Phyre 2 alignment of P13979 with c2lllA_

Return to main results | Retrieve Phyre Job Id

Job Description | P13979
Confidence | 9.42% | Date | Thu Jan 5 11:33:52 GMT 2012
Rank | 25 | Aligned Residues | 39
% Identity | 38% | Template | c2lllA_
PDB info | PDB header:structural protein | Chain: A: PDB Molecule:lamin-b2; | PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |  |  |  | . | . | . | . | 90 | . | . | . | . | . | . | . |  | . | . | 100 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Query Sequence |  | F | L | Q | I | K | N | T | S | D | K | D | M | S | G | L | Q | G | K | I | A | D | A | V | K | A | K | G | Y | Q | V | V | . | . | . | T | S | P | D | K | A | Y | Y | W | I | Q | A | . | N | V | L | K | A | D | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | V | Q | L | K | N | N | S | D | K | D | Q | S | . | L | G | . | . | . | . | . | . | . | . | . | . | N | W | R | I | K | R | Q | V | L | E | G | E | E | I | A | Y | K | F | T | P | K | Y | I | L | R | A | G | Q
Template Known Secondary structure |  |  |  |  |  |  |  |  | S | S | S |  |  |  | . |  | S | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  | T | T |  |  |  |  | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 465 | . | . | . | . | 470 | . | . | . | . | . | . | . |  | . | . |  |  |  |  |  |  |  |  |  |  | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions