Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9A6
DateThu Jan 5 11:09:46 GMT 2012
Unique Job ID55dd815aa6bfe27d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2vawA_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz pseudomonas aeruginosa gdp
Confidence and coverage
Confidence:100.0% Coverage: 82%
314 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI
Secondary structure 
SS confidence 
Disorder  ?????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVA
Secondary structure 
SS confidence 
Disorder 
?
??
?
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND
Secondary structure 
SS confidence 
Disorder 
??????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380...
Sequence  NAPQTAKEPDYLDIPAFLRKQAD
Secondary structure 
SS confidence 
Disorder  ???????????
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2vaw chain A

3D model

Region: 2 - 315
Aligned: 314
Modelled: 314
Confidence: 100.0%
Identity: 67%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz pseudomonas aeruginosa gdp

Phyre2

PDB 1w59 chain B

3D model

Region: 3 - 338
Aligned: 334
Modelled: 336
Confidence: 100.0%
Identity: 44%
PDB header:cell division
Chain: B: PDB Molecule:cell division protein ftsz homolog 1;
PDBTitle: ftsz dimer, empty (m. jannaschii)

Phyre2

PDB 2r6r chain 1

3D model

Region: 12 - 331
Aligned: 320
Modelled: 320
Confidence: 100.0%
Identity: 46%
PDB header:cell cycle
Chain: 1: PDB Molecule:cell division protein ftsz;
PDBTitle: aquifex aeolicus ftsz

Phyre2

PDB 1w5f chain A

3D model

Region: 12 - 320
Aligned: 308
Modelled: 309
Confidence: 100.0%
Identity: 47%
PDB header:cell division
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima)

Phyre2

PDB 1ofu chain B

3D model

Region: 11 - 316
Aligned: 306
Modelled: 306
Confidence: 100.0%
Identity: 68%
PDB header:bacterial cell division inhibitor
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa

Phyre2

PDB 2vxy chain A

3D model

Region: 11 - 315
Aligned: 304
Modelled: 305
Confidence: 100.0%
Identity: 54%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution

Phyre2

PDB 2rho chain B

3D model

Region: 11 - 315
Aligned: 302
Modelled: 305
Confidence: 100.0%
Identity: 54%
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s

Phyre2

PDB 2q1y chain B

3D model

Region: 8 - 315
Aligned: 293
Modelled: 308
Confidence: 100.0%
Identity: 54%
PDB header:cell cycle, signaling protein
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s

Phyre2

PDB 2vap chain A domain 1

3D model

Region: 2 - 205
Aligned: 203
Modelled: 204
Confidence: 100.0%
Identity: 48%
Fold: Tubulin nucleotide-binding domain-like
Superfamily: Tubulin nucleotide-binding domain-like
Family: Tubulin, GTPase domain

Phyre2

PDB 3m8k chain A

3D model

Region: 2 - 340
Aligned: 336
Modelled: 336
Confidence: 100.0%
Identity: 15%
PDB header:structural protein
Chain: A: PDB Molecule:ftsz/tubulin-related protein;
PDBTitle: protein structure of type iii plasmid segregation tubz

Phyre2

PDB 1ofu chain A domain 1

3D model

Region: 11 - 207
Aligned: 197
Modelled: 197
Confidence: 100.0%
Identity: 68%
Fold: Tubulin nucleotide-binding domain-like
Superfamily: Tubulin nucleotide-binding domain-like
Family: Tubulin, GTPase domain

Phyre2

PDB 1rq2 chain A domain 1

3D model

Region: 11 - 207
Aligned: 192
Modelled: 197
Confidence: 100.0%
Identity: 56%
Fold: Tubulin nucleotide-binding domain-like
Superfamily: Tubulin nucleotide-binding domain-like
Family: Tubulin, GTPase domain

Phyre2

PDB 1w5f chain A domain 1

3D model

Region: 12 - 204
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 54%
Fold: Tubulin nucleotide-binding domain-like
Superfamily: Tubulin nucleotide-binding domain-like
Family: Tubulin, GTPase domain

Phyre2

PDB 2vap chain A domain 2

3D model

Region: 206 - 329
Aligned: 123
Modelled: 124
Confidence: 100.0%
Identity: 40%
Fold: Bacillus chorismate mutase-like
Superfamily: Tubulin C-terminal domain-like
Family: Tubulin, C-terminal domain

Phyre2

PDB 1w5f chain A domain 2

3D model

Region: 206 - 319
Aligned: 113
Modelled: 114
Confidence: 100.0%
Identity: 35%
Fold: Bacillus chorismate mutase-like
Superfamily: Tubulin C-terminal domain-like
Family: Tubulin, C-terminal domain

Phyre2

PDB 1ofu chain A domain 2

3D model

Region: 208 - 316
Aligned: 109
Modelled: 109
Confidence: 100.0%
Identity: 69%
Fold: Bacillus chorismate mutase-like
Superfamily: Tubulin C-terminal domain-like
Family: Tubulin, C-terminal domain

Phyre2

PDB 1rq2 chain A domain 2

3D model

Region: 208 - 315
Aligned: 107
Modelled: 108
Confidence: 100.0%
Identity: 47%
Fold: Bacillus chorismate mutase-like
Superfamily: Tubulin C-terminal domain-like
Family: Tubulin, C-terminal domain

Phyre2

PDB 3edl chain A

3D model

Region: 13 - 217
Aligned: 205
Modelled: 205
Confidence: 99.7%
Identity: 18%
PDB header:structural protein
Chain: A: PDB Molecule:alpha-tubulin;
PDBTitle: kinesin13-microtubule ring complex

Phyre2

PDB 1z5w chain A

3D model

Region: 10 - 285
Aligned: 274
Modelled: 276
Confidence: 99.7%
Identity: 13%
PDB header:structural protein
Chain: A: PDB Molecule:tubulin gamma-1 chain;
PDBTitle: crystal structure of gamma-tubulin bound to gtp

Phyre2

PDB 2btq chain B

3D model

Region: 13 - 217
Aligned: 196
Modelled: 205
Confidence: 99.6%
Identity: 19%
PDB header:structural protein
Chain: B: PDB Molecule:tubulin btubb;
PDBTitle: structure of btubab heterodimer from prosthecobacter2 dejongeii

Phyre2
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c2vawA_
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c1w59B_
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c2r6r1_
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c1w5fA_
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c1ofuB_
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c2vxyA_
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c2rhoB_
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c2q1yB_
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d2vapa1
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c3m8kA_
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d1ofua1
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d1rq2a1
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d1w5fa1
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d2vapa2
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d1w5fa2
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d1ofua2
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d1rq2a2
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c3edlA_
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c1z5wA_
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c2btqB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vawA_
100.0 67 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz pseudomonas aeruginosa gdp
2c1w59B_
100.0 44 PDB header:cell division
Chain: B: PDB Molecule:cell division protein ftsz homolog 1;
PDBTitle: ftsz dimer, empty (m. jannaschii)
3c2r6r1_
100.0 46 PDB header:cell cycle
Chain: 1: PDB Molecule:cell division protein ftsz;
PDBTitle: aquifex aeolicus ftsz
4c1w5fA_
100.0 47 PDB header:cell division
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima)
5c1ofuB_
100.0 68 PDB header:bacterial cell division inhibitor
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa
6c2vxyA_
100.0 54 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution
7c2rhoB_
100.0 54 PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s
8c2q1yB_
100.0 54 PDB header:cell cycle, signaling protein
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s
9d2vapa1
100.0 48 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
10c3m8kA_
100.0 15 PDB header:structural protein
Chain: A: PDB Molecule:ftsz/tubulin-related protein;
PDBTitle: protein structure of type iii plasmid segregation tubz
11d1ofua1
100.0 68 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
12d1rq2a1
100.0 56 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
13d1w5fa1
100.0 54 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
14d2vapa2
100.0 40 Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
15d1w5fa2
100.0 35 Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
16d1ofua2
100.0 69 Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
17d1rq2a2
100.0 47 Fold:Bacillus chorismate mutase-like
Superfamily:Tubulin C-terminal domain-like
Family:Tubulin, C-terminal domain
18c3edlA_
99.7 18 PDB header:structural protein
Chain: A: PDB Molecule:alpha-tubulin;
PDBTitle: kinesin13-microtubule ring complex
19c1z5wA_
99.7 13 PDB header:structural protein
Chain: A: PDB Molecule:tubulin gamma-1 chain;
PDBTitle: crystal structure of gamma-tubulin bound to gtp
20c2btqB_
99.6 19 PDB header:structural protein
Chain: B: PDB Molecule:tubulin btubb;
PDBTitle: structure of btubab heterodimer from prosthecobacter2 dejongeii
21c2p4nB_
not modelled 99.6 20 PDB header:transport protein
Chain: B: PDB Molecule:tubulin beta chain;
PDBTitle: human monomeric kinesin (1bg2) and bovine tubulin (1jff)2 docked into the 9-angstrom cryo-em map of nucleotide-free3 kinesin complexed to the microtubule
22c2btoA_
not modelled 99.6 19 PDB header:cytoskeletal protein
Chain: A: PDB Molecule:tubulin btuba;
PDBTitle: structure of btuba from prosthecobacter dejongeii
23d1tubb1
not modelled 99.6 20 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
24d1tuba1
not modelled 99.5 15 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
25d2btoa1
not modelled 99.5 19 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
26c1ez4B_
not modelled 97.1 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution
27d1i10a1
not modelled 97.1 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
28c1ldbA_
not modelled 97.1 25 PDB header:oxidoreductase(choh(d)-nad(a))
Chain: A: PDB Molecule:apo-l-lactate dehydrogenase;
PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase
29d1ldna1
not modelled 97.0 27 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
30c2v65A_
not modelled 97.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase a chain;
PDBTitle: apo ldh from the psychrophile c. gunnari
31d1llda1
not modelled 97.0 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
32c3d0oA_
not modelled 97.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase 1;
PDBTitle: crystal structure of lactate dehydrogenase from2 staphylococcus aureus
33c1lldA_
not modelled 96.9 24 PDB header:oxidoreductase(choh (d)-nad (a))
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: molecular basis of allosteric activation of bacterial l-lactate2 dehydrogenase
34d1i0za1
not modelled 96.8 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
35d1ldma1
not modelled 96.8 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
36c3pqeD_
not modelled 96.7 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation
37d1u8xx1
not modelled 96.7 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
38c3prjB_
not modelled 96.6 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
39c1pzfD_
not modelled 96.6 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:lactate dehydrogenase;
PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate
40c2ldxA_
not modelled 96.6 23 PDB header:oxidoreductase(choh(d)-nad(a))
Chain: A: PDB Molecule:apo-lactate dehydrogenase;
PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4
41d9ldta1
not modelled 96.5 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
42c1a5zA_
not modelled 96.5 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh)
43c1ojuA_
not modelled 96.5 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: 2.8 a resolution structure of malate dehydrogenase from2 archaeoglobus fulgidus in complex with etheno-nad.
44c2e37B_
not modelled 96.4 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: structure of tt0471 protein from thermus thermophilus
45c1hyhA_
not modelled 96.4 24 PDB header:oxidoreductase (choh(d)-nad+(a))
Chain: A: PDB Molecule:l-2-hydroxyisocaproate dehydrogenase;
PDBTitle: crystal structure of l-2-hydroxyisocaproate dehydrogenase from2 lactobacillus confusus at 2.2 angstroms resolution-an example of3 strong asymmetry between subunits
46d1pzga1
not modelled 96.4 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
47c1y6jA_
not modelled 96.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: l-lactate dehydrogenase from clostridium thermocellum cth-1135
48c1u4sA_
not modelled 96.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: plasmodium falciparum lactate dehydrogenase complexed with 2,6-2 naphthalenedisulphonic acid
49d2ldxa1
not modelled 96.2 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
50d1up7a1
not modelled 96.2 28 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
51c8ldhA_
not modelled 96.2 22 PDB header:oxidoreductase(choh(d)-nad(a))
Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase;
PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase
52c3fefB_
not modelled 96.1 31 PDB header:hydrolase
Chain: B: PDB Molecule:putative glucosidase lpld;
PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis
53c3dl2A_
not modelled 96.1 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2 variant 3;
PDBTitle: hexagonal structure of the ldh domain of human ubiquitin-2 conjugating enzyme e2-like isoform a
54c3p7mC_
not modelled 95.9 23 PDB header:oxidoreductase
Chain: C: PDB Molecule:malate dehydrogenase;
PDBTitle: structure of putative lactate dehydrogenase from francisella2 tularensis subsp. tularensis schu s4
55d1ojua1
not modelled 95.9 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
56c1hygA_
not modelled 95.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate/malate dehydrogenase;
PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase
57c2hjrK_
not modelled 95.8 23 PDB header:oxidoreductase
Chain: K: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase
58d1a5za1
not modelled 95.8 32 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
59d2cmda1
not modelled 95.8 31 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
60d1y6ja1
not modelled 95.7 25 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
61c1obbB_
not modelled 95.7 23 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase a, agla, from thermotoga maritima in2 complex with maltose and nad+
62c2v6bB_
not modelled 95.7 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form)
63c2dfdD_
not modelled 95.6 26 PDB header:oxidoreductase
Chain: D: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of human malate dehydrogenase type 2
64c3gucB_
not modelled 95.6 18 PDB header:transferase
Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme 5;
PDBTitle: human ubiquitin-activating enzyme 5 in complex with amppnp
65c3h9gA_
not modelled 95.6 13 PDB header:transferase/antibiotic
Chain: A: PDB Molecule:mccb protein;
PDBTitle: crystal structure of e. coli mccb + mcca-n7isoasn
66d1obba1
not modelled 95.6 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
67c3gviB_
not modelled 95.5 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of lactate/malate dehydrogenase from2 brucella melitensis in complex with adp
68d1s6ya1
not modelled 95.5 30 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
69c2pwzG_
not modelled 95.4 32 PDB header:oxidoreductase
Chain: G: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase
70c1u8xX_
not modelled 95.4 21 PDB header:hydrolase
Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase;
PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase
71c3nepX_
not modelled 95.3 24 PDB header:oxidoreductase
Chain: X: PDB Molecule:malate dehydrogenase;
PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber
72d5ldha1
not modelled 95.2 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
73d1hyha1
not modelled 95.2 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
74d1gv0a1
not modelled 95.1 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
75c1smkD_
not modelled 95.1 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:malate dehydrogenase, glyoxysomal;
PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures
76c1sevA_
not modelled 95.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase, glyoxysomal precursor;
PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures
77c1up6F_
not modelled 95.1 31 PDB header:hydrolase
Chain: F: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate
78d7mdha1
not modelled 95.0 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
79c3ic5A_
not modelled 94.9 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
80c1gv1D_
not modelled 94.9 23 PDB header:oxidoreductase
Chain: D: PDB Molecule:malate dehydrogenase;
PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases
81d1y7ta1
not modelled 94.8 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
82c1s6yA_
not modelled 94.8 36 PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase
83d1guza1
not modelled 94.8 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
84c2fnzA_
not modelled 94.8 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of the lactate dehydrogenase from cryptosporidium2 parvum complexed with cofactor (b-nicotinamide adenine dinucleotide)3 and inhibitor (oxamic acid)
85c1ur5C_
not modelled 94.7 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:malate dehydrogenase;
PDBTitle: stabilization of a tetrameric malate dehydrogenase by2 introduction of a disulfide bridge at the dimer/dimer3 interface
86c1mldA_
not modelled 94.7 25 PDB header:oxidoreductase(nad(a)-choh(d))
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases
87c1llcA_
not modelled 94.6 23 PDB header:oxidoreductase(choh(d)-nad(a))
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution
88d1jw9b_
not modelled 94.5 17 Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Molybdenum cofactor biosynthesis protein MoeB
89d1uxja1
not modelled 94.3 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
90c3triB_
not modelled 94.3 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: structure of a pyrroline-5-carboxylate reductase (proc) from coxiella2 burnetii
91d1o6za1
not modelled 94.2 28 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
92c1b8vA_
not modelled 94.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (malate dehydrogenase);
PDBTitle: malate dehydrogenase from aquaspirillum arcticum
93d1p3da1
not modelled 94.2 29 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
94c3tl2A_
not modelled 93.9 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of bacillus anthracis str. ames malate dehydrogenase2 in closed conformation.
95c5mdhB_
not modelled 93.9 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of ternary complex of porcine cytoplasmic malate2 dehydrogenase alpha-ketomalonate and tnad at 2.4 angstroms resolution
96c2nvuB_
not modelled 93.8 19 PDB header:protein turnover, ligase
Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme
PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex
97d1ez4a1
not modelled 93.7 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
98d1llca1
not modelled 93.6 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
99c1y8qA_
not modelled 93.6 19 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-like 1 activating enzyme e1a;
PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
100d1t2da1
not modelled 93.5 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
101d1tk9a_
not modelled 93.4 20 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
102c2axqA_
not modelled 93.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
103c3kydB_
not modelled 93.2 18 PDB header:ligase
Chain: B: PDB Molecule:sumo-activating enzyme subunit 2;
PDBTitle: human sumo e1~sumo1-amp tetrahedral intermediate mimic
104c1wziA_
not modelled 93.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus
105d5mdha1
not modelled 93.2 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
106c2x3yA_
not modelled 93.1 20 PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei
107c1txgA_
not modelled 93.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus
108c1y8qD_
not modelled 92.7 16 PDB header:ligase
Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b;
PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex
109d1j6ua1
not modelled 92.6 16 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
110d2jfga1
not modelled 92.6 24 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
111c2q3eH_
not modelled 92.6 19 PDB header:oxidoreductase
Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose
112c1e5lA_
not modelled 92.5 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
113c7mdhA_
not modelled 92.2 23 PDB header:chloroplastic malate dehydrogenase
Chain: A: PDB Molecule:protein (malate dehydrogenase);
PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form
114c2yvaB_
not modelled 92.0 25 PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
115d1pjqa1
not modelled 92.0 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
116d1e5qa1
not modelled 91.9 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
117d2hjsa1
not modelled 91.3 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
118c1zfnA_
not modelled 91.2 21 PDB header:transferase
Chain: A: PDB Molecule:adenylyltransferase thif;
PDBTitle: structural analysis of escherichia coli thif
119d1b8pa1
not modelled 90.5 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
120d1txga2
not modelled 90.3 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0