148 c3civA_ Probab=98.35   E-value=0.00025  Score=46.48  Aligned_columns=254  Identities=17%

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCC
Q ss_conf             99999999999769988999985157424157636210000334578888544999999999689689958874102577
Q batch____        89 QAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVN  168 (439)
Q Consensus        89 ~~~~~~Ld~l~~~g~NtV~~qVr~~gdalYpS~~~P~s~~ltg~~g~~p~~DpL~~~I~eAHkrGlevhAW~n~~~~~~~  168 (439)
                      ....+.|+.|+++|+|+|=+.+........+..........       +..+.|..+|++|+++||.|.--+        
T Consensus        26 ~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~i~~A~~~Gl~Vil~~--------   90 (316)
T c3civA_          26 DEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVT-------VSDDEIASMAELAHALGLKVCLKP--------   90 (316)
T ss_dssp             HHHHHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTB-------CCHHHHHHHHHHHHHTTCEEEEEE--------
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHCCCEEEEEC--------
T ss_conf             68999999999839989998232477776776544476776-------797899999999986898799972--------


Q ss_pred             CCCCCCCCCCCCHHHCCCCCCCCCCCCC---CCCCCEEEECCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEEEECCCC
Q ss_conf             6555433444301106653112474310---03387588766888999999999999999---67998898703644677
Q batch____       169 TKPGTIRELNSTLSQQPASVYVQHRDWI---RTSGDRFVLDPGIPEVQDWITSIVAEVVS---RYPVDGVQFDDYFYTES  242 (439)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~---~YdvDGIhlDd~fYP~~  242 (439)
                                        +.......|.   .......+.......+.+.+...+.+...   .-.++-+++.----   
T Consensus        91 ------------------h~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~nE~~~~gne~~---  149 (316)
T c3civA_          91 ------------------TVNCRDGTWRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMT---  149 (316)
T ss_dssp             ------------------EEEETTCCCGGGCCCSBSCCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCT---
T ss_pred             ------------------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC---
T ss_conf             ------------------35888876555667678601255769999999999998799998741998585067777---


Q ss_pred             CCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             65655456888632877689899889999999999999998608972999873121147777876211111001344406
Q batch____       243 PGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYA  322 (439)
Q Consensus       243 ~~~~~~d~~~y~~y~~g~~~~~~WRr~~V~~fV~~i~~~iK~~kp~v~~~isp~g~~~n~~~~p~gs~~~~~~~y~~~~~  322 (439)
                                              +......+++++.+.||++.|.....++....+.+......               
T Consensus       150 ------------------------~~~~~~~~~~~~~~~ir~~dp~~~~~~~~~~~~~~~~~~~~---------------  190 (316)
T c3civA_         150 ------------------------TAEPHEAMWRETIARVRTEYDGLVTYNCNHGREEHVRFWDA---------------  190 (316)
T ss_dssp             ------------------------TTTTCHHHHHHHHHHHHHHCCSEEEEEEETTCTTTCSCGGG---------------
T ss_pred             ------------------------CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC---------------
T ss_conf             ------------------------60014678999999999746997799446886333453334---------------


Q ss_pred             CHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCC-------CCCCCCCCCHH
Q ss_conf             98999873984399740124788753327889888998732788418860055315775444-------54545688989
Q batch____       323 DTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKI-------EPDWMINGGVP  395 (439)
Q Consensus       323 D~~~W~~~G~iD~i~Pq~Y~~~~~~~~~~~~~~~~w~~~~~~~~~~ly~G~~~y~~~~~~~~-------~~~~~~~~~~~  395 (439)
                                +|+|-...|.....    .......-.......+.++++.--.+........       ...+....-..
T Consensus       191 ----------~D~ig~~~Y~~~~~----~~~~~~~~~~~~~~~~kPi~i~E~G~~~~~g~~~~~~~~~~~~~~~~~~Qa~  256 (316)
T c3civA_         191 ----------VDLISSSAYYPIDR----WRDRVPVLREVAEAHEKPLFFMEVGCPSRSGSGACPWDYRHPGAVCLDEQAR  256 (316)
T ss_dssp             ----------SSEEEEECCCCGGG----HHHHHHHHHHHHHHHTCCEEEEEECCCSBTTGGGSTTCTTCCCCBCHHHHHH
T ss_pred             ----------CCEEEEECCCCCCC----HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             ----------57676314777430----6889998654653058857997014522357766765766644569899999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEHHHHCCCCHHHHHH
Q ss_conf             999999998601777879998355411364002478
Q batch____       396 ELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVS  431 (439)
Q Consensus       396 ei~~Qi~~~r~~~~~~G~~~F~~~~l~~~n~~~~~~  431 (439)
                      -+..++...++.+.+.|..+|.+.....+...+..+
T Consensus       257 ~~~~~~~~~~~~~~~~G~~~W~w~~~~~~~~~~~~d  292 (316)
T c3civA_         257 FYEAMFAAMPDEPWFKGYMLWEWPWKLYPREAASED  292 (316)
T ss_dssp             HHHHHHHHSCCCTTEEEEEEEEECSSCCCGGGGGGC
T ss_pred             HHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf             999999998537780259998616878873325648