Phyre 2 alignment of P13979 with c2dnrA_

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Job Description | P13979
Confidence | 3.85% | Date | Thu Jan 5 11:33:52 GMT 2012
Rank | 59 | Aligned Residues | 35
% Identity | 26% | Template | c2dnrA_
PDB info | PDB header:rna binding protein | Chain: A: PDB Molecule:synaptojanin-1; | PDBTitle: solution structure of rna binding domain in synaptojanin 1
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |  |  |  |  | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | S | E | R | T | V | F | L | Q | I | K | N | T | S | D | . | . | . | . | K | D | M | S | G | L | Q | G | K | I | A | D | A | V | K | A | K | G | Y | Q | V | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
Template Sequence |  | S | S | G | G | T | V | L | V | S | I | K | S | S | L | P | E | N | N | F | F | D | D | A | . | L | I | D | E | L | L | Q | Q | F | A | S | F | G | . | E | V | I
Template Known Secondary structure |  |  | S | S |  |  |  |  |  |  |  |  |  | S | S | T | T | T |  | S |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | T | T |  | . |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 890 | . | . | . | . | . | . | . | . | . | 900 | . | . | . | . | . | . | . | . | . | 910 | . | . |  | . | . | . | . | . | . | . | 920 | . | . | . | . | . |  | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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