BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (257 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47534 Uncharacterized protein yaiO n=46 Tax=Enterobact... 524 e-147 UniRef50_B2FI34 Putative uncharacterized protein n=1 Tax=Stenotr... 149 8e-35 >UniRef50_Q47534 Uncharacterized protein yaiO n=46 Tax=Enterobacteriaceae RepID=YAIO_ECOLI Length = 257 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL Sbjct: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 Query: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK Sbjct: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 Query: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND Sbjct: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 Query: 181 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP 240 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP Sbjct: 181 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP 240 Query: 241 TDDFNGLQLAARLTWKF 257 TDDFNGLQLAARLTWKF Sbjct: 241 TDDFNGLQLAARLTWKF 257 >UniRef50_B2FI34 Putative uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FI34_STRMK Length = 261 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 1/249 (0%) Query: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 +I+ L A + + A+AG+ +T D DYS G R++ ++ + + L Sbjct: 4 IIRGALPCALLLAVCSAHAGVDRVTVQLDHADYSDGFGKRDVQTVDVAGRSGGSRWHLGL 63 Query: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 + G RDY + F+ R QG++ ++W+ L+TRT + +++ PVF + QDI + P+ Sbjct: 64 AHGERDYGSRRFSGNRMQGSLHHRWSPRLSTRTAVTASNDDPVFVNRQVNQDIQWKVTPQ 123 Query: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 T+ + G +Y +Y+ V W G S Y V S R+ + S+ + +S+RL D Sbjct: 124 TVLSVGGKYAQYHAGAHVSGWSVGASHYFPRVTASLRHERHRQSNGPDGHGTTLSLRLKD 183 Query: 181 PRGTGYTQLWLSRGTGAYTYDWTP-ETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDT 239 +G G TQLWL GT YT + P R + L+R QPL E L L + GK W+ T Sbjct: 184 GQGRGSTQLWLGSGTSGYTAESDPLLLREHDARRAFLRRSQPLGEHLVLDVGIGKTWHRT 243 Query: 240 PTDDFNGLQ 248 D F +Q Sbjct: 244 RLDSFQSVQ 252 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47534 Uncharacterized protein yaiO n=46 Tax=Enterobact... 411 e-114 UniRef50_B2FI34 Putative uncharacterized protein n=1 Tax=Stenotr... 387 e-106 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q47534 Uncharacterized protein yaiO n=46 Tax=Enterobacteriaceae RepID=YAIO_ECOLI Length = 257 Score = 411 bits (1057), Expect = e-114, Method: Composition-based stats. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL Sbjct: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 Query: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK Sbjct: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 Query: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND Sbjct: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 Query: 181 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP 240 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP Sbjct: 181 PRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDTP 240 Query: 241 TDDFNGLQLAARLTWKF 257 TDDFNGLQLAARLTWKF Sbjct: 241 TDDFNGLQLAARLTWKF 257 >UniRef50_B2FI34 Putative uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FI34_STRMK Length = 261 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 1/249 (0%) Query: 1 MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAYAELVAKVENATLLFNL 60 +I+ L A + + A+AG+ +T D DYS G R++ ++ + + L Sbjct: 4 IIRGALPCALLLAVCSAHAGVDRVTVQLDHADYSDGFGKRDVQTVDVAGRSGGSRWHLGL 63 Query: 61 SQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTPVFARQDFRQDINLALLPK 120 + G RDY + F+ R QG++ ++W+ L+TRT + +++ PVF + QDI + P+ Sbjct: 64 AHGERDYGSRRFSGNRMQGSLHHRWSPRLSTRTAVTASNDDPVFVNRQVNQDIQWKVTPQ 123 Query: 121 TLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTHYDSSDAGGSYSNMISVRLND 180 T+ + G +Y +Y+ V W G S Y V S R+ + S+ + +S+RL D Sbjct: 124 TVLSVGGKYAQYHAGAHVSGWSVGASHYFPRVTASLRHERHRQSNGPDGHGTTLSLRLKD 183 Query: 181 PRGTGYTQLWLSRGTGAYTYDWTP-ETRYGSMKSVSLQRIQPLTEQLNLGLTAGKVWYDT 239 +G G TQLWL GT YT + P R + L+R QPL E L L + GK W+ T Sbjct: 184 GQGRGSTQLWLGSGTSGYTAESDPLLLREHDARRAFLRRSQPLGEHLVLDVGIGKTWHRT 243 Query: 240 PTDDFNGLQ 248 D F +Q Sbjct: 244 RLDSFQSVQ 252 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.135 0.383 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,015,236,148 Number of Sequences: 3077464 Number of extensions: 40655426 Number of successful extensions: 94363 Number of sequences better than 1.0e-01: 2 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94357 Number of HSP's gapped (non-prelim): 4 length of query: 257 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 131 effective length of database: 652,635,892 effective search space: 85495301852 effective search space used: 85495301852 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 91 (39.7 bits)