Phyre 2 Results for P13979

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Email | l.a.kelley@imperial.ac.uk
Description | P13979
Date | Thu Jan 5 11:33:52 GMT 2012
Unique Job ID | 552c5a64ad17fc76

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3bf2A_
Top template information
PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of the a1ksw9_neimf protein from2 neisseria meningitidis. northeast structural genomics3 consortium target mr36a
Confidence and coverage
Confidence: | 81.1% | Coverage: | 16%
39 residues ( 16% of your sequence) have been modelled with 81.1% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | M | K | T | K | K | L | M | M | V | A | L | V | S | S | T | L | A | L | S | G | C | G | A | M | S | T | A | I | K | K | R | N | L | E | V | K | T | Q | M | S | E | T | I | W | L | E | P | A | S | E | R | T | V | F | L | Q | I | K | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | S | D | K | D | M | S | G | L | Q | G | K | I | A | D | A | V | K | A | K | G | Y | Q | V | V | T | S | P | D | K | A | Y | Y | W | I | Q | A | N | V | L | K | A | D | K | M | D | L | R | E | S | Q | G | W | L | N | R | G | Y | E | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | A | V | G | A | A | L | G | A | G | I | T | G | Y | N | S | N | S | A | G | A | T | L | G | V | G | L | A | A | G | L | V | G | M | A | A | D | A | M | V | E | D | V | N | Y | T | M | I | T | D | V | Q | I | A | E | R | T | K | A | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? | ? |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | V | T | T | D | N | V | A | A | L | R | Q | G | T | S | G | A | K | I | Q | T | S | T | E | T | G | N | Q | H | K | Y | Q | T | R | V | V | S | N | A | N | K | V | N | L | K | F | E | E | A | K | P | V | L | E | D | Q | L | A | K | S | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | .
Sequence |  | A | N | I | L
Secondary structure |  |  |  |  |
SS confidence |  |  |  |  |
Disorder |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3bf2A_ |

### PDB 3bf2 chain A

Region: 52 - 98
Aligned: 39
Modelled: 47
Confidence: 81.1%
Identity: 15%
PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of the a1ksw9_neimf protein from2 neisseria meningitidis. northeast structural genomics3 consortium target mr36a

Phyre2
2 |
| c2jxpA_ |

### PDB 2jxp chain A

Region: 48 - 104
Aligned: 52
Modelled: 57
Confidence: 63.2%
Identity: 13%
PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein b;
PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a

Phyre2
3 |
| d2okfa1 |

### PDB 2okf chain A domain 1

Region: 69 - 88
Aligned: 20
Modelled: 20
Confidence: 48.0%
Identity: 25%
Fold: Restriction endonuclease-like
Superfamily: Restriction endonuclease-like
Family: XisH-like

Phyre2
4 |
| d2inba1 |

### PDB 2inb chain A domain 1

Region: 69 - 88
Aligned: 20
Modelled: 20
Confidence: 47.3%
Identity: 20%
Fold: Restriction endonuclease-like
Superfamily: Restriction endonuclease-like
Family: XisH-like

Phyre2
5 |
| d1j1ta_ |

### PDB 1j1t chain A

Region: 54 - 65
Aligned: 12
Modelled: 12
Confidence: 34.3%
Identity: 33%
Fold: Concanavalin A-like lectins/glucanases
Superfamily: Concanavalin A-like lectins/glucanases
Family: Alginate lyase

Phyre2
6 |
| d1a9xa2 |

### PDB 1a9x chain A domain 2

Region: 49 - 93
Aligned: 41
Modelled: 45
Confidence: 31.7%
Identity: 15%
Fold: Methylglyoxal synthase-like
Superfamily: Methylglyoxal synthase-like
Family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain

Phyre2
7 |
| d1nn4a_ |

### PDB 1nn4 chain A

Region: 62 - 93
Aligned: 32
Modelled: 32
Confidence: 29.2%
Identity: 25%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
8 |
| c3he8A_ |

### PDB 3he8 chain A

Region: 62 - 86
Aligned: 25
Modelled: 25
Confidence: 28.9%
Identity: 40%
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b

Phyre2
9 |
| d2ayxa2 |

### PDB 2ayx chain A domain 2

Region: 46 - 88
Aligned: 37
Modelled: 43
Confidence: 26.2%
Identity: 27%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: RcsC linker domain-like

Phyre2
10 |
| d1o1xa_ |

### PDB 1o1x chain A

Region: 62 - 86
Aligned: 25
Modelled: 25
Confidence: 23.2%
Identity: 28%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
11 |
| c3s5pA_ |

### PDB 3s5p chain A

Region: 49 - 86
Aligned: 34
Modelled: 38
Confidence: 22.6%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia

Phyre2
12 |
| c1ciiA_ |

### PDB 1cii chain A

Region: 113 - 160
Aligned: 44
Modelled: 48
Confidence: 22.0%
Identity: 23%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2
13 |
| c2o6lA_ |

### PDB 2o6l chain A

Region: 45 - 85
Aligned: 41
Modelled: 41
Confidence: 21.4%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7

Phyre2
14 |
| c2r76A_ |

### PDB 2r76 chain A

Region: 61 - 98
Aligned: 37
Modelled: 38
Confidence: 20.3%
Identity: 8%
PDB header:lipoprotein
Chain: A: PDB Molecule:rare lipoprotein b;
PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a

Phyre2
15 |
| d1v7wa2 |

### PDB 1v7w chain A domain 2

Region: 27 - 64
Aligned: 36
Modelled: 38
Confidence: 18.4%
Identity: 19%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: Glycosyltransferase family 36 N-terminal domain

Phyre2
16 |
| d1cola_ |

### PDB 1col chain A

Region: 111 - 163
Aligned: 53
Modelled: 53
Confidence: 18.2%
Identity: 19%
Fold: Toxins' membrane translocation domains
Superfamily: Colicin
Family: Colicin

Phyre2
17 |
| c3fewX_ |

### PDB 3few chain X

Region: 111 - 163
Aligned: 53
Modelled: 53
Confidence: 18.2%
Identity: 19%
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain

Phyre2
18 |
| d2vvpa1 |

### PDB 2vvp chain A domain 1

Region: 62 - 86
Aligned: 25
Modelled: 25
Confidence: 15.9%
Identity: 20%
Fold: Ribose/Galactose isomerase RpiB/AlsB
Superfamily: Ribose/Galactose isomerase RpiB/AlsB
Family: Ribose/Galactose isomerase RpiB/AlsB

Phyre2
19 |
| d1qoja_ |

### PDB 1qoj chain A

Region: 222 - 231
Aligned: 10
Modelled: 10
Confidence: 15.4%
Identity: 60%
Fold: Long alpha-hairpin
Superfamily: C-terminal UvrC-binding domain of UvrB
Family: C-terminal UvrC-binding domain of UvrB

Phyre2
20 |
| c3k7pA_ |

### PDB 3k7p chain A

Region: 62 - 86
Aligned: 25
Modelled: 25
Confidence: 13.6%
Identity: 20%
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3bf2A_ |
|  | 81.1 | 15 | PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of the a1ksw9_neimf protein from2 neisseria meningitidis. northeast structural genomics3 consortium target mr36a
2 | c2jxpA_ |
|  | 63.2 | 13 | PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein b; PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a
3 | d2okfa1 |
|  | 48.0 | 25 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like
4 | d2inba1 |
|  | 47.3 | 20 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like
5 | d1j1ta_ |
|  | 34.3 | 33 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Alginate lyase
6 | d1a9xa2 |
|  | 31.7 | 15 | Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
7 | d1nn4a_ |
|  | 29.2 | 25 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
8 | c3he8A_ |
|  | 28.9 | 40 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
9 | d2ayxa2 |
|  | 26.2 | 27 | Fold:Flavodoxin-like Superfamily:CheY-like Family:RcsC linker domain-like
10 | d1o1xa_ |
|  | 23.2 | 28 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
11 | c3s5pA_ |
|  | 22.6 | 24 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
12 | c1ciiA_ |
|  | 22.0 | 23 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
13 | c2o6lA_ |
|  | 21.4 | 12 | PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
14 | c2r76A_ |
|  | 20.3 | 8 | PDB header:lipoprotein Chain: A: PDB Molecule:rare lipoprotein b; PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a
15 | d1v7wa2 |
|  | 18.4 | 19 | Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain
16 | d1cola_ |
|  | 18.2 | 19 | Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin
17 | c3fewX_ |
|  | 18.2 | 19 | PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain
18 | d2vvpa1 |
|  | 15.9 | 20 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
19 | d1qoja_ |
|  | 15.4 | 60 | Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB
20 | c3k7pA_ |
|  | 13.6 | 20 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
21 | c3m1pA_ |
| not modelled | 13.6 | 20 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
22 | c1uwvA_ |
| not modelled | 12.2 | 32 | PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase
23 | c1rh1A_ |
| not modelled | 11.9 | 16 | PDB header:antibiotic Chain: A: PDB Molecule:colicin b; PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
24 | c1v7wA_ |
| not modelled | 10.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
25 | c2lllA_ |
| not modelled | 9.4 | 38 | PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
26 | d1ufga_ |
| not modelled | 9.3 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
27 | c3jt0B_ |
| not modelled | 8.3 | 32 | PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a
28 | d1x9la_ |
| not modelled | 8.1 | 30 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein
29 | c2cqtA_ |
| not modelled | 7.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
30 | c1w17A_ |
| not modelled | 7.5 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase.
31 | d1i4ma_ |
| not modelled | 7.3 | 32 | Fold:Prion-like Superfamily:Prion-like Family:Prion-like
32 | d1rh1a2 |
| not modelled | 7.2 | 15 | Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin
33 | c2yvqA_ |
| not modelled | 7.0 | 13 | PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
34 | d2as0a2 |
| not modelled | 6.9 | 18 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:hypothetical RNA methyltransferase
35 | c3sz3A_ |
| not modelled | 6.8 | 40 | PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan
36 | c1vraB_ |
| not modelled | 6.4 | 39 | PDB header:transferase Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj; PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
37 | c2vzkD_ |
| not modelled | 6.4 | 44 | PDB header:transferase Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain; PDBTitle: structure of the acyl-enzyme complex of an n-terminal2 nucleophile (ntn) hydrolase, oat2
38 | c2vfyA_ |
| not modelled | 6.1 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain
39 | c3bghB_ |
| not modelled | 5.7 | 22 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative neuraminyllactose-binding hemagglutinin homolog; PDBTitle: crystal structure of putative neuraminyllactose-binding hemagglutinin2 homolog from helicobacter pylori
40 | d1uwva2 |
| not modelled | 5.6 | 32 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:(Uracil-5-)-methyltransferase
41 | c3it4B_ |
| not modelled | 5.5 | 22 | PDB header:transferase Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
42 | c2k6zA_ |
| not modelled | 5.4 | 17 | PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
43 | d1ul7a_ |
| not modelled | 5.3 | 26 | Fold:TBP-like Superfamily:KA1-like Family:Kinase associated domain 1, KA1
44 | c1qy9B_ |
| not modelled | 5.3 | 22 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde
45 | d1x6va3 |
| not modelled | 5.3 | 5 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
46 | d1qwia_ |
| not modelled | 5.1 | 15 | Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins
47 | d1ifra_ |
| not modelled | 5.1 | 25 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
48 | c2lbgA_ |
| not modelled | 5.0 | 26 | PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0