWGVDYIGDRKTVDVHIRWLREKIEANPSDPTKLSTVRGFGYRF 233 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 15 CRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+++ G + + + ++G LR+K+E D + P T G GY+F Sbjct: 203 QLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF 251 >UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=Clostridium difficile RepID=UPI00017F4CF5 Length = 124 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 QI+ ++ G + + N + ++ +R+KLE +P++P + +T G+GY+ + Sbjct: 65 QIISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKLAV 121 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 Q V +++ G + + + ++ LR KLE +P PR+ +T G GYRF++ Sbjct: 170 QTVDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 29/54 (53%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + Q+ G++ + ++ +LR+K+E++P++P+ T G GY+F Sbjct: 174 VFSAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_C8WJL3 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WJL3_EGGLE Length = 234 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + + + ++ ++R K+E DP P H +T G+GYRF Sbjct: 178 RVYTKAQLYELISASSHGGGEDSIMVHISNIRSKIEDDPNNPAHIVTVRGLGYRF 232 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 QI L + Q+ + + + ++ LR+K+E+D A+P T G+GY+F Sbjct: 173 QIFSRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKF 227 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ + + G + N + Y+ +R+K+E +P+ P + T G+GY+F Sbjct: 175 QVFSKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + + G + + ++ +R+KLE+DP+RPR+ T+ G+GY Sbjct: 172 VYTRQELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 Q+ L + ++ G + ++ +LR K+E DP P++ T G+GYRF L Sbjct: 169 QVFSRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFAL 225 >UniRef50_A5GA68 Two component transcriptional regulator, winged helix family n=8 Tax=Desulfuromonadales RepID=A5GA68_GEOUR Length = 243 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + + G ++ + L N++ LR+ E DPA+P +F T G+GYRF Sbjct: 178 IPRKTLLESVWGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + G + N + +M LR K+E DP P+ T GIGY+ Sbjct: 176 RVFTKVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + L + + G + + ++ +LR K+E DP PR+ T G+GYRF Sbjct: 171 VFSRLDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium tetani RepID=Q892Y1_CLOTE Length = 175 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + + G + + + + LR K+E +P+ P++ T G GYR Sbjct: 118 KAFSRDELLDLVWGYDFVGDPKIVDVNIRRLRAKIEDEPSNPKYIETVWGKGYR 171 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q + + ++ G N + + + +R K+E DP++P++ T G GY F Sbjct: 186 QSLSRDQILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 54.8 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ G + + ++ LR+KLE DP RP + +T G+GY+F Sbjct: 179 RVYSRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_B8FS97 Two component transcriptional regulator, winged helix family n=6 Tax=Firmicutes RepID=B8FS97_DESHD Length = 239 Score = 54.8 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 IV R + G + + N L ++ LR+K+E +P+ PR+ +T G+GY+ Sbjct: 180 IVTGDSLCRAVWGDDLYGYENTLMVHIRRLREKIEPEPSSPRYLLTVRGLGYKL 233 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 54.8 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + GL++I S + ++ +R+K+E +P++P++ T G+GYR + Sbjct: 175 RVFGKDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 54.8 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ + N + ++ LR+K+E DP+ P + T G+GY+F Sbjct: 171 RVFTKAHLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + Q+ + + + ++ LR+K+E +P+ P T GIGY+ Sbjct: 185 KVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + + + +G LR+K+E DP PRH IT GIGY F Sbjct: 175 RVMTRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +I Q+ GL +I + ++ LR+K+E++P P + + GIGY+F+ Sbjct: 189 RIFTAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFI 244 >UniRef50_C7N3P4 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Bacteria RepID=C7N3P4_SLAHD Length = 235 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 IV + + G + ++N L ++ LR+K+E DP+ P+ +T G+GYR Sbjct: 177 IVTSDDLAQAVWGTSFG-YANALMVHVRRLREKIEDDPSDPQWILTVRGLGYRLA 230 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + ++ G + + + + ++G LR+K+E +P P++ T G GY+F Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + ++ G A+ S + ++ +R+K+E+DPA PR+ T G GYRF Sbjct: 174 VFSREALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_C7H2X2 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2X2_9FIRM Length = 243 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ Y +R + G + L+ M ++R+KL P R + + E G+GYR + Sbjct: 178 RVMTYAAIVRAIWGDTDCGSTKKLQVNMANIRKKLGSVPGRNTYILNELGVGYRMI 233 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ G + SN + ++ LR+KL + +RP + T G+GYR Sbjct: 210 VLSREELLSEVWGTTFLGGSNVVDVHIKSLRKKLGDNASRPTYITTVRGVGYRLA 264 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +++ + + G + N + ++ LR+K+E P++P +T G+GY+F++ Sbjct: 208 RVISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_C6XZP6 Response regulator receiver n=3 Tax=Sphingobacteriaceae RepID=C6XZP6_PEDHD Length = 233 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + G N+ ++ L ++ LR+K+E +P P+ T G+GYRF Sbjct: 176 KVINRDELMLVVWGYNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVGYRF 230 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 54.4 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 16 RIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G + + + ++ LR+K+E DP PR +T G+GYR+ Sbjct: 232 LLEHVWGWSYG-DPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 54.0 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + G+N + + LRQK+E DP+ P + T G GY+ Sbjct: 172 VLSRDALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYK 224 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 54.0 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ +RQ+ G + + Y+ LR KL DP+ P+ T G GYR + Sbjct: 170 RVFPRGTLLRQVWGEDEYIDERTVNVYVQRLRNKLGDDPSDPKLIETVRGFGYRLV 225 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 54.0 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + + + Y+ +R+K+E++P PR+ T G GYRF + Sbjct: 172 RVFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 54.0 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ I ++ G + + ++ LR+K+E DP+ P T G+GYRF Sbjct: 205 RVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPDPSAPTFVKTVVGVGYRF 259 >UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales RepID=C9XSJ2_CLODC Length = 228 Score = 54.0 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 32 LRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 L Y+ LR+K+E DP+ P+ +T G GYR Sbjct: 190 LTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221 >UniRef50_C7LNV6 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LNV6_DESBD Length = 229 Score = 54.0 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 24/37 (64%) Query: 27 EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 HS + ++ LR+K+E++P PR +T G+GYRF Sbjct: 189 SHSRAVDVHVQRLRKKIEENPQAPRIILTVAGVGYRF 225 >UniRef50_B0T6F3 Two component transcriptional regulator, winged helix family n=77 Tax=Alphaproteobacteria RepID=B0T6F3_CAUSK Length = 232 Score = 54.0 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + V + ++ G NA ++ L ++ LRQK+E DPA R ITE G GYR Sbjct: 177 KPVSREELLTEVWGYNAGVTTHTLETHVYRLRQKIEPDPAVARILITEMG-GYRL 230 >UniRef50_B0G7M7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G7M7_9FIRM Length = 231 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 I ++ + + S L Y+ LR KLE DP+ P H T G GY+F + Sbjct: 177 IFSKQELFSKVWRSDNCDDSTIL-VYIKKLRDKLEDDPSHPTHICTVWGKGYKFCI 231 >UniRef50_D2QGK1 Two component transcriptional regulator, winged helix family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGK1_9SPHI Length = 244 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + + G + + + + ++ LR K+E D RP + +T GIGYRF Sbjct: 176 KSFSRQKILSLVWGYHHDGYEHTVTAHINRLRIKIEPDFTRPIYILTTWGIGYRFA 231 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + G + Y+ +R+K+E DP PR T G GYRF Sbjct: 172 RVFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX3_CLOBU Length = 234 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + G + + ++ +LR+K+E+DP P++ T GIGY+ + Sbjct: 176 RVYSKAQLYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIEV 232 >UniRef50_C0D2V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2V9_9CLOT Length = 229 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 N + + +LRQK+E DP P++ +T GIGY+F++ Sbjct: 190 DDNTVMVTIRNLRQKIEDDPKSPKYLLTVYGIGYKFVI 227 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 QI+ + + G S + ++ LR+KLE+DP+RPR T G GY F Sbjct: 177 QILSKHQIYKDVWGEFYGGDSTVM-VHVRRLREKLEEDPSRPRWIKTVRGQGYIF 230 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + G + + + + HLR+K+E +P P + T G GY+ Sbjct: 175 KVQSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 QI+ + + + L ++ LRQ++E D P++ +T G+GY+F+ Sbjct: 169 QILSREQLLEAVFAGDYAGFDRSLDAHIARLRQRIEHDRTNPQYIVTVYGLGYKFV 224 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ + + I+ + + Y+ LR+KLE + P+H +T GIGY+F+ Sbjct: 176 QVFTKEQLYENIWNNSIIDDNAIM-VYIHQLRKKLEDNVKSPKHIVTVWGIGYKFI 230 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + ++ G + + + + ++ LR+KLE DPA P T GIGY F Sbjct: 173 LSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_B8I717 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=B8I717_CLOCE Length = 228 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 9 QIVRYLCRIRQMXGLNAI-EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q++ ++++ G + N + M LRQK+E DP P++ T GIGY Sbjct: 167 QVLTRDIILQRLWGTDEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220 >UniRef50_C3CKG2 Two-component response regulator n=11 Tax=Bacillus cereus group RepID=C3CKG2_BACTU Length = 245 Score = 53.6 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMX-GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ ++Q+ G N N L Y+ LR K+E +P +P+ +TE G GYR Sbjct: 184 KALKRDELLQQITEGENVFFDENTLSVYIKRLRAKVEDNPQKPQFIVTERGYGYR 238 >UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillus thuringiensis RepID=C3IWQ5_BACTU Length = 214 Score = 53.2 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +I + N + ++ LR+KLE P P + T G+GYRF Sbjct: 151 RIFTKKQIFESVWSDYYCADDNTIMVHISRLREKLEDSPKNPVYIKTIRGLGYRFA 206 >UniRef50_C2V3X6 Two component transcriptional regulator, winged helix n=4 Tax=Bacillus cereus RepID=C2V3X6_BACCE Length = 233 Score = 53.2 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 16 RIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ G+N + ++ + + LRQK+E P+ P +T G GYR Sbjct: 179 LLNKIWGINCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYR 225 >UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SMC3_THET8 Length = 223 Score = 53.2 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + ++ G + Y+ LR+KL DP PR T G+GYRF+ Sbjct: 166 RVFTRGELLERVWGPEFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGYRFL 221 >UniRef50_C0ZDJ8 Two-component response regulator n=5 Tax=Firmicutes RepID=C0ZDJ8_BREBN Length = 235 Score = 53.2 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 12 RYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 R ++ G +A N L Y+ LR K+E DP P +T+ G+GYR Sbjct: 177 RDDLLMKVSEGEDAFFDENTLSVYIKRLRAKVEDDPKNPEFIVTQRGLGYR 227 >UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q488W3_COLP3 Length = 260 Score = 53.2 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ + + G + + + + +++ LR KLE+D P+ T G+GY+ Sbjct: 193 QVFSRAQLLDGVWGYHHNGYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGYKL 247 >UniRef50_Q893J9 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893J9_CLOTE Length = 159 Score = 53.2 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 1 MIALSVCWQIVRYLCRIRQ-MXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGI 59 +I ++ +++ + + + G + +N L Y+ +R K+E+D + P + T+ GI Sbjct: 89 LIFMTNAKKVMSREEILNKLIEGEGSYFDTNTLSVYIKRIRDKIEEDSSNPEYIKTKRGI 148 Query: 60 GY 61 GY Sbjct: 149 GY 150 >UniRef50_C6NV64 Two component transcriptional regulator, winged helix family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NV64_9GAMM Length = 247 Score = 53.2 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + + ++ + G + + + LR+ +E++P +PR TE G+GYRF+ Sbjct: 169 RALSRDHLLQALGGDDDGRFDRSIDVRVTRLRKLIEENPRQPRFLRTERGVGYRFV 224 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q++ + + G N + + LRQK+E++PA P+ T G GY+ Sbjct: 172 QVMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 16 RIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + + G N + + + +++ LR K+E D P + +T GIGYRF Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + + + + + ++ HLR K+EQ+ P + +T +GY+ Sbjct: 173 KVLSRQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ I ++ G + + ++ LR+K+E DPA P T G+GY+F Sbjct: 187 RVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD8_9ACTN Length = 242 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 21/42 (50%) Query: 22 GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 G + + + +M LR K+E DP PR T G+GYR Sbjct: 191 GKEFVGETTTITVFMKKLRSKVEDDPTDPRIIETVWGVGYRL 232 >UniRef50_D0WIC7 Transcriptional regulatory protein YycF n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIC7_9ACTN Length = 286 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 IV R + G +N L + LR+K+E DP+ PR +T G+GYR M Sbjct: 219 IVTSDELARSVYGDEFGN-ANALAILVRRLREKIEHDPSDPRWIVTVRGLGYRLM 272 >UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SR47_9FIRM Length = 239 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +++ + + GL + + + ++ LR+KLE DP+ P+ T G GY Sbjct: 181 RVLTKEQIMSAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGY 233 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ I G + + + N++ +LR+K+ DPA PR+ G+GYRF Sbjct: 169 RVLSRDQLIAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >UniRef50_C9RQT3 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQT3_FIBSS Length = 242 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 16 RIRQMXGLNAIE--HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +R++ G E + + ++ LR+K+E DPA P+ +T G GY+ Sbjct: 183 LLRKVWGYENAESVDTRTVDIHITKLRKKIEDDPAHPKLLVTFRGEGYQM 232 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + ++ G + + S + ++ +R+K+E D P+ T G GYRF Sbjct: 181 VFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRF 234 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 52.9 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + G + + ++ LR+KL +DP PR T +GY F Sbjct: 185 RVLSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 12 RYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 R + M G + ++ +LR+KLE DP++P + +T G+GY+F Sbjct: 176 RMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional regulatory proteinphoP n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3D0_SALRD Length = 253 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 + V +R + G++ + + ++ LR+K+E P P + T GIGY+F+ Sbjct: 183 RTVSREQLLRDVWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKFV 238 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 29 SNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 S + ++ HLRQK+E+ P++P H +T G GYRFM Sbjct: 262 SRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297 >UniRef50_A4TWE5 Two component response regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWE5_9PROT Length = 191 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +V + ++ G ++ L ++ LRQK+E DP++ +TE G GYR Sbjct: 135 VVGRDELLARVWGYGNDISTHTLETHIYRLRQKIEADPSQASLLLTEAG-GYRL 187 >UniRef50_D2BJC1 DNA-binding response regulator n=1 Tax=Dehalococcoides sp. VS RepID=D2BJC1_DEHSV Length = 226 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 25/53 (47%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +IV I + G + LR + LR K+E DP P+ T+TG GY Sbjct: 169 KIVTNTTLINALWGYDYPGSLESLRVCIYRLRNKIEADPKNPKIIKTQTGHGY 221 >UniRef50_B0N9X7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0N9X7_EUBSP Length = 152 Score = 52.5 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+ + + + + +++ LR+K+E DP+RP + T G+GYR Sbjct: 93 ILSKEQIYNFVWNGEYLWDDSNITSHIRRLRKKIEDDPSRPEYIQTVRGVGYRM 146 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 52.5 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 16 RIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 +R++ G + S + +M LR+KLE DP+ PR +T GYR + Sbjct: 195 LLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRMAM 244 >UniRef50_C0BVZ7 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0BVZ7_9CLOT Length = 225 Score = 52.5 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + +R + G ++ S L ++ LR K+E++P P+ +T G+GYR+ Sbjct: 168 KTLRKEYIFGNVWGTDSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGYRY 222 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 52.5 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 15 CRIRQMXGLNAIE--HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++++ G + + ++ LR KLE DP+ P +T G GY F Sbjct: 184 SILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_A9BR19 Two component transcriptional regulator, winged helix family n=30 Tax=cellular organisms RepID=A9BR19_DELAS Length = 252 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + G + +MG +R +E DP P+ +T G+GY F Sbjct: 193 RVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVFA 248 >UniRef50_Q2NW72 KDP operon transcriptional regulatory protein n=4 Tax=Proteobacteria RepID=Q2NW72_SODGM Length = 241 Score = 52.1 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPA 48 +++ ++Q+ G ++S YLR YMGHLR KLE DPA Sbjct: 168 KVLTQAHILKQVWGPT-ADNSQYLRIYMGHLRHKLESDPA 206 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 52.1 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 16 RIRQMXGLNAIE--HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++++ G + + ++ LR KLE DP+ P +T G GY F Sbjct: 194 ILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 51.7 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ +RQ+ ++ + N++ LR KLE DP PR FIT G GYRF Sbjct: 171 RVFSREELLRQVWKQSSGT-LRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >UniRef50_A4IPQ9 DNA-binding response regulator n=16 Tax=Bacillales RepID=A4IPQ9_GEOTN Length = 222 Score = 51.7 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 27/54 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 QI+ + G IE L ++ +LR+KLE+DP P T GIGYR Sbjct: 166 QILTKEQLYEGVWGEPYIEGDKTLMVHIRYLREKLEKDPKNPEIIETIRGIGYR 219 >UniRef50_P54443 Uncharacterized transcriptional regulatory protein yrkP n=4 Tax=Bacillus RepID=YRKP_BACSU Length = 231 Score = 51.7 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 9 QIVRYLCRIRQMXG-LNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I + G +N + ++ LR K+E DPARP + TE G GYRF Sbjct: 173 KIFSAQNIYESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >UniRef50_C8WHB5 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=C8WHB5_EGGLE Length = 223 Score = 51.7 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 32 LRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L Y+ LR K+E DPA PR +T G+GYR Sbjct: 190 LSVYVKRLRDKVEDDPAEPRLILTVRGLGYR 220 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 51.7 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ + + + G + + + ++ LR K+E DPA P +T G GY+ Sbjct: 177 KVFSRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLA 232 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 51.7 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + I G + + + ++ ++RQK+E +P P++ IT G GYRF Sbjct: 175 KTFTREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_C7NFF7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=11 Tax=Actinomycetales RepID=C7NFF7_KYTSD Length = 244 Score = 51.7 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V +R+ + + + L ++ LR+KL D + PR T G+G+R + Sbjct: 186 RVVSREQLMREAWQTDWVGSTKTLDMHVSGLRKKLGDDHSDPRFIATVRGVGFRLV 241 >UniRef50_A6LVN5 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=A6LVN5_CLOB8 Length = 228 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ G E N + ++ +R+K+E++P PR+ T G+GYR Sbjct: 175 VFSIEKIYEKIWGDVFFESDNTVMVHIRKIREKIEEEPENPRYIRTVWGVGYR 227 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + G N + + + LR KLE DP+ P++ T G GY Sbjct: 176 LSRDKLLDLAWGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGY 226 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ ++ SN + ++ H+R+K+E DP P + T GIGY+ Sbjct: 169 KVFTKKQIYEEVWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYK 222 >UniRef50_A9VUJ1 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VUJ1_BACWK Length = 225 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + ++ G+N + + + + LRQK+E +P+ P+ T G GY Sbjct: 170 KPISRDELLNEIWGVNYVVKTKVIGVNIRRLRQKIEPNPSGPQFLRTVWGKGY 222 >UniRef50_A5CZK5 Response regulator n=3 Tax=Clostridiales RepID=A5CZK5_PELTS Length = 240 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 22/36 (61%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 L ++ LR+K+E+DPA P+ I+ G GY+F Sbjct: 196 DHRSLMVHISKLRKKIEEDPANPKFIISVRGFGYKF 231 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 51.3 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 14 LCRIRQMXG-LNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 RI +M G ++ + +G LR+K+E+DPARP +TE G GY+F+ Sbjct: 178 RARIAEMIGRPAGRGNNRMIDVVVGRLRKKVEKDPARPEWILTEHGKGYQFV 229 >UniRef50_D1CA41 Two component transcriptional regulator, winged helix family n=3 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CA41_SPHTD Length = 310 Score = 51.3 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 11 VRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 V I + G++ + SN + Y+ LR+K+E +P+ P + T G+GY F Sbjct: 175 VSRKRLIERTWGVDFLHESNRVDVYIRRLREKIEPEPSSPIYVRTVRGVGYVF 227 >UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicutes RepID=B1KWY3_CLOBM Length = 237 Score = 51.3 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 28 HSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 N L Y+ LR+K+E+DP +P + T GIGYR Sbjct: 200 DGNTLNVYIKRLREKIEKDPKKPEYIETVRGIGYR 234 >UniRef50_D1BX45 Two component transcriptional regulator, winged helix family n=26 Tax=Actinomycetales RepID=D1BX45_XYLCX Length = 227 Score = 51.3 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +V +R + G + + + L ++ LR+KL D PR+ T G+G+RF Sbjct: 169 VVVRDTLMRDVWGSDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGFRF 222 >UniRef50_C9XRU4 Two-component system response regulator n=12 Tax=Clostridium RepID=C9XRU4_CLODC Length = 278 Score = 51.3 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +I+ Q+ G+ + N + ++ H+R+K+E +P+ P+ IT G+GY+ + Sbjct: 219 KIIGKERLYEQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 274 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 105 4e-22 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 104 8e-22 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 102 3e-21 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 102 5e-21 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 101 8e-21 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 101 1e-20 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 100 1e-20 UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Copr... 100 1e-20 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 100 1e-20 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 100 2e-20 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 99 2e-20 UniRef50_B8I014 Two component transcriptional regulator, winged ... 99 2e-20 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 100 3e-20 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 99 4e-20 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 99 4e-20 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 98 6e-20 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 98 7e-20 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 98 7e-20 UniRef50_C4L703 Two component transcriptional regulator, winged ... 98 8e-20 UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostri... 98 8e-20 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 98 8e-20 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 98 9e-20 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 98 9e-20 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 98 9e-20 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 98 1e-19 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 98 1e-19 UniRef50_Q0RNB1 Putative response regulator (Response regulator ... 97 1e-19 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 97 1e-19 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 97 2e-19 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 97 2e-19 UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminoc... 97 2e-19 UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional r... 96 3e-19 UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillu... 96 3e-19 UniRef50_C8W6G9 Putative two component transcriptional regulator... 96 3e-19 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 96 3e-19 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 96 4e-19 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 96 4e-19 UniRef50_D1CH01 Two component transcriptional regulator, winged ... 96 4e-19 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 96 4e-19 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 96 5e-19 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 95 6e-19 UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridi... 95 6e-19 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 95 7e-19 UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicu... 95 1e-18 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 95 1e-18 UniRef50_A6EAJ4 Response regulator (CheY-like receiver domain an... 94 1e-18 UniRef50_Q067N9 Two component transcriptional regulator, winged ... 94 1e-18 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 94 1e-18 UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfi... 94 1e-18 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 94 2e-18 UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromon... 93 2e-18 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 93 2e-18 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 93 2e-18 UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostr... 93 2e-18 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 93 2e-18 UniRef50_A4J267 Two component transcriptional regulator, winged ... 93 2e-18 UniRef50_D1C683 Two component transcriptional regulator, winged ... 93 2e-18 UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6... 93 2e-18 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 93 2e-18 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 93 3e-18 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 93 3e-18 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 93 3e-18 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 93 3e-18 UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactoba... 93 3e-18 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 93 3e-18 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 93 4e-18 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 92 4e-18 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 92 4e-18 UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinom... 92 4e-18 UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Ta... 92 4e-18 UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus Re... 92 5e-18 UniRef50_C6XZP6 Response regulator receiver n=3 Tax=Sphingobacte... 92 5e-18 UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacte... 92 5e-18 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 92 5e-18 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 92 5e-18 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 92 5e-18 UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=... 92 5e-18 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 92 6e-18 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 92 6e-18 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 92 6e-18 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 92 6e-18 UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus... 92 6e-18 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 92 6e-18 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 92 7e-18 UniRef50_C8WJL3 Two component transcriptional regulator, winged ... 91 7e-18 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 91 7e-18 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 91 7e-18 UniRef50_A5V0J0 Two component transcriptional regulator, winged ... 91 7e-18 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 91 8e-18 UniRef50_B6FPY5 Putative uncharacterized protein (Fragment) n=1 ... 91 8e-18 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 91 9e-18 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 91 1e-17 UniRef50_B8G223 Two component transcriptional regulator, winged ... 91 1e-17 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 91 1e-17 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 91 1e-17 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 91 1e-17 UniRef50_B1HYB3 DNA-binding response regulator n=2 Tax=Bacillace... 91 1e-17 UniRef50_C7G9Y4 DNA-binding response regulator n=6 Tax=Bacteria ... 91 1e-17 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 91 2e-17 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 90 2e-17 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 90 2e-17 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 90 2e-17 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 90 2e-17 UniRef50_C0WE14 Two-component system transcriptional regulator n... 90 2e-17 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 90 2e-17 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 90 2e-17 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 90 2e-17 UniRef50_C4W819 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus ... 90 2e-17 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 90 2e-17 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_D1VGE4 Two component transcriptional regulator, winged ... 90 2e-17 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 90 3e-17 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 90 3e-17 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 90 3e-17 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 90 3e-17 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 90 3e-17 UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicu... 90 3e-17 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 89 4e-17 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 89 4e-17 UniRef50_A9AWE4 Two component transcriptional regulator, winged ... 89 4e-17 UniRef50_A4AL32 Putative two-component system response regulator... 89 4e-17 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 89 4e-17 UniRef50_A9BR19 Two component transcriptional regulator, winged ... 89 4e-17 UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactob... 89 4e-17 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 89 4e-17 UniRef50_C6D5Y8 Putative two component transcriptional regulator... 89 5e-17 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 89 5e-17 UniRef50_Q39SW2 Two component transcriptional regulator, winged ... 89 5e-17 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 89 5e-17 UniRef50_B0SY74 Two component transcriptional regulator, winged ... 89 5e-17 UniRef50_B8I272 Two component transcriptional regulator, winged ... 89 6e-17 UniRef50_D2QGK1 Two component transcriptional regulator, winged ... 88 6e-17 UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria ... 88 6e-17 UniRef50_A8MLN3 Two component transcriptional regulator, winged ... 88 6e-17 UniRef50_C1XV31 Response regulator with CheY-like receiver domai... 88 7e-17 UniRef50_D0KIR4 Two component transcriptional regulator, winged ... 88 8e-17 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 88 8e-17 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 88 8e-17 UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SM... 88 8e-17 UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepI... 88 8e-17 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 88 8e-17 UniRef50_A4IPQ9 DNA-binding response regulator n=16 Tax=Bacillal... 88 9e-17 UniRef50_A6NWH9 Putative uncharacterized protein n=2 Tax=Bactero... 88 9e-17 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 88 1e-16 UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Ta... 88 1e-16 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 88 1e-16 UniRef50_C1ABQ2 OmpR family two-component response regulator n=1... 88 1e-16 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 88 1e-16 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 88 1e-16 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 88 1e-16 UniRef50_B5EH76 Two component transcriptional regulator, winged ... 87 1e-16 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 87 1e-16 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 87 1e-16 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 87 1e-16 UniRef50_UPI00017890B9 putative two component transcriptional re... 87 2e-16 UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1... 87 2e-16 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 87 2e-16 UniRef50_D1YA87 Transcriptional regulatory protein, C-terminal d... 87 2e-16 UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slac... 87 2e-16 UniRef50_UPI0001C31E43 two component transcriptional regulator, ... 87 2e-16 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 87 2e-16 UniRef50_B8FQL7 Two component transcriptional regulator, winged ... 87 2e-16 UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostri... 86 2e-16 UniRef50_D2R313 Two component transcriptional regulator, winged ... 86 2e-16 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 86 3e-16 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 86 3e-16 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 86 3e-16 UniRef50_A4WZ32 Transposase and inactivated derivatives-like pro... 86 3e-16 UniRef50_A6LVN5 Two component transcriptional regulator, winged ... 86 3e-16 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 86 3e-16 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 86 3e-16 UniRef50_A9F790 Two component system transcriptional regulatory ... 86 3e-16 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 86 3e-16 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 86 3e-16 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 86 3e-16 UniRef50_C2H8S4 Response regulator n=8 Tax=Enterococcus RepID=C2... 86 3e-16 UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia... 86 4e-16 UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clo... 86 4e-16 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 86 4e-16 UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmic... 86 4e-16 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 86 4e-16 UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional r... 86 4e-16 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 86 4e-16 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 86 4e-16 UniRef50_C0D2V9 Putative uncharacterized protein n=1 Tax=Clostri... 85 5e-16 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 85 5e-16 UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5... 85 5e-16 UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogan... 85 6e-16 UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostri... 85 6e-16 UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniib... 85 6e-16 UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional r... 85 6e-16 UniRef50_Q39AE7 Two component transcriptional regulator, winged ... 85 6e-16 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 85 6e-16 UniRef50_D1CG76 Two component transcriptional regulator, winged ... 85 7e-16 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 85 7e-16 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 85 7e-16 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 85 8e-16 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 85 8e-16 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 85 8e-16 UniRef50_B5EL18 Two component transcriptional regulator, winged ... 85 8e-16 UniRef50_A1SYE4 Two component transcriptional regulator, winged ... 84 9e-16 UniRef50_C0D765 Putative uncharacterized protein n=1 Tax=Clostri... 84 9e-16 UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH do... 84 9e-16 UniRef50_C0X3L2 Response regulator n=22 Tax=Enterococcus faecali... 84 9e-16 UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bac... 84 9e-16 UniRef50_C7NFF7 Response regulator with CheY-like receiver domai... 84 1e-15 UniRef50_B8GBC5 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_Q2W608 Response regulator consisting of a CheY-like rec... 84 1e-15 UniRef50_B2V706 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 84 1e-15 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 84 1e-15 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 84 1e-15 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 84 1e-15 UniRef50_Q2J7U7 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_B1JFX2 Two component transcriptional regulator, winged ... 84 1e-15 UniRef50_Q893J9 Transcriptional regulatory protein n=1 Tax=Clost... 84 1e-15 UniRef50_UPI00016988BE Two component Transcriptional regulator, ... 84 1e-15 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 84 1e-15 UniRef50_C6NV64 Two component transcriptional regulator, winged ... 84 2e-15 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 84 2e-15 UniRef50_A5ZNL8 Putative uncharacterized protein n=3 Tax=Ruminoc... 84 2e-15 UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostri... 84 2e-15 UniRef50_C7QI13 Two component transcriptional regulator, winged ... 83 2e-15 UniRef50_Q3ZVS3 DNA-binding response regulator n=4 Tax=Dehalococ... 83 2e-15 Sequences not found previously or not previously below threshold: UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 91 8e-18 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 91 1e-17 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 88 7e-17 UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifi... 88 1e-16 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 88 1e-16 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 86 3e-16 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 86 4e-16 UniRef50_C6LD48 DNA-binding response regulator ResD n=1 Tax=Brya... 86 4e-16 UniRef50_D2Q6K7 Response regulator-like transcriptional regulato... 86 4e-16 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 86 4e-16 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 85 7e-16 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 85 8e-16 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 85 8e-16 UniRef50_Q3Z7C3 Transcriptional regulator, putative n=1 Tax=Deha... 84 9e-16 UniRef50_C7M2G6 Putative two component transcriptional regulator... 84 1e-15 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 84 1e-15 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 84 2e-15 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 83 2e-15 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + Q+ G + + S + ++ LR+K+E DP+ P++ +T G GY Sbjct: 194 LFMRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGY 253 Query: 62 RF 63 RF Sbjct: 254 RF 255 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ + + ++ G +S+ + ++ LR K+E DP+ PR+ T G+G Sbjct: 172 LLFARHPGRAFSRDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVG 231 Query: 61 YRFM 64 YRF Sbjct: 232 YRFA 235 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S ++ + + G ++ HLRQK+E DP PR+ T G+GY Sbjct: 170 LLASNPGRVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGY 229 Query: 62 RFM 64 RF Sbjct: 230 RFA 232 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + ++ G + + + ++ LRQK+E DP+ PRH IT G GY+F Sbjct: 200 RVFSREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 101 bits (253), Expect = 8e-21, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + ++ G++ + S + ++ LR+K+E +P+ P + +T G GY Sbjct: 195 LFMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254 Query: 62 RF 63 R Sbjct: 255 RL 256 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + ++ G + + + ++ LR K+E+DP+ P++ IT G GY+ Sbjct: 196 LAENEGKVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYK 255 Query: 63 F 63 F Sbjct: 256 F 256 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + ++ G + + ++ LR+KLE DP RP + +T G+GY+ Sbjct: 173 LADHPGRVYSRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYK 232 Query: 63 FM 64 F Sbjct: 233 FA 234 >UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y819_COPPD Length = 236 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I +S +++ + ++ G + L ++ LR K+E +P P++ +T G+GY Sbjct: 168 ILMSRAGEVLTREYLLNEIWGADYYGDKRTLDVHIKWLRDKIEPNPNEPKYILTVRGVGY 227 Query: 62 RF 63 +F Sbjct: 228 KF 229 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ ++ G + +N + ++ LR+K+E+DP+ P + +T G+GYRF+ Sbjct: 171 HPNVVLSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFI 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ Q+ L + ++ G + ++ +LR K+E DP P++ T G+GYR Sbjct: 163 LMAAPGQVFSRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYR 222 Query: 63 FML 65 F L Sbjct: 223 FAL 225 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 99 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I ++ ++ + G + + + +M LR+K+E +P+ P++ T+ G+GY Sbjct: 175 ILAVNPGKVYSRDNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGY 234 Query: 62 RFML 65 F + Sbjct: 235 YFNV 238 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 99 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L ++ + + G N I N + ++ LR+K+E+DP+ P + T GIGY Sbjct: 169 LFLQNPRKVFTKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGY 228 Query: 62 RFM 64 + + Sbjct: 229 KLV 231 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 99.5 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ R + N IE N + ++ LR+K+E DP+ P+ T GIGY+ Sbjct: 170 FASNPEQVFTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYK 229 Query: 63 FM 64 F+ Sbjct: 230 FV 231 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 99.5 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ ++ G+ + SN + ++ LR+K+E+DP+ P + +T G+GY+F+ Sbjct: 174 HPNRVLSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFV 232 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 99.5 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 34/62 (54%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + + + G + + + + +++ LR K+E++PA+P++ +T G+GY Sbjct: 170 LFMKNPGRTYSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGY 229 Query: 62 RF 63 +F Sbjct: 230 KF 231 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 99.1 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S ++ R + + N + +M LR+K+E DP+ P++ T GIGY Sbjct: 162 LFASNPKKVFTKEQIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGY 221 Query: 62 RF 63 + Sbjct: 222 KL 223 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 99.1 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + +R + + G + + L ++ LR+K+E +P+ PR+ T G GY Sbjct: 167 MFMENPGKALRREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGY 226 Query: 62 R 62 R Sbjct: 227 R 227 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 98.4 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS ++ I+ + G N + Y+ LR+K+E DP+ P++ IT +GY Sbjct: 162 LLLSSPGRVWTRDMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGY 221 Query: 62 RF 63 +F Sbjct: 222 KF 223 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 98.4 bits (245), Expect = 7e-20, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S ++ + ++ G + + ++ LR K+E+DPA PR +T G+GY+ Sbjct: 181 LASAPDRVYSREQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYK 240 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 98.0 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + S Q+ + + G + + + +++ LR KLE D + P++ +T G+G Sbjct: 168 LYMASHPGQVFSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVG 227 Query: 61 YRF 63 Y+F Sbjct: 228 YKF 230 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 98.0 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L +I+ Q+ G + N + ++ LR+K+E +P+ P + T G+GYR Sbjct: 167 FLRNPNRILSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYR 226 Query: 63 FML 65 + Sbjct: 227 LTV 229 >UniRef50_C0D8Y6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=C0D8Y6_9CLOT Length = 243 Score = 98.0 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + +S ++ + G N+I N + Y+ HLR K+E +P PR+ T G+GY Sbjct: 177 LFISNVGRVFTKEQLYELVWG-NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGY 235 Query: 62 RFML 65 +F + Sbjct: 236 KFTV 239 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 98.0 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++ + + ++ G + + ++ HLR KL+ DP T G+GY Sbjct: 169 LLVTNPGRAFSRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGY 228 Query: 62 RFM 64 RF Sbjct: 229 RFA 231 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 98.0 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + L + + G + + ++ +LR K+E DP PR+ T G+GYR Sbjct: 164 LMASPGHVFSRLDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYR 223 Query: 63 FM 64 F Sbjct: 224 FA 225 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 98.0 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + G ++ + ++ +LR+K+EQDPARP + IT G+GY+ Sbjct: 171 LAENAGRVFSAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYK 230 Query: 63 F 63 F Sbjct: 231 F 231 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 98.0 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S ++ + ++ + N + ++ LR+K+E DP+ P + T G+GY Sbjct: 164 LMASNPNRVFTKAHLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGY 223 Query: 62 RF 63 +F Sbjct: 224 KF 225 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 97.6 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q++ + ++ G + + ++ HLR KLE DP P+ T G GY Sbjct: 168 LYKNANQVLSRDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYE 227 Query: 63 FM 64 F+ Sbjct: 228 FV 229 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 97.6 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ I ++ G + + + L ++ LR K+E DPA P H +T G+GY+ Sbjct: 165 LMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYK 224 Query: 63 F 63 Sbjct: 225 L 225 >UniRef50_Q0RNB1 Putative response regulator (Response regulator protein) (Partial match) n=1 Tax=Frankia alni ACN14a RepID=Q0RNB1_FRAAA Length = 309 Score = 97.2 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + V + ++ G N + L ++ LR+K+E DP+ P H +T GIGYR Sbjct: 192 GRAVTRKQLLERIWGYNYFGGARMLDVHVRRLRRKVEADPSAPTHILTVRGIGYR 246 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 97.2 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L +++ + + G + N + ++ LR+K+E P++P +T G+GY+ Sbjct: 202 FLQHPNRVISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYK 261 Query: 63 FML 65 F++ Sbjct: 262 FVV 264 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 96.8 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ I ++ G + + + L ++ LR K+E+DPA P H +T G+GY+ Sbjct: 166 LMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYK 225 Query: 63 F 63 Sbjct: 226 L 226 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 96.8 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S ++ I ++ G + + ++ LR+K+E DPA P T G+GY+ Sbjct: 181 FMSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYK 240 Query: 63 F 63 F Sbjct: 241 F 241 >UniRef50_C6JFQ6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JFQ6_9FIRM Length = 139 Score = 96.8 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++ + + N + +++ H+R+K+E DP P + T G+GY Sbjct: 71 LLAQNPGRVFSKEQIYDIVWKESYFGDYNIVMSHISHIREKIEDDPGNPVYIQTVWGVGY 130 Query: 62 RF 63 +F Sbjct: 131 KF 132 >UniRef50_Q892Y1 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium tetani RepID=Q892Y1_CLOTE Length = 175 Score = 96.4 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I L + + + G + + + + LR K+E +P+ P++ T G GY Sbjct: 111 IFLENEEKAFSRDELLDLVWGYDFVGDPKIVDVNIRRLRAKIEDEPSNPKYIETVWGKGY 170 Query: 62 R 62 R Sbjct: 171 R 171 >UniRef50_C3IWQ5 Two-component response regulator n=2 Tax=Bacillus thuringiensis RepID=C3IWQ5_BACTU Length = 214 Score = 96.4 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +I + N + ++ LR+KLE P P + T G+GY Sbjct: 144 LFMGDPGRIFTKKQIFESVWSDYYCADDNTIMVHISRLREKLEDSPKNPVYIKTIRGLGY 203 Query: 62 RFM 64 RF Sbjct: 204 RFA 206 >UniRef50_C8W6G9 Putative two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6G9_DESAS Length = 277 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S QI + + ++ N + ++ LR+K+E +P +PR+ T G+GY Sbjct: 212 LMASHPNQIFTRNNLLTTIWEADSAGDDNTVTVHIRRLRKKIEVNPNKPRYIKTVWGVGY 271 Query: 62 RF 63 RF Sbjct: 272 RF 273 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 96.1 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + G + + + ++ HLR+K+E DP +PR T G GY F+ Sbjct: 181 GRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 95.7 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++ + + G + N + +M LR K+E DP P+ T GIGY Sbjct: 169 LFFENPNRVFTKVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGY 228 Query: 62 RF 63 + Sbjct: 229 KL 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 95.7 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + G I N + Y+ LR+K+E +P +P + IT G+GY Sbjct: 176 LLMKHAGRVFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGY 235 Query: 62 RF 63 RF Sbjct: 236 RF 237 >UniRef50_D1CH01 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH01_THET1 Length = 238 Score = 95.7 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + Q++ + + ++ G + L+ ++ LR KL DP +PR+ TE G+GY Sbjct: 165 LLVRHAGQVLPHDLIMERVWGPTYVGDHQLLKVFIRRLRHKLGDDPEQPRYIQTEWGMGY 224 Query: 62 RFM 64 RF+ Sbjct: 225 RFV 227 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 95.7 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS ++ I + G ++ + ++ +LR+K+EQ+P PR T G GY Sbjct: 170 LFLSHPGKVFSREELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGY 229 Query: 62 RF 63 ++ Sbjct: 230 KY 231 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 95.7 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S ++ I ++ G + + ++ LR+K+E DP+ P T G+GYR Sbjct: 199 FMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPDPSAPTFVKTVVGVGYR 258 Query: 63 F 63 F Sbjct: 259 F 259 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 95.3 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + + G + N + Y+ +R+K+E +P+ P + T G+GY+ Sbjct: 169 LAKNRNQVFSKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYK 228 Query: 63 F 63 F Sbjct: 229 F 229 >UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX3_CLOBU Length = 234 Score = 94.9 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ + G + + ++ +LR+K+E+DP P++ T GIGY+ Sbjct: 170 LMKYPGRVYSKAQLYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYK 229 Query: 63 FML 65 + Sbjct: 230 IEV 232 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 94.9 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 +I ++ I ++ G++ + ++ +LR K+E DP P + T G+G Sbjct: 166 VILSRHPRRVFSREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMG 225 Query: 61 YRF 63 YRF Sbjct: 226 YRF 228 >UniRef50_D0AFB3 Putative uncharacterized protein n=4 Tax=Firmicutes RepID=D0AFB3_ENTFC Length = 103 Score = 94.5 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 5 SVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 S Q+ + + G + I ++N + +++ LR+K+E +P P++ +T G+GY+F Sbjct: 40 SHKGQVFTKEQLYQNVWGDDDIPNANNMTSFIRKLRKKIEPNPDNPQYILTVWGVGYKF 98 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 94.5 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + ++ G + + S + ++ +R+K+E D P+ T G GYRF Sbjct: 177 NPNIVFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRF 234 >UniRef50_A6EAJ4 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) n=1 Tax=Pedobacter sp. BAL39 RepID=A6EAJ4_9SPHI Length = 206 Score = 94.1 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + L +++ + ++ G N+ ++ L ++ LR+K+E +P P+ T GIG Sbjct: 141 LYFLRNPNKVINRDALMLEVWGYNSDVNTRTLDMHIVRLRKKIEANPDNPQLLQTVRGIG 200 Query: 61 YRF 63 YRF Sbjct: 201 YRF 203 >UniRef50_Q067N9 Two component transcriptional regulator, winged helix family protein n=1 Tax=Synechococcus sp. BL107 RepID=Q067N9_9SYNE Length = 234 Score = 94.1 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ I Q+ G++ I + ++ LR+K+E +P+ P T G GY Sbjct: 172 LFIQNPKRVWSRDDLIDQIWGVDYIGDRKTVDVHIRWLREKIEANPSDPTKLSTVRGFGY 231 Query: 62 RF 63 RF Sbjct: 232 RF 233 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 94.1 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + + Y+ +R+K+E++P PR+ T G GYR Sbjct: 166 LARHPGRVFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYR 225 Query: 63 FML 65 F + Sbjct: 226 FEV 228 >UniRef50_Q24Q12 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24Q12_DESHY Length = 168 Score = 93.7 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q+ + G + S + ++ +R+K+E DP RP + +T G+GY+F Sbjct: 109 HPGQVFTRQQLFDNLWGEKYLGDSGTITVFIRKVREKVELDPGRPEYILTVWGVGYKFA 167 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 93.7 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + Q+ + + + ++ LR+K+E +P+ P T GIGY+ Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 93.7 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + G + Y+ +R+K+E DP PR T G GYR Sbjct: 166 LARHPGRVFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYR 225 Query: 63 FML 65 F + Sbjct: 226 FEI 228 >UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q488W3_COLP3 Length = 260 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + + G + + + + +++ LR KLE+D P+ T G+GY+ Sbjct: 187 FCQHPDQVFSRAQLLDGVWGYHHNGYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGYK 246 Query: 63 F 63 Sbjct: 247 L 247 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + + + ++ G + + + + ++G LR+K+E +P P++ T G G Sbjct: 176 LYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYG 235 Query: 61 YRF 63 Y+F Sbjct: 236 YKF 238 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + + ++ G + + + + ++ LR+KLE DPA P T GIGY Sbjct: 165 LMHNAGVALSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYC 224 Query: 63 F 63 F Sbjct: 225 F 225 >UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostridia RepID=B0S1J7_FINM2 Length = 239 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S +I I G + + ++ ++R K+E +P +PR+ T G+GY+ Sbjct: 173 LFSNPNKIFTRDEIIELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYK 232 Query: 63 FML 65 + Sbjct: 233 LGV 235 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 Q++ ++ + G + + + LR+K+E DP+ P + +T G+GY Sbjct: 169 LSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S QI L + Q+ + + + ++ LR+K+E+D A+P T G+GY Sbjct: 166 LMASHPNQIFSRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGY 225 Query: 62 RF 63 +F Sbjct: 226 KF 227 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + Q+ +++ G + + ++G LR+K+E+DPA PR+ +T G+GY Sbjct: 166 LFAEHPRQVFTREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGY 223 Query: 62 RF 63 RF Sbjct: 224 RF 225 >UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6_BACP2 Length = 240 Score = 93.4 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ ++ G+ + +N + ++ LR+K+E DP++P + +T G+GY+F+ Sbjct: 174 HPNVVLSKDQIYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKFI 232 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 93.0 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + QI + G + + N + +M HLR+K+E +P++P + IT G+G Sbjct: 171 LFLIKNPNQIFSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLG 230 Query: 61 YRF 63 Y+ Sbjct: 231 YKL 233 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 93.0 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + QI+ + + + L ++ LRQ++E D P++ +T G+GY+ Sbjct: 163 FMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHIARLRQRIEHDRTNPQYIVTVYGLGYK 222 Query: 63 FM 64 F+ Sbjct: 223 FV 224 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 93.0 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + + G + + ++ +R+KLE+DP+RPR+ T+ G+GY Sbjct: 164 LLARHPGVVYTRQELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 Query: 62 RF 63 Sbjct: 224 YL 225 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 93.0 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ +++ + ++ + G + + YLR Y+G LR+KLE DP+ PRH +TE GIGYR Sbjct: 169 LITHPNKVLTHRMLLQHVWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYR 228 Query: 63 FM 64 F+ Sbjct: 229 FV 230 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 92.6 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ + + ++ G + S+YLR Y+ +LRQK+E+DP+ PR+ +TE G+GYR Sbjct: 170 LVQNAGYVLTHEMLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYR 229 Query: 63 FM 64 F+ Sbjct: 230 FV 231 >UniRef50_C2EBW1 Two-component response regulator n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EBW1_9LACO Length = 247 Score = 92.6 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 C Q++ ++ + G + + S + ++ HLR KLE DP P T G GY Sbjct: 179 LAKHCGQVLSREQLLQGVWGYDILGTSRIVDIHISHLRDKLEADPNTPLWIKTNRGFGYS 238 Query: 63 F 63 F Sbjct: 239 F 239 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 92.6 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + +++ + + G + + ++ LR+KL +DP PR T +G Sbjct: 177 LTLAKFPARVLSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVG 236 Query: 61 YRF 63 Y F Sbjct: 237 YMF 239 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 92.6 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + C + V + Q+ G +A + + ++ LRQKLE++P PR+ T G+GY+ Sbjct: 166 LIDHCGETVTREDLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYK 225 Query: 63 F 63 Sbjct: 226 L 226 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 92.2 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I ++V + + G ++YLR YM LR+KLE DPA PR+ TE GIGY Sbjct: 161 ILARHAGRLVTTRQLLHDVWGPTYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGY 220 Query: 62 RFML 65 R ++ Sbjct: 221 RLVV 224 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 92.2 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +I + + N + + LR+K+E P P + T G+GY Sbjct: 168 LFMGEPGRIFTKKQIFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGY 227 Query: 62 RFM 64 RF Sbjct: 228 RFA 230 >UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinomycetales RepID=A9WLJ1_RENSM Length = 248 Score = 92.2 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L Q+ +R + G + S + + LR K E DP+ P+ +T G GYR Sbjct: 184 LLQHPGQVRSREQLLRSVWGAEYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYR 243 Query: 63 F 63 F Sbjct: 244 F 244 >UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Tax=Bacteria RepID=GLNR_STRCO Length = 267 Score = 92.2 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ ++++ G + + + ++ LR KL P T +GYR Sbjct: 161 LAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLG--PEHESLIGTVRNVGYR 218 Query: 63 FM 64 F+ Sbjct: 219 FV 220 >UniRef50_C2E0K8 Response regulator PhoP n=9 Tax=Lactobacillus RepID=C2E0K8_9LACO Length = 238 Score = 92.2 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ ++++ G + + S + ++ HLR KLE D + P+H +T+ G GYR Sbjct: 177 LAQNKGNVISREQLLQKIWGYDLLGSSRIVDIHISHLRDKLEDDSSHPQHILTKRGFGYR 236 Query: 63 FM 64 F+ Sbjct: 237 FI 238 >UniRef50_C6XZP6 Response regulator receiver n=3 Tax=Sphingobacteriaceae RepID=C6XZP6_PEDHD Length = 233 Score = 92.2 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + L +++ + + G N+ ++ L ++ LR+K+E +P P+ T G+G Sbjct: 168 LYFLRNPNKVINRDELMLVVWGYNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVG 227 Query: 61 YRF 63 YRF Sbjct: 228 YRF 230 >UniRef50_B0MRC9 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRC9_9FIRM Length = 222 Score = 92.2 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ + +I+ Q+ G ++ L ++ LRQK+E DP P+H T G+G Sbjct: 157 VLLIENKGRILTKEYLFNQIWGSDSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVG 216 Query: 61 YRF 63 Y++ Sbjct: 217 YKY 219 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 92.2 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++V + G I N + ++ LR K+E+DPA P+ T G+GYR Sbjct: 170 LAERPNRVVTIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYR 229 Query: 63 FM 64 + Sbjct: 230 LV 231 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 92.2 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 L + L + G + + ++ +LR+K+E+DPA P + T GIGY Sbjct: 164 AFLKNPGKAYSRLELLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGY 223 Query: 62 RF 63 + Sbjct: 224 KL 225 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 91.8 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 S ++ + G + ++ + ++ LR+K+E DP+ PR T GIG Sbjct: 166 FALASSPGLVLSKEQLVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIG 225 Query: 61 YRF 63 YRF Sbjct: 226 YRF 228 >UniRef50_UPI00017F4CF5 two-component response regulator n=2 Tax=Clostridium difficile RepID=UPI00017F4CF5 Length = 124 Score = 91.8 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + QI+ ++ G + + N + ++ +R+KLE +P++P + +T G+GY Sbjct: 58 LFAHNQNQIISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGY 117 Query: 62 RFML 65 + + Sbjct: 118 KLAV 121 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L + + + G + + + ++ LR+K+E DP PR +T G+GYR Sbjct: 219 LLRRPGRAFTRGELLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 Query: 63 F 63 + Sbjct: 278 Y 278 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I ++ Q++ + ++ G + + + + ++ HLRQK+ + P T GIGY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 62 RF 63 R Sbjct: 241 RL 242 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S Q + + ++ G N + + + +R K+E DP++P++ T G GY Sbjct: 180 LISNAKQSLSRDQILDEVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYC 239 Query: 63 F 63 F Sbjct: 240 F 240 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +S + + G + + ++ +R+KLE DP+ PR+ T G GY Sbjct: 171 ALISHKGTPLTRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGY 230 Query: 62 RFM 64 + Sbjct: 231 MWA 233 >UniRef50_B9T9H2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T9H2_RICCO Length = 104 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M+ S I + + Q+ G + I+ ++YLR ++G LR KLE P+ P+ +TE GIG Sbjct: 41 MLLASKPGTIFTHSQLLAQVWGPDYIDDTHYLRIHIGRLRAKLEDQPSAPQILLTELGIG 100 Query: 61 YRFM 64 YR Sbjct: 101 YRLA 104 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 91.8 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q I+++ G + + + ++G LR+K+E DP+ P T G GY+ Sbjct: 170 LASHPNQAWSRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYK 229 Query: 63 F 63 F Sbjct: 230 F 230 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 91.8 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M+ + + Q+ G++ + ++ +LR+K+E++P++P+ T G G Sbjct: 165 MLLVENKNHVFSAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFG 224 Query: 61 YRF 63 Y+F Sbjct: 225 YKF 227 >UniRef50_C8WJL3 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WJL3_EGGLE Length = 234 Score = 91.4 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S ++ + + + + ++ ++R K+E DP P H +T G+GYR Sbjct: 172 LFSSPGRVYTKAQLYELISASSHGGGEDSIMVHISNIRSKIEDDPNNPAHIVTVRGLGYR 231 Query: 63 F 63 F Sbjct: 232 F 232 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 91.4 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + +S ++ ++ SN + ++ H+R+K+E DP P + T GIGY Sbjct: 162 LLVSNLGKVFTKKQIYEEVWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGY 221 Query: 62 R 62 + Sbjct: 222 K 222 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 91.4 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 42/62 (67%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ ++ + ++ + G +E S+Y+R YMG+LR+K+E DPARP+H TE G+GYR Sbjct: 167 LIANPDCVLTHRQLLKNVWGPGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYR 226 Query: 63 FM 64 F+ Sbjct: 227 FV 228 >UniRef50_A5V0J0 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexaceae RepID=A5V0J0_ROSS1 Length = 229 Score = 91.4 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ + ++ G + SN + Y+ LR K+E D PR+ IT +GY+ Sbjct: 164 LMQNTGRVLSASQILSKVWGYDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYK 223 Query: 63 FML 65 F++ Sbjct: 224 FVV 226 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 91.4 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q V +++ G + + + ++ LR KLE +P PR+ +T G GYR Sbjct: 164 LFRSAGQTVDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYR 223 Query: 63 FML 65 F++ Sbjct: 224 FVV 226 >UniRef50_B6FPY5 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPY5_9CLOT Length = 114 Score = 91.4 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ + + G + ++GH+R+K+E DP P T GIGY+ Sbjct: 50 LASYPGQVFTHRQIYETVWGKEYFCDEGNVTAHIGHIRKKIELDPRNPVFIQTVRGIGYK 109 Query: 63 FM 64 F Sbjct: 110 FA 111 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 91.4 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + + + ++ LRQK+E+ P+ T G+GY+ Sbjct: 180 LAKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEE--VGPQVIQTVWGVGYK 237 Query: 63 F 63 F Sbjct: 238 F 238 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 91.0 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L + + + + G ++ + ++ LRQKLE DP P+HF+T G+GYR Sbjct: 173 FLHNPDRPLTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYR 232 Query: 63 FM 64 F+ Sbjct: 233 FI 234 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 91.0 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 42/63 (66%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L+ +++ + +R++ G + + S YLR YMGHLR KLE DPARP + +TE G+GY Sbjct: 168 VLLAHRGKVMTHRELLREVWGPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEIGVGY 227 Query: 62 RFM 64 RF Sbjct: 228 RFA 230 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 91.0 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q+ M + ++ + ++ LR+K+E+DPA+P++ T GIGY+F Sbjct: 175 HPDQVFTREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 91.0 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 42/64 (65%), Positives = 51/64 (79%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L+ +++ + Q+ G NA+EHS+YLR YMGHLRQKLEQDPARPRHFITETGIGY Sbjct: 162 VLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221 Query: 62 RFML 65 RFML Sbjct: 222 RFML 225 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 90.7 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS Q+ + + G N + +Y+ ++RQK+E + P + T G+GY Sbjct: 168 VFLSNPTQVFSREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGY 227 Query: 62 RFM 64 +F+ Sbjct: 228 KFI 230 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 90.7 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ + + ++ G E + YLR Y+G LR+KL+ P P+ +TE G+GYR Sbjct: 167 LVQNAGKVMTHQMLLNRVWGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYR 226 Query: 63 FM 64 F+ Sbjct: 227 FV 228 >UniRef50_B1HYB3 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=B1HYB3_LYSSC Length = 233 Score = 90.7 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q++ ++ G + + N + ++ LR+K+E++P +P IT GIGY+ Sbjct: 168 LCDNAGQVLSKEQIYERVWG-DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYK 226 Query: 63 FM 64 + Sbjct: 227 LV 228 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 90.7 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L+ Q+ L I ++ + + +++ +LR+KL P P + T G+GY Sbjct: 164 LFLAHPGQVFSRLQLIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGY 223 Query: 62 RFM 64 + + Sbjct: 224 KLV 226 >UniRef50_C7G9Y4 DNA-binding response regulator n=6 Tax=Bacteria RepID=C7G9Y4_9FIRM Length = 167 Score = 90.7 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + + N + +++ ++R+K+E +P++P + T G+GY Sbjct: 100 LLAKHSGIVFSKEQIYDIVWKESYSGDYNIVMSHIRNIREKIEDNPSKPIYIQTVWGVGY 159 Query: 62 RF 63 RF Sbjct: 160 RF 161 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 90.7 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M L + I G + + + ++ ++RQK+E +P P++ IT G G Sbjct: 167 MTLLKYPNKTFTREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTG 226 Query: 61 YRF 63 YRF Sbjct: 227 YRF 229 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q++ + + G N + + LRQK+E++PA P+ T G GY+ Sbjct: 166 FIKNEDQVMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 Q+ + ++ L+A + ++ ++ HLR+K+E+ P RP + T G GYR Sbjct: 164 FAKHPNQVWTHEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYR 223 Query: 63 FM 64 F+ Sbjct: 224 FV 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L+ + + G + + + N+M LR K E DP PRHF+T G+GYR Sbjct: 170 FLAHPGRTFTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYR 229 Query: 63 F 63 F Sbjct: 230 F 230 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + + G + + + ++ LR K+E DPA P +T G GY+ Sbjct: 171 FARHPGKVFSRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYK 230 Query: 63 FM 64 Sbjct: 231 LA 232 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ G A+ S + ++ +R+K+E+DPA PR+ T G GYR Sbjct: 167 LAEHPNIVFSREALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYR 226 Query: 63 F 63 F Sbjct: 227 F 227 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXG-LNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + QI + +N + ++ +LR+K+E+DPA P + T G GY Sbjct: 171 LMKNPKQIFSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGY 230 Query: 62 RF 63 RF Sbjct: 231 RF 232 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 2 IALSVCWQIVRYLCRIR-QMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 I S ++ + + M G + ++ +LR+KLE DP++P + +T G+G Sbjct: 165 ILASAPDRVFSRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVG 224 Query: 61 YRF 63 Y+F Sbjct: 225 YKF 227 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 5 SVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +I+ ++ G + + + LR+KLE +P+ P++ T GIGYRF Sbjct: 185 KHQGKILTKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q++ ++ + G + S + + HLR+K+E DP RP++ T G GY Sbjct: 174 LVGHENQVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYE 233 Query: 63 F 63 F Sbjct: 234 F 234 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++ + Q+ G + + ++ +LR +L D P T G+GY Sbjct: 166 ALVRAPGRVFSRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGY 225 Query: 62 RFM 64 +F+ Sbjct: 226 KFI 228 >UniRef50_C4W819 Two component transcriptional regulator, winged helix family n=3 Tax=Staphylococcus RepID=C4W819_STAWA Length = 225 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S QI+ ++ G N L ++ LR+K+E++P +P+ T G GY Sbjct: 159 FISNKNQILSKEQIYSKVWGYETFVDDNTLMVHIRTLRRKIEENPNQPKFIKTMRGKGYI 218 Query: 63 F 63 F Sbjct: 219 F 219 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S +++ + + + + +G LR+K+E DP PRH IT GIGY Sbjct: 169 FASRPGRVMTRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYV 228 Query: 63 FM 64 F Sbjct: 229 FA 230 >UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692EE0 Length = 230 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S + R ++ ++++ L ++ +LR+K+E +PA P++ IT G+GY Sbjct: 167 LLASNPNHVFRIEELFEKVWSVDSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGY 226 Query: 62 RF 63 +F Sbjct: 227 KF 228 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 90.3 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ + ++ GL+ S + ++ LRQKL + T G GYR Sbjct: 162 LASHPKQVFSREHLLDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYR 221 Query: 63 FML 65 F++ Sbjct: 222 FVV 224 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 89.9 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I S ++ I + G+ + ++ +LR+K+E+D P++ +T T IGY Sbjct: 162 ILASNQGKVFTREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGY 221 Query: 62 RF 63 +F Sbjct: 222 KF 223 >UniRef50_D1VGE4 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VGE4_9ACTO Length = 271 Score = 89.9 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 41/62 (66%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + LS ++V + ++ G N ++YLR Y+ LRQKLE+DPARPRH +T+ G+GY Sbjct: 208 VLLSHPGKLVTQRQLLTEVWGANYGSETHYLRTYLNRLRQKLEEDPARPRHLLTDPGMGY 267 Query: 62 RF 63 RF Sbjct: 268 RF 269 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 89.9 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q++ + G A E N + ++ +R+KLE P +P T G+GYR Sbjct: 170 FMRHPNQVLTVEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYR 229 Query: 63 F 63 Sbjct: 230 L 230 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 89.5 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L ++ + N + ++ +LR K+E D P + T G+GY+ Sbjct: 168 LLENKGKVFTKKQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYK 227 Query: 63 F 63 Sbjct: 228 L 228 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 89.5 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L ++ + ++ G + SN + ++ LR+KL + +RP + T G+GYR Sbjct: 203 LLEHEGTVLSREELLSEVWGTTFLGGSNVVDVHIKSLRKKLGDNASRPTYITTVRGVGYR 262 Query: 63 FM 64 Sbjct: 263 LA 264 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 89.5 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ + + ++ G + + + +++ +LR K+ +P P+ T G+GYRF Sbjct: 175 PGRVYSRMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 89.5 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 Q I+++ G + + + ++G LR+K+E D + P T G GY+F Sbjct: 194 HPGQAWSRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF 251 >UniRef50_B0MNE2 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B0MNE2_9FIRM Length = 232 Score = 89.5 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 9 QIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++V + ++ G++ + + L ++G LR+KL D T G+GYRF+ Sbjct: 175 RVVSREELLTKVWGIDFVGETRTLDMHIGTLRKKLSDDAENAHLIKTVRGVGYRFI 230 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L ++ + G +A+ + N + ++ LR K+E D P + T G+GY Sbjct: 172 LFLLNPNKVFTKSQIYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGY 231 Query: 62 RF 63 + Sbjct: 232 KL 233 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 1 MIALSV-CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGI 59 +I L+ + + + G N + + + +++ LR K+E D P + +T GI Sbjct: 171 LILLANYPGRSYSRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGI 230 Query: 60 GYRF 63 GYRF Sbjct: 231 GYRF 234 >UniRef50_A9AWE4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWE4_HERA2 Length = 975 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 Q++ + ++Q+ G + E YL Y+ LR KLE DP P+ +E+GIGYRFM Sbjct: 173 GQVLTHRMLLQQVWGKSYSEDRAYLHAYIRRLRAKLEDDPTNPQLIHSESGIGYRFM 229 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L Q ++ + G + + + LR+K+E DP P T G+GYR Sbjct: 201 LLKHPGQAFSREQLLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYR 259 Query: 63 F 63 Sbjct: 260 L 260 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + G+N + + LRQK+E DP+ P + T G GY+ Sbjct: 172 VLSRDALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYK 224 >UniRef50_A9BR19 Two component transcriptional regulator, winged helix family n=30 Tax=cellular organisms RepID=A9BR19_DELAS Length = 252 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +++ + + G + +MG +R +E DP P+ +T G+GY Sbjct: 187 LAERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYV 246 Query: 63 FM 64 F Sbjct: 247 FA 248 >UniRef50_B2G959 Two-component response regulator n=13 Tax=Lactobacillus RepID=B2G959_LACRJ Length = 236 Score = 89.1 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q++ + + G + ++ S + ++ HLR KLE D P H +T G GY+ Sbjct: 175 LVDHKGQVLNRDQLVNGVWGYDILDTSRIVDIHISHLRDKLEDDSQHPTHLLTVRGFGYK 234 Query: 63 FM 64 F+ Sbjct: 235 FV 236 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 88.7 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + +++ + + + + + + ++ HLR K+EQ+ P + +T +G Sbjct: 165 LFLCKHRGKVLSRQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVG 224 Query: 61 YRF 63 Y+ Sbjct: 225 YKL 227 >UniRef50_C6D5Y8 Putative two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5Y8_PAESJ Length = 255 Score = 88.7 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ L+ ++ + G SN + ++ LR+KL+ P + T G+G Sbjct: 187 LMFLTSDGAVLTREAMFDAVWGSQYFGGSNVVDVHIKTLRRKLKDSAVAPHYIATVRGVG 246 Query: 61 YRFM 64 YR + Sbjct: 247 YRLV 250 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 88.7 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFML 65 ++ + GL++I S + ++ +R+K+E +P++P++ T G+GYR + Sbjct: 173 PNRVFGKDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_Q39SW2 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=Q39SW2_GEOMG Length = 233 Score = 88.7 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 41/62 (66%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +++ + +RQ+ G++ +E + LR + +LR+K+E DP+RPRH +TE G+GY Sbjct: 167 LLVVHAGKVLTHSQILRQIWGVSHLEQPHVLRVNISNLRRKIEMDPSRPRHILTEPGVGY 226 Query: 62 RF 63 R Sbjct: 227 RL 228 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 88.7 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + + G+ + +++ +R KLE++ A+P T GIGY Sbjct: 169 LMAASPGKVFSREMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGY 228 Query: 62 RF 63 RF Sbjct: 229 RF 230 >UniRef50_B0SY74 Two component transcriptional regulator, winged helix family n=2 Tax=Caulobacter sp. K31 RepID=B0SY74_CAUSK Length = 235 Score = 88.7 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 36/57 (63%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + + G + + YLR ++G LRQKLE DP+ PR +TE GIGYRF+ Sbjct: 177 GKVLTHKDLLTAVWGPAHAQDTQYLRVFVGQLRQKLEADPSTPRMILTEPGIGYRFI 233 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 88.7 bits (220), Expect = 6e-17, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + G++ I + + ++ +LR+K+E+DPA P+ +T GIGY Sbjct: 169 LLSQHPNMVFSLTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGY 228 Query: 62 RF 63 + Sbjct: 229 KL 230 >UniRef50_D2QGK1 Two component transcriptional regulator, winged helix family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGK1_9SPHI Length = 244 Score = 88.4 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S + + + G + + + + ++ LR K+E D RP + +T GIGY Sbjct: 169 LLASYPGKSFSRQKILSLVWGYHHDGYEHTVTAHINRLRIKIEPDFTRPIYILTTWGIGY 228 Query: 62 RFM 64 RF Sbjct: 229 RFA 231 >UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria RepID=Q3K1Z3_STRA1 Length = 234 Score = 88.4 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I +S +I ++ G + ++ ++R K+E D P++ T G+GY Sbjct: 166 ILMSSPGRIYTKTQLYEKINGRYLEGDETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGY 225 Query: 62 R 62 + Sbjct: 226 K 226 >UniRef50_A8MLN3 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A8MLN3_ALKOO Length = 231 Score = 88.4 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q+ + N+I N + Y+ LR+KLE + P+H +T GIGY+ Sbjct: 170 FMENPGQVFTKEQLYENIW-NNSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYK 228 Query: 63 FM 64 F+ Sbjct: 229 FI 230 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 88.4 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKL--EQDPARPRHFITETGIG 60 + Q+ + Q+ G + ++ LR+KL E P T G+G Sbjct: 166 LVQNPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVG 221 Query: 61 YRF 63 Y+F Sbjct: 222 YKF 224 >UniRef50_C1XV31 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Meiothermus RepID=C1XV31_9DEIN Length = 256 Score = 88.4 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++V + ++ G + S + N++ LR+ E DPA P + T G+GY Sbjct: 177 LLAERAGEVVSRDEILDRVWGGDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGY 236 Query: 62 RF 63 RF Sbjct: 237 RF 238 >UniRef50_D0KIR4 Two component transcriptional regulator, winged helix family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KIR4_PECWW Length = 204 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 46/62 (74%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L+ +++ + Q+ G NA+EHS+YLR YMGHLRQKLE DPARPRH +TET IGYR Sbjct: 142 LLANPGKVLTQRQLLTQVWGPNAVEHSHYLRIYMGHLRQKLESDPARPRHLLTETAIGYR 201 Query: 63 FM 64 F+ Sbjct: 202 FI 203 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ + + + G + S + ++ LR+K+E DP+RP H ITE G+G Sbjct: 171 LLMARRPNVVFTRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVG 230 Query: 61 YRFM 64 YR + Sbjct: 231 YRIV 234 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 L +IV + ++ G + + N + LR+K+E DP P + T G GY Sbjct: 171 ALLEKPGEIVTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGY 230 Query: 62 RFM 64 F+ Sbjct: 231 AFV 233 >UniRef50_Q5SMC3 Response regulator n=4 Tax=Deinococci RepID=Q5SMC3_THET8 Length = 223 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ ++ + ++ G + Y+ LR+KL DP PR T G+G Sbjct: 158 LVFAQAPGRVFTRGELLERVWGPEFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLG 217 Query: 61 YRF 63 YRF Sbjct: 218 YRF 220 >UniRef50_C4IFN3 Transcriptional regulator n=15 Tax=Bacteria RepID=C4IFN3_CLOBU Length = 167 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + + + + ++ LR+K+E +P P + IT G+GY+ Sbjct: 103 LAQNQGTVFTKEQIYNAVWDEDYFLSDSNIMAFIRKLRKKIEPNPDEPIYIITIWGVGYK 162 Query: 63 F 63 F Sbjct: 163 F 163 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 88.0 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 1 MIAL-SVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGI 59 +I + S +++ + ++ + G E +Y+R +M +LR+K+E++ + PRH ITE GI Sbjct: 163 LIFMTSQPDRVITHQQLLKAIWGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGI 222 Query: 60 GYRFM 64 GYRF+ Sbjct: 223 GYRFV 227 >UniRef50_A4IPQ9 DNA-binding response regulator n=16 Tax=Bacillales RepID=A4IPQ9_GEOTN Length = 222 Score = 88.0 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 28/60 (46%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L QI+ + G IE L ++ +LR+KLE+DP P T GIGYR Sbjct: 160 FLRHLNQILTKEQLYEGVWGEPYIEGDKTLMVHIRYLREKLEKDPKNPEIIETIRGIGYR 219 >UniRef50_A6NWH9 Putative uncharacterized protein n=2 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NWH9_9BACE Length = 147 Score = 88.0 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 5 SVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 S Q+ G + +N + N + LR+KLE DP P + T G+GY+ + Sbjct: 78 SSPGQVFSKAQLYAAAWGEEYLHGTNSVENIIWRLRKKLEPDPRNPIYIKTVIGMGYKMV 137 Query: 65 L 65 + Sbjct: 138 V 138 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M LS Q++ + + + + +G +R+KL+ +PA PR +T G G Sbjct: 175 MALLSHAGQVLSRDQLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAG 234 Query: 61 YRFM 64 Y F Sbjct: 235 YLFA 238 >UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Tax=Actinomycetales RepID=C1A1E5_RHOE4 Length = 226 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++V +R++ G ++YLR Y+ LR+KLE DPA P+H ITE G+GY Sbjct: 163 MLVRNRGKLVGQKELLREVWGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGY 222 Query: 62 RFML 65 RF++ Sbjct: 223 RFVV 226 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S + ++ +A + + + LR+K+E +PA+PR T GIGY Sbjct: 164 LMASHPGHPFTRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGY 223 Query: 62 RF 63 +F Sbjct: 224 KF 225 >UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifidobacteriaceae RepID=B7GTW3_BIFLI Length = 266 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ ++++ G + + + ++ LR KL + T +GYR Sbjct: 172 LVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEH--LIGTVRNVGYR 229 Query: 63 F 63 F Sbjct: 230 F 230 >UniRef50_C1ABQ2 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABQ2_GEMAT Length = 233 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 ++ + + + + G + + YLR Y+GHLR+KLE DP RP +TE G+GY Sbjct: 168 ALVTHAGRTMTHKQLFDAVWGRHHGDAQQYLRVYIGHLRRKLEVDPLRPTLIVTEGGVGY 227 Query: 62 RFM 64 RF Sbjct: 228 RFA 230 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 QI+ + + G S + ++ LR+KLE+DP+RPR T G GY F Sbjct: 174 HPNQILSKHQIYKDVWGEFYGGDS-TVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIF 230 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ + + G I + + ++ LR+K++ + T GIGY+ Sbjct: 175 LASHPNQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISW--RLSTVWGIGYK 232 Query: 63 FML 65 F + Sbjct: 233 FEV 235 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I + ++ + ++ G + + + + ++ +LR K+E + ++ +T G+GY Sbjct: 168 IFIQNSGKVFSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIECE--YYKYIVTVYGVGY 225 Query: 62 RFM 64 RF+ Sbjct: 226 RFV 228 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 87.6 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + WQ+ + Q+ G + + ++ LR K+E+DP P +T G+G Sbjct: 189 VALARKPWQVFTRELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVG 248 Query: 61 YR 62 Y+ Sbjct: 249 YK 250 >UniRef50_B5EH76 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=B5EH76_GEOBB Length = 246 Score = 87.2 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++ +++ + ++Q+ G+ +E N LR + +LRQK+E DP+RP + TE G+GY Sbjct: 182 LLVTHAGRVLTHSQILKQIWGVAYVEQQNVLRVNIRNLRQKIEPDPSRPFYITTEVGVGY 241 Query: 62 RF 63 R Sbjct: 242 RL 243 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 87.2 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L + Y + ++ + + + +R ++ LR+K+E +P P++ + GIGY Sbjct: 165 LFLEHPRHVFSYDQLLDKL--WDGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGY 222 Query: 62 RF 63 RF Sbjct: 223 RF 224 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 87.2 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +I Q+ GL +I + ++ LR+K+E++P P + + GIGY+ Sbjct: 183 LCTHPNRIFTAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYK 242 Query: 63 FM 64 F+ Sbjct: 243 FI 244 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 87.2 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q+ R++ G + +N + + LR+K+E+ P++PR +T G+GY+ Sbjct: 182 LAANSGQVFDREVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYK 241 Query: 63 FM 64 Sbjct: 242 LA 243 >UniRef50_UPI00017890B9 putative two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017890B9 Length = 272 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M+ L + + ++ + + SN + ++ LR+KL + PR+ T G+G Sbjct: 208 MLLLDSEGAVCTREDLMCKIWDTDFMGGSNVVDVHIKSLRKKLNDNAGAPRYIATVRGVG 267 Query: 61 YRFM 64 YR Sbjct: 268 YRLA 271 >UniRef50_Q97MA9 Response regulator (CheY domain, HTH domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97MA9_CLOAB Length = 235 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 I+ + + + + + N + ++ LRQKLE DP+ P++ +T G+GY+ Sbjct: 180 ILSKEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKL 233 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + Q+ + Q+ G + + ++ LR K+E+DP +P +T G+G Sbjct: 173 VALARKPRQVFTRELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVG 232 Query: 61 YR 62 Y+ Sbjct: 233 YK 234 >UniRef50_D1YA87 Transcriptional regulatory protein, C-terminal domain protein n=2 Tax=Propionibacterium acnes RepID=D1YA87_PROAC Length = 237 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ + + G + + + ++ LR K+ P H T +GYR Sbjct: 175 LVGHPGRVLTRDLLLSDVWGYDYYGGTRTVDVHIRRLRAKVG--PEYEGHIQTVRSVGYR 232 Query: 63 F 63 F Sbjct: 233 F 233 >UniRef50_D0WFD8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD8_9ACTN Length = 242 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + G + + + +M LR K+E DP PR T G+GYR Sbjct: 172 LMEHPGVVFSKNQLTEAGWGKEFVGETTTITVFMKKLRSKVEDDPTDPRIIETVWGVGYR 231 Query: 63 F 63 Sbjct: 232 L 232 >UniRef50_UPI0001C31E43 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31E43 Length = 251 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 ++ ++ +R + G +A + ++ HLR+KLE +P PRH +T G GY Sbjct: 187 ALMADPGRLRNRQELLRAIWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGY 246 Query: 62 RF 63 R Sbjct: 247 RL 248 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + +I + ++ E N + + LR+K+E+DP+ PR T G+GY Sbjct: 162 LLFKNPNRIFTKEQIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGY 221 Query: 62 R 62 + Sbjct: 222 K 222 >UniRef50_B8FQL7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQL7_DESHD Length = 234 Score = 86.8 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEH-SNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + Q+ G + + +N + ++ +LRQK+E DP P++ +T G GY Sbjct: 172 LVRNRGTVFSVQNLYEQLLGESYLPSANNTVMVHIRNLRQKIEADPQHPKYILTVWGEGY 231 Query: 62 RFM 64 +F Sbjct: 232 KFA 234 >UniRef50_B6FYV2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYV2_9CLOT Length = 232 Score = 86.4 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +++ + ++ G + + ++ +LR+KLE+ A ++ T G+GY+ Sbjct: 174 NRGKVLSRNFLLDEIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYK 230 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 86.4 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 41/63 (65%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + +++ + +R++ G + ++YLR ++ LR+K+E DPARP++ +TE G+G Sbjct: 170 ITMIKHAGKVLTHRFLLREVWGPQDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVG 229 Query: 61 YRF 63 YRF Sbjct: 230 YRF 232 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 ++ +++ I + G + + LR+K+E DPARP + T G GY Sbjct: 297 AMVAHPNRVLSRDQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGY 356 Query: 62 RF 63 F Sbjct: 357 LF 358 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 10 IVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 + I ++ G + + + + ++GHLR+KL+ D +R ++ T G+GYR Sbjct: 239 VFSRRQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + +I I G N + + +++ +LR K+E +P P + +T GIG Sbjct: 172 ITMIRYPGKIFTREELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIG 231 Query: 61 YRF 63 Y+F Sbjct: 232 YKF 234 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + + G + + ++ LR KL P + T G+GY+ Sbjct: 167 LAQNPQRVFTREELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYK 224 Query: 63 F 63 F Sbjct: 225 F 225 >UniRef50_A4WZ32 Transposase and inactivated derivatives-like protein n=5 Tax=Alphaproteobacteria RepID=A4WZ32_RHOS5 Length = 229 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S +++ + +R++ G +H YLR + LR+KLE+DP+ PR E G+GY Sbjct: 162 VLASHPGKVLTHTHLLREVWGPAHTDHVEYLRVTVRSLRKKLEEDPSAPRLIQNEPGVGY 221 Query: 62 RF 63 R Sbjct: 222 RL 223 >UniRef50_A6LVN5 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=A6LVN5_CLOB8 Length = 228 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S + ++ G E N + ++ +R+K+E++P PR+ T G+GY Sbjct: 167 LLASNKGIVFSIEKIYEKIWGDVFFESDNTVMVHIRKIREKIEEEPENPRYIRTVWGVGY 226 Query: 62 R 62 R Sbjct: 227 R 227 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 86.4 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + L ++V + ++ G + S L +M LR K+ + + ++ T GIG Sbjct: 163 LYMLENKGRVVTREELLNEVWGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIG 222 Query: 61 YRF 63 Y+ Sbjct: 223 YKL 225 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L +++ + + + + LR+K+E DPA+P+ T G+GY Sbjct: 187 VFLQNPNRVLTRDRLLDLAHDRDNEPFDRSIDVRVTRLRKKIEADPAKPQAIKTVRGVGY 246 Query: 62 RFM 64 F+ Sbjct: 247 LFV 249 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ + + ++ G ++YLR YM LR KLE+DPARP ITE G+GYR Sbjct: 171 LIRHAGKVLTHRQLLGEVWGPAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGYR 230 Query: 63 F 63 Sbjct: 231 L 231 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L + + Q+ G + + + +M LR+K+E DPARP T G+GYR Sbjct: 171 LLRHPGRAFSRAELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 Query: 63 F 63 + Sbjct: 230 Y 230 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ + + G + + + + HLR+K+E +P P + T G GY+ Sbjct: 169 FMHRLNKVQSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQ 228 Query: 63 F 63 Sbjct: 229 L 229 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 +I L +I+ + + + + +G LR+K+EQDP P+ +T G G Sbjct: 178 LIFLEHPGRILNRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGG 237 Query: 61 YRF 63 Y+F Sbjct: 238 YQF 240 >UniRef50_C2H8S4 Response regulator n=8 Tax=Enterococcus RepID=C2H8S4_ENTFC Length = 244 Score = 86.0 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + Q+ R + +N + ++ HLR K+E DP ++ T GIGY Sbjct: 172 FMENPDQVFSKEQIYRSVWNDEHF-DANTIMVFINHLRNKIEADPKNAKYLKTIWGIGYT 230 Query: 63 F 63 F Sbjct: 231 F 231 >UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CI50_9FIRM Length = 224 Score = 86.0 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXG-LNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 L Q++ + + L + LR+K+E+DP PR+ +T GIGY Sbjct: 160 FLKNRGQVLTREQILENVWDSYENFVDERTLNVNVRRLREKIEKDPKNPRYIVTMFGIGY 219 Query: 62 R 62 + Sbjct: 220 K 220 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 28/64 (43%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + ++ G + + + ++ +R+KLE + T G+GY Sbjct: 167 LLIKNPERVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGY 226 Query: 62 RFML 65 +F + Sbjct: 227 KFEV 230 >UniRef50_D1PMF3 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=D1PMF3_9FIRM Length = 239 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 I+ Y + G + + N L ++ HLR+KLE+ P +PR +T GIGY+ Sbjct: 176 NRGHIITYDALCEAVWGQDYYGYENSLNVHIRHLREKLEETPGKPRWLLTVRGIGYKLA 234 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + Q+ ++ + + + ++ ++R+KL PR T GIG Sbjct: 176 LTLAEAPGQVFSKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIG 235 Query: 61 YRFM 64 Y+F+ Sbjct: 236 YKFI 239 >UniRef50_C6LD48 DNA-binding response regulator ResD n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD48_9FIRM Length = 238 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ + + G + I + + ++ +R+K++ T G+GY+ Sbjct: 173 LASSPNQVFTREQLLDHIWGYDYIGDARTIDVHIKRIREKIKDHETWS--LDTVWGVGYK 230 Query: 63 F 63 F Sbjct: 231 F 231 >UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmicutes RepID=Q0SQL4_CLOPS Length = 233 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + S +I I + G + + +++ +LR K+E++ +P+ +T G+G Sbjct: 166 LCLSSYPKKIFTRDEIIELVLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVG 225 Query: 61 YRF 63 Y+F Sbjct: 226 YKF 228 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S Q+ + Q+ G + + + ++ LR KL + A TE GIGYR Sbjct: 169 LASHPGQVFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYR 228 Query: 63 FM 64 F+ Sbjct: 229 FI 230 >UniRef50_D2Q6K7 Response regulator-like transcriptional regulatory protein n=7 Tax=Bifidobacterium RepID=D2Q6K7_9BIFI Length = 253 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + ++ ++++ G + + + ++ LR KL + T +GYR Sbjct: 171 LVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEH--VIGTVRNVGYR 228 Query: 63 F 63 F Sbjct: 229 F 229 >UniRef50_Q2S3D0 Alkaline phosphatase synthesis transcriptional regulatory proteinphoP n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3D0_SALRD Length = 253 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + V +R + G++ + + ++ LR+K+E P P + T GIGY+ Sbjct: 177 FIEHRGRTVSREQLLRDVWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYK 236 Query: 63 FM 64 F+ Sbjct: 237 FV 238 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + + + G + + ++ +LRQK+E D +P T GIGY Sbjct: 165 ALAASPGRTYSRDELVSKALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGY 224 Query: 62 RF 63 F Sbjct: 225 LF 226 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ + + +++ E +N + ++ LR+K+E++P P+ T G+G Sbjct: 167 LLLANNLGTVFSAEDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVG 226 Query: 61 YR 62 Y+ Sbjct: 227 YK 228 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 85.7 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ +RQ+ G + + Y+ LR KL DP+ P+ T G GYR Sbjct: 164 LARSPGRVFPRGTLLRQVWGEDEYIDERTVNVYVQRLRNKLGDDPSDPKLIETVRGFGYR 223 Query: 63 FM 64 + Sbjct: 224 LV 225 >UniRef50_C0D2V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D2V9_9CLOT Length = 229 Score = 85.3 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L + + N + N + + +LRQK+E DP P++ +T GIGY+ Sbjct: 166 FLHNVNHVFSKEQLYTAVWKDNCV-DDNTVMVTIRNLRQKIEDDPKSPKYLLTVYGIGYK 224 Query: 63 FML 65 F++ Sbjct: 225 FVI 227 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 85.3 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 ++ ++ G S + ++ +LR+K+EQ+P +P T G GY+F Sbjct: 175 PKKVFSRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_Q1J251 Two component transcriptional regulator PhoB n=5 Tax=Deinococci RepID=Q1J251_DEIGD Length = 229 Score = 85.3 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + ++ G + + + ++ LR L DPARPR T G GYR Sbjct: 162 LTQNAGRVYTRTELLDRVWGADFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYR 221 Query: 63 F 63 Sbjct: 222 M 222 >UniRef50_Q72TM3 Response regulator n=2 Tax=Leptospira interrogans RepID=Q72TM3_LEPIC Length = 227 Score = 85.3 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ IR + G A S LR ++ LR+K+E DP+ P +TE G+GYR Sbjct: 163 LIQHAGKVLTQEQIIRHVWGPFAKNESGSLRVHVASLRKKIELDPSSPELLLTEPGVGYR 222 Query: 63 FML 65 + Sbjct: 223 LAI 225 >UniRef50_B0NH75 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NH75_EUBSP Length = 227 Score = 85.3 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + + ++ S + YM LR+KLE+D + P++ +T G+GY Sbjct: 165 LFMDNVNRVFSKDALYEMVWDNDIVDDSTIV-VYMNRLRKKLEEDFSNPKYILTVRGLGY 223 Query: 62 RFM 64 RF+ Sbjct: 224 RFV 226 >UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM87_9GAMM Length = 236 Score = 85.3 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + L +QI+ + G N + + + M LR+K+E+DP +P T G G Sbjct: 171 LALLKHPYQILSRDQLL----GENCVPYDRSIDVRMSRLRKKIEEDPQQPELIKTVYGAG 226 Query: 61 YRF 63 Y F Sbjct: 227 YMF 229 >UniRef50_C5VNC3 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNC3_CLOBO Length = 231 Score = 85.3 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I + + + G N + + + LR KLE DP+ P++ T G GY Sbjct: 167 IFIENIGISLSRDKLLDLAWGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGY 226 >UniRef50_Q39AE7 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. 383 RepID=Q39AE7_BURS3 Length = 232 Score = 84.9 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ + + ++ G + ++YLR Y+GHLR+KLE+DP RP + +TETG+GYR Sbjct: 171 HAGRLLTHDRLLSEVWGATHGKDAHYLRVYVGHLRRKLERDPRRPAYILTETGVGYRLA 229 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 84.9 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +I + + G + S + + LR+K+E+D P++ T G GY+ Sbjct: 167 LFKRPKKIFTRDELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQ 226 Query: 63 F 63 Sbjct: 227 L 227 >UniRef50_D1CG76 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG76_THET1 Length = 243 Score = 84.9 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S ++V G A SN + Y+G +R+KL DP P++ T G GY+ Sbjct: 171 LMSSPNRVVSRDDLAMYAAGYVADTSSNQIDVYIGRIRKKLGDDPNDPKYIATIRGSGYK 230 Query: 63 F 63 F Sbjct: 231 F 231 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 84.9 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + Q+ + ++ G + + + ++ +LR KL + +T G+GY Sbjct: 166 LLAAHPGQVFSREKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGY 222 Query: 62 RFM 64 RF Sbjct: 223 RFA 225 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 84.9 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + + ++ GL++ + ++ LR+++E +P+ +H IT G+GY+ Sbjct: 168 LMRNRDIVFSKEELYSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYK 227 Query: 63 FM 64 F+ Sbjct: 228 FV 229 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 84.9 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +++ + + + G ++ + YLR Y+G LRQ+LE +PA P +TE GIGYR Sbjct: 166 LARHPGRVLTHRQILGAVWGPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYR 225 Query: 63 FM 64 Sbjct: 226 MA 227 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++V +R++ G E ++YLR +G LRQKL D A P + +TE G+G Sbjct: 205 LLFKHAGRVVTQPQLLREVWGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGL 264 Query: 62 RFM 64 RF+ Sbjct: 265 RFI 267 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S ++ ++ A E +N + ++ LR+K+E D + T G+GY Sbjct: 194 LLASNPGRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGY 253 Query: 62 R 62 + Sbjct: 254 K 254 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +++ + Q G A + +G LR+K+E DP P+ + G GY Sbjct: 180 AFARHPGRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGY 239 Query: 62 RFM 64 + Sbjct: 240 ILV 242 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + ++ + ++ G++ + ++ LR+K+ T G+GY Sbjct: 162 LMIENPGKVFNRQEILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGY 216 Query: 62 RFML 65 + ++ Sbjct: 217 KLVI 220 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +++ I G + + + N++ +LR+K+ DPA PR+ G+GY Sbjct: 162 VFIRARGRVLSRDQLIAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGY 221 Query: 62 RF 63 RF Sbjct: 222 RF 223 >UniRef50_B5EL18 Two component transcriptional regulator, winged helix family n=3 Tax=Acidithiobacillus RepID=B5EL18_ACIF5 Length = 247 Score = 84.9 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 39/62 (62%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +I+ Y + + G ++ + ++Y+R Y+ LR+K+E DP P++ +TE G+GY Sbjct: 179 LFVMNQGRILSYRRILGAVWGEHSSDQAHYVRLYIKRLREKIEDDPGMPQYLVTEKGVGY 238 Query: 62 RF 63 RF Sbjct: 239 RF 240 >UniRef50_A1SYE4 Two component transcriptional regulator, winged helix family protein n=4 Tax=Proteobacteria RepID=A1SYE4_PSYIN Length = 246 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 + +++ + + G + + LRQKLE + PR+ TE GIGY Sbjct: 177 LATRPKRVISREQLLEYLRGAEGDTFDRTVDVLISRLRQKLEINSRSPRYIRTERGIGYS 236 Query: 63 F 63 F Sbjct: 237 F 237 >UniRef50_C0D765 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D765_9CLOT Length = 260 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 LS +I+ R + + + N + ++ LR K+E P P + G+GY+ Sbjct: 188 FLSNQNKILTKDQIYRYVWNDDFV-DDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGYQ 246 Query: 63 FM 64 F+ Sbjct: 247 FV 248 >UniRef50_B3E0R0 DNA-binding response regulator KdpE (REC-wHTH domains) n=8 Tax=Bacteria RepID=B3E0R0_METI4 Length = 240 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +++ + ++++ G ++ +YLR YM LR+K+E++ +P+ +TE GIGY Sbjct: 168 LLVRHAGKVLTHRQILQEVWGPRGVDQVHYLRVYMARLREKIEENSLQPKLLLTEPGIGY 227 Query: 62 RFML 65 R M+ Sbjct: 228 RLMI 231 >UniRef50_C0X3L2 Response regulator n=22 Tax=Enterococcus faecalis RepID=C0X3L2_ENTFA Length = 240 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 L Q+ + G +N + ++ LR KLE++P P + T GIGY Sbjct: 172 FLENPEQVFSKEQIYSSVWGTG-DVDANTIMVFINRLRSKLEENPKEPCYLRTVWGIGYT 230 Query: 63 F 63 F Sbjct: 231 F 231 >UniRef50_Q3Z7C3 Transcriptional regulator, putative n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z7C3_DEHE1 Length = 238 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S ++ + + G + + + ++ LR K+ ++ T G+GY Sbjct: 172 LASNRGRVYTRESLLETIWGFDYYGGTRTVDVHIRRLRSKIGD--FNEKYIKTVRGVGYT 229 Query: 63 F 63 F Sbjct: 230 F 230 >UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bacteria RepID=MTRA_MYCBO Length = 225 Score = 84.5 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + Q+ + Q+ G + + ++ LR K+E+DP P +T G+G Sbjct: 160 VALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVG 219 Query: 61 YR 62 Y+ Sbjct: 220 YK 221 >UniRef50_C7NFF7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=11 Tax=Actinomycetales RepID=C7NFF7_KYTSD Length = 244 Score = 84.5 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 I + ++V +R+ + + + L ++ LR+KL D + PR T G+G+ Sbjct: 179 ILVRDMGRVVSREQLMREAWQTDWVGSTKTLDMHVSGLRKKLGDDHSDPRFIATVRGVGF 238 Query: 62 RFM 64 R + Sbjct: 239 RLV 241 >UniRef50_B8GBC5 Two component transcriptional regulator, winged helix family n=4 Tax=Chloroflexi (class) RepID=B8GBC5_CHLAD Length = 227 Score = 84.5 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 M+ +V + +R + G ++YL+ Y+ HLR+K+E DP +P+ +TE G+G Sbjct: 163 MVLAEQAGAVVTHEQLLRAVWGNEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVG 222 Query: 61 YRF 63 YR Sbjct: 223 YRL 225 >UniRef50_Q2W608 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W608_MAGSA Length = 228 Score = 84.5 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 ++ + ++ + G ++ + YLR Y+ LRQKLE DPARPR +T+ G+GYR Sbjct: 162 FARHPDHVLTHKHILKGVWGPAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYR 221 Query: 63 F 63 Sbjct: 222 L 222 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 84.5 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + + +++ + LN + +G +R+K+ DP P++ I+ G GY Sbjct: 161 MLIKNKGRVLTRDYILDNSIYLNYDSIDRTVDVIIGRIRKKIGDDPKNPKYIISVRGFGY 220 Query: 62 RF 63 +F Sbjct: 221 KF 222 >UniRef50_C7M2G6 Putative two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2G6_ACIFD Length = 217 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 S ++ + ++ G + + ++ LR KL + A T +GYR Sbjct: 156 LASHPGKVFSRETLLSRVWGYEYYGGARTVDVHVRRLRAKLGE--AHEHLIHTVRSVGYR 213 Query: 63 F 63 F Sbjct: 214 F 214 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +S Q++ + ++ G + + SN + Y+ +LR KLE + + R T G+GY Sbjct: 164 LMSHPKQVLSRDQILERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYV 222 Query: 63 F 63 Sbjct: 223 L 223 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAI-EHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 I ++ ++++ + + + ++ +LR+KLE + +P++ +T G+G Sbjct: 164 IMAKHPGRVFSRADLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMG 223 Query: 61 YRF 63 Y+F Sbjct: 224 YKF 226 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 +S + + + G + + LR+ +E+DPA PR+ T G+GY Sbjct: 171 ALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGY 230 Query: 62 RFM 64 F+ Sbjct: 231 VFV 233 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 2 IALSVCWQIVRYLCRIRQMX-GLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + +I + N + ++ LR K+E DP +P++ T G G Sbjct: 175 LMMQHPGKIFSTQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKG 234 Query: 61 YRF 63 YRF Sbjct: 235 YRF 237 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSN-YLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + S ++V ++ G +SN + ++ HLR+K+ P++ T G+G Sbjct: 168 VLCSNRGRVVSSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVG 227 Query: 61 YR 62 Y+ Sbjct: 228 YK 229 >UniRef50_Q2J7U7 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=Q2J7U7_FRASC Length = 272 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + ++V + I Q+ G + S+ LR Y+ LR+KLE DP RPR+ TE G+GY Sbjct: 209 ALVRHPGKLVSHQQLISQVWGPGVADDSSSLRLYINKLRRKLEPDPTRPRYLTTEPGLGY 268 Query: 62 RF 63 R+ Sbjct: 269 RY 270 >UniRef50_B1JFX2 Two component transcriptional regulator, winged helix family n=30 Tax=Bacteria RepID=B1JFX2_YERPY Length = 235 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 3 ALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYR 62 +++ + G + + S L ++ LR+ +E DP P T G GYR Sbjct: 166 LYQHKGRVITRDMLFDAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 Query: 63 F 63 + Sbjct: 226 Y 226 >UniRef50_Q893J9 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893J9_CLOTE Length = 159 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 1 MIALSVCWQIVRYLCRIRQ-MXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGI 59 +I ++ +++ + + + G + +N L Y+ +R K+E+D + P + T+ GI Sbjct: 89 LIFMTNAKKVMSREEILNKLIEGEGSYFDTNTLSVYIKRIRDKIEEDSSNPEYIKTKRGI 148 Query: 60 GY 61 GY Sbjct: 149 GY 150 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 84.1 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 + + ++ + + S + ++ ++R KL+ P++ T G+G Sbjct: 161 LFLANHPGRVFTKEELYAAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVG 219 Query: 61 YRFM 64 Y+F+ Sbjct: 220 YKFI 223 >UniRef50_UPI00016988BE Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016988BE Length = 175 Score = 83.7 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + L +++ + G + + LR+K+E +P+ P + T G GY Sbjct: 109 VFLEHSGRVLSRDMLMEITKGYERSHLDRSIDVCVNRLRRKIEPNPSEPIYLRTVWGAGY 168 Query: 62 RF 63 F Sbjct: 169 LF 170 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 83.7 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 L +++ + + G A + N + LR+K+E D P T G GY Sbjct: 175 AFLDHPKKVLDRDRLLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGY 234 Query: 62 RFM 64 RF Sbjct: 235 RFA 237 >UniRef50_C6NV64 Two component transcriptional regulator, winged helix family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NV64_9GAMM Length = 247 Score = 83.7 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ + + ++ + G + + + LR+ +E++P +PR TE G+G Sbjct: 161 LVFAQRPNRALSRDHLLQALGGDDDGRFDRSIDVRVTRLRKLIEENPRQPRFLRTERGVG 220 Query: 61 YRFM 64 YRF+ Sbjct: 221 YRFV 224 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 83.7 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 8 WQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 +++ ++ G + N++ LR KLE++ PRH +T G+GYRF+ Sbjct: 184 GRVLSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_A5ZNL8 Putative uncharacterized protein n=3 Tax=Ruminococcus RepID=A5ZNL8_9FIRM Length = 137 Score = 83.7 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 ++ +I + N + ++ ++R+K+E DP +P + T G+G Sbjct: 68 LLLAKSPGRIFGKEMVYDLVWNEPYSGDYNVVMRHICNIREKIEDDPGQPLYIQTVRGVG 127 Query: 61 YRF 63 YRF Sbjct: 128 YRF 130 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 83.7 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + S +++ + G+ + + +R K+ DP PR T GY Sbjct: 199 LLASSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGY 258 Query: 62 RFM 64 F+ Sbjct: 259 LFV 261 >UniRef50_A8SR47 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SR47_9FIRM Length = 239 Score = 83.7 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 6 VCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRF 63 +++ + + GL + + + ++ LR+KLE DP+ P+ T G GY Sbjct: 178 NRGRVLTKEQIMSAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 83.3 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 1 MIALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIG 60 +I + ++ + Q+ G + + ++ LRQK+ Q T G+G Sbjct: 168 LILARNAGRTLKREQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVG 227 Query: 61 YRFML 65 Y+ + Sbjct: 228 YKLEV 232 >UniRef50_C7QI13 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=C7QI13_CATAD Length = 241 Score = 83.3 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 7 CWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGYRFM 64 ++ +R G + + ++ +LR+K+E +PARP +T G+GY+ + Sbjct: 181 PGRVFTRAQLLRHTRGFDRASTERAVDVHVLNLRKKIEANPARPTRLLTVYGVGYKLV 238 >UniRef50_Q3ZVS3 DNA-binding response regulator n=4 Tax=Dehalococcoides RepID=Q3ZVS3_DEHSC Length = 230 Score = 83.3 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 2 IALSVCWQIVRYLCRIRQMXGLNAIEHSNYLRNYMGHLRQKLEQDPARPRHFITETGIGY 61 + Q++ Y + ++ G N L+ ++ +LR K+E +P P+ +TE G+GY Sbjct: 165 LLARNSGQVLTYRMLLEKVWGTEYSGDLNLLKKHIHNLRAKIEVNPEYPKIIVTERGLGY 224 Query: 62 RFM 64 + Sbjct: 225 SLI 227 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.205 0.729 Lambda K H 0.267 0.0628 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 578,292,806 Number of Sequences: 3077464 Number of extensions: 26611820 Number of successful extensions: 84256 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2567 Number of HSP's successfully gapped in prelim test: 983 Number of HSP's that attempted gapping in prelim test: 79633 Number of HSP's gapped (non-prelim): 3601 length of query: 65 length of database: 1,040,396,356 effective HSP length: 37 effective length of query: 28 effective length of database: 926,530,188 effective search space: 25942845264 effective search space used: 25942845264 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.5 bits) S2: 89 (38.3 bits)