14/01/2012 20:50:26 : INFO  : Run start: Sat Jan 14 20:50:26 GMT 2012
14/01/2012 20:50:30 : INFO  : Initialised job
14/01/2012 20:50:31 : INFO  : Renaming log file 'phyre2_20120114_205025.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/phyre_20120114_205025.log'
14/01/2012 20:50:32 : INFO  : Initialised job:
Sequence
>batch____
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG
RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH
ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW
RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP
LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN
VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVL
SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAG
IMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHC
IPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFD
FKSAWFAPPDP

14/01/2012 20:50:32 : INFO  : Checked sequence
14/01/2012 20:50:34 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 20:50:35 : INFO  : PSI-BLAST 3 iterations
14/01/2012 20:53:17 : INFO  : PSI-BLAST 5 iterations
14/01/2012 20:57:51 : INFO  : Finished PSI-BLAST
14/01/2012 20:57:54 : INFO  : Running Buildali to generate a3m file
14/01/2012 21:39:09 : INFO  : Converting to HMM
14/01/2012 21:39:44 : INFO  : Calibrating HMM
14/01/2012 21:40:08 : INFO  : Searching HMM database
14/01/2012 21:53:23 : INFO  : Finished buildali
14/01/2012 21:53:24 : INFO  : Predicting secondary structure
14/01/2012 21:53:31 : INFO  : Predicted secondary structure (PSI-Pred)
14/01/2012 21:53:32 : INFO  : Predicting Disordered regions
14/01/2012 21:53:35 : INFO  : Predicted Disorder (Disopred)
14/01/2012 21:53:35 : INFO  : Running memsat_svm check
14/01/2012 21:58:20 : INFO  : Globular protein
14/01/2012 21:58:20 : INFO  : Predicted Transmembrane (memsat_svm) ID '54852ff7525840dd'
14/01/2012 21:58:22 : INFO  : Initialising fold library search
14/01/2012 21:58:24 : INFO  : Initialised search input
14/01/2012 21:58:26 : INFO  : Building Ensemble models
14/01/2012 21:58:29 : INFO  : Building hh.c3tpaA_.model.1.pdb
14/01/2012 21:58:40 : INFO  : Building hh.d1dpea_.model.2.pdb
14/01/2012 21:58:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1dpea_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1dpea_.2.pdb
14/01/2012 21:58:52 : INFO  : Building hh.c2wokA_.model.3.pdb
14/01/2012 21:59:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.c2wokA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/c2wokA_.3.pdb
14/01/2012 21:59:04 : INFO  : Building hh.d1jeta_.model.4.pdb
14/01/2012 21:59:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1jeta_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1jeta_.4.pdb
14/01/2012 21:59:17 : INFO  : Building hh.c3m8uA_.model.5.pdb
14/01/2012 21:59:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.c3m8uA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/c3m8uA_.5.pdb
14/01/2012 21:59:32 : INFO  : Building hh.d1uqwa_.model.6.pdb
14/01/2012 21:59:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1uqwa_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1uqwa_.6.pdb
14/01/2012 21:59:43 : INFO  : Building hh.d1lnwa_.model.7.pdb
14/01/2012 21:59:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1lnwa_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1lnwa_.22.pdb
14/01/2012 21:59:55 : INFO  : Building hh.d1i5za1.model.8.pdb
14/01/2012 22:00:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1i5za1.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1i5za1.23.pdb
14/01/2012 22:00:06 : INFO  : Building hh.d1sfxa_.model.9.pdb
14/01/2012 22:00:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d1sfxa_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d1sfxa_.24.pdb
14/01/2012 22:00:17 : INFO  : Building hh.d2oz6a1.model.10.pdb
14/01/2012 22:00:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d2oz6a1.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d2oz6a1.25.pdb
14/01/2012 22:00:27 : INFO  : Building hh.c3g3zA_.model.11.pdb
14/01/2012 22:00:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.c3g3zA_.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/c3g3zA_.26.pdb
14/01/2012 22:00:39 : INFO  : Building hh.c3bj6B_.model.12.pdb
14/01/2012 22:00:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.c3bj6B_.model.12.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/c3bj6B_.27.pdb
14/01/2012 22:00:50 : INFO  : Building hh.d3broa1.model.13.pdb
14/01/2012 22:00:58 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/hh.d3broa1.model.13.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/54852ff7525840dd/d3broa1.37.pdb
14/01/2012 22:01:01 : INFO  : Building c3tpaA_.1.pdb
14/01/2012 22:01:11 : INFO  : Building d1dpea_.2.pdb
14/01/2012 22:01:21 : INFO  : Building c2wokA_.3.pdb
14/01/2012 22:01:31 : INFO  : Building d1jeta_.4.pdb
14/01/2012 22:01:42 : INFO  : Building c3m8uA_.5.pdb
14/01/2012 22:01:52 : INFO  : Building d1uqwa_.6.pdb
14/01/2012 22:02:02 : INFO  : Building c3o9pA_.7.pdb
14/01/2012 22:02:13 : INFO  : Building d1zlqa1.8.pdb
14/01/2012 22:02:24 : INFO  : Building d1xoca1.9.pdb
14/01/2012 22:02:34 : INFO  : Building c3t66A_.10.pdb
14/01/2012 22:02:44 : INFO  : Building c3rqtA_.11.pdb
14/01/2012 22:02:56 : INFO  : Building c3ry3B_.12.pdb
14/01/2012 22:03:09 : INFO  : Building d1vr5a1.13.pdb
14/01/2012 22:03:19 : INFO  : Building c2o7jA_.14.pdb
14/01/2012 22:03:29 : INFO  : Building c2grvC_.15.pdb
14/01/2012 22:03:38 : INFO  : Building c3ftoA_.16.pdb
14/01/2012 22:03:48 : INFO  : Building c1ztyA_.17.pdb
14/01/2012 22:04:00 : INFO  : Building c2d5wA_.18.pdb
14/01/2012 22:04:11 : INFO  : Building c3pamB_.19.pdb
14/01/2012 22:04:21 : INFO  : Building c3lvuB_.20.pdb
14/01/2012 22:07:00 : INFO  : Finished HH model building
14/01/2012 22:07:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/01/2012 22:08:08 : INFO  : html domain output complete ID '54852ff7525840dd'
15/01/2012 02:10:57 : INFO  : Run end  : Sun Jan 15 02:10:56 GMT 2012
