BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (226 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 466 e-130 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 226 7e-58 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 209 5e-53 UniRef50_Q9F8J7 Putative transcriptional regulatory protein (Fra... 192 7e-48 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 182 7e-45 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 173 3e-42 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 171 2e-41 UniRef50_C4X351 Two-component response regulator for citrate n=2... 166 5e-40 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 165 1e-39 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 165 1e-39 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 163 4e-39 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 163 5e-39 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 160 3e-38 UniRef50_A4SN90 Two-component system citrate/malate response reg... 159 8e-38 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 157 3e-37 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 156 4e-37 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 156 4e-37 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 155 1e-36 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 154 3e-36 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 151 2e-35 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 150 4e-35 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 149 5e-35 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 149 8e-35 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 148 1e-34 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 146 5e-34 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 142 7e-33 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 142 1e-32 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 140 5e-32 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 139 7e-32 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 137 2e-31 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 137 3e-31 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 136 4e-31 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 134 2e-30 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 132 8e-30 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 130 3e-29 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 130 4e-29 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 129 6e-29 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 129 6e-29 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 127 2e-28 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 127 3e-28 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 126 5e-28 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 125 1e-27 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 124 2e-27 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 124 2e-27 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 124 3e-27 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 123 5e-27 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 123 6e-27 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 122 7e-27 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 121 1e-26 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 121 2e-26 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 121 2e-26 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 120 4e-26 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 120 4e-26 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 120 5e-26 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 119 6e-26 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 119 6e-26 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 119 7e-26 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 118 2e-25 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 118 2e-25 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 117 3e-25 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 117 3e-25 UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 117 3e-25 UniRef50_Q8NU70 Two-component system, response regulators consis... 117 3e-25 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 116 5e-25 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 116 6e-25 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 116 6e-25 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 115 8e-25 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 114 2e-24 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 114 2e-24 UniRef50_C9Z825 Putative two component system response regulator... 114 2e-24 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 114 3e-24 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 113 6e-24 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 111 2e-23 UniRef50_B1W256 Putative two-component system response regulator... 110 3e-23 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 110 3e-23 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 110 4e-23 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 109 5e-23 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 109 7e-23 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 109 9e-23 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 108 1e-22 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 107 3e-22 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 107 4e-22 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 105 1e-21 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 104 2e-21 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 103 4e-21 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 102 7e-21 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 102 7e-21 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 102 7e-21 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 102 7e-21 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 100 2e-20 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 100 3e-20 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 100 5e-20 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 100 6e-20 UniRef50_B1W048 Putative two-component system response regulator... 99 8e-20 UniRef50_B2GLU0 Putative CriR family two-component response regu... 98 2e-19 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 97 5e-19 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 96 8e-19 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 95 2e-18 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 94 3e-18 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 94 5e-18 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 92 1e-17 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 91 2e-17 UniRef50_UPI000050FA19 putative two-component response regulator... 91 3e-17 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 91 3e-17 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 91 4e-17 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 89 8e-17 UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=... 89 1e-16 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 87 3e-16 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 86 7e-16 UniRef50_UPI0001BC2D80 two-component system response regulator n... 84 5e-15 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 84 5e-15 UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renib... 82 9e-15 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 79 9e-14 UniRef50_A5EWK6 Response regulator, NtrX n=1 Tax=Dichelobacter n... 79 2e-13 UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=... 77 5e-13 UniRef50_Q13VN4 Two component, sigma54 specific, transcriptional... 72 2e-11 UniRef50_Q47K41 Helix-turn-helix, Fis-type n=1 Tax=Dechloromonas... 71 3e-11 UniRef50_Q3IJW8 Putative transcriptional regulator sensing dicar... 71 3e-11 UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional... 70 4e-11 UniRef50_Q1D326 Sigma-54 dependent DNA-binding response regulato... 70 7e-11 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 69 9e-11 UniRef50_B8KKR5 Sigma-54 interaction domain family protein n=1 T... 69 1e-10 UniRef50_Q6I3M3 Two-component response regulator, citrate/malate... 69 1e-10 UniRef50_Q2YC24 Two component, sigma54 specific, transcriptional... 69 1e-10 UniRef50_Q7UEQ7 Sensor protein n=1 Tax=Rhodopirellula baltica Re... 67 3e-10 UniRef50_A5UQ67 Response regulator receiver modulated metal depe... 67 4e-10 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 67 4e-10 UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinel... 67 5e-10 UniRef50_A4JCR7 Two component, sigma54 specific, transcriptional... 67 6e-10 UniRef50_C6D6D4 Two component transcriptional regulator, AraC fa... 67 6e-10 UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional... 66 8e-10 UniRef50_B5JSZ7 Response regulator receiver:LytTr DNA-binding re... 66 8e-10 UniRef50_Q1LIR4 Two component, sigma54 specific, transcriptional... 66 1e-09 UniRef50_C2G2I4 Response regulator n=1 Tax=Sphingobacterium spir... 65 1e-09 UniRef50_A8FXH4 Two component, sigma54 specific, transcriptional... 65 2e-09 UniRef50_C5V0U3 Response regulator receiver protein n=2 Tax=Gall... 65 2e-09 UniRef50_C8XCJ5 Two component transcriptional regulator, LytTR f... 65 2e-09 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 64 3e-09 UniRef50_C6S9I1 Nitrogen assimilation regulatory protein NtrX n=... 64 3e-09 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 64 3e-09 UniRef50_B0S387 Two-component response regulator n=6 Tax=Clostri... 64 4e-09 UniRef50_C0CZK4 Putative uncharacterized protein n=1 Tax=Clostri... 64 4e-09 UniRef50_Q0AV33 Response regulator receiver protein n=1 Tax=Synt... 64 4e-09 UniRef50_D2R311 Two component, sigma54 specific, transcriptional... 64 4e-09 UniRef50_UPI0001C35D95 histidine ammonia-lyase n=1 Tax=Clostridi... 64 5e-09 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 63 6e-09 UniRef50_UPI0001698479 sigma-54 dependent DNA-binding response r... 63 6e-09 UniRef50_A7K511 Response regulator n=30 Tax=Gammaproteobacteria ... 63 7e-09 UniRef50_O07050 FK506 binding protein (fkpA) n=1 Tax=Aeromonas h... 63 8e-09 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 63 8e-09 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 63 9e-09 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 63 9e-09 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 63 9e-09 UniRef50_A9KTC8 Two component transcriptional regulator, AraC fa... 62 1e-08 UniRef50_C6L8Z1 Putative response regulator receiver domain prot... 62 1e-08 UniRef50_D0XEF1 Putative uncharacterized protein n=1 Tax=Vibrio ... 62 1e-08 UniRef50_D0KVR8 Two component, sigma54 specific, transcriptional... 62 1e-08 UniRef50_A9BWZ0 Two component, sigma54 specific, transcriptional... 62 1e-08 UniRef50_C7MLP3 Response regulator of the LytR/AlgR family n=8 T... 62 2e-08 UniRef50_B8G9X0 Response regulator receiver protein n=3 Tax=Chlo... 62 2e-08 UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnos... 62 2e-08 UniRef50_A0Z5D9 LuxO repressor protein n=1 Tax=marine gamma prot... 62 2e-08 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 61 2e-08 UniRef50_Q31J89 Two component, sigma54 specific, transcriptional... 61 2e-08 UniRef50_B4SBH8 Two component, sigma54 specific, transcriptional... 61 3e-08 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 61 3e-08 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 61 3e-08 UniRef50_B9M936 Two component, sigma54 specific, transcriptional... 61 3e-08 UniRef50_C6D3P9 Two component transcriptional regulator, AraC fa... 61 4e-08 UniRef50_C6X6J4 Two component, sigma54 specific, transcriptional... 61 4e-08 UniRef50_Q1D407 Sensor protein n=2 Tax=Cystobacterineae RepID=Q1... 61 4e-08 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 60 4e-08 UniRef50_B8CZL9 Response regulator receiver protein n=1 Tax=Halo... 60 4e-08 UniRef50_C8NB60 Nitrogen assimilation regulatory protein NtrX n=... 60 4e-08 UniRef50_B7JR06 DNA-binding response regulator n=23 Tax=Bacillus... 60 5e-08 UniRef50_D2QDN3 Two component transcriptional regulator, LytTR f... 60 5e-08 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 60 5e-08 UniRef50_C6X8K9 Two component, sigma54 specific, transcriptional... 60 5e-08 UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax... 60 6e-08 UniRef50_Q3JAF7 Two component transcriptional regulator, LuxR fa... 60 7e-08 UniRef50_Q0HQS8 Response regulator receiver sensor signal transd... 60 7e-08 UniRef50_A6G241 Response regulator receiver protein n=1 Tax=Ples... 60 8e-08 UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydr... 60 8e-08 UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding... 60 8e-08 UniRef50_C1PB78 Two component transcriptional regulator, AraC fa... 60 8e-08 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 59 9e-08 UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=P... 59 9e-08 UniRef50_C6D7S6 Two component transcriptional regulator, AraC fa... 59 9e-08 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 59 1e-07 UniRef50_A6QCV7 Two-component response regulator n=1 Tax=Sulfuro... 59 1e-07 UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 1... 59 1e-07 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 59 1e-07 UniRef50_B9ZLS8 Response regulator receiver modulated diguanylat... 59 1e-07 UniRef50_B8FR15 Two component transcriptional regulator, LytTR f... 59 1e-07 UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional... 59 1e-07 UniRef50_C0DAU7 Putative uncharacterized protein n=1 Tax=Clostri... 59 1e-07 UniRef50_B3PDX5 Response regulator n=1 Tax=Cellvibrio japonicus ... 59 1e-07 UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clos... 59 2e-07 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 59 2e-07 UniRef50_UPI000174558D two component, sigma54 specific, transcri... 59 2e-07 UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_3... 59 2e-07 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 59 2e-07 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 59 2e-07 UniRef50_UPI000178A004 two component transcriptional regulator, ... 58 2e-07 UniRef50_B9Z3N9 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_Q47FN6 Response regulator receiver n=1 Tax=Dechloromona... 58 2e-07 UniRef50_Q222P9 Two component, sigma54 specific, transcriptional... 58 2e-07 UniRef50_A3ZMD1 Sensor protein n=1 Tax=Blastopirellula marina DS... 58 2e-07 UniRef50_B9ZLA8 Putative two component, sigma54 specific, transc... 58 2e-07 UniRef50_Q28LI0 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_B2J497 Sensor protein n=3 Tax=Nostocaceae RepID=B2J497_... 58 3e-07 UniRef50_A5CX51 Two-component response regulator n=5 Tax=Bacteri... 58 3e-07 UniRef50_B0MQP5 Putative uncharacterized protein n=2 Tax=Eubacte... 58 3e-07 UniRef50_B5IGK2 Response regulator receiver domain protein n=2 T... 58 3e-07 UniRef50_B0TBI1 Sensory transduction protein lytt n=1 Tax=Heliob... 58 3e-07 UniRef50_A8ERR4 Two-component response regulator n=2 Tax=Campylo... 58 3e-07 UniRef50_B1Y8I8 Two component transcriptional regulator, Fis fam... 57 3e-07 UniRef50_D0LSR9 Two component transcriptional regulator, LytTR f... 57 3e-07 UniRef50_Q1IUM5 Transcriptional regulator, LytR/AlgR family n=1 ... 57 3e-07 UniRef50_C6W416 Two component transcriptional regulator, LytTR f... 57 3e-07 UniRef50_C4G759 Putative uncharacterized protein n=1 Tax=Abiotro... 57 4e-07 UniRef50_C6D796 Two component transcriptional regulator, AraC fa... 57 4e-07 UniRef50_C1A9Q4 Putative response regulator n=1 Tax=Gemmatimonas... 57 4e-07 UniRef50_Q1H1W5 Two component, sigma54 specific, transcriptional... 57 4e-07 UniRef50_B3E2Y5 Two component transcriptional regulator, LytTR f... 57 4e-07 UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional... 57 4e-07 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 57 5e-07 UniRef50_B8KBX1 Transcriptional regulator n=4 Tax=Vibrio RepID=B... 57 5e-07 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 57 5e-07 UniRef50_C7I3C8 Two component, sigma54 specific, transcriptional... 57 5e-07 UniRef50_B1Y636 Two component, sigma54 specific, transcriptional... 57 5e-07 UniRef50_Q3JAP9 Two component, sigma54 specific, transcriptional... 57 5e-07 UniRef50_B6WPS9 Sensor protein n=1 Tax=Desulfovibrio piger ATCC ... 57 6e-07 UniRef50_UPI0001788E64 two component transcriptional regulator, ... 57 6e-07 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 57 6e-07 UniRef50_B5ELA2 Two component, sigma54 specific, transcriptional... 57 6e-07 UniRef50_D2QJ93 Two component transcriptional regulator, LytTR f... 57 7e-07 UniRef50_A6GL08 Two-component response regulator n=1 Tax=Limnoba... 56 7e-07 UniRef50_C1D4M1 Putative PAS/PAC sensor protein n=1 Tax=Laribact... 56 7e-07 UniRef50_A6BZU5 Transcriptional regulatory protein zraR n=2 Tax=... 56 7e-07 UniRef50_C7IBY4 Two component transcriptional regulator, AraC fa... 56 8e-07 UniRef50_Q0A5C4 Two component, sigma54 specific, transcriptional... 56 8e-07 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 56 8e-07 UniRef50_Q3J8E1 Sensor protein n=2 Tax=Nitrosococcus oceani RepI... 56 8e-07 UniRef50_B9R1S4 Sigma-54 interaction domain family n=1 Tax=Labre... 56 8e-07 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 56 8e-07 UniRef50_UPI0001BC60C8 two component, sigma54 specific, Fis fami... 56 8e-07 UniRef50_A6GZR7 Two-component system response regulatory protein... 56 8e-07 UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clost... 56 8e-07 UniRef50_A0LMH7 Two component, sigma54 specific, transcriptional... 56 8e-07 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 466 bits (1200), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/226 (100%), Positives = 226/226 (100%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL Sbjct: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR Sbjct: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA Sbjct: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG Sbjct: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 112/226 (49%), Positives = 154/226 (68%), Gaps = 1/226 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LIVEDET +A++H+ Y++ F + +A ++ +AR M+ KP LI LDNYL Sbjct: 1 MMELIDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKPKLIFLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGI L EL DV+F TAASDMETV EAVRCGVFDYL+KPIAY+R+ +L R Sbjct: 61 PDGRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLER 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHT 179 + + L + DS +Q+ +DE+FN A+ + D LP GID LTL +++++ EP +T Sbjct: 121 YLKYISSLRANDSVNQRHVDELFNFQAKTDQLDGLPKGIDELTLIKIQEIYHHEPQAAYT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 AE + QA+ IS+TTARRYLEYC + + A I HG+VGRP+R+Y Sbjct: 181 AELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQK 226 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 144/222 (64%), Gaps = 2/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +T LIVEDE LAE+ + I+ P F I +A L AR + ++P LILLDN+LPDG+ Sbjct: 4 ITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQPQLILLDNFLPDGK 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+L+ V HY G ++F TA + MET+SEA+R GVFDYLIKP+ Y+RL TL RF + Sbjct: 64 GIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFARY 123 Query: 125 KHMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + L S + ASQ +D +FN AR EP GID T V +LF +P V HTA++ Sbjct: 124 RSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQLFADPTVVHTADS 183 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A+ L S+TTARRYLE + AEI +GKVGRP+RIYH Sbjct: 184 LARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRPERIYH 225 >UniRef50_Q9F8J7 Putative transcriptional regulatory protein (Fragment) n=2 Tax=Bacteria RepID=Q9F8J7_CARHY Length = 130 Score = 192 bits (488), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 92/96 (95%), Positives = 93/96 (96%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTAPLTLLIVED TPLAEMHAEYI HIPGFSQILLAGN+AQARMMIERFKPGLILLDNYL Sbjct: 1 MTAPLTLLIVEDGTPLAEMHAEYIGHIPGFSQILLAGNMAQARMMIERFKPGLILLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEA 96 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVS A Sbjct: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSTA 96 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 145/222 (65%), Gaps = 3/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ + ++ + I+ F+ + +A + AR +I+ ++P LILLDNYLPDG Sbjct: 4 IDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTIIQAYQPQLILLDNYLPDGL 63 Query: 65 GINLLHELV--QAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI+L +++ + DVV TA+ D+ TV EA++ G FDYL+KPI+++R QTL R+ Sbjct: 64 GIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQRYL 123 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAE 181 + +++ D+ +QK IDE+FN R + LP GI+ +TL+ + +L G + T E Sbjct: 124 DLNNAMKAYDNLNQKYIDELFNIQHRKQQVSLLPKGIEQITLDKIIRLLSLNNGDKFTVE 183 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 V+ +S+TTARRYLEYCA+ LII+E +GKVGRP+R+Y Sbjct: 184 KVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRPERVY 225 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 129/218 (59%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIVEDE LA +HAE ++ P + +A LA A I +P L+LLDNYLPDG+GI Sbjct: 36 VLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQIRDKRPHLVLLDNYLPDGKGI 95 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L L + V+F TAASDM+T S+A+R G FDYL+KP++++RL +L RF Q + Sbjct: 96 TLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLERFVQFRE 155 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETVAQ 185 Q+ +D ++ AR D GI+ TL V++LF + Q + + V Sbjct: 156 QQRVWKIVDQQNVDSLYQLQARSFRPDSGAKGIEESTLTLVQRLFVDSREQIFSVDDVVS 215 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A +S+TT RRYLE+C + E+++GK+G P+R+Y Sbjct: 216 ATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLY 253 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 144/227 (63%), Gaps = 3/227 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M A ++++ED+ +AE+H Y+ + GF + +A ++A M ++ KP L+LLD YL Sbjct: 1 MNAITRVMVIEDDIAIAELHHRYLEQMGGFDVVGIATTQSEALMQLDILKPDLVLLDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+++L+ + ++ DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGCGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLNAVRKLFKEPGVQH 178 ++ ++ ES+ +Q +D+M A A+ + + LP GID +TL+ +R +F++ + Sbjct: 121 YQSQQQEFESVSDLNQGLVDKMLQANAKADSRKVSTLPKGIDGVTLDKIRAIFQQADIAD 180 Query: 179 -TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA+ + + SRTTARRYLE+ + ++A++ +G VGRP+R Y+ Sbjct: 181 ITADEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRPERCYN 227 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 131/218 (60%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI+EDE+ LA +HAE ++ P +A +LAQAR ++ P L+LLDNYLPDG+G+ Sbjct: 9 VLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGV 68 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ + A V+F TAASDMET S+A+R G FDY++KP++++RL Q+L RF Q Sbjct: 69 TLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYD 128 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETVAQ 185 Q+ +D ++ A+ D GI+ TL V+ LF + + + V Sbjct: 129 QQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVS 188 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A +S+TTARRYLE+ + E+++GK+G P+R+Y Sbjct: 189 AAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLY 226 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 132/219 (60%), Gaps = 5/219 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L ++IVED+ + +HA++++ F+ + + LA A+ M+E KP L+++DNYLPDG Sbjct: 4 LNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAKPDLVIVDNYLPDGL 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L+ L+ + TAA D+ET +A R G FDY++KP+ Y RL ++L RF + Sbjct: 64 GIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQRFYRL 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +H + Q+ +DE+F+ R +P+ T ID TL + + F V+HTA+++A Sbjct: 124 RHPEPFSKAVRQQDLDELFHP-QRSKPQ----TTIDDFTLEQMLEHFSHTNVEHTADSMA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L IS++TARRYL+ I A + HGKVGRP R+Y Sbjct: 179 LRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVY 217 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 133/224 (59%), Gaps = 4/224 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ LLI ED+ +AE+ +I+ + +A LA AR E KP LILLD Y PDG Sbjct: 3 PIRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADAREQAEVLKPDLILLDVYFPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL EL ++ DV+ TAA ++ET+ A+R GVFDY++KP+A+ERL + + RF Sbjct: 63 NGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFCD 122 Query: 124 RKHMLESIDSASQKQIDEMF--NAYARG-EPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 L ++ Q ++D + N+ G + LP GID +TL+ +R++ + G +A Sbjct: 123 HVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVAD-GKPWSA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E V A+ SRTTARRYLEY + AE+ +G +GRP+R Y Sbjct: 182 EEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYR 225 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 137/224 (61%), Gaps = 2/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ ++I+ED+ +AE+H +Y+ + G + +A +A M ++ KP L+L+D YL Sbjct: 1 MSMATRVMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEAEMQLDILKPDLLLMDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ +L+ L + DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGTGLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + ++ L+ +S Q +D+M ++A + + LP GID +TL+ +R+LF V T Sbjct: 121 YVSQRQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELFPNGSV-LT 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+ + + SRTTARRYLEY S + A++ +G VGRP+R Y Sbjct: 180 ADEAGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRPERCY 223 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ + +A N +AR + E +P ++LLD Y PD Sbjct: 2 IRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEARELTEVLRPDVLLLDVYFPDMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR-- 122 GI+ L + Q D++ TAA +++T+ +A+ GVFDY+IKPI + R +TL R++ Sbjct: 62 GISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRYKDY 121 Query: 123 --QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + ++ + Q+ +DE+ + + LP GI PLTL V + K+ TA Sbjct: 122 HDKMQQWMKEKEWIGQEDVDELIGRELSAKEQPSLPKGIQPLTLEKVLVVVKQCRDGVTA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 E V Q + +SRTTARRYLEY S ++A+I +G VGRP+RIY Sbjct: 182 EEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYRK 226 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T++IVEDE +A + A+Y+ + I +A +++ AR ++ P L+LLD YLPDG G Sbjct: 3 TVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGAITPDLLLLDVYLPDGNG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 +NLL EL +VV TAA +++ + +A++ GVFD+L+KP+ RL Q L+RF R+ Sbjct: 63 LNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRFESRQ 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLNAVRKLFK-EPGVQHTAET 182 L + + +Q +D F G K LP G+D LTL +R++F +P + TA+ Sbjct: 123 LKLSATEELTQSVVD-AFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLTAQM 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 V + L +SR+TARRYLE+ + + A+ +G +GRP+R YH Sbjct: 182 VGEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRPERCYH 223 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +AE+H +++ + GF + + L AR I KP L+LLD +LPDG Sbjct: 2 IKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQIGILKPDLVLLDVWLPDGE 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL EL QA DV+ TAA + + EA+R GV D+++KP+ +ERL TL + Q Sbjct: 62 GFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNYCQS 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + L ID Q+ +D +F + LP GID LTL R L GV +AE + Sbjct: 122 RAALADID---QQAVDALFGTPLQQVAAGGLPKGIDALTLQ--RVLAALTGVGASAEEIG 176 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +SRTTARRYLE+ + L E+ +G VGRP+R Y + Sbjct: 177 NRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQA 217 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 132/219 (60%), Gaps = 4/219 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +LI+ED+ +A +H+++I F + +A NLAQA + + L+++DNYLPDG Sbjct: 2 FNVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKLAQTVFDLVIIDNYLPDGL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ L ++ + P + + TAA+D+ETV +A+RCG DYL+KP+ Y+R Q+L +F Sbjct: 62 GIDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKFALV 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +H L S +Q ++D +F +G P ++ + D TL + F V+ + +A Sbjct: 122 QHTLSHGISLAQGELDALFQ---KGVPSNK-KSSTDAHTLKQILDEFYHANVELSVSAIA 177 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 ++ +IS++TARRYL+ + + A + HGKVGRP RIY Sbjct: 178 ESFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIY 216 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 117/203 (57%), Gaps = 2/203 (0%) Query: 23 YIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVV 82 +IR P F + A LA AR+ I KP L++LDNYLPDG GI+++ L DV+ Sbjct: 8 FIRKHPEFLLLGSADTLADARLAIAAQKPDLVMLDNYLPDGTGIDMMKHLRATQPEVDVI 67 Query: 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEM 142 F TAA+D+ET+ A+R G DYL+KP ERL + L + + Q +ID + Sbjct: 68 FITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSHLQQDEIDRV 127 Query: 143 F-NAYARGEPKDEL-PTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEY 200 + P + P GID LTLN VR F QHTA++++ + IS++TARRYLEY Sbjct: 128 IRQSIPHHVPAGFIYPKGIDELTLNQVRAAFSGEHTQHTADSLSDMIGISKSTARRYLEY 187 Query: 201 CASRHLIIAEIVHGKVGRPQRIY 223 C + L+ A I HG VGRPQR Y Sbjct: 188 CKNIKLLEAHIQHGTVGRPQRFY 210 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE+H +I + F I +A NL A +I KP L+++DNYLPDG Sbjct: 2 IKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAKPDLVIIDNYLPDGL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ + + + TAA+D TV A R G FDYL+KP+ Y RL +L R + Sbjct: 62 GVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRLMKM 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 K +++S Q ++D +F+A E + +G+D TL V LF +HTA +VA Sbjct: 122 KQLVDSQKMVKQSELDGIFHA---TELVVDEASGVDEFTLQQVVSLFPHGHSEHTAASVA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 L +S++TARRYL+ R + A + HGKVGRP R Y + Sbjct: 179 ALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYRN 219 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%), Gaps = 1/218 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A +H + + GF + +A LA A M E KP L+LLD Y P+G Sbjct: 2 IKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEMTEILKPELVLLDMYFPEGS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L ++ + D++ TAA D+ + EAVR G FDY++KP+ +ER ++L RF+ Sbjct: 62 GMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSLNRFKDY 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + Q ID + + ++ + +P GIDP+TL + +F++ +++ V Sbjct: 122 LKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIISVFEKKHEAMSSDEV 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQR 221 + + SR TARRYLEY ++ +I +G VGRP++ Sbjct: 182 GRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEK 219 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L + IVED+ A++H + I I GFS I +A N A+ ++ KP L+LLD +LPDG Sbjct: 4 LQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLLPDVKPDLVLLDIFLPDGS 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL + Q DV+ TAA ++E V +A+R G DYLIKPI + RL +TL +R Sbjct: 64 GMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYRSY 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDEL-----PTGIDPLTLNAVRKLFK--EPGVQ 177 + + + S Q +D + A R K+++ P GID LTL V + E Sbjct: 124 RLKVNEMSSIDQTDVDSLM-AKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSDG 182 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TAE++ + + +SRTTARRYLE+ A+ + E+ +G VGRP+R Y Sbjct: 183 ITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 13/228 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP---GLILLDNYLP 61 + +LI ED+ +A +HA YI+ I GF +AG A+ M E + LILLD Y+P Sbjct: 3 MKVLIAEDDFRIAAIHASYIQQIEGFQ---VAGKAKSAKDMWEALQQEQVDLILLDVYMP 59 Query: 62 DGRGINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 D G NLL L++ YP DV+ TAA++ + +A++ GV YLIKP+ ++ Q LT Sbjct: 60 DELGTNLLP-LLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTE 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKD----ELPTGIDPLTLNAVRKLFKEPGV 176 ++++K M+ S D +Q ID +F + EPK+ +LPTGI+ LTL+ V+ L + Sbjct: 119 YKEKKDMINSKDEVNQTMID-LFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESEND 177 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AE + + + SRTTARRY+EY + AE+ +G +GRP+R Y+ Sbjct: 178 GISAEELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKYY 225 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 2/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED + ++H ++ + GF + +A +L +A I +P LILLD + PDG Sbjct: 4 IQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETIAVLQPDLILLDLFFPDGH 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L + DV+ TA D+ ++ +A+R G FDY++KP+ ++R ++L +++ Sbjct: 64 GMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKYKTF 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGVQH-TAET 182 K + + + QK D +F + + E D++P GIDPLTL V+ E G + A+ Sbjct: 124 KTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGICAQE 183 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + SR TARRYLEY S I A+I +G VGRP+R Y Sbjct: 184 TGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKY 224 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 141/238 (59%), Gaps = 14/238 (5%) Query: 1 MTAPL-TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK---PGLILL 56 M P+ +LIVED+ +AE+ ++ + GF+ I L A+ + P LILL Sbjct: 1 MQNPMYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILL 60 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D Y+PD G++L ++ + + D+V TAA ++ T+ EA+R G+FDY++KP+ + R + Sbjct: 61 DVYIPDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKR 120 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEP-----KDELPTGIDPLTLNAVRKLF 171 TL F+ ++ L S + +Q++ID + A + + +++LP GID +TL+ V+ + Sbjct: 121 TLDTFKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNIL 180 Query: 172 ---KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 + G+ TA ++ +A+ ISR+TARRYLEY S AE+ +G VGRP+R+Y S Sbjct: 181 SLHSDTGI--TASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRPERLYISN 236 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ I +A N +A+ +E +P L+LLD Y PD Sbjct: 2 IRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKDQMEILQPDLVLLDIYFPDMD 61 Query: 65 GINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL---TR 120 G++ L +++ +P DV+ TAA +++ V EA+R GVFD++ KP+ + RL QTL Sbjct: 62 GLDFLS-IIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTLRNYQE 120 Query: 121 FRQR-KHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGVQH 178 FRQ+ + D SQ QIDE+ + + P+ + GID +TL+ + + + Sbjct: 121 FRQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFLMQTQ-EA 179 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 T + V++ ISR+TARRYLEY ++ IA++ +G VGRP+R+Y S Sbjct: 180 TTDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYKS 226 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I ED+ +AE+H ++++ + + A N +A + +P ++LLD YLPD Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLANMHQPDVLLLDVYLPDRL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+++L EL QA +V TAA++ +A++ GV DYL+KPIA+ERL Q++ + + Sbjct: 61 GVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAKSL 120 Query: 125 KHMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + L+ Q+ D+ F A + P + LP GID LTL VR L ++ TAE + Sbjct: 121 RKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLRQQSEGVTAEAL 180 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + SRTT+RRYLEY S + AE+ +G VGRP+R Y + Sbjct: 181 GRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKYWA 222 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +T++IVED+ A ++ ++ + GF I A QA M+ P ++LLD YLPD Sbjct: 6 ITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEMLHVVTPDVLLLDIYLPDMN 65 Query: 65 GINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+LL E V+ H+ G DVV TAA+D+ETV EA+R G + Y+IKPI ++ TL ++ Sbjct: 66 GIDLLRE-VRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLEQYAN 124 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKD------ELPTGIDPLTLNAVRKLFKEPGVQ 177 +H L+ + Q +D++F A LP GID LTL +R +E Sbjct: 125 TRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIRDKMQETTQS 184 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+ +A +S +T RRYLE+ S + + E +G VGRP+R Y Sbjct: 185 MNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKY 230 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 9/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +LIVED+ + +++ ++ I GF I A N A+ ++ +P L+LLD YLPD Sbjct: 4 LEVLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELLSCTRPQLVLLDVYLPDML 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G L+ + Q + DV+ TAA +ME V EA+R GV+DY++KP+ +ER + L + R Sbjct: 64 GTELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESY--R 121 Query: 125 KHMLESIDS--ASQKQIDEMFNAYARGEPKDE---LPTGIDPLTLNAVRKLFKEPGVQH- 178 KH++ + ++ Q+ ID+M PK+ P GID LTL V + ++ G + Sbjct: 122 KHVIRTREAVEVDQEVIDQMLTRRLVA-PKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGV 180 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AE + + + SRTTARRYLEY A++++G VGRP+R Y Sbjct: 181 SAEEIGREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYR 226 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 119/219 (54%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+ ED+ +A++H +Y+ I A + ++ K L+LLD YLPD Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKLKENKFDLLLLDVYLPDEL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GIN++ Q H ++ TAA+D+E + +A GV DYLIKPIA +RL + + + Sbjct: 61 GINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAINKAVKN 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S +Q+ D++F K E P GID LTL V ++ ++ TA+ V Sbjct: 121 HQFIRSQGEFTQQLADQLFQNQQEIMEKQEYPKGIDELTLKKVNEVLQKQSSGMTADQVG 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + +SRTTARRYLEY S AE+ +G VGRP+R Y Sbjct: 181 KDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKY 219 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 17/230 (7%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + + +LIVED+ + E++ +I +PGF + +A + +A MI+ P L+LLD YLPD Sbjct: 2 SQIGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMIKELSPDLVLLDIYLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL---- 118 G+ L E+ + P DV+ TAA D ET+ R G DY+IKP + RL L Sbjct: 62 VDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNSYA 121 Query: 119 ---TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEP 174 RFR++ M +Q +ID + RG+ DE +P G++ +TL V + Sbjct: 122 TLYNRFRRQAQM-------NQAEIDSL--TLGRGQQVDEGVPKGLNEVTLKQVFLYLLKE 172 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 GV +AE VA+ + ++R TARRYL+Y ++ E+ +G VGRP Y Sbjct: 173 GVALSAEEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYR 222 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 128/218 (58%), Gaps = 3/218 (1%) Query: 9 IVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINL 68 I ED+ +A++H I+ + GF I A N + +++ K L+LLD Y+PD G L Sbjct: 6 IAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLKEHKADLLLLDIYMPDELGTAL 65 Query: 69 LHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 + + +++ +P D++ TAA++ + EA+R G+ YLIKP+ ++ Q L ++++++ + Sbjct: 66 IPD-IRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQYKEKRKL 124 Query: 128 LESIDSASQKQIDEMF-NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 L S SQ ID +F N P ++LPTGI+ +TL +++ + TAE + + Sbjct: 125 LMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEALQTASEGLTAEELGEK 184 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + SRTTARRY EY S+ AE+ +G +GRP+R Y+ Sbjct: 185 MGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYY 222 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ L++ED+ + + AE + PGFS + A +L QA +M+ +P L+L+D LPDG Sbjct: 3 PIFTLVIEDDERIGSILAELVSSTPGFSLLGRAESLTQADLMMRAAQPQLLLVDISLPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ ++ L + V+ TA+ D+ET+ +A+ GV DY+IKP+ R+ Q+L Sbjct: 63 SGLEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEILT 122 Query: 124 RKHMLESIDSASQKQIDE-MFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAE 181 + S Q +D M +G + P GID +TL V +L EP + + Sbjct: 123 LHRRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFSTD 182 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TVA L++SRTTARRYLEY S + ++ +G+ GRP+R YH Sbjct: 183 TVALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRYH 225 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 128/220 (58%), Gaps = 3/220 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L++ED+ +A++H ++ I GF+ I A +A ++ F P LILLD +LPD G+ Sbjct: 6 VLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWLQSFAPQLILLDVFLPDILGV 65 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 +L+ ++ + ++ TAA++ V +A R V DY++KP +++L +++ +FR + Sbjct: 66 DLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEKFRFKHL 125 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDE---LPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +L++ + +Q++I ++ A P+D LP GID T+N V TAE + Sbjct: 126 LLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKDGSTAELL 185 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + +SR+TARRYLE+ ++ E+ +G VGRP+R Y Sbjct: 186 GKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRY 225 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 125/216 (57%), Gaps = 3/216 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T+L++ED+ + E++ ++I + GF+ I A N + +I++ +P L ++D Y+P Sbjct: 6 WTVLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQD 65 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L ++ Y DV+ TAASD+ETV + ++ G DY++KP +ER+ Q L ++R Sbjct: 66 GLTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYRSF 125 Query: 125 KHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + +Q ++D M F + E D LP G++ +TL +++ E +AE V Sbjct: 126 QVKISQKEHITQSELDSMLFQQFE--EKADLLPKGLNAVTLRRIQQYLSEQNHPISAEEV 183 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 A + I+R TARRYLE+ + + + +G+VGRP Sbjct: 184 ADGVGIARVTARRYLEFLEQENELKLSVEYGRVGRP 219 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 17/237 (7%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TAP+T+L+V+D+ +A++HA Y+ IPGF+ A + AQA ++ +P L+L+D YLP Sbjct: 9 TAPVTVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLVAAIRPDLVLMDVYLP 68 Query: 62 DGRGINLLHELVQAHYPG------DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG 115 DG G+ ++ +L++A D + TAA D+ TV A++ G YL+KP Y + Sbjct: 69 DGDGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMA 128 Query: 116 QTLTRF---RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPT----GIDPLTLNAVR 168 + LT + R+R L + D A Q +DE+F RG+P LPT G TL VR Sbjct: 129 EKLTSYLDLRRRMQTLNTAD-ADQADVDELFG-LLRGQPA--LPTLPAKGHSAPTLELVR 184 Query: 169 KLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +A VA+ + ISR TA+RYL Y ++ ++ +G GRP+ Y + Sbjct: 185 SAVRAAPGDISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRYSA 241 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + E++ ++I +PGF + +A N A +++ P L+++D ++P Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLVKELTPDLVIIDIFMPIQD 67 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L EL A + DV+ TAA D T+ +R G DY+IKP +ER+ Q+L +R+ Sbjct: 68 GVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSLENYREF 127 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE-------PKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + ++ +ASQ ++D++ +R + ++ LP G+ +T+ + + ++ Sbjct: 128 RRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQIEKESQP 187 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A+ VA+ + I+R TARRYL+Y + ++ +G VGRP Y Sbjct: 188 LSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRY 233 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 117/217 (53%), Gaps = 3/217 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IVED+ + E++ +I+ + GF I + ++ ++ P L++LD YLPD G+ Sbjct: 5 VIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSPELLILDIYLPDIDGLT 64 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL E+ + + DV+ TAA E V+E +R GV DY+IKP ERL + L ++ + Sbjct: 65 LLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYKNKYLK 124 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 + S Q+ ID +F AR ELP G++ +TL + L +E A VA+ Sbjct: 125 IGRKRSVQQEDIDRLF---ARSSAGGELPKGLNDITLKKILSLLEETREPLAAAEVAKRA 181 Query: 188 TISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 ISR TARRYLEY L EI +G +GRP Y+ Sbjct: 182 GISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYYY 218 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +AE+H ++ PGF+ + +A A A + P L+LLD YLPD G+ Sbjct: 4 VLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAHPDLVLLDVYLPDMSGL 63 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++L L V+ TAA +++TVS A+ G DYL+KP Y +L + L FR+R Sbjct: 64 DVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENFRRRAR 123 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 LES A Q ID +F + LP G+ T V + + G + E A+ Sbjct: 124 ALESQSGADQSLIDSLFGGKGKNPEPSRLPKGLSAETGRLVLDILRSKGELSSTE-CAEL 182 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR + RRYLE+ S L+ + +G GRP R Y Sbjct: 183 AGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 116/222 (52%), Gaps = 8/222 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 AP+ LIVED+ +A++H + GF + A L AR M +P L+LLD +LPD Sbjct: 4 APIRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAMSRTLRPDLLLLDVHLPD 63 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GRG++LL EL D V TAASD +V A+ G DYL+KP ER L R R Sbjct: 64 GRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALERVR 123 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +R + D Q +D +F P + +G+D TL VR ++ G HTA+ Sbjct: 124 ERAALWAQRD-VRQGHLDALFT------PLADDASGLDAETLRRVRAALRD-GAAHTAQE 175 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 V QAL +SR TA RYLEY ++ + A VGRP + Y Sbjct: 176 VGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 6/218 (2%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IVED+ + ++++++++ I GFS NL++A+ + + + LILLD +LP+ GI+ Sbjct: 5 MIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQVDLILLDIFLPNENGID 64 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL L Q DV+ TA +E V +A R GV DYLIKP +ER ++L FR+R + Sbjct: 65 LLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIFRERLNS 124 Query: 128 LESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH-TAE 181 E+ + Q +D+ E K L G++ T N++ ++ T E Sbjct: 125 FENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKEEYFTTE 184 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +++ L I++ T R+YL+Y + + + I +GK+GRP Sbjct: 185 DLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRP 222 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-------RFKPG 52 MTA P +L+VEDE AE + ++ +PGF +AG+L AR + RF Sbjct: 1 MTARPYRVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFD 60 Query: 53 LILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 ++LLD LPDG G++ LH+L A + G V+ TAA+D+ V AV GV YL+KP ++ Sbjct: 61 VVLLDMNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFD 120 Query: 113 RLGQTLTRFRQRKHMLESIDSA--SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKL 170 L FR ML D A Q+Q+D +F +R + LP G+ TL V L Sbjct: 121 EFADRLGGFRAASAMLAG-DGALEGQEQVDAVFRV-SRERRAEALPKGLTEGTLREVMDL 178 Query: 171 F-KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +P +A V + L ISR TARRYLE+ + HG GRP++ Y Sbjct: 179 LGADPETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEY 232 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE---RFKPGLILLD 57 M + +LIVED+ +A +H ++I + GF ++AG ++ + +E R L++LD Sbjct: 1 MPEAIDVLIVEDDPMVAAIHRQFIGAVSGF---IVAGVVSSGKDALEFLQRHPVRLVILD 57 Query: 58 NYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 +LP G+ L ++ + + V+ +A+ D T++ ++ G FDY+IKP +ER+ + Sbjct: 58 VFLPGMDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTS 117 Query: 118 LTRFRQRKHMLE-SIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 L F+Q ++ L D QK++D + + ++LP G++P TL V+ L Sbjct: 118 LRSFQQLENRLNRGADQIDQKELDRLLQVQQKETSTNDLPKGLNPQTLQQVKNLLGHAAS 177 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 ++ AQAL ISR TARRYLEY + E+ + KVGRP Y Sbjct: 178 PLSSVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRY 224 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIVED+ +A+++ Y+ + GF + +A + +A I LI+LD ++ Sbjct: 2 ISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFINHNNVDLIILDIHMAKVD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L E+ + DV+F TAA + ET+ E ++ G DYLIKP YER+ L + +R Sbjct: 62 GLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENYERR 121 Query: 125 KHMLESIDSASQKQIDEMF--NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAE 181 H+L Q+ ID++ N P LP G+ TL VR+ ++ + T++ Sbjct: 122 YHLLRKEHVIKQEDIDKITTKNPTHNQRP---LPKGLHEKTLKKVRRYMQDHKDELLTSD 178 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA L SR T RRYLEY S + EI +G +GRP Y Sbjct: 179 EVAAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKY 220 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + + IVED+ + E++ ++ + GF + A ++ +A++ I + K L+LLD +LPDG Sbjct: 3 KIKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEAKIKITKEKADLVLLDIFLPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 +GI+LL + D + TA +V EA + G DYLIKP +ER + L+ +R Sbjct: 63 KGIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYRN 122 Query: 124 RKHMLESIDSASQKQIDEM---FNAYARGEP--KDELPTGIDPLTLNA-VRKLFKEPGVQ 177 R L +ID+ +Q ID+ NA E + EL G+ T N + + ++ G Sbjct: 123 RFVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQD 182 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE +A+ ++R TARRYLE + +GK+GRP Y Sbjct: 183 LTAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYY 228 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 115/224 (51%), Gaps = 15/224 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 + P LIVED+ +A +H ++ G +AG L +A +E P L+LLD YL Sbjct: 5 LVKPAQALIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREAWAFLEE-NPDLVLLDLYL 62 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ LL L + V TAA D+ TV A+ G DYL+KP RL + L R Sbjct: 63 PDGHGLELLPALEGVY----TVVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALAR 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 FR ++ L++ SQ +D + + + P G+DPLTL V L + G TA Sbjct: 119 FRAFQN-LKAKKEVSQADVDRLLG-------RRQAPKGLDPLTLGRVLALL-QGGKPLTA 169 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E VA+AL +SR TA RYLE + AE +G GRP R Y Sbjct: 170 EEVAEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYR 213 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T + +LIVED+ A ++ + I+ F+ + A + +++ P L+LLD LP Sbjct: 3 TPSIGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLLQVITPDLVLLDVQLP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 D GI+LL + Q + DV+ TA++D +TV EA R G F Y++KPI +R QTL + Sbjct: 63 DANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEY 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDE--------LPTGIDPLTLNAVRKLFKE 173 + + + + +++ I +F+ G+P LP GID TL V + Sbjct: 123 KAARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVH 182 Query: 174 PGVQHT--AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + AE V + + S +TARRYLEY S + ++V+G VGRP+R Y Sbjct: 183 ITESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRY 234 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 3/222 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + + +LIVED+ + ++H ++ IPGF + L N ++E+ L++LD Y+P+ Sbjct: 2 SDIRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVLEQRSVDLVILDIYMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LHE+ + DV+ +AA + +TV + +R G FDY++KP YER + + + Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +D Q ID + AR + LP G+ + L+ VR + E +A+ Sbjct: 122 LYWAQKGDLD---QGAIDRIMRRGAREKRDRCLPKGLGSVQLDRVRSILMEEEGALSADE 178 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 VA +SR TARRYLEY S + E +H VGRP +Y Sbjct: 179 VAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYR 220 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 113/218 (51%), Gaps = 10/218 (4%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 LIVED+ +A +H + F + A L AR+M E P L+LLD YLPDGRG++ Sbjct: 7 LIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVARVMAETLCPDLLLLDVYLPDGRGLD 66 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL EL D V TAASD+ +V EA+ G DYL+KP ER L R R+R + Sbjct: 67 LLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDRVRERSAL 126 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELP-TGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 + ++ Q +D +F + LP +G+DP TL+ VR + G ++A + Q Sbjct: 127 WQQ-EAVRQGHLDALFA-------RPPLPASGLDPETLHRVRATLRS-GRAYSARELGQT 177 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 L +SR TA RYLE+ A +GRP + Y Sbjct: 178 LGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 126/221 (57%), Gaps = 11/221 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE++ Y+ + GF A ++ +A ++E+ LILLD Y+P Sbjct: 2 INVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLLEKEDIQLILLDIYMPGRL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ L + DV+ +AA DM+ + +A+R GV DYLIKP +ER LT + Q+ Sbjct: 62 GLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAYEQQ 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLN----AVRKLFKEPGVQH 178 E + +Q+++D + R EP +ELP G+ TL AV++L + P Sbjct: 122 SRFAEKREEVTQQELDS--HLLRREEPSVVEELPKGLTKDTLKQVWEAVQELKEGP---F 176 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 + + +A+A+ +SR +AR+YL + ++ ++++G +GRP Sbjct: 177 STDEMAEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRP 217 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ +A++H Y+ + GF + + N +A + + L++LD +LP Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALDFLRKRPVRLVILDIFLPGLD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + ++ DV+ +A+ D TV++ ++ G FDY++KP A++R+ L FRQ Sbjct: 64 GLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFRQV 123 Query: 125 KHML-ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 H L E + Q+ ID + A + + LP G++P L V L + ++ Sbjct: 124 VHRLTEGPNQVDQQDIDNLLLARNKKNIQTVLPKGLNPNVLEKVEALLTKVDKPLSSVET 183 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+A+ +SR TARRYLEY + + E + +VGRP Y Sbjct: 184 AEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYE 224 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 1/220 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M ++++I+ED+ + E+H +Y+ + GF+ A + + +I + +P L ++D Y+ Sbjct: 1 METSISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNIIAKLQPHLAIVDIYM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+++L + + + DV+ TAA D ++V + ++ G DY+IKP + R + L Sbjct: 61 PGISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALET 120 Query: 121 FRQRKHMLESIDS-ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 +R+ L + + SQK ID + N K LP G+ TL+ + +L ++ T Sbjct: 121 YRRYFCKLRTKEQLISQKDIDMLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGYFT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 + +A AL ISR T +RYL Y ++ + +G VGRP Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRP 220 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 5/219 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +A +H EY + + ++ AR + LI+LDNYL DG+ Sbjct: 1 MRVLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANNDVDLIVLDNYLIDGQ 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L EL YP ++ TAA+D++TV A+ GV DYL+KP YER Q + + + Sbjct: 61 GIEYLPEL--KGYP--IIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQDY 116 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +L S + +Q IDE N+ E +D LP G+ +TL V + K+ T + +A Sbjct: 117 VKLL-SKEKINQDLIDEYLNSGRIEEDEDNLPKGLSRITLKKVLEAIKQHNSGFTTQQIA 175 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L ISR T R+YL + + +++ + + GRP ++ Sbjct: 176 DKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVF 214 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 3/218 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ +A+++ Y+ + N A IE +P LI+LD Y+P Sbjct: 2 IKTIIVEDDPMVAQINRRYLDTANDIQVAAVFDNGKDALAYIEDEEPDLIILDVYMPVMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ +A DV+ TAA+D++ V EA+R G+ DYL+KP YER + + ++R++ Sbjct: 62 GLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEKYRKK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYA--RGEPKDELPTGIDPLTLNAVRK-LFKEPGVQHTAE 181 H+L+ + +Q ID + + A P +L G+ TL+ +R L K G T + Sbjct: 122 AHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGETCTCD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 T+A + +S+ T RRYL Y A I + + + GRP Sbjct: 182 TLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRP 219 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ + GF + A A A + +P L+LLD YLPD Sbjct: 2 IKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAVGELRPELVLLDIYLPDMD 61 Query: 65 GINLLHEL----VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ +L EL + DV+ TAA D++TV A+R G YLIKP +YE L L Sbjct: 62 GLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQLEN 121 Query: 121 FRQRKHMLESIDS---ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE---P 174 FR L ++ A+Q+ +D +F + ARG P G+ T V + +E Sbjct: 122 FRSLHRSLSAMPGDAPAAQQDVDRLFGSRARGSSAP--PKGVSSETARIVEDILRERSAE 179 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 G +A A A +SR +AR+YLE+ + +G GRP+R Y Sbjct: 180 GGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYR 229 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 123/217 (56%), Gaps = 3/217 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + QA M++ L+LLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDMLKTEAIHLVLLDIYMPGQN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + ++ DV+ +AA++++ V + +R G DYLIKP +ER L+ ++++ Sbjct: 62 GLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEYKRK 121 Query: 125 KHMLESIDSASQKQID-EMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAET 182 + ++++S SQ +D ++F+ A E K LP G+ TL + + G Q T E Sbjct: 122 HALYQTMNSISQNDLDAKLFHKKAETE-KVLLPKGLTKSTLKLIWTSIQSFGHQAFTTED 180 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +A IS+ + R+YL++ ++ E+ +G +GRP Sbjct: 181 LANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRP 217 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 5/217 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED+ +A ++ + + P + A LAQA +++ P LILLD +LPDG G+ Sbjct: 6 VLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQADALLQALAPDLILLDVHLPDGSGL 65 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 NLL DV TAA D +V A+ G FDYLIKP RL + + R R R+ Sbjct: 66 NLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVARHRARRV 125 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 ++D Q +D + G + LP GIDP TL V ++ + G +AE V Sbjct: 126 PRGTLD---QSHLDRLLGVS--GGIPEPLPRGIDPHTLERVAQVLEGAGGALSAEEVGDR 180 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +SR TA RYLE+ + +G GRP ++Y Sbjct: 181 AHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLY 217 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM-MIERFKPGLILLDNYLPDGRG 65 +LIVED+ +A ++ ++ ++ GF IL + + ++++ LILLD YLP G Sbjct: 5 ILIVEDDPMVALINKRFLENM-GFKDILGPVQTEEEIIQLLDKENIDLILLDVYLPKKNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I++L L Y DV+ TAA+ +E V A GV DYL+KP +ER + + +++Q+ Sbjct: 64 IDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQKN 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETVA 184 ++L ++ SQ+ ID + + E K ELP G++ TL+ + + KE G T +A Sbjct: 124 NLLNKREALSQQDIDVISKSL---EEKIELPKGLNQKTLDRIMEFLKENKGKVWTLREIA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 L IS T ++Y++Y + + G VGRP+ Y G Sbjct: 181 YELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKYTLG 222 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 2/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP-GLILLDNYLPDG 63 + +LIVED+ +A + Y+R +PGF AG + +A+ + K L+LLD Y+P Sbjct: 2 IQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKTIQLVLLDVYMPGE 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L + DV+ TAASD E++ A+R G DY++KP + R + L ++ Sbjct: 62 NGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAYQS 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH-TAET 182 R + ++ QKQ+DE F K LP G+ TL V + ++ G + E Sbjct: 122 RYNFFRKEETTDQKQLDETFFEKKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFSTED 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A +SR + ++YL + ++ + +G +GRP IY Sbjct: 182 IALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIY 222 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 115/218 (52%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L++ED+ + E++ ++ + GF+ + + + +P LILLD ++P G+ Sbjct: 9 VLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEGMVKTRELQPDLILLDIFMPKQDGL 68 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 + + ++ + + D++ TAA+D +T+ +R GV DYL+KP +ERL LT++ + Sbjct: 69 SFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYEEMFR 128 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 ++ SQ +DEM D+LP G+ TL V + +E +AE + + Sbjct: 129 KMQKEAELSQDSLDEMIKQKQAQANMDDLPKGLHAHTLQQVIERLEELDEPKSAEEIGRD 188 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ++R T RRYL Y S + ++ +G +GRP + Y Sbjct: 189 VGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYK 226 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQI--LLAGNLAQARMMIERFKPGLILLDN 58 MT +LI+ED+ +A++ + + P F I G A + + LILLD Sbjct: 1 MTKLYKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDV 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 Y+PD +G+ LL + + D++ TAA +++TV EA+R G+ DYL+KP+ E L Q L Sbjct: 61 YIPDVKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRL 120 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEPGVQ 177 + Q++ + SQ+++D++ R + + LP GID LTL V +E Q Sbjct: 121 DAYVQKRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQ 180 Query: 178 H-TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TA A+ + SR+T RRY EY AE+ +G VGRP+R Y Sbjct: 181 GLTAMEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRY 227 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 118/218 (54%), Gaps = 2/218 (0%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ + +H Y+ + F +I + +A+ M+++ L+LLD +L DG G Sbjct: 4 NILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEMLQKETIELLLLDIHLKDGNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + LL L + DV+ TAA + +S+++ G+ DYLIKP ++ER Q++ F+QR+ Sbjct: 64 LELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQQRR 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 L+ +Q+QID + + P EL G+ TL +++ + T + +AQ Sbjct: 124 ESLKH-PRIAQQQIDLLLQGNQKS-PWIELEKGLTEDTLQLIQETIRTIKQPFTVQELAQ 181 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A +S + R+Y+ + I +E V+ K+GRP + Y Sbjct: 182 ACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQY 219 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 3/223 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 A +L+V+D+ +A +H +++ GF +A A + P L+LLD +LPD Sbjct: 6 AEFGVLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKLAELSPDLMLLDVHLPD 65 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L Q H DV+ TA D++ V EA + G YL+KP Y L + L FR Sbjct: 66 MSGLEVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKLAHFR 125 Query: 123 QRKHMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + +L++ + Q ID++F + P+ +LP G+ T + VR+ E Sbjct: 126 KARALLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLSADEALSATE 184 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ + ISR +ARRYLEY + + +GK GRP+R+Y Sbjct: 185 -CAERVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYR 226 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 113/215 (52%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +AE++ ++ + GF+ + + + A A + + LI+LDNYLP+ Sbjct: 4 IRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVKDGAAALAFVAQKSVDLIILDNYLPEKT 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L EL + P DV+ TAA D +TVS +R GV Y+ KP +ER L +R Sbjct: 64 GVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYRSF 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +Q+ IDEMF+ R D++P T+N + +AE +A Sbjct: 124 REKTLKKTNLAQEDIDEMFSVRQRSAGPDDIPKNFSQQTMNLIIDFLANQTAPLSAEEIA 183 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 + ISR TARRYLEY + + + VGRP Sbjct: 184 AGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRP 218 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP--GLILLDNYLPD 62 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 62 ENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGE--PKDELPTGIDPLTLNAVRKLFK-EPGVQHT 179 Q+K LE Q ++D++ + + E P+ LP G+ P TL + + + + Sbjct: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPR-RLPKGLTPQTLRTLCQWIDAHQDYEFS 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 + +A + ISR + R+YL + + H++ I +G GRP Sbjct: 181 TDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRP 220 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 14/225 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +L+++D+ +A +HA + PGFS + A LA+A+ +I F P L+L+D YL Sbjct: 1 MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ D +AA D++TV A+R G YL+KP +RL + L R Sbjct: 61 PDGDGIDLV-----GTSNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARG--EPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + +H+L SQ +ID+ A G P + + L L+A+ G + Sbjct: 116 YVRYRHVLSGTQGLSQDKIDQA-TAILNGTQAPVTVSRSATEQLLLDALE------GQEL 168 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A ++A +SR TA+R L AS+ +I + +G+ GRP+ +Y Sbjct: 169 SATEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLY 213 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 11/207 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + E++ ++I I GFS + A N + I++ P L+ +D ++P+ Sbjct: 4 INVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKIKQLTPELVFIDIFMPEQD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L ++ + H P DV+ TAA+DM TV + GV+DY++KP +ER+ QTL +R Sbjct: 64 GIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQTLKNYRSY 123 Query: 125 KHMLESIDSASQKQIDEMF-----------NAYARGEPKDELPTGIDPLTLNAVRKLFKE 173 + + + +Q +D + A +ELP G + TL+ V + Sbjct: 124 RKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDKVFAYIQT 183 Query: 174 PGVQHTAETVAQALTISRTTARRYLEY 200 G +AE V+ + +R TARRYL++ Sbjct: 184 SGGAVSAEEVSTYIGTARVTARRYLDF 210 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 4/219 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI+ED+ +AE + Y+ I F + AQA ++ P LILLD +LP+G G Sbjct: 6 VLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETLKTNMPDLILLDVFLPNGNG 65 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 ++LL + ++ DV+ TAA D TV EA+R G D+LIKP ++R Q L + K Sbjct: 66 MHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNYVHLK 125 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRK-LFKEPGVQHTAETVA 184 ++++ +Q +D F+ LP G+ LTL + L+ P + E +A Sbjct: 126 KVIDTEQEINQADLDSRFDFLEIDYTTSSLPKGVHLLTLKLITDYLYDHPNPKSCHE-IA 184 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L++SR TA +YLE+ + + + + KVGRP ++Y Sbjct: 185 ADLSMSRITAWKYLEHLVKQGQVTVSLEY-KVGRPTKLY 222 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 9 IVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINL 68 +V+D+ +A++HAE+ +P F + +A + QAR +++ P L+LLDNYLPD GI L Sbjct: 6 VVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELVDTRNPDLVLLDNYLPDRSGIAL 65 Query: 69 LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-RQRKHM 127 L EL D + TAA+D +V A+ G +YL+KP E+LG LT + R R + Sbjct: 66 LAEL-----DVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAYARYRGRL 120 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 + + Q +ID G+ + P G PLT V + +A +A+ L Sbjct: 121 PVTGGAVDQDEIDRAMRLLHEGD-RPAAPKGQSPLTSQLVLDALQRGESARSAAEIAEEL 179 Query: 188 TISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 I+R TA+RYL A + +G GRP+ Y Sbjct: 180 GIARATAQRYLAALAQDGKARMTLRYGASGRPEHQYE 216 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIVED+ + +H Y+ I F I + +A A+ ++ L+LLD L DG GI Sbjct: 4 ILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLLASRSIQLVLLDIRLKDGNGI 63 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 + L +L + DV+ TAA+++ V++A+ GV DYLIKP ER +++ R+R KH Sbjct: 64 DFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRYRT-KH 122 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 D +Q Q+D F P +L G+ TL ++ K+ T + Sbjct: 123 QALVTDQLNQSQLDTYFEPQTTIPPTVDLDKGLSKATLQLIQGAIKQLPQPFTVAQLTTE 182 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +S + R+YL + H + + ++ K GRP + Y Sbjct: 183 TGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQ 220 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 1/217 (0%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 LIVED+ +A ++ Y+ + F + + N +A I K L+LLD Y+ G+ Sbjct: 6 LIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKIRMKKIELLLLDVYMAKMNGLE 65 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL + + + DV+ TAA E + E R GV D ++KP ++R ++L + +R +M Sbjct: 66 LLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYYKRYNM 125 Query: 128 LESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 + + +Q ID + N + + LP GID +TLN +RK+ KE T + + + Sbjct: 126 FNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVLKEAPCPLTIQELEKH 185 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + IS+ T R+YLE+ A + I ++ + GRP ++Y Sbjct: 186 VQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLY 222 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 117/217 (53%), Gaps = 3/217 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + A ++ LILLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHILGEHHIDLILLDIYMPGKN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL EL + DV+ +AAS+++ + + +R G DYLIKP +ER L+ +R++ Sbjct: 62 GLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDYRRK 121 Query: 125 KHMLESIDSASQKQID-EMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAET 182 + + + + SQK++D E+F E K +LP G+ TL + + T E Sbjct: 122 QKVYSTHRNMSQKELDAELFQKKEATE-KVQLPKGLTKSTLKLIWSSIQSFENESFTTED 180 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +A+ IS+ + R+YL++ ++ E+ +G +GRP Sbjct: 181 LAKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRP 217 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 14/226 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +TLLIV+D+ + + I GF + +A +A RF P L+LLD +LPD Sbjct: 8 ITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREALAATRRFAPNLVLLDLHLPDIP 67 Query: 65 GINLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+++ H+L + YP DV+ + + + V A++ G YLIKP + QTL R+ Sbjct: 68 GLDVAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTLLRYAA 127 Query: 124 -RKHMLESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 H+ Q+ ID +F +A R PTGI P T V G Sbjct: 128 ASAHLSAGASMVEQRAIDRVFRSLHLDAVVR-------PTGISPATEQVVLDALAAAGRD 180 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A A+A+ ISR TARRYLE+ A R ++A + +G GRPQ Y Sbjct: 181 LSAHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRY 226 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +L+VED+ AE H Y+ +PGF+ + +AG A+A ++ + L+LLD LPDG Sbjct: 5 LRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVLSHGQIDLVLLDMNLPDGH 64 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-RQ 123 G++++ + A DVV T+A ++ V A R GV Y++KP A+E L L+ + RQ Sbjct: 65 GLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSAYARQ 124 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHTAET 182 R+ A Q ++D + + +P G+ L+ V +L G TAE Sbjct: 125 RRAAESGQVVADQDEVDRLLHP----ATVSSVPKGLAGSVLDRVVQLLGNREG--WTAEE 178 Query: 183 VAQALTISRTTARRYLEYCASR-HLIIAEIVHGKVGRPQRIY 223 VA +L SR TARRYLE+ A + + + G+ GRP+ Y Sbjct: 179 VATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEY 220 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 114/211 (54%), Gaps = 5/211 (2%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHEL-VQ 74 +A + +Y+ I GF LA +A+ ++E L+LLD Y+P G+ LL + + Sbjct: 2 VASFNKQYVEEIKGFQLAGLAKCFDEAKQLLEENDIQLLLLDIYMPGKNGLELLQYIRKE 61 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 Y DV+ TAA D++++ A+R G DY+IKP +ER + LT +R++ +L++ S Sbjct: 62 TAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQQSL 121 Query: 135 SQKQIDEMFNAYARGEPKD-ELPTGIDPLTLNAV-RKLFKEPGVQHTAETVAQALTISRT 192 Q+++D + + E K+ LP G+ P TL + + + T + +A+ + ISR Sbjct: 122 KQEELDA--SILHQQEKKNMTLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQISRV 179 Query: 193 TARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + R+Y++Y + + +G +GRP +Y Sbjct: 180 SVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 106/208 (50%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A ++A Y+ +PGF A + A+A ++ LILLD+YLPD G++L+ L + Sbjct: 3 VARINAAYVEKVPGFEVAARAHSAAEALELLSDRPVDLILLDHYLPDENGLDLVRHLRRR 62 Query: 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSAS 135 DV+ TAA D+ TV A+R G YL+KP + L L + +H LES A Sbjct: 63 GDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGGEAE 122 Query: 136 QKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTAR 195 Q ++D +F A + LP G P T VR++ + + + +A ISR TA+ Sbjct: 123 QAEVDRIFGTLASAGTPNALPKGHSPTTAELVRQVLRSADGPLSTQQIADLAGISRQTAQ 182 Query: 196 RYLEYCASRHLIIAEIVHGKVGRPQRIY 223 RYL+ + + +G+ GRP+ Y Sbjct: 183 RYLKLLDRTGRVTLALRYGETGRPEHRY 210 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 8/214 (3%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A++H+ Y+ + GF+ + +A N A A ER +P L+LLD YLPD GI +L L A Sbjct: 2 VAKLHSRYVSAMDGFAVVGVAHNGADALRAAERLRPDLVLLDIYLPDMDGIGVLRALRAA 61 Query: 76 HY------PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLE 129 D +F TAA D + A+R G YLIKP + L + + + L+ Sbjct: 62 EERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRTRLD 121 Query: 130 SIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTI 189 + A Q+ +D++F G ELP G+ T + V ++ + +A A+ + Sbjct: 122 RLGEARQEDVDQIFGTRPPG--SRELPKGLAAPTADLVERVLRSHPDGLSASECAEVGAL 179 Query: 190 SRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 SR +ARRYLE+ A + +G GRP+R Y Sbjct: 180 SRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRY 213 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ PGF+ I A + A M +P LILLD YLPD Sbjct: 2 IRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAALRMARDERPDLILLDIYLPDID 61 Query: 65 GINLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L EL A DVV TAA D++T+ ++ G YLIKP +Y L L Sbjct: 62 GLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLDHVS 121 Query: 123 QRKHMLESID---SASQKQIDEMFNAYARGEPKD--ELPTGIDPLTLNAVRKLFKEPGVQ 177 LE + +A+Q ++D++F+ G P+ LP G+ T VR E Sbjct: 122 SLHRKLERLSARPAAAQHEVDDVFS----GRPRRTASLPKGLTEQTAALVRTALTEHPEG 177 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A A +SR + RRYLE+ A + +G GRP+R YH Sbjct: 178 LSATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRYH 224 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 111/222 (50%), Gaps = 8/222 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE A H Y+ I GF +A + +A + + L+LLD +LPDG Sbjct: 2 IRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERALAKGGIDLVLLDLHLPDGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++L + A DV+ ++A D + V AV G YL+KP A+ L LT +R+ Sbjct: 62 GLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSYREF 121 Query: 125 KHML---ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + E +D AS + M A G LP G+ TL V +E G +A Sbjct: 122 AEQVAGAEDVDQASVVRALGMLRAPNTG----SLPKGMTKETLAIVVGALRELG-DASAT 176 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + L +SR TARRYLE+ A ++ + +G+VGRP+ Y Sbjct: 177 QIGDFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRY 218 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 11/226 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI+ED+ +AE++ ++ IP + I N+ + + + L+LLD Y+P G Sbjct: 4 NVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKKYFRQKNADLLLLDVYMPGESG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I+ L L Q V+ TAA D+ET+ +R G DYLIKP +R + ++ Sbjct: 64 IHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEKYLAFS 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDE------LPTGIDPLTLNAVR-KLFKEPGVQH 178 +++ + A QK ID++FN P E LP G+ LTL + + KE + Sbjct: 124 QTIQTTEKADQKLIDQVFN---HTTPIHETPSFIDLPKGLSKLTLKKISASILKEETIFS 180 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T E +AQ +SR + ++YL + + ++ I + ++GRP Y Sbjct: 181 TKE-LAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYE 225 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 111/219 (50%), Gaps = 4/219 (1%) Query: 8 LIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +I+ED+ P A E I H P F ++++ A M + +KP L+ +D LPDG GI Sbjct: 1 MIIEDD-PKASYALESIIHQHPDFEVVVVSETYQDALMHYDLYKPQLVFVDITLPDGSGI 59 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 N++ +L + TTA + TV + V+ GV DYL+KP+ R+ Q L ++ + Sbjct: 60 NVIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYRQ 119 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHTAETVAQ 185 L ++ Q ID + P P GID TL+ ++ + KE + + + ++ Sbjct: 120 KLACHETMDQCVIDHILGKRT-NLPMRRTPKGIDANTLDTLKDILRKEQLTEFSGDDISD 178 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +SR T RRYLEY S +I + + GRP R+Y Sbjct: 179 RMNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQ 217 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 3/218 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A ++ Y+ GF + ++ A ++E + L+LLD ++P+ Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEASRVDLVLLDIFMPEET 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL + D++ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 62 GFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYREK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLNAV-RKLFKEPGVQHTAE 181 ++ SQ ++D + + EP ELP G+ T+ + +K+ G T + Sbjct: 122 LTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAFTTD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +AQ + +SR + R+Y+ + ++ E+V+ VGRP Sbjct: 182 EMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRP 219 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 6/229 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPG-----LILL 56 T P+++LIVED+ +AE H Y+ + GF+ +A A G L+LL Sbjct: 3 TRPISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLL 62 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D LPD GI+L L D++ T+ D+E V AV G YL+KP + Sbjct: 63 DLGLPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRD 122 Query: 117 TLTRFRQRKHMLES-IDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG 175 L R+R+ + L + ID+ASQ ++D + P G P T + + + ++ Sbjct: 123 RLERYRRYRDALPAGIDAASQTEVDRALAELRGSADRATAPKGTAPGTNDEIARAVRDSA 182 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA+ VA + +SR TA RYLE A + +G+ GRP+ Y Sbjct: 183 DGLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRYQ 231 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 8/220 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP--GLILLDNYLPDG 63 +LIV+D+ +A++ + P F +A +L QA+ +I K LILLD Y+ Sbjct: 3 NVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYINKD 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L H DV+ +AA D T+ +++ GV DYLIKP RL +LTR++ Sbjct: 63 NGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRWKH 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYA-RGEPKDELPTGIDPLTLNAVRKLFKEPGVQH---T 179 +K +LES +Q ++D + + E LP G+ TL + + E QH T Sbjct: 123 KKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEH--QHKKFT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +A + ISR + R+Y+ + S H++ + G GRP Sbjct: 181 LNELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRP 220 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 3/215 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IVED+ +A ++ Y+ + GF + +A ++ +A +++ ILLD ++P G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEILKESSIDFILLDIFMPVDTGFE 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL + DV+ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 61 LLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKFIF 120 Query: 128 LESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFKE-PGVQHTAETVA 184 ++ SQ ++D + + E ELP G+ TL + K + G T + +A Sbjct: 121 MKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDEMA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 Q + ISR + R+Y+ + ++ E+V+ VGRP Sbjct: 181 QLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRP 215 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 13/224 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE--RFKPG-LILLDNYLPD 62 T++IVED+ + E++ Y F+ +A +Q R ++ R P L++LD Y+P Sbjct: 3 TVVIVEDDPMITELNRRYAEKDGRFT---VAQTFSQPRRALDWLRHNPADLVILDFYMPQ 59 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF- 121 G+ L + A DV+ TAA+D TV R GV DYL+KP AYER + L F Sbjct: 60 MNGLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAFC 119 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTA 180 R+R M S+D Q +D + +A LP G+ T V + +PG +T Sbjct: 120 RRRSAMRGSLD---QTALDNLLHAVPPAPAT--LPKGMQAQTQERVLACMRDDPGHAYTC 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E +A A +S T RRY+ Y A + + ++ +G GRP +Y Sbjct: 175 EEIAAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYR 218 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 14/226 (6%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPG----LILLDNY 59 P LLI ED+ + ++ +++ + G S L G ++ F+ G L+LLD Y Sbjct: 3 PYGLLIAEDDPSMVRLYKAFLQGVEGVS---LLGVTPSGEELLRYFRRGGRAELLLLDIY 59 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 L G+++L EL DV+ T+ S TV EA+R GVFDYL+KP R G+ L Sbjct: 60 LEGSNGVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALD 119 Query: 120 RFRQRKHMLESIDS-ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + ++ ++S SQ ++D++ G ++ELP G+ TL + L G + Sbjct: 120 DLVAFRRRIDRVNSRMSQDELDKLL-----GGGEEELPKGLHRSTLKGILSLLSCFG-EA 173 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T + +++ + +S+++ RRY++Y + + H GRP +Y Sbjct: 174 TVDRLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYR 219 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +++IVED+ +A ++ +Y+ P FS QI +G A + R + LI+LD Y+P Sbjct: 3 SVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQ--DALSWLSREEVDLIILDYYMPLM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G + L V+ T+A D V E + GV DYL+KP R Q L+RF Q Sbjct: 61 TGQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRFAQ 120 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFKE-PGVQHTA 180 + L+ +Q +ID + + P + EL G+ TL +R K PG ++ Sbjct: 121 TRSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELFSS 180 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 E +A+ + +SR T RRY+ Y I++ + + GRP Y Sbjct: 181 EQIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 23/234 (9%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + +H Y+ I F IL + +++ A+ + +F LILLD ++ DG Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLVQFSIQLILLDIHIKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF--- 121 G+NLL + H +V+ +AA+D + G+ DYLIKP ++R +++ RF Sbjct: 61 GLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFFDH 120 Query: 122 -RQRKHM---------LESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKL 170 +Q M L+S S ++ I N +G +D L ++A+++L Sbjct: 121 QKQLNQMVIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTY-----QLIIDAIQRL 175 Query: 171 FKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 K +Q E +S + R+Y+ Y + +++E ++ KVGRP ++Y Sbjct: 176 SKPFTIQDLTEETC----LSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQ 225 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ LIV+ + LAE + IPGF+ + + + A+A + R P L+LLD LPD Sbjct: 5 PIRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALEFVSRGHPQLVLLDLLLPDT 64 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + L D++ T+ASD+ TV A+ GV YL+KP++ L L RF Sbjct: 65 TGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFAA 124 Query: 124 RKHMLESIDS--ASQKQIDEMFNAYARG-EPKDELPTGIDPLTLNA-VRKLFKEPGVQHT 179 L + SQ ++D A P + P G+ TL++ V +L G + Sbjct: 125 AHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPAS 184 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 AE +A A+ +SR TARRYLE+ A L I +G+ GRP +Y Sbjct: 185 AEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLY 228 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 11/222 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L++L+V+D+ +A MHA + +PGF+ A +A AR E L L+D YLPDG Sbjct: 6 LSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAAR---EAPAVDLALVDVYLPDGS 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ + EL D + TAA++ ETV A+ G YL+KP L L+ + + Sbjct: 63 GIDFVRELRS-----DSMILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYARY 117 Query: 125 KHMLESIDSASQKQIDEMFNAY-ARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +L + S + +D +A R P T P T V + K +A V Sbjct: 118 RKILAGAN-LSARDVDAALDALRPRLAPAQSSATAASP-TKQLVLQALKTSQTPMSAAEV 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A A+ ISR TA+RYL AS + + +G GRP++ + + Sbjct: 176 AAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRPEQEFAA 217 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 102 bits (255), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 14/225 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ L +L+V+D+ +A++HA + PGF+ + A +A+AR+ + L+L D YL Sbjct: 1 MSRTLQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEARVFLAEHPVDLLLADIYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L D +AA D+ TV A+R G YL+KP L L R Sbjct: 61 PDGDGITLARA-----SDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP--GVQH 178 + + +H+L SQ+++D+ A G + PT P++ +A +L + + Sbjct: 116 YARYRHVLSGSQGLSQEKVDQAL-AILNGA---QAPT---PVSRSATEQLLLDALGDGEL 168 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A A+ +SR TA+R L AS L+ + +G+ GRP+ +Y Sbjct: 169 SASEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 5/226 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TA + + ++ED+ +A H ++ + GF I A L Q +I+ KP L+LLD ++ Sbjct: 14 TAVIKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLIQTQKPDLLLLDVFVG 73 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+++L + DV+ T+A+D +TV R GV DYLIKP ++ R + L R+ Sbjct: 74 QENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRY 133 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKD-ELPTGIDPLTLNAVRKLFKEPGVQHTA 180 R + L++ S +Q+ +D + + G+ K LP GI T V E A Sbjct: 134 RASQ--LDANASFTQQDVDRLL--HKGGQRKVYALPKGIAKETAIRVLSCLIEADDSLAA 189 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 + IS + R+Y+ + L+ E+V+ GRP + Y + Sbjct: 190 AELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKAS 235 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLI+ED+ +A +H +Y+ + I +A+ ++ + +P L+LLD +L DG Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEGLLLTKEKQPALVLLDVHLKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + +V+ TAA+++E V ++ GV DYL+KP ++ER Q++ ++++ Sbjct: 61 GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK 120 Query: 125 --KHMLESIDSASQKQIDEMFNAYARGEPKDE-------LPTGIDPLTLNAVRKLFKEPG 175 + LE+ SQ ++D++F+ K+E L G+ TL + K E Sbjct: 121 TAQFTLET-KELSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDEFT 179 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 T + +++A +S + R+Y+ + +L+ ++ + KVGRP + Y Sbjct: 180 DYFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSY 227 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKP---GLILLDNY 59 + +LIV+DE +A+ H Y+ +P F ++ +GN A + L+LLD Sbjct: 2 IRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDIG 61 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPD G+++ L D++ T+A D+E V AV G+ YL+KP + L Sbjct: 62 LPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKLE 121 Query: 120 RFRQRKHMLESIDSA-SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 R+ + + L + +SA SQ ID +A + + P G TL V ++ Sbjct: 122 RYLEYRAALPAGESAVSQHDIDRAMSALRTSDDRAAAPKGFASQTLGLVAASVRDSEGPV 181 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA VA ++ +SR TA RYLE A ++ E +G+ GRPQ Y Sbjct: 182 TAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 110/209 (52%), Gaps = 6/209 (2%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A+ +A ++ IP F + +A + + + LILLD Y+ + G++LL EL + Sbjct: 2 VAKFNAIFVERIPEFKLVGVARGIEEGWTYLNEEAVDLILLDVYMTNENGLDLLMELRRE 61 Query: 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSAS 135 ++P DV+ ++A+D ++ A+R G DYLIKP ++R L R++Q ++ ++ Sbjct: 62 NHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQDMKK-EAIQ 120 Query: 136 QKQIDEMF---NAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTIS 190 Q+++D +F + PK + LP GI T V + + + + A IS Sbjct: 121 QEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDWFSTNDLVDATGIS 180 Query: 191 RTTARRYLEYCASRHLIIAEIVHGKVGRP 219 R + R+YL+Y + +++ ++ + + GRP Sbjct: 181 RVSLRKYLQYLTNSDILLFDVDYQRTGRP 209 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 3/219 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ A+ H Y+ + GF+ +A A A +ER L+LLD YLPDG Sbjct: 2 IRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHTRAAAVRALERTPVDLLLLDLYLPDGH 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL L + + DV+ T+A D+ V E V GV Y++KP Y L L R+ + Sbjct: 62 GLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFTYPTLRDRLVRYAEF 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +++ Q+++D A P LP G+ TL AV + KE TA Sbjct: 122 RGA--AGEASGQEEVDRALGALRVAHPA-ALPKGLSGPTLEAVTGVLKESPEGVTAAAAG 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + L ISR TARRYLE+ + +G+VGRP+ Y Sbjct: 179 ERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHY 217 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 10/220 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +LI++D+ +A +H Y+ +PGF + +L +E +P L+L+D Y P G Sbjct: 4 LRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDLRAVAAAVEEHRPDLMLVDVYFPQGS 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+++L + D +AAS+ TV+ A R G YL+KP E L L + + Sbjct: 64 GLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRAYARY 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGI-DPLTLNAVRKLFKEPGVQHTAETV 183 + L++ SQ ID A D+ P G T +AV + G + T V Sbjct: 119 RRQLDAPGPLSQSAIDRARRAM---TGSDDAPAGTAASATESAVADAVADGG-EVTVMDV 174 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+A+ ISR TA+RYL R + E+ +G GRP+ Y Sbjct: 175 ARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 10/229 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I+ED+ + E++ ++ I GF A NL +A I + K LILLD YLP Sbjct: 2 IKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLDIYLPREN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L +L + D + TA +++ EA+ G DY+IKP + R +T +R + Sbjct: 62 GLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNYRGK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARG--------EPKD--ELPTGIDPLTLNAVRKLFKEP 174 LE++D Q +D++ + G EP++ L G++ T + + + Sbjct: 122 YIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHIHKR 181 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE +A+ + ++R T R+YLEY + + ++ +GKVGRP+ Y Sbjct: 182 QNYFTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEY 230 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 14/231 (6%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 AP+ +L+V+D+ +A +H Y+ +P F+ + A + L+LLD +LPD Sbjct: 8 APVRVLVVDDDATVALVHRGYVETLPRFTVCGVVHRGADVLPAVRATAADLVLLDIHLPD 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+++L L DVV TAA D++TV +A+ GV+ YL+KP + + + + Sbjct: 68 ESGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYA 127 Query: 123 QRKHMLE-----SIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 Q H LE D+ Q+++D + +R LP G+ P TL+ V + Sbjct: 128 Q--HRLEFARRDGSDALGQEEVDRLLT--SRRRSASALPKGLSPRTLDVVVDHLRAGAGG 183 Query: 178 HTAETVAQA-----LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 V+ A I+R + RRYLE+ L +G+ GRP+ Y Sbjct: 184 DGTGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGY 234 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 8/217 (3%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A ++ ++I G I GN+ + +I + P LILLD YLP GI+ L + Q Sbjct: 2 VAMINQQFIGRFKGLRIIASVGNIGELWNIINKNVPDLILLDVYLPGETGIDFLQTVRQK 61 Query: 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSAS 135 ++ TAA D+ T+ +++ GV D+LIKP +YER + F Q + ++ Sbjct: 62 QLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLEETD 121 Query: 136 QKQIDEMFNAY--------ARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 Q +D++ A E ++ G+ +TL + + + + E + + + Sbjct: 122 QDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGYFSTEDITKKV 181 Query: 188 TISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR + ++YL + + E+ + VGRP ++H Sbjct: 182 DLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFH 218 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 81/160 (50%) Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + P DV+ T A D T+ +A+R G+FDY+IKP RL ++ + Sbjct: 63 GLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVESYAAM 122 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 L + +Q +D+ P D+LP G+ LT+ V E +AE VA Sbjct: 123 YVTLCGKQAVNQAWVDDHVFRRFPNLPADKLPKGLHRLTMEQVVLFLGENIAGVSAEEVA 182 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SR TARRYLEY A L ++ +G +GRP Y Sbjct: 183 RGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYR 222 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 13/192 (6%) Query: 35 LAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVS 94 +A ++AQAR ++ L L+D YLPDG GI+L+ EL P D V +AA+D TV Sbjct: 50 VATSIAQARELLTTQSFDLALVDVYLPDGSGIDLVREL-----PCDAVVLSAAADQATVR 104 Query: 95 EAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDE 154 A+ G + YLIKP L LT + + L+ D +Q ID +A R Sbjct: 105 SAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQADIDGGLDAL-RPRAAAP 163 Query: 155 LPTG---IDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEI 211 LP L L+AVR EP +A VA A+ ISR TA+RYL S+ + ++ Sbjct: 164 LPASQSVTRDLVLDAVRGT-AEP---MSAGEVAAAIGISRATAQRYLATLVSKGRLRMQL 219 Query: 212 VHGKVGRPQRIY 223 +G GRP++ Y Sbjct: 220 RYGSTGRPEQEY 231 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 107/228 (46%), Gaps = 13/228 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPG----LILLDNYL 60 + +L+VED+ LA HAE + +PGF + + +A + L+LLD L Sbjct: 2 IRVLVVEDDPLLAAGHAEKVAAVPGFEVVAAVHSGREALAAVGAAGADTPIDLVLLDMTL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL-- 118 PD G+ +L L A P DV+ TAA + TV +A+ GV YL+KP + L + L Sbjct: 62 PDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEERLRA 121 Query: 119 -TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNA-VRKLFKEPGV 176 RFR Q+ IDE + P G+ TL A V L P Sbjct: 122 YARFRADVAAASGEHGIDQQAIDEALSQLRTAAPG----RGVAAPTLQAVVAALRTAPSS 177 Query: 177 QH-TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 Q +A VA A +SR +ARRYLE+ ++ + E +G GRP+ Y Sbjct: 178 QGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 14/223 (6%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF---KPGLILLDNYLPD 62 +LIVED+ +A ++ EY+ F I + G + ++ K LI+LD +L + Sbjct: 3 NVLIVEDDPMVAMINEEYL---SSFQNIKVLGRTFTEKDTLDFLTTHKVDLIILDVFLGE 59 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI +L ++ Y DV+ T+A+ E + +A G DYLIKP +ERL ++ + Sbjct: 60 ENGIEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKIF 119 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKD-ELPTGIDPLTLNAVRKLFKE-PGVQHTA 180 R +L Q ID + P LP G++ TL V ++ P + Sbjct: 120 TRDEILNK-SKVKQDSIDNI-----HSTPSSLNLPKGLNSKTLEKVTQIISNLPNEEFGI 173 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + Q IS T ++YL+Y + I + +G +GRP +Y Sbjct: 174 KDICQITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLY 216 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 101/231 (43%), Gaps = 28/231 (12%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGL-------ILLDNY 59 +L+VEDE A HA+YI I G+ +A N QA + GL +LLD Sbjct: 1 MLVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMN 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPDG G+ + + D++ TAA DM+ V EA+ GV Y+IKP + L Sbjct: 61 LPDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLE 120 Query: 120 RFRQRKHML-----------ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVR 168 + ++ L +D+A A A+G P D + Sbjct: 121 AYSSYRNSLGGDSTEGEVTQTDVDTAIAALRTHTVTATAKGVP--------DAVQAEVKS 172 Query: 169 KLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 L +PG +A VA+ L +SR TARRYLE A ++ +G GRP Sbjct: 173 VLGDKPG--QSAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRP 221 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR-MMIERFKPGLILLDNYLPDG 63 L +LIV+D++ +A +HA + + GF AG++A AR + + L LLD YLPDG Sbjct: 17 LAVLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAALADHPHVDLALLDVYLPDG 76 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+L+ +L P D A +D V A+R G YLIKP L + L + Q Sbjct: 77 SGIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAGYAQ 131 Query: 124 RKHMLESIDSASQKQIDEMFNAYARG-EPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + +L++ + Q+ +D +A G P D G T + +LF A+ Sbjct: 132 YRRVLDA-EHVDQRAVDGALSALRFGTRPADRDDPG--SPTEKRILELFAAADGPLFADD 188 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 V+ A+ ++ TARR+L + + + +G GRP++ Y Sbjct: 189 VSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEY 229 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+V+D+ +A MHA+ + +PG + A +++AR +I R + L L+D YL Sbjct: 2 MTDEIRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARERVDLALVDVYL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ EL D AA D ++ G YLIKP L + + Sbjct: 62 PDGSGIDLVREL-----RCDAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGG 116 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGE---PKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + + +++ + +Q+QID +A R E PK + + T + ++ G Sbjct: 117 YTSYRRIVDG-GAITQEQIDAAASAL-RSERVVPKRDDGGSV---TERRIVDALRDAGSP 171 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+ +A+ + +S TARRYL + + +G GRP++ Y Sbjct: 172 LLADEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRY 217 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 14/229 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILL----AGNLAQARMMIERFKPGLILLDNYL 60 + +LI+ED+ + ++ ++ IP + + A AR + + LILLD YL Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYT--LILLDMYL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G L EL+ V+ TAA+D +T+ EAV GV D+LIKP ++R Q + + Sbjct: 59 PQLSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAK 118 Query: 121 FRQRKHMLESIDSASQKQIDEMF---NAYARGEPKDELPTGIDPLTLNAVRKLFK--EPG 175 F R ++ + SQ +D +F ELP G+ L+L + +PG Sbjct: 119 FT-RLLAVDDKHTVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTALATLKPG 177 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + VA +SR + ++Y+++ + + + IV+ GRP + Sbjct: 178 FSN--QDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQ 224 >UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939E4 Length = 321 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 10/216 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+L++ED+ + E++ ++I + GF I A ++ ++ +P LI LD Y+P G Sbjct: 11 TVLLIEDDPMVQEVNRQFIERVEGFRVIGTAATGSEGLRLVRELEPDLIFLDIYMPSQDG 70 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 L +L P DV+ TAA D T+ + +R G+ DY+IKP +ER+ L +FR Sbjct: 71 TEALRKLRAEALPVDVIVVTAAKDAPTIRQMIRKGIRDYIIKPFKFERVRDALEQFRAHH 130 Query: 126 HMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVR--KLFKEPGVQHTAE 181 L + + SQ ++DE+ + GE + G+ + R K + E G+ + Sbjct: 131 TALMAEGTLSQVELDEILHRTGERSGEYSESGAEGLACWPQDYFRRGKSYDEAGLYFEGQ 190 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVG 217 I T R+ + + A +V GK G Sbjct: 191 ------DIQETAGRKSQDISSDSSRDKAALVEGKPG 220 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 91 ETVSEAVRCGVFDYLIKPIAYERLG-----QTLTRFRQRKHMLESIDSASQK-------- 137 E+ +E + C DY + +Y+ G Q + RK S DS+ K Sbjct: 160 ESGAEGLACWPQDYFRRGKSYDEAGLYFEGQDIQETAGRKSQDISSDSSRDKAALVEGKP 219 Query: 138 --QIDEMFNAYARGEPKDE------LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTI 189 + + +A A +P ++ LP G++P T+ + ++ +AE VA + I Sbjct: 220 GIKTAGIQSAIAENQPLEKFPDLSNLPKGLNPATMRQIIYFVRQQKKALSAEEVADGVGI 279 Query: 190 SRTTARRYLEYCASRHLIIAEIVHGKVGRP 219 +R TARRYL+Y + I +G +GRP Sbjct: 280 ARVTARRYLDYLEKSRQVRLVISYGGIGRP 309 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPG------LILLDN 58 L +LIVEDE +A+ H E++R I GF +++ A Q + + L+LLD Sbjct: 7 LRVLIVEDEPLIAQAHREFLRRIGGF-EVIAAVRTGQEALRVAGSAAASATPVDLVLLDL 65 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LPD RG+++ L D++ TA ++ TV A+ GV YL+KP + + + Sbjct: 66 GLPDARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLLYLLKPFTFAAFEEKI 125 Query: 119 TRFRQRKHMLESI-DSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 ++R+ + L D+ SQ+ +D + + + G P T +AV + ++ Sbjct: 126 GQYRRYRQALSGAGDAVSQRDVDRAVSELRTTSTRRTVKKGAVPETEDAVGRAVRDSTGG 185 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQ--RIYHS 225 TA VA L SR TA RYLE A ++ +G GRPQ ++HS Sbjct: 186 LTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVRYVWHS 235 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 5/220 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI ED+ +A +H I P F I +A Q + +P L+LLD L G+ Sbjct: 6 VLIAEDDPDVARLHRLLIERHPAFKAIGVAEAGEQVLRDVATQRPDLVLLDLELRGMDGL 65 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 +L + + Y +V+ TAA D E V +R G+ DYL+KP ER+ L RF +R Sbjct: 66 EVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFSERVA 125 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 L + A AR LP G+ TL+ +R+ G + + + Sbjct: 126 GLPGSTVTQAAVDAALGAADAR----RLLPRGLQADTLDRLRQELAHAGEWLSTQELGGR 181 Query: 187 LTISRTTARRYLEYCASRHLIIAEIV-HGKVGRPQRIYHS 225 + ++ T RRYLEY + + +G GRP+++Y S Sbjct: 182 VDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYRS 221 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 7/223 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+++D+ + ++H Y+ + GF + +L AR +I + L+L D LP+G Sbjct: 2 INVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTIIAEEQVDLLLADYVLPEGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ E D + +A +D + V A+R G Y+ KP A E L L R+ + Sbjct: 62 GVELIRET-----DVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRYARF 116 Query: 125 KHMLESIDSASQKQIDEMFNA-YARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + SQ ++ + + P G T + + + TA V Sbjct: 117 RRYWDR-EKVSQPDLERQLRSLHDVASPGSAPAKGSGSSTSGRILEALESADQPLTAMEV 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ++ + SR TA+R+L A + + +G GRP+ +Y G Sbjct: 176 SEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLYGMG 218 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 10/231 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +LIVED+ + ++ +Y+ + G I L G A +E + L Sbjct: 1 MKTALRVLIVEDDPMVMRLNVDYLARLDG---IELVGQCASVPAALELLADETVDLLLLD 57 Query: 61 PDGR---GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 R G+ +L L D V TAAS++ETV A R GV DYL+KP ++ER Sbjct: 58 VYLRNRSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDA 117 Query: 118 LTRFRQRKHMLESI-DSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLNAV-RKLFKE 173 + R+ + L + + Q ID +F+ A + + +LP G+ P +L V + + Sbjct: 118 VESCRRARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILAL 177 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T+E + A +SR + R+YL++ L+ +G++GRP Y Sbjct: 178 EEDSFTSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WRA3_RENSM Length = 153 Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT L +LIV+D+ +A +H Y+ GFS + G+ A + +P L+L+D YL Sbjct: 1 MTDDLRVLIVDDDFHVARLHVAYVEATAGFSALDPVGSGEAALRAVSSLRPDLVLIDIYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G++LL L D + +AASD+++V +A+R G YLIKP E L L Sbjct: 61 PDWNGLDLLRNL-----DVDAMVLSAASDVDSVHKAMRRGALGYLIKPFGAEALSAKLRG 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYA 147 + + + +L + S Q + ++ Y Sbjct: 116 YARYRRLLAAGRSLDQDAVVDVSQRYG 142 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 18/229 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPG---LILLDNYLP 61 + +L+VE+E A++ +++ + F+ A A A + R PG L+LL +LP Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADA---LRRLAPGHVDLVLLGVHLP 57 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR- 120 D ++LL L A VV TA D+ + A+ GV YL+KP + + + L + Sbjct: 58 DMSWLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVREQLEKY 117 Query: 121 --FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE----P 174 +R +++ E + Q+++D++ R ++ LP GI +L AV K Sbjct: 118 EAYRSLRNVGELV--LVQQEVDQLLGVL-RDADENRLPKGISRESLQAVTAALKRCSGLG 174 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 GV +A VA+AL ISR T RRYLE+ + + GRP+ Y Sbjct: 175 GV--SAAEVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEY 221 >UniRef50_A5EWK6 Response regulator, NtrX n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWK6_DICNV Length = 452 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 3/150 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIV+DET + E + + G+ Q AG+ AQAR + + P LILLD ++PD G Sbjct: 8 TILIVDDETMICETLVDILTD-EGY-QTYTAGSAAQARTAKQMYHPDLILLDIWMPDSDG 65 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I LL E V+ + +ET EA + G +D+L KP++ +L T+ R Q + Sbjct: 66 ITLLREWTSQQLNASVIMMSGHGTIETAVEATKLGAYDFLEKPLSTAKLLITIKRALQTQ 125 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDEL 155 ++ ++A + Q+D R + +E+ Sbjct: 126 ALIAQ-NAALKAQLDPNIEIIGRSQAMNEV 154 >UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TWB2_YERKR Length = 162 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 78/136 (57%), Gaps = 2/136 (1%) Query: 10 VEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR--MMIERFKPGLILLDNYLPDGRGIN 67 ++D+ +AE++ Y+ + GF+ +L QAR +M L+LLD ++ G++ Sbjct: 1 MDDDAMVAELNKCYLNQVAGFNCCGSVSSLQQARDHLMAAEHPIDLVLLDVFMRQDNGLD 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL L + DV+ ++A+D+ T+ +A++ GV DYLIKP + R + L+ +R+++ + Sbjct: 61 LLPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYREKQSL 120 Query: 128 LESIDSASQKQIDEMF 143 L + +Q+ +D + Sbjct: 121 LGQREYCAQEDVDSLL 136 >UniRef50_Q13VN4 Two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family n=6 Tax=Burkholderia RepID=Q13VN4_BURXL Length = 460 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 9/150 (6%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P L++ +D L+ + A I GFS + A +A+AR + RF P ++L+D LPDG Sbjct: 2 PHALIVEDDPNSLSGLSA--ILAADGFS-VDTATTIAEARTALTRFIPDVVLVDLNLPDG 58 Query: 64 RGINLLHELVQAHYPGD---VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+++L L AH PG V+ T + +E+ E +R G++DYL+KP+ RL L R Sbjct: 59 SGLDVLQHL-PAHPPGGDLPVIVMTGNATVESAIEGLRHGIWDYLLKPVNIPRLRSLLAR 117 Query: 121 FRQRKHMLESIDS--ASQKQIDEMFNAYAR 148 + + E + + AS +Q+ + R Sbjct: 118 IPRPYELTEEVQTLRASLRQLGRFGSMLGR 147 >UniRef50_Q47K41 Helix-turn-helix, Fis-type n=1 Tax=Dechloromonas aromatica RCB RepID=Q47K41_DECAR Length = 421 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + E+ +E + I + LA N AR++ E +P L+LLD ++PD GI Sbjct: 4 VLVVDDEVGIRELLSEIL--IDEGYDVRLAENATAARLVREELRPDLVLLDIWMPDTDGI 61 Query: 67 NLLHEL-VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 +LL E H VV + ++T EA R G FD+L KPIA ++L T+ + Sbjct: 62 SLLKEWHAAGHLNMPVVMMSGHGTIDTAVEATRFGAFDFLEKPIALQKLLSTVQK 116 >UniRef50_Q3IJW8 Putative transcriptional regulator sensing dicarboxylates n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IJW8_PSEHT Length = 119 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 113 RLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK 172 RL Q L RF R+ + +Q ID + + R LP G+D LTL + F Sbjct: 4 RLEQALARFEARQQCFSAAVEVTQSMIDTLLGSKERVSTTTRLPKGVDSLTLKKIITAFN 63 Query: 173 E-PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E TA+ + + +SR+TARRYLEY + A+ +G +GRP+R Y Sbjct: 64 EHKETAFTAQQMGDLVGVSRSTARRYLEYMLEAGQVRADQSYGSIGRPERCYK 116 >UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=A0L4H3_MAGSM Length = 470 Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 2/125 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LL+VED +A ++ EYI+ P + Q+ A + + + P L+LLD LPD G Sbjct: 9 SLLLVEDSPSMAMVYQEYIKGEPQW-QVSHCKEGHAALVYLHQHTPDLVLLDLQLPDMHG 67 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL-TRFRQR 124 + +L + + P VV TA ++T EA R G FDYL KP + RL T+ RQ+ Sbjct: 68 LEILKAIHEQQLPTQVVIITAHGSVDTAVEATRLGAFDYLEKPFSANRLLVTMGNALRQK 127 Query: 125 KHMLE 129 LE Sbjct: 128 NLSLE 132 >UniRef50_Q1D326 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Cystobacterineae RepID=Q1D326_MYXXD Length = 447 Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 4/109 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 LL+V+D+ A + A +RH GF ++ LA +L AR + R P L++LD LPDG GI Sbjct: 5 LLLVDDDRTFASLAASVLRH-EGF-RVTLAHSLHDARGAMSREAPDLVVLDRRLPDGDGI 62 Query: 67 NLLHELVQAHYPGD-VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 + L EL +A P V+ TA D+ + EA++ G DYL KP+ + L Sbjct: 63 DFLPEL-RAQLPNTPVLMVTAHGDIASAVEAIQAGARDYLSKPVELDDL 110 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 24/233 (10%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ LI ED+ ++ + + + F + A N +A I K L+LLD +P+ Sbjct: 3 PVRTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQIRAHKVDLVLLDLSMPEV 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G ++ + DV+ T++ EA+R G +DY++KP +Y+RL +L ++ Sbjct: 63 DGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYKD 122 Query: 124 RKHMLESIDSA-SQKQIDEMF------NAYA-----RGEPKDELPTGIDPLTLNAVRKLF 171 S+ + +Q+Q+D +F N Y+ RG+ T + + Sbjct: 123 AFRYRASLPAELAQEQLDRVFYPESRLNLYSTSGIQRGD------------TAQRIMDVL 170 Query: 172 KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +A +A + ISR T R+Y E S +IA+ + GRP + Y Sbjct: 171 SQEERPLSAGEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_B8KKR5 Sigma-54 interaction domain family protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKR5_9GAMM Length = 481 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT L L++VED LA ++ Y++ Q + +L +A ++ F P L+LLD L Sbjct: 1 MTDALKLMMVEDSPSLAAIYNAYLKDEN--YQTVTVDSLGRAHATLDAFVPDLVLLDIEL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+ L + P VV TA + A++ G D+L KP RL TL Sbjct: 59 PDGSGIDFLEHAMALDKPPKVVVMTAHGTSDMAVNAIQMGASDFLTKPFDAARLKVTLGN 118 Query: 121 FRQRKHMLESIDSASQKQ 138 + + + I+ S KQ Sbjct: 119 AAAQLDLGKRIEELSNKQ 136 >UniRef50_Q6I3M3 Two-component response regulator, citrate/malate, C-terminus n=1 Tax=Bacillus anthracis RepID=Q6I3M3_BACAN Length = 105 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 10/102 (9%) Query: 128 LESIDSASQKQIDEMFNAYARGEPKDEL---PTGIDPLTLNAVRK---LFKEPGVQHTAE 181 L+ + S +QI+ +++ RG +E+ P GIDPLTL ++K E G+ TAE Sbjct: 3 LKKNNKLSIEQIEHLWSQ--RGVKGNEIEYAPKGIDPLTLAKIKKHMLTVNEEGI--TAE 58 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 ++ + +SR+TARRYLEY S + AE+++G VGRP+R Y Sbjct: 59 VLSSMVGVSRSTARRYLEYLISGKKVHAELIYGSVGRPERRY 100 >UniRef50_Q2YC24 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Betaproteobacteria RepID=Q2YC24_NITMU Length = 432 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIV+DE + E+ +E +R G+ ++ LA N AQAR ++ +P L+LLD ++PD G Sbjct: 21 TILIVDDEIGIRELLSEILRD-EGY-RVALAENAAQARAWRKQARPDLVLLDIWMPDTDG 78 Query: 66 INLLHELVQAH-YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 I LL E V + VV + ++T EA R G YL KP+ ++L T+ R Sbjct: 79 ITLLKEWVSSGLLTMPVVMMSGHGTIDTAVEATRMGAAAYLEKPVPLQKLLSTVGR 134 >UniRef50_Q7UEQ7 Sensor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UEQ7_RHOBA Length = 488 Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 2 TAPLT----LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLD 57 + P+T +L++ED+ AE ++ + I GF QI ++ A ++E + G+IL D Sbjct: 3 SGPMTYLNHILVIEDDLDAAESLSDML-SIDGF-QITTTASVQDAMELLESQRFGVILTD 60 Query: 58 NYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 +LPDG + L E+++ V+ T SD++ V A R G+ DY+IKPI E L QT Sbjct: 61 RHLPDGLIEHRLQEILEVSSKTPVIVVTGYSDLQAVILAFRQGISDYVIKPIIPEDLIQT 120 Query: 118 LTRFRQRK 125 + R +R+ Sbjct: 121 VRRILERR 128 >UniRef50_A5UQ67 Response regulator receiver modulated metal dependent phosphohydrolase n=2 Tax=Roseiflexus RepID=A5UQ67_ROSS1 Length = 513 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 10/135 (7%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFS-QILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+++L+VED+ P+ + H+ G+S + + G A + RF L+L D +P+ Sbjct: 11 PVSILVVEDD-PMVNSFCARLLHMKGYSVKTVFNGREALTMLQTNRFD--LVLTDLQMPE 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL---- 118 G+ LL E+ + H D + TA + +ET EA++ G FDYL KP + + L +T+ Sbjct: 68 MGGMELLREMREQHPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRRAV 127 Query: 119 --TRFRQRKHMLESI 131 R RQ + L + Sbjct: 128 EWRRVRQERQRLSEV 142 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 11/115 (9%) Query: 6 TLLIVEDETPLAE-----MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 ++LIV+DE + + +H E + G S++ A NL QA+ + +++ D + Sbjct: 4 SILIVDDEWIVVQNIRDNIHWEQL----GLSRVYTALNLVQAQQVFRDHPVDIMICDIEM 59 Query: 61 PDGRGINLLHELVQAHYPGDV-VFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 P+G GI L+ V+ H PG V +F T D +AV+ G FDYL+KPI YE L Sbjct: 60 PEGNGIELM-AWVKEHSPGTVRMFLTCHEDFAYAKQAVKLGAFDYLLKPIPYEEL 113 >UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinella succinogenes RepID=Q7M9T6_WOLSU Length = 330 Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 2/128 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +T PL+LL+VEDE EM A + P S++ +A N +A + + P ++L D + Sbjct: 5 LTFPLSLLLVEDEKMSQEMLARLLE--PRVSRLWIASNGKEALELYQENTPDVVLTDLVM 62 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ L+ + + VV +TA ++ + A+ GVF YL KP++++ L +TL + Sbjct: 63 PEMDGMELIERIKGLNPEATVVISTAFYELGFLMRAIELGVFGYLTKPLSFQGLEETLRK 122 Query: 121 FRQRKHML 128 +R +L Sbjct: 123 CHRRVELL 130 >UniRef50_A4JCR7 Two component, sigma54 specific, transcriptional regulator, Fis family n=48 Tax=Burkholderia RepID=A4JCR7_BURVG Length = 475 Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 T P L++ +D L+ + A + GFS + A +LA+AR + R P ++L+D L Sbjct: 13 FTMPHALIVEDDPNSLSGLTA--LLAADGFS-VDTATSLAEARTALGRAIPDVVLVDLNL 69 Query: 61 PDGRGINLLHELVQAHYPGD--VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 PDG G +LL L Q G V+ T + +E+ E +R G++DYL+KPI RL L Sbjct: 70 PDGSGFDLLQHLPQQQPNGSLPVIVLTGNATVESAIEGLRHGIWDYLLKPINIPRLRSLL 129 Query: 119 TRFRQRKHMLESIDS 133 R + +++ + + Sbjct: 130 ARIPRPYELIDEVQA 144 >UniRef50_C6D6D4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6D4_PAESJ Length = 521 Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 1/111 (0%) Query: 5 LTLLIVEDETPLA-EMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L+LLIV+DE +A ++ A G +I LA N+ QA+ +IE + +++ D +P G Sbjct: 2 LSLLIVDDEVYIARKIQASVNWEDLGIFEICLAHNIRQAKEIIESRQIDIVICDIEMPQG 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 GI+LL + + P ++ T S+ E +A++ G DYL+KP+ E L Sbjct: 62 TGIDLLAWVREKELPIAFIYLTCHSEFEYTKKAIQLGSLDYLLKPVQSEEL 112 >UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4KCC3_THASP Length = 501 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++L+V+DE + + G Q A + A +++ R L++LD LP G Sbjct: 52 SVLVVDDEEGMRNFLERTLARRCGMVQS--AADAEHAAVLMARLHFDLLVLDIALPGKSG 109 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I LHEL + Y GDV+ TA +DMET +A+R G D+++KP +++ ++ R +R Sbjct: 110 IEWLHELRENGYAGDVILITAFADMETAIDALRGGASDFILKPFRVDQILNSIKRCFERA 169 Query: 126 HM 127 + Sbjct: 170 GL 171 >UniRef50_B5JSZ7 Response regulator receiver:LytTr DNA-binding region n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSZ7_9GAMM Length = 246 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIV+DE P + + PG+ + AGN A + ++LLD +P Sbjct: 3 ISVLIVDDEPPARQRLVRLVEKTPGYEVVAEAGNGIDAIARFNETQAQIVLLDIRMPVMD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL-----T 119 GI L Q P ++FTTA SD +A DYL+KPI ERL Q L + Sbjct: 63 GIEAAQHLTQHETPPAIIFTTAYSDHAL--QAFESHAIDYLLKPIRQERLDQALEAAQRS 120 Query: 120 RFRQRKHMLESIDSASQKQI 139 Q K + E DS S++ I Sbjct: 121 NLAQVKSVAEDSDSDSRQHI 140 >UniRef50_Q1LIR4 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=cellular organisms RepID=Q1LIR4_RALME Length = 560 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 ++AP +L+++DE L E+ +R + +++AG+LA+AR+ + + L+L D L Sbjct: 5 LSAPDPILVIDDEADLRELLDISLRRM--GHDVVMAGSLAEARLRLAERRYSLVLTDMRL 62 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG----Q 116 DG GI ++ +L + V TA + +A++ G FDY+ KP++ E+L Sbjct: 63 GDGLGIEIVRQLSASPERTPVAVITAYGSADNAVDALKAGAFDYIAKPVSLEQLRTLILN 122 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRK 169 L R ++ + ++ D A + + + G+ L G+ P ++ VR+ Sbjct: 123 ALGRHQRGANGNDTSDQADAGDASDATDGASLGDRAAGLLPGVSP-AIHEVRR 174 >UniRef50_C2G2I4 Response regulator n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G2I4_9SPHI Length = 246 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 10/129 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAG---NLAQARMMIERFKPGLILLDNYLP 61 +T++I+EDE A + E + + G S L G N++ A +I +P +IL+D L Sbjct: 2 ITVVIIEDE---AVIEKEIVDLLSGESDTRLVGSSDNVSSAVQLINMHRPDVILMDIQLR 58 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 DG +++ L + P ++VF TA A++CG DYL+KPI + Q R+ Sbjct: 59 DGTAFDIIRLL--DYTPQNIVFITAYDQFAI--RAIKCGALDYLLKPIDHSEFRQAFERY 114 Query: 122 RQRKHMLES 130 R R ++S Sbjct: 115 RTRNKDIQS 123 >UniRef50_A8FXH4 Two component, sigma54 specific, transcriptional regulator, fis family n=7 Tax=Gammaproteobacteria RepID=A8FXH4_SHESH Length = 500 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 4/147 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 ++ T L+VED L ++ EY+R +++ + A + +++P L++LD L Sbjct: 3 ISQSFTALLVEDSMSLGALYTEYLRS--EGAKVTHVNHGEDALTELAQWQPDLLVLDIKL 60 Query: 61 PDGRGINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 PD G+ +L + VQ YPG V+ TA ++ E+++ G FD+L+KP +RL T+ Sbjct: 61 PDMSGMEILQK-VQTSYPGITVIMITAHGTIDLAVESMKSGAFDFLVKPFDAKRLSITVR 119 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAY 146 +++ ++ ++ Q E + + Sbjct: 120 NALKQRQLVNLVERYEQSLPKENYMGF 146 >UniRef50_C5V0U3 Response regulator receiver protein n=2 Tax=Gallionellaceae RepID=C5V0U3_9PROT Length = 215 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + E+ AE I G+ QI LA N QAR +P L+LLD ++PD G+ Sbjct: 5 ILVVDDEVGIRELLAE-ILFDEGY-QIHLAENAEQARAFRHEHEPDLVLLDIWMPDTDGV 62 Query: 67 NLLHELV-QAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 LL E V Q VV + +ET EA G D+L KPI+ ++L T+ + Sbjct: 63 TLLKEWVEQDLLTMPVVMMSGHGTIETAVEATLIGAVDFLEKPISMQKLLNTVAK 117 >UniRef50_C8XCJ5 Two component transcriptional regulator, LytTR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCJ5_NAKMY Length = 299 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-----ERFKPGLILLD 57 A LT+L V+DE P + A +R P IL AGN AQA ++ + +P +LLD Sbjct: 24 AGLTVLAVDDEAPALDEVAYLLRGDPRVGTILTAGNAAQALALLTGSPGQGPEPDAVLLD 83 Query: 58 NYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 +P G++L L P V F +A + EA G DYL+KP+ RL + Sbjct: 84 IAMPGWDGVDLARVLSGLPRPPAVAFLSAHDNRAV--EAYEIGAVDYLLKPVRAARLAEA 141 Query: 118 LTRF 121 +TRF Sbjct: 142 VTRF 145 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLIVEDE A + + R I LA + QA + + +ILLD LPDG Sbjct: 1 MKLLIVEDEVDFATLLKQ--RLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGE 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++LL + +A +VV T +ET ++++ G +DYL KP +L TLT+ ++ Sbjct: 59 GLSLLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEK 118 Query: 125 KHMLESIDSASQ 136 K + E S+ Sbjct: 119 KRLAEQAAGLSE 130 >UniRef50_C6S9I1 Nitrogen assimilation regulatory protein NtrX n=28 Tax=Neisseriaceae RepID=C6S9I1_NEIML Length = 425 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 7/115 (6%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIV+DE + ++ +E ++ G+S + LA N +AR + + +P ++LLD ++PD GI Sbjct: 6 ILIVDDEIGIRDLLSEILQD-EGYS-VALAENAEEARKLRHQARPAMVLLDIWMPDCDGI 63 Query: 67 NLLHELV---QAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LL E Q + P VV + + ++T EA + G D+L KPI+ ++L T+ Sbjct: 64 TLLKEWAKNGQLNMP--VVMMSGHASIDTAVEATKIGALDFLEKPISLQKLLSTV 116 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 5/107 (4%) Query: 34 LLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPG-DVVFTTAASDMET 92 L A NLA A ++ + +P L L D LPDG G++L+ E +Q HYP V TA +E Sbjct: 25 LRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLI-EHIQTHYPTIPVAMITAHGSVEA 83 Query: 93 VSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQI 139 +A++ G FD++ KPIA E+L + Q K ++ D A+ Q+ Sbjct: 84 AIDALKLGAFDFVSKPIALEKLRDIVNHALQVK---DAGDDAASDQL 127 >UniRef50_B0S387 Two-component response regulator n=6 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S387_FINM2 Length = 231 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++LIV+DET L E +++ GF++I A NL ++R + FK L++LD LPDG Sbjct: 7 FSILIVDDETNLLENLYNFLKE-KGFNKIYTAKNLKESRFKLTNFKIDLVVLDLMLPDGS 65 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 G +LL E+ + V+ +A ++ E DYL+KP Sbjct: 66 GFDLLKEIRKTSDMA-VIILSALDGIDDRKEGFENKADDYLVKP 108 >UniRef50_C0CZK4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CZK4_9CLOT Length = 230 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ T+L+VED L +++ + + G+ ++L A LA+AR + R +P I+LD L Sbjct: 1 MSETKTVLLVEDNKDLNNINSRAL-WLSGY-RVLTALTLAEAREHLSRCEPDAIILDILL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G++ E ++ ++F T+ + +E E +R G DYL KP E L + Sbjct: 59 PDGSGVDFCRE-IRECTAAPILFLTSVAGVEKALEGIRAGGDDYLNKPFHIELLLARIEA 117 Query: 121 FRQRKHMLESIDSA 134 F +R +++ + A Sbjct: 118 FWRRDEIMKRMKPA 131 >UniRef50_Q0AV33 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AV33_SYNWW Length = 334 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 15/135 (11%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIR-----HIPGFSQILLAGNLAQARMMIERFKPGLIL 55 M +++LIVED+ E+H E I+ H F + + NL +AR+ +E KP +++ Sbjct: 1 MKERISVLIVEDD----ELHTELIQRAFEDHQSRF-MLRFSSNLMEARIYMEERKPDIVV 55 Query: 56 LDNYLPDGRGINLLH-ELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK-PIAYER 113 D LPDGRGI L + Q+ YP ++ T+ + E E ++ G DYL+K P A+ Sbjct: 56 CDWLLPDGRGIELFSPDKEQSSYP--IIMMTSYGNEELAVETIKAGALDYLVKSPEAFAG 113 Query: 114 LGQTLTR-FRQRKHM 127 L + R R+ +H+ Sbjct: 114 LPDFILRGLREWEHI 128 >UniRef50_D2R311 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R311_9PLAN Length = 511 Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 9/118 (7%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR-MMIERFKPGLILLDNYLPD 62 PL +L+++D+ PL + I+ +P F +++ LA+AR + R +LLD LPD Sbjct: 9 PLRILVIDDD-PLVARFVQSIKTLPTF-ELICCRTLAEARRQSLSRLD--TVLLDQGLPD 64 Query: 63 GRGINLLHEL--VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 G G++LL E+ H P V+F TA T EA++ G FDYL KP+ L + L Sbjct: 65 GEGLSLLDEIRACDPHLP--VLFITAQVGSRTAIEAMKRGAFDYLTKPLDLAALARQL 120 >UniRef50_UPI0001C35D95 histidine ammonia-lyase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35D95 Length = 335 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+L+V+D L ++ +R P + AG L +AR ++++ P I+LD LPDG G Sbjct: 208 TVLLVDDSPELLRLNERVLR--PEGYSLFCAGTLGEARAVLDQTAPDAIVLDIDLPDGNG 265 Query: 66 INLLHEL-VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 ++ EL A+ P VVF TA SD +TV + G +L KP E L + + Sbjct: 266 LDFCRELRAAANIP--VVFLTAHSDAQTVQKGAESGSCAFLTKPYQMEELQKAVA 318 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTA +LIV+DE + M + + GF + A N A + P ++L+D + Sbjct: 1 MTAINRILIVDDEDNVRRMLSTAF-ALQGF-ETHCANNGRTALHLFADIHPDVVLMDIRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ GI L E+ V+ TA +++ET EA+RCG FDY+IKP + L + R Sbjct: 59 PEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQR 118 Query: 121 FRQRKHMLESI 131 Q + M + I Sbjct: 119 ALQLQSMKKEI 129 >UniRef50_UPI0001698479 sigma-54 dependent DNA-binding response regulator MrpB n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698479 Length = 282 Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 10/135 (7%) Query: 7 LLIVEDETPLAE---MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LI+ED+ E MH E + H + LAG+LA+ R + P ILLD LPDG Sbjct: 4 ILIIEDDPGFGELLLMHLEDLGHT-----VRLAGSLAEGRRQYHQATPEAILLDQQLPDG 58 Query: 64 RGINLLHELV-QAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G LL E+ QA P V+ + SD V EA++ G +D++ KP+ L TL Sbjct: 59 LGTQLLMEIGDQADSP-PVIMISGVSDNRLVIEAIQQGAYDFIRKPLDELALDTTLGNAL 117 Query: 123 QRKHMLESIDSASQK 137 ++ + + ++S++ Sbjct: 118 RQYRLSRQVAASSEQ 132 >UniRef50_A7K511 Response regulator n=30 Tax=Gammaproteobacteria RepID=A7K511_VIBSE Length = 507 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED T LA ++ +Y++ P I +A IER KP LI+LD LPD G Sbjct: 5 VLLVEDSTSLAILYKQYVKDEP--YDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGE 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++L + Q P V+ TA ++ ++ G D+L KPI +RL ++ +R Sbjct: 63 DVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 122 Query: 127 MLESIDSASQK 137 + + +++ K Sbjct: 123 LEDLVENIQSK 133 >UniRef50_O07050 FK506 binding protein (fkpA) n=1 Tax=Aeromonas hydrophila RepID=O07050_AERHY Length = 283 Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED LA ++ +Y+ G+ ++L A QA + P ++LLD LPD G+ Sbjct: 11 VLLVEDTRSLAVVYEQYLAQ-DGY-EVLRADCGQQALAQLLSSPPPVVLLDLELPDMSGM 68 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 ++L ++ + P VV TA ++ EA+R G FD+L KP +RL T Sbjct: 69 DILQQITEQQLPCSVVVITAHGSVDVAVEAMRLGAFDFLTKPFDGKRLCAT 119 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 9/130 (6%) Query: 7 LLIVEDETPLAEMHAEYIRHIP--GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 LLIV+DE P+A + P G S+++ A N QA + R + ++L D +P Sbjct: 4 LLIVDDE-PIAVEGLKSGVDWPSIGISRVMTAYNADQAMEVFGRERVDILLCDIEMPKAS 62 Query: 65 GINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG----QTLT 119 G+ LL E V++H+ G + +F T +D + +A++ G DYL+KPI Y+ L + + Sbjct: 63 GLQLL-EWVRSHWSGTETIFLTCHADFQYAKQAIQLGSLDYLLKPIPYDELKAVVEKAIR 121 Query: 120 RFRQRKHMLE 129 + + +HM E Sbjct: 122 KMDKEQHMSE 131 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 20/214 (9%) Query: 7 LLIVEDETPLAE---MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LIV+DE+P+ E + E+ R G +L A N +A+ +IE+ +P LIL D +P Sbjct: 4 VLIVDDESPVREAVKLLGEWERF--GVKAVLEAKNGLEAKALIEQERPALILSDIQMPHC 61 Query: 64 RGINLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI L+ E V H +V T + + A++ G FDYL+KPI + L TL+R Sbjct: 62 DGIELM-EWVHDHASFSKLVVLTGYDEYSYMRRAIQYGSFDYLLKPIDPDVLNDTLSR-- 118 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELP-TGIDP---LTLNAVRKLFKEPGVQH 178 + + + +S+ I ++ Y +EL G+ L+ + + FK+ Q+ Sbjct: 119 ---ALADVVKESSEDPIAQI-GTYIEQHFAEELSLQGMSERFYLSREYISRRFKQ---QY 171 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 LTI A+R LE R +A+ V Sbjct: 172 GVNLSEYVLTIRMNEAKRLLETSRQRIYEVAQAV 205 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 5/135 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIVED+ PLAE EY+ + +I+ G LA +R++ ++P L++LD LP G+ Sbjct: 5 ILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRIL--EWQPALVILDIMLPQKDGL 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++ E V+ Y G ++ TA + + G DYL+KP+ L + F +R Sbjct: 63 SVCRE-VRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRDR 121 Query: 127 MLESIDSASQKQIDE 141 + ESI A +Q+ E Sbjct: 122 LAESI--AENQQVSE 134 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 49/90 (54%) Query: 29 GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAAS 88 GF +LLA N +A M + +P LIL D +P GI LL EL + P +++ T Sbjct: 28 GFEVVLLAKNGKEALEMASQHRPDLILSDIRMPVMDGIQLLQELREREIPCEILLLTGYQ 87 Query: 89 DMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 + E A+R GV DY+ KPI Y L +T+ Sbjct: 88 EFEYARTAIRYGVKDYICKPINYFELEETV 117 >UniRef50_A9KTC8 Two component transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=A9KTC8_CLOPH Length = 253 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 4 PLTLLIVEDETPLAEMHAEYIR-HIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + LLI +DE + A+YI+ H FSQI LA N QA +I +++P ++LLD +P Sbjct: 2 SMKLLIADDEDTIRNGIAKYIKLHTDRFSQIYLAENGQQALDIILQYQPDMMLLDVQMPL 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L E + + + D E +A+R G DYL+KP + + + + Sbjct: 62 KTGLEVLQEAQKLSLVPKTIILSGYDDFEYARKALRYGAKDYLLKPCRSSEILEAINKLV 121 Query: 123 QRK 125 Q + Sbjct: 122 QEQ 124 >UniRef50_C6L8Z1 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L8Z1_9FIRM Length = 539 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRH--IPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 L LL+VEDE E IR G QIL A N + + + +P L++ D +P Sbjct: 12 LKLLVVEDELYAREALVRKIRQYDTAGDFQILEASNGKEGFGLYRQEQPELVITDIRMPG 71 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL + Q VV +A S+ +A++ GV DYL+KP++ E L L +F Sbjct: 72 MDGLELLENIRQLGQKTQVVILSAYSEFAYAQKAIQYGVSDYLLKPVSDEALENCLDKFM 131 Query: 123 QR 124 QR Sbjct: 132 QR 133 >UniRef50_D0XEF1 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEF1_VIBHA Length = 519 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED T LA ++ +Y++ P I +A IER KP LI+LD LPD G Sbjct: 5 VLLVEDSTSLAILYKQYVKDEP--YDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGE 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR-- 124 ++L + + P V+ TA ++ ++ G D+L KPI +RL ++ +R Sbjct: 63 DVLDWINENEIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 122 Query: 125 -KHMLESIDS 133 ++++E+I S Sbjct: 123 LENLVENIQS 132 >UniRef50_D0KVR8 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Proteobacteria RepID=D0KVR8_HALNC Length = 461 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 7/111 (6%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + + AE + G++ + A + +AR +I +P LILLD ++P GI Sbjct: 6 ILVVDDEVEIRNLLAELLAD-EGYT-VSSAADANEARALIAARRPDLILLDIWMPGQDGI 63 Query: 67 NLLHE---LVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 +LL E L Q +P VV + +ET EA R G FD++ KPI+ ++L Sbjct: 64 SLLREWAELDQLVWP--VVMMSGHGTVETAVEATRLGAFDFIEKPISLDKL 112 >UniRef50_A9BWZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=cellular organisms RepID=A9BWZ0_DELAS Length = 547 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIV+D+ A E + + FS + +A L AR + P L+LLD LPDG G+ Sbjct: 4 VLIVDDDADSAATMRELV-GVDRFS-VAVAHTLRDARRQMAMQPPSLVLLDLQLPDGNGM 61 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 +L + Q +V T + +++ EA+R G DYL+KP+ RL L+RF Sbjct: 62 DLFGD-QQVPQDSQIVLVTGHASLDSSIEALRRGAMDYLVKPVGIGRLEDILSRF 115 >UniRef50_C7MLP3 Response regulator of the LytR/AlgR family n=8 Tax=Coriobacteriaceae RepID=C7MLP3_CRYCD Length = 238 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP---GLILLDNYLP 61 L +IV+DE P +E + Q + A R IE+ K ++ LD +P Sbjct: 3 LKAIIVDDEAP---ARSELKFLLDELGQTEVVAEAASVREAIEKLKEYPCDVMFLDINMP 59 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + G+ L L YP VVF TA S E EA + DYL+KP+ ERL Q L R Sbjct: 60 EASGLQLAEALQHLKYPPAVVFVTAYS--EFAIEAFKVNAIDYLVKPVESERLSQALARV 117 Query: 122 RQ 123 R+ Sbjct: 118 RE 119 >UniRef50_B8G9X0 Response regulator receiver protein n=3 Tax=Chloroflexus RepID=B8G9X0_CHLAD Length = 217 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED+ L A +R G++ + A N+++AR+ + +P ++LLD LPDG GI Sbjct: 5 ILLVEDDYILQFSLATILRR-EGYA-VDTARNVSEARLALVSRRPRIVLLDLGLPDGSGI 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 ++L ++ TTA + EA+ G FDYL KPI +E L TL R Sbjct: 63 DILKACATEPDRPLIIVTTANDSPKAALEALSLGAFDYLTKPINHETLRYTLRR 116 >UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A6BJV8_9FIRM Length = 508 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + + ++EDE P+ E + I P + + A N A+ +++E P LI+LD +PD Sbjct: 1 MKIAVIEDEKPIREGLVHILNKISPEYQVVGSAKNGAEGLILLEEEMPDLIMLDIQMPDM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ +L E V+ TA SD +A+ G+ +YL+KP+ L +TL + ++ Sbjct: 61 DGLQMLKEARARGIYTKVIILTAYSDFSYAKKAIELGIENYLLKPVNLTELKKTLEKIKE 120 >UniRef50_A0Z5D9 LuxO repressor protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5D9_9GAMM Length = 454 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 LIVED + L ++ Y+ G+ ++ A M +E KP LILLD LPDG G++ Sbjct: 4 LIVEDSSTLCAIYEAYLDDT-GY-EVHTVETFTGALMALESLKPDLILLDIELPDGNGLD 61 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL E V P V +E +A+ G D+L KP RL TL QR + Sbjct: 62 LLAETVLMK-PQPAVVVMTGHGIEFADQAIERGADDFLGKPFDASRLRVTLANVAQRLEL 120 Query: 128 LESIDSASQKQ 138 + + +K+ Sbjct: 121 TQKLSQLGEKR 131 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE E+ E++R + G+ Q A +L +A ++E ++LLD +LPDG Sbjct: 1 MRVLVVEDEKDFRELLTEHLRGL-GY-QTEGACDLEEAYEVLEERDFSVVLLDLFLPDGN 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ LL + + +VV T ++T EA++ G +D+L KP + + + T+ + Sbjct: 59 GMELLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKK 114 >UniRef50_Q31J89 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Gammaproteobacteria RepID=Q31J89_THICR Length = 452 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 4/142 (2%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P LLIV+DE + + E G+ ++++A N QA+ + P LI LD ++PD Sbjct: 3 PGKLLIVDDEKDIRSLMQEIFSE-EGY-EVMVAANGQQAQAIWRDKAPDLIFLDIWMPDI 60 Query: 64 RGINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI+LL E++ + V+ + +ET EA + G +D+L KP++ +L T R Sbjct: 61 DGISLLKEMIAENVLDHSSVIMMSGHGTIETAIEATKLGAYDFLEKPLSLAKLLITAERA 120 Query: 122 RQRKHMLESIDSASQKQIDEMF 143 + H+ QK D++ Sbjct: 121 MEHLHLHSENRHLKQKLPDQIL 142 >UniRef50_B4SBH8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteroidetes/Chlorobi group RepID=B4SBH8_PELPB Length = 464 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 77/137 (56%), Gaps = 6/137 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNL-AQARMMIERFKPGLILLDNYLP 61 + + +LI++DE ++Y+++ GF I + N + ++ ++ L++LD LP Sbjct: 7 SQIKVLILDDEIDFTNEISDYLKN-TGF--IPFSANTPEEGYAILSKYNIDLLILDVRLP 63 Query: 62 DGRGINLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+++L V++ YPG +V+ +A DM+TV +++R G FDYL KP+ Y + + R Sbjct: 64 GTNGLDILKN-VKSLYPGIEVIMVSAHGDMDTVIDSIRLGAFDYLRKPMRYIDIQIAIER 122 Query: 121 FRQRKHMLESIDSASQK 137 ++ M ++ A +K Sbjct: 123 TQKYLKMQRNLAHAEEK 139 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 9 IVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINL 68 +VED +A ++ Y+ P I + G A I R +P LILLD LPD G+++ Sbjct: 1 MVEDTASVAALYRSYL--TPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDV 58 Query: 69 LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR-FRQRKHM 127 L+ + + +VF TA ++T EA+R G D+LIKP +RL T+ R+ + Sbjct: 59 LYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKL 118 Query: 128 LESIDSASQK 137 +D+ +Q Sbjct: 119 KNDVDNKNQN 128 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Query: 9 IVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINL 68 +VED +A ++ Y+ +P I + G A ++ P LILLD LPD G+++ Sbjct: 1 MVEDTASVAALYRSYL--MPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDV 58 Query: 69 LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR-FRQRKHM 127 LH + +H ++F TA ++T EA+R G D+LIKP +RL T+ R+ + Sbjct: 59 LHAVKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKL 118 Query: 128 LESIDSASQKQ 138 DSA + Sbjct: 119 KNDADSAGSQN 129 >UniRef50_B9M936 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M936_GEOSF Length = 452 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 43/75 (57%) Query: 48 RFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK 107 R +P L++LD LPD G+ +L EL +V+ TA DME+ +A++ G FDYL K Sbjct: 44 RVQPDLVVLDIRLPDMDGLEVLKELRSRVPNAEVIMITAHQDMESTIKAIKAGAFDYLHK 103 Query: 108 PIAYERLGQTLTRFR 122 PI + + L R R Sbjct: 104 PIDIDEMDSVLKRLR 118 >UniRef50_C6D3P9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3P9_PAESJ Length = 483 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 7 LLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE +A ++ I G+ I A + + A IE +P +++ D +P G Sbjct: 4 VLIVDDEPWVAYGISKLIDWETEGYQVIGQAYDGSSALRFIEEHRPEVVVSDIRMPGLNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 I LL+E+ + +V+ + S+ E +A+R G FDYL+K I E+L +T+ R R Sbjct: 64 IELLNEIAKQKLGTEVILASGYSEFEYAQQALRLGAFDYLLKQIEKEQLLETIMRLR 120 >UniRef50_C6X6J4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X6J4_METSD Length = 477 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE A A+ ++ G+ + A ++A R + +F P L LLD LPDG Sbjct: 20 MRILLVEDEAVFARAVAKRLQK-AGY-ECEHAESIADGRALARQFAPDLALLDMRLPDGN 77 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL +LV V+ TA D+ A++ G DY+ KP+ E L + + Sbjct: 78 GLELLSDLVAKGVA--VIVLTAHGDVMDAVNAMKQGATDYIKKPVDLEELLLAIEKAENA 135 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE 150 ++ +D + Q+ E N GE Sbjct: 136 TNLKRQLDYSRQRNSHETENIEMLGE 161 >UniRef50_Q1D407 Sensor protein n=2 Tax=Cystobacterineae RepID=Q1D407_MYXXD Length = 1109 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +A + E + +I GF + LAG++ + R + +P ++LLD LPDG G Sbjct: 800 VLVVDDDAKIAAICREVLENI-GFD-VALAGSIEEGRRSLRERRPDVVLLDVTLPDGDGF 857 Query: 67 NLLHELVQAHYPG--DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 L E+ G V+F +A ++ + A++ G DYL KP LG + +R Sbjct: 858 VFLEEIKAESAGGHISVIFISARAETSSKVRALKLGGDDYLTKPFDALELGARVESVMRR 917 Query: 125 KHMLESIDSASQ 136 K S +Q Sbjct: 918 KEQELSASPTTQ 929 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 4/140 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 TLLIV+DE L ++ + G ++ +A + +A ++ER L+L+D +P+ G Sbjct: 5 TLLIVDDEEDLLQLLKRSLEPDLG-CEVKVASSGGEALNVLEREPVDLLLVDMKMPEMNG 63 Query: 66 INLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 + LL E V+A YP VV TA +E +A+R G +D++ KP +E L +L + +R Sbjct: 64 LELL-EQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKALER 122 Query: 125 KHML-ESIDSASQKQIDEMF 143 +L E+++ Q+ E F Sbjct: 123 SRLLRENLNLQRHVQMHEAF 142 >UniRef50_B8CZL9 Response regulator receiver protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZL9_HALOH Length = 386 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 29/197 (14%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 LL+VEDE PL E A ++ ++ A N QA ++ + +++ D +PD G Sbjct: 3 NLLLVEDEKPLLEKIACHVDWEDNGYKVYTARNGKQALKILNNVRIDILVTDIKMPDISG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL----------- 114 I L+ E+ + + ++ E +++R GV DYL+KP RL Sbjct: 63 IRLIEEIKDNKADMSTIIISGHAEFEYAQKSIRLGVTDYLLKPFHSSRLLEVVNRARKQL 122 Query: 115 ------GQTLTRFRQRKHML----ESIDSASQ----KQIDEMFNAYA---RGEPK-DELP 156 + L RF+Q + + + +DS Q + DE F Y+ + E +EL Sbjct: 123 LKKRKEKEDLKRFKQELNKILKENDQLDSKLQMFFNRDRDEFFREYSLIIKNENMFNELK 182 Query: 157 TGIDPLTLNAVRKLFKE 173 G + + A++KLF++ Sbjct: 183 NGREEDLIIAIKKLFED 199 >UniRef50_C8NB60 Nitrogen assimilation regulatory protein NtrX n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NB60_9GAMM Length = 456 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 20/143 (13%) Query: 7 LLIVEDETPLAEMHAE------YIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +LI++DET + + ++ Y+ H A N +AR + KP LILLD ++ Sbjct: 10 ILIIDDETGILDTLSDILGDEGYLTHT--------AANAEEARQKNLQHKPQLILLDIWM 61 Query: 61 PDGRGINLLHELVQA---HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 PD GI+LL E ++ P VV + +ET EA + G +D+L KP++ +L T Sbjct: 62 PDTDGISLLREWQKSGTLQCP--VVIMSGHGTIETAVEATKLGAYDFLEKPLSSAKLLLT 119 Query: 118 LTRFRQRKHMLESIDSASQKQID 140 + R Q H L++ ++A + +I+ Sbjct: 120 VQRALQ-THNLQTQNAALKAKIN 141 >UniRef50_B7JR06 DNA-binding response regulator n=23 Tax=Bacillus cereus group RepID=B7JR06_BACC0 Length = 231 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 5/202 (2%) Query: 5 LTLLIVEDETPLAEMHAEYI--RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L+V+DE PL E++ R P ++ + LA + A+A + E+F L LLD +LP Sbjct: 1 MNVLLVDDE-PLELEQLEFLIHRQFPNWT-LHLALDAAEALSINEKFSIHLALLDIHLPG 58 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ L +L + D++ TA + + +++R GV DY+ KPI + L L +++ Sbjct: 59 ISGLQLGEKLKNNNANLDIIIVTAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYK 118 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +++ S Q +D + ++ ++ + R+ +E GV + Sbjct: 119 GDSNII-SYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTYLSRRFHEEVGVSFSGYI 177 Query: 183 VAQALTISRTTARRYLEYCASR 204 + + +S+ + +C S+ Sbjct: 178 MQYRIEMSQKYLTEHPHWCISQ 199 >UniRef50_D2QDN3 Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QDN3_9SPHI Length = 256 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 ++I++DE P ++ ++ +P + N Q I+ KP L+ LD +P+ G+ Sbjct: 7 VIILDDEPPARDLIETFVSQLPDLQCVASCSNAIQGLQAIQDLKPDLLFLDIQMPEMTGL 66 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 +L+ +L P +++ TTA S V DYL+KPIA++R + + +FR+++ Sbjct: 67 DLM-KLPLTPRP-EIILTTAYPQYALTS--YEFSVLDYLVKPIAFDRFIRAIVKFREKRQ 122 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P T+LI++DE L + I + GF+ +L AGN+ A+ +IE+ + ++L D LPDG Sbjct: 2 PGTVLIIDDEEKLRSLTKRII-ALEGFN-VLEAGNIKSAQKIIEKEEIDVVLCDVKLPDG 59 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++ + + + +++ TA ++ +A++ G FDYL K R+ L R + Sbjct: 60 SGVDYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALE 119 Query: 124 RKHMLESIDS 133 + + + I+ Sbjct: 120 KVQLQKRIEK 129 >UniRef50_C6X8K9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X8K9_METSD Length = 443 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M PL L+V+DE + E+ + + + A NL A+ M+ + L L D L Sbjct: 1 MANPLNCLVVDDEHDIRELIVMTLTRMGLKADS--AANLDDAKFMLRQKSYALCLTDMRL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 PDG G++L+ + Q H V TA + A++ G FDY+ KPI+ ++L Sbjct: 59 PDGNGLDLVRYINQHHAGLPVAVITAYGSADNAVSALKAGAFDYITKPISLQQL 112 >UniRef50_A3ZZY0 Nitrogen assimilation regulatory protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZZY0_9PLAN Length = 477 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 9/141 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFS-QILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +L+++D+ +A + E + GF+ + A A ++E+ +P ++LLD LPD Sbjct: 1 MRMLVIDDDPGVAIIVQEAL---SGFAIEFHSADCGATGLQLLEKRRPDVVLLDQVLPDC 57 Query: 64 RGINLLHEL--VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ-TLTR 120 GI L+ ++ + + P ++F TA S + EA++ G FD+L KP A E + + TL Sbjct: 58 SGIELIEKIQAIDSRLP--ILFATARSSSDLAIEAMKLGAFDFLTKPFAPETIAEKTLEA 115 Query: 121 FRQRKHMLESIDSASQKQIDE 141 R ML + SQ +I E Sbjct: 116 IESRHLMLMPVQLPSQSEIAE 136 >UniRef50_Q3JAF7 Two component transcriptional regulator, LuxR family n=2 Tax=Nitrosococcus oceani RepID=Q3JAF7_NITOC Length = 205 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 50 KPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI 109 +PG I+LD +P+ G++L LV P V+F T +D+ TV AV+ G D+L+KP Sbjct: 49 QPGCIILDVQMPESTGLDLQEYLVSEQIPIPVIFITGQADVPTVVRAVKQGAVDFLLKPF 108 Query: 110 AYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKD 153 +E TL R Q L+ I + Q D + A P++ Sbjct: 109 DFE----TLLRSIQEAIELDQIKRTERAQRDTIEKRLASLTPRE 148 >UniRef50_Q0HQS8 Response regulator receiver sensor signal transduction histidine kinase n=5 Tax=Shewanella RepID=Q0HQS8_SHESR Length = 524 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LIVED L ++ AE +R + GF Q+L A QA +++R + L+LLD +PDG Sbjct: 6 MQCLIVEDMDALRKIMAEQLRQL-GFGQVLQADCGRQALDVLQRHQIELLLLDWSMPDGD 64 Query: 65 GINLLHELVQAHYPGD--VVFTTAASDMETVSEAVRCGVFDYLIKPIAYE----RLGQTL 118 G LL L Q + ++ TA + V A++ GV D + KP + R+ Q L Sbjct: 65 GQELLENLRQQEKWRELPIILVTANAHRGLVDAALKYGVSDIIAKPFNSKTLQARVLQAL 124 Query: 119 TRFRQRKHMLESIDSASQKQIDEM 142 TR +R + ++ AS + M Sbjct: 125 TRRHKRAKSVPTLPIASNAAVTPM 148 >UniRef50_A6G241 Response regulator receiver protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G241_9DELT Length = 239 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT L +LIV+DETP + G A + A R ++ R + +ILLD + Sbjct: 1 MTRTLRVLIVDDETPARRRLRRACERVAGVEVAGEATDAATLRRVLTRDRADVILLDIAM 60 Query: 61 PDGRGINLLHELVQAHYPG--DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 P GI L E PG ++FTTA S E EA R DYL+KPI+ L L Sbjct: 61 PGLSGIELARE------PGLPPIIFTTAHS--EHALEAFRVDAVDYLLKPISEHALALAL 112 Query: 119 TRFRQR 124 R R R Sbjct: 113 ARVRAR 118 >UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD13_CARHZ Length = 205 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 18/181 (9%) Query: 46 IERF---KPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF 102 IE+F KP ++L+D ++P G++ + + + ++ T + + + G Sbjct: 37 IEKFVREKPDMVLVDYHMPALDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGAS 96 Query: 103 DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPL 162 D+ +KPI L + R + M+E I+ + +K+ + F L GI+ Sbjct: 97 DFALKPIKAPDL---IARLKVHARMIE-INRSQEKKDQDGF-----------LAKGINKK 141 Query: 163 TLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRI 222 T N + + KE T E + + + ++ T RYL Y + ++ E +G++GRP+ Sbjct: 142 TFNLIVEYLKEQKEPQTIEEITEGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKNK 201 Query: 223 Y 223 Y Sbjct: 202 Y 202 >UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding domain n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C34 Length = 234 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 10/186 (5%) Query: 9 IVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINL 68 IVED T + E ++ +PGF LAG A+A I + +P ++++D LPD G+ L Sbjct: 21 IVEDHTFMQEGMKVFVESLPGFECAWLAGTAAEAVEKIAQDEPNVLIVDITLPDRSGLEL 80 Query: 69 LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 + +L H V+ + + A++ G Y++K ++ LTR Q Sbjct: 81 IKDLHATHNQMHVLVVSMHEEDLYAERALKAGAKGYIMKNAPHDVFESALTRVSQ----- 135 Query: 129 ESIDSASQKQIDEMFNAYARG-EPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 + S K D + A++ G +P+ + +G+ L+ ++F+ G + VA+++ Sbjct: 136 -GGVAVSHKMTDRVLMAFSSGVQPRPD--SGLHNLSDREF-EVFQHLGEGKSTHQVAESM 191 Query: 188 TISRTT 193 IS T Sbjct: 192 RISPKT 197 >UniRef50_C1PB78 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PB78_BACCO Length = 234 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE E IR ++ A + QA+ M+E L LD LP Sbjct: 1 MNILIVDDEILELEQLVFLIRQRYPEWELFEAEDAVQAKKMLENHPIDLSFLDIRLPGES 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L ++ +Y + V TA +D + A++ VFDYL+KPI E L + L + + Sbjct: 61 GLELC-AYIRENYKSECVMITAHADFQYAQHAIKLHVFDYLVKPIITEELYRMLENYVNK 119 Query: 125 KHMLESIDSASQKQI 139 +E + S Q+ I Sbjct: 120 YGYIEGLSSDIQEVI 134 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 77/144 (53%), Gaps = 5/144 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +L+V+DE + ++ + + G+ + G++ A+ I++ +I LD +LPDG Sbjct: 2 LNILVVDDEKNIQDLMKDILTD-EGY-YVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGE 59 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++LL + + VV + +++ +A++ G FD+L KP++ E + T+ + ++ Sbjct: 60 GLDLLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQ 119 Query: 125 ---KHMLESIDSASQKQIDEMFNA 145 K LE +KQI+ + N+ Sbjct: 120 IKVKQSLEYFKEKEEKQIEIIGNS 143 >UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=Proteobacteria RepID=A6T4B6_JANMA Length = 481 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++LIV+DE M + R + G S++ ++ A +++ + LI+LDN LP Sbjct: 44 SILIVDDEPG---MRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKS 100 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L E+ + DVV TA +D+ET A+R G D+L+KP ++ + R R Sbjct: 101 GVDWLQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRCFDR 160 Query: 125 KHM 127 H+ Sbjct: 161 AHL 163 >UniRef50_C6D7S6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7S6_PAESJ Length = 550 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 7 LLIVEDETPLAE-MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 LL+V+DE + E + E GFS++ AGN +A +IE+ +P +++ D +P G Sbjct: 4 LLLVDDEPEVTEGLMMEIDWESCGFSEVKTAGNGKEATELIEKMEPDVLITDISMPYMNG 63 Query: 66 INLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 + L + V+ YP VV T + E +A+ V +YL+KP + +L +T+ + +QR Sbjct: 64 LE-LADWVKKMYPITRVVILTGHDEFEYAKQAINLQVENYLLKPFSGSQLTETVLQVKQR 122 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 45/86 (52%) Query: 36 AGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSE 95 AG+ + I FKP + LD LPDG G+ L+ + + +VV TA D++T Sbjct: 32 AGDSWEGLKRIALFKPQAVFLDMRLPDGNGLQLIQRIKEMDKDLEVVLMTAYGDIKTAVT 91 Query: 96 AVRCGVFDYLIKPIAYERLGQTLTRF 121 A++ G FDY+ KP + + LTR Sbjct: 92 AIKNGAFDYINKPFELDEVQIILTRI 117 >UniRef50_A6QCV7 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCV7_SULNB Length = 229 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T L LL VED+ L E ++ P F+++ A + +A M + KP L+++D +P Sbjct: 4 TKVLNLLYVEDDEALREQFLRVLK--PAFNEVYEAADGVEAYEMYQTCKPDLMVVDINIP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ L+ ++ + ++ +A SD E + +AV G+ Y+IKP+ Y+ L +L + Sbjct: 62 KMSGLELIEKIRKEDENTPIMILSAYSDREKLLKAVTLGLSQYMIKPVPYKELLTSLEKM 121 >UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V332_9AQUI Length = 274 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T L +L VED + + ++ F I+ A N + + E+ KP LI+ D +P Sbjct: 8 TKNLKVLYVEDSPEVRQSTLLLLKEF--FDNIITASNGKEGLELYEKGKPDLIITDINMP 65 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + GI ++ EL + ++ T+A S++E + E+++ GV Y++KP+ + T+++ Sbjct: 66 EMSGIEMIKELRKKDKDIPIIITSAHSELEFLLESIKLGVDGYILKPVDLNQFINTISKV 125 Query: 122 RQRKHMLESIDSA------SQKQIDEMF 143 ++ + E D Q +DE+F Sbjct: 126 VEKVVLKEEFDKTLNLLKQYQMAMDELF 153 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 LL+VED +A ++ Y+ P I + G A + P LILLD LPD G+ Sbjct: 13 LLMVEDTASVAALYRSYL--TPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGM 70 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++L+ + + + VVF TA ++T EA+R G D+LIKP +RL T+ ++ Sbjct: 71 DVLYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKAS 130 Query: 127 MLES 130 L++ Sbjct: 131 KLKN 134 >UniRef50_B9ZLS8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLS8_9GAMM Length = 1301 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 7 LLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+VED+ A++ I R +P +Q+ +A LA AR + +L+D LPDG G Sbjct: 3 VLVVEDQAADADLQRRSIERGVPS-AQVAVADTLAGAREALADQTFDCVLVDLRLPDGNG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAY-ERLGQTLTRFRQR 124 ++L+ EL P V+ T + ETV A R G DYL K Y ERL + R Sbjct: 62 LDLVAELRDQGRPEAVIVLTGHGEQETVIAAFRSGADDYLTKAEGYLERLPARIVDARSY 121 Query: 125 KHM 127 +++ Sbjct: 122 RNL 124 >UniRef50_B8FR15 Two component transcriptional regulator, LytTR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FR15_DESHD Length = 251 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +LIVED+ + + + IP + AGN +A + +P +I++D LP Sbjct: 3 LRVLIVEDDANMRLILKRALFGIPNVEVVGEAGNGTEAVGLAAELEPHVIIMDVDLPGKD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ E++ + DV A E ++EA FDYL+KP ERL QT+TR ++ Sbjct: 63 GVEASREIL--NISPDVFLVYATGHPEYMAEAFEMYAFDYLVKPYRMERLTQTITRIQK- 119 Query: 125 KHMLESIDSASQKQIDEMFNA 145 ++ES Q+ +E N+ Sbjct: 120 --LIESKGKGIQQSREEGSNS 138 >UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio sp. FW1012B RepID=D2L8S7_9DELT Length = 467 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+++D+ L E +R + + AG+L + R+ + + ++LLD LPDG G+ Sbjct: 4 ILLIDDDAILRETFGGLMRRL--GHTLDWAGSLEEGRLALVHGRTDVVLLDLRLPDGYGL 61 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 +++ E+ A +V+ T D E + A++ G +DY+ KP+ R+ LTR Sbjct: 62 DMMPEIRAAPGSPEVIIVTGQEDPEGAALAIKSGAWDYIQKPLTPHRVTLPLTR 115 >UniRef50_C0DAU7 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAU7_9CLOT Length = 495 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 4/134 (2%) Query: 8 LIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +I++DE + E YI G + G+ A A +P +IL D LPD G+ Sbjct: 8 MIIDDEKLIREGLVTYIDWAALGVEVCAVCGDCAGAVRAAALHRPQIILADICLPDASGL 67 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L ++ + +F ++ S+ + +AV+ G FDYL+KPI + L + R ++ Sbjct: 68 ELFRQIRDCGLKCEAIFISSYSEFQYAQQAVKLGAFDYLLKPIEADVLLDCVRRCAEK-- 125 Query: 127 MLESIDSASQKQID 140 + S + S K D Sbjct: 126 -IRSTEDGSGKNCD 138 >UniRef50_B3PDX5 Response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDX5_CELJU Length = 225 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 61/127 (48%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ +L++ED+TPL E A + PG + L++A + R L++ D LPDG Sbjct: 15 PVRVLLLEDDTPLRERFARILGDWPGGELVAACATLSEALDRLHRQPVDLLMADLNLPDG 74 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI + L + + D + +A +D ETV A+ G YL+K L + + R Sbjct: 75 HGIEAIQLLRRLYPEADAMVISALADDETVLGAIEAGAVGYLLKDADSLELVEAIQELRA 134 Query: 124 RKHMLES 130 + + S Sbjct: 135 GRSPISS 141 >UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clostridia RepID=A4XID8_CALS8 Length = 1066 Score = 58.5 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 9/113 (7%) Query: 36 AGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSE 95 +GN +A M++ ++P ++ LD LPD G+ LL ++ + VV TA S+ E V E Sbjct: 33 SGN--EALRMVKEYRPDVVTLDITLPDMSGLELLKKIKEVSSSTQVVMITAISNHEVVKE 90 Query: 96 AVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESI-------DSASQKQIDE 141 A++ G +Y+ KP + E++ + L + + + I +S QK++ + Sbjct: 91 AMKVGATNYITKPFSREKVEEVLKKVEKNIQAMSQIERNMTNEESIGQKELSQ 143 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIP----GFSQILLAGNLAQARMMIERFKPGLILLDNY 59 P +L+ +DE E+ A R I GF+ + A N A+A + E+ KP ++L D Sbjct: 3 PYRVLLADDEE---EIRAGISRKIDWTGLGFALVGEAENGAEALELSEQLKPDVVLTDIK 59 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P G+ L L Q+ +V + D E +AV GV +Y++KPI +G+ LT Sbjct: 60 MPFMDGLELCRRLRQSLPAAKLVVFSGFDDFEYARQAVGMGVSEYIMKPINAPEMGEVLT 119 Query: 120 RFRQR--KHMLESID 132 R R++ K +E D Sbjct: 120 RLREQLDKQRMERRD 134 >UniRef50_UPI000174558D two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174558D Length = 464 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI+EDE LA + R + GF + LLA + AQ + R +P L++LD LPD G+ Sbjct: 4 ILIIEDEAALASAIGQLTRRM-GF-EPLLAASAAQGLEQLRRRRPDLVVLDIGLPDRSGL 61 Query: 67 NLLHEL--VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 +L E+ + A P V+ TA ++ EA + G YL+KP+ L ++L Q Sbjct: 62 EVLQEIRSIDADLP--VLIITAHGHLQNAVEAKKRGASGYLVKPLDLRELEKSLQVLLQS 119 Query: 125 K 125 + Sbjct: 120 Q 120 >UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS9_9FIRM Length = 515 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 14/143 (9%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQ-----ILLAGNLAQARMMIERFKPGLILLDNY 59 + +L+VEDE IR I + Q I A N + E++KP L+L D Sbjct: 1 MKVLVVEDEFY---ARKAMIRQIKKYDQDGLFEISEASNGEEGWEFCEKYKPELVLTDIR 57 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P GI LL E+ V+ +A SD E A+ G DYL+KPI L + L Sbjct: 58 MPKMDGIQLLQEIRNNELEIKVIILSAYSDFEYARSAIVNGASDYLLKPIDDTALTECLN 117 Query: 120 RF------RQRKHMLESIDSASQ 136 +F +++ +L D A+Q Sbjct: 118 KFVTQHKIERKEALLSRKDMATQ 140 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 ++V+DE ++E+ + + S I A ++AR I+ L LLD LPDG GI+ Sbjct: 4 IVVDDEKNISELLSILLSEYGIESDI--ASTYSEARSFIQEKYYDLALLDLRLPDGSGID 61 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 +L ++ + + +VV TA + ET EA++ G +DY+ KP Sbjct: 62 ILKQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKP 102 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + E + + G+S ++ A + +A + +P +LLD +P+ GI Sbjct: 5 VLVVDDEKSVCEALKDVLEE-SGYS-VVTATSGREALEKVNLIRPHAVLLDIRMPEMDGI 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 +L L + H V+ TA SD +T A+R G F+Y++KPI + L TL + Sbjct: 63 KVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEK 116 >UniRef50_UPI000178A004 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A004 Length = 514 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 PL +LIVEDE PL + + G I A N ++A + P +++ D +P Sbjct: 5 PLGVLIVEDEIPLRQELRLFPWEACGAEWIGEASNGSEAMQLCAERTPDVVITDITMPVM 64 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK-PIAYERLGQTLTRFR 122 GI L+ EL + H ++ T SD V EA+R G +Y++K + E L Q + + R Sbjct: 65 DGIALIRELRKRHPHVQIILLTCHSDFHYVQEALRLGALEYILKVSLEEEELKQAMDKVR 124 >UniRef50_B9Z3N9 Two component transcriptional regulator, LuxR family n=2 Tax=Chromobacterium group RepID=B9Z3N9_9NEIS Length = 217 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 27/197 (13%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLI---LLDNYLPD 62 ++ IV+D+ + E A I +Q + A A A+ + ++ G I +LD +P Sbjct: 11 SVFIVDDDPAVRESLAMLI-----MAQGMRAVTFANAQEFVRDYREGDIGCMILDIRMPQ 65 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR-- 120 G+ L L+Q +VF T D+E S A R G D+L KPI RL +L R Sbjct: 66 MSGMALQELLIQREITIPIVFITGHGDIEQCSRAFRAGAIDFLTKPIDTSRLIDSLRRGI 125 Query: 121 ---FRQRKHMLESID--------SASQKQIDEMFNAYARGEPKDELPTGID--PLTLNAV 167 +Q KH E+++ S ++++ EM A G E+ ++ P T+ A Sbjct: 126 RLSIQQHKHETETLEVMQRLSRISGREREVLEM---VADGLSSKEIARAMELSPRTVEAH 182 Query: 168 R-KLFKEPGVQHTAETV 183 R LF + GV A+ + Sbjct: 183 RANLFSKLGVDSLADLI 199 >UniRef50_Q47FN6 Response regulator receiver n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FN6_DECAR Length = 130 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++++IV+D + + +R + + A N A ++ER KP + +D +P+ Sbjct: 6 ISIIIVDDNDMMRGILRAMLRG-EEYDVVGEARNGVSAIDLVERLKPDIACMDVMMPEKN 64 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT----R 120 GI L E+ AH +V+ T+ SD TV EA++ G ++IKP R+ TL R Sbjct: 65 GIEALCEIKAAHPDTEVIMVTSNSDPGTVQEAIQNGASGFIIKPFNAARVLDTLEKVSGR 124 Query: 121 FRQRK 125 RQ+K Sbjct: 125 VRQKK 129 >UniRef50_Q222P9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Burkholderiales RepID=Q222P9_RHOFD Length = 467 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +L+V+DE L ++ A + I + A + QA M+ R + L D +PDG Sbjct: 4 LNVLVVDDEPALRQILAAAV--IKAGYSVEQANGVKQAATMLSRGDFDVALCDIKMPDGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR---- 120 GI L+ A + T + +ET EA++ G DY+ KP+ YE + L++ Sbjct: 62 GIELVRNCRAAGIETTFIMVTGFASIETAVEALQAGASDYITKPVRYEEVAHRLSQIDAL 121 Query: 121 --FRQRKHMLESIDSASQKQI 139 R+ L + S S ++ Sbjct: 122 RGLREENKALRKVVSDSSPKL 142 >UniRef50_A3ZMD1 Sensor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMD1_9PLAN Length = 638 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 53/101 (52%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI+EDE A + + ++++A +L +AR I + P L L+DN LPDGRG+ Sbjct: 7 ILIIEDERSHAILMSRAFNTFSTQFEVIIAASLEEARNEIAQRCPDLALVDNMLPDGRGV 66 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK 107 +L +V T+ D T EA++ G DY++K Sbjct: 67 EMLSHRRPEDQQFPIVVMTSYGDERTAVEALKRGAIDYVVK 107 >UniRef50_B9ZLA8 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLA8_9GAMM Length = 437 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 6/106 (5%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE P+ ++ H GF Q+ LA +LA AR + P L+L+D LPDG GI Sbjct: 4 ILLVDDEAPIRRAVRRFLEHH-GF-QVRLAEDLASARAALREELPDLMLVDLRLPDGEGI 61 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 LL E H P V+ T+ AS V+ A++ G DY+ KP ++ Sbjct: 62 ELLAE--AGHTP-TVIMTSYASVPSAVT-AMKEGAADYIAKPFDHD 103 >UniRef50_Q28LI0 Two component transcriptional regulator, LuxR family n=3 Tax=Alphaproteobacteria RepID=Q28LI0_JANSC Length = 214 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 57/113 (50%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIVED +A+ + G + +AG+L + ++ KP ++L+D LPDG G Sbjct: 5 TVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQLLFDLKPRVLLVDIGLPDGSG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 ++ + QA + D + + D V EA+R G Y++K +G+ + Sbjct: 65 VDAVRAAAQADWTVDALVISIFGDEARVIEAIRAGAKGYVLKGGDLSHIGEDI 117 >UniRef50_B2J497 Sensor protein n=3 Tax=Nostocaceae RepID=B2J497_NOSP7 Length = 609 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 ++ + +L+VE++ P A++ Y+R + G+ Q+ N A+ + + P +IL+D YLP Sbjct: 485 SSSVDVLLVENDLPNADLMQIYLRKL-GY-QVTWVKNAAEMWEALTQLDPAVILMDVYLP 542 Query: 62 DGRGINLLHELVQ-AHYPGDVVFTTAASDMETVSE-AVRCGVFDYLIKPIAYERLGQTLT 119 DG G+NL+ +L + Y V A M+ E + GV DY+ KPI L + Sbjct: 543 DGNGLNLVRQLREHEQYQTIPVIVQTAMAMKGDRETCLTAGVNDYISKPIDLPLLASLVA 602 Query: 120 RFRQ 123 ++ + Sbjct: 603 KYSK 606 >UniRef50_A5CX51 Two-component response regulator n=5 Tax=Bacteria RepID=A5CX51_VESOH Length = 191 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++LI++DE AE + + + ++LA N QA+++I+ L+++D ++P G Sbjct: 9 SILIIDDENINAETMMDILEDVN--YHVVLAANANQAKIIIKDQSFDLVMMDVWMPGQDG 66 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI 109 ++LL E QA + +V + ++ + V +A++ G D+L KP+ Sbjct: 67 MSLLEEWTQADFSTPIVMMSGHAEHQDVVKAIKFGAVDFLKKPL 110 >UniRef50_B0MQP5 Putative uncharacterized protein n=2 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQP5_9FIRM Length = 222 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+L+VED + ++++ + + +S +L A + AQ R M+ L++LD LPDG G Sbjct: 3 TILLVEDNPHIMKINSSCL-SMEDYS-VLEAADAAQCRYMLSNNDVDLVILDIMLPDGDG 60 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 I+L E ++A Y ++F +A S+ + + A+R G DYL KP Sbjct: 61 ISLCRE-IKAKYDIPILFLSALSENDDIITALRAGGDDYLPKP 102 >UniRef50_B5IGK2 Response regulator receiver domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IGK2_9EURY Length = 194 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 6/117 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK-PGLILLDNY 59 M L ++I++D LAE+ +Y+ + GF+ + +A N A ++E+ K +ILLD Sbjct: 1 MNGSLNVVIIDDNKELAEVIKQYLSN-RGFN-VKIAENARDAMSILEKSKRVDVILLDLM 58 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 L D G+ +L + ++ T D+ TV EA++ G DYL+KP RLG+ Sbjct: 59 LKDVHGLEMLKSIRSHSKQVAIIIITGIKDLNTVIEAMKAGADDYLVKPF---RLGE 112 >UniRef50_B0TBI1 Sensory transduction protein lytt n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TBI1_HELMI Length = 238 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + ++I EDE PL+ EY+ R A N + + + +P LI LD +P+ Sbjct: 1 MKVMIAEDE-PLSREELEYLLRQAEDVELCPSARNGKELLRLQKEHQPQLIFLDIEMPEL 59 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + +L +A P ++FTTA + EA DYL+KP+ ERL ++L R RQ Sbjct: 60 NGVEAVRQLAEASAPPLIIFTTAYE--QYAVEAFGLRALDYLLKPVDEERLFESLQRARQ 117 Query: 124 R 124 R Sbjct: 118 R 118 >UniRef50_A8ERR4 Two-component response regulator n=2 Tax=Campylobacteraceae RepID=A8ERR4_ARCB4 Length = 232 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L VEDE + E ++H+ F ++L A ++ +A + KP LI+ D + D Sbjct: 10 SAFCVLYVEDENGIRSNIEEILKHL--FKEVLSATDVNEAYNKYLQNKPDLIITDIKMKD 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI LL ++ + ++ T+A +D++ + EA + Y++KPI ++L + L F Sbjct: 68 KTGIELLKKIRETDSKIRIIITSAYTDLDYLLEATELHLIKYIVKPITNDKLMEALESF 126 >UniRef50_B1Y8I8 Two component transcriptional regulator, Fis family n=97 Tax=Burkholderiales RepID=B1Y8I8_LEPCP Length = 240 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + + E + F + LA N QAR ER +P L+LLD ++PD G Sbjct: 3 NILVVDDEMGIRALLQEILTDEGHFVE--LAENAVQARAARERLRPDLVLLDIWMPDVDG 60 Query: 66 INLLHEL-VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 I LL E A V+ + ++T EA + G +L KPI ++L Sbjct: 61 ITLLKEWGTTAQLGMPVIMMSGHGTIDTAVEATKYGAMAFLEKPITLQKL 110 >UniRef50_D0LSR9 Two component transcriptional regulator, LytTR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LSR9_HALO1 Length = 240 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+DE P + A + IP I +A + AR ++ + P ++LLD ++P+ Sbjct: 1 MRVLVVDDEAPARQRLARMLARIPEVGDIAVADSAVAARALLRQSPPEVVLLDIHMPEID 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL EL A P V+F TA + A DYL+KP+ RL + L R R Sbjct: 61 GLTLL-ELEPAMPP--VIFVTAYE--QHAVRAFELAAVDYLLKPVNQARLEKALRRAR 113 >UniRef50_Q1IUM5 Transcriptional regulator, LytR/AlgR family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUM5_ACIBL Length = 317 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 5 LTLLIVEDETPLAEMH-AEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L +IVEDE PLA M + + PG + A N+ +A I + +P +I LD LP G Sbjct: 63 LRAVIVEDE-PLATMKLKKLLDGEPGIRVMGHAANIDEAVAQIRKLQPNVIFLDVQLPGG 121 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G +L L +A+ P ++FTTA + +A DYL+KP ERL + + + R Sbjct: 122 SGFEVLDRLPEANRPC-IIFTTAYD--QYAIKAFDLHAADYLLKPFDQERLHRAIEKAR 177 >UniRef50_C6W416 Two component transcriptional regulator, LytTR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W416_DYAFD Length = 257 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 LI++DE ++ +++H A N ++A + I + +P ++ LD +P+ G Sbjct: 6 LIIDDEVLARDVIRTFVQHDHSIEITDEAANGSEAVVKILQHRPDVVFLDIQMPELDGFA 65 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 +L E+ H P VVFTTA + A DYL+KP R Q+L R ++R Sbjct: 66 VLREVWPHHQPF-VVFTTAFD--QYALRAFEVNAIDYLLKPFDEIRFHQSLGRLKER--- 119 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF 171 + SQ +I+E+ N R E KD+ + L + K++ Sbjct: 120 ---LSQKSQPRIEELVNNLLR-EQKDKEENYLQRLLVKEAGKMY 159 >UniRef50_C4G759 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G759_ABIDE Length = 499 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP----GFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 + L +VEDE P+ ++H+P G ++ A + +A ++ +KP +I+ D + Sbjct: 2 IKLQVVEDEAPI---RNGILKHVPFTELGVDEVKSASSAEEALEVMSEYKPDIIVSDIRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI L ++F + SD E ++ A+ G Y+ KPI E L ++ + Sbjct: 59 PGMGGIELCKTYKNKAKDCQIIFISGFSDKEYLTTAISLGAVSYIEKPIDIEELKSSIKK 118 Query: 121 F--------RQRKHMLESI 131 RQRK++L S+ Sbjct: 119 AVDAVNKLNRQRKNLLHSV 137 >UniRef50_C6D796 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D796_PAESJ Length = 248 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE + + + + + P S I A N +A ++RF P + + D +P+ Sbjct: 1 MKILIVDDEPLILKGLVKIVEEVAPAGSDICSAFNAWEALETMKRFMPDVTITDINMPEK 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G L+H+ + T + E V +A+R GV DYL+KP+ + + L+R ++ Sbjct: 61 NGFELIHDARLEGLCDRFIILTGYDEFEYVRQALRSGVVDYLLKPLDKKEIAGLLSRVKE 120 >UniRef50_C1A9Q4 Putative response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Q4_GEMAT Length = 183 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 5/137 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ +L+V+DE L E+ ++ + G+ ++ AG++ +A ++ +P L+L D LP Sbjct: 2 PMYVLVVDDEPALREVLSQRLTSW-GY-RVATAGDVQEAETLLNTSEPDLVLSDVVLPGL 59 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL--TRF 121 G++LL + VV TA ++++ EA++ G D+L KPI L L R Sbjct: 60 SGLDLLRRFKARNAALPVVLITAHANVDAAVEAMKAGATDFLTKPIDTATLRAVLESVRV 119 Query: 122 RQR-KHMLESIDSASQK 137 QR + S+D A Q+ Sbjct: 120 DQRERKAARSLDEALQE 136 >UniRef50_Q1H1W5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1H1W5_METFK Length = 472 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L +L+VEDE A A+ ++ G+ A L R ++ + P +ILLD LPDG Sbjct: 21 LRVLLVEDEVIFARAVAKRLQQ-AGYD-CEHAATLQAGRELVRQMAPDMILLDMRLPDGN 78 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++LL ELV V+ TA ++ A++ G DYL KP+ + L T+ + + Sbjct: 79 GLDLLPELVAKGI--SVISMTAYGEVADAVYAMKLGATDYLKKPVDLDELLLTIEKAQAA 136 Query: 125 KHMLESIDSASQKQI 139 + +D + Q+ + Sbjct: 137 TRLKHHLDYSRQRNM 151 >UniRef50_B3E2Y5 Two component transcriptional regulator, LytTR family n=1 Tax=Geobacter lovleyi SZ RepID=B3E2Y5_GEOLS Length = 251 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +T+ +++DE P + +P + A + ++ + KP L+ LD +P Sbjct: 3 ITVFLIDDEAPARRELRYLLEQLPELEIVGEAATATEGLRLLRQLKPRLLFLDIQMPGLT 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L L + VVF+TA S +A FDYL+KP+ ERLG+T+ + R++ Sbjct: 63 GIELSQILQELPERPLVVFSTAYSQFAV--DAFNLEAFDYLLKPVTLERLGKTIDKVRKQ 120 >UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=cellular organisms RepID=A1WBW7_ACISJ Length = 502 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++L+V+DE L ++ E G+ ++ A ++ AR ++ K +++ D LPDG G Sbjct: 7 SILVVDDEPDLRTLY-ELTLLREGY-RVETAASVDDARQQLQTQKFDVVITDMRLPDGFG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI 109 ++LLH+L V TA E EA+R G FDYL KP+ Sbjct: 65 MDLLHDLRSQQRRERCVVMTAYGSAENAVEALRAGAFDYLTKPV 108 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGN--LAQARMMIERFKPGLILLDNYLPDG 63 T+L+V+DE + + E + ++ GN + QA+ + P +I+LD LPD Sbjct: 3 TILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAK----KVSPDVIILDFMLPDL 58 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI +L +L Q V+ TA + + T EAVR G DY++KP + T+ + + Sbjct: 59 NGIEVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICE 118 Query: 124 RKHM 127 + H+ Sbjct: 119 KAHL 122 >UniRef50_B8KBX1 Transcriptional regulator n=4 Tax=Vibrio RepID=B8KBX1_VIBPA Length = 263 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 9/135 (6%) Query: 4 PLTLLIVEDETPLAEMHAE--YIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 PLT +I +DE PL H + P LA N QA +IE +P + LD +P Sbjct: 5 PLTAIIADDE-PLLRFHLDKALADVWPELEIKGLAENGEQALELIEAHQPTIAFLDIRMP 63 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ L++ + VVF TA E +A DYL+KP++ RL Q +TR Sbjct: 64 KCDGMQAAKRLMENNSATTVVFVTAYD--EYAVQAFENNAADYLLKPLSETRLEQCVTRL 121 Query: 122 RQRKHMLESIDSASQ 136 +Q+ S+D+ +Q Sbjct: 122 KQKF----SVDATAQ 132 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIV+DE + E++ G+ I AG+ +A ++ F P LILLD LP+ G+ Sbjct: 7 ILIVDDEETIRLSVREFL-DAQGYEAIA-AGSCEEALEKMDTFMPDLILLDLRLPNINGV 64 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ ++ + +V T +++ E +R G +DYL KP +RL + + +R+ Sbjct: 65 ELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQG 124 Query: 127 MLESIDSASQKQ 138 + + + +KQ Sbjct: 125 LRQEVLEIKEKQ 136 >UniRef50_C7I3C8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thiomonas intermedia K12 RepID=C7I3C8_THIIN Length = 514 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 5/118 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 A + +LIV+DE L E++ + H G+ QI +A +AQAR + R + L+L D LPD Sbjct: 4 ADVRILIVDDEPDLRELYTLSLVH-EGW-QIDVAETVAQAREQLVRRRYALMLTDMRLPD 61 Query: 63 GRGINLLH--ELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 G G+ LL E + +V T S V+ A++ G FDYL KP+ L +T+ Sbjct: 62 GEGLELLRWLEAQPDRFEKSIVITAYGSAGNAVA-ALKAGAFDYLSKPVDLAALRRTV 118 >UniRef50_B1Y636 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y636_LEPCP Length = 465 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI+EDE LA A Y+ + ++ +AG + ++E+F+P +++LD+ LP G Sbjct: 4 AILIIEDEATLARNLAIYLERLG--DEVRVAGRAEEGLALLEKFRPDIVILDHNLPGMTG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 + L + VV T E EA++ G D+L KP Sbjct: 62 LEALSRIRAIDADAQVVMVTGYGSTELAVEAMKAGAADFLTKP 104 >UniRef50_Q3JAP9 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=Q3JAP9_NITOC Length = 470 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 8/113 (7%) Query: 6 TLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPD 62 TLLI+EDE L E RH G ++ A L+QAR ++ + F P L+L D LPD Sbjct: 4 TLLIIEDEILLG---TELSRHYQSGGWEVEWATTLSQARSILLEQHFDPLLVLSDMSLPD 60 Query: 63 GRGINLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERL 114 G ++L+ E VQ +P + + T + A+R G +D+L KP E L Sbjct: 61 GNALDLI-EAVQGQHPHAEWLLLTGYGSVPDSVRALRLGAYDFLEKPCELEHL 112 >UniRef50_B6WPS9 Sensor protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WPS9_9DELT Length = 380 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE AE A+ + + G + +AG+ A M+ R + L+ LD LP Sbjct: 1 MRVLIVDDEQAFAEPLAQRL-ELRGI-EAAVAGDAETALGMLSRQEWDLVFLDVCLPGMD 58 Query: 65 GINLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL +L+Q H P DVV + A++M +A+R G ++L KP++ + + + + R+ Sbjct: 59 GVSLL-KLLQEHEPRPDVVMLSGATEMSQAVKAMRRGALNWLAKPVSLDAVLEECRKARE 117 Query: 124 R 124 R Sbjct: 118 R 118 >UniRef50_UPI0001788E64 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788E64 Length = 539 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 LTLLIVEDETPLAE-MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L ++IV+DE L + + ++ G + A N QA+ + E+ + LIL D +P Sbjct: 2 LNMMIVDDEKLLTDSLKSDVDWQSLGIEAVFTAYNARQAKEVFEQERVDLILCDIEMPQE 61 Query: 64 RGINLLHELVQAHYP-GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ LL + +YP + VF T ++ + A++ G FDYL+KPI + L Q + + Sbjct: 62 SGLELL-AWARNNYPQTETVFMTCHAEFKLAQRALKLGSFDYLLKPIPGDELQQVIGK 118 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 45/75 (60%) Query: 53 LILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 L++LD LP GI L +L A + G+V+ TA +DM+T +A+R G D+++KP + Sbjct: 59 LVILDIALPGKAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRID 118 Query: 113 RLGQTLTRFRQRKHM 127 ++ ++ R +R + Sbjct: 119 QILNSIHRSTERARL 133 >UniRef50_B5ELA2 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ELA2_ACIF5 Length = 451 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 2/113 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 LIV+DE + E+ ++ + G + + A +LA+AR + P L L D LPDG G++ Sbjct: 11 LIVDDEPGIVELLGITLQGM-GIA-VTGAYSLAEARARLAEGAPSLCLSDLRLPDGSGLD 68 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 L+ L + + V TA S + EA++ G FDY+ KPI RL + +++ Sbjct: 69 LVRRLRELYPQVPVAVITAYSSADGAVEAMQAGAFDYMAKPIELARLRRLISQ 121 >UniRef50_D2QJ93 Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJ93_9SPHI Length = 224 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 5 LTLLIVEDETPLAEMHAE-YIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + L+VEDE PLA E YI + + +A ++ + L+ LD LP Sbjct: 2 MNCLVVEDE-PLARQVVETYIHQSADLRLVKSCTHAFEAFEVLTAYPVDLMFLDIELPSL 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+ + L Q P ++FTTA SD E+ DYL+KPI YER Q++ +F + Sbjct: 61 TGIDFIRRLKQ---PPALIFTTAYSDYAV--ESYELEAVDYLLKPITYERFKQSVDKFFK 115 Query: 124 R 124 R Sbjct: 116 R 116 >UniRef50_A6GL08 Two-component response regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GL08_9BURK Length = 231 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 13/200 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +T T+LI ED ++ M A+ I + S+I++ ++ +AR + + +P L++ D L Sbjct: 14 LTDKPTILIAEDHPMISIMLADMIDQLVNHSEIIVVESMEKARAI--QVQPDLVIADLDL 71 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD +G+N ++ + + D EA R G F Y+ K Y L + L Sbjct: 72 PDSKGVNTINTFAVLFPQCPKLICSGVLDKNLAREAERAGYF-YVNKASTYPELLRALQN 130 Query: 121 FRQRKHMLESIDSASQKQIDEMF-NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 +L+ + +K +E N YA G K PLT V ++ ++ + Sbjct: 131 LLIEAGVLDEVPKGVEKAANEYHSNIYAPGSDK--------PLTWKQV-EIMRKTAEGLS 181 Query: 180 AETVAQALTISRTTARRYLE 199 A+ VA+ + IS T R +++ Sbjct: 182 AKEVAREMDISPDTVRGHIK 201 >UniRef50_C1D4M1 Putative PAS/PAC sensor protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4M1_LARHH Length = 834 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 20/156 (12%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIV D+ ++ I I ++IL A + A+A M+ +P LILLD LPD G Sbjct: 20 TVLIVNDDRSSRQICRSAIEEI---AEILEAASGAEALAMVAAGRPDLILLDASLPDMDG 76 Query: 66 INL---LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE----RLGQTL 118 +L L E QA + VVF T +D + + G D+L KP+ R+G L Sbjct: 77 FDLACRLRERPQAEWI-PVVFLTTLTDTASHRRGLELGAVDFLSKPVDSSILRLRIGNLL 135 Query: 119 TR---------FRQRKHMLESIDSASQKQIDEMFNA 145 R ++++ H +AS + ++ +FNA Sbjct: 136 EREHLRIVALEYQKKLHETLMAQTASTRMLEAIFNA 171 >UniRef50_A6BZU5 Transcriptional regulatory protein zraR n=2 Tax=Planctomyces RepID=A6BZU5_9PLAN Length = 459 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++LIVEDE + AE++ G+ + + A +A+A + + + D LPDG G Sbjct: 14 SVLIVEDEEVIRTSLAEFLTS-EGY-ETMQASTVARALELARDRDFNVAICDVQLPDGDG 71 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 I LL L V+ TA + +E A + G FDYL+KP+ ++ L L R Sbjct: 72 IELLRRLQNIKPSIFVLIITAYATVENTISAFKAGAFDYLVKPVIFDDLSHKLNRL 127 >UniRef50_C7IBY4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IBY4_9CLOT Length = 255 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 7 LLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 LLI +DE L + Y + GF + A N QA IE+ ++L D +P G Sbjct: 4 LLIADDEPRLRNGISNYFPWNETGFEVLYEASNGKQALEFIEKNHVDVVLSDIRMPIMSG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 I+L E+ V+F T D E EA+ GV +Y++KP Y L + ++ ++ Sbjct: 64 IDLAREIYNRGMIIKVIFLTGYKDFEYAKEAINYGVKNYVLKPTKYNELAEVFSKIKK 121 >UniRef50_Q0A5C4 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Gammaproteobacteria RepID=Q0A5C4_ALHEH Length = 456 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 3/115 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + ++ E ++ G+ ++ A + A AR + P L+LLD ++PD G+ Sbjct: 6 ILVVDDEQEIRDLVEEILKD-EGY-RVRTAHDGASAREAMRDPVPDLVLLDIWMPDVDGV 63 Query: 67 NLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 LL E + P VV + +ET EA R G +D++ KP++ +L T+ R Sbjct: 64 TLLKEWTEGGGPACPVVMMSGHGTVETAVEATRLGAWDFIEKPLSMPKLLLTVER 118 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P ++LIVED+ A M ++ GFS + A + A+AR ++ L+L D LPD Sbjct: 2 PHSILIVEDDLTFATMLKTWLGK-KGFS-VDTASSNARARKQLDAQPYDLVLSDLRLPDQ 59 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI LL + + Y ++ T +D+++ +A++ G DY+ KPI + L + + Q Sbjct: 60 DGIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQ 119 Query: 124 RKHM 127 K + Sbjct: 120 NKAL 123 >UniRef50_Q3J8E1 Sensor protein n=2 Tax=Nitrosococcus oceani RepID=Q3J8E1_NITOC Length = 556 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 7/131 (5%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKPGLILLDNYLP 61 P+ LL+VEDE A + ++ P + +AG+L +AR + P L ++D LP Sbjct: 13 PIHLLLVEDEESHAVLIQRVLQKHPSRQPFHVTIAGSLQEAREHLRTAVPDLAIIDIRLP 72 Query: 62 DGRGINLL-HELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP-IAYERLGQTLT 119 DG GI+LL E +P ++ TT+ D + +A++ G DY++K A+ L + Sbjct: 73 DGSGIDLLTAETGVPSFP--IIVTTSYGDEKIAVKAMKAGALDYVVKSEAAFNDLSHVVE 130 Query: 120 R-FRQRKHMLE 129 R RQ M E Sbjct: 131 RALRQWHEMSE 141 >UniRef50_B9R1S4 Sigma-54 interaction domain family n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R1S4_9RHOB Length = 452 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 27 IPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTA 86 + GFS ++ A LA AR + + P +L D LPDG G +LL E++ H +V+ TA Sbjct: 18 LEGFS-VVHATTLAAAREFLGKRVPSFVLSDIRLPDGSGADLLREVLSQHGAVPIVYMTA 76 Query: 87 ASDMETVSEAVRCGVFDYLIKPIAYERL 114 ++ E VR G DYL KP + L Sbjct: 77 YGSVDQAVELVRDGARDYLAKPFNLDEL 104 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 14/131 (10%) Query: 5 LTLLIVEDETPLAEM------HAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 + LLI++DE + E AEY GF+ A N + +I P L+LLD Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEY-----GFTVCGEAKNGEEGVSLIRSLNPDLVLLDI 55 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LP G+ +L + + + G ++ + +D + A+R GV YL+KPI E L L Sbjct: 56 RLPKLDGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDEEEL---L 112 Query: 119 TRFRQRKHMLE 129 +Q K LE Sbjct: 113 HAVKQAKETLE 123 >UniRef50_UPI0001BC60C8 two component, sigma54 specific, Fis family transcriptional regulator n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC60C8 Length = 457 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 5/143 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M A +LIV+DE EM + I G+ I LA +A+AR +I+ K +++ D + Sbjct: 1 MLADYKILIVDDEADYREMFS-LILEEKGYC-IYLAACIAEAREIIKNHKIDMVVTDLIM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 + GI LLH + + V+ TA +ET +A++ G ++Y IK L + R Sbjct: 59 KNETGIELLHWIKKYDAEIGVIIVTAYGTVETAVQAIQNGAYNYFIKSNDPGTLLLDIER 118 Query: 121 FRQRKHM-LESIDSASQKQIDEM 142 F Q K + LE +S + Q EM Sbjct: 119 FLQLKQLKLE--NSLLKNQTKEM 139 >UniRef50_A6GZR7 Two-component system response regulatory protein n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GZR7_FLAPJ Length = 250 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 20/173 (11%) Query: 4 PLTLLIVEDETPLAEMHA-EYIR------HIPGFSQILLAGNLAQARMMIERFKPGLILL 56 + ++IV+DE MHA ++R H + ++ A I++++P L+ L Sbjct: 2 KIKVIIVDDE-----MHARSFLRKFCERYHSETIEVVEECNSVEAAVRAIKKYQPDLVFL 56 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D +PD G L + ++ +++FTTA E EA++ DYL+KP + E Sbjct: 57 DIQMPDENGFEFLKYFDKINF--EIIFTTAYK--EYAIEAIKKSALDYLVKPFSKEDFNI 112 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPT--GIDPLTLNAV 167 L+RF +K++ ID K + E N + + PT G + + N++ Sbjct: 113 ALSRFMSKKNV--KIDFDRFKLLTENINNQFTDKQRIVFPTKSGFEVIQANSI 163 >UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893H5_CLOTE Length = 259 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Query: 29 GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAAS 88 S I A + +A +IE++ P +IL+D +P G++++ + + + ++ + S Sbjct: 27 NLSVIATAKDGEEAMKVIEKYHPEIILMDINMPFMNGLDVIKGIHERNKDAKIIIISGYS 86 Query: 89 DMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYAR 148 E +A+ GVF+YL+KPI Y L ++++DS S++ + + Sbjct: 87 QFEYAQKALELGVFNYLLKPINYRDFKDIL---------IKAMDSYSKRMWE--ISKIKE 135 Query: 149 GEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLE 199 G+ K E + L ++ ++K F + + VAQ IS++ R ++ Sbjct: 136 GKEKIESCKDVGNLAISYIKKNFSNNEI--SLNLVAQQFYISQSYLTRVIK 184 >UniRef50_A0LMH7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMH7_SYNFM Length = 460 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILL-AGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DETP +R + + I++ A A+ + ER +P LILLD LPD G Sbjct: 7 ILIVDDETPFRSA----LRRLLEKNHIVMEAETGAKGLEISEREEPDLILLDIGLPDMSG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + LL + VV TA ++ V A++ G FDYL+KP+ + T+ + Sbjct: 63 LELLPRFKEQRPSPTVVMITAYERIKDVVMAIKRGAFDYLVKPVDIDEFELTIQNALEHA 122 Query: 126 HMLESIDSASQK 137 + +D Q+ Sbjct: 123 GLKNEVDRLRQQ 134 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 319 5e-86 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 254 2e-66 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 250 3e-65 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 243 3e-63 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 242 6e-63 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 242 7e-63 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 242 8e-63 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 241 1e-62 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 239 6e-62 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 238 1e-61 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 238 1e-61 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 237 2e-61 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 237 3e-61 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 236 3e-61 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 236 6e-61 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 235 8e-61 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 235 9e-61 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 235 9e-61 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 235 1e-60 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 234 2e-60 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 234 2e-60 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 233 3e-60 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 233 3e-60 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 233 4e-60 UniRef50_A4SN90 Two-component system citrate/malate response reg... 233 5e-60 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 232 8e-60 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 232 8e-60 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 231 9e-60 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 231 1e-59 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 230 2e-59 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 230 2e-59 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 230 2e-59 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 229 5e-59 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 229 5e-59 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 228 1e-58 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 227 2e-58 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 226 5e-58 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 226 5e-58 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 225 9e-58 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 225 9e-58 UniRef50_C4X351 Two-component response regulator for citrate n=2... 224 2e-57 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 223 2e-57 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 223 4e-57 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 223 4e-57 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 222 6e-57 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 221 2e-56 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 221 2e-56 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 221 2e-56 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 220 3e-56 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 220 3e-56 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 220 3e-56 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 220 4e-56 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 219 6e-56 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 218 8e-56 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 218 8e-56 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 218 1e-55 UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 218 1e-55 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 218 1e-55 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 216 3e-55 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 216 4e-55 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 215 1e-54 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 212 8e-54 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 211 1e-53 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 211 1e-53 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 211 2e-53 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 210 2e-53 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 210 2e-53 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 210 3e-53 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 210 3e-53 UniRef50_B1W256 Putative two-component system response regulator... 210 5e-53 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 210 5e-53 UniRef50_C9Z825 Putative two component system response regulator... 208 8e-53 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 208 1e-52 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 208 1e-52 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 207 2e-52 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 206 3e-52 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 205 1e-51 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 204 1e-51 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 203 4e-51 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 203 6e-51 UniRef50_Q8NU70 Two-component system, response regulators consis... 200 3e-50 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 199 7e-50 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 198 9e-50 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 198 1e-49 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 197 2e-49 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 196 4e-49 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 196 4e-49 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 195 7e-49 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 194 2e-48 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 194 2e-48 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 193 3e-48 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 193 4e-48 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 193 4e-48 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 193 5e-48 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 193 5e-48 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 192 1e-47 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 189 8e-47 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 188 1e-46 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 188 1e-46 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 188 1e-46 UniRef50_UPI0001BC2D80 two-component system response regulator n... 186 6e-46 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 185 1e-45 UniRef50_UPI000050FA19 putative two-component response regulator... 184 2e-45 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 181 1e-44 UniRef50_B2GLU0 Putative CriR family two-component response regu... 181 2e-44 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 180 3e-44 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 179 7e-44 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 178 1e-43 UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=... 178 2e-43 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 177 2e-43 UniRef50_B1W048 Putative two-component system response regulator... 175 8e-43 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 173 5e-42 UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydr... 159 6e-38 UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM ... 156 6e-37 UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostri... 155 9e-37 UniRef50_A5UQ67 Response regulator receiver modulated metal depe... 154 2e-36 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 153 5e-36 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 152 6e-36 UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacil... 151 1e-35 UniRef50_A0LMH7 Two component, sigma54 specific, transcriptional... 151 1e-35 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 151 2e-35 UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnos... 149 9e-35 UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clost... 148 1e-34 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 147 2e-34 UniRef50_C6D3P9 Two component transcriptional regulator, AraC fa... 146 5e-34 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 146 5e-34 UniRef50_A5EWK6 Response regulator, NtrX n=1 Tax=Dichelobacter n... 146 7e-34 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 145 1e-33 UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 1... 145 1e-33 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 145 1e-33 UniRef50_C9RCQ8 Two component transcriptional regulator, LytTR f... 144 2e-33 UniRef50_C6CTL6 Two component transcriptional regulator, AraC fa... 144 2e-33 UniRef50_C1F424 Response regulator n=1 Tax=Acidobacterium capsul... 144 2e-33 UniRef50_C6JJS1 Sensory transduction protein kinase n=2 Tax=Fuso... 144 2e-33 UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=... 144 2e-33 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 144 2e-33 UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=... 144 2e-33 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 143 3e-33 UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostri... 143 4e-33 UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clos... 143 4e-33 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 143 5e-33 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 142 6e-33 UniRef50_Q31J89 Two component, sigma54 specific, transcriptional... 142 6e-33 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 142 6e-33 UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_3... 142 7e-33 UniRef50_C6C248 Response regulator receiver modulated metal depe... 142 7e-33 UniRef50_C6L8Z1 Putative response regulator receiver domain prot... 142 8e-33 UniRef50_A7VQN5 Putative uncharacterized protein n=2 Tax=Clostri... 142 9e-33 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 142 9e-33 UniRef50_Q9KBL6 Two-component response regulator n=1 Tax=Bacillu... 142 1e-32 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 142 1e-32 UniRef50_UPI000178A004 two component transcriptional regulator, ... 141 1e-32 UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional... 141 1e-32 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 141 1e-32 UniRef50_C0CWH6 Putative uncharacterized protein n=1 Tax=Clostri... 141 1e-32 UniRef50_B6R920 Response regulator receiver protein n=2 Tax=Prot... 141 2e-32 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 141 2e-32 UniRef50_B7JR06 DNA-binding response regulator n=23 Tax=Bacillus... 141 2e-32 UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostri... 141 2e-32 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 141 2e-32 UniRef50_C1PB78 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renib... 141 2e-32 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 140 3e-32 UniRef50_C7R6S4 Two component transcriptional regulator, LytTR f... 140 4e-32 UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermop... 140 4e-32 UniRef50_B5JSZ7 Response regulator receiver:LytTr DNA-binding re... 139 5e-32 UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinel... 139 5e-32 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 139 6e-32 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 139 7e-32 UniRef50_A1HTW5 Response regulator receiver protein n=1 Tax=Ther... 139 8e-32 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 139 1e-31 UniRef50_A6LTH8 Two component transcriptional regulator, LytTR f... 139 1e-31 UniRef50_A9KTC8 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_C0QAQ9 Sigma-54 dependent DNA-binding response regulato... 138 1e-31 UniRef50_C5V0U3 Response regulator receiver protein n=2 Tax=Gall... 138 1e-31 UniRef50_B1ZUL4 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_B1I2H5 Response regulator receiver modulated metal depe... 138 1e-31 UniRef50_C6W416 Two component transcriptional regulator, LytTR f... 138 2e-31 UniRef50_D0KVR8 Two component, sigma54 specific, transcriptional... 137 2e-31 UniRef50_C7IBY4 Two component transcriptional regulator, AraC fa... 137 2e-31 UniRef50_Q9F8J7 Putative transcriptional regulatory protein (Fra... 137 2e-31 Sequences not found previously or not previously below threshold: UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 149 5e-35 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 148 1e-34 UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=... 147 2e-34 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 147 2e-34 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 147 3e-34 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 146 6e-34 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 145 1e-33 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 144 2e-33 UniRef50_UPI00017896CE two component transcriptional regulator, ... 144 2e-33 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 144 2e-33 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 144 2e-33 UniRef50_A1ZD68 LytTr DNA-binding response regulator n=1 Tax=Mic... 144 3e-33 UniRef50_C6CWQ4 Two component transcriptional regulator, AraC fa... 144 3e-33 UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyog... 143 4e-33 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 143 4e-33 UniRef50_C3QXI3 Sensor protein n=4 Tax=Bacteroides RepID=C3QXI3_... 142 6e-33 UniRef50_C6J6V9 Response regulator n=2 Tax=Bacillales RepID=C6J6... 142 7e-33 UniRef50_B8I505 Two component transcriptional regulator, AraC fa... 142 1e-32 UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. ora... 141 1e-32 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 141 1e-32 UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostri... 141 1e-32 UniRef50_Q1AST2 Two component transcriptional regulator, LuxR fa... 141 2e-32 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 141 2e-32 UniRef50_A7B1D9 Putative uncharacterized protein n=1 Tax=Ruminoc... 141 2e-32 UniRef50_A6TNJ5 Two component transcriptional regulator, LuxR fa... 141 2e-32 UniRef50_Q26BE1 Response regulator, LytR/AlgR family n=3 Tax=Fla... 140 3e-32 UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus... 140 3e-32 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 140 3e-32 UniRef50_A5WD77 Two component transcriptional regulator, LuxR fa... 140 4e-32 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 140 4e-32 UniRef50_UPI0001C351CB two component AraC family transcriptional... 139 5e-32 UniRef50_C0GJ72 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 139 6e-32 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 139 6e-32 UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 ... 139 6e-32 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 139 7e-32 UniRef50_B5JNB1 LytTr DNA-binding domain family n=1 Tax=Verrucom... 139 7e-32 UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casselifl... 139 8e-32 UniRef50_C6CTF9 Two component transcriptional regulator, AraC fa... 139 8e-32 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 139 8e-32 UniRef50_A9KJ95 Two component transcriptional regulator, AraC fa... 139 9e-32 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 139 9e-32 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 139 9e-32 UniRef50_A6M388 Response regulator receiver protein n=3 Tax=Clos... 139 1e-31 UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminoc... 139 1e-31 UniRef50_Q0A576 Response regulator receiver protein n=1 Tax=Alka... 138 1e-31 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 138 1e-31 UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 138 1e-31 UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 138 1e-31 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 138 1e-31 UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7... 138 1e-31 UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional... 138 1e-31 UniRef50_C5ERJ4 Two component transcriptional regulator n=1 Tax=... 138 1e-31 UniRef50_UPI0001789951 two component transcriptional regulator, ... 138 2e-31 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 138 2e-31 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 137 2e-31 UniRef50_P72781 NarL subfamily n=42 Tax=Cyanobacteria RepID=P727... 137 2e-31 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 137 2e-31 UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clos... 137 2e-31 UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 T... 137 2e-31 UniRef50_B8FWU4 Two component transcriptional regulator, AraC fa... 137 2e-31 UniRef50_C6CT05 Two component transcriptional regulator, AraC fa... 137 2e-31 UniRef50_C6MU29 Response regulator receiver modulated diguanylat... 137 2e-31 UniRef50_Q5KTV1 Putative uncharacterized protein n=1 Tax=Staphyl... 137 2e-31 UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alka... 137 2e-31 UniRef50_B8FB26 Sensor protein n=2 Tax=Desulfobacteraceae RepID=... 137 2e-31 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 319 bits (818), Expect = 5e-86, Method: Composition-based stats. Identities = 226/226 (100%), Positives = 226/226 (100%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL Sbjct: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR Sbjct: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA Sbjct: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG Sbjct: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ + +A N +AR + E +P ++LLD Y PD Sbjct: 2 IRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEARELTEVLRPDVLLLDVYFPDMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ L + Q D++ TAA +++T+ +A+ GVFDY+IKPI + R +TL R++ Sbjct: 62 GISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRYKDY 121 Query: 125 K----HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 ++ + Q+ +DE+ + + LP GI PLTL V + K+ TA Sbjct: 122 HDKMQQWMKEKEWIGQEDVDELIGRELSAKEQPSLPKGIQPLTLEKVLVVVKQCRDGVTA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 E V Q + +SRTTARRYLEY S ++A+I +G VGRP+RIY Sbjct: 182 EEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYRK 226 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 112/226 (49%), Positives = 154/226 (68%), Gaps = 1/226 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LIVEDET +A++H+ Y++ F + +A ++ +AR M+ KP LI LDNYL Sbjct: 1 MMELIDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKPKLIFLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGI L EL DV+F TAASDMETV EAVRCGVFDYL+KPIAY+R+ +L R Sbjct: 61 PDGRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLER 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHT 179 + + L + DS +Q+ +DE+FN A+ + D LP GID LTL +++++ EP +T Sbjct: 121 YLKYISSLRANDSVNQRHVDELFNFQAKTDQLDGLPKGIDELTLIKIQEIYHHEPQAAYT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 AE + QA+ IS+TTARRYLEYC + + A I HG+VGRP+R+Y Sbjct: 181 AELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQK 226 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + +LIVED+ + E++ +I +PGF + +A + +A MI+ P L+LLD YL Sbjct: 1 MSQ-IGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMIKELSPDLVLLDIYL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ L E+ + P DV+ TAA D ET+ R G DY+IKP + RL L Sbjct: 60 PDVDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNS 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEPGVQHT 179 + + +Q +ID + RG+ DE +P G++ +TL V + GV + Sbjct: 120 YATLYNRFRRQAQMNQAEIDSL--TLGRGQQVDEGVPKGLNEVTLKQVFLYLLKEGVALS 177 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 AE VA+ + ++R TARRYL+Y ++ E+ +G VGRP Y Sbjct: 178 AEEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYR 222 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 242 bits (619), Expect = 6e-63, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +AE+H ++ PGF+ + +A A A + P L+LLD YLPD G+ Sbjct: 4 VLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAHPDLVLLDVYLPDMSGL 63 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++L L V+ TAA +++TVS A+ G DYL+KP Y +L + L FR+R Sbjct: 64 DVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENFRRRAR 123 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 LES A Q ID +F + LP G+ T V + + G + ++ A+ Sbjct: 124 ALESQSGADQSLIDSLFGGKGKNPEPSRLPKGLSAETGRLVLDILRSKG-ELSSTECAEL 182 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR + RRYLE+ S L+ + +G GRP R Y Sbjct: 183 AGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 242 bits (618), Expect = 7e-63, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 144/228 (63%), Gaps = 3/228 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M A ++++ED+ +AE+H Y+ + GF + +A ++A M ++ KP L+LLD YL Sbjct: 1 MNAITRVMVIEDDIAIAELHHRYLEQMGGFDVVGIATTQSEALMQLDILKPDLVLLDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+++L+ + ++ DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGCGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPK--DELPTGIDPLTLNAVRKLFKEPGVQ- 177 ++ ++ ES+ +Q +D+M A A+ + + LP GID +TL+ +R +F++ + Sbjct: 121 YQSQQQEFESVSDLNQGLVDKMLQANAKADSRKVSTLPKGIDGVTLDKIRAIFQQADIAD 180 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 TA+ + + SRTTARRYLE+ + ++A++ +G VGRP+R Y+ Sbjct: 181 ITADEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRPERCYNK 228 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 242 bits (618), Expect = 8e-63, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 1 MTAP-LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M+ +T++IVED+ A ++ ++ + GF I A QA M+ P ++LLD Y Sbjct: 1 MSEKLITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEMLHVVTPDVLLLDIY 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPD GI+LL E+ + DVV TAA+D+ETV EA+R G + Y+IKPI ++ TL Sbjct: 61 LPDMNGIDLLREVRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLE 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKD------ELPTGIDPLTLNAVRKLFKE 173 ++ +H L+ + Q +D++F A LP GID LTL +R +E Sbjct: 121 QYANTRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIRDKMQE 180 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ +A +S +T RRYLE+ S + + E +G VGRP+R Y Sbjct: 181 TTQSMNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKYR 231 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 124/218 (56%), Gaps = 1/218 (0%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+L++ED+ + E++ ++I + GF+ I A N + +I++ +P L ++D Y+P G Sbjct: 7 TVLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDG 66 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L ++ Y DV+ TAASD+ETV + ++ G DY++KP +ER+ Q L ++R + Sbjct: 67 LTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQYRSFQ 126 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + +Q ++D M E D LP G++ +TL +++ E +AE VA Sbjct: 127 VKISQKEHITQSELDSMLFQQFE-EKADLLPKGLNAVTLRRIQQYLSEQNHPISAEEVAD 185 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + I+R TARRYLE+ + + + +G+VGRP Y Sbjct: 186 GVGIARVTARRYLEFLEQENELKLSVEYGRVGRPINRY 223 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 239 bits (610), Expect = 6e-62, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ I +A N +A+ +E +P L+LLD Y PD Sbjct: 2 IRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKDQMEILQPDLVLLDIYFPDMD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L + + DV+ TAA +++ V EA+R GVFD++ KP+ + RL QTL +++ Sbjct: 62 GLDFLSIIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTLRNYQEF 121 Query: 125 KHMLESI----DSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + + D SQ QIDE+ + + P+ + GID +TL+ + + T Sbjct: 122 RQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFLMQTQEA-T 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + V++ ISR+TARRYLEY ++ IA++ +G VGRP+R+Y S Sbjct: 181 TDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYKS 226 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 137/226 (60%), Gaps = 2/226 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ ++I+ED+ +AE+H +Y+ + G + +A +A M ++ KP L+L+D YL Sbjct: 1 MSMATRVMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEAEMQLDILKPDLLLMDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ +L+ L + DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGTGLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + ++ L+ +S Q +D+M ++A + + LP GID +TL+ +R+LF G T Sbjct: 121 YVSQRQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELF-PNGSVLT 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A+ + + SRTTARRYLEY S + A++ +G VGRP+R Y Sbjct: 180 ADEAGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRPERCYKK 225 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + E++ ++I +PGF + +A N A +++ P L+++D ++P Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLVKELTPDLVIIDIFMPIQD 67 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L EL A + DV+ TAA D T+ +R G DY+IKP +ER+ Q+L +R+ Sbjct: 68 GVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSLENYREF 127 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDEL-------PTGIDPLTLNAVRKLFKEPGVQ 177 + ++ +ASQ ++D++ +R + + + P G+ +T+ + + ++ Sbjct: 128 RRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQIEKESQP 187 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A+ VA+ + I+R TARRYL+Y + ++ +G VGRP Y Sbjct: 188 LSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRY 233 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 237 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIVED+ +A+++ Y+ + GF + +A + +A I LI+LD ++ Sbjct: 2 ISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFINHNNVDLIILDIHMAKVD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L E+ + DV+F TAA + ET+ E ++ G DYLIKP YER+ L + +R Sbjct: 62 GLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENYERR 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETV 183 H+L Q+ ID++ + LP G+ TL VR+ ++ + T++ V Sbjct: 122 YHLLRKEHVIKQEDIDKITTKNPTHNQRP-LPKGLHEKTLKKVRRYMQDHKDELLTSDEV 180 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A L SR T RRYLEY S + EI +G +GRP Y Sbjct: 181 AAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKYKM 222 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 1/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M ++++I+ED+ + E+H +Y+ + GF+ A + + +I + +P L ++D Y+ Sbjct: 1 METSISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNIIAKLQPHLAIVDIYM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+++L + + + DV+ TAA D ++V + ++ G DY+IKP + R + L Sbjct: 61 PGISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALET 120 Query: 121 FRQRK-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 +R+ + SQK ID + N K LP G+ TL+ + +L ++ T Sbjct: 121 YRRYFCKLRTKEQLISQKDIDMLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGYFT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + +A AL ISR T +RYL Y ++ + +G VGRP + + Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRPLQKF 224 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 1/223 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + A ++ LILLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHILGEHHIDLILLDIYMPGKN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL EL + DV+ +AAS+++ + + +R G DYLIKP +ER L+ +R++ Sbjct: 62 GLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDYRRK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETV 183 + + + + SQK++D K +LP G+ TL + + T E + Sbjct: 122 QKVYSTHRNMSQKELDAELFQKKEATEKVQLPKGLTKSTLKLIWSSIQSFENESFTTEDL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 A+ IS+ + R+YL++ ++ E+ +G +GRP Y+ Sbjct: 182 AKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVN 224 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 236 bits (602), Expect = 6e-61, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 1/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LIVED+ +A +H ++I + GF + + A ++R L++LD +L Sbjct: 1 MPEAIDVLIVEDDPMVAAIHRQFIGAVSGFIVAGVVSSGKDALEFLQRHPVRLVILDVFL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ L ++ + + V+ +A+ D T++ ++ G FDY+IKP +ER+ +L Sbjct: 61 PGMDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTSLRS 120 Query: 121 FRQ-RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 F+Q + D QK++D + + ++LP G++P TL V+ L + Sbjct: 121 FQQLENRLNRGADQIDQKELDRLLQVQQKETSTNDLPKGLNPQTLQQVKNLLGHAASPLS 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + AQAL ISR TARRYLEY + E+ + KVGRP Y Sbjct: 181 SVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRY 224 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 235 bits (601), Expect = 8e-61, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A +H + + GF + +A LA A M E KP L+LLD Y P+G Sbjct: 2 IKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEMTEILKPELVLLDMYFPEGS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L ++ + D++ TAA D+ + EAVR G FDY++KP+ +ER ++L RF+ Sbjct: 62 GMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSLNRFKDY 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + Q ID + + ++ + +P GIDP+TL + +F++ +++ V Sbjct: 122 LKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIISVFEKKHEAMSSDEV 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SR TARRYLEY ++ +I +G VGRP++ + Sbjct: 182 GRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEKRFK 222 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 235 bits (600), Expect = 9e-61, Method: Composition-based stats. Identities = 110/224 (49%), Positives = 144/224 (64%), Gaps = 2/224 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +T LIVEDE LAE+ + I+ P F I +A L AR + ++P LILLDN+LPD Sbjct: 2 DSITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQPQLILLDNFLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+GI+L+ V HY G ++F TA + MET+SEA+R GVFDYLIKP+ Y+RL TL RF Sbjct: 62 GKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFA 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + L S + ASQ +D +FN AR EP GID T V +LF +P V HTA Sbjct: 122 RYRSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQLFADPTVVHTA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +++A+ L S+TTARRYLE + AEI +GKVGRP+RIYH Sbjct: 182 DSLARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRPERIYH 225 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 235 bits (600), Expect = 9e-61, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + QA M++ L+LLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDMLKTEAIHLVLLDIYMPGQN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + ++ DV+ +AA++++ V + +R G DYLIKP +ER L+ ++++ Sbjct: 62 GLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEYKRK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG-VQHTAETV 183 + ++++S SQ +D K LP G+ TL + + G T E + Sbjct: 122 HALYQTMNSISQNDLDAKLFHKKAETEKVLLPKGLTKSTLKLIWTSIQSFGHQAFTTEDL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 A IS+ + R+YL++ ++ E+ +G +GRP Y Sbjct: 182 ANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRPVFQYKLS 224 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 235 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 L + IVED+ A++H + I I GFS I +A N A+ ++ KP L+LLD +LPD Sbjct: 2 KALQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLLPDVKPDLVLLDIFLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ LL + Q DV+ TAA ++E V +A+R G DYLIKPI + RL +TL +R Sbjct: 62 GSGMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYR 121 Query: 123 QRKHMLESIDSASQKQIDEMF----NAYARGEPKDELPTGIDPLTLNAVRKLF--KEPGV 176 + + + S Q +D + + K + P GID LTL V + E Sbjct: 122 SYRLKVNEMSSIDQTDVDSLMAKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSD 181 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TAE++ + + +SRTTARRYLE+ A+ + E+ +G VGRP+R Y Sbjct: 182 GITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 12/230 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ + GF + A A A + +P L+LLD YLPD Sbjct: 2 IKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAVGELRPELVLLDIYLPDMD 61 Query: 65 GINLLHELV----QAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ +L EL + DV+ TAA D++TV A+R G YLIKP +YE L L Sbjct: 62 GLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQLEN 121 Query: 121 FRQRKHMLESID---SASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE---P 174 FR L ++ A+Q+ +D +F + ARG P G+ T V + +E Sbjct: 122 FRSLHRSLSAMPGDAPAAQQDVDRLFGSRARG--SSAPPKGVSSETARIVEDILRERSAE 179 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 G +A A A +SR +AR+YLE+ + +G GRP+R Y Sbjct: 180 GGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYR 229 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 137/236 (58%), Gaps = 10/236 (4%) Query: 1 MTAPL-TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI---ERFKPGLILL 56 M P+ +LIVED+ +AE+ ++ + GF+ I L A+ + P LILL Sbjct: 1 MQNPMYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILL 60 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D Y+PD G++L ++ + + D+V TAA ++ T+ EA+R G+FDY++KP+ + R + Sbjct: 61 DVYIPDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKR 120 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPK-----DELPTGIDPLTLNAVRKLF 171 TL F+ ++ L S + +Q++ID + A + + ++LP GID +TL+ V+ + Sbjct: 121 TLDTFKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNIL 180 Query: 172 K-EPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 TA ++ +A+ ISR+TARRYLEY S AE+ +G VGRP+R+Y S Sbjct: 181 SLHSDTGITASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRPERLYISN 236 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 233 bits (595), Expect = 3e-60, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L++ED+ +A++H ++ I GF+ I A +A ++ F P LILLD +L Sbjct: 1 MTD-IEVLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWLQSFAPQLILLDVFL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G++L+ ++ + ++ TAA++ V +A R V DY++KP +++L +++ + Sbjct: 60 PDILGVDLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEK 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDEL---PTGIDPLTLNAVRKLFKEPGVQ 177 FR + +L++ + +Q++I ++ A P+D P GID T+N V Sbjct: 120 FRFKHLLLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKDG 179 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE + + + +SR+TARRYLE+ ++ E+ +G VGRP+R Y Sbjct: 180 STAELLGKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRY 225 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 233 bits (595), Expect = 3e-60, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 116/220 (52%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + E++ ++ + GF+ + + + +P LILLD ++P Sbjct: 7 IRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEGMVKTRELQPDLILLDIFMPKQD 66 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ + ++ + + D++ TAA+D +T+ +R GV DYL+KP +ERL LT++ + Sbjct: 67 GLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYEEM 126 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ++ SQ +DEM D+LP G+ TL V + +E +AE + Sbjct: 127 FRKMQKEAELSQDSLDEMIKQKQAQANMDDLPKGLHAHTLQQVIERLEELDEPKSAEEIG 186 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + ++R T RRYL Y S + ++ +G +GRP + Y Sbjct: 187 RDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYK 226 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ LLI ED+ +AE+ +I+ + +A LA AR E KP LILLD Y PDG Sbjct: 3 PIRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADAREQAEVLKPDLILLDVYFPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL EL ++ DV+ TAA ++ET+ A+R GVFDY++KP+A+ERL + + RF Sbjct: 63 NGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFCD 122 Query: 124 RKHMLESIDSASQKQIDEMF---NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 L ++ Q ++D + + + LP GID +TL+ +R++ + G +A Sbjct: 123 HVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVAD-GKPWSA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 E V A+ SRTTARRYLEY + AE+ +G +GRP+R Y Sbjct: 182 EEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYRM 226 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 233 bits (594), Expect = 5e-60, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +AE+H +++ + GF + + L AR I KP L+LLD +LPDG Sbjct: 2 IKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQIGILKPDLVLLDVWLPDGE 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL EL QA DV+ TAA + + EA+R GV D+++KP+ +ERL TL + Q Sbjct: 62 GFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNYCQS 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + L ID Q+ +D +F + LP GID LTL V GV +AE + Sbjct: 122 RAALADID---QQAVDALFGTPLQQVAAGGLPKGIDALTLQRVLAAL--TGVGASAEEIG 176 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +SRTTARRYLE+ + L E+ +G VGRP+R Y + Sbjct: 177 NRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQA 217 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 232 bits (592), Expect = 8e-60, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + + IVED+ + E++ ++ + GF + A ++ +A++ I + K L+LLD +LPDG+ Sbjct: 4 IKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEAKIKITKEKADLVLLDIFLPDGK 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+LL + D + TA +V EA + G DYLIKP +ER + L+ +R R Sbjct: 64 GIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYRNR 123 Query: 125 KHMLESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVR-KLFKEPGVQH 178 L +ID+ +Q ID+ N + EL G+ T N + + ++ G Sbjct: 124 FVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQDL 183 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE +A+ ++R TARRYLE + +GK+GRP Y Sbjct: 184 TAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYY 228 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 232 bits (592), Expect = 8e-60, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 144/227 (63%), Gaps = 3/227 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + ++IVED+ + ++ + I+ F+ + +A + AR +I+ ++P LILLDNYLPD Sbjct: 2 ETIDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTIIQAYQPQLILLDNYLPD 61 Query: 63 GRGINLLHEL--VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G GI+L ++ + DVV TA+ D+ TV EA++ G FDYL+KPI+++R QTL R Sbjct: 62 GLGIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQR 121 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHT 179 + + +++ D+ +QK IDE+FN R + LP GI+ +TL+ + +L G + T Sbjct: 122 YLDLNNAMKAYDNLNQKYIDELFNIQHRKQQVSLLPKGIEQITLDKIIRLLSLNNGDKFT 181 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 E V+ +S+TTARRYLEYCA+ LII+E +GKVGRP+R+Y Sbjct: 182 VEKVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRPERVYTKN 228 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 231 bits (591), Expect = 9e-60, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TAP+T+L+V+D+ +A++HA Y+ IPGF+ A + AQA ++ +P L+L+D YLP Sbjct: 9 TAPVTVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLVAAIRPDLVLMDVYLP 68 Query: 62 DGRGINLLHELVQA------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG 115 DG G+ ++ +L++A D + TAA D+ TV A++ G YL+KP Y + Sbjct: 69 DGDGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMA 128 Query: 116 QTLTRFRQRKHMLESIDS--ASQKQIDEMFNAYARGEPKDELP-TGIDPLTLNAVRKLFK 172 + LT + + ++++++ A Q +DE+F LP G TL VR + Sbjct: 129 EKLTSYLDLRRRMQTLNTADADQADVDELFGLLRGQPALPTLPAKGHSAPTLELVRSAVR 188 Query: 173 EPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 +A VA+ + ISR TA+RYL Y ++ ++ +G GRP+ Y + Sbjct: 189 AAPGDISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRYSA 241 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 231 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 2/226 (0%) Query: 1 MTAPLT-LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M +T +LIVEDE LA +HAE ++ P + +A LA A I +P L+LLDNY Sbjct: 29 MPPEMTDVLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQIRDKRPHLVLLDNY 88 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPDG+GI L L + V+F TAASDM+T S+A+R G FDYL+KP++++RL +L Sbjct: 89 LPDGKGITLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLE 148 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-H 178 RF Q + Q+ +D ++ AR D GI+ TL V++LF + Q Sbjct: 149 RFVQFREQQRVWKIVDQQNVDSLYQLQARSFRPDSGAKGIEESTLTLVQRLFVDSREQIF 208 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + V A +S+TT RRYLE+C + E+++GK+G P+R+Y Sbjct: 209 SVDDVVSATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLYR 254 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +LI+ED+ +AE + Y+ I F + AQA ++ P LILLD +LP Sbjct: 2 KKIRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETLKTNMPDLILLDVFLP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 +G G++LL + ++ DV+ TAA D TV EA+R G D+LIKP ++R Q L + Sbjct: 62 NGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNY 121 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 K ++++ +Q +D F+ LP G+ LTL + + + Sbjct: 122 VHLKKVIDTEQEINQADLDSRFDFLEIDYTTSSLPKGVHLLTLKLITDYLYDHPNPKSCH 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A L++SR TA +YLE+ + + + + KVGRP ++Y Sbjct: 182 EIAADLSMSRITAWKYLEHLVKQGQVTVSLEY-KVGRPTKLYK 223 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED + ++H ++ + GF + +A +L +A I +P LILLD + PDG Sbjct: 4 IQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETIAVLQPDLILLDLFFPDGH 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L + DV+ TA D+ ++ +A+R G FDY++KP+ ++R ++L +++ Sbjct: 64 GMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKYKTF 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGV-QHTAET 182 K + + + QK D +F + + E D++P GIDPLTL V+ E G A+ Sbjct: 124 KTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGICAQE 183 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + SR TARRYLEY S I A+I +G VGRP+R Y Sbjct: 184 TGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKY 224 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I ED+ +AE+H ++++ + + A N +A + +P ++LLD YLPD Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLANMHQPDVLLLDVYLPDRL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+++L EL QA +V TAA++ +A++ GV DYL+KPIA+ERL Q++ + + Sbjct: 61 GVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAKSL 120 Query: 125 KHMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + L+ Q+ D+ F A + P + LP GID LTL VR L ++ TAE + Sbjct: 121 RKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLRQQSEGVTAEAL 180 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + SRTT+RRYLEY S + AE+ +G VGRP+R Y + Sbjct: 181 GRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKYWA 222 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 229 bits (585), Expect = 5e-59, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +A +H +++ GF +A A + P L+LLD +LPD G+ Sbjct: 10 VLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKLAELSPDLMLLDVHLPDMSGL 69 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 +L Q H DV+ TA D++ V EA + G YL+KP Y L + L FR+ + Sbjct: 70 EVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKLAHFRKARA 129 Query: 127 MLESIDSASQKQIDEMFNA-YARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 +L++ + Q ID++F + P+ +LP G+ T + VR+ +A A+ Sbjct: 130 LLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLS-ADEALSATECAE 187 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ISR +ARRYLEY + + +GK GRP+R+Y Sbjct: 188 RVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYR 226 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 229 bits (585), Expect = 5e-59, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIVED+ + +++ ++ I GF I A N A+ ++ +P L+LLD YLPD G Sbjct: 6 VLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELLSCTRPQLVLLDVYLPDMLGT 65 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ + Q + DV+ TAA +ME V EA+R GV+DY++KP+ +ER + L +R+ Sbjct: 66 ELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESYRKHVI 125 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGV-QHTAETV 183 Q+ ID+M + P GID LTL V + ++ G +AE + Sbjct: 126 RTREAVEVDQEVIDQMLTRRLVAPKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGVSAEEI 185 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SRTTARRYLEY A++++G VGRP+R Y Sbjct: 186 GREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYR 226 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ + ++++++++ I GFS NL++A+ + + + LILLD +LP+ Sbjct: 2 IKTMIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQVDLILLDIFLPNEN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+LL L Q DV+ TA +E V +A R GV DYLIKP +ER ++L FR+R Sbjct: 62 GIDLLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIFRER 121 Query: 125 KHMLESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVRKLFKEP-GVQH 178 + E+ + Q +D+ E K L G++ T N++ Sbjct: 122 LNSFENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKEEYF 181 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T E +++ L I++ T R+YL+Y + + + I +GK+GRP Y Sbjct: 182 TTEDLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRPLYKYK 227 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 3/222 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + + +LIVED+ + ++H ++ IPGF + L N ++E+ L++LD Y+P+ Sbjct: 2 SDIRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVLEQRSVDLVILDIYMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LHE+ + DV+ +AA + +TV + +R G FDY++KP YER + + + Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 Q ID + AR + LP G+ + L+ VR + E +A+ Sbjct: 122 LY---WAQKGDLDQGAIDRIMRRGAREKRDRCLPKGLGSVQLDRVRSILMEEEGALSADE 178 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 VA +SR TARRYLEY S + E +H VGRP +Y Sbjct: 179 VAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYR 220 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 226 bits (576), Expect = 5e-58, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK-PGLILLDNYLPDG 63 + +LIVED+ +A + Y+R +PGF AG + +A+ + K L+LLD Y+P Sbjct: 2 IQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKTIQLVLLDVYMPGE 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L + DV+ TAASD E++ A+R G DY++KP + R + L ++ Sbjct: 62 NGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAYQS 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG-VQHTAET 182 R + ++ QKQ+DE F K LP G+ TL V + ++ G + E Sbjct: 122 RYNFFRKEETTDQKQLDETFFEKKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFSTED 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A +SR + ++YL + ++ + +G +GRP IY Sbjct: 182 IALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIYR 223 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 226 bits (576), Expect = 5e-58, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ +A+++ Y+ + N A IE +P LI+LD Y+P Sbjct: 2 IKTIIVEDDPMVAQINRRYLDTANDIQVAAVFDNGKDALAYIEDEEPDLIILDVYMPVMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ +A DV+ TAA+D++ V EA+R G+ DYL+KP YER + + ++R++ Sbjct: 62 GLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEKYRKK 121 Query: 125 KHMLESIDSASQKQIDEMFN--AYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAE 181 H+L+ + +Q ID + + A P +L G+ TL+ +R + G T + Sbjct: 122 AHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGETCTCD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 T+A + +S+ T RRYL Y A I + + + GRP Y Sbjct: 182 TLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRPCIKY 223 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 225 bits (574), Expect = 9e-58, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 119/219 (54%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+ ED+ +A++H +Y+ I A + ++ K L+LLD YLPD Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKLKENKFDLLLLDVYLPDEL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GIN++ Q H ++ TAA+D+E + +A GV DYLIKPIA +RL + + + Sbjct: 61 GINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAINKAVKN 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S +Q+ D++F K E P GID LTL V ++ ++ TA+ V Sbjct: 121 HQFIRSQGEFTQQLADQLFQNQQEIMEKQEYPKGIDELTLKKVNEVLQKQSSGMTADQVG 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + +SRTTARRYLEY S AE+ +G VGRP+R Y Sbjct: 181 KDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKY 219 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 225 bits (574), Expect = 9e-58, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE++ Y+ + GF A ++ +A ++E+ LILLD Y+P Sbjct: 2 INVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLLEKEDIQLILLDIYMPGRL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ L + DV+ +AA DM+ + +A+R GV DYLIKP +ER LT + Q+ Sbjct: 62 GLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAYEQQ 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETV 183 E + +Q+++D +ELP G+ TL V + +E + + + Sbjct: 122 SRFAEKREEVTQQELDSHLLRREEPSVVEELPKGLTKDTLKQVWEAVQELKEGPFSTDEM 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRP--QRIYH 224 A+A+ +SR +AR+YL + ++ ++++G +GRP Q Y+ Sbjct: 182 AEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRPVYQHEYN 224 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 1/219 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI+EDE+ LA +HAE ++ P +A +LAQAR ++ P L+LLDNYLPDG+G+ Sbjct: 9 VLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGV 68 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ + A V+F TAASDMET S+A+R G FDY++KP++++RL Q+L RF Q Sbjct: 69 TLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYD 128 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETVAQ 185 Q+ +D ++ A+ D GI+ TL V+ LF + + + V Sbjct: 129 QQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVS 188 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A +S+TTARRYLE+ + E+++GK+G P+R+Y Sbjct: 189 AAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYR 227 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 130/220 (59%), Gaps = 5/220 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L ++IVED+ + +HA++++ F+ + + LA A+ M+E KP L+++DNYLPDG Sbjct: 4 LNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAKPDLVIVDNYLPDGL 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L+ L+ + TAA D+ET +A R G FDY++KP+ Y RL ++L RF + Sbjct: 64 GIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQRFYRL 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +H + Q+ +DE+F+ + + T ID TL + + F V+HTA+++A Sbjct: 124 RHPEPFSKAVRQQDLDELFHPQ-----RSKPQTTIDDFTLEQMLEHFSHTNVEHTADSMA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 L IS++TARRYL+ I A + HGKVGRP R+Y Sbjct: 179 LRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVYR 218 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT +LI+ED+ +AE++ ++ IP + I N+ + + + L+LLD Y+ Sbjct: 2 MT---NVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKKYFRQKNADLLLLDVYM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI+ L L Q V+ TAA D+ET+ +R G DYLIKP +R + + Sbjct: 59 PGESGIHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEK 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFN---AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + +++ + A QK ID++FN +LP G+ LTL + + Sbjct: 119 YLAFSQTIQTTEKADQKLIDQVFNHTTPIHETPSFIDLPKGLSKLTLKKISASILKEETI 178 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + +AQ +SR + ++YL + + ++ I + ++GRP Y Sbjct: 179 FSTKELAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYE 225 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ +A++H Y+ + GF + + N +A + + L++LD +LP Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALDFLRKRPVRLVILDIFLPGLD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ- 123 G+ L + ++ DV+ +A+ D TV++ ++ G FDY++KP A++R+ L FRQ Sbjct: 64 GLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFRQV 123 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + E + Q+ ID + A + + LP G++P L V L + ++ Sbjct: 124 VHRLTEGPNQVDQQDIDNLLLARNKKNIQTVLPKGLNPNVLEKVEALLTKVDKPLSSVET 183 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+A+ +SR TARRYLEY + + E + +VGRP Y Sbjct: 184 AEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYE 224 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 222 bits (567), Expect = 6e-57, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 5/224 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI ED+ +A +HA YI+ I GF A + +++ + LILLD Y+PD Sbjct: 3 MKVLIAEDDFRIAAIHASYIQQIEGFQVAGKAKSAKDMWEALQQEQVDLILLDVYMPDEL 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G NLL L + + DV+ TAA++ + +A++ GV YLIKP+ ++ Q LT ++++ Sbjct: 63 GTNLLPLLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTEYKEK 122 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKD----ELPTGIDPLTLNAVRKLFKEPGVQHTA 180 K M+ S D +Q ID +F + EPK+ +LPTGI+ LTL+ V+ L + +A Sbjct: 123 KDMINSKDEVNQTMID-LFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESENDGISA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E + + + SRTTARRY+EY + AE+ +G +GRP+R Y+ Sbjct: 182 EELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKYY 225 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ PGF+ I A + A M +P LILLD YLPD Sbjct: 2 IRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAALRMARDERPDLILLDIYLPDID 61 Query: 65 GINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR-- 120 G+ +L EL DVV TAA D++T+ ++ G YLIKP +Y L L Sbjct: 62 GLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLDHVS 121 Query: 121 -FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 ++ L + +A+Q ++D++F+ R LP G+ T VR E + Sbjct: 122 SLHRKLERLSARPAAAQHEVDDVFSGRPR--RTASLPKGLTEQTAALVRTALTEHPEGLS 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A +SR + RRYLE+ A + +G GRP+R YH Sbjct: 180 ATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRYH 224 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 114/220 (51%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +AE++ ++ + GF+ + + + A A + + LI+LDNYLP+ Sbjct: 4 IRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVKDGAAALAFVAQKSVDLIILDNYLPEKT 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L EL + P DV+ TAA D +TVS +R GV Y+ KP +ER L +R Sbjct: 64 GVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYRSF 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +Q+ IDEMF+ R D++P T+N + +AE +A Sbjct: 124 REKTLKKTNLAQEDIDEMFSVRQRSAGPDDIPKNFSQQTMNLIIDFLANQTAPLSAEEIA 183 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ISR TARRYLEY + + + VGRP + Sbjct: 184 AGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRPVHRFK 223 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T++IVEDE +A + A+Y+ + I +A +++ AR ++ P L+LLD YLPDG G Sbjct: 3 TVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGAITPDLLLLDVYLPDGNG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 +NLL EL +VV TAA +++ + +A++ GVFD+L+KP+ RL Q L+RF R+ Sbjct: 63 LNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRFESRQ 122 Query: 126 HMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAETV 183 L + + +Q +D + LP G+D LTL +R++F +P + TA+ V Sbjct: 123 LKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLTAQMV 182 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + L +SR+TARRYLE+ + + A+ +G +GRP+R YH Sbjct: 183 GEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRPERCYH 223 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 220 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 116/220 (52%), Gaps = 1/220 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LIVED+ +A ++ Y+ + F + + N +A I K L+LLD Y+ Sbjct: 3 IKTLIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKIRMKKIELLLLDVYMAKMN 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL + + + DV+ TAA E + E R GV D ++KP ++R ++L + +R Sbjct: 63 GLELLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYYKR 122 Query: 125 KHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +M + + +Q ID + N + + LP GID +TLN +RK+ KE T + + Sbjct: 123 YNMFNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVLKEAPCPLTIQEL 182 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + IS+ T R+YLE+ A + I ++ + GRP ++Y Sbjct: 183 EKHVQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLY 222 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 6/223 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+VED+ +A ++ + + P + A LAQA +++ P LILLD +L Sbjct: 1 MTR-VRVLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQADALLQALAPDLILLDVHL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+NLL DV TAA D +V A+ G FDYLIKP RL + + R Sbjct: 60 PDGSGLNLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVAR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 R R+ + Q +D + G + LP GIDP TL V ++ + G +A Sbjct: 120 HRARR---VPRGTLDQSHLDRLLGV--SGGIPEPLPRGIDPHTLERVAQVLEGAGGALSA 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 E V +SR TA RYLE+ + +G GRP ++Y Sbjct: 175 EEVGDRAHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLY 217 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ + E++ +I+ + GF I + ++ ++ P L++LD YLPD Sbjct: 2 IKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSPELLILDIYLPDID 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + + DV+ TAA E V+E +R GV DY+IKP ERL + L ++ + Sbjct: 62 GLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYKNK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S Q+ ID +F AR ELP G++ +TL + L +E A VA Sbjct: 122 YLKIGRKRSVQQEDIDRLF---ARSSAGGELPKGLNDITLKKILSLLEETREPLAAAEVA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ISR TARRYLEY L EI +G +GRP Y+ Sbjct: 179 KRAGISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYYY 218 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 220 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A ++ Y+ GF + ++ A ++E + L+LLD ++P+ Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEASRVDLVLLDIFMPEET 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL + D++ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 62 GFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYREK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFKE-PGVQHTAE 181 ++ SQ ++D + + EP ELP G+ T+ + K + G T + Sbjct: 122 LTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAFTTD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AQ + +SR + R+Y+ + ++ E+V+ VGRP Sbjct: 182 EMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 224 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE+H +I + F I +A NL A +I KP L+++DNYLPDG Sbjct: 2 IKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAKPDLVIIDNYLPDGL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ + + + TAA+D TV A R G FDYL+KP+ Y RL +L R + Sbjct: 62 GVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRLMKM 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 K +++S Q ++D +F+A E + +G+D TL V LF +HTA +VA Sbjct: 122 KQLVDSQKMVKQSELDGIFHA---TELVVDEASGVDEFTLQQVVSLFPHGHSEHTAASVA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 L +S++TARRYL+ R + A + HGKVGRP R Y + Sbjct: 179 ALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYRN 219 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 218 bits (557), Expect = 8e-56, Method: Composition-based stats. Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 2/211 (0%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A +IR P F + A LA AR+ I KP L++LDNYLPDG GI+++ L Sbjct: 1 MAFFIESFIRKHPEFLLLGSADTLADARLAIAAQKPDLVMLDNYLPDGTGIDMMKHLRAT 60 Query: 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSAS 135 DV+F TAA+D+ET+ A+R G DYL+KP ERL + L + + Sbjct: 61 QPEVDVIFITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSHLQ 120 Query: 136 QKQIDEMFNAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTT 193 Q +ID + P GID LTLN VR F QHTA++++ + IS++T Sbjct: 121 QDEIDRVIRQSIPHHVPAGFIYPKGIDELTLNQVRAAFSGEHTQHTADSLSDMIGISKST 180 Query: 194 ARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 ARRYLEYC + L+ A I HG VGRPQR Y Sbjct: 181 ARRYLEYCKNIKLLEAHIQHGTVGRPQRFYR 211 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 218 bits (557), Expect = 8e-56, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + + I ED+ +A++H I+ + GF I A N + +++ K L+LLD Y+PD Sbjct: 2 IHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLKEHKADLLLLDIYMPDEL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G L+ ++ D++ TAA++ + EA+R G+ YLIKP+ ++ Q L +++++ Sbjct: 62 GTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQYKEK 121 Query: 125 KHMLESIDSASQKQIDEMF-NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +L S SQ ID +F N P ++LPTGI+ +TL +++ + TAE + Sbjct: 122 RKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEALQTASEGLTAEEL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SRTTARRY EY S+ AE+ +G +GRP+R Y+ Sbjct: 182 GEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYY 222 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT +LIVED+ + +H Y+ I F I + +A A+ ++ L+LLD L Sbjct: 1 MT---NILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLLASRSIQLVLLDIRL 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 DG GI+ L +L + DV+ TAA+++ V++A+ GV DYLIKP ER +++ R Sbjct: 58 KDGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQR 117 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R + L + D +Q Q+D F P +L G+ TL ++ K+ T Sbjct: 118 YRTKHQALVT-DQLNQSQLDTYFEPQTTIPPTVDLDKGLSKATLQLIQGAIKQLPQPFTV 176 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +S + R+YL + H + + ++ K GRP + Y Sbjct: 177 AQLTTETGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQM 221 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPD 62 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 62 ENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFK-EPGVQHTA 180 Q+K LE Q ++D++ + + E LP G+ P TL + + + + Sbjct: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +A + ISR + R+YL + + H++ I +G GRP Y Sbjct: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T + +LIVED+ A ++ + I+ F+ + A + +++ P L+LLD LP Sbjct: 3 TPSIGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLLQVITPDLVLLDVQLP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 D GI+LL + Q + DV+ TA++D +TV EA R G F Y++KPI +R QTL + Sbjct: 63 DANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEY 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDEL--------PTGIDPLTLNAVRKLFKE 173 + + + + +++ I +F+ G+P + P GID TL V + Sbjct: 123 KAARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVH 182 Query: 174 PGVQHT--AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + AE V + + S +TARRYLEY S + ++V+G VGRP+R Y Sbjct: 183 ITESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRYK 235 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 216 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IVED+ +A ++ Y+ + GF + +A ++ +A +++ ILLD ++P G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEILKESSIDFILLDIFMPVDTGFE 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL + DV+ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 61 LLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKFIF 120 Query: 128 LESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFKE-PGVQHTAETVA 184 ++ SQ ++D + + E ELP G+ TL + K + G T + +A Sbjct: 121 MKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDEMA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 Q + ISR + R+Y+ + ++ E+V+ VGRP Sbjct: 181 QLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 220 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +LI+ED+ +A +H+++I F + +A NLAQA + + L+++DNYLPDG Sbjct: 2 FNVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKLAQTVFDLVIIDNYLPDGL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ L ++ + P + + TAA+D+ETV +A+RCG DYL+KP+ Y+R Q+L +F Sbjct: 62 GIDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKFALV 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +H L S +Q ++D +F +G P ++ + D TL + F V+ + +A Sbjct: 122 QHTLSHGISLAQGELDALFQ---KGVPSNKK-SSTDAHTLKQILDEFYHANVELSVSAIA 177 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 ++ +IS++TARRYL+ + + A + HGKVGRP RIY Sbjct: 178 ESFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIYR 217 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP--GLILLDN 58 MT +LI+ED+ +A++ + + P F I +A + LILLD Sbjct: 1 MTKLYKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDV 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 Y+PD +G+ LL + + D++ TAA +++TV EA+R G+ DYL+KP+ E L Q L Sbjct: 61 YIPDVKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRL 120 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDEL-PTGIDPLTLNAVRKLFKEPG-V 176 + Q++ + SQ+++D++ R + + P GID LTL V +E Sbjct: 121 DAYVQKRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQ 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TA A+ + SR+T RRY EY AE+ +G VGRP+R Y Sbjct: 181 GLTAMEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRY 227 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 212 bits (540), Expect = 8e-54, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + LIVED+ +A +H + F + A L AR+M E P L+LLD YL Sbjct: 1 MTF-IRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVARVMAETLCPDLLLLDVYL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRG++LL EL D V TAASD+ +V EA+ G DYL+KP ER L R Sbjct: 60 PDGRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 R+R + + ++ Q +D +F +G+DP TL+ VR + G ++A Sbjct: 120 VRERSALWQQ-EAVRQGHLDALF------ARPPLPASGLDPETLHRVRATLR-SGRAYSA 171 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + Q L +SR TA RYLE+ A +GRP + Y Sbjct: 172 RELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 AP+ +L+V+D+ +A +H Y+ +P F+ + A + L+LLD +LPD Sbjct: 8 APVRVLVVDDDATVALVHRGYVETLPRFTVCGVVHRGADVLPAVRATAADLVLLDIHLPD 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+++L L DVV TAA D++TV +A+ GV+ YL+KP + + + + Sbjct: 68 ESGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYA 127 Query: 123 QRK---HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-----EP 174 Q + + D+ Q+++D + + R LP G+ P TL+ V + + Sbjct: 128 QHRLEFARRDGSDALGQEEVDRLLTSRRRS--ASALPKGLSPRTLDVVVDHLRAGAGGDG 185 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A +A I+R + RRYLE+ L +G+ GRP+ Y Sbjct: 186 TGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGYR 235 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ L++ED+ + + AE + PGFS + A +L QA +M+ +P L+L+D LPD Sbjct: 2 EPIFTLVIEDDERIGSILAELVSSTPGFSLLGRAESLTQADLMMRAAQPQLLLVDISLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ ++ L + V+ TA+ D+ET+ +A+ GV DY+IKP+ R+ Q+L Sbjct: 62 GSGLEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEIL 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYA-RGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTA 180 + S Q +D + +G + P GID +TL V +L EP + Sbjct: 122 TLHRRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFST 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +TVA L++SRTTARRYLEY S + ++ +G+ GRP+R YH Sbjct: 182 DTVALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRYH 225 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ + +H Y+ + F +I + +A+ M+++ L+LLD +L DG G Sbjct: 4 NILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEMLQKETIELLLLDIHLKDGNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + LL L + DV+ TAA + +S+++ G+ DYLIKP ++ER Q++ F+QR+ Sbjct: 64 LELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQQRR 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 +Q+QID + + P EL G+ TL +++ + T + +AQ Sbjct: 124 E-SLKHPRIAQQQIDLLLQGNQKS-PWIELEKGLTEDTLQLIQETIRTIKQPFTVQELAQ 181 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A +S + R+Y+ + I +E V+ K+GRP + Y Sbjct: 182 ACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQY 219 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----FKPGLILL 56 T P+++LIVED+ +AE H Y+ + GF+ +A A L+LL Sbjct: 3 TRPISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLL 62 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D LPD GI+L L D++ T+ D+E V AV G YL+KP + Sbjct: 63 DLGLPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRD 122 Query: 117 TLTRFRQRK-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG 175 L R+R+ + + ID+ASQ ++D + P G P T + + + ++ Sbjct: 123 RLERYRRYRDALPAGIDAASQTEVDRALAELRGSADRATAPKGTAPGTNDEIARAVRDSA 182 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA+ VA + +SR TA RYLE A + +G+ GRP+ Y Sbjct: 183 DGLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRYQ 231 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ +A ++ ++ ++ + + ++++ LILLD YLP G Sbjct: 4 KILIVEDDPMVALINKRFLENMGFKDILGPVQTEEEIIQLLDKENIDLILLDVYLPKKNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I++L L Y DV+ TAA+ +E V A GV DYL+KP +ER + + +++Q+ Sbjct: 64 IDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQKN 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP-GVQHTAETVA 184 ++L ++ SQ+ ID + + E K ELP G++ TL+ + + KE G T +A Sbjct: 124 NLLNKREALSQQDIDVISKSL---EEKIELPKGLNQKTLDRIMEFLKENKGKVWTLREIA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 L IS T ++Y++Y + + G VGRP+ Y G Sbjct: 181 YELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKYTLG 222 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +L+VED+ AE H Y+ +PGF+ + +AG A+A ++ + L+LLD L Sbjct: 1 MPELLRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVLSHGQIDLVLLDMNL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G++++ + A DVV T+A ++ V A R GV Y++KP A+E L L+ Sbjct: 61 PDGHGLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSA 120 Query: 121 F-RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + RQR+ A Q ++D + + +P G+ L+ V +L T Sbjct: 121 YARQRRAAESGQVVADQDEVDRLLHP----ATVSSVPKGLAGSVLDRVVQLLGNR-EGWT 175 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVH-GKVGRPQRIY 223 AE VA +L SR TARRYLE+ A + + + G+ GRP+ Y Sbjct: 176 AEEVATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEY 220 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 7/221 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + + +V+D+ +A++HAE+ +P F + +A + QAR +++ P L+LLDNYLPD Sbjct: 2 IRVAVVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELVDTRNPDLVLLDNYLPDRS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI LL EL D + TAA+D +V A+ G +YL+KP E+LG LT + + Sbjct: 62 GIALLAEL-----DVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAYARY 116 Query: 125 K-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + + Q +ID G+ + P G PLT V + +A + Sbjct: 117 RGRLPVTGGAVDQDEIDRAMRLLHEGD-RPAAPKGQSPLTSQLVLDALQRGESARSAAEI 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ L I+R TA+RYL A + +G GRP+ Y Sbjct: 176 AEELGIARATAQRYLAALAQDGKARMTLRYGASGRPEHQYE 216 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 210 bits (534), Expect = 5e-53, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 8/216 (3%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A++H+ Y+ + GF+ + +A N A A ER +P L+LLD YLPD GI +L L Sbjct: 1 MVAKLHSRYVSAMDGFAVVGVAHNGADALRAAERLRPDLVLLDIYLPDMDGIGVLRALRA 60 Query: 75 A------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 A D +F TAA D + A+R G YLIKP + L + + + L Sbjct: 61 AEERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRTRL 120 Query: 129 ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALT 188 + + A Q+ +D++F G ELP G+ T + V ++ + +A A+ Sbjct: 121 DRLGEARQEDVDQIFGTRPPG--SRELPKGLAAPTADLVERVLRSHPDGLSASECAEVGA 178 Query: 189 ISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR +ARRYLE+ A + +G GRP+R Y Sbjct: 179 LSRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRYR 214 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 210 bits (534), Expect = 5e-53, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 2/219 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE A H Y+ I GF +A + +A + + L+LLD +LPDG Sbjct: 2 IRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERALAKGGIDLVLLDLHLPDGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++L + A DV+ ++A D + V AV G YL+KP A+ L LT +R+ Sbjct: 62 GLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSYREF 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + Q + R LP G+ TL V +E G +A + Sbjct: 122 AEQVAGAEDVDQASVVRALGML-RAPNTGSLPKGMTKETLAIVVGALRELGDA-SATQIG 179 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L +SR TARRYLE+ A ++ + +G+VGRP+ Y Sbjct: 180 DFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRY 218 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 208 bits (531), Expect = 8e-53, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 4/225 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +TLLIV+D+ + + I GF + +A +A RF P L+LLD +LP Sbjct: 5 SKEITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREALAATRRFAPNLVLLDLHLP 64 Query: 62 DGRGINLLHELVQAH-YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 D G+++ H+L + P DV+ + + + V A++ G YLIKP + QTL R Sbjct: 65 DIPGLDVAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTLLR 124 Query: 121 FRQR-KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + H+ Q+ ID +F + PTGI P T V G + Sbjct: 125 YAAASAHLSAGASMVEQRAIDRVFRSL--HLDAVVRPTGISPATEQVVLDALAAAGRDLS 182 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A+A+ ISR TARRYLE+ A R ++A + +G GRPQ Y Sbjct: 183 AHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRYR 227 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 11/217 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + E++ ++I I GFS + A N + I++ P L+ +D ++P+ Sbjct: 4 INVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKIKQLTPELVFIDIFMPEQD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L ++ + H P DV+ TAA+DM TV + GV+DY++KP +ER+ QTL +R Sbjct: 64 GIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQTLKNYRSY 123 Query: 125 KHMLESIDSASQKQIDEMFNAY-----------ARGEPKDELPTGIDPLTLNAVRKLFKE 173 + + + +Q +D + +ELP G + TL+ V + Sbjct: 124 RKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDKVFAYIQT 183 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAE 210 G +AE V+ + +R TARRYL++ I + Sbjct: 184 SGGAVSAEEVSTYIGTARVTARRYLDFLEKPKSIKSR 220 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 3/211 (1%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A + +Y+ I GF LA +A+ ++E L+LLD Y+P G+ LL + + Sbjct: 1 MVASFNKQYVEEIKGFQLAGLAKCFDEAKQLLEENDIQLLLLDIYMPGKNGLELLQYIRK 60 Query: 75 A-HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDS 133 Y DV+ TAA D++++ A+R G DY+IKP +ER + LT +R++ +L++ S Sbjct: 61 ETAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQQS 120 Query: 134 ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHTAETVAQALTISRT 192 Q+++D + LP G+ P TL + + T + +A+ + ISR Sbjct: 121 LKQEELDASILHQQEKKNM-TLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQISRV 179 Query: 193 TARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + R+Y++Y + + +G +GRP +Y Sbjct: 180 SVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 5/221 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T++IVED+ + E++ Y F+ +A + L++LD Y+P Sbjct: 2 YTVVIVEDDPMITELNRRYAEKDGRFTVAQTFSQPRRALDWLRHNPADLVILDFYMPQMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + A DV+ TAA+D TV R GV DYL+KP AYER + L F +R Sbjct: 62 GLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAFCRR 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAETV 183 + + S Q +D + +A LP G+ T V + +PG +T E + Sbjct: 122 RSAMR--GSLDQTALDNLLHAVPPAP--ATLPKGMQAQTQERVLACMRDDPGHAYTCEEI 177 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A +S T RRY+ Y A + + ++ +G GRP +Y Sbjct: 178 AAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYR 218 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 206 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 106/209 (50%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A ++A Y+ +PGF A + A+A ++ LILLD+YLPD G++L+ L + Sbjct: 2 RVARINAAYVEKVPGFEVAARAHSAAEALELLSDRPVDLILLDHYLPDENGLDLVRHLRR 61 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 DV+ TAA D+ TV A+R G YL+KP + L L + +H LES A Sbjct: 62 RGDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGGEA 121 Query: 135 SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTA 194 Q ++D +F A + LP G P T VR++ + + + +A ISR TA Sbjct: 122 EQAEVDRIFGTLASAGTPNALPKGHSPTTAELVRQVLRSADGPLSTQQIADLAGISRQTA 181 Query: 195 RRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +RYL+ + + +G+ GRP+ Y Sbjct: 182 QRYLKLLDRTGRVTLALRYGETGRPEHRY 210 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----FKPGLILLDNY 59 + +LIV+DE +A+ H Y+ +P F + + A + L+LLD Sbjct: 2 IRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDIG 61 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPD G+++ L D++ T+A D+E V AV G+ YL+KP + L Sbjct: 62 LPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKLE 121 Query: 120 RFRQRKHMLESIDSA-SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 R+ + + L + +SA SQ ID +A + + P G TL V ++ Sbjct: 122 RYLEYRAALPAGESAVSQHDIDRAMSALRTSDDRAAAPKGFASQTLGLVAASVRDSEGPV 181 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA VA ++ +SR TA RYLE A ++ E +G+ GRPQ Y Sbjct: 182 TAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 113/224 (50%), Gaps = 15/224 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 + P LIVED+ +A +H ++ G +AG L +A +E P L+LLD YL Sbjct: 5 LVKPAQALIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREAWAFLEE-NPDLVLLDLYL 62 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ LL L V TAA D+ TV A+ G DYL+KP RL + L R Sbjct: 63 PDGHGLELLPAL----EGVYTVVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALAR 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 FR +++ + SQ +D + + + P G+DPLTL V L + G TA Sbjct: 119 FRAFQNLKAKKE-VSQADVDRLLG-------RRQAPKGLDPLTLGRVLALLQ-GGKPLTA 169 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E VA+AL +SR TA RYLE + AE +G GRP R Y Sbjct: 170 EEVAEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYR 213 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 3/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++IVED+ +A ++ +Y+ P FS + + A + R + LI+LD Y+P Sbjct: 2 YSVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQDALSWLSREEVDLIILDYYMPLMT 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G + L V+ T+A D V E + GV DYL+KP R Q L+RF Q Sbjct: 62 GQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRFAQT 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFKE-PGVQHTAE 181 + L+ +Q +ID + + P + EL G+ TL +R K PG ++E Sbjct: 122 RSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELFSSE 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A+ + +SR T RRY+ Y I++ + + GRP Y Sbjct: 182 QIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 203 bits (516), Expect = 6e-51, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 1 MT-APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MT AP+ LIVED+ +A++H + GF + A L AR M +P L+LLD + Sbjct: 1 MTRAPIRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAMSRTLRPDLLLLDVH 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPDGRG++LL EL D V TAASD +V A+ G DYL+KP ER L Sbjct: 61 LPDGRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALE 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 R R+R + D Q +D +F P + +G+D TL VR ++ G HT Sbjct: 121 RVRERAALWAQRD-VRQGHLDALF------TPLADDASGLDAETLRRVRAALRD-GAAHT 172 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ V QAL +SR TA RYLEY ++ + A VGRP + Y Sbjct: 173 AQEVGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 10/225 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +L+++D+ +A +HA + PGFS + A LA+A+ +I F P L+L+D YL Sbjct: 1 MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ D +AA D++TV A+R G YL+KP +RL + L R Sbjct: 61 PDGDGIDLVGT-----SNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +H+L SQ +ID+ + + T + + G + +A Sbjct: 116 YVRYRHVLSGTQGLSQDKIDQATAILNGTQAPVTVSRS---ATEQLLLDALE--GQELSA 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 ++A +SR TA+R L AS+ +I + +G+ GRP+ +Y Sbjct: 171 TEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSK 215 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ LI ED+ ++ + + + F + A N +A I K L+LLD +P+ Sbjct: 2 KPVRTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQIRAHKVDLVLLDLSMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G ++ + DV+ T++ EA+R G +DY++KP +Y+RL +L ++ Sbjct: 62 VDGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYK 121 Query: 123 Q-RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDP-LTLNAVRKLFKEPGVQHTA 180 ++ +Q+Q+D +F Y +GI T + + + +A Sbjct: 122 DAFRYRASLPAELAQEQLDRVF--YPESRLNLYSTSGIQRGDTAQRIMDVLSQEERPLSA 179 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A + ISR T R+Y E S +IA+ + GRP + Y Sbjct: 180 GEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 198 bits (505), Expect = 9e-50, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 7/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + +H Y+ I F IL + +++ A+ + +F LILLD ++ DG Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLVQFSIQLILLDIHIKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+NLL + H +V+ +AA+D + G+ DYLIKP ++R +++ RF Sbjct: 61 GLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFFDH 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDEL------PTGIDPLTLNAVRKLFKEPGVQH 178 + L + Q ID + + + + G+ T + + Sbjct: 121 QKQLNQM-VIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTYQLIIDAIQRLSKPF 179 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T + + + +S + R+Y+ Y + +++E ++ KVGRP ++Y Sbjct: 180 TIQDLTEETCLSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQ 225 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 3/225 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TA + + ++ED+ +A H ++ + GF I A L Q +I+ KP L+LLD ++ Sbjct: 14 TAVIKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLIQTQKPDLLLLDVFVG 73 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+++L + DV+ T+A+D +TV R GV DYLIKP ++ R + L R+ Sbjct: 74 QENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRY 133 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 R L++ S +Q+ +D + + + + LP GI T V E A Sbjct: 134 --RASQLDANASFTQQDVDRLLHKGGQRKVY-ALPKGIAKETAIRVLSCLIEADDSLAAA 190 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 + IS + R+Y+ + L+ E+V+ GRP + Y + Sbjct: 191 ELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKAS 235 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +A +H EY + + ++ AR + LI+LDNYL DG+ Sbjct: 1 MRVLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANNDVDLIVLDNYLIDGQ 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L EL ++ TAA+D++TV A+ GV DYL+KP YER Q + + + Sbjct: 61 GIEYLPELKGY----PIIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQDY 116 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +L S + +Q IDE N+ E +D LP G+ +TL V + K+ T + +A Sbjct: 117 VKLL-SKEKINQDLIDEYLNSGRIEEDEDNLPKGLSRITLKKVLEAIKQHNSGFTTQQIA 175 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L ISR T R+YL + + +++ + + GRP ++ Sbjct: 176 DKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVF 214 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 120/234 (51%), Gaps = 11/234 (4%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-------RFKPG 52 MTA P +L+VEDE AE + ++ +PGF +AG+L AR + RF Sbjct: 1 MTARPYRVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFD 60 Query: 53 LILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 ++LLD LPDG G++ LH+L A + G V+ TAA+D+ V AV GV YL+KP ++ Sbjct: 61 VVLLDMNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFD 120 Query: 113 RLGQTLTRFRQRKHMLESIDSAS-QKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF 171 L FR ML + Q+Q+D +F +R + LP G+ TL V L Sbjct: 121 EFADRLGGFRAASAMLAGDGALEGQEQVDAVFR-VSRERRAEALPKGLTEGTLREVMDLL 179 Query: 172 -KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +P +A V + L ISR TARRYLE+ + HG GRP++ Y Sbjct: 180 GADPETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYR 233 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLI+ED+ +A +H +Y+ + I +A+ ++ + +P L+LLD +L DG Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEGLLLTKEKQPALVLLDVHLKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + +V+ TAA+++E V ++ GV DYL+KP ++ER Q++ ++++ Sbjct: 61 GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK 120 Query: 125 -KHMLESIDSASQKQIDEMFNAYARGEPKDELP-------TGIDPLTLNAVRKLFKEPGV 176 SQ ++D++F+ K+E G+ TL + K E Sbjct: 121 TAQFTLETKELSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDEFTD 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T + +++A +S + R+Y+ + +L+ ++ + KVGRP + Y Sbjct: 181 YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYR 228 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 10/223 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ L +L+V+D+ +A++HA + PGF+ + A +A+AR+ + L+L D YL Sbjct: 1 MSRTLQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEARVFLAEHPVDLLLADIYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L D +AA D+ TV A+R G YL+KP L L R Sbjct: 61 PDGDGITLARA-----SDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +H+L SQ+++D+ + + T + + +A Sbjct: 116 YARYRHVLSGSQGLSQEKVDQALAILNGAQAPTPVSRS---ATEQLLLDAL--GDGELSA 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+ +SR TA+R L AS L+ + +G+ GRP+ +Y Sbjct: 171 SEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I+ED+ + E++ ++ I GF A NL +A I + K LILLD YLP Sbjct: 2 IKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLDIYLPREN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L +L + D + TA +++ EA+ G DY+IKP + R +T +R + Sbjct: 62 GLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNYRGK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARG--------EPKD--ELPTGIDPLTLNAVRKLFKEP 174 LE++D Q +D++ + G EP++ L G++ T + + + Sbjct: 122 YIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHIHKR 181 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TAE +A+ + ++R T R+YLEY + + ++ +GKVGRP+ Y Sbjct: 182 QNYFTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEYK 231 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDG 63 +LIV+D+ +A++ + P F +A +L QA+ +I K LILLD Y+ Sbjct: 3 NVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYINKD 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L H DV+ +AA D T+ +++ GV DYLIKP RL +LTR++ Sbjct: 63 NGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRWKH 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDEL-PTGIDPLTLNAVRKLFKEPGV-QHTAE 181 +K +LES +Q ++D + + K P G+ TL + + E + T Sbjct: 123 KKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEHQHKKFTLN 182 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A + ISR + R+Y+ + S H++ + G GRP Y Sbjct: 183 ELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRPAYRYW 225 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ +A ++ EY+ + + K LI+LD +L + G Sbjct: 3 NVLIVEDDPMVAMINEEYLSSFQNIKVLGRTFTEKDTLDFLTTHKVDLIILDVFLGEENG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L ++ Y DV+ T+A+ E + +A G DYLIKP +ERL ++ + R Sbjct: 63 IEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKIFTRD 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETVA 184 +L Q ID + + LP G++ TL V ++ P + + + Sbjct: 123 EILNK-SKVKQDSIDNIHS----TPSSLNLPKGLNSKTLEKVTQIISNLPNEEFGIKDIC 177 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 Q IS T ++YL+Y + I + +G +GRP +Y Sbjct: 178 QITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLYKK 218 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 4/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VE+E A++ +++ + F+ A A A + L+LL +LPD Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADALRRLAPGHVDLVLLGVHLPDMS 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 ++LL L A VV TA D+ + A+ GV YL+KP + + + L ++ Sbjct: 61 WLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVREQLEKYEAY 120 Query: 125 KHMLESIDSA-SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG--VQHTAE 181 + + + Q+++D++ R ++ LP GI +L AV K +A Sbjct: 121 RSLRNVGELVLVQQEVDQLLGVL-RDADENRLPKGISRESLQAVTAALKRCSGLGGVSAA 179 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA+AL ISR T RRYLE+ + + GRP+ Y Sbjct: 180 EVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEY 221 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 6/215 (2%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A+ +A ++ IP F + +A + + + LILLD Y+ + G++LL EL + Sbjct: 1 MVAKFNAIFVERIPEFKLVGVARGIEEGWTYLNEEAVDLILLDVYMTNENGLDLLMELRR 60 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 ++P DV+ ++A+D ++ A+R G DYLIKP ++R L R++Q ++ Sbjct: 61 ENHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQ-DMKKEAI 119 Query: 135 SQKQIDEMF---NAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTI 189 Q+++D +F + PK + LP GI T V + + + + A I Sbjct: 120 QQEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDWFSTNDLVDATGI 179 Query: 190 SRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 SR + R+YL+Y + +++ ++ + + GRP Y Sbjct: 180 SRVSLRKYLQYLTNSDILLFDVDYQRTGRPLHQYK 214 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 193 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 2/218 (0%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +I+ED+ + I P F ++++ A M + +KP L+ +D LPDG GIN Sbjct: 1 MIIEDDPKASYALESIIHQHPDFEVVVVSETYQDALMHYDLYKPQLVFVDITLPDGSGIN 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 ++ +L + TTA + TV + V+ GV DYL+KP+ R+ Q L ++ + Sbjct: 61 VIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYRQK 120 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG-VQHTAETVAQA 186 L ++ Q ID + P P GID TL+ ++ + ++ + + + ++ Sbjct: 121 LACHETMDQCVIDHILGK-RTNLPMRRTPKGIDANTLDTLKDILRKEQLTEFSGDDISDR 179 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +SR T RRYLEY S +I + + GRP R+Y Sbjct: 180 MNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQ 217 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 193 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE----RFKPGLILLDNYL 60 + +L+VED+ LA HAE + +PGF + + +A + L+LLD L Sbjct: 2 IRVLVVEDDPLLAAGHAEKVAAVPGFEVVAAVHSGREALAAVGAAGADTPIDLVLLDMTL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ +L L A P DV+ TAA + TV +A+ GV YL+KP + L + L Sbjct: 62 PDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEERLRA 121 Query: 121 FRQRK---HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP--G 175 + + + Q+ IDE + P G+ TL AV + Sbjct: 122 YARFRADVAAASGEHGIDQQAIDEALSQLRTAAPGR----GVAAPTLQAVVAALRTAPSS 177 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A VA A +SR +ARRYLE+ ++ + E +G GRP+ Y Sbjct: 178 QGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 8/218 (3%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A ++ ++I G I GN+ + +I + P LILLD YLP GI+ L + Q Sbjct: 1 MVAMINQQFIGRFKGLRIIASVGNIGELWNIINKNVPDLILLDVYLPGETGIDFLQTVRQ 60 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 ++ TAA D+ T+ +++ GV D+LIKP +YER + F Q + ++ Sbjct: 61 KQLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLEET 120 Query: 135 SQKQIDEMFNAY--------ARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 Q +D++ A E ++ G+ +TL + + + + E + + Sbjct: 121 DQDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGYFSTEDITKK 180 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +SR + ++YL + + E+ + VGRP ++H Sbjct: 181 VDLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFH 218 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+V+D+ +A MHA+ + +PG + A +++AR +I R + L L+D YL Sbjct: 2 MTDEIRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARERVDLALVDVYL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ EL D AA D ++ G YLIKP L + + Sbjct: 62 PDGSGIDLVRELR-----CDAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGG 116 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +++ + +Q+QID +A + G +T + ++ G A Sbjct: 117 YTSYRRIVDG-GAITQEQIDAAASALRSERVVPKRDDG-GSVTERRIVDALRDAGSPLLA 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + +A+ + +S TARRYL + + +G GRP++ Y Sbjct: 175 DEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRY 217 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 5/221 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI ED+ +A +H I P F I +A Q + +P L+LLD L G Sbjct: 5 RVLIAEDDPDVARLHRLLIERHPAFKAIGVAEAGEQVLRDVATQRPDLVLLDLELRGMDG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L + + Y +V+ TAA D E V +R G+ DYL+KP ER+ L RF +R Sbjct: 65 LEVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFSERV 124 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + +Q + A + + LP G+ TL+ +R+ G + + + Sbjct: 125 A-GLPGSTVTQAA---VDAALGAADARRLLPRGLQADTLDRLRQELAHAGEWLSTQELGG 180 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIV-HGKVGRPQRIYHS 225 + ++ T RRYLEY + + +G GRP+++Y S Sbjct: 181 RVDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYRS 221 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 6/225 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LI+ED+ + ++ ++ IP I+ + A + + LILLD YLP Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYTLILLDMYLPQ 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G L EL+ V+ TAA+D +T+ EAV GV D+LIKP ++R Q + +F Sbjct: 61 LSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAKFT 120 Query: 123 QRKHMLESIDSASQKQIDEMF---NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + + + + SQ +D +F ELP G+ L+L + + Sbjct: 121 RLLAVDDKH-TVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTALATLKPGFS 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + VA +SR + ++Y+++ + + + IV+ GRP + Sbjct: 180 NQDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQ 224 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 9/223 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + L++L+V+D+ +A MHA + +PGF+ A +A AR L L+D YLPD Sbjct: 4 SDLSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAAREA---PAVDLALVDVYLPD 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G GI+ + EL + TAA++ ETV A+ G YL+KP L L+ + Sbjct: 61 GSGIDFVRELRSDS-----MILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYA 115 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + +L + S + +D +A + T V + K +A Sbjct: 116 RYRKILAGAN-LSARDVDAALDALRPRLAPAQSSATAASPTKQLVLQALKTSQTPMSAAE 174 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 VA A+ ISR TA+RYL AS + + +G GRP++ + + Sbjct: 175 VAAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRPEQEFAA 217 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 7/223 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+++D+ + ++H Y+ + GF + +L AR +I + L+L D LP+G Sbjct: 2 INVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTIIAEEQVDLLLADYVLPEGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ E D + +A +D + V A+R G Y+ KP A E L L R+ + Sbjct: 62 GVELIRE-----TDVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRYARF 116 Query: 125 KHMLESIDSASQKQIDEMFNAYAR-GEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + SQ ++ + P G T + + + TA V Sbjct: 117 RRYWDR-EKVSQPDLERQLRSLHDVASPGSAPAKGSGSSTSGRILEALESADQPLTAMEV 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ++ + SR TA+R+L A + + +G GRP+ +Y G Sbjct: 176 SEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLYGMG 218 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 7/205 (3%) Query: 19 MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYP 78 ++ + + +A ++AQAR ++ L L+D YLPDG GI+L+ EL P Sbjct: 34 AVCHHLNSLDQYEVAAVATSIAQARELLTTQSFDLALVDVYLPDGSGIDLVREL-----P 88 Query: 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQ 138 D V +AA+D TV A+ G + YLIKP L LT + + L+ D +Q Sbjct: 89 CDAVVLSAAADQATVRSAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQAD 148 Query: 139 IDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYL 198 ID +A +T + V + +A VA A+ ISR TA+RYL Sbjct: 149 IDGGLDALR--PRAAAPLPASQSVTRDLVLDAVRGTAEPMSAGEVAAAIGISRATAQRYL 206 Query: 199 EYCASRHLIIAEIVHGKVGRPQRIY 223 S+ + ++ +G GRP++ Y Sbjct: 207 ATLVSKGRLRMQLRYGSTGRPEQEY 231 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 12/226 (5%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-------ERFKPGLILLDNYL 60 L+VEDE A HA+YI I G+ +A N QA + + L+LLD L Sbjct: 2 LVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMNL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ + + D++ TAA DM+ V EA+ GV Y+IKP + L Sbjct: 62 PDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLEA 121 Query: 121 FRQRKHM---LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + ++ + +Q +D A R G+ V+ + + Q Sbjct: 122 YSSYRNSLGGDSTEGEVTQTDVDTAIAAL-RTHTVTATAKGVPDAVQAEVKSVLGDKPGQ 180 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A VA+ L +SR TARRYLE A ++ +G GRP Y Sbjct: 181 -SAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRPVLEY 225 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 8/224 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK-PGLILLDNYL 60 + L +LIV+D++ +A +HA + + GF AG++A AR + L LLD YL Sbjct: 14 SGDLAVLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAALADHPHVDLALLDVYL 73 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ +L P D A +D V A+R G YLIKP L + L Sbjct: 74 PDGSGIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAG 128 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + Q + +L+ + Q+ +D +A G + P T + +LF A Sbjct: 129 YAQYRRVLD-AEHVDQRAVDGALSALRFGTRPADRDDPGSP-TEKRILELFAAADGPLFA 186 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + V+ A+ ++ TARR+L + + + +G GRP++ Y Sbjct: 187 DDVSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEYR 230 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 8/221 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + L +LI++D+ +A +H Y+ +PGF + +L +E +P L+L+D Y P Sbjct: 2 SDLRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDLRAVAAAVEEHRPDLMLVDVYFPQ 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+++L + D +AAS+ TV+ A R G YL+KP E L L + Sbjct: 62 GSGLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRAYA 116 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + L++ SQ ID A + D T +AV + G + T Sbjct: 117 RYRRQLDAPGPLSQSAIDRARRAMTGSD--DAPAGTAASATESAVADAVAD-GGEVTVMD 173 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA+A+ ISR TA+RYL R + E+ +G GRP+ Y Sbjct: 174 VARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 4/228 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +LIVED+ + ++ +Y+ + G + ++ A ++ L+LLD YL Sbjct: 1 MKTALRVLIVEDDPMVMRLNVDYLARLDGIELVGQCASVPAALELLADETVDLLLLDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 + G+ +L L D V TAAS++ETV A R GV DYL+KP ++ER + Sbjct: 61 RNRSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDAVES 120 Query: 121 FRQ-RKHMLESIDSASQKQIDEMFNAYARGEPKD--ELPTGIDPLTLNAVRK-LFKEPGV 176 R+ R + + Q ID +F+ A + + +LP G+ P +L V + + Sbjct: 121 CRRARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILALEED 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T+E + A +SR + R+YL++ L+ +G++GRP Y Sbjct: 181 SFTSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 179 bits (455), Expect = 7e-44, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 7/229 (3%) Query: 2 TAP-LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQAR-----MMIERFKPGLIL 55 T P L +LIVEDE +A+ H E++R I GF I +A L+L Sbjct: 3 TQPELRVLIVEDEPLIAQAHREFLRRIGGFEVIAAVRTGQEALRVAGSAAASATPVDLVL 62 Query: 56 LDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG 115 LD LPD RG+++ L D++ TA ++ TV A+ GV YL+KP + Sbjct: 63 LDLGLPDARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLLYLLKPFTFAAFE 122 Query: 116 QTLTRFRQRKH-MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP 174 + + ++R+ + + + D+ SQ+ +D + + + G P T +AV + ++ Sbjct: 123 EKIGQYRRYRQALSGAGDAVSQRDVDRAVSELRTTSTRRTVKKGAVPETEDAVGRAVRDS 182 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TA VA L SR TA RYLE A ++ +G GRPQ Y Sbjct: 183 TGGLTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVRY 231 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 8/223 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYLPD 62 P LLI ED+ + ++ +++ + G S + + + + R + L+LLD YL Sbjct: 3 PYGLLIAEDDPSMVRLYKAFLQGVEGVSLLGVTPSGEELLRYFRRGGRAELLLLDIYLEG 62 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+++L EL DV+ T+ S TV EA+R GVFDYL+KP R G+ L Sbjct: 63 SNGVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALDDLV 122 Query: 123 QRKHMLESIDS-ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + ++ ++S SQ ++D++ G ++ELP G+ TL + L G T + Sbjct: 123 AFRRRIDRVNSRMSQDELDKLL-----GGGEEELPKGLHRSTLKGILSLLSCFGEA-TVD 176 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +++ + +S+++ RRY++Y + + H GRP +Y Sbjct: 177 RLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYR 219 >UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939E4 Length = 321 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 10/217 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T+L++ED+ + E++ ++I + GF I A ++ ++ +P LI LD Y+P Sbjct: 10 YTVLLIEDDPMVQEVNRQFIERVEGFRVIGTAATGSEGLRLVRELEPDLIFLDIYMPSQD 69 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G L +L P DV+ TAA D T+ + +R G+ DY+IKP +ER+ L +FR Sbjct: 70 GTEALRKLRAEALPVDVIVVTAAKDAPTIRQMIRKGIRDYIIKPFKFERVRDALEQFRAH 129 Query: 125 KHMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVRK--LFKEPGVQHTA 180 L + + SQ ++DE+ + GE + G+ + R+ + E G+ Sbjct: 130 HTALMAEGTLSQVELDEILHRTGERSGEYSESGAEGLACWPQDYFRRGKSYDEAGLYFEG 189 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVG 217 + + + R+ + + A +V GK G Sbjct: 190 QDIQETAG------RKSQDISSDSSRDKAALVEGKPG 220 Score = 82.9 bits (204), Expect = 8e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Query: 136 QKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTAR 195 Q I E + LP G++P T+ + ++ +AE VA + I+R TAR Sbjct: 227 QSAIAEN-QPLEKFPDLSNLPKGLNPATMRQIIYFVRQQKKALSAEEVADGVGIARVTAR 285 Query: 196 RYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 RYL+Y + I +G +GRP Y Sbjct: 286 RYLDYLEKSRQVRLVISYGGIGRPINRYE 314 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ LIV+ + LAE + IPGF+ + + + A+A + R P L+LLD LPD Sbjct: 4 EPIRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALEFVSRGHPQLVLLDLLLPD 63 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + L D++ T+ASD+ TV A+ GV YL+KP++ L L RF Sbjct: 64 TTGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFA 123 Query: 123 QRKHMLESI--DSASQKQIDEMFNAYARG-EPKDELPTGIDPLTLNAVRKLFK-EPGVQH 178 L + SQ ++D A P + P G+ TL++V + G Sbjct: 124 AAHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPA 183 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AE +A A+ +SR TARRYLE+ A L I +G+ GRP +Y Sbjct: 184 SAEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLYR 229 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 175 bits (445), Expect = 8e-43, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ A+ H Y+ + GF+ +A A A +ER L+LLD YLPDG Sbjct: 2 IRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHTRAAAVRALERTPVDLLLLDLYLPDGH 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL L + + DV+ T+A D+ V E V GV Y++KP Y L L R+ + Sbjct: 62 GLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFTYPTLRDRLVRYAEF 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +++ Q+++D A P LP G+ TL AV + KE TA Sbjct: 122 RGA--AGEASGQEEVDRALGALRVAHPA-ALPKGLSGPTLEAVTGVLKESPEGVTAAAAG 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + L ISR TARRYLE+ + +G+VGRP+ Y Sbjct: 179 ERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHYR 218 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 108/220 (49%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 L ++++ + + E H + + +PG +L + A ++ + L+LL+ L Sbjct: 3 LKAVVLDSDPVMLEAHEDVLSLVPGCMVVLSTVSARSALEVLCGDETVLLLLELKLSGAD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + P DV+ T A D T+ +A+R G+FDY+IKP RL ++ + Sbjct: 63 GLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVESYAAM 122 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 L + +Q +D+ P D+LP G+ LT+ V E +AE VA Sbjct: 123 YVTLCGKQAVNQAWVDDHVFRRFPNLPADKLPKGLHRLTMEQVVLFLGENIAGVSAEEVA 182 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SR TARRYLEY A L ++ +G +GRP Y Sbjct: 183 RGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYR 222 >UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD13_CARHZ Length = 205 Score = 159 bits (403), Expect = 6e-38, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 17/220 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI++D+ + E I + + + A N A R KP ++L+D ++P Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMG--WEAIKAENGAIGIEKFVREKPDMVLVDYHMPALD 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ + + + ++ T + + + G D+ +KPI L L + Sbjct: 59 GLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDLIARLKVHARM 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S + Q L GI+ T N + + KE T E + Sbjct: 119 IEINRSQEKKDQDGF---------------LAKGINKKTFNLIVEYLKEQKEPQTIEEIT 163 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + ++ T RYL Y + ++ E +G++GRP+ Y Sbjct: 164 EGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKNKYK 203 >UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CZ21_9BACE Length = 1393 Score = 156 bits (394), Expect = 6e-37, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 12/201 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++LIVEDE + + + ++L N +A +I P L+L D +P+ G Sbjct: 1133 SILIVEDEDEIRNYL---LTELGSHFRVLSCSNGKEALDLIMHHMPDLVLSDIMMPEVNG 1189 Query: 66 INLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 I LL +L Q V+ TA + + E + G Y+ KP + L T+ + Sbjct: 1190 ITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLIK 1249 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +L + S Q+Q D + A+ + DE + L + K P AE + Sbjct: 1250 NREILRNNFSGKQEQNDNI--EVAQPQSADEK---LMQKVLKVINKNLNNPD--LNAEMI 1302 Query: 184 AQALTISRTTARRYLEYCASR 204 A + ISR R L+ ++ Sbjct: 1303 AAEVGISRVHLYRKLKELTNQ 1323 >UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNS9_9CLOT Length = 273 Score = 155 bits (393), Expect = 9e-37, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 8/213 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L ++IVEDE + + + + G + A + A+ I R +P ++L D +P Sbjct: 3 LKVVIVEDEEIIRKGLTFALNWLDMGCIIVGTAKDGAEGLETIRREQPDIVLTDIKMPKM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ ++ ++ + T+ S+ E +A+ GV DYL+KP+ + L ++L + RQ Sbjct: 63 NGLKMIETAIKDQQFYS-LVLTSYSEFELARQAIHMGVTDYLLKPVDEDELKESLDKIRQ 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDP---LTLNAVRKLFKEPGVQHTA 180 + + + D + Y + D +DP T V++ +KE + + Sbjct: 122 QIAYASKYEKIEKISQDRLLTVYDEWKIFDSAKNSMDPYVKRTYEFVKQHYKE---KVSI 178 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVH 213 VA++L +S + R L+ + + + Sbjct: 179 NQVAESLGVSTSYLSRKLKAGLNTTFVDLLNQY 211 >UniRef50_A5UQ67 Response regulator receiver modulated metal dependent phosphohydrolase n=2 Tax=Roseiflexus RepID=A5UQ67_ROSS1 Length = 513 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 15/201 (7%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+++L+VED+ + A + H+ G+S + N +A M++ + L+L D +P+ Sbjct: 10 DPVSILVVEDDPMVNSFCARLL-HMKGYS-VKTVFNGREALTMLQTNRFDLVLTDLQMPE 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL E+ + H D + TA + +ET EA++ G FDYL KP + + L +T+ R Sbjct: 68 MGGMELLREMREQHPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRRAV 127 Query: 123 QRKHMLESIDSASQK----QIDEMFNAYARGEPKDELPTGI-----DPLTLNAVRKLFKE 173 + + + + S+ +I + F + E G+ P TL+ + Sbjct: 128 EWRRVRQERQRLSEVVALYEISQAFTSTLDTETAVNEIVGLLWRRFSPATLSLSLVHPDD 187 Query: 174 PGVQHTAETVAQALTISRTTA 194 ++ +A T SR Sbjct: 188 NELEL----LALRGTASRVAV 204 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 2/197 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +P+ +LIV+D + P F + A + ++A + + P +IL+D LP Sbjct: 2 SPINILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPG 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + L + V+ T D E + A+R G Y K I E+L +TR Sbjct: 62 MNGLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVA 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTG-IDPLTLNAVRKLFKEPGVQHTAE 181 + ++++ + + + + + D +G PLT + ++ ++ + Sbjct: 122 RGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREI-EILDCVARGYSNK 180 Query: 182 TVAQALTISRTTARRYL 198 +AQAL IS T + ++ Sbjct: 181 EIAQALNISDQTVKNHI 197 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 152 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 6/204 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D +R PG + AGN +A + +P + LLD ++P Sbjct: 10 IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMPVCN 69 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ ++ +A+ ++ T + E + EAV+ G Y++K ++ ERL + + + + Sbjct: 70 GLETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG 129 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + ++ S S + K I E P E + LT R++ + + + +A Sbjct: 130 EPVVPS--SLAMKMIAEFSRTAETRMPSSE---SVTELTERE-REVLQYLSAGASNKEIA 183 Query: 185 QALTISRTTARRYLEYCASRHLII 208 +AL IS T R ++ + + + Sbjct: 184 RALFISENTVRNHVRHILDKLHLS 207 >UniRef50_Q4L8V4 Sensory transduction protein lytR n=60 Tax=Bacilli RepID=LYTR_STAHJ Length = 256 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 7/193 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LIV+DE + I GF+ I A N+ + + L+ LD L D Sbjct: 1 MKTLIVDDEPLARNELHYLLNEISGFNVIDEAENIEETLEKLLSETYDLVFLDINLMDES 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+L ++ + P ++F TA +A DY++KP ER+ Q + + + + Sbjct: 61 GIDLAQKIKKMKQPPHIIFATAHDTF--AVKAFELDAIDYILKPFELERIEQAVNKVKHQ 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ID + + R E +D+ + P+ +N + ++ + TA +V Sbjct: 119 ISNSNEIDHITSEPSTLSMQQDDRQENEDQT---VLPIEMNERIYVIRKDDI--TAVSVN 173 Query: 185 QALTISRTTARRY 197 +T TT R Y Sbjct: 174 NGITTINTTHRTY 186 >UniRef50_A0LMH7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMH7_SYNFM Length = 460 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M +LIV+DETP + ++ A A+ + ER +P LILLD L Sbjct: 1 MREKHKILIVDDETPFRSALRRLLEKN---HIVMEAETGAKGLEISEREEPDLILLDIGL 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ LL + VV TA ++ V A++ G FDYL+KP+ + T+ Sbjct: 58 PDMSGLELLPRFKEQRPSPTVVMITAYERIKDVVMAIKRGAFDYLVKPVDIDEFELTIQN 117 Query: 121 FRQRKHMLESIDSASQKQ-----IDEMFNAYAR 148 + + +D Q+ +D + + Sbjct: 118 ALEHAGLKNEVDRLRQQVQKLHGVDRLVGKDPK 150 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 2/136 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTA +LIV+DE + M + + GF + A N A + P ++L+D + Sbjct: 1 MTAINRILIVDDEDNVRRMLSTAFA-LQGF-ETHCANNGRTALHLFADIHPDVVLMDIRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ GI L E+ V+ TA +++ET EA+RCG FDY+IKP + L + R Sbjct: 59 PEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQR 118 Query: 121 FRQRKHMLESIDSASQ 136 Q + M + I Q Sbjct: 119 ALQLQSMKKEIRHLHQ 134 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 149 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE + E + + N A + R +P +IL D +P Sbjct: 1 MKILIVDDEPIVREGLKNNVSWQELDLRVVGCEANGKSALDVFNREQPDIILTDIRMPFM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-R 122 G+ L E+ + V+ +A D + +A+R G FDY++KPI + L +T+ R Sbjct: 61 DGLELTREVKKLDPLVVVILLSAYDDFKYAQQAIRLGAFDYILKPIDIDTLKETVRRAVL 120 Query: 123 QRKHMLESIDS 133 +RK +L+ Sbjct: 121 KRKELLDKKKE 131 >UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A6BJV8_9FIRM Length = 508 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 4/154 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + + ++EDE P+ E + I P + + A N A+ +++E P LI+LD +PD Sbjct: 1 MKIAVIEDEKPIREGLVHILNKISPEYQVVGSAKNGAEGLILLEEEMPDLIMLDIQMPDM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ +L E V+ TA SD +A+ G+ +YL+KP+ L +TL + ++ Sbjct: 61 DGLQMLKEARARGIYTKVIILTAYSDFSYAKKAIELGIENYLLKPVNLTELKKTLEKIKE 120 Query: 124 RKHMLES-IDSASQKQI--DEMFNAYARGEPKDE 154 + + +S S ++I D + Y + E D Sbjct: 121 ELFVEQRGKNSLSLEKILKDILDGEYEKNERLDA 154 >UniRef50_Q893H5 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q893H5_CLOTE Length = 259 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 14/196 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 ++I +DE + I S I A + +A +IE++ P +IL+D +P Sbjct: 2 FRIVIADDEDTIRNGLKNLIESYELNLSVIATAKDGEEAMKVIEKYHPEIILMDINMPFM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++++ + + + ++ + S E +A+ GVF+YL+KPI Y L + Sbjct: 62 NGLDVIKGIHERNKDAKIIIISGYSQFEYAQKALELGVFNYLLKPINYRDFKDILIKA-- 119 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +DS S++ + + G+ K E + L ++ ++K F + V Sbjct: 120 -------MDSYSKRMWE--ISKIKEGKEKIESCKDVGNLAISYIKKNFSNNEISL--NLV 168 Query: 184 AQALTISRTTARRYLE 199 AQ IS++ R ++ Sbjct: 169 AQQFYISQSYLTRVIK 184 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 9/195 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + M A + G+ Q+ A N AQA M+ + IL D +P G Sbjct: 10 NVLVVDDEENMRHMLAAMLTR-EGY-QVETAANGAQALEMVAKQPFDFILCDIKMPRMDG 67 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L + V+ +A ++T EA++ G +DY+ KP + + L + +R+ Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + Q QI + Y G+ + + AV L + T V Sbjct: 128 RLKRENIALRQ-QIATLGRGYTFGKIIAKSKA------MQAVTDLITKVAAHDTTVLVTG 180 Query: 186 ALTISRTTARRYLEY 200 + R L + Sbjct: 181 ESGTGKELVARSLHF 195 >UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=C6BRJ1_DESAD Length = 656 Score = 147 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 89/209 (42%), Gaps = 9/209 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +++V+DE L + + + A N +A ++E F P +I+ D +P G Sbjct: 12 KIMLVDDEEGLRRFLG--LTLMDFGYTVETAENGVEALKLLENFHPDIIVTDIKMPRMDG 69 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I+LL + + H +V+ T D++ E+++ D++ KP+ + L +L R ++ Sbjct: 70 IDLLKAIKEDHPHIEVIMLTGHGDLDLAIESLKNDAADFITKPVDDDVLELSLERVMEKI 129 Query: 126 HMLESIDSAS---QKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 H+ + + +K ++E + E ++ ++ +T + Sbjct: 130 HLKRQVKEYTENLEKMVEEKTSRIVELERQNAACQVVEGITDALSNAAHEVESESSMFNE 189 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEI 211 + ++I RYLE A+ L+ + Sbjct: 190 LPCLVSIHN----RYLEIVATNKLLKERL 214 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 147 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 13/200 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M PL +LIV+D+ + ++ + + G + + L + A+A M+ R LI+ D + Sbjct: 1 MPDPL-ILIVDDDLRMRQLIRDTLAS-EGINAV-LCSDGAEAAEMVLRQTTDLIITDLMM 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ LL+ +QA+ VV T +E+ +A++ G +DYL KP ++L + R Sbjct: 58 PQIDGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQR 117 Query: 121 FRQRKHMLESIDSASQK----QIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 R + + Q+ Q DE+ A + L T I P + + G Sbjct: 118 ALVRLRLQDENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQ-----GE 172 Query: 177 QHTAETVAQALTISRTTARR 196 T + +A + I R + RR Sbjct: 173 TGTGKELAARM-IHRLSQRR 191 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 147 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 2/135 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++LIV+DE + + + GF + A N +A + + P L+LLD ++P G Sbjct: 4 SILIVDDEPSILDSLGGILTD-EGFEVV-TALNGYEAIKQLSKISPDLMLLDIWMPGMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L ++ + H VV T +ET +A + G +D++ KP++ E++ T+ + Sbjct: 62 LETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFR 121 Query: 126 HMLESIDSASQKQID 140 + E +K ++ Sbjct: 122 RLEEENLYLRKKALE 136 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Query: 6 TLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +L+V+DE + + I + G + A N +A ++E L+L D +P Sbjct: 4 KVLLVDDEPHITRNLEKVIPWEMLGLTVGGTAKNGVEALELLESESFDLVLCDIRMPVMD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ + + D++ + D A++ GV DY++KPI Y+ L + R Sbjct: 64 GLELVRHIREKGTESDIIMLSGYQDFAYTRAAIQYGVKDYVLKPIPYDELTGVIARVMAN 123 Query: 125 KHMLESIDSASQKQIDEMFNAYAR 148 + + S Q++I M + + Sbjct: 124 QRQKKKQQSEEQQKIGRMIDLASE 147 >UniRef50_C6D3P9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3P9_PAESJ Length = 483 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 10/137 (7%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LIV+DE +A ++ I G+ I A + + A IE +P +++ D +P Sbjct: 2 YRVLIVDDEPWVAYGISKLIDWETEGYQVIGQAYDGSSALRFIEEHRPEVVVSDIRMPGL 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI LL+E+ + +V+ + S+ E +A+R G FDYL+K I E+L +T+ R R Sbjct: 62 NGIELLNEIAKQKLGTEVILASGYSEFEYAQQALRLGAFDYLLKQIEKEQLLETIMRLR- 120 Query: 124 RKHMLESIDSASQKQID 140 QK++D Sbjct: 121 --------GHLEQKKLD 129 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 146 bits (369), Expect = 5e-34, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 6/199 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M +LIV+DE + E++ G+ I AG+ +A ++ F P LILLD L Sbjct: 1 MKPKGIILIVDDEETIRLSVREFL-DAQGYEAIA-AGSCEEALEKMDTFMPDLILLDLRL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ L+ ++ + +V T +++ E +R G +DYL KP +RL + + Sbjct: 59 PNINGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEK 118 Query: 121 FRQRKHMLESIDSASQKQI---DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 +R+ + + + +KQ +E P+ + + + G Sbjct: 119 ALRRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGES 178 Query: 178 HTAETVAQALTISRTTARR 196 T + + + R +AR+ Sbjct: 179 GTGKELVARA-VHRLSARK 196 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 6/184 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ +LIV+D++ L + + +I A N +A I LILLD LP Sbjct: 5 PMNILIVDDDSELLDHLRRALERK--HYRIETAENGEKALDKIFEITYDLILLDIMLPLM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+++L + QA V+ TA D+E + + G DYL KP + L + + Sbjct: 63 DGLSVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLR 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 R ++I +A N +R D P + + + L G + + Sbjct: 123 RDGKRDTILTAGP----LSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNM 178 Query: 184 AQAL 187 A+ + Sbjct: 179 AEHV 182 >UniRef50_A5EWK6 Response regulator, NtrX n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWK6_DICNV Length = 452 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIV+DET + E + + G+ Q AG+ AQAR + + P LILLD ++PD G Sbjct: 8 TILIVDDETMICETLVDILTD-EGY-QTYTAGSAAQARTAKQMYHPDLILLDIWMPDSDG 65 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I LL E V+ + +ET EA + G +D+L KP++ +L T+ R Q + Sbjct: 66 ITLLREWTSQQLNASVIMMSGHGTIETAVEATKLGAYDFLEKPLSTAKLLITIKRALQTQ 125 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK 172 ++ + Q+D R + +E+ L V L Sbjct: 126 ALIAQNAALK-AQLDPNIEIIGRSQAMNEVRELASNLAKQNVPVLIS 171 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + E + Q+ LA N A +IE+ P L++ D +P+ G Sbjct: 4 KILVVDDEQNMRIALYEALSRSG--HQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L ++ VV T + +ET EA++ G DY++KP E + +T+ + +++ Sbjct: 62 IEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQR 121 Query: 126 H 126 Sbjct: 122 Q 122 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 4/135 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+A +L+V+DE + + + A +A ++ +++LD + Sbjct: 1 MSA--RILVVDDEEIVIRSCVRILN--DDLYTVDSAPGGFEALKKVDETAYDILILDVMM 56 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ +L + + H DV+ T S+++T +A++ G FDYL KP + L + R Sbjct: 57 PKMDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNR 116 Query: 121 FRQRKHMLESIDSAS 135 +R+ +++ Sbjct: 117 ALERRQLMQENRKLK 131 >UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V332_9AQUI Length = 274 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T L +L VED + + ++ F I+ A N + + E+ KP LI+ D +P Sbjct: 8 TKNLKVLYVEDSPEVRQSTLLLLKEF--FDNIITASNGKEGLELYEKGKPDLIITDINMP 65 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + GI ++ EL + ++ T+A S++E + E+++ GV Y++KP+ + T+++ Sbjct: 66 EMSGIEMIKELRKKDKDIPIIITSAHSELEFLLESIKLGVDGYILKPVDLNQFINTISKV 125 Query: 122 RQRKHMLESIDSA------SQKQIDEMF 143 ++ + E D Q +DE+F Sbjct: 126 VEKVVLKEEFDKTLNLLKQYQMAMDELF 153 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L L+V+DE + ++ + GF +LLA N +A M + +P LIL D +P Sbjct: 3 LKALLVDDEIHILTNLSKVLPWEEMGFEVVLLAKNGKEALEMASQHRPDLILSDIRMPVM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI LL EL + P +++ T + E A+R GV DY+ KPI Y L +T+ + Sbjct: 63 DGIQLLQELREREIPCEILLLTGYQEFEYARTAIRYGVKDYICKPINYFELEETVRGIAK 122 Query: 124 RKHMLESIDSASQKQ 138 + + Q+ Sbjct: 123 QIREKRKNLNKEQRM 137 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 9/194 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE+ + AE +R +++ A + +A +I+ +++ D +PD G Sbjct: 3 KILIVDDESIVRNFLAETLRRKN--IEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTG 60 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I++L + + VV TA +E EA++ G F+YLIKP + + + + + ++ Sbjct: 61 IDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHL 120 Query: 126 HMLESIDSASQK----QIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 +++ Q+ F ++ + + + G T + Sbjct: 121 SLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFI--NGESGTGK 178 Query: 182 TVAQALTISRTTAR 195 V I +AR Sbjct: 179 EVIAQA-IHANSAR 191 >UniRef50_C9RCQ8 Two component transcriptional regulator, LytTR family n=1 Tax=Ammonifex degensii KC4 RepID=C9RCQ8_AMMDK Length = 265 Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 13/187 (6%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P T ++V+DE + + P I A N +A ++ +P ++ LD + Sbjct: 1 MPFTAIVVDDEPLARDELKYLLSFHPECQIIGEADNAEEALKLVVELRPDVVFLDIRMRG 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G ++ +P VVF TA D A G DY++KP ERL QT+ R Sbjct: 61 TSGFEAAKRMLSLPHPPLVVFATAYDD--YAVGAFELGAVDYILKPFEPERLAQTVRRLS 118 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPK-----DELPTGIDPLTLNAVRKLFKEPGVQ 177 K + A ++ + G PK E I + + G Sbjct: 119 SFKSQSARWEEA----LERLSQLLEEGPPKLKKLPVEKEGEIRLIPYQDIIFAQAHEGEA 174 Query: 178 --HTAET 182 HTA Sbjct: 175 LVHTANE 181 >UniRef50_C6CTL6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTL6_PAESJ Length = 533 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 86/181 (47%), Gaps = 4/181 (2%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +L +DE + + + GF + A + + + M++ +P +++ D +P Sbjct: 4 IRILFADDEPVIIRGLRRLLPWNEMGFEIVGEAYDGNELKRMLDVCRPDVVISDINMPGL 63 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+++ E+ + VVF +A + +AV+ G DYL+KP+ ERL + + + Sbjct: 64 TGIDIIREINETGRQIKVVFISAYQEFSYAQDAVKYGAIDYLLKPVDKERLHEVMRKVT- 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + E + +K++ F R +E+ G+ +A+ + K+ GV H + + Sbjct: 123 -RLIGEQSERNREKEMVVRFERQKRNNTIEEMLAGLTDEDSSAMPE-LKKFGVIHGSRFI 180 Query: 184 A 184 + Sbjct: 181 S 181 >UniRef50_C1F424 Response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F424_ACIC5 Length = 370 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 21/229 (9%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP-GLILLDNYLPDGR 64 +L+V+DE + + A + LA N +A +E+ P ++L D + Sbjct: 5 RILVVDDEPYIRAVIATMLEKSNYLPV--LAANGQEALEHLEQDAPYDVVLSDIMMNGMD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI LL +L + H ++ TA D+ A+R G +DYL+KP A E+L T+ R Sbjct: 63 GIGLLEKLREVHPDTPMIMVTAMHDVSIAISAMRKGAYDYLLKPFAKEQLLATVGRALDY 122 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID-PLTLNAVRKLFKEPGVQ------ 177 + +++ Q ++E+ +A + +TL A+ + Sbjct: 123 RRLVQQNSMYRQ-NLEELVSARTEMLRQAMNDLERSYDITLEALGDALDLKDAETEGHSK 181 Query: 178 -HTAETV--AQALTIS----RTTARRYLEYCASRHL-IIAEIVHGKVGR 218 TA T+ A+ + +S RT AR + I + + K GR Sbjct: 182 RVTAYTIALARHMGVSAQQMRTVARG--AFLHDIGKMAIPDAILLKPGR 228 >UniRef50_C6JJS1 Sensory transduction protein kinase n=2 Tax=Fusobacterium RepID=C6JJS1_FUSVA Length = 213 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 12/219 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI++D + +E+ ++ A ++ +A ++ + +I++D ++P G Sbjct: 4 KILIIDDSKDIIFAISEFFLMKD--WEVYTALSVEEALKIVSTKELNIIIIDYHMPYING 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + + + Q + ++ T E G D+ IKPI L + +K Sbjct: 62 VLGVKLIRQMNENVPIIALTIEGVENIAEEFFLAGADDFAIKPIKVLDLYSRVNVHLNKK 121 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + S + E + GI T++ + K+ T E +++ Sbjct: 122 KVKNLSFETS----------TTKKEKYGDYKKGISVNTISLIENKMKQIDSYITIEEISE 171 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A ++ T +Y+ Y ++ +I++GK+GRP+ Y+ Sbjct: 172 ATGLASQTVNKYMNYLVEMKMVDLKIIYGKIGRPRNEYY 210 >UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1B9_9BACL Length = 528 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 L +LIV+DE + + I GF A N +A ++E P +I D Y+P Sbjct: 2 EKLKVLIVDDEHLIRNLIRLRIDWEQEGFEITGEASNAQEALELVEEQNPDIIFTDIYMP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + GI L +++ + +V + + E + ++ G+FD+L+KPI L Sbjct: 62 NMDGIELSRRVLERYPHIKIVVVSGHDEFEYAQQGIKIGIFDFLLKPIRASDLLHVAGNL 121 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEP 151 +Q+ H + K+I +M R P Sbjct: 122 KQKIH----EERTRAKEISKMKEELERNLP 147 >UniRef50_UPI00017896CE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017896CE Length = 261 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 6/187 (3%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L L+V+DE P+ ++ + G + LA + +A + +++ P LIL D +P Sbjct: 2 LKALLVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEVADQYNPDLILCDIRMPVM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + ++ + ++ T + E EA++ GV DY+ KPI Y L + + Sbjct: 62 DGLTFITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIREIGE 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + + E + P + L + G E + Sbjct: 122 EIRKKRAKEKYYNTV--SLIDEAPNPEAVKKTPEQLVSSALEYINTHM---GQDLGIEEL 176 Query: 184 AQALTIS 190 ++ L IS Sbjct: 177 SEHLGIS 183 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 6 TLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +LI +DE + + + + + A N +A IE+F+P IL+D +P Sbjct: 3 KVLIADDEPKIRQGLKSVLEEMKLPITVCAEARNGMEALEKIEQFQPDFILMDICMPKLS 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL----TR 120 GI L EL + V+ + ++ +A++ GV +YL+KPIA E L + Sbjct: 63 GIQFLEELRKLDKNCPVIVISGFNEFSYAKQAIKLGVSEYLLKPIAEEELQAAVVKVTEE 122 Query: 121 FRQRKHMLESIDSASQKQI-------DEMFNAYARGE 150 +Q++ + ++ Q+ I D FN + G+ Sbjct: 123 IKQKRKSEKFMELVKQQMIQNQDYLRDVFFNEWMEGK 159 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 2/142 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LIV+D+ + + IR A +A +I++F P +++ D +P+ Sbjct: 2 YKILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELIKKFTPDIVITDIRMPNM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI L+ + ++ TA + E A++ G FD+L+KP E + + + Sbjct: 62 DGIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKPTKVEDIINVVQKAIA 121 Query: 124 RKHMLESIDSASQKQIDEMFNA 145 + +++ +K I+ + Sbjct: 122 EINKEKTMIEELEK-INRLLQE 142 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT L +L+V+DE + E E+ R + A A M+ L+ LD + Sbjct: 1 MTGRLKVLVVDDEKIVRESLVEWFRKSG--YEADSADGGRSALEMVAGKDYDLVFLDIKM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G +L + VV TA +ET +A++ G DYL+KP + L L R Sbjct: 59 PDVSGFEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLER 118 Query: 121 FRQRKHMLESIDSASQ 136 Q+K +++ + Sbjct: 119 LLQQKKIVDENAMLRE 134 >UniRef50_C4TWB2 Transcriptional regulatory protein dcuR n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TWB2_YERKR Length = 162 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 11 EDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPDGRGINL 68 +D+ +AE++ Y+ + GF+ +L QAR + L+LLD ++ G++L Sbjct: 2 DDDAMVAELNKCYLNQVAGFNCCGSVSSLQQARDHLMAAEHPIDLVLLDVFMRQDNGLDL 61 Query: 69 LHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 L L + DV+ ++A+D+ T+ +A++ GV DYLIKP + R + L+ +R+++ +L Sbjct: 62 LPVLREFSEHTDVIVISSATDVNTIKKALQYGVVDYLIKPFQFSRFEEALSTYREKQSLL 121 Query: 129 ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLT 163 + +Q+ +D + R I T Sbjct: 122 GQREYCAQEDVDSLLR---RSNVTPAERKKIAQRT 153 >UniRef50_A1ZD68 LytTr DNA-binding response regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZD68_9SPHI Length = 254 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LIV+DE + A +++ F + N +A ++ P L+ LD +P+ Sbjct: 4 IKTLIVDDEALARDKLAIFLQEEEDFEIVGQCSNGIEALQLLRDSYPDLLFLDVQMPEMD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL + P ++ TA +A DYL+KP ER T+ R +++ Sbjct: 64 GMELLRNIDVQKIPC-IILVTAYD--NYALQAFEYHALDYLLKPFDRERFLMTIKRVKEQ 120 Query: 125 KHMLESIDSASQ 136 + + +Q Sbjct: 121 MLLHSQGNHQTQ 132 >UniRef50_C6CWQ4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWQ4_PAESJ Length = 538 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 82/206 (39%), Gaps = 17/206 (8%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE A I+ + +++ A + A ++ +P ++L D +P Sbjct: 1 MNILIVDDEPRHLRGMAGMIQMMRPDAKVKTAKDGEAALALVREEQPDVVLSDIQMPKLD 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L L + VV +A + E A+R G +DYL+KP+ +++ L R Q+ Sbjct: 61 GLSFLQRLQEEELRTKVVMVSAYNLFEYAQRAIRHGAYDYLLKPVDMDKVEVLLQRLDQQ 120 Query: 125 -----------KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTL-----NAVR 168 + + ++ AS + + + GE ++ L + Sbjct: 121 LAEEERERGESAEIKQKLELASSAYRSRLLHQWLSGELPPGERVDLEEWPLLIQMNTLIL 180 Query: 169 KLFKEPGVQHTAETVAQALTISRTTA 194 + G + + L R +A Sbjct: 181 TEIRNKGEAFPVTELVEQLK-QRVSA 205 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 10/176 (5%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + LLI++DE + E GF+ A N + +I P L+LLD LP Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEYGFTVCGEAKNGEEGVSLIRSLNPDLVLLDIRLPKL 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-- 121 G+ +L + + + G ++ + +D + A+R GV YL+KPI E L + + Sbjct: 61 DGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDEEELLHAVKQAKE 120 Query: 122 ------RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF 171 R+ L+S + ++ + ++ N A + ++ L +D LT +A + L Sbjct: 121 TLEKEKRESDQALKSPEQVRRELLLDILNGGAEHKREELLACSMD-LTADAYQVLL 175 >UniRef50_A8RPD4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD4_9CLOT Length = 532 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LI +DE + + I R AG+ A M+ + KP +++ D +P Sbjct: 1 MKVLIADDEINIILLIKSLIDRQKTDVEIAGEAGDGITALEMVRQLKPDVVITDIRMPGM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++L+ + + P + V + S+ E A++ GV DYL+KPI + L L + Sbjct: 61 NGMDLIRHVREEQIPVEFVIISGYSEFEYARSAIQYGVSDYLLKPIKKDELNDVLAKLES 120 Query: 124 RKHMLESIDSASQKQIDEM 142 ++ D + Sbjct: 121 QRASRREQQMQFNLMEDRL 139 >UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyoglomus RepID=B5YAV6_DICT6 Length = 496 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 13/169 (7%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LI +DE + + + + + GF + A + +A + + P L ++D +P Sbjct: 3 YKVLIADDEPVIRQGLKKIVNWNALGFKIVGEAEDGVEALDKVRKLDPDLCVIDIRMPGM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ E+ ++ ++ T + E +A+ GV Y++KP+ + L LT+ + Sbjct: 63 DGLELISEIRKSKSEIKIIILTGYPEFEYAQKAISLGVQSYMLKPVDPQILKDELTKIYE 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK 172 + + S+++I E G LT V KL Sbjct: 123 DLERKKFLFEGSKEKILEKL------------LKGQISLTEKDVSKLLN 159 >UniRef50_A4XID8 Response regulator receiver protein n=4 Tax=Clostridia RepID=A4XID8_CALS8 Length = 1066 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 74/144 (51%), Gaps = 8/144 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+D + ++ ++ + G + A + +A M++ ++P ++ LD LPD Sbjct: 1 MKILIVDDAVFIRKVLRGILQEL-GEEVVGEASSGNEALRMVKEYRPDVVTLDITLPDMS 59 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL ++ + VV TA S+ E V EA++ G +Y+ KP + E++ + L + + Sbjct: 60 GLELLKKIKEVSSSTQVVMITAISNHEVVKEAMKVGATNYITKPFSREKVEEVLKKVEKN 119 Query: 125 KHMLESI-------DSASQKQIDE 141 + I +S QK++ + Sbjct: 120 IQAMSQIERNMTNEESIGQKELSQ 143 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 5/191 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + + + + Q+ A N Q + + +FKP +++ D +P+ G Sbjct: 5 RVLVVDDEESVRQFLYDVLTEEK--YQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 LL ++ A V+ TA E +A++ G FDY++KP + + R + Sbjct: 63 FGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQS 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + A + N + I + + L + G T + + Sbjct: 123 DTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQ--GESGTGKELVA 180 Query: 186 ALTISRTTARR 196 I ++RR Sbjct: 181 RA-IHYNSSRR 190 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 8/192 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++V+DE ++E+ + + S I A ++AR I+ L LLD LPDG Sbjct: 1 MRAIVVDDEKNISELLSILLSEYGIESDI--ASTYSEARSFIQEKYYDLALLDLRLPDGS 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI++L ++ + + +VV TA + ET EA++ G +DY+ KP L + +++ Sbjct: 59 GIDILKQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEK 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + I +++++ + + + I P +N + G T + VA Sbjct: 119 IDLERRICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLI-----VGESGTGKEVA 173 Query: 185 QALTISRTTARR 196 + I R ++R+ Sbjct: 174 AKM-IHRLSSRK 184 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 142 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 9/195 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + EM + + GF +I LA N A ++E P +LLD LPD G Sbjct: 3 KVLIVDDEEGVCEMLKDVLED-EGF-EITLAYNAKDALKIMETEFPDTVLLDIRLPDADG 60 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I ++ +L Q V+ TA E +A++ G DYL KP+ + L + + + + Sbjct: 61 IEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQ 120 Query: 126 HMLESIDSASQ---KQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 ++ + + ++ D + + + ++ I + + + L + G T + Sbjct: 121 RLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQ--GESGTGKE 178 Query: 183 VAQAL--TISRTTAR 195 V + SR ++R Sbjct: 179 VVARTIHSNSRRSSR 193 >UniRef50_Q31J89 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Gammaproteobacteria RepID=Q31J89_THICR Length = 452 Score = 142 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 4/143 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P LLIV+DE + + E ++++A N QA+ + P LI LD ++PD Sbjct: 2 KPGKLLIVDDEKDIRSLMQEIFSEEG--YEVMVAANGQQAQAIWRDKAPDLIFLDIWMPD 59 Query: 63 GRGINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 GI+LL E++ + V+ + +ET EA + G +D+L KP++ +L T R Sbjct: 60 IDGISLLKEMIAENVLDHSSVIMMSGHGTIETAIEATKLGAYDFLEKPLSLAKLLITAER 119 Query: 121 FRQRKHMLESIDSASQKQIDEMF 143 + H+ QK D++ Sbjct: 120 AMEHLHLHSENRHLKQKLPDQIL 142 >UniRef50_C3QXI3 Sensor protein n=4 Tax=Bacteroides RepID=C3QXI3_9BACE Length = 1348 Score = 142 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 16/207 (7%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +LIVED+ + A + I+ + N +A I + P L++ D +P Sbjct: 1089 KTKYRVLIVEDDEEIRNYIA---KEFGDKFHIMESRNGKEALEQIFKKTPDLVISDIMMP 1145 Query: 62 DGRGINLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 + G+ L ++ Q V+ TA + E E + G Y++KP E L +T+ Sbjct: 1146 EMDGLTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVE 1205 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP--GVQ 177 + L + + Q+ ++ P D + + K+ E Sbjct: 1206 NLINTRQQLRKVFT-GQQNLENKVQKLEVKSP--------DEKLMERIMKVINENISNPN 1256 Query: 178 HTAETVAQALTISRTTARRYLEYCASR 204 T ET+ + ISR R L+ ++ Sbjct: 1257 LTIETITTEVGISRVHLHRKLKELTNQ 1283 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 142 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + + + G+ +I +A + +A + R P L+LLD ++P G Sbjct: 4 KILVVDDEISILQSLRGVL-QDEGY-RIGVAASGEEALEELRRDTPDLMLLDIWMPGMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L E+ ++H V+ + ++ET +A R G FD++ KP++ ER+ ++ Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFH 121 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + E QK + R E + L I L G T + +A Sbjct: 122 RLEEENLLWRQKA-HRTSHMTGRSEAVESLREQIRRAAPTNATVLI--TGENGTGKELAA 178 Query: 186 AL--TISRTTAR 195 + +S+ + R Sbjct: 179 RMIHQLSKRSHR 190 >UniRef50_C6J6V9 Response regulator n=2 Tax=Bacillales RepID=C6J6V9_9BACL Length = 517 Score = 142 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE + I G I AG+ A+A +I +P ++LLD +P Sbjct: 1 MKILIVDDEPLVRIGIKSAIDWQAEGVEIIGEAGDGAEALRLIASEQPDVVLLDIKMPKM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP-IAYERLGQTLTRFR 122 G+ +L + + P VV ++ D V EA++ G DY KP I L L R Sbjct: 61 DGLEVLRRIKEQELPVKVVVLSSFDDFGFVKEAMKLGALDYFHKPDINDRELIGMLQNIR 120 Query: 123 QR 124 ++ Sbjct: 121 EQ 122 >UniRef50_C6JAS9 Predicted protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JAS9_9FIRM Length = 515 Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 2/137 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP--GFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L+VEDE + I+ G +I A N + E++KP L+L D +P Sbjct: 1 MKVLVVEDEFYARKAMIRQIKKYDQDGLFEISEASNGEEGWEFCEKYKPELVLTDIRMPK 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI LL E+ V+ +A SD E A+ G DYL+KPI L + L +F Sbjct: 61 MDGIQLLQEIRNNELEIKVIILSAYSDFEYARSAIVNGASDYLLKPIDDTALTECLNKFV 120 Query: 123 QRKHMLESIDSASQKQI 139 + + S+K + Sbjct: 121 TQHKIERKEALLSRKDM 137 >UniRef50_C6C248 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C248_DESAD Length = 368 Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 19/240 (7%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + LT+L+++DE + E ++Y+ GF+ I AG+ + + R P +L+D +P Sbjct: 4 SELTILVIDDEDFVRETISDYLTD-SGFNIID-AGDGEEGLEIFRRENPDAVLVDLNMPK 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI-AYERLGQTL--- 118 G +L ++ ++ + A ++ +AVR G +D++ KPI L L Sbjct: 62 VDGFEVLTQVSAESPDTPIIVVSGAGLIQDAIKAVRLGAWDFVTKPIVDLNILEHALGQG 121 Query: 119 ----TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF--- 171 T ++ + E +++ +K+ +++ N + I + +++ Sbjct: 122 LERATLIKENRRYKEHLEAEVEKRTEDLRNEIKVRREAQDALMAIQDEVIETQKEVILTL 181 Query: 172 ---KEPGVQHTAETVAQALTISRTTARRY-LEYCASRHLIIAEIVH--GKVGRPQRIYHS 225 E TA V + +S ARRY L + L +A +H GK+G P + + Sbjct: 182 GEVVENRSNETANHVRRVAELSYILARRYGLSKEEADLLRLASPMHDVGKIGIPDTVLNK 241 >UniRef50_C6L8Z1 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L8Z1_9FIRM Length = 539 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIP--GFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 L LL+VEDE E IR G QIL A N + + + +P L++ D + Sbjct: 10 TDLKLLVVEDELYAREALVRKIRQYDTAGDFQILEASNGKEGFGLYRQEQPELVITDIRM 69 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ LL + Q VV +A S+ +A++ GV DYL+KP++ E L L + Sbjct: 70 PGMDGLELLENIRQLGQKTQVVILSAYSEFAYAQKAIQYGVSDYLLKPVSDEALENCLDK 129 Query: 121 FRQRKHMLESIDSASQKQ-IDEMFNAYARGE 150 F QR + K + + A R E Sbjct: 130 FMQRHKKERGEALITGKDMVTRLLAAGIREE 160 >UniRef50_A7VQN5 Putative uncharacterized protein n=2 Tax=Clostridium leptum DSM 753 RepID=A7VQN5_9CLOT Length = 514 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +++VEDE + E + + I + + A N +I+ KP L++ D +P Sbjct: 1 MRIVVVEDEMCIREGLVKLLERIDRAYLVVGQADNGKSGLELIKESKPDLVITDVQMPIM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ +L L + V+ +A S+ +A++ GV +YLIKPI L Q+L Q Sbjct: 61 DGLEMLRCLQEKQPLPKVIILSAYSEFSYAQQAIKLGVSEYLIKPIIINELTQSLRSIEQ 120 Query: 124 R--KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + + ++ + ++E+F+ +G P T ++++ V + Sbjct: 121 QLAEESNKKGEAPELRSLEEVFSGI---------QSGRLPFTEKIRNYVYQKFSVDLNGD 171 Query: 182 TV 183 V Sbjct: 172 FV 173 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT TLLIV+DE L ++ + G ++ +A + +A ++ER L+L+D + Sbjct: 1 MTKE-TLLIVDDEEDLLQLLKRSLEPDLG-CEVKVASSGGEALNVLEREPVDLLLVDMKM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ LL ++ + VV TA +E +A+R G +D++ KP +E L +L + Sbjct: 59 PEMNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNK 118 Query: 121 FRQR-KHMLESIDSASQKQIDEMFNAY 146 +R + + E+++ Q+ E F Sbjct: 119 ALERSRLLRENLNLQRHVQMHEAFQNL 145 >UniRef50_Q9KBL6 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9KBL6_BACHD Length = 506 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 7 LLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++IV+DE + E I GF I A N + + P L+++D +P+ G Sbjct: 4 VMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPEVDG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT----RF 121 ++L+ + + + SD +A+ C DYL+KP+ + L +L R Sbjct: 64 LSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSLKKVYGRI 123 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTG 158 + + E ++ +KQ++ + G P E+P G Sbjct: 124 TRHHQVHELVERVQEKQVEMVLTELLEGTPLSEIPIG 160 >UniRef50_B8I505 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I505_CLOCE Length = 534 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT PL ++IV+DE+ ++ I G A + +A M++ P +++ D Sbjct: 1 MTDNPLKVMIVDDESNTRDLLKLLIDWDGLGMEAAGDATSGLEALDMLDELNPDIVITDI 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P G+ L + + H ++ TA + AV G D+++KP+ + + +TL Sbjct: 61 QMPYMDGLTLSKNIKERHPDISIIILTAHDEFAYAQNAVSLGASDFILKPVNKDTIFETL 120 Query: 119 TRF-------RQRKHMLESIDSASQKQI 139 ++ R+R LE Q I Sbjct: 121 SKVGNSIRSTRERLGRLELSHQYMQSNI 148 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 2/135 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + P+ +L+V+DE + + + + I AGN +A + I + +I+LD LP Sbjct: 8 SCPINILVVDDEKSIRRLLEKELASAR--RCITTAGNGREALIAIRKNVFDVIVLDISLP 65 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 D GI L+ + ++ T D++ EA++ G DY+ KP RL Q + + Sbjct: 66 DANGIELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKA 125 Query: 122 RQRKHMLESIDSASQ 136 Q + + Q Sbjct: 126 YQIGSLHKKKFLKQQ 140 >UniRef50_UPI000178A004 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A004 Length = 514 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 5/175 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 PL +LIVEDE PL + + G I A N ++A + P +++ D +P Sbjct: 4 KPLGVLIVEDEIPLRQELRLFPWEACGAEWIGEASNGSEAMQLCAERTPDVVITDITMPV 63 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIK-PIAYERLGQTLTRF 121 GI L+ EL + H ++ T SD V EA+R G +Y++K + E L Q + + Sbjct: 64 MDGIALIRELRKRHPHVQIILLTCHSDFHYVQEALRLGALEYILKVSLEEEELKQAMDKV 123 Query: 122 RQ---RKHMLESIDSASQKQID-EMFNAYARGEPKDELPTGIDPLTLNAVRKLFK 172 R ++ M+ Q+Q+ +F G+ L+++ +L + Sbjct: 124 RAAVVKERMVLEHARREQRQLQAALFGKLLHGQEPAGSDWQSMTLSVDRPIRLVR 178 >UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZP2_9BACL Length = 520 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE L E +I G+ + +A N +A +++ P L++ D +P Sbjct: 2 IKVLIVDDEPKLREGLRTFIDWGAYGYEVVDMAANGNEALEKYQQYHPDLVVADIRMPGM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR- 122 G+ L+ +L ++ + +D +A+ YL+KP+ + L L + + Sbjct: 62 DGLQLIEKLRAQDPNLHILILSGYADFSYAKKAMTHRADGYLLKPVDEDELKDYLWKIKL 121 Query: 123 ---QRKHMLESIDSASQKQIDEMFNAYARGEPKDEL 155 + K + ++ + + + GE +++ Sbjct: 122 TIDEEKASEQWKHVTTEWNREALIQSVLTGEDEEDP 157 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 10/203 (4%) Query: 1 MT--APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT +T+LI +D + + E + + P + A +A M R++P +I++D Sbjct: 1 MTDIEKITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDI 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P GI + Q ++ T D E + E +R GV Y++K I+ E L Q + Sbjct: 61 NMPGLNGIEATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAV 120 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + ++ +QK I + +P P I PLT R++ + Sbjct: 121 YQVARGARVIHPG--VAQKVI----GCIQKQKPFTPAPVSI-PLTARE-REILIHVSLGK 172 Query: 179 TAETVAQALTISRTTARRYLEYC 201 + +A+ L IS T + +L + Sbjct: 173 SNREIARELFISEKTVKNHLTHI 195 >UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=A0L4H3_MAGSM Length = 470 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 5/192 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LL+VED +A ++ EYI+ P Q+ A + + + P L+LLD LPD G Sbjct: 9 SLLLVEDSPSMAMVYQEYIKGEPQ-WQVSHCKEGHAALVYLHQHTPDLVLLDLQLPDMHG 67 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L + + P VV TA ++T EA R G FDYL KP + RL T+ ++K Sbjct: 68 LEILKAIHEQQLPTQVVIITAHGSVDTAVEATRLGAFDYLEKPFSANRLLVTMGNALRQK 127 Query: 126 HMLESIDSASQK-QIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ++ + + D L I+ ++ G T + V Sbjct: 128 NLSLEVQAYRDSFDRDHYHGFIGASPTMQALYQTIESAAPSSATIFI--TGESGTGKEVC 185 Query: 185 QALTISRTTARR 196 I + + RR Sbjct: 186 AEA-IHKASTRR 196 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 6/190 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + + Q+L A N A A +I P L+LLD ++P GI Sbjct: 5 ILVVDDEESIRISLGGILEDEG--YQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGI 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L ++ VV + +ET +A R G FD++ KP + +++ T+ K Sbjct: 63 QTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKE 122 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 + + ++ + E + EL G A + E VA+A Sbjct: 123 LRKENEALRLSALKE--HEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARA 180 Query: 187 LTISRTTARR 196 I + RR Sbjct: 181 --IHHYSTRR 188 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 31/248 (12%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 P +L+ +DE + + I GF+ + A N A+A + E+ KP ++L D +P Sbjct: 2 EPYRVLLADDEEEIRAGISRKIDWTGLGFALVGEAENGAEALELSEQLKPDVVLTDIKMP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ L L Q+ +V + D E +AV GV +Y++KPI +G+ LTR Sbjct: 62 FMDGLELCRRLRQSLPAAKLVVFSGFDDFEYARQAVGMGVSEYIMKPINAPEMGEVLTRL 121 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGI---------DPLTLNAVRKLFK 172 R++ ++ ++ + Y P D + A R Sbjct: 122 REQL----DKQRMERRDMETLRRRYEESLPVLRELFYTRLLDGRIRPDQVADRAARYELD 177 Query: 173 EPGVQHTAETV----AQALTISR-----TTARRYL-EYCASRHLIIAEIVHGKVG----- 217 P +A V A+ R + R +L E+ + ++ +++ Sbjct: 178 MPEGTWSAALVRVGGAEESAEQRDELLLLSVRAFLDEHFSLPGAVVCSLLYNDAVALLVH 237 Query: 218 --RPQRIY 223 RP+++Y Sbjct: 238 LERPEQVY 245 >UniRef50_C0CWH6 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWH6_9CLOT Length = 246 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M PL L+IV+DE+ + + A G+ + N +A +E ++L D Sbjct: 1 MPQPLRLIIVDDESFMRDNLAHLFPWEELGYEVASVFANGREALAYLEHNPADVVLTDIQ 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P G+ L + + + P +VF +A SD E + + G DYL+KP+ Y+ L T Sbjct: 61 MPVMDGLELARCIREQNIPARLVFLSAYSDFEYARKGILYGADDYLVKPVRYQELVDLFT 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 R + D + A P E + L A+ +E + + Sbjct: 121 RLK-----------------DSIEAAARETSPATESK---EEPALAALSACIREHPGEIS 160 Query: 180 AETVAQALTI 189 + ++A + Sbjct: 161 LDFASRATGL 170 >UniRef50_A7VQW7 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQW7_9CLOT Length = 508 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%) Query: 6 TLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++L+V+DE + + + GF + + +A ++E L++LD +P Sbjct: 3 SVLLVDDEYFIRVRVRKCVDWQALGFDMVADCESGREALELLEAHPFDLVVLDISMPIMD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++L E+ Y +V T E A+ GV DY++KPI E + Q + + +R Sbjct: 63 GLSLCREIRARGYDSQLVILTGYDKFEYAKSALSFGVLDYILKPIDEEEMEQVVKKACER 122 Query: 125 KHMLESIDSASQKQI 139 ES++ + + Sbjct: 123 IDRKESLEHQRAEHL 137 >UniRef50_B6R920 Response regulator receiver protein n=2 Tax=Proteobacteria RepID=B6R920_9RHOB Length = 236 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 25/231 (10%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++ LIV+DE E + + N A I + KP L+ LD +P Sbjct: 2 ISCLIVDDEPYAREELKDLLSKADDIEVTGECSNAIDALGFINKHKPQLVFLDIQMPRIS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ- 123 G+ ++ L P +VF+TA E +A FDYL+KPI ERL +TL+R R Sbjct: 62 GMEMIGMLDPETMP-RIVFSTAYD--EYAIKAFEHHAFDYLLKPIEEERLAKTLSRVRSD 118 Query: 124 -RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH--TA 180 R ++E I + + + P ++AV +F + H TA Sbjct: 119 LRPQLMEEIIPQELQHLPCYLGNKLKVVP------------VHAVEYVFSDLSGIHVATA 166 Query: 181 ET-VAQALTISRTTARRYLEYCASRHLII----AEIVHGKVGRPQRIYHSG 226 E V LT+ R L C ++L+ +EIV + G + + HSG Sbjct: 167 ECYVHTHLTLKVLEQRTSLARCHRQYLVSPDAISEIVLQETG-AEVVTHSG 216 >UniRef50_Q1AST2 Two component transcriptional regulator, LuxR family n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AST2_RUBXD Length = 232 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 7/201 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ L++V+D + + P F + A + +A + R +P ++++D +P Sbjct: 10 PVRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGV 69 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + + H V+ TA D E + EA++ G Y++K R+ L R Sbjct: 70 DGLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISALRRLLS 129 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +Q+ + AR P + LT R++ T + Sbjct: 130 ------GESPLNQELAARLIQDLARRPGGGGNPPPAEELTARE-REVLVLMARGRTNPEI 182 Query: 184 AQALTISRTTARRYLEYCASR 204 A+ L ISR TA+ +++ + Sbjct: 183 ARELVISRGTAKSHVQNIIRK 203 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 2/157 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+ +DE L + + + ++ N +A M + + +LD + Sbjct: 11 MTESVRVLVADDELSLRMVLQTALNKVG--YEVDTVKNGKEALCMAQENHYDVAILDIRM 68 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ +E+ + ++ TA ET A++ G +DY++KP + + ++R Sbjct: 69 PEVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSR 128 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPT 157 + + + + + +Q+ + A G+ E Sbjct: 129 AIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSK 165 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +L+V+DE+ + ++ + + PG I G+ +A + + +I+LD LPD Sbjct: 6 SIEILVVDDESNIRKLFSRELAS-PG-RTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDA 63 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ +L++ ++ T +D++ +A++ G +DY+ KP + +R+ Q + + Q Sbjct: 64 NGLELMTKLLETVPNVAIILITGYADVDNAVQAMKNGAYDYITKPFSLDRMEQVIEKAYQ 123 Query: 124 RKHMLESIDSASQ 136 R + + Sbjct: 124 RVRLQRENELLRH 136 >UniRef50_B7JR06 DNA-binding response regulator n=23 Tax=Bacillus cereus group RepID=B7JR06_BACC0 Length = 231 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 1/200 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+DE E I + LA + A+A + E+F L LLD +LP Sbjct: 1 MNVLLVDDEPLELEQLEFLIHRQFPNWTLHLALDAAEALSINEKFSIHLALLDIHLPGIS 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L +L + D++ TA + + +++R GV DY+ KPI + L L +++ Sbjct: 61 GLQLGEKLKNNNANLDIIIVTAYQNFDYAKQSIRLGVIDYITKPIIEKELIDVLQKYKGD 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +++ S Q +D + ++ ++ + R+ +E GV + + Sbjct: 121 SNII-SYSRIIQDTLDIIHETFSDKLHLADIAAKVHTNPTYLSRRFHEEVGVSFSGYIMQ 179 Query: 185 QALTISRTTARRYLEYCASR 204 + +S+ + +C S+ Sbjct: 180 YRIEMSQKYLTEHPHWCISQ 199 >UniRef50_A7B1D9 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1D9_RUMGN Length = 508 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +++VEDE P+ E A+ + I P + + A + +I P L+++D +P Sbjct: 1 MRIVVVEDEAPIREGMAKLLSKINPEYELVGKAADGEAGYQLIRELNPDLVIMDIRMPKM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI ++ +L + + + +A S+ + +A+ YL+KPI L L + + Sbjct: 61 DGIAMMKKLREENIKCKAIILSAYSEFQYAQKAIELKADSYLLKPIKIPELKSALKQAER 120 Query: 124 RKHMLESIDSA 134 + + Sbjct: 121 EISEDQGTEQI 131 >UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NHY9_EUBSP Length = 507 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHI-PGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + + ++EDE P+ E ++ ++ I + + A N + +I + KP L++LD +PD Sbjct: 1 MRIAVIEDEAPIREGMSKILKKINENYELVGKAENGKKGLELIRKEKPDLVILDIRMPDM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ +L + + + +A SD A+ G+ +YL+KPI L + L + Sbjct: 61 DGLTMLSIVREEGIECKAIVLSAYSDFAYAQRAIELGIENYLLKPIKIAELKKALEQAEV 120 Query: 124 RKHMLESIDSA 134 +S + Sbjct: 121 NISKEQSKEQL 131 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%) Query: 1 MTAPL--TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 M + +L+V+DE + E + G ++ +A N A M+E P L++ D Sbjct: 1 MMGAMGRKILVVDDEQNMRVALYEALSR--GGYEVKVAENGRMALEMVESEAPDLVVTDI 58 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P+ GI +L ++ VV T + +ET EA++ G DY++KP E + +T+ Sbjct: 59 RMPEMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETI 118 Query: 119 TRFRQRK 125 + +++ Sbjct: 119 KKVMRQQ 125 >UniRef50_C1PB78 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PB78_BACCO Length = 234 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 1/200 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE E IR ++ A + QA+ M+E L LD LP Sbjct: 1 MNILIVDDEILELEQLVFLIRQRYPEWELFEAEDAVQAKKMLENHPIDLSFLDIRLPGES 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + + +Y + V TA +D + A++ VFDYL+KPI E L + L + + Sbjct: 61 GLELCAYIRE-NYKSECVMITAHADFQYAQHAIKLHVFDYLVKPIITEELYRMLENYVNK 119 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +E + S Q+ I + + +L + + RK KE G+ + Sbjct: 120 YGYIEGLSSDIQEVIRIIREDFHSKINLADLASQVHVSPNYLSRKFSKELGMSFQEYLIK 179 Query: 185 QALTISRTTARRYLEYCASR 204 + +++ + + E+ + Sbjct: 180 YRIEMAKVFLKAHPEWSIQK 199 >UniRef50_A6TNJ5 Two component transcriptional regulator, LuxR family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNJ5_ALKMQ Length = 212 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 13/195 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +T+L+V+D + I G AG L +A + KP ++LLD LP Sbjct: 3 KKSVTILLVDDHAIVRYGIRSLIERNDGLKVCGEAGTLQEAYHKVSDLKPDIVLLDIKLP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 DG G E+ + V+ TA ++ + EAV+ G YL+K I + + + Sbjct: 63 DGDGAAGCREIKKRVPDVKVIILTAYAEDSIILEAVKAGAEGYLLKDIDSKNIITAI--- 119 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 ++++ S + + I ++ N + ++ T D L + + + Sbjct: 120 ---RNVVGGKTSLANEAISKVLNEVKQNCSGEDDLTSQDKSILELI-------SQGKSNK 169 Query: 182 TVAQALTISRTTARR 196 +A+ + +S T R Sbjct: 170 DIAKEIYVSEKTVRN 184 >UniRef50_A9WRA3 Transcriptional regulatory protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WRA3_RENSM Length = 153 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT L +LIV+D+ +A +H Y+ GFS + G+ A + +P L+L+D YL Sbjct: 1 MTDDLRVLIVDDDFHVARLHVAYVEATAGFSALDPVGSGEAALRAVSSLRPDLVLIDIYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G++LL L D + +AASD+++V +A+R G YLIKP E L L Sbjct: 61 PDWNGLDLLRNL-----DVDAMVLSAASDVDSVHKAMRRGALGYLIKPFGAEALSAKLRG 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYA 147 + + + +L + S Q + ++ Y Sbjct: 116 YARYRRLLAAGRSLDQDAVVDVSQRYG 142 >UniRef50_Q26BE1 Response regulator, LytR/AlgR family n=3 Tax=Flavobacteria RepID=Q26BE1_9BACT Length = 251 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LI++DE + + H+ + A +L +IE P LI LD +P Sbjct: 1 MRVLIIDDEKRARHLLHTLLKEHLNEVEVVGEATDLQDGLKLIESTTPDLIFLDIEMPGE 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ ++ + + ++F TA + + EA + DYL+KPI E L + R+ Sbjct: 61 SGLEIIKYIKPDQHQFQIIFVTAYN--QYAVEAFKTNAIDYLLKPIDIEELKTAFAKARK 118 Query: 124 RKHMLESIDSASQ 136 + H + Q Sbjct: 119 QHHSQQVTQQLEQ 131 >UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WA66_CHLAA Length = 218 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 4/199 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +LIV+D+ + A + + AGN +A ++ P ++L+D + Sbjct: 1 MT--IRVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVASLDPDVVLMDVMM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ +L + V+ T D E V +++ G YL+K + + L ++ Sbjct: 59 PVMDGVEATRKLAERGPRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRT 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 ++ + + + + P+ + + R + + +T Sbjct: 119 VAGGGALIHP--QIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTN 176 Query: 181 ETVAQALTISRTTARRYLE 199 + + + L +S T + +L Sbjct: 177 QEIGEQLALSVGTVKNHLS 195 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIVED+ E I ++ I A + KP LIL+D ++P G Sbjct: 4 TVLIVEDQPNFREGLKFMISQSRNWTVIGEAETGEEGWQKALELKPDLILMDIHMPVMNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I L + + T D + A+R G D+L+KP + E + L ++ Sbjct: 64 IELAERIHSHGMDTLFIIITGFQDFQYAQSAIRYGAMDFLLKPCSDEDISGILGSASKKL 123 Query: 126 HMLESIDSASQKQI 139 +++ + Sbjct: 124 QAKRKDQQTTREHL 137 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + E + + G+S + A + +A + +P +LLD +P+ GI Sbjct: 5 VLVVDDEKSVCEALKDVLEE-SGYSVV-TATSGREALEKVNLIRPHAVLLDIRMPEMDGI 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 +L L + H V+ TA SD +T A+R G F+Y++KPI + L TL + Sbjct: 63 KVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKA 117 >UniRef50_C7R6S4 Two component transcriptional regulator, LytTR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6S4_KANKD Length = 234 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 19/203 (9%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIV+DE P + + + A N QA +I +P LI LD +P Sbjct: 2 ISVLIVDDEQPARQRLRRLLDSHSDLEIVGEAENGQQALDLINSLQPDLIFLDISMPVMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ + +L Q ++FTTA E +A DYL+KPI +ERL + L + +++ Sbjct: 62 GMQVAKQLNQNDPQPHIIFTTAYD--EYALQAFDVDAQDYLLKPIRHERLSKALQKLQRQ 119 Query: 125 KHMLESI-------DSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 ++ ++ + ++E+ ++ + + L+ +++ L + Sbjct: 120 LTQTKTAYLSIRERETVRRVAVEEILFLHSDQKYTEVHLAKEVLLSSESLKDLEQRFSHD 179 Query: 178 HTAETVAQALTISRTTA--RRYL 198 + I R+T R++L Sbjct: 180 F--------IRIHRSTLVNRQHL 194 >UniRef50_A5WD77 Two component transcriptional regulator, LuxR family n=3 Tax=Moraxellaceae RepID=A5WD77_PSYWF Length = 219 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 91/211 (43%), Gaps = 11/211 (5%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T+P +L+V+D L A+ + P F + + +A + + + L++LD +P Sbjct: 9 TSPAKILLVDDHPMLRRGMADLLSLEPDFQVVADVSSGEEALSYLAQNQVDLVILDQNMP 68 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G++ ++ + + V+ T + + + A++ GV YL+K + E++ + + Sbjct: 69 GLSGLDTAEQIREQGHQAKVLMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVALDIRKA 128 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + ++ + R D++ + + L V+ + K H+ + Sbjct: 129 LR-------GELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVVKMIAK----GHSNK 177 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + L IS +T + ++++ ++ + + Sbjct: 178 MIGNELGISESTVKVHVKHILNKTNLRTRVD 208 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 5/189 (2%) Query: 1 MTAPL--TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 M+ P+ ++++V+DE + E+ + H GF ++ A + ++A +IE+ +P LI+LD Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASL-HFAGF-EVNTAASGSEAIEVIEKTQPDLIVLDV 63 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LPD G + + Q V++ TA D + + G DY+ KP + E + + Sbjct: 64 MLPDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 123 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 +R D + D N + + P + P +R L G Sbjct: 124 RAILRRTQEQVEDDPII-RVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVL 182 Query: 179 TAETVAQAL 187 + + + Sbjct: 183 SKAQILDHV 191 >UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0L7_PELTS Length = 223 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 90/199 (45%), Gaps = 8/199 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +T+ + LL+V+D+ + + + + + A N +A I R KP +IL+D + Sbjct: 5 LTSEIQLLLVDDDPLVRRSL-RMLFELHDINVVGEASNGEEALKAIARLKPTMILMDVNM 63 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI L + + V+ T + E V +A+R G Y++K E+L + + Sbjct: 64 PKMDGIQALKAIKTNYPDIQVIILTVHNQHEKVVQAIRDGCSAYVLKDSPPEQLIEVVES 123 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + ++ +++ + E+ +G P+ + P + LTL +++ + + Sbjct: 124 VAEGRYFVDTSIAN------ELLVNLVQGTPRRQHPKNLPLLTLRE-KEVLQLIVNGLSN 176 Query: 181 ETVAQALTISRTTARRYLE 199 + +A L I+ T + ++ Sbjct: 177 KEIAGKLNITLRTVKAHVS 195 >UniRef50_B5JSZ7 Response regulator receiver:LytTr DNA-binding region n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSZ7_9GAMM Length = 246 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 3/137 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIV+DE P + + PG+ + AGN A + ++LLD +P Sbjct: 3 ISVLIVDDEPPARQRLVRLVEKTPGYEVVAEAGNGIDAIARFNETQAQIVLLDIRMPVMD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L Q P ++FTTA SD +A DYL+KPI ERL Q L QR Sbjct: 63 GIEAAQHLTQHETPPAIIFTTAYSD--HALQAFESHAIDYLLKPIRQERLDQALEAA-QR 119 Query: 125 KHMLESIDSASQKQIDE 141 ++ + A D Sbjct: 120 SNLAQVKSVAEDSDSDS 136 >UniRef50_UPI0001C351CB two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C351CB Length = 252 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 85/210 (40%), Gaps = 13/210 (6%) Query: 5 LTLLIVEDETPLAEMHA-EYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L +L+++DE + + E A N + ++ P LI+ D +P Sbjct: 2 LKVLVIDDEVFVRKGIVMETDWASLDCMVAGEAANGLEGLEACRKYNPDLIISDIRMPKM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI +L L + V+F TA S+ E A++ FDYL+KP L ++R R Sbjct: 62 DGIEMLKILREEGNDVSVIFLTAYSEFEYARNALKLLAFDYLLKPFEDGELEDAVSRVRD 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + ++ + +++ ++ + AR K + + + + + + T+ Sbjct: 122 K--LVREREEKERREESKILSPGARTGDKSRYIK----EAIAYITEHYNDSD--LSVGTI 173 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVH 213 A++L IS +L + + + + Sbjct: 174 AESLGISE----GHLSHLFKKETDYTVMAY 199 >UniRef50_C0GJ72 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ72_9FIRM Length = 212 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 12/212 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +++V+D + + + + A L A + P +ILLD L Sbjct: 1 MKKNIKVMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGAVAVCAEVAPDVILLDFKL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L + ++ TA +D V+E ++ G YL+K + E L T+ Sbjct: 61 PDGDGIIGCGNLKRQFPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEELINTIQA 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + Q +D K + P LT V ++ V Sbjct: 121 VHK-----------GQSVLDPSVTEILFDNIKSQQPKKEHNLTPKEV-QILDMISVGKAN 168 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ + IS T R Y+ + + Sbjct: 169 KEIAEIMKISDKTVRNYVSNILQKLNVSNRTE 200 >UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinella succinogenes RepID=Q7M9T6_WOLSU Length = 330 Score = 139 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +T PL+LL+VEDE EM A + P S++ +A N +A + + P ++L D + Sbjct: 5 LTFPLSLLLVEDEKMSQEMLARLLE--PRVSRLWIASNGKEALELYQENTPDVVLTDLVM 62 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ L+ + + VV +TA ++ + A+ GVF YL KP++++ L +TL + Sbjct: 63 PEMDGMELIERIKGLNPEATVVISTAFYELGFLMRAIELGVFGYLTKPLSFQGLEETLRK 122 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGI 159 +R +L + + K + AY + E + Sbjct: 123 CHRRVELLRAHEELEVKN-HHLKIAYDQLREAKEQEKEL 160 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 2/137 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + + ++ Q+ A + +A +E+ + +++ D +P G Sbjct: 3 KVLIVDDELNMRVVLQAMLKKKG--YQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSG 60 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + LL + + V+ TA +ET +A++ G FDY+ KP + L + + + + Sbjct: 61 LGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTR 120 Query: 126 HMLESIDSASQKQIDEM 142 ++++ID+ Sbjct: 121 IKNHGEVILAEEEIDKY 137 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 139 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 83/210 (39%), Gaps = 5/210 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ +L+ +D +R P + A + A+A P ++LLD +P Sbjct: 85 DPIKVLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPK 144 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI + + ++ T + + + EA++ G YL+K I+ + + + Sbjct: 145 RTGIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVH 204 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + ++ S + K ++E + RG+ + ++P P ++ + Sbjct: 205 GGQSLISP--SMASKLLNEFASLIKRGDARHQVPA---PKLTEREMEVLRLVAKGLNNRD 259 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ L IS T + ++ + + + + Sbjct: 260 IAKQLFISENTVKNHVRNILEKLQLHSRME 289 >UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 Tax=Synechococcus RepID=Q2JML6_SYNJB Length = 229 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 12/206 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+ ++ + ++ G+ A + + + + +P +++ D +P+ G Sbjct: 3 RVLVVDDDPLSLKVLSRHLTQH-GYRVCTGA-SGVEGLRLFAQEQPDVVVSDVVMPEMDG 60 Query: 66 INLLHELVQA--HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 +L Q +F ++ +++ + G DY+IKP L + + Sbjct: 61 FEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIE 120 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 R +Q +I + ++ +P D PT + A ++F+E T + Sbjct: 121 RSRR-------TQSEILRLIQQQSQPKPEADPRPTPPELPLTPAEERVFREVIRGFTNKQ 173 Query: 183 VAQALTISRTTARRYLEYCASRHLII 208 + + L IS T + +L S+ + Sbjct: 174 IGEKLFISPRTVQTHLTNILSKLSLE 199 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 9/149 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT LL+V+DE L ++ + + Q+ AGN A ++E+ L++ D + Sbjct: 1 MT--HNLLVVDDEPKLCDLLSSALSQNG--IQVFTAGNGLHALKVLEQEDIDLVISDWRM 56 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G LL E+ Q + V+ TA S ++ +++R G +DY+ KP + L T+++ Sbjct: 57 PGMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSK 116 Query: 121 FRQRK-----HMLESIDSASQKQIDEMFN 144 Q + + + A +QID + Sbjct: 117 ALQFRDILKDNQRMRAELAEHQQIDSLVG 145 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 3/140 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +A + +LI+EDE + + G+ A + + + L+D LP Sbjct: 6 SAVIHVLIIEDEDSFRSLLESRLNR-KGYCITATA-SGEEGLKAAREKSFDVALVDIRLP 63 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI +L L Q P +V+ T +ET EA+R G + YL KP+ + L L + Sbjct: 64 GMDGIQVLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKA 123 Query: 122 RQRKHMLESIDSASQKQIDE 141 +++ + + ++ + + +D Sbjct: 124 LEKRRLADRVEGLN-RALDR 142 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 3/182 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI++D+ E+ + G++ A F P +I+LD LPD G Sbjct: 5 KILIIDDDASQLELLNIFFSG-RGYAVHCSA-TAMAGLEARATFHPDVIVLDIRLPDMDG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L L +V+ TA DMET +A++ G ++Y+ KPI + L + R + Sbjct: 63 IEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALKNS 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + E+ + + K + +P E+ I L+ N V L E E +A+ Sbjct: 123 ELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLI-EGETGTGKELIAR 181 Query: 186 AL 187 A+ Sbjct: 182 AI 183 >UniRef50_B5JNB1 LytTr DNA-binding domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNB1_9BACT Length = 253 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 12/198 (6%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M PL +LIV+DE P ++ + + A N +A ++E P L LD + Sbjct: 1 MPPPLKILIVDDEPPARAKLKLFLSDCLPDATLYEAANGTEALELLESAAPDLAFLDIQM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ ++ P ++FTTA + +A DYL+KP R + L + Sbjct: 61 PGMTGLEVVEAFGPEEMP-PLIFTTAYD--QYAVKAFEHNAVDYLLKPFDDRRFRKALDK 117 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + ++DSA + A + I + + + A Sbjct: 118 ATSKLVPSPTLDSA-------LLTQLAASIQQPSYLERIMVRENDRIIPILVSDIHWLEA 170 Query: 181 ETVAQALTISRTTARRYL 198 + + + I +T++RY+ Sbjct: 171 DD--KYVRIHLSTSKRYI 186 >UniRef50_C9ABT0 Predicted protein n=3 Tax=Enterococcus casseliflavus RepID=C9ABT0_ENTCA Length = 469 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 8/194 (4%) Query: 6 TLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +LIV+DE + I G+ + A N MI KP +++ D +P Sbjct: 3 KVLIVDDEASIRNGLPLIIDWERLGYQIVGSAENGEAGLAMIRELKPDVVIADIRMPGKN 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ ++ + + + SD + +A++ G YL+KP+ E L LT+ Q+ Sbjct: 63 GLEMVQAASEEGLLFFAIILSGYSDFDYAKQALQLGAVTYLLKPVDEEELIGILTKIDQK 122 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + SQ ++++F G + + +KL ++ E VA Sbjct: 123 AKTDQQKNQKSQ-LMEKLFGGDQTGIKDAQAIKLLRLSEEADAQKLVEKLQ-----EQVA 176 Query: 185 QALTISRTTARRYL 198 Q +T+ R YL Sbjct: 177 QVVTLIHRHHR-YL 189 >UniRef50_C6CTF9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF9_PAESJ Length = 507 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 9/185 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +L+V+DE + E + G+ + A N A E+ LI++D +P+ Sbjct: 2 YKVLLVDDEPMIREGLRTLLEWESLGYEVVDTAANGKDALQKCEQHDLDLIIVDIRMPEM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ ++ + V+ + +D E +A+ + YL+KP+ + L + L R+ Sbjct: 62 NGLELIKKIRENGGTMHVLILSGYADFEYAKQAIVQRIDGYLLKPVDEDELMEYLHSLRK 121 Query: 124 --------RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG 175 R+ L+ ++ + + + G L D + E Sbjct: 122 ELDLEYETRQKRLDERQGNAEDDLKRLLVEGSTGSSLSPLSASPDWKEFELLLIKTHERN 181 Query: 176 VQHTA 180 + TA Sbjct: 182 EEETA 186 >UniRef50_A1HTW5 Response regulator receiver protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTW5_9FIRM Length = 215 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ ++IV+DE P + + A + QA I R +P L+ LD +P Sbjct: 6 RPIRVMIVDDEEPARNEIRYLLERFSDIVVVAEAESGKQALRAITRTQPHLLFLDIEMPG 65 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI+L +++A +VF TA + +A DYL+KP + ERL + + R R Sbjct: 66 MNGIDLASRIIEAGISPFLVFATAHEEF--AVKAFDVNATDYLLKPFSQERLEKCINRVR 123 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 2/132 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + + G+ ++ A + + P LI LD +LP G Sbjct: 4 RVLIVDDEDGIRFSLRGILED-EGY-EVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L L A V+ + ++ET A++ G +D++ KP++ E++ + + + Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 126 HMLESIDSASQK 137 + + + Sbjct: 122 RLRRENQALRSR 133 >UniRef50_A9KJ95 Two component transcriptional regulator, AraC family n=4 Tax=Clostridiales RepID=A9KJ95_CLOPH Length = 260 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 97/233 (41%), Gaps = 24/233 (10%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L +LI EDE + + A I + G+ + A N + I KP +++ D +P Sbjct: 2 LKVLIAEDEDIIRKGLAYTIDWLSIGYVLVGEAANGEEGLEKIRELKPDVVITDIMMPKL 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ + + V+ T+ ++ + EA+ +DYL+KP+ ++L + + + + Sbjct: 62 NGLELIRQASKEVRFKSVI-LTSYAEFDYAKEAIELKAYDYLMKPVDVDKLKEVMRKLQD 120 Query: 124 RKHMLESIDSASQKQ---IDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + Q++ +D + + + ID + + KL + Sbjct: 121 DIKLENEKELLFQQKSQGMDIKLLSSSDSYKNPYVKKAIDIMKERYIEKL--------SI 172 Query: 181 ETVAQALTISRTTARR---------YLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E++++ L +S + R YL++ + + + I G R+Y Sbjct: 173 ESISEELKVSSSYLSRKFKEDTGHTYLDFL-NMYRVQQAIRLLDEGV-YRVYQ 223 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 8/185 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T+L+V+DE E + G +I+ A N +A ++ + + ++L D +P+ Sbjct: 5 TILVVDDEPRAREGMKRVLEKWASGKHRIITAANGQEALAILRQERVHVLLTDIRMPEIT 64 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L + + V+ +A D + +A+ GV +YL+KP+ L + + R Sbjct: 65 GLEVLEGMRENEDSPVVIIISAYPDFDYAQKAISLGVLNYLLKPVKKSELFEAVERAIHV 124 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 E Q D++ NA R E A++ + + + + VA Sbjct: 125 SEQKERERVMKQLIDDKLINALDRHPQTREPIR-------EAIQFIDQRLKDDISLKDVA 177 Query: 185 QALTI 189 + + + Sbjct: 178 EHVHL 182 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 11/206 (5%) Query: 1 MT--APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT P+ +L+V+DE + + P + AG+ A + +P +IL+D Sbjct: 2 MTPQNPIRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIAQAKTLQPDVILMDI 61 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P G+ E+ + V+ T + E + EA++ G YL+K E Q++ Sbjct: 62 NMPQMDGVTATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSI 121 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + K L+ QK + ++ R P+ E GI P + + K Sbjct: 122 QQA--HKGYLQLGPGLGQK-LCQLLKTPVR--PQIEAFEGITPREQD----VLKLVATGA 172 Query: 179 TAETVAQALTISRTTARRYLEYCASR 204 + +++ L I+ T + ++ SR Sbjct: 173 SNREISETLHITEKTVKNHVSSILSR 198 >UniRef50_A6M388 Response regulator receiver protein n=3 Tax=Clostridium RepID=A6M388_CLOB8 Length = 267 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 85/200 (42%), Gaps = 5/200 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M + ++I++DE + ++ I G + A N + +I + KP +IL D Sbjct: 1 MDNIIKVMIIDDEHLIRDLIKNCIDWNEIGMEIVAEASNAVEGLNLINKEKPDIILTDIN 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P G+++ +++ + V+ T ++ E +++ GV D+++KPI + L ++ Sbjct: 61 MPVTDGLDMSKSILERYPDIKVIVITGYNEFEYAKRSIKIGVNDFILKPIDEDELRNSVL 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEP--GV 176 + + E + K I E Y D T L++ ++K + Sbjct: 121 KLKDEIQ-DEYLKKKEYKDIKEKMVVYNNIINLNDANETEDKNLSIEQIKKFIVKNISNR 179 Query: 177 QHTAETVAQALTISRTTARR 196 + + VA+ ++ + R Sbjct: 180 DLSLKLVAEYFYVNPSYLSR 199 >UniRef50_A5ZVU5 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZVU5_9FIRM Length = 509 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 3/138 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT +LIV+DE E + G + A N QA +I L+L D + Sbjct: 1 MT---NVLIVDDEKIEREGLKYLLSREEGERNVFEASNGKQALQIIRSEDIQLVLTDIKM 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ L + + ++ + SD EA+R GV +Y++KP+ E + + + Sbjct: 58 PHMDGLELSRRAKEENPALQIIIFSGYSDFTFAQEAIRYGVTEYILKPVNPEDFHKVIQK 117 Query: 121 FRQRKHMLESIDSASQKQ 138 + + +S K+ Sbjct: 118 AEKVIEQRKKKESREIKE 135 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%) Query: 5 LTLLIVEDETPLAE---MHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +LIV+DE + E + A++ RH G ++I A + +A +IE KP ++L D +P Sbjct: 1 MRVLIVDDEQHVREAIGLLADWERH--GITEIDQAADGEEAVRLIEEKKPQIVLTDMRMP 58 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ LL L V+ + D E V +R G DY++KP+ + L + L + Sbjct: 59 RKNGLELLTWLHATKPDIKVLVISGYDDFEYVRHTIRSGGIDYILKPVDPDSLNEALAKA 118 Query: 122 RQ--------RKHMLESIDSASQKQ---IDEMFNAYARGEPKDE 154 + R+HM +Q +D + + G E Sbjct: 119 VETWRLEEEKRRHMTNQNIEMNQMTPFYMDRLLSDLVNGYGSRE 162 >UniRef50_A6LTH8 Two component transcriptional regulator, LytTR family n=4 Tax=Clostridium RepID=A6LTH8_CLOB8 Length = 247 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE + + + + GF + N +A + + +P ++ D +P Sbjct: 3 IKVLIVDDEIGIRTIIKKILDKSGGFEVVGETDNGEEAIDIFKEHRPNVVFFDIEMPKCN 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+ L ++F TA + E +SEA + FDYLIKP ER+ QTL R + Sbjct: 63 GIDCARILTDIDPKTIIIFATAHA--EYMSEAFQLYAFDYLIKPFKIERVMQTLDRIKN 119 >UniRef50_Q0A576 Response regulator receiver protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A576_ALHEH Length = 243 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+DE AE + G + AG QA +P LILLD +P Sbjct: 1 MRVLVVDDEPWARRRLAEMVDAEQGHRVVAEAGTGEQALAATREHQPDLILLDIQMPGMD 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ + + + P V+F TA E A DYL+KP+ +RL L R Sbjct: 61 GLEVARRIARRERPPGVIFITAH--PEHALAAFEAKASDYLLKPVRPDRLRAALARA 115 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 8/148 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + ++I +DE + + + + + +A N +A +IE +P L++ D +P Sbjct: 2 MRVVIADDEEKVCLLIQKLVDWTAMDMEIVGVAHNGLEALELIETRRPDLMITDIRMPGC 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT---- 119 GI L+ Q + + + E A++ G DYL+KPI + L TL Sbjct: 62 DGIELIRRARQLDPALEFIIVSGYRHFEYAQSALKYGAGDYLLKPIKKDELTATLEKMHG 121 Query: 120 RFRQRKHMLESIDSAS---QKQIDEMFN 144 R+ +R L + Q +D + + Sbjct: 122 RWLRRTEQLSREEQMRLRLQSDLDRLRS 149 >UniRef50_A9KTC8 Two component transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=A9KTC8_CLOPH Length = 253 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 24/212 (11%) Query: 3 APLTLLIVEDETPLAEMHAEYIR-HIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + LLI +DE + A+YI+ H FSQI LA N QA +I +++P ++LLD +P Sbjct: 1 MSMKLLIADDEDTIRNGIAKYIKLHTDRFSQIYLAENGQQALDIILQYQPDMMLLDVQMP 60 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ +L E + + + D E +A+R G DYL+KP + + + + Sbjct: 61 LKTGLEVLQEAQKLSLVPKTIILSGYDDFEYARKALRYGAKDYLLKPCRSSEILEAINKL 120 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 Q + + + E TGI + +A+ + + T Sbjct: 121 VQE-------------------QLGTKEDVECEEGTGIHYIVSSAIEYMEEYYHKNLTLI 161 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVH 213 V+ + I TA YL ++++ + + Sbjct: 162 EVSNKVGI---TA-GYLSTLFTQNMNCGFVEY 189 >UniRef50_C0QAQ9 Sigma-54 dependent DNA-binding response regulator n=4 Tax=Deltaproteobacteria RepID=C0QAQ9_DESAH Length = 470 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 TL I++DE + + A + + +A +I + P LILLD LPD G Sbjct: 5 TLFIIDDEETIRDSLAFALEST---YTLQTFETGQEALAVIPKNPPDLILLDIGLPDISG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L ++ H V+ TA ++ TV A++ G +DYL+KP+ + L + + Sbjct: 62 IEVLQQIKGTHPGIPVIMITAFEEITTVITAMKSGAYDYLVKPLHMDALEIVIANALETV 121 Query: 126 HMLESIDSASQKQIDEMF 143 + + + ++ I E Sbjct: 122 SLKKEVKGLQEQLIQENL 139 >UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWB5_9BACL Length = 531 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 T++I++DE I G+ + A + +A +E+ P L+++D +P Sbjct: 2 FTVMIIDDEPKQRLGLQTLIPWSDLGYEVVGTASSGKEALQSLEQDVPDLLVVDIRMPGM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ LL E+ Q + V + +D E A++ GV YL+KP+ + + L + Sbjct: 62 DGLQLLQEIRQRGWKVHAVVLSGYADFEYARRAMQYGVEGYLLKPVNKQEMSALLEKLHA 121 Query: 124 R 124 R Sbjct: 122 R 122 >UniRef50_C5V0U3 Response regulator receiver protein n=2 Tax=Gallionellaceae RepID=C5V0U3_9PROT Length = 215 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 7/200 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + E+ AE + QI LA N QAR +P L+LLD ++PD G+ Sbjct: 5 ILVVDDEVGIRELLAEIL--FDEGYQIHLAENAEQARAFRHEHEPDLVLLDIWMPDTDGV 62 Query: 67 NLLHELVQAH-YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ-- 123 LL E V+ VV + +ET EA G D+L KPI+ ++L T+ + + Sbjct: 63 TLLKEWVEQDLLTMPVVMMSGHGTIETAVEATLIGAVDFLEKPISMQKLLNTVAKAIREG 122 Query: 124 --RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 R M+ + SQK E+ A + +LP +A+ + Sbjct: 123 APRPPMVVAETEVSQKFTVEIGGATKQFLLPLDLPLREAREHFDAIYFDYHLQMEAGNVS 182 Query: 182 TVAQALTISRTTARRYLEYC 201 VA+ + + RT R L+ Sbjct: 183 RVAEKIGVERTHLHRKLKQL 202 >UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKC7_9CLOT Length = 545 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 13/199 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +++V+DE + + I GF + A N +A +E +P LIL D +P Sbjct: 4 YRIILVDDEEEVRQSIIRKIDWTGAGFCVVGDAENGEEALEKVEALEPDLILTDIRMPFM 63 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++L + Q + +V + D + +A++ V +Y++KP+ E L L R + Sbjct: 64 DGLSLAERVRQKYPSVKIVIFSGYDDFDYAKQAIKLNVTEYILKPVNVEELTAILKRIKS 123 Query: 124 RKHMLESIDSASQKQ-IDEMFNAYARGEP--KDELPTGIDPLTL--NAVRKLFKEPGVQH 178 D QK+ + + Y R P +D+ + T+ N +++ E + Sbjct: 124 NLD-----DEIEQKRNVSLLRENYIRSLPILRDQFLNELVGSTVPGNVLKEKLAEYDIPL 178 Query: 179 TAET--VAQALTISRTTAR 195 VA A+ I R Sbjct: 179 AGAKKWVAAAIDIEPEEIR 197 >UniRef50_A7VVZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVZ1_9CLOT Length = 531 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 LLIV+DE + E + G + I A N +A +IE +P ++LLD +P Sbjct: 2 YKLLIVDDEKQVREGLKRLLPWQDYGITIIGEAINGREALGIIEDQRPDIVLLDIQMPVM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP 108 G+ L + + + + +D V EA++ G DYL+KP Sbjct: 62 NGLELAKRIHGQYPECKFIVLSGYNDFARVREAMKYGAVDYLLKP 106 >UniRef50_B1ZUL4 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B1ZUL4_OPITP Length = 226 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 6/184 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAG-NLAQARMMIERFKPGLILLDNYLPDG 63 + +L++EDE LA + + A + + + R P L++LD LP Sbjct: 1 MRILVIEDEAQLARHIVRALTRHG---HVASAELDGEKGLQSVLRDPPDLVVLDLNLPGV 57 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ +L L +A+ P V+ TA S++E + ++ G DYL KP + + L + + Sbjct: 58 DGLAVLARLREANSPARVLILTARSEVEHRVKGLKAGADDYLPKPFSLDELVARIEALGR 117 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 R + D K D + R + P + P + ++ L +EPG + + Sbjct: 118 RGATPTAADFL--KVADLQMDVQHRRVSRAARPVALSPREFDVLQVLMQEPGRVFSRTEL 175 Query: 184 AQAL 187 + + Sbjct: 176 CERV 179 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 3/207 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLI +DE + G + + N +A+ ++ L++ D +P Sbjct: 1 MNLLIADDEAVIRRGLLSLDWKSIGITDVYSVANGVEAKELLLSTSIDLVIFDIRMPGFS 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + + VV + S+ E A+R GV++YL+KP++ L +T+ R Sbjct: 61 GLELAQMVKERSMDVAVVLLSGFSEFEYARSAMRYGVYEYLLKPVSPNELMETMHNVMHR 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ++ DE + + L + + + + + +A Sbjct: 121 LEQKRFEQKLLSQK-DEFGEKHDAVSQVNSLFVQSSGAIKSILTDIAQNYEQNISLADLA 179 Query: 185 QALTISRTTARRYLEYCASRHLIIAEI 211 + S + R ++ +I Sbjct: 180 EKYHFSESYISRKIKK--ETGYTFVDI 204 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 2/182 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + E+ E++ G+ AG+ + A ++ L++LD +P G Sbjct: 74 KILIVDDEPRIRELIREHL-QYAGY-VCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L E+ H V+ TA + + G DY++KP + L + R Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + + + + P + + L G+ + E + Q Sbjct: 192 MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQ 251 Query: 186 AL 187 + Sbjct: 252 KV 253 >UniRef50_C6J7M7 Response regulator n=2 Tax=Bacillales RepID=C6J7M7_9BACL Length = 531 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 1/133 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +++V+DE + + G + A A +I P +++ D +P Sbjct: 6 EKYRVILVDDEPVILRSLRVAVPWEELGLEIVGEARGGEAALELIRELSPHMVISDIRMP 65 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI L+ E++ + +F + + E EA+R G FDYL+KPI ++ L + + R Sbjct: 66 GMDGITLMKEVLAENANRLFIFVSGYGEFEYAREALREGAFDYLLKPIDHDELIEMIRRA 125 Query: 122 RQRKHMLESIDSA 134 ++ D Sbjct: 126 KRTLEKRAENDKL 138 >UniRef50_B1I2H5 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2H5_DESAP Length = 343 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 27/238 (11%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P +L+V+DE E ++ +I A N QA + + + L++LD + Sbjct: 1 MAKPSRILVVDDELGPREALRLILQ---DHYEISTAQNGHQALDYLSKNEFDLVILDIRM 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD GI+LL E+ + +VV TA + ++T + A+R G DYLIKP + + + + + Sbjct: 58 PDVNGIDLLAEVKKKVPETEVVMITAYASVDTAASALRLGALDYLIKPFDRKAVMEVVEK 117 Query: 121 FRQRKHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 R+ I S ++DE+ ++ I L VR L + + Sbjct: 118 GLSRRAESRKIRS----RLDELQLANKTLRREIEKAFVNIQRHYLETVRSLVAAIDAKDS 173 Query: 180 ------------AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A + L +S ++ ++ GK+G P++I Sbjct: 174 YTKSHQERVVMFAMLLGAELGLSAGE----IDVLRQAAVLH---DIGKIGVPEQILRK 224 >UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=C6HUB1_9BACT Length = 473 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 9/164 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M++ ++L+VEDE + E A +R Q+ A + + + + P ++LLD + Sbjct: 1 MSS--SILLVEDEPLIREAFA--LRLSERGYQVTTATSAEEGLVALRTSPPDILLLDIVM 56 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G++LL E+ + V+ TA ++ EA+R G FD++ K I + L +++ Sbjct: 57 PGMSGLDLLREIRASDLDIPVILLTARGTVKDAVEAMRLGAFDFVAKNIDMDELFLSVSN 116 Query: 121 FRQRKHMLESIDSASQKQ-----IDEMFNAYARGEPKDELPTGI 159 + + + ++ +D M G + G+ Sbjct: 117 AVRFLALSREARYWTSRESGRYSLDRMIAESPAGASLRDQVAGL 160 >UniRef50_C5ERJ4 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERJ4_9FIRM Length = 538 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 3/185 (1%) Query: 5 LTLLIVEDETPLA-EMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L +++V+DE + + + G+ AG+ A A + + + L ++D +P Sbjct: 2 LKVMVVDDEMLIRKRIILGFDWEAMGYEIEDEAGDGAGALKLFAQKQYDLAIVDIAMPGM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+L+ ++ + Y ++F T SD + +A++ GV+DY++KPI E L + Sbjct: 62 NGIDLVKKIRELQYQTHIIFLTGHSDFKYAQQAIQYGVYDYILKPIHEEEFIAVLKKLHM 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP-GVQHTAET 182 + E+ + ++++ + + + + +L +E G + Sbjct: 122 KIEK-ENSRAVLFNELEKKKDYMDAVLQAKIFSDYLHDASRQDLEELIRESLGEAGICDE 180 Query: 183 VAQAL 187 A + Sbjct: 181 DAYKI 185 >UniRef50_UPI0001789951 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789951 Length = 539 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 5 LTLLIVEDETPLAEMHA-EYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 T+LIV+DE + E G+ I N A + R +P ++L D +P Sbjct: 2 YTILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQPDVVLTDINMPYM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ L + + ++ T D E +AV+ V D+++KP+ L L + + Sbjct: 62 DGLELSRHITERFPKTKIIILTGFDDFEYAQQAVKLQVTDFILKPVTAAELRDMLDKLK 120 >UniRef50_C6W416 Two component transcriptional regulator, LytTR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W416_DYAFD Length = 257 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 12/209 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 LI++DE ++ +++H A N ++A + I + +P ++ LD +P+ Sbjct: 3 YRCLIIDDEVLARDVIRTFVQHDHSIEITDEAANGSEAVVKILQHRPDVVFLDIQMPELD 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G +L E+ H P VVFTTA + A DYL+KP R Q+L R ++R Sbjct: 63 GFAVLREVWPHHQPF-VVFTTAFD--QYALRAFEVNAIDYLLKPFDEIRFHQSLGRLKER 119 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + SQ +I+E+ N R E KD+ + L + K++ T A Sbjct: 120 ------LSQKSQPRIEELVNNLLR-EQKDKEENYLQRLLVKEAGKMYLVKTDDIT-HFSA 171 Query: 185 QALTISRTTARRYL-EYCASRHLIIAEIV 212 IS T ++ + S + + + Sbjct: 172 DGNYISVYTLQKKVYTVYESLGSLESRLD 200 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +P +L+V+DE A + ++ A N A+A I F P ++L D +P Sbjct: 2 SPQRILVVDDEDNARRAIATILNEEG--YEVAEAANGAEALARIGEFSPAVVLTDVRMPQ 59 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL + V TA + +ET EA++ G ++L+KP+ +++ TL + Sbjct: 60 MDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVL 119 Query: 123 QRKHMLESIDSASQK 137 +++ + + ++ + Sbjct: 120 EKRSLRQEAEALRDQ 134 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 3/188 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 ++V+DE + + A+ + G AG+ +A + KP L++ D +P Sbjct: 4 FKAVLVDDEENVRYLLADLLESFHLGIEVTGQAGDGEEALKLCRSLKPDLVISDIKMPGL 63 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI++L + + VF +A +D E A+ G Y++KP+ E + Q L + Sbjct: 64 DGIHMLEAVKKISPEIICVFVSAYTDFEYAKAAIANGARGYILKPVEPEEMYQLLKTVKA 123 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDEL--PTGIDPLTLNAVRKLFKEPGVQHTAE 181 + Q E+ A D G + A+ + + E Sbjct: 124 EWMQSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISLE 183 Query: 182 TVAQALTI 189 ++++ + + Sbjct: 184 SISEVVFL 191 >UniRef50_P72781 NarL subfamily n=42 Tax=Cyanobacteria RepID=P72781_SYNY3 Length = 282 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 18/230 (7%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P++LL+V+DE + E ++ F + LA N +A ++ P L++ D + Sbjct: 52 MAEPISLLLVDDEPGVRESVQAFLEDSGDFK-VDLAANATEAWDYLQHHLPALVISDIMM 110 Query: 61 PDGRGINLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 P G L +L + VVF TA + + G +L KP + L + Sbjct: 111 PQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIV 170 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID----PLTLN---AVRKLF 171 R+ S S K + E++ + + P+GI P+ L+ + + Sbjct: 171 RNLLARQQASSDAGSESAK-LQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVL 229 Query: 172 KEPGVQHTAETVAQALTISRTTARRYLEYC-------ASRHLIIAEIVHG 214 + +A L S +Y+ + L+ + HG Sbjct: 230 DLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHG 279 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 7/197 (3%) Query: 1 MTAP-LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M+ P +L+V+DE L E ++ Q+ A + A A ++ + L++ D Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREG--HQVDAANDGASALRLLTQKAYNLVVTDIR 58 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P+ G+ LL + TA +ET EA+R G +DYL KP+ +RL + Sbjct: 59 MPELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVA 118 Query: 120 RFRQRKHMLESIDSASQK-QIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + + ++ Q+ Q E EP ++ + + + V L + G Sbjct: 119 KALELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIE--GESG 176 Query: 179 TAETVAQALTISRTTAR 195 T + + L I +AR Sbjct: 177 TGKELVARL-IHTRSAR 192 >UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clostridiales RepID=C5EU48_9FIRM Length = 546 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 13/199 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +++V+DE + + I GF + A N A +E +P LIL D +P Sbjct: 4 YRIILVDDEEEVRQSIIRKINWTEAGFQVVGDAENGEDAMEKVEALEPDLILTDIRMPYM 63 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L ++ Q + +V + D E +A++ V +Y++KP+ E L L R + Sbjct: 64 DGLTLAEKVRQKYPSIKIVIFSGYDDFEYAKQAIKLNVTEYILKPVNVEELTAILKRIKS 123 Query: 124 RKHMLESIDSASQKQ-IDEMFNAYARGEP--KDELPTGI--DPLTLNAVRKLFKEPGVQH 178 + QK+ + + Y + P +++ + P+ V +E + Sbjct: 124 -----NLDEEIEQKRNVSLLRENYIKSLPILREQFINELISYPVPEETVADRLQEYDIPL 178 Query: 179 TAET--VAQALTISRTTAR 195 VA A+ I R Sbjct: 179 AGAKKWVAAAIDIEPEEIR 197 >UniRef50_A1ZP21 Response regulator of the LytR/AlgR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP21_9SPHI Length = 263 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+DE EM + G + A N +A +I+ P L+ LD +P Sbjct: 3 IKVLIVDDEPIAREMINILLAEHTGLQVVGEASNGEEALKLIDTQTPDLLFLDIQMPGMT 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+L + A + G +VF TA E A DYL+KP +R QT+ + + + Sbjct: 63 GISLAQKF--AGFYGHLVFVTAYD--EYALAAFELNAIDYLLKPFTKKRFHQTIEKVQSK 118 Query: 125 KHM 127 Sbjct: 119 FQQ 121 >UniRef50_B8FWU4 Two component transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B8FWU4_DESHD Length = 265 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 13/219 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIR-HIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 LLIV+DE + + + I S++ A + A A +++ +P ++L D +P+ Sbjct: 8 YKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIVKEKRPDIVLADINMPNL 67 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+NL E+ V T E A++ GV DYL+KP++ + + L++ Sbjct: 68 DGLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILELLSKL-- 125 Query: 124 RKHMLESIDSASQKQ-IDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + + Q++ +D + + +E + L + +P + Sbjct: 126 ---VNDLKEKTEQRRAMDSLASLKQLEHGGNEGHHHYREMILQVMNHSLSDP--AFSLGR 180 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQR 221 +A+A+ +S YL ++ I + R +R Sbjct: 181 LAEAINLS----SGYLSTVFKQNFGIPFQEYLTTMRLER 215 >UniRef50_D0KVR8 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Proteobacteria RepID=D0KVR8_HALNC Length = 461 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + + AE + G++ + A + +AR +I +P LILLD ++P GI Sbjct: 6 ILVVDDEVEIRNLLAELLAD-EGYT-VSSAADANEARALIAARRPDLILLDIWMPGQDGI 63 Query: 67 NLLHELVQAHYPG-DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 +LL E + VV + +ET EA R G FD++ KPI+ ++L + + Sbjct: 64 SLLREWAELDQLVWPVVMMSGHGTVETAVEATRLGAFDFIEKPISLDKLLLVIEHGLENN 123 Query: 126 HMLESIDSASQKQID 140 + + + D Sbjct: 124 RLSRENEQLKRSVPD 138 >UniRef50_C7IBY4 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IBY4_9CLOT Length = 255 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 17/198 (8%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 LLI +DE L + Y + GF + A N QA IE+ ++L D +P Sbjct: 2 YKLLIADDEPRLRNGISNYFPWNETGFEVLYEASNGKQALEFIEKNHVDVVLSDIRMPIM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI+L E+ V+F T D E EA+ GV +Y++KP Y L + ++ Sbjct: 62 SGIDLAREIYNRGMIIKVIFLTGYKDFEYAKEAINYGVKNYVLKPTKYNELAEVFSKI-- 119 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +K + + +++ + + D GI + V+ E E Sbjct: 120 KKELDKELENKVFEDV----------GTIDSEFNGIHEKIIAEVKDYVTENYHDARLEKA 169 Query: 184 AQALTISRTTARRYLEYC 201 A + +S YL Sbjct: 170 AGRVHLSEF----YLSKL 183 >UniRef50_Q9F8J7 Putative transcriptional regulatory protein (Fragment) n=2 Tax=Bacteria RepID=Q9F8J7_CARHY Length = 130 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 92/96 (95%), Positives = 93/96 (96%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTAPLTLLIVED TPLAEMHAEYI HIPGFSQILLAGN+AQARMMIERFKPGLILLDNYL Sbjct: 1 MTAPLTLLIVEDGTPLAEMHAEYIGHIPGFSQILLAGNMAQARMMIERFKPGLILLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEA 96 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVS A Sbjct: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSTA 96 >UniRef50_C6CT05 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT05_PAESJ Length = 397 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 4/181 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MT +LI +DE+ + E I + A + +A + + ++L+D Sbjct: 1 MTRTWKVLIADDESIIREGIRSSIPWEDLQLEVVGEAEDGEEALELAVEKQANILLVDLS 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P G+ L+ L Q +V T + EA++ V DY++KP+ + LG+ L Sbjct: 61 MPIMNGLTLISHLRQQLPKCKIVIITGHDEFNYAYEAIKLEVDDYILKPVNPDMLGEVLA 120 Query: 120 RFRQRKHMLESIDSASQ---KQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 R Q+ + Q KQID+ F + + + + + PG Sbjct: 121 RVVQKLEETTVNEELLQMASKQIDKNFALLRERFCLEWIKGELGEAEIREQLSFLRMPGE 180 Query: 177 Q 177 + Sbjct: 181 E 181 >UniRef50_C6MU29 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter sp. M18 RepID=C6MU29_9DELT Length = 556 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 3/168 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ P+ +LIV+DE L + + +++ A N +A + +P ++ D + Sbjct: 1 MSDPIKVLIVDDEKMLRLNLRALLEDVG--LRVVEAENGREALDVFASERPDIVFTDLRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPI-AYERLGQTLT 119 P G+ L+ L V+ + M EAVR G +DY+ KP+ + + + Sbjct: 59 PVMDGMALIAALKSESPETPVIVLSGTVAMTDAIEAVRLGAWDYVTKPVLQADEIEIIVK 118 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAV 167 R +R ++ S + D + + +E G+ +A+ Sbjct: 119 RTLERVALIAENKSYREHLEDLVRQRTRELKKAEEKFRGLLESAPDAM 166 >UniRef50_Q5KTV1 Putative uncharacterized protein n=1 Tax=Staphylococcus aureus RepID=Q5KTV1_STAAU Length = 232 Score = 137 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 80/182 (43%), Gaps = 6/182 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +L+VED+ + +M + I+ ++ A + +A + +E + L+LLD L Sbjct: 1 MQQKINILVVEDDNDINQMLCKIIKKSKYYAI--PAYSGTEALLYLENKQWDLVLLDLML 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G +L ++ + H V+ +A ++ + ++R G DY+ KP E + + Sbjct: 59 PGISGKEVLKQVRE-HSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDA 117 Query: 121 FRQRKHMLESIDSASQKQ---IDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 +R E + S ++ +D + N ++ + + ++ L + P Sbjct: 118 LLRRYQKSEREKNTSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKI 177 Query: 178 HT 179 ++ Sbjct: 178 YS 179 >UniRef50_A6TMD1 Response regulator receiver protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMD1_ALKMQ Length = 253 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 78/196 (39%), Gaps = 14/196 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LI +DE + + ++I F + A N +A + P L L+D +P Sbjct: 2 FKVLIADDEPKIRKGLKQWIEESSYKFQVVAEAKNGKEALEYTIKASPELFLVDINMPMM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++ + ++ + VV T D + +A++ VFDYL+KP++ L + + Sbjct: 62 NGLDFISQMKKISPNSIVVIITGYDDFQYAHKAIKFNVFDYLLKPVSKNEFNNLLRKVTE 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + D A ++ K+ + + + + F + + + + Sbjct: 122 --TLGNRADEAEVMEV---------TTEKNAAYSSMIRSVKDYIDDHFDDSQLDLS--HI 168 Query: 184 AQALTISRTTARRYLE 199 AQ S++ + ++ Sbjct: 169 AQLFDTSKSYISKRMK 184 >UniRef50_B8FB26 Sensor protein n=2 Tax=Desulfobacteraceae RepID=B8FB26_DESAA Length = 504 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 76/173 (43%), Gaps = 5/173 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+DE + + + + ++ A +A ++E ++P ++ LD +P Sbjct: 8 MQILVVDDEKDIRDGCERILIRMD--CEVQKASRGEEALEIMETWRPSIVFLDLKMPGID 65 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L + + V+ T + +ET EA++ G +D++ KP +L R ++ Sbjct: 66 GMEVLRRIHEKDTDILVIVITGYATVETAIEAMKQGAYDFIPKPFEPAQLRIVAGRAIEK 125 Query: 125 KHMLE---SIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP 174 + + +++ Q+ + ++ +R E +T + + P Sbjct: 126 LRLRQETLELEAKRQRTLADLGKEQSRVRTIIEALPNGMVVTNQEGQVVLMNP 178 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax... 258 2e-67 UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4I... 253 3e-66 UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermos... 248 1e-64 UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S... 247 2e-64 UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A... 247 2e-64 UniRef50_P39486 Probable C4-dicarboxylate response regulator dct... 246 3e-64 UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Breviba... 244 1e-63 UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dct... 241 1e-62 UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammapro... 241 1e-62 UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8F... 241 2e-62 UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=... 241 2e-62 UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscol... 239 4e-62 UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkalip... 238 8e-62 UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacilla... 238 8e-62 UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacilla... 238 8e-62 UniRef50_B7VN90 Response regulator of citrate/malate metabolism ... 236 4e-61 UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=... 236 5e-61 UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=... 234 2e-60 UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Py... 232 6e-60 UniRef50_A4FKM5 Two-component system response regulator n=31 Tax... 231 1e-59 UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfi... 231 1e-59 UniRef50_C1SJK3 Response regulator of citrate/malate metabolism ... 231 2e-59 UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacil... 230 3e-59 UniRef50_A4SN90 Two-component system citrate/malate response reg... 230 3e-59 UniRef50_C1I809 Two-component system response regulator n=1 Tax=... 229 4e-59 UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacill... 229 5e-59 UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcu... 229 6e-59 UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamur... 229 7e-59 UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillu... 229 7e-59 UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillu... 228 8e-59 UniRef50_C1TQF1 Response regulator of citrate/malate metabolism ... 228 1e-58 UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinom... 228 1e-58 UniRef50_A3JET4 Response regulator of citrate/malate metabolism ... 227 2e-58 UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillu... 227 2e-58 UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B... 226 5e-58 UniRef50_C7MRE3 Response regulator of citrate/malate metabolism ... 226 7e-58 UniRef50_UPI0001C42291 response regulator receiver/unknown domai... 224 2e-57 UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus grou... 223 3e-57 UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium ... 223 4e-57 UniRef50_C1SFW1 Response regulator of citrate/malate metabolism ... 223 4e-57 UniRef50_C1TQ18 Response regulator of citrate/malate metabolism ... 222 5e-57 UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX... 222 6e-57 UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax... 222 8e-57 UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AH... 222 1e-56 UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanob... 221 2e-56 UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermos... 221 2e-56 UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=... 220 3e-56 UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=... 219 8e-56 UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax... 218 8e-56 UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carb... 218 1e-55 UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=... 218 1e-55 UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=... 218 1e-55 UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinom... 217 2e-55 UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringe... 217 3e-55 UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=... 217 3e-55 UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=... 216 4e-55 UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillu... 216 5e-55 UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinoco... 216 5e-55 UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=... 214 2e-54 UniRef50_UPI00019732B8 two-component response regulator yufM n=1... 213 3e-54 UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya... 211 1e-53 UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococ... 211 2e-53 UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism ... 211 2e-53 UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinoco... 211 2e-53 UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbel... 210 3e-53 UniRef50_B1W256 Putative two-component system response regulator... 210 3e-53 UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacilla... 210 3e-53 UniRef50_C2IT51 Response regulator of citrate/malate metabolism ... 209 4e-53 UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamur... 209 5e-53 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 209 5e-53 UniRef50_C4X351 Two-component response regulator for citrate n=2... 208 9e-53 UniRef50_A4FB60 Two-component system response regulator n=4 Tax=... 207 2e-52 UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Co... 207 3e-52 UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Therman... 207 3e-52 UniRef50_B8K774 Response regulator of citrate/malate metabolism ... 206 4e-52 UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax... 206 4e-52 UniRef50_C3JVF9 Response regulator receiver domain protein n=12 ... 206 6e-52 UniRef50_C9Z825 Putative two component system response regulator... 206 7e-52 UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geoderm... 205 1e-51 UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillu... 204 1e-51 UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=... 203 4e-51 UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=... 203 4e-51 UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacilla... 202 7e-51 UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=... 201 2e-50 UniRef50_Q8NU70 Two-component system, response regulators consis... 200 3e-50 UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus ... 197 2e-49 UniRef50_C5CAK7 Response regulator of citrate/malate metabolism ... 196 7e-49 UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinoc... 195 9e-49 UniRef50_A6W5B7 Two component transcriptional regulator, Fis fam... 195 9e-49 UniRef50_C8NS01 Two component system response regulator n=6 Tax=... 194 1e-48 UniRef50_Q03TV3 Response regulator of citrate/malate metabolism ... 194 3e-48 UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=... 194 3e-48 UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepI... 192 5e-48 UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clost... 191 2e-47 UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae R... 191 2e-47 UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillu... 190 3e-47 UniRef50_UPI0001C32222 response regulator receiver and unknown d... 190 3e-47 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 190 4e-47 UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=... 189 6e-47 UniRef50_C2ASC2 Response regulator of citrate/malate metabolism ... 189 8e-47 UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteob... 187 3e-46 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 185 1e-45 UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodo... 185 1e-45 UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus D... 182 7e-45 UniRef50_UPI000050FA19 putative two-component response regulator... 182 7e-45 UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus... 182 8e-45 UniRef50_A3CKH3 Two-component system transcriptional regulator (... 181 1e-44 UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammapr... 181 1e-44 UniRef50_UPI0001BC2D80 two-component system response regulator n... 181 1e-44 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 180 3e-44 UniRef50_B2GLU0 Putative CriR family two-component response regu... 180 3e-44 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 179 5e-44 UniRef50_Q0RQX5 C4-dicarboxylate two-component system response r... 179 5e-44 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 179 9e-44 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 178 1e-43 UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bro... 177 3e-43 UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Therman... 177 3e-43 UniRef50_A5WD77 Two component transcriptional regulator, LuxR fa... 177 3e-43 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 176 4e-43 UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bro... 176 4e-43 UniRef50_A4J6C2 Two component transcriptional regulator, LuxR fa... 176 5e-43 UniRef50_A5URU4 Two component transcriptional regulator, LuxR fa... 175 1e-42 UniRef50_UPI000050F8A6 two component transcriptional regulator, ... 175 1e-42 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 174 2e-42 UniRef50_A6TVR4 Two component transcriptional regulator, LuxR fa... 174 2e-42 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 174 2e-42 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 173 3e-42 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 173 5e-42 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 173 5e-42 UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostri... 173 5e-42 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 173 5e-42 UniRef50_B1W048 Putative two-component system response regulator... 173 5e-42 UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR fa... 171 1e-41 UniRef50_C3PHX2 Two-component system response regulator n=3 Tax=... 171 2e-41 UniRef50_UPI0001789139 two component transcriptional regulator, ... 170 2e-41 UniRef50_C0GJ72 Two component transcriptional regulator, LuxR fa... 170 2e-41 UniRef50_D1C6S1 Two component transcriptional regulator, LuxR fa... 170 2e-41 UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paeniba... 170 3e-41 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 170 3e-41 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 170 4e-41 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 170 4e-41 UniRef50_Q1AST2 Two component transcriptional regulator, LuxR fa... 170 4e-41 UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM ... 170 4e-41 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 169 5e-41 UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermop... 169 5e-41 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 169 6e-41 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 169 7e-41 UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 ... 169 8e-41 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 169 9e-41 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 169 9e-41 UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10... 168 1e-40 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 168 1e-40 UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydr... 168 1e-40 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 168 1e-40 UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR fa... 168 1e-40 UniRef50_A7NP18 Two component transcriptional regulator, LuxR fa... 167 2e-40 UniRef50_C0GF31 Two component transcriptional regulator, LuxR fa... 167 2e-40 UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=... 167 2e-40 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 167 3e-40 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 167 3e-40 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 167 3e-40 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 167 3e-40 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 167 3e-40 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 167 4e-40 UniRef50_UPI0001C351CB two component AraC family transcriptional... 167 4e-40 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 166 4e-40 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 166 5e-40 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 166 5e-40 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 166 6e-40 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 166 6e-40 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 165 8e-40 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 165 1e-39 UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 ... 165 1e-39 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 165 1e-39 UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococc... 165 1e-39 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 165 1e-39 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 164 2e-39 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 164 2e-39 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 164 2e-39 UniRef50_UPI00017896CE two component transcriptional regulator, ... 164 2e-39 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 164 2e-39 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 164 3e-39 UniRef50_D1C1C8 Two component transcriptional regulator, LuxR fa... 164 3e-39 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 164 3e-39 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 163 3e-39 UniRef50_P72781 NarL subfamily n=42 Tax=Cyanobacteria RepID=P727... 163 4e-39 UniRef50_Q1N4K0 Two-component system regulatory protein n=1 Tax=... 163 4e-39 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 163 5e-39 UniRef50_A6TNJ5 Two component transcriptional regulator, LuxR fa... 162 6e-39 UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=... 162 6e-39 UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. ora... 162 6e-39 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_UPI0000510380 two component transcriptional regulator, ... 162 8e-39 UniRef50_B8FWU4 Two component transcriptional regulator, AraC fa... 162 8e-39 UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas fl... 162 8e-39 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 162 8e-39 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 162 1e-38 UniRef50_A9QDR4 Two component transcriptional regulator, AraC fa... 162 1e-38 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 162 1e-38 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 162 1e-38 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 162 1e-38 UniRef50_C5SGD8 Two component transcriptional regulator, LuxR fa... 162 1e-38 UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyog... 162 1e-38 UniRef50_Q67JS2 Two-component response regulator n=1 Tax=Symbiob... 161 1e-38 UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synecho... 161 1e-38 UniRef50_C4RI73 Two-component system response regulator n=6 Tax=... 161 1e-38 Sequences not found previously or not previously below threshold: UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 172 1e-41 UniRef50_C6D0G6 Two component transcriptional regulator, LuxR fa... 171 1e-41 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 168 1e-40 UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 168 1e-40 UniRef50_B2JVP2 Two component transcriptional regulator, LuxR fa... 168 2e-40 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_O07528 Uncharacterized transcriptional regulatory prote... 167 3e-40 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 166 6e-40 UniRef50_UPI00018507A5 two component LuxR family transcriptional... 165 9e-40 UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Ac... 165 9e-40 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 165 9e-40 UniRef50_A9B4P1 Two component transcriptional regulator, LuxR fa... 165 9e-40 UniRef50_B4VJC2 Response regulator receiver domain protein n=1 T... 165 1e-39 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 165 1e-39 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 165 1e-39 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 165 1e-39 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 165 1e-39 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 164 2e-39 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C7MI23 Response regulator containing a CheY-like receiv... 164 2e-39 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 164 3e-39 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 164 3e-39 UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR fa... 163 3e-39 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 163 3e-39 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 163 3e-39 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 163 4e-39 UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitre... 163 4e-39 UniRef50_B2A7N5 Two component transcriptional regulator, LuxR fa... 163 5e-39 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 162 6e-39 UniRef50_A9B5L0 Two component transcriptional regulator, LuxR fa... 162 7e-39 UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 T... 162 7e-39 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 162 8e-39 UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR fa... 162 8e-39 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 162 8e-39 UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR fa... 162 9e-39 UniRef50_C7MG00 Response regulator containing a CheY-like receiv... 162 9e-39 UniRef50_C8VWU8 Two component transcriptional regulator, LuxR fa... 162 1e-38 UniRef50_C5VAN3 Two component transcriptional regulator, LuxR fa... 162 1e-38 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 162 1e-38 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 161 1e-38 >UniRef50_P0AEF6 Transcriptional regulatory protein dpiA n=99 Tax=Enterobacteriaceae RepID=DPIA_ECO57 Length = 226 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 226/226 (100%), Positives = 226/226 (100%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL Sbjct: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR Sbjct: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA Sbjct: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG Sbjct: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 >UniRef50_A4IPE5 Response regulator n=2 Tax=Geobacillus RepID=A4IPE5_GEOTN Length = 228 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ + +A N +AR + E +P ++LLD Y PD Sbjct: 2 IRVLIIEDDHRIAEINRRFVEKVEGYEVVGIATNAEEARELTEVLRPDVLLLDVYFPDMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ L + Q D++ TAA +++T+ +A+ GVFDY+IKPI + R +TL R++ Sbjct: 62 GISFLKWVRQRFSNIDIIMITAAREIDTLKQALHGGVFDYIIKPIMFNRFAETLNRYKDY 121 Query: 125 KHMLE----SIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 ++ + Q+ +DE+ + + LP GI PLTL V + K+ TA Sbjct: 122 HDKMQQWMKEKEWIGQEDVDELIGRELSAKEQPSLPKGIQPLTLEKVLVVVKQCRDGVTA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 E V Q + +SRTTARRYLEY S ++A+I +G VGRP+RIY Sbjct: 182 EEVGQQIGMSRTTARRYLEYLVSTGQVLADIAYGSVGRPERIYRK 226 >UniRef50_A1HPK0 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPK0_9FIRM Length = 233 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 1/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M ++++I+ED+ + E+H +Y+ + GF+ A + + +I + +P L ++D Y+ Sbjct: 1 METSISVVILEDDPMVLELHRQYLSKVKGFNLTGWARDGEEGVNIIAKLQPHLAIVDIYM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+++L + + + DV+ TAA D ++V + ++ G DY+IKP + R + L Sbjct: 61 PGISGLDVLKHIRRQEWNTDVILVTAAHDTDSVQQGIQYGAVDYVIKPFTFTRFKKALET 120 Query: 121 FRQRK-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 +R+ + SQK ID + N K LP G+ TL+ + +L ++ T Sbjct: 121 YRRYFCKLRTKEQLISQKDIDMLKNNIVGLSDKSMLPKGLQQTTLDLIVELLRQKNGYFT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + +A AL ISR T +RYL Y ++ + +G VGRP + + Sbjct: 181 VKEIASALGISRVTVKRYLNYLQEGGILKGMLSYGPVGRPLQKF 224 >UniRef50_Q0S242 Response regulator n=2 Tax=Rhodococcus RepID=Q0S242_RHOSR Length = 224 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 1/218 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +AE+H ++ PGF+ + +A A A + P L+LLD YLPD G+ Sbjct: 4 VLVVDDDFMVAEIHRRFVDKTPGFTTVGVARTAADALESVRTAHPDLVLLDVYLPDMSGL 63 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 ++L L V+ TAA +++TVS A+ G DYL+KP Y +L + L FR+R Sbjct: 64 DVLQRLRAEGNAVGVIMITAAREIDTVSRALHGGASDYLVKPFDYTQLQEKLENFRRRAR 123 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 LES A Q ID +F + LP G+ T V + + G ++ A+ Sbjct: 124 ALESQSGADQSLIDSLFGGKGKNPEPSRLPKGLSAETGRLVLDILRSKGE-LSSTECAEL 182 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR + RRYLE+ S L+ + +G GRP R Y Sbjct: 183 AGLSRVSVRRYLEHYLSEGLLEVRLEYGGAGRPVRRYR 220 >UniRef50_A5D2L3 Response regulator n=4 Tax=Clostridiales RepID=A5D2L3_PELTS Length = 225 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + +LIVED+ + E++ +I +PGF + +A + +A MI+ P L+LLD YL Sbjct: 1 MSQ-IGVLIVEDDPMVVEVNRGFINAVPGFKVVGVARSGREAIEMIKELSPDLVLLDIYL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ L E+ + P DV+ TAA D ET+ R G DY+IKP + RL L Sbjct: 60 PDVDGLTTLQEIRRIGLPTDVIIVTAAQDAETIQRGFRYGSIDYIIKPFKFTRLKAALNS 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +Q +ID + + + +P G++ +TL V + GV +A Sbjct: 120 YATLYNRFRRQAQMNQAEIDSLTLGRGQQVD-EGVPKGLNEVTLKQVFLYLLKEGVALSA 178 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 E VA+ + ++R TARRYL+Y ++ E+ +G VGRP Y Sbjct: 179 EEVAEGVGLARVTARRYLDYMEKSGKVVLELQYGSVGRPVNRYR 222 >UniRef50_P39486 Probable C4-dicarboxylate response regulator dctR n=8 Tax=Bacillaceae RepID=DCTR_BACME Length = 228 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T+L++ED+ + E++ ++I + GF+ I A N + +I++ +P L ++D Y+P Sbjct: 3 KKAWTVLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ L ++ Y DV+ TAASD+ETV + ++ G DY++KP +ER+ Q L ++ Sbjct: 63 SQDGLTTLQQIRANGYKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQY 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 R + + + +Q ++D M E D LP G++ +TL +++ E +AE Sbjct: 123 RSFQVKISQKEHITQSELDSMLFQQFE-EKADLLPKGLNAVTLRRIQQYLSEQNHPISAE 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA + I+R TARRYLE+ + + + +G+VGRP Y Sbjct: 182 EVADGVGIARVTARRYLEFLEQENELKLSVEYGRVGRPINRY 223 >UniRef50_C0Z7C4 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7C4_BREBN Length = 239 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 1 MTAP-LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M+ +T++IVED+ A ++ ++ + GF I A QA M+ P ++LLD Y Sbjct: 1 MSEKLITVMIVEDDEIAARIYEQFTSKLEGFQIIATATTGKQALEMLHVVTPDVLLLDIY 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPD GI+LL E+ + DVV TAA+D+ETV EA+R G + Y+IKPI ++ TL Sbjct: 61 LPDMNGIDLLREVRKHFRGIDVVMITAANDVETVREAIRGGAYSYIIKPIMIDKFMSTLE 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGE------PKDELPTGIDPLTLNAVRKLFKE 173 ++ +H L+ + Q +D++F A LP GID LTL +R +E Sbjct: 121 QYANTRHQLQQHTTIDQTAVDKLFTKAAHTPATKTVGTVTSLPKGIDKLTLKLIRDKMQE 180 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ +A +S +T RRYLE+ S + + E +G VGRP+R Y Sbjct: 181 TTQSMNADDLAALAGMSHSTVRRYLEFLVSINEVTVETFYGTVGRPERKYR 231 >UniRef50_Q9K998 Probable C4-dicarboxylate response regulator dctR n=1 Tax=Bacillus halodurans RepID=DCTR_BACHD Length = 230 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 116/220 (52%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + E++ ++ + GF+ + + + +P LILLD ++P Sbjct: 7 IRVLLIEDDPMVQEVNRMFVEKLSGFTIVGTTATGEEGMVKTRELQPDLILLDIFMPKQD 66 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ + ++ + + D++ TAA+D +T+ +R GV DYL+KP +ERL LT++ + Sbjct: 67 GLSFIKQIREQYIDVDIIAVTAANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYEEM 126 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ++ SQ +DEM D+LP G+ TL V + +E +AE + Sbjct: 127 FRKMQKEAELSQDSLDEMIKQKQAQANMDDLPKGLHAHTLQQVIERLEELDEPKSAEEIG 186 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + ++R T RRYL Y S + ++ +G +GRP + Y Sbjct: 187 RDVGLARVTVRRYLNYLESVGQVEMDLTYGSIGRPIQTYK 226 >UniRef50_C3LT43 Transcriptional regulator CitB n=40 Tax=Gammaproteobacteria RepID=C3LT43_VIBCM Length = 227 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 111/226 (49%), Positives = 153/226 (67%), Gaps = 1/226 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LIVEDET +A++H+ Y++ F + +A ++ +AR M+ KP LI LDNYL Sbjct: 1 MMELIDVLIVEDETSIADVHSFYLKQTARFRPVGVAQSINEARNMVRILKPKLIFLDNYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRGI L EL DV+F TAASDMETV EAVRCGVFDYL+KPIAY+R+ +L R Sbjct: 61 PDGRGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYLLKPIAYDRVQNSLER 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHT 179 + + L + DS +Q+ +DE+FN A+ + D LP GID LTL +++++ P +T Sbjct: 121 YLKYISSLRANDSVNQRHVDELFNFQAKTDQLDGLPKGIDELTLIKIQEIYHHEPQAAYT 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 AE + QA+ IS+TTARRYLEYC + + A I HG+VGRP+R+Y Sbjct: 181 AELLGQAIGISKTTARRYLEYCVASGFLEACIQHGRVGRPERLYQK 226 >UniRef50_A8FGV9 Response regulator n=5 Tax=Bacillaceae RepID=A8FGV9_BACP2 Length = 235 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + QA M++ L+LLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLTQIEGFELKGIATSFQQALDMLKTEAIHLVLLDIYMPGQN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + ++ DV+ +AA++++ V + +R G DYLIKP +ER L+ ++++ Sbjct: 62 GLALLSEIRKQNHSVDVIVISAANEVDVVQQTMRNGAVDYLIKPFEFERFQSALSEYKRK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG-VQHTAETV 183 + ++++S SQ +D K LP G+ TL + + G T E + Sbjct: 122 HALYQTMNSISQNDLDAKLFHKKAETEKVLLPKGLTKSTLKLIWTSIQSFGHQAFTTEDL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 A IS+ + R+YL++ ++ E+ +G +GRP Y Sbjct: 182 ANHTEISQVSIRKYLKFLEDIEVVDVEMAYGTIGRPVFQYKLS 224 >UniRef50_O05251 Transcriptional regulatory protein malR n=4 Tax=Firmicutes RepID=MALR_BACSU Length = 235 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 1/223 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ + E++ Y+ I GF +A + A ++ LILLD Y+P Sbjct: 2 INVLIVEDDPMVGELNKRYLSQIDGFQLKGIASSFQSALHILGEHHIDLILLDIYMPGKN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL EL + DV+ +AAS+++ + + +R G DYLIKP +ER L+ +R++ Sbjct: 62 GLELLTELRAQNEAVDVIVISAASELDVIKKTLRYGAVDYLIKPFEFERFQTALSDYRRK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETV 183 + + + + SQK++D K +LP G+ TL + + T E + Sbjct: 122 QKVYSTHRNMSQKELDAELFQKKEATEKVQLPKGLTKSTLKLIWSSIQSFENESFTTEDL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 A+ IS+ + R+YL++ ++ E+ +G +GRP Y+ Sbjct: 182 AKHTEISQVSIRKYLKFLEDIQVLNVEMAYGTIGRPVFQYNVN 224 >UniRef50_D1Y7M1 Response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7M1_9BACT Length = 228 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 1/224 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LIVED+ +A +H ++I + GF + + A ++R L++LD +L Sbjct: 1 MPEAIDVLIVEDDPMVAAIHRQFIGAVSGFIVAGVVSSGKDALEFLQRHPVRLVILDVFL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ L ++ + + V+ +A+ D T++ ++ G FDY+IKP +ER+ +L Sbjct: 61 PGMDGVATLQKIREMNRTVGVIVVSASRDTNTINAVLKAGAFDYVIKPFVFERIQTSLRS 120 Query: 121 FRQ-RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 F+Q + D QK++D + + ++LP G++P TL V+ L + Sbjct: 121 FQQLENRLNRGADQIDQKELDRLLQVQQKETSTNDLPKGLNPQTLQQVKNLLGHAASPLS 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + AQAL ISR TARRYLEY + E+ + KVGRP Y Sbjct: 181 SVETAQALKISRITARRYLEYLVAAGEATLELEYQKVGRPTNRY 224 >UniRef50_A6TMU0 Putative uncharacterized protein n=2 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMU0_ALKMQ Length = 235 Score = 238 bits (609), Expect = 8e-62, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 2/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++LIVED+ +A+++ Y+ + GF + +A + +A I LI+LD ++ Sbjct: 2 ISVLIVEDDQMVAKLNKHYVESVQGFEVVGVANDGEKAWKFINHNNVDLIILDIHMAKVD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L E+ + DV+F TAA + ET+ E ++ G DYLIKP YER+ L + +R Sbjct: 62 GLAFLKEMRKKLIQADVIFVTAAQESETIDEGLKLGAVDYLIKPFEYERMKSALENYERR 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAETV 183 H+L Q+ ID++ + LP G+ TL VR+ + T++ V Sbjct: 122 YHLLRKEHVIKQEDIDKITTKNPTHNQRP-LPKGLHEKTLKKVRRYMQDHKDELLTSDEV 180 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A L SR T RRYLEY S + EI +G +GRP Y Sbjct: 181 AAELEFSRVTVRRYLEYLVSIGELTLEIEYGSIGRPSNKYKM 222 >UniRef50_C0Z7K6 Two-component response regulator n=9 Tax=Bacillales RepID=C0Z7K6_BREBN Length = 253 Score = 238 bits (609), Expect = 8e-62, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + E++ ++I +PGF + +A N A +++ P L+++D ++P Sbjct: 8 IRVLIMEDDPMVQEINKQFIERVPGFVVVGIAANGADGLKLVKELTPDLVIIDIFMPIQD 67 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L EL A + DV+ TAA D T+ +R G DY+IKP +ER+ Q+L +R+ Sbjct: 68 GVKALMELRAAKHAVDVIVVTAAKDKTTIQSMLRNGAMDYIIKPFQFERIKQSLENYREF 127 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDE-------LPTGIDPLTLNAVRKLFKEPGVQ 177 + ++ +ASQ ++D++ +R + + + LP G+ +T+ + + ++ Sbjct: 128 RRRIDWEGTASQDEVDQLLFRKSREKEQADATPAREVLPKGLHAVTMEQIMRQIEKESQP 187 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A+ VA+ + I+R TARRYL+Y + ++ +G VGRP Y Sbjct: 188 LSADDVAERVGIARVTARRYLDYLEKSGSVRMDVSYGGVGRPTNRY 233 >UniRef50_C0ZHY7 Two-component response regulator n=4 Tax=Bacillales RepID=C0ZHY7_BREBN Length = 231 Score = 238 bits (609), Expect = 8e-62, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +AE++ ++ + G+ I +A N +A+ +E +P L+LLD Y PD Sbjct: 2 IRVLIIEDDLRIAEVNRRFVEKVEGYEVIGIATNGQEAKDQMEILQPDLVLLDIYFPDMD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L + + DV+ TAA +++ V EA+R GVFD++ KP+ + RL QTL +++ Sbjct: 62 GLDFLSIIKEQFPTTDVIMLTAAKEVDAVVEAIRYGVFDFITKPLIFARLQQTLRNYQEF 121 Query: 125 KHM----LESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + + D SQ QIDE+ + + P+ + GID +TL+ + + T Sbjct: 122 RQKVSDWKKDTDQISQTQIDELIARTGQKKTPETKAVKGIDQITLDKISGFLMQTQEA-T 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + V++ ISR+TARRYLEY ++ IA++ +G VGRP+R+Y S Sbjct: 181 TDLVSKETGISRSTARRYLEYLVAKGDAIADLSYGVVGRPERVYKS 226 >UniRef50_B7VN90 Response regulator of citrate/malate metabolism n=53 Tax=Gammaproteobacteria RepID=B7VN90_VIBSL Length = 231 Score = 236 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 141/228 (61%), Gaps = 3/228 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M A ++++ED+ +AE+H Y+ + GF + +A ++A M ++ KP L+LLD YL Sbjct: 1 MNAITRVMVIEDDIAIAELHHRYLEQMGGFDVVGIATTQSEALMQLDILKPDLVLLDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+++L+ + ++ DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGCGLDILNHVRGSNQGCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLEAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVRKLFKEPG-VQ 177 ++ ++ ES+ +Q +D+M A A+ LP GID +TL+ +R +F++ Sbjct: 121 YQSQQQEFESVSDLNQGLVDKMLQANAKADSRKVSTLPKGIDGVTLDKIRAIFQQADIAD 180 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 TA+ + + SRTTARRYLE+ + ++A++ +G VGRP+R Y+ Sbjct: 181 ITADEAGERIGASRTTARRYLEFLITTGELVADLNYGSVGRPERCYNK 228 >UniRef50_A7JZZ2 Transcriptional regulatory protein CitB n=4 Tax=Vibrionaceae RepID=A7JZZ2_VIBSE Length = 228 Score = 236 bits (603), Expect = 5e-61, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 137/226 (60%), Gaps = 2/226 (0%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ ++I+ED+ +AE+H +Y+ + G + +A +A M ++ KP L+L+D YL Sbjct: 1 MSMATRVMIIEDDLAIAELHHKYLSQLAGLEVVGIATTRMEAEMQLDILKPDLLLMDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ +L+ L + DV+ TAA D++T+ +A+R GV DYL+KP+ + RL L + Sbjct: 61 PDGTGLEILNTLRANNQTCDVILITAARDVDTLQQAMRGGVVDYLLKPVMFPRLDAALKK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + ++ L+ +S Q +D+M ++A + + LP GID +TL+ +R+LF G T Sbjct: 121 YVSQRQQLDIAESLDQNLVDKMLQSHANQDNLPNRLPKGIDGVTLDKIRELFPN-GSVLT 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 A+ + + SRTTARRYLEY S + A++ +G VGRP+R Y Sbjct: 180 ADEAGEKIGASRTTARRYLEYLISTGELEADLNYGSVGRPERCYKK 225 >UniRef50_UPI0001C42273 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42273 Length = 237 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 137/236 (58%), Gaps = 10/236 (4%) Query: 1 MTAPL-TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI---ERFKPGLILL 56 M P+ +LIVED+ +AE+ ++ + GF+ I L A+ + P LILL Sbjct: 1 MQNPMYNVLIVEDDFRVAEITKGFVEKVDGFNVIGLCKTGAETESFLFNLNETTPDLILL 60 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D Y+PD G++L ++ + + D+V TAA ++ T+ EA+R G+FDY++KP+ + R + Sbjct: 61 DVYIPDVNGLDLFWKIRENLHQVDIVMITAAKEVYTIEEALRGGIFDYIVKPVDFNRFKR 120 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARG-----EPKDELPTGIDPLTLNAVRKLF 171 TL F+ ++ L S + +Q++ID + A + +++LP GID +TL+ V+ + Sbjct: 121 TLDTFKDQRGSLSSKEKLNQEEIDLLTRAQSPSQSAALVEQEQLPKGIDSITLDKVKNIL 180 Query: 172 K-EPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 TA ++ +A+ ISR+TARRYLEY S AE+ +G VGRP+R+Y S Sbjct: 181 SLHSDTGITASSLGEAVGISRSTARRYLEYLVSISEARAELSYGDVGRPERLYISN 236 >UniRef50_D1Y1R1 Two-component response regulator YufM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1R1_9BACT Length = 248 Score = 232 bits (593), Expect = 6e-60, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ +A+++ Y+ + N A IE +P LI+LD Y+P Sbjct: 2 IKTIIVEDDPMVAQINRRYLDTANDIQVAAVFDNGKDALAYIEDEEPDLIILDVYMPVMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ +A DV+ TAA+D++ V EA+R G+ DYL+KP YER + + ++R++ Sbjct: 62 GLELLREIRKADIQSDVIMVTAANDVKNVEEALRLGIVDYLVKPFEYERFMEAIEKYRKK 121 Query: 125 KHMLESIDSASQKQIDEMFN--AYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAE 181 H+L+ + +Q ID + + A P +L G+ TL+ +R + G T + Sbjct: 122 AHVLKDASTLNQDAIDALVSVGAPQPQAPARDLKKGLQQRTLDMIRSHLDKMKGETCTCD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 T+A + +S+ T RRYL Y A I + + + GRP Y Sbjct: 182 TLAGVVGLSKVTVRRYLNYLAEIGEIDSSVDYETGGRPCIKY 223 >UniRef50_A4FKM5 Two-component system response regulator n=31 Tax=Actinobacteria (class) RepID=A4FKM5_SACEN Length = 231 Score = 231 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 12/230 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ + GF + A A A + +P L+LLD YLPD Sbjct: 2 IKVLVVDDDFMVAKIHSGYVSRVTGFEVVGTAHTGADALRAVGELRPELVLLDIYLPDMD 61 Query: 65 GINLLHELVQA----HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ +L EL DV+ TAA D++TV A+R G YLIKP +YE L L Sbjct: 62 GLAVLRELRAGTARPSADPDVIVITAARDLDTVRGAIRGGALHYLIKPFSYEALRDQLEN 121 Query: 121 FRQRKH---MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE---P 174 FR + A+Q+ +D +F + ARG P G+ T V + +E Sbjct: 122 FRSLHRSLSAMPGDAPAAQQDVDRLFGSRARGSSAP--PKGVSSETARIVEDILRERSAE 179 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 G +A A A +SR +AR+YLE+ + +G GRP+R Y Sbjct: 180 GGDLSATECADATALSRVSARKYLEHFVMTGRAEVRLRYGGTGRPERRYR 229 >UniRef50_B8G181 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8G181_DESHD Length = 225 Score = 231 bits (590), Expect = 1e-59, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPG-FSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +LI+ED+ +AE + Y+ I F + AQA ++ P LILLD +LP Sbjct: 2 KKIRVLIIEDDPMVAEFNKSYVEQIGHPFKVVGTCFTEAQALETLKTNMPDLILLDVFLP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 +G G++LL + ++ DV+ TAA D TV EA+R G D+LIKP ++R Q L + Sbjct: 62 NGNGMHLLKTIRDNNFLLDVILITAAKDSVTVQEALRYGAVDFLIKPFGFKRFKQALLNY 121 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 K ++++ +Q +D F+ LP G+ LTL + + + Sbjct: 122 VHLKKVIDTEQEINQADLDSRFDFLEIDYTTSSLPKGVHLLTLKLITDYLYDHPNPKSCH 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A L++SR TA +YLE+ + + + + KVGRP ++Y Sbjct: 182 EIAADLSMSRITAWKYLEHLVKQGQVTVSLEY-KVGRPTKLYK 223 >UniRef50_C1SJK3 Response regulator of citrate/malate metabolism n=5 Tax=Bacteria RepID=C1SJK3_9BACT Length = 228 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A +H + + GF + +A LA A M E KP L+LLD Y P+G Sbjct: 2 IKVLIVEDDVNIANLHRRFTEKVEGFDVVGIANGLADAFEMTEILKPELVLLDMYFPEGS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L ++ + D++ TAA D+ + EAVR G FDY++KP+ +ER ++L RF+ Sbjct: 62 GMDFLWKIRSSGILTDIILITAARDVSVLQEAVRGGAFDYIVKPVVFERFNKSLNRFKDY 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + Q ID + + ++ +P GIDP+TL + +F++ +++ V Sbjct: 122 LKEIRCEKTLEQNDIDSLLDRHSEAVINTQNMPKGIDPITLKKIISVFEKKHEAMSSDEV 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SR TARRYLEY ++ +I +G VGRP++ + Sbjct: 182 GRYIGASRNTARRYLEYLTGAGILTVDIDYGTVGRPEKRFK 222 >UniRef50_B1HPS7 Transcriptional regulatory protein n=2 Tax=Bacillaceae RepID=B1HPS7_LYSSC Length = 229 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 4/226 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L++ED+ +A++H ++ I GF+ I A +A ++ F P LILLD +L Sbjct: 1 MTD-IEVLVIEDDVRVADVHRRFLEKIEGFTVIACANTGEEALDWLQSFAPQLILLDVFL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G++L+ ++ + ++ TAA++ V +A R V DY++KP +++L +++ + Sbjct: 60 PDILGVDLIDKIKKMSPTSSIILITAATEAHIVQKAYRKNVTDYILKPFTFDQLKESIEK 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDE---LPTGIDPLTLNAVRKLFKEPGVQ 177 FR + +L++ + +Q++I ++ A P+D LP GID T+N V Sbjct: 120 FRFKHLLLQNNEKFTQEKIQCLWPKTASSIPEDTQLLLPKGIDLTTMNHVINYLSTRKDG 179 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE + + + +SR+TARRYLE+ ++ E+ +G VGRP+R Y Sbjct: 180 STAELLGKNIGVSRSTARRYLEFLVTQKQAYIELTYGTVGRPERRY 225 >UniRef50_A4SN90 Two-component system citrate/malate response regulator, CitB n=2 Tax=Aeromonas RepID=A4SN90_AERS4 Length = 223 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +AE+H +++ + GF + + L AR I KP L+LLD +LPDG Sbjct: 2 IKILIVEDDPAIAEIHRRFVQRLAGFEVLGVTLTLFDAREQIGILKPDLVLLDVWLPDGE 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL EL QA DV+ TAA + + EA+R GV D+++KP+ +ERL TL + Q Sbjct: 62 GFALLRELRQAGACLDVILLTAAREAAALQEAMRLGVVDFILKPVVFERLRDTLDNYCQS 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + L Q+ +D +F + LP GID LTL V GV +AE + Sbjct: 122 RAALAD---IDQQAVDALFGTPLQQVAAGGLPKGIDALTLQRVLAAL--TGVGASAEEIG 176 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +SRTTARRYLE+ + L E+ +G VGRP+R Y + Sbjct: 177 NRVGVSRTTARRYLEFLVGQQLASPELEYGTVGRPERRYQA 217 >UniRef50_C1I809 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I809_9CLOT Length = 232 Score = 229 bits (586), Expect = 4e-59, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + + IVED+ + E++ ++ + GF + A ++ +A++ I + K L+LLD +LPDG Sbjct: 3 KIKVFIVEDDPMVKEINTRFLEKLEGFIVVGDASSIEEAKIKITKEKADLVLLDIFLPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 +GI+LL + D + TA +V EA + G DYLIKP +ER + L+ +R Sbjct: 63 KGIDLLKWIRSKEINIDTILITADKCKSSVDEAFKYGAIDYLIKPFKFERFKEALSNYRN 122 Query: 124 RKHMLESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVR-KLFKEPGVQ 177 R L +ID+ +Q ID+ N + EL G+ T N + + ++ G Sbjct: 123 RFVELNNIDNINQDYIDQYILNINANFLDEEMQEKELCKGLSLKTYNKIINYMIQKNGQD 182 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TAE +A+ ++R TARRYLE + +GK+GRP Y Sbjct: 183 LTAEEIAKGSGLARVTARRYLEKMVEEGKVEINQEYGKIGRPTNYY 228 >UniRef50_C0ZEJ9 Two-component response regulator n=70 Tax=Bacillales RepID=C0ZEJ9_BREBN Length = 239 Score = 229 bits (585), Expect = 5e-59, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIVED+ + +++ ++ I GF I A N A+ ++ +P L+LLD YLPD G Sbjct: 6 VLIVEDDMRIIDINKRFVSKIEGFEVIATATNGTDAKELLSCTRPQLVLLDVYLPDMLGT 65 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ + Q + DV+ TAA +ME V EA+R GV+DY++KP+ +ER + L +R+ Sbjct: 66 ELVWHIRQHYREVDVIMITAAKEMEMVQEALRGGVYDYIVKPLVFERFRERLESYRKHVI 125 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDEL--PTGIDPLTLNAVRKLFKEPGV-QHTAETV 183 Q+ ID+M ++ P GID LTL V + ++ G +AE + Sbjct: 126 RTREAVEVDQEVIDQMLTRRLVAPKNRDVLAPKGIDLLTLEKVIEAIRQTGDKGVSAEEI 185 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SRTTARRYLEY A++++G VGRP+R Y Sbjct: 186 GREIGTSRTTARRYLEYLVLEKKARADLIYGTVGRPERKYR 226 >UniRef50_C9AP26 Response regulator receiver n=13 Tax=Enterococcus faecium RepID=C9AP26_ENTFC Length = 238 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT +LI+ED+ +AE++ ++ IP + I N+ + + + L+LLD Y+ Sbjct: 2 MT---NVLIIEDDPMVAELNRTFVESIPNMNVIESFRNVEEGKKYFRQKNADLLLLDVYM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI+ L L Q V+ TAA D+ET+ +R G DYLIKP +R + + Sbjct: 59 PGESGIHFLSWLRQQGNDIPVILITAADDIETIKNVIRYGALDYLIKPFTLQRFQLAIEK 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFN---AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + +++ + A QK ID++FN +LP G+ LTL + + Sbjct: 119 YLAFSQTIQTTEKADQKLIDQVFNHTTPIHETPSFIDLPKGLSKLTLKKISASILKEETI 178 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + +AQ +SR + ++YL + + ++ I + ++GRP Y Sbjct: 179 FSTKELAQKSALSRISVKKYLNFLVEQDILNERIRYLEIGRPLTCYE 225 >UniRef50_C8XBI6 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XBI6_NAKMY Length = 228 Score = 229 bits (584), Expect = 7e-59, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+D+ +A +H +++ GF +A A + P L+LLD +LPD G+ Sbjct: 10 VLVVDDDFMVARIHCRFLQTQNGFRVDGVASTGIDALAKLAELSPDLMLLDVHLPDMSGL 69 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 +L Q H DV+ TA D++ V EA + G YL+KP Y L + L FR+ + Sbjct: 70 EVLRIARQEHPRVDVIVVTAERDLDAVREAWQGGAMSYLVKPFEYTALAEKLAHFRKARA 129 Query: 127 MLESIDSASQKQIDEMFNA-YARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 +L++ + Q ID++F + P+ +LP G+ T + VR+ +A A+ Sbjct: 130 LLDTAE-VDQGAIDQLFGVGGSTTRPRADLPKGLSRETADLVRRSLS-ADEALSATECAE 187 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ISR +ARRYLEY + + +GK GRP+R+Y Sbjct: 188 RVGISRVSARRYLEYLEQTGVAQVRLKYGKTGRPERLYR 226 >UniRef50_Q65LB3 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LB3_BACLD Length = 238 Score = 229 bits (584), Expect = 7e-59, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 L + IVED+ A++H + I I GFS I +A N A+ ++ KP L+LLD +LPD Sbjct: 2 KALQVFIVEDDIRNADIHQKLISKIDGFSVIGIAENFQDAKDLLPDVKPDLVLLDIFLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ LL + Q DV+ TAA ++E V +A+R G DYLIKPI + RL +TL +R Sbjct: 62 GSGMELLWLIRQTLRHTDVMMITAAKEVEYVEQAIRAGAVDYLIKPIMFSRLKETLLNYR 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYA----RGEPKDELPTGIDPLTLNAVRKLF--KEPGV 176 + + + S Q +D + K + P GID LTL V + E Sbjct: 122 SYRLKVNEMSSIDQTDVDSLMAKRRSITKEQIAKADYPKGIDGLTLKKVAGVLNKSENSD 181 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TAE++ + + +SRTTARRYLE+ A+ + E+ +G VGRP+R Y Sbjct: 182 GITAESLGRTIGVSRTTARRYLEFLAAEKHVKTELYYGTVGRPERRYK 229 >UniRef50_Q5WJA4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJA4_BACSK Length = 223 Score = 228 bits (583), Expect = 8e-59, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I ED+ +AE+H ++++ + + A N +A + +P ++LLD YLPD Sbjct: 1 MKIMIAEDDYRVAEIHEQFLKKMKNVDVVAKAQNATEAVSLANMHQPDVLLLDVYLPDRL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+++L EL QA +V TAA++ +A++ GV DYL+KPIA+ERL Q++ + + Sbjct: 61 GVDVLPELHQACPDMQIVLITAATEKTIFHKALQNGVVDYLVKPIAFERLQQSVDKAKSL 120 Query: 125 KHMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + L+ Q+ D+ F A + P + LP GID LTL VR L ++ TAE + Sbjct: 121 RKWLQDKQPVDQQAADQFFQGAKTKHAPPEALPKGIDQLTLERVRTLLRQQSEGVTAEAL 180 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + SRTT+RRYLEY S + AE+ +G VGRP+R Y + Sbjct: 181 GRKFGASRTTSRRYLEYLISTNEAKAELEYGIVGRPERKYWA 222 >UniRef50_C1TQF1 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQF1_9BACT Length = 230 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 3/222 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + + +LIVED+ + ++H ++ IPGF + L N ++E+ L++LD Y+P+ Sbjct: 2 SDIRVLIVEDDPMVMDIHKRFVLSIPGFELVGLGANGMDGLKVLEQRSVDLVILDIYMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LHE+ + DV+ +AA + +TV + +R G FDY++KP YER + + + Sbjct: 62 LDGLETLHEIRRRRRNVDVIVVSAAHETDTVRDVMRFGAFDYIVKPFTYERFKEAMEGYL 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 Q ID + AR + LP G+ + L+ VR + E +A+ Sbjct: 122 LY---WAQKGDLDQGAIDRIMRRGAREKRDRCLPKGLGSVQLDRVRSILMEEEGALSADE 178 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 VA +SR TARRYLEY S + E +H VGRP +Y Sbjct: 179 VAVRAGVSRVTARRYLEYLVSINRAAVEPLHRDVGRPVNLYR 220 >UniRef50_C7QAY5 Putative uncharacterized protein n=4 Tax=Actinomycetales RepID=C7QAY5_CATAD Length = 243 Score = 228 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TAP+T+L+V+D+ +A++HA Y+ IPGF+ A + AQA ++ +P L+L+D YLP Sbjct: 9 TAPVTVLVVDDDYRVAKIHAAYVDRIPGFTVAGQAHSAAQALHLVAAIRPDLVLMDVYLP 68 Query: 62 DGRGINLLHELVQA------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLG 115 DG G+ ++ +L++A D + TAA D+ TV A++ G YL+KP Y + Sbjct: 69 DGDGLTVIRKLLEAPESAASGPHPDFMVITAARDVSTVRTAMQLGAVHYLVKPFGYPAMA 128 Query: 116 QTLTRFRQRKHMLESIDS--ASQKQIDEMFNAYARGEPKDELP-TGIDPLTLNAVRKLFK 172 + LT + + ++++++ A Q +DE+F LP G TL VR + Sbjct: 129 EKLTSYLDLRRRMQTLNTADADQADVDELFGLLRGQPALPTLPAKGHSAPTLELVRSAVR 188 Query: 173 EPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A VA+ + ISR TA+RYL Y ++ ++ +G GRP+ Y Sbjct: 189 AAPGDISASEVAERVGISRPTAQRYLSYLTRHGVVRLQLRYGTTGRPEHRY 239 >UniRef50_A3JET4 Response regulator of citrate/malate metabolism n=5 Tax=Gammaproteobacteria RepID=A3JET4_9ALTE Length = 231 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ LLI ED+ +AE+ +I+ + +A LA AR E KP LILLD Y PDG Sbjct: 3 PIRLLIAEDDRQIAEIQRRFIQRLEQVELCGIAHTLADAREQAEVLKPDLILLDVYFPDG 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL EL ++ DV+ TAA ++ET+ A+R GVFDY++KP+A+ERL + + RF Sbjct: 63 NGLDLLRELRASNSSSDVILITAAKEVETLRTALRGGVFDYILKPLAFERLEEAINRFCD 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKD---ELPTGIDPLTLNAVRKLFKEPGVQHTA 180 L ++ Q ++D + + D LP GID +TL+ +R++ + G +A Sbjct: 123 HVERLSALKHLGQDEVDALLPRNSGENGNDSHHRLPKGIDVITLDRIREVVAD-GKPWSA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 E V A+ SRTTARRYLEY + AE+ +G +GRP+R Y Sbjct: 182 EEVGGAMGASRTTARRYLEYMTGTRTLAAEVTYGSIGRPERRYRM 226 >UniRef50_Q5WJK0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WJK0_BACSK Length = 236 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK-PGLILLDNYLPDG 63 + +LIVED+ +A + Y+R +PGF AG + +A+ + K L+LLD Y+P Sbjct: 2 IQVLIVEDDPMVAAVVKSYLRDVPGFQVAAEAGGVEEAKQHLRENKTIQLVLLDVYMPGE 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L + DV+ TAASD E++ A+R G DY++KP + R + L ++ Sbjct: 62 NGLSLLPYLRENKIEADVILMTAASDKESIETALRFGAVDYILKPYQFSRFQKALHAYQS 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV-QHTAET 182 R + ++ QKQ+DE F K LP G+ TL V + ++ G + E Sbjct: 122 RYNFFRKEETTDQKQLDETFFEKKHTLEKQTLPKGLTKETLQEVWEAIRQVGQDSFSTED 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A +SR + ++YL + ++ + +G +GRP IY Sbjct: 182 IALHARLSRVSVKKYLTFLKELDVLQLQPTYGSIGRPIHIYR 223 >UniRef50_Q2B3M8 YufM n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B3M8_9BACI Length = 235 Score = 226 bits (577), Expect = 5e-58, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE++ Y+ + GF A ++ +A ++E+ LILLD Y+P Sbjct: 2 INVMIVEDDPMVAEINKRYLAKVEGFRLAASARSVDEAVSLLEKEDIQLILLDIYMPGRL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ L + DV+ +AA DM+ + +A+R GV DYLIKP +ER LT + Q+ Sbjct: 62 GLELVTYLRKNELETDVIIISAAKDMDRIRQALRSGVVDYLIKPFEFERFNAALTAYEQQ 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETV 183 E + +Q+++D +ELP G+ TL V + +E + + + Sbjct: 122 SRFAEKREEVTQQELDSHLLRREEPSVVEELPKGLTKDTLKQVWEAVQELKEGPFSTDEM 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRI 222 A+A+ +SR +AR+YL + ++ ++++G +GRP Sbjct: 182 AEAVGVSRVSARKYLNFLKELGILDVKVIYGTIGRPVYQ 220 >UniRef50_C7MRE3 Response regulator of citrate/malate metabolism n=2 Tax=Actinomycetales RepID=C7MRE3_SACVD Length = 227 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ +A++H+ Y+ PGF+ I A + A M +P LILLD YLPD Sbjct: 2 IRVLVVDDDFMVAKVHSGYVNRTPGFTVIGAAHSGTAALRMARDERPDLILLDIYLPDID 61 Query: 65 GINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF- 121 G+ +L EL DVV TAA D++T+ ++ G YLIKP +Y L L Sbjct: 62 GLTVLRELRADPATVDIDVVVITAARDVDTIRGSLHGGALHYLIKPFSYAVLRDQLDHVS 121 Query: 122 --RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 ++ L + +A+Q ++D++F+ R LP G+ T VR E + Sbjct: 122 SLHRKLERLSARPAAAQHEVDDVFSGRPR--RTASLPKGLTEQTAALVRTALTEHPEGLS 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A +SR + RRYLE+ A + +G GRP+R YH Sbjct: 180 ATECAHVTRLSRPSTRRYLEHFAETGQAEVRLRYGGTGRPERRYH 224 >UniRef50_UPI0001C42291 response regulator receiver/unknown domain-containing protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42291 Length = 227 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + LIVED+ +A ++ Y+ + F + + N +A I K L+LLD Y+ Sbjct: 1 MKIKTLIVEDDPMVASINQGYLEKLDSFFVVDIVTNGEEALSKIRMKKIELLLLDVYMAK 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL + + + DV+ TAA E + E R GV D ++KP ++R ++L + Sbjct: 61 MNGLELLRRIRKENEKIDVIMITAADSPEIIEEIFRLGVVDCILKPFDFKRFERSLLTYY 120 Query: 123 QRKHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 +R +M + + +Q ID + N + + LP GID +TLN +RK+ KE T + Sbjct: 121 KRYNMFNTKEPMNQSIIDSININEENKKLTFNPLPKGIDSITLNTIRKVLKEAPCPLTIQ 180 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + + IS+ T R+YLE+ A + I ++ + GRP ++Y Sbjct: 181 ELEKHVQISKITIRKYLEFLALNNEIKLDLNYSTKGRPSKLY 222 >UniRef50_Q73DS2 Response regulator n=72 Tax=Bacillus cereus group RepID=Q73DS2_BACC1 Length = 235 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIVED+ +A ++ Y+ GF + ++ A ++E + L+LLD ++P+ Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQAGGFELVQAVNSVKSAIEVLEASRVDLVLLDIFMPEET 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G LL + D++ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 62 GFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTIYREK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFK-EPGVQHTAE 181 ++ SQ ++D + + EP ELP G+ T+ + K + G T + Sbjct: 122 LTFMKEQQKISQSELDSLILQKEKREPTVMKELPKGLTKQTMQLIWKKIESLNGRAFTTD 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AQ + +SR + R+Y+ + ++ E+V+ VGRP Sbjct: 182 EMAQLVGVSRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 224 >UniRef50_A6M0I4 Response regulator receiver n=7 Tax=Clostridium RepID=A6M0I4_CLOB8 Length = 231 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ + ++++++++ I GFS NL++A+ + + + LILLD +LP+ Sbjct: 2 IKTMIVEDDPMVRQINSKFLKKIEGFSLEKAVANLSEAKEFLMQKQVDLILLDIFLPNEN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+LL L Q DV+ TA +E V +A R GV DYLIKP +ER ++L FR+R Sbjct: 62 GIDLLKWLRQNEILSDVILITADKSVERVKDAFRYGVVDYLIKPFTFERFNESLNIFRER 121 Query: 125 KHMLESIDSASQKQIDEMF-----NAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQH 178 + E+ + Q +D+ E K L G++ T N++ Sbjct: 122 LNSFENSQTMEQSDLDKFILSNKNKKTNNSETKPNLEKGLNKYTYNSIANELNNTKEEYF 181 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T E +++ L I++ T R+YL+Y + + + I +GK+GRP Y Sbjct: 182 TTEDLSEKLGIAKVTVRKYLDYMSKQGELEKIIEYGKIGRPLYKYK 227 >UniRef50_C1SFW1 Response regulator of citrate/malate metabolism n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFW1_9BACT Length = 231 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED + ++H ++ + GF + +A +L +A I +P LILLD + PDG Sbjct: 4 IQVLIIEDNERILKLHRLFLEKVDGFELVGIAKSLKEAEETIAVLQPDLILLDLFFPDGH 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ L + DV+ TA D+ ++ +A+R G FDY++KP+ ++R ++L +++ Sbjct: 64 GMSFLKHMRMQDINFDVILITADKDVNSLQDALRNGAFDYIVKPVVFDRFKESLEKYKTF 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFKEPGV-QHTAET 182 K + + + QK D +F + + E D++P GIDPLTL V+ E G A+ Sbjct: 124 KTGISAKQTIEQKDADSIFMSAQQVEYTDDDVPKGIDPLTLKKVKDTLVEYGERGICAQE 183 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + SR TARRYLEY S I A+I +G VGRP+R Y Sbjct: 184 TGKLIGASRITARRYLEYLVSGGFISADITYGSVGRPERKY 224 >UniRef50_C1TQ18 Response regulator of citrate/malate metabolism n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ18_9BACT Length = 227 Score = 222 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ +A++H Y+ + GF + + N +A + + L++LD +LP Sbjct: 4 IDVLVVEDDPMVADIHQNYVNSVDGFRVVGMVDNGLKALDFLRKRPVRLVILDIFLPGLD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ- 123 G+ L + ++ DV+ +A+ D TV++ ++ G FDY++KP A++R+ L FRQ Sbjct: 64 GLGALERIRESGSNVDVIIISASRDKATVNKTLQAGAFDYIVKPFAFDRMKAALQAFRQV 123 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + E + Q+ ID + A + + LP G++P L V L + ++ Sbjct: 124 VHRLTEGPNQVDQQDIDNLLLARNKKNIQTVLPKGLNPNVLEKVEALLTKVDKPLSSVET 183 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+A+ +SR TARRYLEY + + E + +VGRP Y Sbjct: 184 AEAIGVSRITARRYLEYLVASDKAVMEREYQEVGRPINKYE 224 >UniRef50_A8FAX8 Response regulator n=71 Tax=Bacillus RepID=A8FAX8_BACP2 Length = 233 Score = 222 bits (567), Expect = 6e-57, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LI ED+ +A +HA YI+ I GF A + +++ + LILLD Y+PD Sbjct: 1 MVMKVLIAEDDFRIAAIHASYIQQIEGFQVAGKAKSAKDMWEALQQEQVDLILLDVYMPD 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G NLL L + + DV+ TAA++ + +A++ GV YLIKP+ ++ Q LT ++ Sbjct: 61 ELGTNLLPLLRERYPEVDVMIITAATETTLLRDALQYGVVHYLIKPVTAQKFAQVLTEYK 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPK---DELPTGIDPLTLNAVRKLFKEPGVQHT 179 ++K M+ S D +Q ID F + +LPTGI+ LTL+ V+ L + + Sbjct: 121 EKKDMINSKDEVNQTMIDLFFGQMQEEPKEKGDRDLPTGINSLTLDKVKTLIESENDGIS 180 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 AE + + + SRTTARRY+EY + AE+ +G +GRP+R Y+ Sbjct: 181 AEELGEKMGASRTTARRYVEYLVTTGECRAELAYGIIGRPERKYY 225 >UniRef50_P52688 Transcriptional regulatory protein citB n=42 Tax=Enterobacteriaceae RepID=CITB_KLEPN Length = 234 Score = 222 bits (566), Expect = 8e-57, Method: Composition-based stats. Identities = 110/224 (49%), Positives = 144/224 (64%), Gaps = 2/224 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +T LIVEDE LAE+ + I+ P F I +A L AR + ++P LILLDN+LPD Sbjct: 2 DSITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQPQLILLDNFLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+GI+L+ V HY G ++F TA + MET+SEA+R GVFDYLIKP+ Y+RL TL RF Sbjct: 62 GKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERFA 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARG--EPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + L S + ASQ +D +FN AR EP GID T V +LF +P V HTA Sbjct: 122 RYRSSLRSSEQASQLHVDALFNIQAREQTEPASAPLRGIDESTFQRVLQLFADPTVVHTA 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +++A+ L S+TTARRYLE + AEI +GKVGRP+RIYH Sbjct: 182 DSLARILGSSKTTARRYLEQGVKNDFLEAEISYGKVGRPERIYH 225 >UniRef50_C3AHC9 Response regulator n=6 Tax=Firmicutes RepID=C3AHC9_BACMY Length = 231 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IVED+ +A ++ Y+ + GF + +A ++ +A +++ ILLD ++P G Sbjct: 1 MIVEDDPMVAMLNKHYLEQVGGFELVHIANSVKEAVEILKESSIDFILLDIFMPVDTGFE 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 LL + DV+ +A DM ++ +A++ GV DYLIKP +ER + LT +R++ Sbjct: 61 LLLHIRNQEKEIDVIMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTAYREKFIF 120 Query: 128 LESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFK-EPGVQHTAETVA 184 ++ SQ ++D + + E ELP G+ TL + K + G T + +A Sbjct: 121 MKEQQKISQSELDTLILQKEKVETYVNKELPKGLTRQTLQLIWKQIESLHGQAFTTDEMA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 Q + ISR + R+Y+ + ++ E+V+ VGRP Sbjct: 181 QLVGISRVSIRKYVMFLTEIGVLENEMVYQHVGRPVSKLR 220 >UniRef50_Q8ELH7 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ELH7_OCEIH Length = 222 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 119/219 (54%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+ ED+ +A++H +Y+ I A + ++ K L+LLD YLPD Sbjct: 1 MNVLVAEDDYRVADIHCQYLEKFQDIQYIERAATAYETLAKLKENKFDLLLLDVYLPDEL 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GIN++ Q H ++ TAA+D+E + +A GV DYLIKPIA +RL + + + Sbjct: 61 GINMIETYKQEHAALQIILITAATDIEMLKKAYLSGVIDYLIKPIALDRLADAINKAVKN 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S +Q+ D++F K E P GID LTL V ++ ++ TA+ V Sbjct: 121 HQFIRSQGEFTQQLADQLFQNQQEIMEKQEYPKGIDELTLKKVNEVLQKQSSGMTADQVG 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + + +SRTTARRYLEY S AE+ +G VGRP+R Y Sbjct: 181 KDIGVSRTTARRYLEYLISVGKAKAELEYGIVGRPERKY 219 >UniRef50_A1HNG4 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNG4_9FIRM Length = 226 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 114/222 (51%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LIVED+ +AE++ ++ + GF+ + + + A A + + LI+LDNYLP+ Sbjct: 2 DDIRVLIVEDDPMVAEINKKFTEAVTGFTVVGVVKDGAAALAFVAQKSVDLIILDNYLPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L EL + P DV+ TAA D +TVS +R GV Y+ KP +ER L +R Sbjct: 62 KTGVEVLAELRRRDQPVDVIMVTAADDSKTVSRILRQGVVGYIAKPFKFERYRAVLEAYR 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + +Q+ IDEMF+ R D++P T+N + +AE Sbjct: 122 SFREKTLKKTNLAQEDIDEMFSVRQRSAGPDDIPKNFSQQTMNLIIDFLANQTAPLSAEE 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A + ISR TARRYLEY + + + VGRP + Sbjct: 182 IAAGVGISRVTARRYLEYFVDLGRVQRTMEYLTVGRPVHRFK 223 >UniRef50_C9P6T7 Transcriptional regulatory protein CitB n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P6T7_VIBME Length = 228 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 144/227 (63%), Gaps = 3/227 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + ++IVED+ + ++ + I+ F+ + +A + AR +I+ ++P LILLDNYLPD Sbjct: 2 ETIDIVIVEDDVNITNIYLDIIQGFSRFTVVGIAESQKIARTIIQAYQPQLILLDNYLPD 61 Query: 63 GRGINLLHEL--VQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G GI+L ++ + DVV TA+ D+ TV EA++ G FDYL+KPI+++R QTL R Sbjct: 62 GLGIDLYRDILAQKKKRKQDVVLITASDDVNTVQEAMQLGCFDYLLKPISFDRFQQTLQR 121 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHT 179 + + +++ D+ +QK IDE+FN R + LP GI+ +TL+ + +L G + T Sbjct: 122 YLDLNNAMKAYDNLNQKYIDELFNIQHRKQQVSLLPKGIEQITLDKIIRLLSLNNGDKFT 181 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 E V+ +S+TTARRYLEYCA+ LII+E +GKVGRP+R+Y Sbjct: 182 VEKVSLHTGVSKTTARRYLEYCATHGLIISENEYGKVGRPERVYTKN 228 >UniRef50_D1PIR5 Transcriptional regulatory protein DcuR n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIR5_9FIRM Length = 221 Score = 219 bits (558), Expect = 8e-56, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 5/221 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T++IVED+ + E++ Y F+ +A + L++LD Y+P Sbjct: 2 YTVVIVEDDPMITELNRRYAEKDGRFTVAQTFSQPRRALDWLRHNPADLVILDFYMPQMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + A DV+ TAA+D TV R GV DYL+KP AYER + L F +R Sbjct: 62 GLEFLRAVRAAGVESDVIMITAANDAATVEALTRLGVVDYLVKPFAYERFCRALDAFCRR 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAETV 183 + + S Q +D + +A LP G+ T V + +PG +T E + Sbjct: 122 RSAMRG--SLDQTALDNLLHAVP--PAPATLPKGMQAQTQERVLACMRDDPGHAYTCEEI 177 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A +S T RRY+ Y A + + ++ +G GRP +Y Sbjct: 178 AAASGLSVVTVRRYMGYLAQQGQVTGDMNYGTGGRPCLVYR 218 >UniRef50_P59338 Transcriptional regulatory protein dcuR n=96 Tax=Gammaproteobacteria RepID=DCUR_ECOL6 Length = 239 Score = 218 bits (557), Expect = 8e-56, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI--ERFKPGLILLDNYLPD 62 + +LI++D+ +AE++ Y+ IPGF A L +A+ +I LILLD Y+ Sbjct: 2 INVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQK 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G++LL L A DV+ ++A+D T+ +++ GV DYLIKP R + LT +R Sbjct: 62 ENGLDLLPVLHNARCKSDVIVISSAADAVTIKDSLHYGVVDYLIKPFQASRFEEALTGWR 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFK-EPGVQHTA 180 Q+K LE Q ++D++ + + E LP G+ P TL + + + + Sbjct: 122 QKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFST 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +A + ISR + R+YL + + H++ I +G GRP Y Sbjct: 182 DELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYR 225 >UniRef50_Q3ACD4 C4-dicarboxylate response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD4_CARHZ Length = 220 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +IVED+ + E++ +I+ + GF I + ++ ++ P L++LD YLPD Sbjct: 2 IKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSPELLILDIYLPDID 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL E+ + + DV+ TAA E V+E +R GV DY+IKP ERL + L ++ + Sbjct: 62 GLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYKNK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S Q+ ID +F AR ELP G++ +TL + L +E A VA Sbjct: 122 YLKIGRKRSVQQEDIDRLF---ARSSAGGELPKGLNDITLKKILSLLEETREPLAAAEVA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + ISR TARRYLEY L EI +G +GRP Y+ Sbjct: 179 KRAGISRVTARRYLEYLEREGLAGKEIRYGSIGRPVNYYY 218 >UniRef50_Q9RC52 Transcriptional regulatory protein citT n=1 Tax=Bacillus halodurans RepID=CITT_BACHD Length = 230 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP--GLILLDN 58 MT +LI+ED+ +A++ + + P F I +A + LILLD Sbjct: 1 MTKLYKVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDV 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 Y+PD +G+ LL + + D++ TAA +++TV EA+R G+ DYL+KP+ E L Q L Sbjct: 61 YIPDVKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRL 120 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYAR-GEPKDELPTGIDPLTLNAVRKLFKEPG-V 176 + Q++ + SQ+++D++ R + LP GID LTL V +E Sbjct: 121 DAYVQKRELFGERRQVSQEELDQLRQVQVRVQVGETPLPKGIDRLTLEKVVNALEEAETQ 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 TA A+ + SR+T RRY EY AE+ +G VGRP+R Y Sbjct: 181 GLTAMEGARLIGASRSTVRRYFEYLIHTKKAKAEVNYGDVGRPERRY 227 >UniRef50_O34534 Transcriptional regulatory protein citT n=5 Tax=Bacillus RepID=CITT_BACSU Length = 226 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + + I ED+ +A++H I+ + GF I A N + +++ K L+LLD Y+PD Sbjct: 2 IHIAIAEDDFRVAQIHERLIKQLDGFKIIGKAANAKETLALLKEHKADLLLLDIYMPDEL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G L+ ++ D++ TAA++ + EA+R G+ YLIKP+ ++ Q L +++++ Sbjct: 62 GTALIPDIRSRFPEVDIMIITAATETRHLQEALRAGIAHYLIKPVTADKFRQVLLQYKEK 121 Query: 125 KHMLESIDSASQKQIDEMF-NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +L S SQ ID +F N P ++LPTGI+ +TL +++ + TAE + Sbjct: 122 RKLLMSQPEVSQSMIDHIFGNGVKTALPAEDLPTGINSITLRKIKEALQTASEGLTAEEL 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + SRTTARRY EY S+ AE+ +G +GRP+R Y+ Sbjct: 182 GEKMGASRTTARRYAEYLVSKEEARAELEYGIIGRPERKYY 222 >UniRef50_A6W416 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=A6W416_KINRD Length = 238 Score = 217 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 AP+ +L+V+D+ +A +H Y+ +P F+ + A + L+LLD +LPD Sbjct: 8 APVRVLVVDDDATVALVHRGYVETLPRFTVCGVVHRGADVLPAVRATAADLVLLDIHLPD 67 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+++L L DVV TAA D++TV +A+ GV+ YL+KP + + + + Sbjct: 68 ESGLDVLRRLRAHGVDVDVVAITAARDVDTVRDAMAGGVWHYLVKPFSLATFAERMEAYA 127 Query: 123 QRK---HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK-----EP 174 Q + + D+ Q+++D + + R LP G+ P TL+ V + + Sbjct: 128 QHRLEFARRDGSDALGQEEVDRLLTSRRRS--ASALPKGLSPRTLDVVVDHLRAGAGGDG 185 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A +A I+R + RRYLE+ L +G+ GRP+ Y Sbjct: 186 TGDVSAAELAARCGIARVSVRRYLEHLERAGLAEVRPRYGRAGRPENGYR 235 >UniRef50_Q0SVM1 Response regulator n=9 Tax=Clostridium perfringens RepID=Q0SVM1_CLOPS Length = 222 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ +A ++ ++ ++ + + ++++ LILLD YLP G Sbjct: 4 KILIVEDDPMVALINKRFLENMGFKDILGPVQTEEEIIQLLDKENIDLILLDVYLPKKNG 63 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I++L L Y DV+ TAA+ +E V A GV DYL+KP +ER + + +++Q+ Sbjct: 64 IDILKSLRYKKYLTDVIMITAANSVEEVKRAFAYGVTDYLVKPFEFERFEEAINKYKQKN 123 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP-GVQHTAETVA 184 ++L ++ SQ+ ID + + E K ELP G++ TL+ + + KE G T +A Sbjct: 124 NLLNKREALSQQDIDVISKSL---EEKIELPKGLNQKTLDRIMEFLKENKGKVWTLREIA 180 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 L IS T ++Y++Y + + G VGRP+ Y G Sbjct: 181 YELKISNVTIKKYMDYLEDIKKVNVTLTSGNVGRPEYKYTLG 222 >UniRef50_B3WBQ3 Transcriptional regulatory protein dpiA n=8 Tax=Lactobacillales RepID=B3WBQ3_LACCB Length = 229 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT +LIVED+ + +H Y+ I F I + +A A+ ++ L+LLD L Sbjct: 1 MT---NILIVEDDPMVQFIHRNYLEKIGTFDTIYSSETIADAKKLLASRSIQLVLLDIRL 57 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 DG GI+ L +L + DV+ TAA+++ V++A+ GV DYLIKP ER +++ R Sbjct: 58 KDGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQR 117 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R + L + D +Q Q+D F P +L G+ TL ++ K+ T Sbjct: 118 YRTKHQALVT-DQLNQSQLDTYFEPQTTIPPTVDLDKGLSKATLQLIQGAIKQLPQPFTV 176 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 + +S + R+YL + H + + ++ K GRP + Y Sbjct: 177 AQLTTETGLSHVSVRKYLSFLEDHHFLKGDTIYRKTGRPYKTYQM 221 >UniRef50_C9Y0H6 Transcriptional regulatory protein citB n=2 Tax=Cronobacter RepID=C9Y0H6_CROTZ Length = 260 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 2/226 (0%) Query: 1 MTAPLT-LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 M +T +LIVEDE LA +HAE ++ P + +A LA A I +P L+LLDNY Sbjct: 29 MPPEMTDVLIVEDENQLAALHAEMVKQHPYLRLVGMAATLADAERQIRDKRPHLVLLDNY 88 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPDG+GI L L + V+F TAASDM+T S+A+R G FDYL+KP++++RL +L Sbjct: 89 LPDGKGITLTESLTLKNSACSVIFITAASDMDTCSQAIRNGAFDYLLKPVSWKRLNHSLE 148 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP-GVQH 178 RF Q + Q+ +D ++ AR D GI+ TL V++LF + Sbjct: 149 RFVQFREQQRVWKIVDQQNVDSLYQLQARSFRPDSGAKGIEESTLTLVQRLFVDSREQIF 208 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + V A +S+TT RRYLE+C + E+++GK+G P+R+Y Sbjct: 209 SVDDVVSATGLSKTTTRRYLEHCVESGFLTVEMLYGKIGHPRRLYR 254 >UniRef50_Q5WKA0 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKA0_BACSK Length = 240 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T + +LIVED+ A ++ + I+ F+ + A + +++ P L+LLD LP Sbjct: 3 TPSIGVLIVEDDPVAASVYEQLIQSKLDFTIVGKAETAKATKQLLQVITPDLVLLDVQLP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 D GI+LL + Q + DV+ TA++D +TV EA R G F Y++KPI +R QTL + Sbjct: 63 DANGIDLLFHIKQLDHHVDVILITASNDAQTVGEAKRGGAFSYMLKPIIVDRFFQTLEEY 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDE--------LPTGIDPLTLNAVRKLFKE 173 + + + + +++ I +F+ G+P LP GID TL V + Sbjct: 123 KAARTKGKPKSTDAERDIQRLFHHDKTGQPASNVGLRTSGPLPKGIDKHTLKNVEEALVH 182 Query: 174 PGVQHT--AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + AE V + + S +TARRYLEY S + ++V+G VGRP+R Y Sbjct: 183 ITESESLNAEQVGKRIGTSHSTARRYLEYLVSIGAVKVDVVYGHVGRPERRYK 235 >UniRef50_Q1J047 Putative uncharacterized protein n=2 Tax=Deinococcus RepID=Q1J047_DEIGD Length = 233 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 111/223 (49%), Gaps = 6/223 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+VED+ +A ++ + + P + A LAQA +++ P LILLD +L Sbjct: 1 MTR-VRVLLVEDDLRVARVNRDLLERDPDVHVVGSAATLAQADALLQALAPDLILLDVHL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+NLL DV TAA D +V A+ G FDYLIKP RL + + R Sbjct: 60 PDGSGLNLLRHWRAQGRTTDVALITAADDEASVRTALAQGAFDYLIKPFTGARLAEVVAR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 R R+ + Q +D + G + LP GIDP TL V ++ + G +A Sbjct: 120 HRARR---VPRGTLDQSHLDRLLGV--SGGIPEPLPRGIDPHTLERVAQVLEGAGGALSA 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 E V +SR TA RYLE+ + +G GRP ++Y Sbjct: 175 EEVGDRAHLSRVTAWRYLEHLVRVGRASLDHQYGLAGRPAKLY 217 >UniRef50_UPI0001C42EA9 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EA9 Length = 224 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 3/211 (1%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A + +Y+ I GF LA +A+ ++E L+LLD Y+P G+ LL + + Sbjct: 1 MVASFNKQYVEEIKGFQLAGLAKCFDEAKQLLEENDIQLLLLDIYMPGKNGLELLQYIRK 60 Query: 75 A-HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDS 133 Y DV+ TAA D++++ A+R G DY+IKP +ER + LT +R++ +L++ S Sbjct: 61 ETAYNVDVILVTAADDVDSIQTALRYGAVDYIIKPFEFERFNKALTTYREKHSLLKAQQS 120 Query: 134 ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHTAETVAQALTISRT 192 Q+++D + LP G+ P TL + + T + +A+ + ISR Sbjct: 121 LKQEELDASILHQQEKKNM-TLPKGLTPNTLQVIAAAIVDKENEPFTTDEIAETVQISRV 179 Query: 193 TARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + R+Y++Y + + +G +GRP +Y Sbjct: 180 SVRKYIKYLKEIGALAERMTYGAIGRPFYVY 210 >UniRef50_UPI00019732B8 two-component response regulator yufM n=1 Tax=Clostridium sp. M62/1 RepID=UPI00019732B8 Length = 230 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 3/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++IVED+ +A ++ +Y+ P FS + + A + R + LI+LD Y+P Sbjct: 2 YSVIIVEDDPMVASINRQYVELEPSFSVKQIFKSGQDALSWLSREEVDLIILDYYMPLMT 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G + L V+ T+A D V E + GV DYL+KP R Q L+RF Q Sbjct: 62 GQEFIDRLHSMGKAPSVIMVTSAGDSAIVQELLSRGVLDYLVKPFERSRFRQALSRFAQT 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEP--KDELPTGIDPLTLNAVRKLFK-EPGVQHTAE 181 + L+ +Q +ID + + P + EL G+ TL +R K PG ++E Sbjct: 122 RSCLDGSPELNQAEIDRLLSHAQPASPSCQTELAKGLSETTLTLIRNFLKSRPGELFSSE 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A+ + +SR T RRY+ Y I++ + + GRP Y Sbjct: 182 QIAEQVHLSRITIRRYMNYMLEIGEIVSSVDYQTGGRPSIKY 223 >UniRef50_D2BTF7 Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech586 RepID=D2BTF7_DICD5 Length = 215 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 2/211 (0%) Query: 16 LAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA 75 +A +IR P F + A LA AR+ I KP L++LDNYLPDG GI+++ L Sbjct: 1 MAFFIESFIRKHPEFLLLGSADTLADARLAIAAQKPDLVMLDNYLPDGTGIDMMKHLRAT 60 Query: 76 HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSAS 135 DV+F TAA+D+ET+ A+R G DYL+KP ERL + L + + Sbjct: 61 QPEVDVIFITAANDIETIKAAIRHGASDYLVKPFILERLEEALKNYLMFNRKVAQKSHLQ 120 Query: 136 QKQIDEMFNAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTT 193 Q +ID + P GID LTLN VR F QHTA++++ + IS++T Sbjct: 121 QDEIDRVIRQSIPHHVPAGFIYPKGIDELTLNQVRAAFSGEHTQHTADSLSDMIGISKST 180 Query: 194 ARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 ARRYLEYC + L+ A I HG VGRPQR Y Sbjct: 181 ARRYLEYCKNIKLLEAHIQHGTVGRPQRFYR 211 >UniRef50_C9AYP4 Transcriptional regulator dpiA n=3 Tax=Enterococcus casseliflavus RepID=C9AYP4_ENTCA Length = 227 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +LIVED+ + +H Y+ + F +I + +A+ M+++ L+LLD +L D Sbjct: 1 MKANILIVEDDPMVQFIHRSYLERLAVFERIFSVETVEEAQEMLQKETIELLLLDIHLKD 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ LL L + DV+ TAA + +S+++ G+ DYLIKP ++ER Q++ F+ Sbjct: 61 GNGLELLQTLREQQQAVDVIMITAADETRLISQSLHLGMLDYLIKPFSFERFAQSIQVFQ 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 QR+ L +Q+QID + + P EL G+ TL +++ + T + Sbjct: 121 QRRESL-KHPRIAQQQIDLLLQGNQKS-PWIELEKGLTEDTLQLIQETIRTIKQPFTVQE 178 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +AQA +S + R+Y+ + I +E V+ K+GRP + Y Sbjct: 179 LAQACALSHVSVRKYVAHLEKTKAIRSENVYTKIGRPYKQY 219 >UniRef50_Q8D7P7 Response regulator of citrate/malate metabolism n=4 Tax=Vibrio RepID=Q8D7P7_VIBVU Length = 224 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IVED+ +AE+H +I + F I +A NL A +I KP L+++DNYLPDG Sbjct: 2 IKVVIVEDDERIAELHQFFIAQLDNFEVIGIAANLTTAEQLIIAAKPDLVIIDNYLPDGL 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ + + + TAA+D TV A R G FDYL+KP+ Y RL +L R + Sbjct: 62 GVELVQRCLVLQPKPECIVITAANDANTVHLAHRYGAFDYLVKPVNYTRLQASLLRLMKM 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 K +++S Q ++D +F+A E + +G+D TL V LF +HTA +VA Sbjct: 122 KQLVDSQKMVKQSELDGIFHA---TELVVDEASGVDEFTLQQVVSLFPHGHSEHTAASVA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 L +S++TARRYL+ R + A + HGKVGRP R Y + Sbjct: 179 ALLGVSKSTARRYLDKAVERGDLYAFLAHGKVGRPTRCYRN 219 >UniRef50_Q1J1H7 Putative uncharacterized protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J1H7_DEIGD Length = 217 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + LIVED+ +A +H + F + A L AR+M E P L+LLD YL Sbjct: 1 MTF-IRTLIVEDDPRIARLHRGQLEGAGDFEVLGTAETLQVARVMAETLCPDLLLLDVYL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDGRG++LL EL D V TAASD+ +V EA+ G DYL+KP ER L R Sbjct: 60 PDGRGLDLLRELRARGQRVDAVLLTAASDIPSVQEALALGAADYLVKPCTPERFALALDR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 R+R + + ++ Q +D +F +G+DP TL+ VR + G ++A Sbjct: 120 VRERSALWQQ-EAVRQGHLDALF------ARPPLPASGLDPETLHRVRATLR-SGRAYSA 171 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + Q L +SR TA RYLE+ A +GRP + Y Sbjct: 172 RELGQTLGLSRVTAWRYLEHLVEAGEACAATDVRGIGRPVKRYR 215 >UniRef50_D2Q1B0 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q1B0_9ACTO Length = 226 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +L+VED+ AE H Y+ +PGF+ + +AG A+A ++ + L+LLD L Sbjct: 1 MPELLRVLVVEDDPVAAEAHRTYVDRLPGFTCVGIAGTAARALQVLSHGQIDLVLLDMNL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G++++ + A DVV T+A ++ V A R GV Y++KP A+E L L+ Sbjct: 61 PDGHGLDVVRRMRAAGNQTDVVAVTSAREVSAVQAAARIGVVQYVLKPFAFETLRDRLSA 120 Query: 121 FRQRKHMLESIDSA-SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + +++ ES Q ++D + + +P G+ L+ V +L T Sbjct: 121 YARQRRAAESGQVVADQDEVDRLLHP----ATVSSVPKGLAGSVLDRVVQLLGNR-EGWT 175 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVH-GKVGRPQRIY 223 AE VA +L SR TARRYLE+ A + + + G+ GRP+ Y Sbjct: 176 AEEVATSLGTSRITARRYLEHLADQGQALRTQRYDGRSGRPKVEY 220 >UniRef50_B1W256 Putative two-component system response regulator n=4 Tax=Streptomyces RepID=B1W256_STRGG Length = 217 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 8/216 (3%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A++H+ Y+ + GF+ + +A N A A ER +P L+LLD YLPD GI +L L Sbjct: 1 MVAKLHSRYVSAMDGFAVVGVAHNGADALRAAERLRPDLVLLDIYLPDMDGIGVLRALRA 60 Query: 75 AH------YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 A D +F TAA D + A+R G YLIKP + L + + + L Sbjct: 61 AEERDASRPSADALFITAARDAGVIRAALRAGALHYLIKPFSRSALQEQMRHVASLRTRL 120 Query: 129 ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALT 188 + + A Q+ +D++F R ELP G+ T + V ++ + +A A+ Sbjct: 121 DRLGEARQEDVDQIFG--TRPPGSRELPKGLAAPTADLVERVLRSHPDGLSASECAEVGA 178 Query: 189 ISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +SR +ARRYLE+ A + +G GRP+R Y Sbjct: 179 LSRVSARRYLEHFAGTGRAEVTLRYGGTGRPERRYR 214 >UniRef50_B1HPQ0 Two-component response regulator n=4 Tax=Bacillaceae RepID=B1HPQ0_LYSSC Length = 273 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 11/217 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + E++ ++I I GFS + A N + I++ P L+ +D ++P+ Sbjct: 4 INVLLIEDDPMVREVNRQFIEQIKGFSLVGYASNGIEGIQKIKQLTPELVFIDIFMPEQD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L ++ + H P DV+ TAA+DM TV + GV+DY++KP +ER+ QTL +R Sbjct: 64 GIITLGKIREEHLPVDVIAVTAANDMPTVQRILHLGVYDYIMKPFTFERIEQTLKNYRSY 123 Query: 125 KHMLESIDSASQKQIDEMFNAY-----------ARGEPKDELPTGIDPLTLNAVRKLFKE 173 + + + +Q +D + +ELP G + TL+ V + Sbjct: 124 RKKISGMQDLTQHDVDHLMQQRLPEQVVITTAGTEAITIEELPKGFNRATLDKVFAYIQT 183 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAE 210 G +AE V+ + +R TARRYL++ I + Sbjct: 184 SGGAVSAEEVSTYIGTARVTARRYLDFLEKPKSIKSR 220 >UniRef50_C2IT51 Response regulator of citrate/malate metabolism n=13 Tax=Vibrionaceae RepID=C2IT51_VIBCH Length = 227 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L ++IVED+ + +HA++++ F+ + + LA A+ M+E KP L+++DNYL Sbjct: 1 MKM-LNVIIVEDDPQIGGLHAQFVQQDERFNVLAMVSTLADAQKMVEWAKPDLVIVDNYL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L+ L+ + TAA D+ET +A R G FDY++KP+ Y RL ++L R Sbjct: 60 PDGLGIELVRALIDVQPKPACILVTAACDLETAQQAYRFGAFDYVVKPVDYRRLAESLQR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 F + +H + Q+ +DE+F+ ID TL + + F V+HTA Sbjct: 120 FYRLRHPEPFSKAVRQQDLDELFHPQRSKPQTT-----IDDFTLEQMLEHFSHTNVEHTA 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +++A L IS++TARRYL+ I A + HGKVGRP R+Y Sbjct: 175 DSMALRLGISKSTARRYLDSAVEAGEITAYLEHGKVGRPTRVYR 218 >UniRef50_C8XCK5 Putative uncharacterized protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCK5_NAKMY Length = 231 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 2/219 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE A H Y+ I GF +A + +A + + L+LLD +LPDG Sbjct: 2 IRVLVVEDEPIAARAHKAYVERIGGFEVAAVANSRIEAERALAKGGIDLVLLDLHLPDGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++L + A DV+ ++A D + V AV G YL+KP A+ L LT +R+ Sbjct: 62 GLDLFRRIRAAGSTVDVMVVSSARDADVVRSAVAQGAVQYLLKPFAFNALRDRLTSYREF 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + Q + R LP G+ TL V +E G +A + Sbjct: 122 AEQVAGAEDVDQASVVRALGML-RAPNTGSLPKGMTKETLAIVVGALRELGDA-SATQIG 179 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L +SR TARRYLE+ A ++ + +G+VGRP+ Y Sbjct: 180 DFLGVSRITARRYLEHLADTNVAERTLKYGQVGRPETRY 218 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T++IVEDE +A + A+Y+ + I +A +++ AR ++ P L+LLD YLPDG G Sbjct: 3 TVIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGAITPDLLLLDVYLPDGNG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 +NLL EL +VV TAA +++ + +A++ GVFD+L+KP+ RL Q L+RF R+ Sbjct: 63 LNLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVLLSRLDQALSRFESRQ 122 Query: 126 HMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTAETV 183 L + + +Q +D + LP G+D LTL +R++F +P + TA+ V Sbjct: 123 LKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQLTLQKIREVFDAKPQDKLTAQMV 182 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + L +SR+TARRYLE+ + + A+ +G +GRP+R YH Sbjct: 183 GEKLGVSRSTARRYLEFLLECNELAADQSYGSIGRPERCYH 223 >UniRef50_C4X351 Two-component response regulator for citrate n=21 Tax=Bacteria RepID=C4X351_KLEPN Length = 233 Score = 208 bits (531), Expect = 9e-53, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 1/219 (0%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LI+EDE+ LA +HAE ++ P +A +LAQAR ++ P L+LLDNYLPDG+G+ Sbjct: 9 VLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGV 68 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L+ + A V+F TAASDMET S+A+R G FDY++KP++++RL Q+L RF Q Sbjct: 69 TLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYD 128 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ-HTAETVAQ 185 Q+ +D ++ A+ D GI+ TL V+ LF + + + V Sbjct: 129 QQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVS 188 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A +S+TTARRYLE+ + E+++GK+G P+R+Y Sbjct: 189 AAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYR 227 >UniRef50_A4FB60 Two-component system response regulator n=4 Tax=Actinomycetales RepID=A4FB60_SACEN Length = 222 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 7/221 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + + +V+D+ +A++HAE+ +P F + +A + QAR +++ P L+LLDNYLPD Sbjct: 2 IRVAVVDDDFRVAQVHAEFTERVPDFKVVGVAHSAEQARELVDTRNPDLVLLDNYLPDRS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI LL EL D + TAA+D +V A+ G +YL+KP E+LG LT + + Sbjct: 62 GIALLAEL-----DVDAIMLTAATDPASVRAALAAGALNYLVKPFTAEQLGSRLTAYARY 116 Query: 125 K-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + + Q +ID G+ P G PLT V + +A + Sbjct: 117 RGRLPVTGGAVDQDEIDRAMRLLHEGDRPAA-PKGQSPLTSQLVLDALQRGESARSAAEI 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ L I+R TA+RYL A + +G GRP+ Y Sbjct: 176 AEELGIARATAQRYLAALAQDGKARMTLRYGASGRPEHQYE 216 >UniRef50_A1UKS8 Transcriptional regulator, Fis family n=8 Tax=Corynebacterineae RepID=A1UKS8_MYCSK Length = 233 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-----FKPGLILL 56 T P+++LIVED+ +AE H Y+ + GF+ +A A L+LL Sbjct: 3 TRPISVLIVEDDPLIAEAHQTYLSRLTGFATAAVAHTARDAMRAASEAATGEHPIDLVLL 62 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D LPD GI+L L D++ T+ D+E V AV G YL+KP + Sbjct: 63 DLGLPDATGISLASALSGLRPAPDIIAITSERDLEMVRAAVSHGALAYLLKPFTFAAFRD 122 Query: 117 TLTRFRQRK-HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG 175 L R+R+ + + ID+ASQ ++D + P G P T + + + ++ Sbjct: 123 RLERYRRYRDALPAGIDAASQTEVDRALAELRGSADRATAPKGTAPGTNDEIARAVRDSA 182 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA+ VA + +SR TA RYLE A + +G+ GRP+ Y Sbjct: 183 DGLTADQVASQVGVSRVTAWRYLERLADDGTVTRLTDYGRAGRPKTRYQ 231 >UniRef50_D1B832 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B832_THEAS Length = 225 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 4/224 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ LI ED+ ++ + + + F + A N +A I K L+LLD +P+ Sbjct: 2 KPVRTLITEDDPMVSFIIGRLVNSLGDFLLVGQAQNGREALEQIRAHKVDLVLLDLSMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G ++ + DV+ T++ EA+R G +DY++KP +Y+RL +L ++ Sbjct: 62 VDGKEVMLTIRNEDLDSDVIIITSSYRKADAVEALRLGAWDYIVKPFSYDRLRVSLDSYK 121 Query: 123 -QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDP-LTLNAVRKLFKEPGVQHTA 180 ++ +Q+Q+D +F +R +GI T + + + +A Sbjct: 122 DAFRYRASLPAELAQEQLDRVFYPESRLNLYST--SGIQRGDTAQRIMDVLSQEERPLSA 179 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A + ISR T R+Y E S +IA+ + GRP + Y Sbjct: 180 GEIADKIGISRITVRKYCEALVSTGRLIAQNHYQPKGRPIKKYQ 223 >UniRef50_B8K774 Response regulator of citrate/malate metabolism n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K774_VIBPA Length = 223 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI+ED+ +A +H+++I F + +A NLAQA + + L+++DNYLPDG G Sbjct: 3 NVLIIEDDRNIAALHSQFISRDNRFQVLAIAENLAQAHSKLAQTVFDLVIIDNYLPDGLG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I+ L ++ + P + + TAA+D+ETV +A+RCG DYL+KP+ Y+R Q+L +F + Sbjct: 63 IDFLQQMRKLPNPPESILVTAANDVETVQKALRCGALDYLVKPLDYQRFAQSLEKFALVQ 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 H L S +Q ++D +F K D TL + F V+ + +A+ Sbjct: 123 HTLSHGISLAQGELDALFQKGVPSNKKSST----DAHTLKQILDEFYHANVELSVSAIAE 178 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +IS++TARRYL+ + + A + HGKVGRP RIY Sbjct: 179 SFSISKSTARRYLDKGVEQGELEAFLAHGKVGRPTRIYR 217 >UniRef50_B4VFP7 Two-component transcriptional regulator n=11 Tax=Streptomyces RepID=B4VFP7_9ACTO Length = 238 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 106/209 (50%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A ++A Y+ +PGF A + A+A ++ LILLD+YLPD G++L+ L + Sbjct: 2 RVARINAAYVEKVPGFEVAARAHSAAEALELLSDRPVDLILLDHYLPDENGLDLVRHLRR 61 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 DV+ TAA D+ TV A+R G YL+KP + L L + +H LES A Sbjct: 62 RGDLTDVIMVTAARDLATVQAAMRLGALQYLVKPFTFGALRSRLEAYGSLRHSLESGGEA 121 Query: 135 SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTA 194 Q ++D +F A + LP G P T VR++ + + + +A ISR TA Sbjct: 122 EQAEVDRIFGTLASAGTPNALPKGHSPTTAELVRQVLRSADGPLSTQQIADLAGISRQTA 181 Query: 195 RRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +RYL+ + + +G+ GRP+ Y Sbjct: 182 QRYLKLLDRTGRVTLALRYGETGRPEHRY 210 >UniRef50_C3JVF9 Response regulator receiver domain protein n=12 Tax=Actinomycetales RepID=C3JVF9_RHOER Length = 229 Score = 206 bits (524), Expect = 6e-52, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 6/226 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-----RFKPGLILLDNY 59 + +LIV+DE +A+ H Y+ +P F + + A + L+LLD Sbjct: 2 IRVLIVDDEPLIAQAHRSYVERVPEFVVHGVVHSGNAAVRAVTAANATDQPIDLVLLDIG 61 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPD G+++ L D++ T+A D+E V AV G+ YL+KP + L Sbjct: 62 LPDASGLDVASALGGLRPSPDIIAVTSARDLEVVRSAVARGIVLYLLKPFTFAAFRDKLE 121 Query: 120 RFRQRKHMLESIDS-ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 R+ + + L + +S SQ ID +A + + P G TL V ++ Sbjct: 122 RYLEYRAALPAGESAVSQHDIDRAMSALRTSDDRAAAPKGFASQTLGLVAASVRDSEGPV 181 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TA VA ++ +SR TA RYLE A ++ E +G+ GRPQ Y Sbjct: 182 TAAEVAASVGVSRVTAWRYLEKLADDGMLTRETEYGRAGRPQVRYR 227 >UniRef50_C9Z825 Putative two component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z825_STRSW Length = 231 Score = 206 bits (524), Expect = 7e-52, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 4/225 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +TLLIV+D+ + + I GF + +A +A RF P L+LLD +LP Sbjct: 5 SKEITLLIVDDDPVVTTALRAQVNRISGFRVVAIAHTGREALAATRRFAPNLVLLDLHLP 64 Query: 62 DGRGINLLHELVQ-AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 D G+++ H+L + + P DV+ + + + V A++ G YLIKP + QTL R Sbjct: 65 DIPGLDVAHQLRRPDYPPTDVIVISGSRESTAVRAAMQRGALHYLIKPARTGTVEQTLLR 124 Query: 121 FRQR-KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + H+ Q+ ID +F + PTGI P T V G + Sbjct: 125 YAAASAHLSAGASMVEQRAIDRVFRSLHLDAVVR--PTGISPATEQVVLDALAAAGRDLS 182 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A A+A+ ISR TARRYLE+ A R ++A + +G GRPQ Y Sbjct: 183 AHETAEAVGISRATARRYLEHLADRGEVVASLRYGLSGRPQHRYR 227 >UniRef50_D2S8J9 Putative uncharacterized protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S8J9_9ACTO Length = 228 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 4/222 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VE+E A++ +++ + F+ A A A + L+LL +LPD Sbjct: 1 MRVLVVENEATTAQLLVGHVQRLRDFAVTEQASTGADALRRLAPGHVDLVLLGVHLPDMS 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 ++LL L A VV TA D+ + A+ GV YL+KP + + + L ++ Sbjct: 61 WLDLLRTLRGAGCTVGVVAVTATHDLSVIRTALAFGVVHYLLKPFTFTSVREQLEKYEAY 120 Query: 125 KHMLESIDS-ASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG--VQHTAE 181 + + + Q+++D++ R ++ LP GI +L AV K +A Sbjct: 121 RSLRNVGELVLVQQEVDQLLGVL-RDADENRLPKGISRESLQAVTAALKRCSGLGGVSAA 179 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA+AL ISR T RRYLE+ + + GRP+ Y Sbjct: 180 EVARALGISRVTTRRYLEFLVDKGAAHRRARYRGPGRPELEY 221 >UniRef50_Q5WAT4 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WAT4_BACSK Length = 247 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 3/225 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TA + + ++ED+ +A H ++ + GF I A L Q +I+ KP L+LLD ++ Sbjct: 14 TAVIKVAVIEDDIDVARFHRLFLSKVAGFELIGEAHTLEQGVHLIQTQKPDLLLLDVFVG 73 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+++L + DV+ T+A+D +TV R GV DYLIKP ++ R + L R+ Sbjct: 74 QENGLDVLKRIRAEDTNTDVILITSANDAKTVQTGSRYGVVDYLIKPFSFARFQEALNRY 133 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 R L++ S +Q+ +D + + + + LP GI T V E A Sbjct: 134 --RASQLDANASFTQQDVDRLLHKGGQRKVYA-LPKGIAKETAIRVLSCLIEADDSLAAA 190 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 + IS + R+Y+ + L+ E+V+ GRP + Y + Sbjct: 191 ELEARTEISHVSLRKYMRFFEEEQLVEKELVYQSSGRPLQTYKAS 235 >UniRef50_C5NYA0 Transcriptional regulatory protein MalR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYA0_9BACL Length = 226 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ +A +H EY + + ++ AR + LI+LDNYL DG+ Sbjct: 1 MRVLIIEDDPMVAMIHKEYFKKKELTDDLNHVTSIEDAREYLANNDVDLIVLDNYLIDGQ 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L EL ++ TAA+D++TV A+ GV DYL+KP YER Q + + + Sbjct: 61 GIEYLPELKGY----PIIMITAANDVQTVEAALSNGVVDYLVKPFTYERFAQAIDKVQDY 116 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +L + +Q IDE N+ E +D LP G+ +TL V + K+ T + +A Sbjct: 117 VKLLSK-EKINQDLIDEYLNSGRIEEDEDNLPKGLSRITLKKVLEAIKQHNSGFTTQQIA 175 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 L ISR T R+YL + + +++ + + GRP ++ Sbjct: 176 DKLDISRITIRKYLNHLVNINILSEDAEYYTSGRPVSVF 214 >UniRef50_A0KHN5 Transcriptional regulatory protein DpiA n=2 Tax=Aeromonas RepID=A0KHN5_AERHH Length = 230 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ L++ED+ + + AE + PGFS + A +L QA +M+ +P L+L+D LPD Sbjct: 2 EPIFTLVIEDDERIGSILAELVSSTPGFSLLGRAESLTQADLMMRAAQPQLLLVDISLPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ ++ L + V+ TA+ D+ET+ +A+ GV DY+IKP+ R+ Q+L Sbjct: 62 GSGLEWVNRLRSHNREAYVIMVTASCDVETIQQALNQGVQDYIIKPLRLFRIQQSLDEIL 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYA-RGEPKDELPTGIDPLTLNAVRKLFK-EPGVQHTA 180 + S Q +D + +G + P GID +TL V +L EP + Sbjct: 122 TLHRRICERGSLEQSDLDRLMGKVRPQGREVRDTPKGIDAITLRQVLELLAGEPDSAFST 181 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +TVA L++SRTTARRYLEY S + ++ +G+ GRP+R YH Sbjct: 182 DTVALRLSLSRTTARRYLEYLESEDRVDVDLNYGQRGRPERRYH 225 >UniRef50_B9DS01 Response regulator protein n=25 Tax=Lactobacillales RepID=B9DS01_STRU0 Length = 227 Score = 202 bits (515), Expect = 7e-51, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 110/226 (48%), Gaps = 7/226 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI+ED+ + +H Y+ I F IL + +++ A+ + +F LILLD ++ DG Sbjct: 1 MNVLIIEDDPMVDFIHRNYLEKINHFQNILSSDSISDAKEKLVQFSIQLILLDIHIKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+NLL + H +V+ +AA+D + G+ DYLIKP ++R +++ RF Sbjct: 61 GLNLLEYIRANHINCEVIIISAANDGNIIKTGFHFGIIDYLIKPFTFDRFEESIRRFFDH 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDE------LPTGIDPLTLNAVRKLFKEPGVQH 178 + L + Q ID + + + + L G+ T + + Sbjct: 121 QKQLNQM-VIKQSAIDFLKSQQSNDKQAITNKTNLLLEKGLSQDTYQLIIDAIQRLSKPF 179 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T + + + +S + R+Y+ Y + +++E ++ KVGRP ++Y Sbjct: 180 TIQDLTEETCLSHVSVRKYIAYMEENNQLVSEQIYTKVGRPYKVYQ 225 >UniRef50_C3WFB7 Two-component system response regulator n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WFB7_FUSMR Length = 220 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVED+ +A ++ EY+ + + K LI+LD +L + G Sbjct: 3 NVLIVEDDPMVAMINEEYLSSFQNIKVLGRTFTEKDTLDFLTTHKVDLIILDVFLGEENG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L ++ Y DV+ T+A+ E + +A G DYLIKP +ERL ++ + R Sbjct: 63 IEILKKIRTLGYTTDVIMITSANGGEDIKKAFSFGCIDYLIKPFDFERLKISIDKIFTRD 122 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAETVA 184 +L Q ID + + LP G++ TL V ++ P + + + Sbjct: 123 EILNKS-KVKQDSIDNIHS----TPSSLNLPKGLNSKTLEKVTQIISNLPNEEFGIKDIC 177 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 Q IS T ++YL+Y + I + +G +GRP +Y Sbjct: 178 QITDISNVTIKKYLDYLENIKYITSFTNYGNIGRPLYLYKK 218 >UniRef50_Q8NU70 Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=2 Tax=Corynebacterium glutamicum RepID=Q8NU70_CORGL Length = 218 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 10/225 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +L+++D+ +A +HA + PGFS + A LA+A+ +I F P L+L+D YL Sbjct: 1 MDQTLKVLVIDDDFRVAGIHASIVDASPGFSVVGTARTLAEAKTLIATFSPDLLLVDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ D +AA D++TV A+R G YL+KP +RL + L R Sbjct: 61 PDGDGIDLVGT-----SNIDAFVLSAADDIKTVRRAMRAGALGYLLKPFPQKRLVERLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +H+L SQ +ID+ + + T + + G + +A Sbjct: 116 YVRYRHVLSGTQGLSQDKIDQATAILNGTQAPVTVSR---SATEQLLLDALE--GQELSA 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHS 225 ++A +SR TA+R L AS+ +I + +G+ GRP+ +Y Sbjct: 171 TEASEAAGVSRATAQRRLAAMASQGVIQVRLRYGQSGRPEHLYSK 215 >UniRef50_Q53VZ6 Response regulator n=1 Tax=Thermus thermophilus HB8 RepID=Q53VZ6_THET8 Length = 217 Score = 197 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 112/222 (50%), Gaps = 15/222 (6%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P LIVED+ +A +H ++ G +AG L +A +E P L+LLD YLPD Sbjct: 7 KPAQALIVEDDRRVAALHRAFLEE-EGLRVGGIAGTLREAWAFLEEN-PDLVLLDLYLPD 64 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G G+ LL L V TAA D+ TV A+ G DYL+KP RL + L RFR Sbjct: 65 GHGLELLPAL----EGVYTVVITAARDVPTVERALLGGAMDYLVKPFGRSRLREALARFR 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +++ + SQ +D + + + P G+DPLTL V L + G TAE Sbjct: 121 AFQNLKAKKE-VSQADVDRLLG-------RRQAPKGLDPLTLGRVLALLQ-GGKPLTAEE 171 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 VA+AL +SR TA RYLE + AE +G GRP R Y Sbjct: 172 VAEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYR 213 >UniRef50_C5CAK7 Response regulator of citrate/malate metabolism n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAK7_MICLC Length = 238 Score = 196 bits (498), Expect = 7e-49, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 120/234 (51%), Gaps = 11/234 (4%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-------RFKPG 52 MTA P +L+VEDE AE + ++ +PGF +AG+L AR + RF Sbjct: 1 MTARPYRVLVVEDEQLTAEAYVAHLDRLPGFEVSAVAGSLLAARQVAAAGLHTDGRFPFD 60 Query: 53 LILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 ++LLD LPDG G++ LH+L A + G V+ TAA+D+ V AV GV YL+KP ++ Sbjct: 61 VVLLDMNLPDGHGLDFLHQLRAAGFHGGVLALTAATDLPVVRRAVAYGVTQYLVKPFGFD 120 Query: 113 RLGQTLTRFRQRKHMLESIDSAS-QKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF 171 L FR ML + Q+Q+D +F +R + LP G+ TL V L Sbjct: 121 EFADRLGGFRAASAMLAGDGALEGQEQVDAVF-RVSRERRAEALPKGLTEGTLREVMDLL 179 Query: 172 -KEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +P +A V + L ISR TARRYLE+ + HG GRP++ Y Sbjct: 180 GADPETALSAAEVGERLGISRVTARRYLEHLERIRRVRRSARHGGRGRPEQEYR 233 >UniRef50_C1CYN9 Putative response regulator, CheY n=1 Tax=Deinococcus deserti VCD115 RepID=C1CYN9_DEIDV Length = 219 Score = 195 bits (497), Expect = 9e-49, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 1 MT-APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MT AP+ LIVED+ +A++H + GF + A L AR M +P L+LLD + Sbjct: 1 MTRAPIRTLIVEDDPQIADLHRRLLERAGGFEVLGSAETLRIARAMSRTLRPDLLLLDVH 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 LPDGRG++LL EL D V TAASD +V A+ G DYL+KP ER L Sbjct: 61 LPDGRGLDLLRELRLEGAQVDAVLVTAASDASSVQSALLHGAADYLVKPATPERFALALE 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 R R+R + D Q +D +F P + +G+D TL VR ++ G HT Sbjct: 121 RVRERAALWAQRD-VRQGHLDALF------TPLADDASGLDAETLRRVRAALRD-GAAHT 172 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 A+ V QAL +SR TA RYLEY ++ + A VGRP + Y Sbjct: 173 AQEVGQALGLSRVTAWRYLEYLTAQGEVSAAADARSVGRPAKRYR 217 >UniRef50_A6W5B7 Two component transcriptional regulator, Fis family n=3 Tax=Actinomycetales RepID=A6W5B7_KINRD Length = 231 Score = 195 bits (497), Expect = 9e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE----RFKPGLILLDNYL 60 + +L+VED+ LA HAE + +PGF + + +A + L+LLD L Sbjct: 2 IRVLVVEDDPLLAAGHAEKVAAVPGFEVVAAVHSGREALAAVGAAGADTPIDLVLLDMTL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ +L L A P DV+ TAA + TV +A+ GV YL+KP + L + L Sbjct: 62 PDVDGLQVLRALRAAAVPADVIAVTAAREPATVRQALSMGVVQYLLKPFSAAALEERLRA 121 Query: 121 FRQRK---HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEP--G 175 + + + Q+ IDE + P G+ TL AV + Sbjct: 122 YARFRADVAAASGEHGIDQQAIDEALSQLRTAAPGR----GVAAPTLQAVVAALRTAPSS 177 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A VA A +SR +ARRYLE+ ++ + E +G GRP+ Y Sbjct: 178 QGLSAAEVAAATGLSRVSARRYLEHLSAAGRVRREPRYGGSGRPELAY 225 >UniRef50_C8NS01 Two component system response regulator n=6 Tax=Actinomycetales RepID=C8NS01_COREF Length = 218 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 10/223 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ L +L+V+D+ +A++HA + PGF+ + A +A+AR+ + L+L D YL Sbjct: 1 MSRTLQVLVVDDDFRVADLHAAAVEAAPGFTVVGTARTVAEARVFLAEHPVDLLLADIYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L D +AA D+ TV A+R G YL+KP L L R Sbjct: 61 PDGDGITLARA-----SDVDAFILSAADDVPTVRRALRAGALAYLVKPFPQRVLIDRLDR 115 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +H+L SQ+++D+ + + T + + +A Sbjct: 116 YARYRHVLSGSQGLSQEKVDQALAILNGAQAPTPVSR---SATEQLLLDAL--GDGELSA 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 A+ +SR TA+R L AS L+ + +G+ GRP+ +Y Sbjct: 171 SEAAELAGVSRATAQRRLAAMASSGLVQVRLRYGQSGRPEHLY 213 >UniRef50_Q03TV3 Response regulator of citrate/malate metabolism n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TV3_LACBA Length = 238 Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 6/225 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFS--QILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LI+ED+ + ++ ++ IP I+ + A + + LILLD YLP Sbjct: 1 MKILIIEDDPMVRLINHRFLERIPQLQAATIVECPSAVAALARPDLAEYTLILLDMYLPQ 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G L EL+ V+ TAA+D +T+ EAV GV D+LIKP ++R Q + +F Sbjct: 61 LSGTEFLAELLGRQLHPQVIMMTAANDQQTLKEAVNYGVLDFLIKPFTFDRFQQAMAKFT 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYA---RGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + + + + SQ +D +F ELP G+ L+L + + Sbjct: 121 RLLAVDDKH-TVSQTDLDSLFLGATVPVSTTTTAELPKGLTKLSLQRIVTALATLKPGFS 179 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + VA +SR + ++Y+++ + + + IV+ GRP + Sbjct: 180 NQDVADQTGLSRVSTKKYVDFLVAMGYLTSAIVYQSSGRPLTTFQ 224 >UniRef50_UPI0001C42F37 two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42F37 Length = 231 Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 110/215 (51%), Gaps = 6/215 (2%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A+ +A ++ IP F + +A + + + LILLD Y+ + G++LL EL + Sbjct: 1 MVAKFNAIFVERIPEFKLVGVARGIEEGWTYLNEEAVDLILLDVYMTNENGLDLLMELRR 60 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 ++P DV+ ++A+D ++ A+R G DYLIKP ++R L R++Q + ++ Sbjct: 61 ENHPVDVIVVSSANDRGSIQTALRFGAVDYLIKPFEFDRFQDALLRYKQTFQDM-KKEAI 119 Query: 135 SQKQIDEMF---NAYARGEPKDE--LPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTI 189 Q+++D +F + PK + LP GI T V + + + + A I Sbjct: 120 QQEEVDRLFLTKGNSNKNVPKADLPLPKGITKETYIRVLREINKHSDWFSTNDLVDATGI 179 Query: 190 SRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 SR + R+YL+Y + +++ ++ + + GRP Y Sbjct: 180 SRVSLRKYLQYLTNSDILLFDVDYQRTGRPLHQYK 214 >UniRef50_C2JJ49 Response regulator n=23 Tax=Lactobacillales RepID=C2JJ49_ENTFA Length = 230 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLI+ED+ +A +H +Y+ + I +A+ ++ + +P L+LLD +L DG Sbjct: 1 MNLLIIEDDPMVAYIHQKYLEKLIHQPTIFTVATIAEGLLLTKEKQPALVLLDVHLKDGN 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + +V+ TAA+++E V ++ GV DYL+KP ++ER Q++ ++++ Sbjct: 61 GLTYLATIRDEKIDTEVILITAANELENVKRSLHLGVLDYLVKPFSFERFQQSIENYQKK 120 Query: 125 KHMLE-SIDSASQKQIDEMFNAYARGEPKDE-------LPTGIDPLTLNAVRKLFKEPGV 176 SQ ++D++F+ K+E L G+ TL + K E Sbjct: 121 TAQFTLETKELSQTKVDQLFHYSQTNARKNEQALQNMSLEKGLTQATLQLLLKKIDEFTD 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T + +++A +S + R+Y+ + +L+ ++ + KVGRP + Y Sbjct: 181 YFTIQELSEASQLSHVSVRKYVLFLEKNNLLESKNSYLKVGRPYQSYR 228 >UniRef50_Q894L8 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q894L8_CLOTE Length = 233 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I+ED+ + E++ ++ I GF A NL +A I + K LILLD YLP Sbjct: 2 IKVMIIEDDPMVMEINYRFLNKIEGFKVCKKASNLKEAYDYILKHKLDLILLDIYLPREN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L +L + D + TA +++ EA+ G DY+IKP + R +T +R + Sbjct: 62 GLEFLKKLRKDEIGLDAIIITADRSKDSLKEALMYGAVDYIIKPFTFNRFEETFKNYRGK 121 Query: 125 KHMLESIDSASQKQIDEMFNAYA----------RGEPKDELPTGIDPLTLNAVRKLFKEP 174 LE++D Q +D++ + L G++ T + + + Sbjct: 122 YIKLENLDQLEQNTVDKLISNTRCGDCNKKNTLEPREYTHLIKGLNKFTYEKIWEHIHKR 181 Query: 175 GVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 TAE +A+ + ++R T R+YLEY + + ++ +GKVGRP+ Y Sbjct: 182 QNYFTAEEIAKEIGMARITIRKYLEYMCIENKLGFKLEYGKVGRPRHEYK 231 >UniRef50_B1LPU5 Response regulator n=34 Tax=Enterobacteriaceae RepID=B1LPU5_ECOSM Length = 241 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDG 63 +LIV+D+ +A++ + P F +A +L QA+ +I K LILLD Y+ Sbjct: 3 NVLIVDDDILVADVIRRIVEQTPAFKCCGIALSLGQAKEIISVNKKLADLILLDLYINKD 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++LL L H DV+ +AA D T+ +++ GV DYLIKP RL +LTR++ Sbjct: 63 NGLDLLPFLHSIHCKSDVIVISAADDSATIKDSLHYGVSDYLIKPFHISRLVDSLTRWKH 122 Query: 124 RKHMLESIDSASQKQIDEMFNA-YARGEPKDELPTGIDPLTLNAVRKLF-KEPGVQHTAE 181 +K +LES +Q ++D + + E LP G+ TL + + + + T Sbjct: 123 KKTLLESQKIFNQSELDLLTHKIIPNTEKIRHLPKGLSTDTLRIICRWIDEHQHKKFTLN 182 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +A + ISR + R+Y+ + S H++ + G GRP Y Sbjct: 183 ELASGIKISRISCRKYIIWLVSCHILAFDFSCGVTGRPAYRYW 225 >UniRef50_C3DC45 Putative uncharacterized protein n=2 Tax=Bacillus thuringiensis RepID=C3DC45_BACTU Length = 231 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 8/218 (3%) Query: 15 PLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQ 74 +A ++ ++I G I GN+ + +I + P LILLD YLP GI+ L + Q Sbjct: 1 MVAMINQQFIGRFKGLRIIASVGNIGELWNIINKNVPDLILLDVYLPGETGIDFLQTVRQ 60 Query: 75 AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSA 134 ++ TAA D+ T+ +++ GV D+LIKP +YER + F Q + ++ Sbjct: 61 KQLSIPIIMITAAHDIPTIKKSLEYGVIDFLIKPFSYERFELAIENFLQYHSLTTKLEET 120 Query: 135 SQKQIDEMFNAYA--------RGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 Q +D++ E ++ G+ +TL + + + + E + + Sbjct: 121 DQDTLDQILIKERVPSLVNPACKELSSKISKGLSKITLKKILHVIVKQEGYFSTEDITKK 180 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +SR + ++YL + + E+ + VGRP ++H Sbjct: 181 VDLSRVSTKKYLLFLNEIGYLSEELKYLAVGRPITVFH 218 >UniRef50_UPI0001C32222 response regulator receiver and unknown domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32222 Length = 230 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI ED+ +A +H I P F I +A Q + +P L+LLD L G Sbjct: 5 RVLIAEDDPDVARLHRLLIERHPAFKAIGVAEAGEQVLRDVATQRPDLVLLDLELRGMDG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L + + Y +V+ TAA D E V +R G+ DYL+KP ER+ L RF +R Sbjct: 65 LEVLSWMRRLAYDVEVIAVTAADDREIVRRMMRLGIVDYLVKPFTPERMRVALARFSERV 124 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 L + A AR LP G+ TL+ +R+ G + + + Sbjct: 125 AGLPGSTVTQAAVDAALGAADARRL----LPRGLQADTLDRLRQELAHAGEWLSTQELGG 180 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIV-HGKVGRPQRIYHS 225 + ++ T RRYLEY + + +G GRP+++Y S Sbjct: 181 RVDVAAVTVRRYLEYLVVNQEAVTRLDGYGSPGRPRKLYRS 221 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 3/213 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ P+ +LIV+D + P F + A + ++A + + P +IL+D L Sbjct: 1 MS-PINILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ + L + V+ T D E + A+R G Y K I E+L +TR Sbjct: 60 PGMNGLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITR 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTG-IDPLTLNAVRKLFKEPGVQHT 179 + ++++ + + + + + D +G PLT + ++ ++ Sbjct: 120 VARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREI-EILDCVARGYS 178 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +AQAL IS T + ++ + + Sbjct: 179 NKEIAQALNISDQTVKNHITSILRKLAVNDRTQ 211 >UniRef50_UPI0001AF749E putative transcription regulator n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF749E Length = 221 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 9/221 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + L++L+V+D+ +A MHA + +PGF+ A +A AR L L+D YLPD Sbjct: 4 SDLSVLVVDDDFRVANMHAGVVAAMPGFTVTGTANTVAAARE---APAVDLALVDVYLPD 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G GI+ + EL + TAA++ ETV A+ G YL+KP L L+ + Sbjct: 61 GSGIDFVRELRSDS-----MILTAATEAETVRAAMAAGALSYLVKPFPTTELAARLSGYA 115 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + +L + + S + +D +A + T V + K +A Sbjct: 116 RYRKIL-AGANLSARDVDAALDALRPRLAPAQSSATAASPTKQLVLQALKTSQTPMSAAE 174 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA A+ ISR TA+RYL AS + + +G GRP++ + Sbjct: 175 VAAAIGISRATAQRYLAAMASSGDVSVGLRYGATGRPEQEF 215 >UniRef50_C2ASC2 Response regulator of citrate/malate metabolism n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ASC2_TSUPA Length = 220 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 7/223 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MT + +L+V+D+ +A MHA+ + +PG + A +++AR +I R + L L+D YL Sbjct: 2 MTDEIRVLVVDDDFRVAAMHAKIVDTMPGLVTVGSARTVSEARAVIARERVDLALVDVYL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ EL D AA D ++ G YLIKP L + + Sbjct: 62 PDGSGIDLVRELR-----CDAFILGAADDAASIRAGFAAGALQYLIKPFPATELARRIGG 116 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +++ + +Q+QID +A + G +T + ++ G A Sbjct: 117 YTSYRRIVDGG-AITQEQIDAAASALRSERVVPKRDDG-GSVTERRIVDALRDAGSPLLA 174 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 + +A+ + +S TARRYL + + +G GRP++ Y Sbjct: 175 DEIAERVGVSPATARRYLADQVRAGTLTMALQYGTTGRPRQRY 217 >UniRef50_A1REF6 Response regulator receiver n=6 Tax=Gammaproteobacteria RepID=A1REF6_SHESW Length = 225 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 108/218 (49%), Gaps = 2/218 (0%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +I+ED+ + I P F ++++ A M + +KP L+ +D LPDG GIN Sbjct: 1 MIIEDDPKASYALESIIHQHPDFEVVVVSETYQDALMHYDLYKPQLVFVDITLPDGSGIN 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 ++ +L + TTA + TV + V+ GV DYL+KP+ R+ Q L ++ + Sbjct: 61 VIKQLRSQGANCYFIMTTAEREATTVEQVVQLGVSDYLVKPLRMSRVRQALDDYKLYRQK 120 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG-VQHTAETVAQA 186 L ++ Q ID + P P GID TL+ ++ + ++ + + + ++ Sbjct: 121 LACHETMDQCVIDHILGK-RTNLPMRRTPKGIDANTLDTLKDILRKEQLTEFSGDDISDR 179 Query: 187 LTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + +SR T RRYLEY S +I + + GRP R+Y Sbjct: 180 MNVSRITIRRYLEYLESEGVIKMVLNYKTGGRPSRVYQ 217 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 91/208 (43%), Gaps = 6/208 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D +R PG + AGN +A + +P + LLD ++P Sbjct: 10 IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMPVCN 69 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ ++ +A+ ++ T + E + EAV+ G Y++K ++ ERL + + + + Sbjct: 70 GLETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEG 129 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + ++ S S + K I E P E T + R++ + + + +A Sbjct: 130 EPVVPS--SLAMKMIAEFSRTAETRMPSSESVTELTERE----REVLQYLSAGASNKEIA 183 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 +AL IS T R ++ + + + Sbjct: 184 RALFISENTVRNHVRHILDKLHLSNRAQ 211 >UniRef50_Q9L4T4 Putative transcriptional regulator n=1 Tax=Rhodococcus sp. S9 RepID=Q9L4T4_9NOCA Length = 237 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 18 EMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHY 77 ++ + + +A ++AQAR ++ L L+D YLPDG GI+L+ EL Sbjct: 33 NAVCHHLNSLDQYEVAAVATSIAQARELLTTQSFDLALVDVYLPDGSGIDLVREL----- 87 Query: 78 PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQK 137 P D V +AA+D TV A+ G + YLIKP L LT + + L+ D +Q Sbjct: 88 PCDAVVLSAAADQATVRSAMTAGAWTYLIKPFPRSALVDRLTGYLGYRGALDRSDELTQA 147 Query: 138 QIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRY 197 ID +A + +T + V + +A VA A+ ISR TA+RY Sbjct: 148 DIDGGLDALRPRAAAPLPAS--QSVTRDLVLDAVRGTAEPMSAGEVAAAIGISRATAQRY 205 Query: 198 LEYCASRHLIIAEIVHGKVGRPQRIY 223 L S+ + ++ +G GRP++ Y Sbjct: 206 LATLVSKGRLRMQLRYGSTGRPEQEY 231 >UniRef50_B1I404 Response regulator receiver n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I404_DESAP Length = 224 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 108/222 (48%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 L ++++ + + E H + + +PG +L + A ++ + L+LL+ L Sbjct: 1 MILKAVVLDSDPVMLEAHEDVLSLVPGCMVVLSTVSARSALEVLCGDETVLLLLELKLSG 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ LL E+ + P DV+ T A D T+ +A+R G+FDY+IKP RL ++ + Sbjct: 61 ADGLELLREIRRQGLPVDVIVVTGAEDAGTLEQALRLGIFDYIIKPYRRHRLKSSVESYA 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 L + +Q +D+ P D+LP G+ LT+ V E +AE Sbjct: 121 AMYVTLCGKQAVNQAWVDDHVFRRFPNLPADKLPKGLHRLTMEQVVLFLGENIAGVSAEE 180 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 VA+ + SR TARRYLEY A L ++ +G +GRP Y Sbjct: 181 VARGIGFSRATARRYLEYLARNGLARPDLEYGSIGRPTTKYR 222 >UniRef50_UPI000050FA19 putative two-component response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FA19 Length = 232 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 12/226 (5%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-------ERFKPGLILLDNYL 60 L+VEDE A HA+YI I G+ +A N QA + + L+LLD L Sbjct: 2 LVVEDEAVAARAHAKYIDRIDGYHLAGVAKNATQAMAALTGKIYGLDADCINLVLLDMNL 61 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG G+ + + D++ TAA DM+ V EA+ GV Y+IKP + L Sbjct: 62 PDGHGLQVCRAIRGHRVDVDIIAVTAARDMQIVQEALSYGVAQYIIKPFTFPVFKSKLEA 121 Query: 121 FRQRKHML---ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 + ++ L + +Q +D A R G+ V+ + + Sbjct: 122 YSSYRNSLGGDSTEGEVTQTDVDTAIAAL-RTHTVTATAKGVPDAVQAEVKSVLGDKP-G 179 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 +A VA+ L +SR TARRYLE A ++ +G GRP Y Sbjct: 180 QSAAEVAEGLGVSRVTARRYLEAMADAGMLNRRPRYGAAGRPVLEY 225 >UniRef50_A9WA66 Response regulator receiver n=2 Tax=Chloroflexus RepID=A9WA66_CHLAA Length = 218 Score = 182 bits (463), Expect = 8e-45, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 79/210 (37%), Gaps = 2/210 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LIV+D+ + A + + AGN +A ++ P ++L+D +P Sbjct: 1 MTIRVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVASLDPDVVLMDVMMPV 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L + V+ T D E V +++ G YL+K + + L ++ Sbjct: 61 MDGVEATRKLAERGPRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADSIRTVA 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 ++ + + + + P+ + + R + + +T + Sbjct: 121 GGGALIHP--QIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYTNQE 178 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + L +S T + +L ++ + Sbjct: 179 IGEQLALSVGTVKNHLSVIFAKLAVRDRTQ 208 >UniRef50_A3CKH3 Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative n=30 Tax=Bacteria RepID=A3CKH3_STRSV Length = 227 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 3/208 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI +D+ + E + + G+ + + R +P +IL+D +P Sbjct: 2 IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRVRPDVILMDIRMPVMD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ + + + ++ T D E + A++ G Y++K ++ E L + + + Sbjct: 62 GVLCTKAVKEQYPDVKIIILTTFDDDEFIFSALKYGASGYILKGVSTEELHEAIQTVYRG 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 M+ + +I E T K+ ++ G + + +A Sbjct: 122 GAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMSRTE---WKIIQQIGFGISNKEIA 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 L +S T R YL ++ + Sbjct: 179 AKLFLSEGTVRNYLSGILAKLNLRDRTQ 206 >UniRef50_A4VGG4 Two-component response regulator n=2 Tax=Gammaproteobacteria RepID=A4VGG4_PSEU5 Length = 241 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M L +LIVED+ + ++ +Y+ + G + ++ A ++ L+LLD YL Sbjct: 1 MKTALRVLIVEDDPMVMRLNVDYLARLDGIELVGQCASVPAALELLADETVDLLLLDVYL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 + G+ +L L D V TAAS++ETV A R GV DYL+KP ++ER + Sbjct: 61 RNRSGLEVLRYLRAEDRNTDAVLITAASEIETVRAAQRLGVRDYLVKPFSFERFRDAVES 120 Query: 121 FRQRK-HMLESIDSASQKQIDEMFNAYARG--EPKDELPTGIDPLTLNAV-RKLFKEPGV 176 R+ + + + Q ID +F+ A +LP G+ P +L V + + Sbjct: 121 CRRARDALSRLPEQLGQGDIDRLFSQPAAADVRRPGDLPKGLTPASLAQVAQAILALEED 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 T+E + A +SR + R+YL++ L+ +G++GRP Y Sbjct: 181 SFTSENLLTATGMSRVSVRKYLKHLTDAQLLEESFHYGQIGRPSFRYR 228 >UniRef50_UPI0001BC2D80 two-component system response regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D80 Length = 218 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 7/223 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+++D+ + ++H Y+ + GF + +L AR +I + L+L D LP+G Sbjct: 2 INVLVLDDDFYVGQIHCRYVNEVAGFQALEPVRDLRTARTIIAEEQVDLLLADYVLPEGN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ E D + +A +D + V A+R G Y+ KP A E L L R+ + Sbjct: 62 GVELIRE-----TDVDAIVLSAVTDPDVVRSALRAGAMTYIFKPFAAEELQDFLRRYARF 116 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELP-TGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + SQ ++ + P G T + + + TA V Sbjct: 117 RRYWDR-EKVSQPDLERQLRSLHDVASPGSAPAKGSGSSTSGRILEALESADQPLTAMEV 175 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYHSG 226 ++ + SR TA+R+L A + + +G GRP+ +Y G Sbjct: 176 SEVVGTSRATAQRHLAKLAESRAVTVSLQYGSTGRPEHLYGMG 218 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 180 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 10/214 (4%) Query: 1 MT--APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT +T+LI +D + + E + + P + A +A M R++P +I++D Sbjct: 1 MTDIEKITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDI 60 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P GI + Q ++ T D E + E +R GV Y++K I+ E L Q + Sbjct: 61 NMPGLNGIEATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAV 120 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + ++ ++ + +P P I PLT R++ + Sbjct: 121 YQVARGARVIHPG------VAQKVIGCIQKQKPFTPAPVSI-PLTARE-REILIHVSLGK 172 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ L IS T + +L + + + Sbjct: 173 SNREIARELFISEKTVKNHLTHIFHKIGVSDRTQ 206 >UniRef50_B2GLU0 Putative CriR family two-component response regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GLU0_KOCRD Length = 218 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 11/224 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ L +LI++D+ +A +H Y+ +PGF + +L +E +P L+L+D Y Sbjct: 1 MSD-LRVLIIDDDFHVAALHVGYVNAVPGFEALPPVHDLRAVAAAVEEHRPDLMLVDVYF 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G G+++L + D +AAS+ TV+ A R G YL+KP E L L Sbjct: 60 PQGSGLDVLRAV-----DVDAFVLSAASERATVAAAFRRGALAYLLKPFEPEVLKAKLRA 114 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTG-IDPLTLNAVRKLFKEPGVQHT 179 + + + L++ SQ ID A D+ P G T +AV + G T Sbjct: 115 YARYRRQLDAPGPLSQSAIDRARRAMTGS---DDAPAGTAASATESAVADAVADGGEV-T 170 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIY 223 VA+A+ ISR TA+RYL R + E+ +G GRP+ Y Sbjct: 171 VMDVARAVGISRATAQRYLSQMVQRGAVQLELRYGSRGRPEHRY 214 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 179 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 7/201 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + E+ E++++ AG+ + A ++ L++LD +P G Sbjct: 74 KILIVDDEPRIRELIREHLQYAG--YVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L E+ H V+ TA + + G DY++KP + L + R Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + + + + P + + L G+ + E + Q Sbjct: 192 MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQ 251 Query: 186 AL-----TISRTTARRYLEYC 201 + T +++ Sbjct: 252 KVWNYDYFGEDRTVDTHVKML 272 >UniRef50_Q0RQX5 C4-dicarboxylate two-component system response regulator n=13 Tax=Actinomycetales RepID=Q0RQX5_FRAAA Length = 233 Score = 179 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ LIV+ + LAE + IPGF+ + + + A+A + R P L+LLD LPD Sbjct: 4 EPIRTLIVDGDARLAEQEGGIVDQIPGFTVVGIVHSGAEALEFVSRGHPQLVLLDLLLPD 63 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + L D++ T+ASD+ TV A+ GV YL+KP++ L L RF Sbjct: 64 TTGVEVCRTLRSRGAALDIIAVTSASDLATVRAALSYGVAQYLVKPLSAATLRDRLHRFA 123 Query: 123 QRKHMLESI--DSASQKQIDEMFNAYARGE-PKDELPTGIDPLTLNAVRKLFK-EPGVQH 178 L + SQ ++D A P + P G+ TL++V + G Sbjct: 124 AAHRQLATATPHHLSQGEVDRALAALRPAVAPIADQPKGVSATTLDSVVAQLRARAGRPA 183 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +AE +A A+ +SR TARRYLE+ A L I +G+ GRP +Y Sbjct: 184 SAEDIAAAIGVSRATARRYLEHLAVHRLAIRSHRYGRCGRPGNLYR 229 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 179 bits (454), Expect = 9e-44, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 84/214 (39%), Gaps = 11/214 (5%) Query: 1 MT--APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT P+ +L+V+DE + + P + AG+ A + +P +IL+D Sbjct: 2 MTPQNPIRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIAQAKTLQPDVILMDI 61 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P G+ E+ + V+ T + E + EA++ G YL+K E Q++ Sbjct: 62 NMPQMDGVTATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSI 121 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + L+ QK + P+ E GI P + + K Sbjct: 122 QQAHKGY--LQLGPGLGQKLCQLLKTPVR---PQIEAFEGITPREQD----VLKLVATGA 172 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +++ L I+ T + ++ SR + + Sbjct: 173 SNREISETLHITEKTVKNHVSSILSRVGVQSRTQ 206 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 83/210 (39%), Gaps = 5/210 (2%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ +L+ +D +R P + A + A+A P ++LLD +P Sbjct: 85 DPIKVLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPK 144 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI + + ++ T + + + EA++ G YL+K I+ + + + Sbjct: 145 RTGIEACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVH 204 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + ++ S + K ++E + RG+ + ++P P ++ + Sbjct: 205 GGQSLISP--SMASKLLNEFASLIKRGDARHQVP---APKLTEREMEVLRLVAKGLNNRD 259 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ L IS T + ++ + + + + Sbjct: 260 IAKQLFISENTVKNHVRNILEKLQLHSRME 289 >UniRef50_D0L8F3 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L8F3_GORB4 Length = 233 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 8/224 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYL 60 + L +LIV+D++ +A +HA + + GF AG++A AR + L LLD YL Sbjct: 14 SGDLAVLIVDDDSRVAALHAAIVEAMRGFRVAATAGSIAGARAALADHPHVDLALLDVYL 73 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI+L+ +L P D A +D V A+R G YLIKP L + L Sbjct: 74 PDGSGIDLVGDL-----PCDCFVVGAETDAAAVRTAMRSGALAYLIKPFDDAELARRLAG 128 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + Q + +L++ + Q+ +D +A G + P T + +LF A Sbjct: 129 YAQYRRVLDA-EHVDQRAVDGALSALRFGTRPADRDDPGSP-TEKRILELFAAADGPLFA 186 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + V+ A+ ++ TARR+L + + + +G GRP++ Y Sbjct: 187 DDVSAAIGVAAPTARRHLANLVAAGKLSMTLRYGTTGRPRQEYR 230 >UniRef50_D1B6P1 Putative uncharacterized protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6P1_THEAS Length = 224 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 8/223 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYLPD 62 P LLI ED+ + ++ +++ + G S + + + + R + L+LLD YL Sbjct: 3 PYGLLIAEDDPSMVRLYKAFLQGVEGVSLLGVTPSGEELLRYFRRGGRAELLLLDIYLEG 62 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+++L EL DV+ T+ S TV EA+R GVFDYL+KP R G+ L Sbjct: 63 SNGVDILRELRGMGVDLDVIVVTSESSPRTVGEAMRLGVFDYLVKPFGGSRFGRALDDLV 122 Query: 123 Q-RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 R+ + SQ ++D++ ELP G+ TL + L G T + Sbjct: 123 AFRRRIDRVNSRMSQDELDKLLGGGEE-----ELPKGLHRSTLKGILSLLSCFGEA-TVD 176 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 +++ + +S+++ RRY++Y + + H GRP +Y Sbjct: 177 RLSEEMGLSKSSVRRYMDYLVREGEVELRLKHLGRGRPVNVYR 219 >UniRef50_A5WD77 Two component transcriptional regulator, LuxR family n=3 Tax=Moraxellaceae RepID=A5WD77_PSYWF Length = 219 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 89/211 (42%), Gaps = 11/211 (5%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T+P +L+V+D L A+ + P F + + +A + + + L++LD +P Sbjct: 9 TSPAKILLVDDHPMLRRGMADLLSLEPDFQVVADVSSGEEALSYLAQNQVDLVILDQNMP 68 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G++ ++ + + V+ T + + + A++ GV YL+K + E++ + + Sbjct: 69 GLSGLDTAEQIREQGHQAKVLMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVALDIRKA 128 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + ++ + R D++ + + L V K H+ + Sbjct: 129 LR-------GELVVSSRLAAVLAQALRTPNLDDIVSNLTSRELQVV----KMIAKGHSNK 177 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + L IS +T + ++++ ++ + + Sbjct: 178 MIGNELGISESTVKVHVKHILNKTNLRTRVD 208 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 6/205 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ P+ ++IVED+ + E + G + A + +A + +P ++L+D + Sbjct: 1 MSGPVRVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGARPEVVLVDVRM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI L+ L + H + T D E V +R G Y++K E L + + Sbjct: 61 PRMDGIQLIERLGREHPEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +L+ + K I E+ G+ + + + + Sbjct: 121 VHRGEAVLDG--PITLKVISELGRLSKGPAGPQPGSGGLSEREME----VLRLVASGASN 174 Query: 181 ETVAQALTISRTTARRYLEYCASRH 205 +A+AL I+ T + ++ + Sbjct: 175 REIARALYITEGTVKNHISSILRKL 199 >UniRef50_D0LAH6 Response regulator receiver n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAH6_GORB4 Length = 237 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 103/241 (42%), Gaps = 28/241 (11%) Query: 1 MTA--PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI------------ 46 M+ L +LIVEDE +A+ H E++R I GF I +A + Sbjct: 1 MSTQPELRVLIVEDEPLIAQAHREFLRRIGGFEVIAAVRTGQEALRVAGSAAASATPVDL 60 Query: 47 ---ERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFD 103 + P RG+++ L D++ TA ++ TV A+ GV Sbjct: 61 VLLDLGLPD----------ARGVDVASALSGLRPDPDIIAITAQRELATVRTAMSHGVLL 110 Query: 104 YLIKPIAYERLGQTLTRFRQRKHMLE-SIDSASQKQIDEMFNAYARGEPKDELPTGIDPL 162 YL+KP + + + ++R+ + L + D+ SQ+ +D + + + G P Sbjct: 111 YLLKPFTFAAFEEKIGQYRRYRQALSGAGDAVSQRDVDRAVSELRTTSTRRTVKKGAVPE 170 Query: 163 TLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRI 222 T +AV + ++ TA VA L SR TA RYLE A ++ +G GRPQ Sbjct: 171 TEDAVGRAVRDSTGGLTASDVAGLLGSSRVTAWRYLERLADDGVLDRVTEYGNTGRPQVR 230 Query: 223 Y 223 Y Sbjct: 231 Y 231 >UniRef50_A4J6C2 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=A4J6C2_DESRM Length = 218 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 81/204 (39%), Gaps = 7/204 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + LLI +D + E + + P S + N QA + ++L+D + Sbjct: 1 MNTSIKLLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI ++ + + ++ T E + E ++ G+ Y++K I ++L +T+ Sbjct: 61 PIMNGIEACRQIKKLNPNIGIIALTIHDQDEYLFELIKYGISGYVLKDIHPDQLIKTILG 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 Q + + +A + + R D LT + ++ K+ + Sbjct: 121 VAQGESFIPPSLTA------RVLAEFTRLSSGDYSEKKHLNLTEREI-EVLKQVAKGQSN 173 Query: 181 ETVAQALTISRTTARRYLEYCASR 204 + +A AL IS T + +L + Sbjct: 174 KAIANALYISEKTVKNHLTNIFQK 197 >UniRef50_A5URU4 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexi (class) RepID=A5URU4_ROSS1 Length = 242 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 82/214 (38%), Gaps = 3/214 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +LI++D + + + A N +A + ER P ++L+D L Sbjct: 1 MEQRIRVLIIDDHPLFRQGIRWSLEEAGDMEVVGEAENGQEAIKLAERLVPDVVLVDINL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ + + + ++ + D + + +A++ G Y K + L + + Sbjct: 61 PGLNGLEVARVIKRREPRIGLIVISVYEDDDQLFQAIKVGAAAYSSKDVHPRDLVRMIRE 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTG--IDPLTLNAVRKLFKEPGVQH 178 + K+++ A + + + ++ T PLT + ++ Sbjct: 121 VARGKYLINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREI-EILDCIARGL 179 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + +A L+IS T + ++ S+ + + Sbjct: 180 SNKEIASQLSISGQTVKNHITSILSKLQVNDRTM 213 >UniRef50_UPI000050F8A6 two component transcriptional regulator, LuxR family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F8A6 Length = 222 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 15/219 (6%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + ++I +DE+ + + I A N A+A + P LIL+D +P Sbjct: 1 MSIRVIIADDESLMRSGLRLLLGAADDIDIIAEAANGAEAIELARELSPDLILMDIRMPV 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ L+ +V+ TA E V +A+R G Y++K E L + Sbjct: 61 MDGLEATRALMAQTLHPEVLILTAFGTDEFVLQALRSGAAGYILKDTPPEDLIHAVRAAA 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEP-------KDELPTGIDPLT--LNAVRKLFKE 173 + S ++ + + +P G DPL R++ + Sbjct: 121 ------NGTRTLSPSAVESLLGRDTTSATGVAGASNWNSVPIGPDPLEPLTTREREIAEA 174 Query: 174 PGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 T VA+AL +S T + +L + + + Sbjct: 175 VAQGMTNAQVARALFVSTATVKTHLARIFYKLDVSTRVQ 213 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 82/216 (37%), Gaps = 16/216 (7%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI----ERFKPGLILL 56 M+ + ++IV+D + Y+ PGF I AG+ +A ++ +P +IL+ Sbjct: 10 MSK-IKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDIILM 68 Query: 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQ 116 D +P G E+ +V T+ + + V +AV G Y++K ++ E L Sbjct: 69 DLMMPGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIY 128 Query: 117 TLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 L + ++ ++ + R +G+ +++ Sbjct: 129 ALQGAYRGMPVMTG-------EVAQALTRGLRQRTVQGDDSGMTERE----KEVLLLIAE 177 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + +A+ L IS T + ++ + + Sbjct: 178 GKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQ 213 >UniRef50_A6TVR4 Two component transcriptional regulator, LuxR family n=5 Tax=Firmicutes RepID=A6TVR4_ALKMQ Length = 208 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 82/208 (39%), Gaps = 10/208 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+D+ + + I F+ + A N +A + + P LIL+D +P Sbjct: 1 MKVLIVDDDALIRDSLKILIDLEADFTVVGTASNGQEAFEFCKEYAPDLILMDIRMPIMD 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ + ++ ++ T D + + EA++ G Y++K + + + ++L Sbjct: 61 GVLATKMIKESFGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIESLRTV--- 117 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +I + + + E + +D ++ K G + ++ Sbjct: 118 ----SKGNVVFETEIASVLTSMLKEEKEKHH---LDLQLTEREHEIIKWVGEGLSNREIS 170 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 AL +S T R Y+ + + Sbjct: 171 AALYLSEGTVRNYVTQLLEKLNVRDRTQ 198 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LIV+D E + I P + A N A M+ +P ++L+D +P Sbjct: 26 RRIRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAELQPDVVLMDINMPG 85 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI +VQ + V+ T D E V A+R G YL+K E L + + Sbjct: 86 MDGIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVKNSKPEELLRAIHVAA 145 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + ++ + + + G D + + + + Sbjct: 146 EGGATIDP-------DLAPILMREYQRLLTKAPTRGQDLS--DRELTMLRLLAQGYNNRQ 196 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAE-------IVHGKVGRPQ 220 +A AL ++ +T + L + + I HG V RP Sbjct: 197 IADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLVPRPT 241 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 9/211 (4%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MT + +LI ED + + I F + A N A M + KP LILLD Sbjct: 1 MTQSTIKILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLS 60 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P G+ + +L + ++ T + + + A++ G YL+K + L + Sbjct: 61 MPKMNGLATMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIR 120 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 K L S S + I + N R + + +++F+ +T Sbjct: 121 AIMDGKAYLSSD--LSGQLIHSVINPDTRE--AADPLASLTQRE----KEVFQLVAEGNT 172 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAE 210 + +A L IS T ++ + + + Sbjct: 173 NQQIADLLFISPKTVDKHRTNLMKKLDLHSA 203 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 8/212 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + +L+V+D + ++ + A N +A M P +IL+D + Sbjct: 1 MSDVIKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI + E+ PG ++ T+ + + + A++ G YL+K + L + + R Sbjct: 61 PVMDGIQAIREIRDRKLPGRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPDELLEAIRR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + L ++K + E+ E P + P L+ K + Sbjct: 121 VHRGEPSLAPD--IARKVLSELSQPGEDSETPTPDP--LTPRELDT----LKLVAKGKSN 172 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ + +S T R ++ S+ + + Sbjct: 173 KAIAEEMFVSEATVRTHMTSILSKLHLANRVE 204 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 82/216 (37%), Gaps = 13/216 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T P+TLL+V+D + + E + + A + +A + + P +IL+D +P Sbjct: 12 TRPITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMP 71 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI + ++ T+ D V + G YL+K + + L + Sbjct: 72 GMNGIEATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAV 131 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + L + ++K ++ P+D + P L + + T + Sbjct: 132 AAGESALHP--AVARKVLERFSTHQTPTPPEDA----LSPRELE----VLRVAATGRTNK 181 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV---HG 214 +A+ L IS T + +L S+ + + +G Sbjct: 182 EIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYG 217 >UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNS9_9CLOT Length = 273 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 89/211 (42%), Gaps = 4/211 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L ++IVEDE + + + + G + A + A+ I R +P ++L D +P Sbjct: 3 LKVVIVEDEEIIRKGLTFALNWLDMGCIIVGTAKDGAEGLETIRREQPDIVLTDIKMPKM 62 Query: 64 RGINLLH-ELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ ++ + + + T+ S+ E +A+ GV DYL+KP+ + L ++L + R Sbjct: 63 NGLKMIETAIKDQQFYS--LVLTSYSEFELARQAIHMGVTDYLLKPVDEDELKESLDKIR 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 Q+ + + D + Y + D +DP + + + + Sbjct: 121 QQIAYASKYEKIEKISQDRLLTVYDEWKIFDSAKNSMDPYVKRTYEFVKQHYKEKVSINQ 180 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVH 213 VA++L +S + R L+ + + + Sbjct: 181 VAESLGVSTSYLSRKLKAGLNTTFVDLLNQY 211 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 79/208 (37%), Gaps = 7/208 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +++V+D + E + P + A + +A + P ++L+D +P Sbjct: 2 INIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRMT 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + + VV T + V EA+R GV +L+K + ++L + R Sbjct: 62 GLEALRAMRREAPERRVVLLTTFDEDSVVVEALRAGVKGFLLKDVTRDQLADAIRRVANG 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + +L + +++ F + P ELP G+ L + + + +A Sbjct: 122 ETLLPPGVA---ERVQRGFTEVPQEFPHAELPEGLTRRELE----VMRLIARGLSNREIA 174 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 L + T + ++ + Sbjct: 175 TVLGTAEGTVKNQTSNILAKLGVRDRTR 202 >UniRef50_B1W048 Putative two-component system response regulator n=13 Tax=Streptomyces RepID=B1W048_STRGG Length = 224 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VED+ A+ H Y+ + GF+ +A A A +ER L+LLD YLPDG Sbjct: 2 IRVLVVEDDPVAADAHQMYVERVEGFTVTAVAHTRAAAVRALERTPVDLLLLDLYLPDGH 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ LL L + + DV+ T+A D+ V E V GV Y++KP Y L L R+ + Sbjct: 62 GLGLLRSLRASGHGADVIAVTSARDLAVVREGVSLGVVQYVLKPFTYPTLRDRLVRYAEF 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + +++ Q+++D A R LP G+ TL AV + KE TA Sbjct: 122 RGA--AGEASGQEEVDRALGAL-RVAHPAALPKGLSGPTLEAVTGVLKESPEGVTAAAAG 178 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + L ISR TARRYLE+ + +G+VGRP+ Y Sbjct: 179 ERLGISRITARRYLEHLVTVGSAARRPHYGQVGRPELHYR 218 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 5/209 (2%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 ++P+ LLIV+D++ + + + P + A N A ++ +P ++L+D +P Sbjct: 6 SSPIRLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDIRMP 65 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + G ++Q+ V+ + D ++ A+R G YL+K + L + RF Sbjct: 66 EMDGRTATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKGYLLKDMPSSELADAI-RF 124 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + + E +A A P+ I +++ GV T Sbjct: 125 GHSGYTQFGPGLFDKLLVTEAASASANQNSASSKPSEITARE----QEVLCLIGVGATNR 180 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAE 210 +AQ L I+ T + ++ SR + Sbjct: 181 EIAQQLYITEGTVKTHVTSILSRLNLKNR 209 >UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR family n=16 Tax=Proteobacteria RepID=B2JVJ8_BURP8 Length = 219 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 10/212 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M T+L+++D + A+ I+ P F + A + + R KP ++L+D + Sbjct: 1 MEPVNTVLLIDDHALFRKGVAQLIQMNPAFRVVGEASSGRVGVDLAVRLKPDVVLIDLNM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD GI L + Q + T + + V A+R G YL+K + E L L + Sbjct: 61 PDMNGIETLEMMRQHGVDARFLMLTVSDNERDVVAALRAGASGYLLKDMEPEELCLNLQK 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 Q +L + ++F+A + G+P + + + L Sbjct: 121 ALQGTAVLSEAVTG------KLFHALSAGQPLPANQSNLSVREQEVLDYLV----EGMCN 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ L IS T + ++++ + + + + Sbjct: 171 KEIARKLDISVGTVKVHVKHLLHKLDLHSRVE 202 >UniRef50_C6D0G6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=C6D0G6_PAESJ Length = 225 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 81/210 (38%), Gaps = 1/210 (0%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L+ +D + + + ++ P F + A N +A +P ++L+D +P Sbjct: 1 MKIKILLADDHQIVLKGISFFLAMQPDFELVGEAHNGKEAVEKAGELQPDIVLMDLNMPI 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI + + H V+ T+ +D + A++ G Y++K + ++L + + Sbjct: 61 MDGIEASALIKEQHPHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAIRSAY 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + L S + E ++ LT + ++ + + + Sbjct: 121 KGNIQLHPDISRALLSRPEPEPRPEPVIQHSNRDKSLEALTPREL-EVLELLTKGLSNKD 179 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +AQ L ++ T + ++ S+ + Sbjct: 180 IAQTLIVAEKTVKTHVSSILSKLDLSDRTQ 209 >UniRef50_C3PHX2 Two-component system response regulator n=3 Tax=Corynebacterium RepID=C3PHX2_CORA7 Length = 215 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 5/202 (2%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +++++V+DE L + + A N + + +P ++L+D +P Sbjct: 2 ISVVLVDDEQALRRGIRFILEGAADIEVVAEASNGREGVARVLDLQPDVVLMDIRMPVMD 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI +L + VV TA E + +A+ G +L+K I E L + Sbjct: 62 GIEAAGKLRASAPDIPVVMLTAFDTDEFIVDALHAGAMGFLLKTIEPEGLVLAVRAAATG 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELP-TGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +L + + A A E + P G+ ++ + + + Sbjct: 122 QQLLSPKALKNLLALKRPEPAPAEPEALEARPLEGLSQRE----NEVAQLVAQGLDNQEI 177 Query: 184 AQALTISRTTARRYLEYCASRH 205 A L +S TT + ++++ + Sbjct: 178 AGQLYVSVTTVKTHIKHILDKL 199 >UniRef50_UPI0001789139 two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=UPI0001789139 Length = 216 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 80/211 (37%), Gaps = 10/211 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDG 63 +++LI +D+ + E + P +A + +A ++ ++L+D +P Sbjct: 2 ISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALSLLMDGLHADVVLMDIRMPVC 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + + + V+ T D + + EA+R G YL+K I +R+ Q + Sbjct: 62 DGVEGTRRIRERYPDVRVLMLTTFDDDDYIVEALRNGASGYLLKNIPPDRIIQGIKTVHD 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPT--GIDPLTLNAVRKLFKEPGVQHTAE 181 ++ + +++ M + P+ G+ P V + + + Sbjct: 122 GNMLIHPDIA---RKLTGMLRPTPQPVPRSAELEQFGLTPAEKRVVALI----AEGLSNK 174 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A L +S T + Y+ + + Sbjct: 175 EIAAQLYLSEGTVKNYVTEILGKLNLRDRTQ 205 >UniRef50_C0GJ72 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ72_9FIRM Length = 212 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 12/212 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +++V+D + + + + A L A + P +ILLD L Sbjct: 1 MKKNIKVMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGAVAVCAEVAPDVILLDFKL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PDG GI L + ++ TA +D V+E ++ G YL+K + E L T+ Sbjct: 61 PDGDGIIGCGNLKRQFPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEELINTIQA 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + Q +D K + P LT V ++ V Sbjct: 121 VHKG-----------QSVLDPSVTEILFDNIKSQQPKKEHNLTPKEV-QILDMISVGKAN 168 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ + IS T R Y+ + + Sbjct: 169 KEIAEIMKISDKTVRNYVSNILQKLNVSNRTE 200 >UniRef50_D1C6S1 Two component transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S1_SPHTD Length = 223 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 8/210 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ ++LL+V+D E A + + P F+ + A + +A P ++L+D L Sbjct: 1 MSQ-ISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDL 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI + + VV T D E + ++++ G YLIK I L L Sbjct: 60 PGIDGIEATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRG 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + + +A I E F R E G+ P ++ + ++ + Sbjct: 120 LARGEAAISRRMAAR---ILEEFARLERQAEILEPDGGLSPRE----VEVLELVALRLSN 172 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAE 210 + +A L+IS T + +L+ ++ + + Sbjct: 173 KEIAARLSISEHTVKNHLKNILAKLQLSSR 202 >UniRef50_C0ZBD9 Two-component response regulator n=2 Tax=Paenibacillaceae RepID=C0ZBD9_BREBN Length = 215 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 11/210 (5%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LI +D + P F I A N +A ++ + +P L+L+D +P Sbjct: 3 AYRVLIADDHPMARMAIRSLLDPDPSFEVIGEAQNGEEAFLLCGQIQPDLVLMDINMPKW 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ E+ +A+ VV + + D+ + A++ G YL+K + + L Sbjct: 63 SGLEATREVKKAYPHIKVVILSVSDDVADLITAIQFGAQGYLLKNLEPDDWINYL----- 117 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDE-LPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +L +++ + + + E DE +P + P V + G T Sbjct: 118 -HALLGEDSELTREMATRLMYRFRQEEATDEMVPAVLTPREREIVMYV----GAGKTNRE 172 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +++AL I+ T + +L+ + + + Sbjct: 173 ISEALIIAENTVKNHLKNILEKLQLANRVQ 202 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 2/131 (1%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE + E + + N A + R +P +IL D +P Sbjct: 1 MKILIVDDEPIVREGLKNNVSWQELDLRVVGCEANGKSALDVFNREQPDIILTDIRMPFM 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-R 122 G+ L E+ + V+ +A D + +A+R G FDY++KPI + L +T+ R Sbjct: 61 DGLELTREVKKLDPLVVVILLSAYDDFKYAQQAIRLGAFDYILKPIDIDTLKETVRRAVL 120 Query: 123 QRKHMLESIDS 133 +RK +L+ Sbjct: 121 KRKELLDKKKE 131 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 10/211 (4%) Query: 1 MTAPL--TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 M+ P+ ++++V+DE + E+ + H GF + A + ++A +IE+ +P LI+LD Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASL-HFAGFE-VNTAASGSEAIEVIEKTQPDLIVLDV 63 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LPD G + + Q V++ TA D + + G DY+ KP + E + + Sbjct: 64 MLPDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 123 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 +R D + D N + + P + P +R L G Sbjct: 124 RAILRRTQEQVEDDPII-RVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVL 182 Query: 179 TAETVAQAL-----TISRTTARRYLEYCASR 204 + + + Y+ Y + Sbjct: 183 SKAQILDHVWQYDWGGDAAIVESYISYLRKK 213 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 P+ +LIV+D++ L + + +I A N +A I LILLD LP Sbjct: 3 PGPMNILIVDDDSELLDHLRRALERK--HYRIETAENGEKALDKIFEITYDLILLDIMLP 60 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+++L + QA V+ TA D+E + + G DYL KP + L + Sbjct: 61 LMDGLSVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRAL 120 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 +R ++I +A N +R D P + + + L G + Sbjct: 121 LRRDGKRDTILTAGP----LSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRF 176 Query: 182 TVAQAL 187 +A+ + Sbjct: 177 NMAEHV 182 >UniRef50_Q1AST2 Two component transcriptional regulator, LuxR family n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AST2_RUBXD Length = 232 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 7/209 (3%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P+ L++V+D + + P F + A + +A + R +P ++++D +P Sbjct: 10 PVRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGV 69 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + + H V+ TA D E + EA++ G Y++K R+ L R Sbjct: 70 DGLEATRRIKEEHPQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISALRR--- 126 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +L +Q+ + AR P + LT R++ T + Sbjct: 127 ---LLSGESPLNQELAARLIQDLARRPGGGGNPPPAEELTARE-REVLVLMARGRTNPEI 182 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIV 212 A+ L ISR TA+ +++ + + Sbjct: 183 ARELVISRGTAKSHVQNIIRKLGVSDRTQ 211 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 3/185 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +L+V+DE + ++ ++ Q A N +A +++R L+LLD +P+ Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKEN--YQTTTASNGQEALDLMQRDAFHLVLLDVMMPE 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + + ++ TA SD ++ G DY+ KP + L + Sbjct: 62 MDGLTACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 +R H SA+ + +R P + + + + + E Sbjct: 121 RRSHRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQ 180 Query: 183 VAQAL 187 + + Sbjct: 181 LLDQI 185 >UniRef50_B5CZ21 Sensor protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CZ21_9BACE Length = 1393 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 12/204 (5%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 ++LIVEDE + + + ++L N +A +I P L+L D +P+ Sbjct: 1130 KKHSILIVEDEDEIRNYL---LTELGSHFRVLSCSNGKEALDLIMHHMPDLVLSDIMMPE 1186 Query: 63 GRGINLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 GI LL +L Q V+ TA + + E + G Y+ KP + L T+ Sbjct: 1187 VNGITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIEN 1246 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + +L + S Q+Q D + + L + K P A Sbjct: 1247 LIKNREILRNNFSGKQEQNDNI-----EVAQPQSADEKLMQKVLKVINKNLNNPD--LNA 1299 Query: 181 ETVAQALTISRTTARRYLEYCASR 204 E +A + ISR R L+ ++ Sbjct: 1300 EMIAAEVGISRVHLYRKLKELTNQ 1323 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 8/204 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + M Y+ G+ I A N +A + KP LI+LD +P+ G Sbjct: 4 KILIVDDEPKIVTMVKSYLLK-EGYEVI-TAFNGREALNSFYKEKPDLIVLDWMMPEMSG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I +L E+ + ++ TA ++ GV DY++KP + L + +R Sbjct: 62 IEVLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + D + R P + P + K PG ++ + + Sbjct: 121 EAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLE 180 Query: 186 -ALTIS----RTTARRYLEYCASR 204 A+ + T ++ + Sbjct: 181 YAIGEAYEGYERTIDTHISNLRKK 204 >UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0L7_PELTS Length = 223 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 91/212 (42%), Gaps = 8/212 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 +T+ + LL+V+D+ + + + A N +A I R KP +IL+D + Sbjct: 5 LTSEIQLLLVDDDPLVRRSLRMLFELH-DINVVGEASNGEEALKAIARLKPTMILMDVNM 63 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI L + + V+ T + E V +A+R G Y++K E+L + + Sbjct: 64 PKMDGIQALKAIKTNYPDIQVIILTVHNQHEKVVQAIRDGCSAYVLKDSPPEQLIEVVES 123 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + ++ +++ + +E+ +G P+ + P + LTL +++ + + Sbjct: 124 VAEGRYFVDTSIA------NELLVNLVQGTPRRQHPKNLPLLTLRE-KEVLQLIVNGLSN 176 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A L I+ T + ++ + + Sbjct: 177 KEIAGKLNITLRTVKAHVSSILMKLNVNDRTQ 208 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 169 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 8/204 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+ ++E+ Y+ GF + A + A + E P L++LD LP G Sbjct: 57 RVLVVDDDALVSEVVDRYL-RNAGFD-VDRAADGPTALRVAETTPPDLVVLDLMLPGLDG 114 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I + L H P V+ TA +D + G DY+ KP + L + +R Sbjct: 115 IEVFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA 173 Query: 126 -HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + ++ + + +A AR + +P G+ + + L + PG T + Sbjct: 174 NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELL 233 Query: 185 QAL-TIS---RTTARRYLEYCASR 204 + + S +T ++ + Sbjct: 234 EHVWGWSYGDPSTVTVHIRRLREK 257 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 169 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 7/212 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +P+ +LI +DE + + P + + A + A R +P ++L+D +P Sbjct: 24 SPIRVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPV 83 Query: 63 GRGINLLHELVQA--HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 G+ + ++ T D E V EA+R G +++K E L + Sbjct: 84 MNGLEATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRT 143 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +L + + P TG+ + R + + ++ Sbjct: 144 VAAGDALLAPGVTRR-----LIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSN 198 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +AQAL +S +T + ++ + ++ Sbjct: 199 AEIAQALYVSVSTVKTHVGHLLAKLAARDRAQ 230 >UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 Tax=Synechococcus RepID=Q2JML6_SYNJB Length = 229 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 12/208 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+ ++ + ++ ++ + + + + +P +++ D +P+ G Sbjct: 3 RVLVVDDDPLSLKVLSRHLTQHG--YRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60 Query: 66 INLLHELVQA--HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 +L Q +F ++ +++ + G DY+IKP L + + Sbjct: 61 FEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIE 120 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRK-LFKEPGVQHTAET 182 R +Q +I + ++ +P+ + L L + +F+E T + Sbjct: 121 RSRR-------TQSEILRLIQQQSQPKPEADPRPTPPELPLTPAEERVFREVIRGFTNKQ 173 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAE 210 + + L IS T + +L S+ + Sbjct: 174 IGEKLFISPRTVQTHLTNILSKLSLENR 201 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 9/198 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + ++ + I F A + +A + + P +++LD +P G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVV--TASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + E+ + ++ TA D+ + G DY++KP + + L + +R Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132 Query: 126 HMLESIDSASQKQIDEM----FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + I + R KD + + + + L G + Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRA 192 Query: 182 TVAQALTISRTTARRYLE 199 + Q + T R+++ Sbjct: 193 DILQEV--WGYTPERHVD 208 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 73/196 (37%), Gaps = 1/196 (0%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LLI +DE + G + + N +A+ ++ L++ D +P Sbjct: 1 MNLLIADDEAVIRRGLLSLDWKSIGITDVYSVANGVEAKELLLSTSIDLVIFDIRMPGFS 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L + + VV + S+ E A+R GV++YL+KP++ L +T+ R Sbjct: 61 GLELAQMVKERSMDVAVVLLSGFSEFEYARSAMRYGVYEYLLKPVSPNELMETMHNVMHR 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 ++ DE + + L + + + + + +A Sbjct: 121 LEQKRFEQKLLSQK-DEFGEKHDAVSQVNSLFVQSSGAIKSILTDIAQNYEQNISLADLA 179 Query: 185 QALTISRTTARRYLEY 200 + S + R ++ Sbjct: 180 EKYHFSESYISRKIKK 195 >UniRef50_Q73CG3 DNA-binding response regulator, LuxR family n=10 Tax=Firmicutes RepID=Q73CG3_BACC1 Length = 214 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 9/210 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +LIV+D + E I F I A N +A IE+ KP +IL+D +P Sbjct: 1 MKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFIEKKKPDVILMDLNMPK 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + L + ++ T ++ E + + + G YL+K E L +TL Sbjct: 61 MSGLETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAI 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + Q I E Y R E + + LT + + K + + Sbjct: 121 R-------GEILLQPNIMEKIVNYKRKEIHANVVEE-NNLTEKEL-FVLKAIARGNKNKD 171 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A + I+ T + YL ++ + + Sbjct: 172 IAFDMGIAERTVKAYLTNIYNKLGVNSRSE 201 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 16/203 (7%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LIV+D+ + + I A +A +I++F P +++ D +P+ Sbjct: 2 YKILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELIKKFTPDIVITDIRMPNM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI L+ + ++ TA + E A++ G FD+L+KP E + + + Sbjct: 62 DGIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKPTKVEDIINVVQKAIA 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +++ ++I+ + ++LP + N + ++ + + Sbjct: 122 EINKEKTMIE-ELEKINRLLQ--------EKLPILRENFLFNVIFEMITNE------DEI 166 Query: 184 AQALTISRTTARRYLEYCASRHL 206 Q + + + ++ A + Sbjct: 167 VQMAEVYKIDIKNFVMILAECGI 189 >UniRef50_Q3AD13 Response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD13_CARHZ Length = 205 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 17/220 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LI++D+ + E I + + + A N A R KP ++L+D ++P Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMG--WEAIKAENGAIGIEKFVREKPDMVLVDYHMPALD 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G++ + + + ++ T + + + G D+ +KPI L L + Sbjct: 59 GLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDLIARLKVHARM 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + S + Q L GI+ T N + + KE T E + Sbjct: 119 IEINRSQEKKDQDGF---------------LAKGINKKTFNLIVEYLKEQKEPQTIEEIT 163 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQRIYH 224 + + ++ T RYL Y + ++ E +G++GRP+ Y Sbjct: 164 EGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKNKYK 203 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 11/208 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D + ++ + A + + E +P +IL+D +P Sbjct: 8 VRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTD 67 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L L + P V+ T+ ++ TV A+R G Y+ K I + L + Sbjct: 68 GIEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAG 127 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +L Q ++ P + R++ + +A Sbjct: 128 HVLL-------QPEVAVALLTQDDQGPSSSRGGALTDRE----REVLSHIADGRSNREIA 176 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 +AL +S T + ++ + + Sbjct: 177 RALVLSEKTVKTHVSNILMKLDVADRTQ 204 >UniRef50_D2Q2Q8 Two component transcriptional regulator, LuxR family n=3 Tax=Actinomycetales RepID=D2Q2Q8_9ACTO Length = 216 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 9/208 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ + I + + A + +A + +P ++L+D +P Sbjct: 2 IRVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALALAREHQPDVVLMDLQMPVMG 61 Query: 65 GINLLHELVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + VV T V +AV+ G YL+K +A + L + Sbjct: 62 GVETTAAIRADPLLKDTPVVVLTTFDHDADVVDAVQAGASGYLLKDLAADELRGAIRTA- 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + K M + +R + + LT + + G + E Sbjct: 121 -----VTGGAPIAPKVAKLMMHRISRMPSRKVQEETLAGLTAREL-DILAHVGRGLSNEE 174 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAE 210 + QAL +S TAR Y+ ++ + Sbjct: 175 IGQALFLSPETARTYVSRLLAKLGVRDR 202 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 80/204 (39%), Gaps = 6/204 (2%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +L+ ED T + + + P + A N +A M+E P ++L+D +P+ Sbjct: 3 KIKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPEL 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G++ +L + + ++ + S E + E +R G YLIK A L + + Sbjct: 63 NGMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHA 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 L S + N + + P G+D L+ R++ + H + Sbjct: 123 GDCFLSPSISKK-----VIKNYVQQKQGLSLEPRGLDLLSARE-REVLQLIAEGHANREI 176 Query: 184 AQALTISRTTARRYLEYCASRHLI 207 A L IS T + + + + Sbjct: 177 AGHLYISPKTVEAHRNHIQKKLGL 200 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 83/214 (38%), Gaps = 4/214 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T +++++D E + F + + +A ++ER+KP ++++D +P Sbjct: 34 TMKTRIVLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDVVIMDINMP 93 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ +L++A+ V+ + D V A++ G YL+K + + L + + Sbjct: 94 HVNGVEATRQLIEAYPDTKVIILSIHDDESYVMHALQTGAMGYLLKEMDADALIEAVRVV 153 Query: 122 RQ---RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + H + + + + + + ++ LT ++ + Sbjct: 154 AEGGSYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLLT-RRECEVLQLLADGK 212 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + +A AL IS T + ++ + + Sbjct: 213 SNKGIADALYISEKTVKNHVSNILQKLNVNDRTQ 246 >UniRef50_B2JVP2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JVP2_BURP8 Length = 215 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 10/209 (4%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 P T+L+++D + A+ I+ P F A + M R KP ++L+D +P Sbjct: 3 PHTVLLIDDHALFRKGVAQLIQMNPSFEVTGEATSGQDGIEMAVRLKPDVVLIDLNMPRM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI L + QA + T + + V A+R G YL+K + E L +L + + Sbjct: 63 NGIETLEGMRQAGVDARFIMLTVSDNERDVVAALRAGAHGYLLKDMDPEDLCVSLQKALK 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 +L + S + +A + G+ + L L + + Sbjct: 123 GTAVLSESVTGS------LVHALSGGQRIPAAQNDLTARELEVFDYLV----AGLCNKAI 172 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIV 212 A+ L IS T + ++++ + + + + Sbjct: 173 ARKLDISVGTVKVHVKHVLRKLDLHSRLE 201 >UniRef50_A7NP18 Two component transcriptional regulator, LuxR family n=12 Tax=Bacteria RepID=A7NP18_ROSCS Length = 222 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 11/211 (5%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T P+ +L+ +D + E + GF + A + +P ++LLD +P Sbjct: 3 TMPIRILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAALRPDIVLLDIQMP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + G+ + +L Q H V+ T + + EA++ G YL+K + L + R Sbjct: 63 EIDGVAVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELIDVIERV 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + L+ + R D+ + R + H Sbjct: 123 HRGEAALDPTVTLR-------VFDEFRRLSIDQDAEQLTERE----RDILTLLAEGHDNR 171 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 T+AQ L +S T L + + Sbjct: 172 TIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQ 202 >UniRef50_C0GF31 Two component transcriptional regulator, LuxR family n=3 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GF31_9FIRM Length = 218 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 79/200 (39%), Gaps = 10/200 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++IV+D + I FS I AG+ +A + P ++++D +P Sbjct: 2 VRVMIVDDHAVVRVGLKSLIELHGDFSVIAEAGSGEEAVEVARETVPDVVVMDVRMPGMS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ +V+A V+ T+ +D E + A+ G Y++K +L + + + + Sbjct: 62 GIDACRAIVEAVPDTKVIMLTSYADDEAIYSAILAGASGYVLKQTDNAKLLEAIEQAARN 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + +L+ + ++ + + +K+ + +A Sbjct: 122 ESLLDPHVTG------KVLKRMKEIAAATQYEAKLSETE----KKILVLIAEGKRNKEIA 171 Query: 185 QALTISRTTARRYLEYCASR 204 + L ++ T R Y+ S+ Sbjct: 172 EELFLAEKTVRNYVSKIFSK 191 >UniRef50_UPI00016939E4 two-component response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016939E4 Length = 321 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 10/217 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T+L++ED+ + E++ ++I + GF I A ++ ++ +P LI LD Y+P Sbjct: 10 YTVLLIEDDPMVQEVNRQFIERVEGFRVIGTAATGSEGLRLVRELEPDLIFLDIYMPSQD 69 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G L +L P DV+ TAA D T+ + +R G+ DY+IKP +ER+ L +FR Sbjct: 70 GTEALRKLRAEALPVDVIVVTAAKDAPTIRQMIRKGIRDYIIKPFKFERVRDALEQFRAH 129 Query: 125 KHMLESIDSASQKQIDEMFNAYAR--GEPKDELPTGIDPLTLNAVRK--LFKEPGVQHTA 180 L + + SQ ++DE+ + GE + G+ + R+ + E G+ Sbjct: 130 HTALMAEGTLSQVELDEILHRTGERSGEYSESGAEGLACWPQDYFRRGKSYDEAGLYFEG 189 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVG 217 + + + R+ + + A +V GK G Sbjct: 190 QDIQETAG------RKSQDISSDSSRDKAALVEGKPG 220 Score = 84.3 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 38/81 (46%) Query: 144 NAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCAS 203 + LP G++P T+ + ++ +AE VA + I+R TARRYL+Y Sbjct: 234 QPLEKFPDLSNLPKGLNPATMRQIIYFVRQQKKALSAEEVADGVGIARVTARRYLDYLEK 293 Query: 204 RHLIIAEIVHGKVGRPQRIYH 224 + I +G +GRP Y Sbjct: 294 SRQVRLVISYGGIGRPINRYE 314 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 80/208 (38%), Gaps = 13/208 (6%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIV+DE + + Y+ + A N +A +++ K +IL+D +P G Sbjct: 5 TVLIVDDEEDMRFLVGMYLENANFSYL--EAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR- 124 L + + ++F TA D + ++ G DY++KP + L + +R Sbjct: 63 FTLCARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRA 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 H + + S + + + R D P + + + L K G + E + Sbjct: 122 YHNKQKNEDLSFGPL--VIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 185 QAL------TISRTTARRYLEYCASRHL 206 + +R T +++ + Sbjct: 180 AQVWGYDYTGNAR-TVDTHIKTLRMKLK 206 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 9/199 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 ++PL LLIV+D + + GF + A + AQA + P ++L+D +P Sbjct: 9 SSPLRLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMP 68 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ + L V+ T V A+ G YL+K E L + + Sbjct: 69 TMGGVEAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAA 128 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + +L + +Q+ + + A P + + L + + T Sbjct: 129 AAGQPVLAP--TVAQRLMTRVQTPLAEPAPPGDA---LTERELE----VLRLVASGTTNR 179 Query: 182 TVAQALTISRTTARRYLEY 200 A+ L IS T + +L + Sbjct: 180 ETARKLFISEATVKTHLLH 198 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 10/208 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + ++ + GF + A +A +P L++LD LPD G Sbjct: 22 RVLVVDDEPNIVDLVRMAL-RFHGFDVV-TAATGQEALTRAAADQPDLLILDVMLPDADG 79 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L VV+ TA + G DY+ KP A E L + +R Sbjct: 80 FEVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRT 139 Query: 126 HMLESIDSASQKQI---DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 S + + D + A + + P + P + +R P + Sbjct: 140 RRPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQ 199 Query: 183 VAQAL-----TISRTTARRYLEYCASRH 205 + A+ T +Y+ Y + Sbjct: 200 ILAAVWDRDFDGEPTVVDQYVSYLRRKL 227 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 8/222 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T P+ +L+V+DE ++++ + GF + A N A + E ++P +LD +P Sbjct: 27 TQPVKVLVVDDEDNISDLIKVSL-KFQGFD-VETADNGQTALEIAETYRPDAFILDVMMP 84 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G LL++L +A + +F TA +E + G DY+ KP + E + L Sbjct: 85 GMDGFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVI 144 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 +R +S +S+ D + K + P +R L V + Sbjct: 145 LRRVAKDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKS 204 Query: 182 TVAQAL-----TISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 + + Y+ Y + + E R Sbjct: 205 KILDHVWNYDFGGDGNVVESYVSYLRRK-IDTKEPRLIHTVR 245 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 73/191 (38%), Gaps = 8/191 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + +L+ +D+ + E+ Y I A + +A M+E+ +P +++LD + Sbjct: 30 MST-MKVLVADDDPNVREIIRLYFEKQQ-IELIA-ATDGREALEMMEKEQPDVVILDVMM 86 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G E+ + ++ TA + + G DY+ KP + + + Sbjct: 87 PQLDGFEACREIRKKW-DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRA 145 Query: 121 FRQRKHMLESID---SASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 +R ++ + +++ + R P + + +L K PG Sbjct: 146 IMRRLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGS 205 Query: 177 QHTAETVAQAL 187 + E + + + Sbjct: 206 VWSREQLLEQV 216 >UniRef50_O07528 Uncharacterized transcriptional regulatory protein yhcZ n=3 Tax=Bacillus RepID=YHCZ_BACSU Length = 214 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 82/208 (39%), Gaps = 10/208 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + ++I +D + + + + A +A +IE KP L+L+D +P+ Sbjct: 1 MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMD 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI + + +Q +++ T+ SD E V A++ G Y +K E L +T R Sbjct: 61 GIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKT------R 114 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + ++ + + + +P+ E + + + E + + +A Sbjct: 115 QVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRRE----KDVLTEIANGKSNKEIA 170 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 AL IS T + ++ ++ + Sbjct: 171 AALFISEKTVKTHVSNLLAKLEVADRTQ 198 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 26/228 (11%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P+ +LIV+D +AE + + + +A E P +IL+D + Sbjct: 20 MNGPIRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNM 79 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G++ + + V+ + E ++ A+ G Y++K + E + + Sbjct: 80 PDVGGLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDA 139 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + + L + + S + + E TG + + E + Sbjct: 140 VMRGEQYLCTGAAGS---------LSPQSQTSREALTG-------REQTILLELAQGKSN 183 Query: 181 ETVAQALTISRTTARRYLEYCASR-------HLIIAEIVHG---KVGR 218 + VAQAL IS T + + + L + HG GR Sbjct: 184 KEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVLQGTGR 231 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 9/223 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L+V+D+ + E + + LA + +A MI +P ++LD +P Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNG--YTVELAHDGVEALEMIASDRPDALVLDVMMPR 58 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + +L ++ TA + + G DYL KP A E L + Sbjct: 59 LDGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 123 QRKHML--ESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R + E+ DS + D + R + + + L P T Sbjct: 119 RRTKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTR 178 Query: 181 ETVAQALT-----ISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 + + + S Y+ Y + E R Sbjct: 179 SRILEEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVR 221 >UniRef50_UPI0001C351CB two component AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C351CB Length = 252 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%) Query: 5 LTLLIVEDETPLAEMHA-EYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L +L+++DE + + E A N + ++ P LI+ D +P Sbjct: 2 LKVLVIDDEVFVRKGIVMETDWASLDCMVAGEAANGLEGLEACRKYNPDLIISDIRMPKM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI +L L + V+F TA S+ E A++ FDYL+KP L ++R R Sbjct: 62 DGIEMLKILREEGNDVSVIFLTAYSEFEYARNALKLLAFDYLLKPFEDGELEDAVSRVRD 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKE-PGVQHTAET 182 + ++ + +++ ++ + AR K A+ + + + T Sbjct: 122 K--LVREREEKERREESKILSPGARTGDKSRYIK-------EAIAYITEHYNDSDLSVGT 172 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 +A++L IS +L + + + + R Sbjct: 173 IAESLGISEG----HLSHLFKKETDYTVMAYITRCR 204 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 7/197 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+A +L+V+DE + + + A +A ++ +++LD + Sbjct: 1 MSA--RILVVDDEEIVIRSCVRILN--DDLYTVDSAPGGFEALKKVDETAYDILILDVMM 56 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ +L + + H DV+ T S+++T +A++ G FDYL KP + L + R Sbjct: 57 PKMDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNR 116 Query: 121 FRQRKHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 +R+ +++ + + F P + G+ + Sbjct: 117 ALERRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTG 176 Query: 180 AETVAQALTISRTTARR 196 E +A+A I + R+ Sbjct: 177 KEMIARA--IHYNSLRK 191 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 13/220 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 T+LI +DE + + ++YI + A N + ++ + K L+LLD +P+ Sbjct: 6 YTILIADDEQDMVDFLSDYIEDEGYKAV--QAANGQEMLDIVNQRKVDLVLLDVMMPEMD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L EL V+ TA SD E +R G DY++KP + + L + +R Sbjct: 64 GMEALRELR-TSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122 Query: 125 KHMLESIDSASQKQIDEM-FNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + +S + Q + N +R D + + + K P E + Sbjct: 123 NYGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 184 AQAL-TI-----SRTTARRYLEYC---ASRHLIIAEIVHG 214 + + T +++ V+G Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMGSGGDYFRTVYG 222 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 166 bits (421), Expect = 5e-40, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 18/219 (8%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M T+L+VEDE + M ++ F + A A ++ + + L++LD + Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEA-FGVV-EAEECRPALEILRQGQVDLVILDVMM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G ++ + ++F TA + G DY+IKP + L + Sbjct: 59 PGLDGWTTCRKIRE-FSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKA 117 Query: 121 FRQRKHMLESIDSASQKQI--------DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFK 172 +R+ +Q+ + R + PL + + L + Sbjct: 118 LLRRRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQ 177 Query: 173 EPGVQHTAETVAQAL------TISRTTARRYLEYCASRH 205 G + + + + SR T ++ + Sbjct: 178 NAGRVLSRDLLLDRVWGYEFAGDSR-TVDTHVRRLREKL 215 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 84/207 (40%), Gaps = 5/207 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+D E + + + AG A+A + + KP L+ +D LPD G Sbjct: 5 RVLIVDDHPLFREGVKSLVERSANYQAVGEAGCGAEALALAQELKPDLVTMDVSLPDMSG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 I ++ ++ ++ + + V+EA + G Y++K RL Q + + Sbjct: 65 IEVVRGILDLAPETRILMLSMYPKFDYVAEAFKAGAKGYVVKETTTARLIQGFDALCRGE 124 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 ++ SQ + ++ AR + + G+ LT +++ + + +A Sbjct: 125 FFVDG--QVSQDLVAKLAQGAARDQALQDEKYGL--LTPRE-QQVLRLVAEGSSTRQIAA 179 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIV 212 A+ +S T + + + +++ Sbjct: 180 AIELSPKTVENHRTNLMKKLDVHSKME 206 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 7/219 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 ++V+DE + + A+ + G AG+ +A + KP L++ D +P Sbjct: 5 KAVLVDDEENVRYLLADLLESFHLGIEVTGQAGDGEEALKLCRSLKPDLVISDIKMPGLD 64 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI++L + + VF +A +D E A+ G Y++KP+ E + Q L + Sbjct: 65 GIHMLEAVKKISPEIICVFVSAYTDFEYAKAAIANGARGYILKPVEPEEMYQLLKTVKAE 124 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDEL--PTGIDPLTLNAVRKLFKEPGVQHTAET 182 + Q E+ A D G + A+ + + E+ Sbjct: 125 WMQSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKALNYMEDHYHEDISLES 184 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQR 221 +++ + ++ + Y + + + + R ++ Sbjct: 185 ISEVVFLN----KNYFSELFKKETGKSFVQYLTEYRLEK 219 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 81/208 (38%), Gaps = 8/208 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+D L + + + I A N +A ++ + KP L+L+D +P Sbjct: 1 MKVLIVDDHLMLRKGVLSVLSNT-DLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLD 59 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L Q + VV T + + + EA++ G YL+K + E L +L Sbjct: 60 GVEATRKLKQMYPDLKVVILTVSEIDKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISG 119 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 I S ++ + F + + P + + + T + +A Sbjct: 120 ---EAPISSVMAAKMLKEFRQPRANTTGKQPGQQLSPREIE----VLRLASTGLTYKEIA 172 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 L ++ +T + ++ + + + Sbjct: 173 AKLYVAESTVKNHMRHILEKLHLRNRSE 200 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 165 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 7/203 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+T + ++ Y++ + LAG+ A + KP L++LD LP G Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAG--YAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + + L + VV TA + + G DY++KP + L + +R Sbjct: 68 LEVCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRA 126 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + + AR D + + + L + PG + + + Sbjct: 127 RTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLE 186 Query: 186 AL-TIS---RTTARRYLEYCASR 204 + S +T ++ + Sbjct: 187 QVWGWSFGDHSTVTVHMRRLREK 209 >UniRef50_UPI00018507A5 two component LuxR family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018507A5 Length = 212 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 9/217 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LI +D + + + + P I AG+ +A M P L+L+D +PD Sbjct: 2 KSIRVLIADDHPLFRQGVSSVLANTPDNEVIAEAGSGEEAVQMACNLLPDLVLMDIQMPD 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI +++ ++ T D +V A++ G Y++K E + + + Sbjct: 62 LNGIEATRKILSKCRDIYIIIITMFEDDTSVFSAMQAGARGYVLKDAEKEDILRAVRAIA 121 Query: 123 QRKHMLESIDSASQKQIDEMFN-AYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + + S + + ID + L + ++ + Sbjct: 122 KGEVLFSSG--VASRMIDYFAQGEVTQTVVASTLFPELTSRE----SEVLFLLSKGASNS 175 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 VA+ L +S T Y+ ++ + GR Sbjct: 176 EVAETLGLSNKTVYNYVANILNKLQVSDRQE--SRGR 210 >UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Actinobacteria (class) RepID=D2AX12_STRRD Length = 239 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 83/209 (39%), Gaps = 8/209 (3%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +LIV+D+ + + + P F + A N AQA + R +P ++++D +P Sbjct: 11 IRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLD 70 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ EL V+ + E V A+R G + +L K + E L + Sbjct: 71 GVGATRELAATVPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHA- 129 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEP-KDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + + + + Y R PTG+ LT V ++++ + Sbjct: 130 -----GEAAVAPRLLTRLISTYVRAPHGTRPTPTGLGELTPREV-EVWRLMATGLDNTGI 183 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIV 212 ++ L IS +T + Y+ + + Sbjct: 184 SRTLDISLSTVKNYITSIFDKLAVRDRAQ 212 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 9/208 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TAP+ +LI +D + E + PG + A N A + + P +++LD +P Sbjct: 8 TAPIRVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMP 67 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + G+ L +A V+ + E V E +R G YL+K A E L + Sbjct: 68 EESGLKAAARLREALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAAIRAV 127 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + + P L R + T + Sbjct: 128 HAGGTFFSPAV---------VRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVARGLTNK 178 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIA 209 +A L ISR T + E + I + Sbjct: 179 AIAAELGISRRTVEAHRESLMRKLQIHS 206 >UniRef50_A9B4P1 Two component transcriptional regulator, LuxR family n=11 Tax=Bacteria RepID=A9B4P1_HERA2 Length = 257 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 80/216 (37%), Gaps = 4/216 (1%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M A + +L+V+D + + I + + ++I +P ++L D L Sbjct: 1 MYATVKVLMVDDHPLFRQGVRWALSSERDIKIIGEGSSAEEGLVLISEHEPDVVLTDLNL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+ + + + VV + E A+R G Y K I+ + L L R Sbjct: 61 PNMDGLEFTRTIRRQYPNIGVVMLSVYESDEHAFNALRAGAAAYYSKEISPKTLATVLRR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEP----KDELPTGIDPLTLNAVRKLFKEPGV 176 + ++++ + + D + + + + +L + + ++ + Sbjct: 121 VARGEYVINDVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLFSPLSDREIEVLEHIAS 180 Query: 177 QHTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 T + +A AL IS T + ++ + + Sbjct: 181 GATNKDIADALKISTQTVKNHISSILRKLSLNDRTQ 216 >UniRef50_B4VJC2 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VJC2_9CYAN Length = 237 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 24/225 (10%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+ L + ++ Q+ + A+A + P L++ D +P+ G Sbjct: 3 KILVVDDDRTLRITLTRALENMG--YQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDG 60 Query: 66 INLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 I L + +F + ++E G DYLIKP+ L + + Sbjct: 61 IEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQLE 120 Query: 124 RKHMLES--------------IDSASQKQIDEM--FNAYARGEPKDELPTGIDPLTLNAV 167 R + + + A+Q + + +A E P + P Sbjct: 121 RTRRIHALIVQLMQLNASSAVTELANQAKTAQATEVSAPQEEETVTPTPLPLTPAEERVF 180 Query: 168 RKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 ++ + T + ++ L IS T + +L ++ + Sbjct: 181 WEVIQ----GLTNKQISNRLFISPRTVQTHLSSILNKLKLGNRAQ 221 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 11/220 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+L+V+DE P+ +M + +L AG+ QA +I KP LILLD LP G Sbjct: 5 TILVVDDEPPIRDMLRVALEMAE--YAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSG 62 Query: 66 INLLHELVQAH--YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 I L L + ++ TA + + + + G DY+ KP + L L + Sbjct: 63 IELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 R + + + + + + ++P + P + +T + Sbjct: 123 RTDSMGISEPIQVEGL--CLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQL 180 Query: 184 AQA-----LTISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 + + T ++ + + R Sbjct: 181 LDHVWGGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVR 220 >UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 Tax=Dehalococcoides RepID=D2BGT0_DEHSV Length = 232 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 89/207 (42%), Gaps = 7/207 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LI +D L E + + + AG+ +A M+ +FKP ++L+D +P G Sbjct: 5 KVLIADDHAVLREGMSRLLSQEKDIEVVGEAGDGQEAVDMVAQFKPDVVLMDIVMPRLTG 64 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + + + + ++ TA SD+ + + G YL+K + + + + + Sbjct: 65 VEATKLIKKNNPSTCILILTAYSDIRYILGLLEAGASGYLLKSAKSDEIVGAIRAIKAGE 124 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 +L+SI A++K ++ + N ++ +D++ + P ++ + + +A Sbjct: 125 SVLDSI--ATRKLLERVVN-VSKESDEDKVRGQLSPRE----VEILQLASKGLSNREIAD 177 Query: 186 ALTISRTTARRYLEYCASRHLIIAEIV 212 LT+S T + +L ++ Sbjct: 178 KLTLSMRTVKAHLSNIFNKMRCSCRTE 204 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 10/216 (4%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 L+V+D+ + E+ Y+ GF +L AG+ A +E+ +++LD LP+ G Sbjct: 2 LLVDDDAHIRELCRMYLE-HAGFD-VLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQ 59 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 +L E+ + V+ TA D E + G DYLIKP + L + +R + Sbjct: 60 VLAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 + + + + + R + + P + + L P + E + + Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179 Query: 188 ------TISRTTARRYLEYCASRHLIIAEI-VHGKV 216 SR T ++ + L + + Sbjct: 180 WGLDFDGDSR-TVDVHVTRLRQKLLASNTPYEYLET 214 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 80/210 (38%), Gaps = 14/210 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TAP ++IV+D + + + FS + A N ++A + R +P LILLD + Sbjct: 8 TAPFRVMIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMK 67 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G++ L L ++ T + V V G YL+K E L + + Sbjct: 68 GLSGLDTLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSEPEALLAQIRQA 127 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + + SA + + + L+ ++++ + + + Sbjct: 128 AEGRSVFSESVSA----------YLSTRSEIADPLADLTERELDVLQEVVR----GMSNK 173 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEI 211 +A L IS T + ++ + + + + Sbjct: 174 QIAAQLHISEETVKVHIRNLLRKLNVRSRV 203 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 14/210 (6%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P +L+ +D + E + + + AG+ + + P L+LLD +P Sbjct: 2 KPTKVLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVRDHFPDLVLLDLNMPR 61 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI + ++ + V+ T + E V E +R G Y+ K + E L + + + Sbjct: 62 MGGITAIKKIKEISPGIKVLILTIHDEEEYVYEVIRSGAEGYIQKDVKPEELKRAIDKVI 121 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + N + + +++ + + + Sbjct: 122 KGDKVFPRSTE----------NEVREVVNEKYEVCELSSRE----QEVLELLAQGMSNKQ 167 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +AQ L IS T + ++ + + Sbjct: 168 IAQELFISEKTVKNHVSNILRKLSVNDRTQ 197 >UniRef50_Q9RU37 DNA-binding response regulator n=3 Tax=Deinococci RepID=Q9RU37_DEIRA Length = 225 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 80/213 (37%), Gaps = 15/213 (7%) Query: 1 MTAP-LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MT P + +L+V+D + + ++ G + A N +A ER +P ++++D Sbjct: 9 MTTPTVRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLM 68 Query: 60 LPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 +P GI EL + +V+ T+ + V+ A+ G Y++K + + L + Sbjct: 69 MPVMDGITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIH 128 Query: 120 RFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHT 179 + + L + R E+ + P + + + Sbjct: 129 AAARGEVRLHPEAA----------RRLVRDFRSPEMRESLTPKE----TAVLQLLARGQS 174 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A +S T + ++ S+ + + Sbjct: 175 NKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQ 207 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 12/209 (5%) Query: 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + LL+VED + +++ F + A N A + +P ++L+D +P Sbjct: 14 KIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKM 73 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 GI ++ Q ++ ++ S+ + V A+ G Y +K + E+L ++ + Sbjct: 74 DGIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYE 133 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + R K E P + +++ +E + + + Sbjct: 134 GNANFHPKVTPA---------LLGRSAVKKENPFSM---LTKREQEVLQEIAKGRSNKEI 181 Query: 184 AQALTISRTTARRYLEYCASRHLIIAEIV 212 A L I+ T + ++ ++ + Sbjct: 182 AAELHITEQTVKTHVSNILAKLEVDDRTQ 210 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 8/210 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P+ +LI+ED+ + E+ Y+ A + + + P I+LD L Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYI--SASDGEEGLELFYSESPDCIILDIML 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G + + ++ T + V + + G DY++KP L + Sbjct: 59 PKLNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKT 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R + ES Q + + + + + P + L P T Sbjct: 119 VLRRTILSESEKDRLQFD-NIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTR 177 Query: 181 ETVAQAL-----TISRTTARRYLEYCASRH 205 + + + T +++ + Sbjct: 178 QQLLDRVWGYEFNGDPRTVDVHIKRIRDKL 207 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 9/209 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + ++ ++ I +A + +A + F P LI+LD LP+ G Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHD--FSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + ++ Q ++ TA E G DYL+KP + L + +R Sbjct: 62 EEVCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 126 HMLESIDSA-SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + + + + N + L + PG T E +A Sbjct: 121 NQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLA 180 Query: 185 QAL-TISR----TTARRYLEYCASRHLII 208 + + + T +++ + + Sbjct: 181 KKVMGLEYKGYDRTIDAHIKNIRKKLNLE 209 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 90/216 (41%), Gaps = 10/216 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 T + +L+ +D + E E I+ G + A + +A M + P ++++D +P Sbjct: 4 TQMIKVLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEMSMKVHPDVVVMDIAMP 63 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI ++ Q ++ TA + + + G +L+K + +L + + Sbjct: 64 RLNGIEATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNVKGTQLLEAIRAV 123 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + +L+ S +++ ID++ N + E ++PLT + ++ K + + Sbjct: 124 YAGESVLQP--STTRRVIDQLINKATKTEEVSA----VNPLTDREI-EVLKMAARGVSNK 176 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV---HG 214 +A L +S T + +L + + + +G Sbjct: 177 DIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYG 212 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 11/180 (6%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + LLI++DE + E GF+ A N + +I P L+LLD LP Sbjct: 1 MNLLIIDDEQIVREGLKTIFPWAEYGFTVCGEAKNGEEGVSLIRSLNPDLVLLDIRLPKL 60 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF-- 121 G+ +L + + + G ++ + +D + A+R GV YL+KPI E L + + Sbjct: 61 DGLEVLKTVREEGFGGQIIILSGYADFDYAKTAIRLGVCSYLLKPIDEEELLHAVKQAKE 120 Query: 122 ---RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPT-----GIDPLTLNAVRKLFKE 173 ++++ +++ S Q + + + + G + + + K+ Sbjct: 121 TLEKEKRESDQALKSPEQVRRELLLDILNGGAEHKREELLACSMDLTADAYQVLLVVIKD 180 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 10/211 (4%) Query: 1 MTAPL--TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 M+ + ++++V+DE + E+ + H GF + A + ++A +IER P LI++D Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASL-HFAGFE-VETAASGSEAVEVIERVNPNLIVMDV 58 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 LPD G + + Q V+F TA D + + G DY+ KP + E + + Sbjct: 59 MLPDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 +R + K D N + + +P + P + L G Sbjct: 119 RAILRRTQEPDEETHII-KVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVL 177 Query: 179 TAETVAQAL-----TISRTTARRYLEYCASR 204 + + + Y+ Y + Sbjct: 178 SKSQILNHVWQYDWGGDAAIVESYISYLRKK 208 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 15/215 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKP----GLILLD 57 T L ++IV+D + Y+ P F + AG+ A M+E P +IL+D Sbjct: 4 TNTLKVMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVILMD 63 Query: 58 NYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 +P GI +L+ + ++ T+ + + V A+ G Y++K ++ E L Sbjct: 64 LMMPGMDGIETTRQLIVEYPNLKIIMLTSFLEDDKVYGAIEAGAVSYVLKTVSAEELIYA 123 Query: 118 LTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQ 177 L + ++ + S A RG + +G + LT +++ Sbjct: 124 LHGAVKGMPVMTADVS----------QALTRGLRQRTAQSGDEELTERE-KEVLLLIAEG 172 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + + + L IS T + ++ + + Sbjct: 173 RSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQ 207 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 1/146 (0%) Query: 6 TLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +L+V+DE + + I + G + A N +A ++E L+L D +P Sbjct: 4 KVLLVDDEPHITRNLEKVIPWEMLGLTVGGTAKNGVEALELLESESFDLVLCDIRMPVMD 63 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ L+ + + D++ + D A++ GV DY++KPI Y+ L + R Sbjct: 64 GLELVRHIREKGTESDIIMLSGYQDFAYTRAAIQYGVKDYVLKPIPYDELTGVIARVMAN 123 Query: 125 KHMLESIDSASQKQIDEMFNAYARGE 150 + + S Q++I M + + Sbjct: 124 QRQKKKQQSEEQQKIGRMIDLASEKV 149 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 11/220 (5%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D+ + ++ Y+ G+S I A + +A + P ++LLD LP Sbjct: 1 MKVLVVDDDEKILKVLTAYLEK-EGYSVI-TARDGWEAVDKARQLGPDIVLLDVMLPSLD 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G + E+ + ++ TA D + G DY+IKP + + + + +R Sbjct: 59 GWGVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR 117 Query: 125 KHMLESIDSASQ--KQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 D + K D + + +R P + P + PG + Sbjct: 118 LQPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 183 VAQAL-----TISRTTARRYLEYCASRHLIIA-EIVHGKV 216 + + + T +++ + E + K Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKT 217 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 2/182 (1%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + + ++ G++ + A N +A ++ LI+LD +P+ G Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQ-GYNIV-EAVNGKEALKEMKCHSFQLIILDVMMPEMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + E+ + + ++ TA ++ + + G DYL KP E L + +R Sbjct: 62 WEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRA 121 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + ++ + + + + P + P ++ L P + + Sbjct: 122 VVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLL 181 Query: 186 AL 187 + Sbjct: 182 KI 183 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 14/211 (6%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIVEDE + E+ Y+ ++ A N + + +P LI+LD +P G Sbjct: 3 KILIVEDEENIREVCKRYLEREE--YEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 L E+ Q ++ TA + + G DYL KP + L + +R Sbjct: 61 WELCGEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG 119 Query: 126 HMLESIDSASQKQI----DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + S ++ D R E + + + K P + Sbjct: 120 NQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 182 TVAQAL------TISRTTARRYLEYCASRHL 206 + + + S T + + Sbjct: 180 QLLELIWDFGHEGAS-NTVTVLVSRLREKLE 209 >UniRef50_C7MI23 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Micrococcineae RepID=C7MI23_BRAFD Length = 238 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 4/211 (1%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +AP+ +L+ +D + + P + + AG+ A +P ++L D +P Sbjct: 22 SAPIRVLVADDHPAVLSGLVALLDSAPDLAVVAQAGDGETALAAAREHRPDVVLTDVRMP 81 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI + L + V+ + E V A+ G YL+K +R+ + Sbjct: 82 GATGIEITPALRETGAH--VLVISGFDLDEYVLGALAAGADGYLVKTEDPQRILAAVRDV 139 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + +L + +A++ + E+ + G +P + T + Sbjct: 140 HRGDAVLSA--AATRAVVAELRGRASGHPAAGRSAVGPEPPFTRREEDVLALVAQGRTNQ 197 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ L + TT + +L + + + + + Sbjct: 198 QIARELFVEVTTVKSHLSHALVKLQLDSRVQ 228 >UniRef50_UPI00017896CE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017896CE Length = 261 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 6/190 (3%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 L L+V+DE P+ ++ + G + LA + +A + +++ P LIL D +P Sbjct: 2 LKALLVDDEAPILNNLSKVLPWEEMGMKVVGLARSGMEALEVADQYNPDLILCDIRMPVM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ + ++ + ++ T + E EA++ GV DY+ KPI Y L + + Sbjct: 62 DGLTFITKIREKGSRAEIFLLTGYQEFEYAREAIKLGVKDYISKPIHYGELEMKIREIGE 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + + + E + P + L + G E + Sbjct: 122 EIRKKRAKEKYYNTV--SLIDEAPNPEAVKKTPEQLVSSALEYINTHM---GQDLGIEEL 176 Query: 184 AQALTISRTT 193 ++ L IS + Sbjct: 177 SEHLGISSSY 186 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 9/195 (4%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + M A + Q+ A N AQA M+ + IL D +P G Sbjct: 10 NVLVVDDEENMRHMLAAMLTREG--YQVETAANGAQALEMVAKQPFDFILCDIKMPRMDG 67 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L + V+ +A ++T EA++ G +DY+ KP + + L + +R+ Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + + Q+ RG ++ + AV L + T V Sbjct: 128 RLKRENIALRQQ-----IATLGRGYTFGKIIAK--SKAMQAVTDLITKVAAHDTTVLVTG 180 Query: 186 ALTISRTTARRYLEY 200 + R L + Sbjct: 181 ESGTGKELVARSLHF 195 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 11/206 (5%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+VED+ + E Y+ H + A + +A + R +P L++LD LP G+ Sbjct: 14 ILVVEDDPLILETIRRYLEHAG--HRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGL 71 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L + Y V+ TA ++ + A+ G DYL KP + + L + +R + Sbjct: 72 ALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 D + + + + + R P + + + +L PG ++ + + + Sbjct: 132 ASGYRDCSPKNGL--LVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLER 189 Query: 187 L------TISRTTARRYLEYCASRHL 206 + R T ++ + Sbjct: 190 VWGYDFEGGHR-TIDVHVRKLREKLE 214 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 11/210 (5%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ +L+V+D L + + G + AG+ +A ++ P ++++D +P Sbjct: 17 EPIRVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPG 76 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI L+ V+ T + D +V A+R G Y++K + Sbjct: 77 VTGIEATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAAVRAVA 136 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + ++ + + P+ + R++ + Sbjct: 137 R-------GEAVYGPAVARRIRRFLTTGPESGPFPELTQRE----REILDLLASGKSNAE 185 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ L +S+ T + +L ++ + Sbjct: 186 IARRLFLSQKTVKNHLTSIFAKLQVADRTQ 215 >UniRef50_D1C1C8 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1C1C8_SPHTD Length = 237 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 8/210 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 +++L+V+D + + P I AG+ A+ + ERF P +IL+D +P Sbjct: 21 KAISVLLVDDHVLFRQALRHLLEAEPDIRVIGEAGDGRSAQQLAERFHPDVILMDISMPG 80 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ +L ++ T ++ V A+R G YL+K ++ + Sbjct: 81 VDGVTATRDLKAGIPNTKIIILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVA 140 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + +S + Q+ R + + LT + +L + + + Sbjct: 141 R-------GESVIEPQLATKLLNEFRRISEFREEETVAGLTEREI-QLLRLVASGMSNKE 192 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A L+++ +T + L + + Sbjct: 193 IAAELSLAESTVKNRLSLLFEKLDVKDRTQ 222 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 7/191 (3%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 MTA +LIV+DE + M + + GF A N A + P ++L+D + Sbjct: 1 MTAINRILIVDDEDNVRRMLSTAF-ALQGFE-THCANNGRTALHLFADIHPDVVLMDIRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ GI L E+ V+ TA +++ET EA+RCG FDY+IKP + L + R Sbjct: 59 PEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQR 118 Query: 121 FRQRKHMLESIDSASQKQID--EMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 Q + M + I Q + + ++ + L+ L G Sbjct: 119 ALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLIS--GESG 176 Query: 179 TAET-VAQALT 188 T + +A+A+ Sbjct: 177 TGKELIARAIH 187 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 6/184 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+VEDE P+ EM + GF + A + A + P LILLD LP G G Sbjct: 4 RILVVEDEAPIREMVCFVLEQ-NGFQPV-EAEDYDSAVNQLNEPWPDLILLDWMLPGGSG 61 Query: 66 INLLHELVQAH--YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 I + L + VV TA + E + G DY+ KP + + L + + Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 R + + + + + + E P + P + P ++ E + Sbjct: 122 RISPMAVEEVIEMQGLS--LDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQL 179 Query: 184 AQAL 187 + Sbjct: 180 LNHV 183 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 11/208 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 T+LIVED + +M EY+ ++ +A N + + +P L+LLD +P G Sbjct: 24 TVLIVEDNAGVRDMIREYLEEHG--YRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L V+F TA + G DY+ KP + L + +R Sbjct: 82 LEFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS 140 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA----- 180 +++ + R + + + PG T Sbjct: 141 SEPLPNAVLRAGELE--LDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLE 198 Query: 181 ETVAQALTISRTTARRYLEYCASRHLII 208 + +AL S T ++ ++ Sbjct: 199 QLQEEALG-SERTIDVHVRNLRAKIEAE 225 >UniRef50_B9MPQ9 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=B9MPQ9_ANATD Length = 211 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 78/212 (36%), Gaps = 11/212 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P +LIV+D + + + + F + L N +A +E+ ++L+D + Sbjct: 1 MKKP-KVLIVDDNPAVLDGLKIILE-LENFEVVSLCTNAKEAIEFLEKKHADVVLMDIRM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI + V+ T + + + +++ G Y++K + + ++ Sbjct: 59 PVMDGIEGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILS 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 K +++ K+I + + K L ++ K ++ Sbjct: 119 VLDGKVVMD-------KEIALYISDVLKRTSKQLLEK--TQNLTERELEIAKLISQGYSN 169 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+ L IS T R Y+ + + Sbjct: 170 KEIARMLFISEGTVRNYITSILQKLNLKNRTQ 201 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 9/219 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+VEDE LA + ++ + +A + + L +LD LP Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQ--YAVDVAHDGETGCDLALTDSYDLAILDIMLPKMS 58 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+++L + +A V+ TA +E + G DYL+KP + L + +R Sbjct: 59 GLDILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRR 118 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + D+ + R ++ P + + + P + E + Sbjct: 119 TGQIAGGDAIEAGPF--RLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVIL 176 Query: 185 QAL-----TISRTTARRYLEYCASRHLIIAEIVHGKVGR 218 + + Y+ + + + R Sbjct: 177 DRVWGPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVR 215 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 78/215 (36%), Gaps = 10/215 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + +++ +D + + + + + A + A A ++ KP L+++D + Sbjct: 1 MSNIIRVVLADDHVFVRDGIKSLLENEANIEVVGEAIDGADALEVVTATKPDLLIVDIRM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ GI ++ +L + ++ + E V ++++ G YL+K + E + L Sbjct: 61 PNLTGIEVVEKLRSENNNVKIIMLSMHESEEYVLKSIKAGADGYLLKGSSKEEFLKALHA 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTL---NAVRKLFKEPGVQ 177 S I + + P + +++ Sbjct: 121 V-------SSGGKYFSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKEILTLLLSG 173 Query: 178 HTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + +A+AL IS+ TA + + + + Sbjct: 174 KGNKEIAEALEISKRTAEVHRFNLMKKLKVKNLME 208 >UniRef50_P72781 NarL subfamily n=42 Tax=Cyanobacteria RepID=P72781_SYNY3 Length = 282 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 18/232 (7%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M P++LL+V+DE + E ++ F + LA N +A ++ P L++ D + Sbjct: 52 MAEPISLLLVDDEPGVRESVQAFLEDSGDFK-VDLAANATEAWDYLQHHLPALVISDIMM 110 Query: 61 PDGRGINLLHELVQ--AHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 P G L +L + VVF TA + + G +L KP + L + Sbjct: 111 PQVDGYQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIV 170 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGI----DPLTLN---AVRKLF 171 R+ S ++ E++ + + P+GI P+ L+ + + Sbjct: 171 RNLLARQQASSDAGS-ESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVL 229 Query: 172 KEPGVQHTAETVAQALTISRTTARRYLEYCASR-------HLIIAEIVHGKV 216 + +A L S +Y+ ++ L+ + HG Sbjct: 230 DLVSQGLMNKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGLT 281 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 79/210 (37%), Gaps = 10/210 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + +L+V+D L + + + + A + +E +P IL+D L Sbjct: 1 MRKMIKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINL 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI + + + V+ T E + +A++ G YL+K + E++ + Sbjct: 61 PGKNGIEATELVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRM 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + ++ + ++ + + + + + +L K + Sbjct: 121 LYRGDSVIHP------RMTKKLITYHQQKMKVESNENELTEREKEILFELVK----GLSN 170 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAE 210 + +A+AL IS T + ++ + + + Sbjct: 171 KEIAEALYISDKTVKIHINKIFKKLNVKSR 200 >UniRef50_Q1N4K0 Two-component system regulatory protein n=1 Tax=Bermanella marisrubri RepID=Q1N4K0_9GAMM Length = 211 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 9/208 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L++ED+ + + + PGF A + + M ++ +ILLD +P Sbjct: 2 IKILLIEDQKLVRDGIKTLLELKPGFEVTACASDGQEGLEMAGQYAVDIILLDIRMPVMN 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L L + + V+ T D E +S+ R G YL K + + L + + Sbjct: 62 GVEVLRGLKERSWFTPVIILTTFDDHELISQCTRLGAKGYLRKDVGLDELTSAIKHVLKG 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + + + YA+ P++ L I+ T ++ + ++ +A Sbjct: 122 GDWVRPA-------VTDRISRYAQAIPQESLSDKIELSTSE--TQVLRLVAAGYSNNEIA 172 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 + ++ T R + + + Sbjct: 173 STVFKAQGTVRNQISSILEKLDVRDRTQ 200 >UniRef50_A9U6E4 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U6E4_PHYPA Length = 563 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 9/196 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + LL+V+D + E + F + A + QA + + +P L+L+D +P Sbjct: 358 IRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELCRQLRPQLVLMDVDMPIVD 417 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI+ + ++ ++ T D + EA+R GV YL+K + L +T+ + Sbjct: 418 GISASRTIKESWPHIRILILTTFEDTKQALEALRSGVDGYLLKSMQPLELAETIRTVHRG 477 Query: 125 KHMLESI---DSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 ++E +Q + D + K + P L ++ + + Sbjct: 478 GTLIEQGMSHKLFAQLEADN--SGDDPSSIKASSAYDLTPRELEILQFV----SKGLRYK 531 Query: 182 TVAQALTISRTTARRY 197 ++A +S T R Y Sbjct: 532 SIASNFYLSDGTVRNY 547 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 ++LIV+DE + + + GF + A N +A + + P L+LLD ++P G Sbjct: 4 SILIVDDEPSILDSLGGILTD-EGFEVV-TALNGYEAIKQLSKISPDLMLLDIWMPGMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + L ++ + H VV T +ET +A + G +D++ KP++ E++ T+ + Sbjct: 62 LETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFR 121 Query: 126 HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQ 185 + E +K +++ + E+ I+ + L G T + + Sbjct: 122 RLEEENLYLRKKALEK-HSITGFSPAIMEVRNQINTVAPTDSWVLIS--GENGTGKEMVA 178 Query: 186 ALTISRTTAR 195 I +AR Sbjct: 179 RT-IHHLSAR 187 >UniRef50_B2A7N5 Two component transcriptional regulator, LuxR family n=5 Tax=Firmicutes RepID=B2A7N5_NATTJ Length = 232 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 12/222 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + ++I +D+T LA+ I + ++ N + + E+ P +IL+D + Sbjct: 1 MSK-IKVMIADDQTILADSLKTIIDLEDDMEVVAVSSNGEETLEISEKLLPDIILMDIRM 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G+ +L + + ++ T E + +A+ G YL+K I ++L ++ Sbjct: 60 PKMDGVECTKKLKEKYPEIKIIILTTFDHDEYIVDALSYGASGYLLKDIDGDKLISSIRD 119 Query: 121 FRQRK---------HMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTL--NAVRK 169 K ++ ID+ Q+ D+ + + + + E I+ + Sbjct: 120 AYNDKLLIPTSIAAKLIGKIDNRKQQPTDDHKDEPLKSQDRKESQKEINLYEELTQREIE 179 Query: 170 LFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEI 211 + + + + +A+ L I++ T + Y+ S+ + Sbjct: 180 IAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERT 221 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 83/214 (38%), Gaps = 13/214 (6%) Query: 1 MTAP--LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN 58 MT L ++I +D + + GF + A N +A ++ P L+L+D Sbjct: 1433 MTNKTGLRVVIADDHALFRDGIKSLLES-EGFQMVGEASNGQEAVELVHNLSPDLVLMDL 1491 Query: 59 YLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 +P G++ + + V+ TA+ + + + EA++ G ++ K + E Q L Sbjct: 1492 SMPVMGGLDAIRLISADKPSVKVIVLTASEEDKDLFEAIKAGAQGFIPKNLESEEFFQLL 1551 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 + + + + ++ + ++R L + ++ L Sbjct: 1552 RNVIR------GEPAITPRLAGKLIDEFSRPVRSSSL-QMLTDREQEILQLLV---NGVT 1601 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + +++ L +S T + +L S+ + + Sbjct: 1602 STKDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQ 1635 >UniRef50_A6TNJ5 Two component transcriptional regulator, LuxR family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNJ5_ALKMQ Length = 212 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 13/211 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 +T+L+V+D + I G AG L +A + KP ++LLD LP Sbjct: 3 KKSVTILLVDDHAIVRYGIRSLIERNDGLKVCGEAGTLQEAYHKVSDLKPDIVLLDIKLP 62 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 DG G E+ + V+ TA ++ + EAV+ G YL+K I + + + Sbjct: 63 DGDGAAGCREIKKRVPDVKVIILTAYAEDSIILEAVKAGAEGYLLKDIDSKNIITAIRNV 122 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + S + + I ++ N + ++ T D L + + + Sbjct: 123 ------VGGKTSLANEAISKVLNEVKQNCSGEDDLTSQDKSILELI-------SQGKSNK 169 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ + +S T R + Sbjct: 170 DIAKEIYVSEKTVRNNASRIFKKINAGNRTE 200 >UniRef50_C6J1B9 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1B9_9BACL Length = 528 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 17/185 (9%) Query: 3 APLTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 L +LIV+DE + + I GF A N +A ++E P +I D Y+P Sbjct: 2 EKLKVLIVDDEHLIRNLIRLRIDWEQEGFEITGEASNAQEALELVEEQNPDIIFTDIYMP 61 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 + GI L +++ + +V + + E + ++ G+FD+L+KPI L Sbjct: 62 NMDGIELSRRVLERYPHIKIVVVSGHDEFEYAQQGIKIGIFDFLLKPIRASDLLHVAGNL 121 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 +Q+ H + K+I +M R P R LF+ + E Sbjct: 122 KQKIH----EERTRAKEISKMKEELERNLPYLRE------------RFLFQWLNGALSRE 165 Query: 182 TVAQA 186 + + Sbjct: 166 EIVEQ 170 >UniRef50_C6IZP2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZP2_9BACL Length = 520 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 1/159 (0%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 + +LIV+DE L E +I G+ + +A N +A +++ P L++ D +P Sbjct: 2 IKVLIVDDEPKLREGLRTFIDWGAYGYEVVDMAANGNEALEKYQQYHPDLVVADIRMPGM 61 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ +L ++ + +D +A+ YL+KP+ + L L + + Sbjct: 62 DGLQLIEKLRAQDPNLHILILSGYADFSYAKKAMTHRADGYLLKPVDEDELKDYLWKIKL 121 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPL 162 ++ + + A + E PL Sbjct: 122 TIDEEKASEQWKHVTTEWNREALIQSVLTGEDEEDPTPL 160 >UniRef50_A9B5L0 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L0_HERA2 Length = 207 Score = 162 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 14/208 (6%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +L+V+D + + F + A + QA +IE+ +P ++LLD LP Sbjct: 2 IRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLS 61 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI ++ + + T E + A+ G YL+K + E + + + + Sbjct: 62 GIEVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEG 121 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 L+S +A + A +DE + L+ ++ L + + + +A Sbjct: 122 GAALQSGIAA------RVLKRLATEPAEDE----LSQRELDVLQLLVR----GESNKAIA 167 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 +L IS T + ++ + S+ + + Sbjct: 168 LSLNISENTIKSHVSHIFSKLDVRSRAE 195 >UniRef50_C0Z7M8 Two-component hybrid sensor and regulator n=11 Tax=Bacillales RepID=C0Z7M8_BREBN Length = 602 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 17/215 (7%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + L+IV+D + + E + + LA + AQA + E +P L+L+D +P+ Sbjct: 383 IRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAVELCEELEPDLVLMDLEMPNMD 442 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ- 123 GI + + ++ + D E E +R G YL+K I L +T+ + Sbjct: 443 GITATKRIKEKWPGIRILVLSTFQDTEKAKEIMRSGADGYLLKSIESRELAETIRLVHRG 502 Query: 124 --------RKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPG 175 ML+ Q+ + + KDE G+ +++ + Sbjct: 503 GTMIAQDLFHKMLDGQPVNGQEDL----LVAPKQSEKDENAYGLTKRE----QEILQMLA 554 Query: 176 VQHTAETVAQALTISRTTARRYLEYCASRHLIIAE 210 +T+A L +S T R Y + + Sbjct: 555 QGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNR 589 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 7/210 (3%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +LI +D + + + I P I LA + +A + ++ P ++LLD +P Sbjct: 9 KKINVLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPK 68 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI L L ++ T D E + E + G Y++K E L + + Sbjct: 69 QNGIQTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANGYVLKDAESESLIKAIRDVY 128 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 Q + E+ + R E K + D LT ++ + Sbjct: 129 QGLNY------IYPTLATELVKEFNRREVKSQKRNNEDELT-RREYEVLTLLAEGINNKE 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 + L IS T + ++ + + Sbjct: 182 IGDCLFISEKTVKNHVSNIFKKINVNDRTQ 211 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 12/191 (6%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +LIV+DE + + A + + A + A +ER +P L+LLD +P G+ Sbjct: 16 VLIVDDEPGIRAVLASSLEFEG--YAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGL 73 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L A V+ TA + G DYL KP + L + +R Sbjct: 74 TACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGA 133 Query: 127 MLESIDSASQKQI----------DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGV 176 + + + D + R + + + P Sbjct: 134 LTGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQ 193 Query: 177 QHTAETVAQAL 187 T E + +A+ Sbjct: 194 ALTREQILRAV 204 >UniRef50_Q1IXN1 Two component transcriptional regulator, LuxR family n=10 Tax=Bacteria RepID=Q1IXN1_DEIGD Length = 221 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 77/211 (36%), Gaps = 14/211 (6%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + P+ +L+V+D + + ++ + A N +A ER P ++++D +P Sbjct: 7 SRPVRVLLVDDHAVVRQGLRLFLSLDSQIEVVGEAANGEEALAAAERLHPDVVIMDLMMP 66 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI L + H +V+ T+ + V+ A+ G Y++K + + L + Sbjct: 67 VMDGIQATRLLRRQHPDTEVIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADAIHAA 126 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + L + R E+ + P + + ++ Sbjct: 127 ARGEVRLHPEAA----------RRLVRDFRTPEMRETLTPKE----VIVLQLIARGYSNR 172 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ ++ T + ++ + + + Sbjct: 173 DIARDQGVTEATVKTHVSRLLGKLGLESRTQ 203 >UniRef50_UPI0000510380 two component transcriptional regulator, LuxR family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510380 Length = 231 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 4/210 (1%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 AP+ +++V+D+ + + + A + +A P ++L D +P Sbjct: 6 APIRVIVVDDDPMVVTGITGILHPAEDIELVGSASSGEEALDKAALHFPDVVLTDIRMPG 65 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 GI + LV + P VV T+ + + A+ G YL+K IA L + + + Sbjct: 66 IGGIEAIERLVNSVRPPQVVALTSFDTDDYLFRALEAGAAGYLLKDIAPVALAEAIRKVH 125 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + +L S +Q+ A + E + LT + + + Sbjct: 126 VGEPILSPR---SMRQLITKVTAGQDQRRQREAEEMLADLTERELEIAI-LVAQGLSNQE 181 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A A +S T + +L + + Sbjct: 182 IADATFMSTATVKTHLNRINIKLDTSNRVH 211 >UniRef50_B8FWU4 Two component transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=B8FWU4_DESHD Length = 265 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 11/221 (4%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIR-HIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 LLIV+DE + + + I S++ A + A A +++ +P ++L D + Sbjct: 5 KTMYKLLIVDDEPIIRQGIKQLINFQEQSISEVYEAEDGALALDIVKEKRPDIVLADINM 64 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P+ G+NL E+ V T E A++ GV DYL+KP++ + + L++ Sbjct: 65 PNLDGLNLAREIKAVDPEIRVAVITGYDYFEYAVTALKAGVDDYLLKPVSRSDILELLSK 124 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + +D + + +E + L + +P + Sbjct: 125 LVNDLKEKTEQR----RAMDSLASLKQLEHGGNEGHHHYREMILQVMNHSLSDPA--FSL 178 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGRPQR 221 +A+A+ +S YL ++ I + R +R Sbjct: 179 GRLAEAINLS----SGYLSTVFKQNFGIPFQEYLTTMRLER 215 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 80/208 (38%), Gaps = 9/208 (4%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 ++ +D+ + E + +PG + A + +A ++ P ++L+D +P G+ Sbjct: 2 VVADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCDGVE 61 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 + + H VV T +D +++ A++ G YL K E + Q + + Sbjct: 62 ATRRIRKEHPRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVMSGEAG 121 Query: 128 LESIDSASQKQIDEMFNAYARGEP---KDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 L ++ ++ + + P ELP G+ P + + +A Sbjct: 122 LSPK--VQRRLLERVTGSETVPAPCALPSELPDGLTPREAE----VLVLIAEGLSNREIA 175 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 +AL +S T + ++ ++ Sbjct: 176 RALHVSAATVKTHINNLFAKTGARDRTQ 203 >UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Z2_9FIRM Length = 209 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 79/205 (38%), Gaps = 8/205 (3%) Query: 8 LIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGIN 67 +IV+D + +++ ++ A + +A ++ + L+++D +P G+ Sbjct: 1 MIVDDHLLIRAGIKLLLKNTSAYTVTAEAESGEEALRLLAQQPIDLVIMDISMPGMGGLA 60 Query: 68 LLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 + E+ + ++ + D E + +A++ G YL K A L L Q + Sbjct: 61 CIREIRAHYPAVKILVLSMHEDEEYIYKAMQYGAMGYLPKTSADNELFDALQVLSQGRRY 120 Query: 128 LESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQAL 187 L Q +D MF E D+ + + R++F E +T +A+ L Sbjct: 121 LSPNAQ--QSLMDIMFRPA--EEAADDPRSVLTARE----REVFDELIHGYTITEIAEQL 172 Query: 188 TISRTTARRYLEYCASRHLIIAEIV 212 +S T + ++ + Sbjct: 173 HLSVKTVDTHKKHIYEKLHCSRRSE 197 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 162 bits (411), Expect = 8e-39, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 6/192 (3%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +LIV+DE + + ++ A + + P LI LD +LP G Sbjct: 4 RVLIVDDEDGIRFSLRGILEDEG--YEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + +L L A V+ + ++ET A++ G +D++ KP++ E++ + + + Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 126 HMLESIDSASQKQIDE-MFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + + + EL I + L G T + +A Sbjct: 122 RLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLI--TGENGTGKEIA 179 Query: 185 QALTISRTTARR 196 +I ++ R+ Sbjct: 180 AR-SIHASSRRK 190 >UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Roseiflexus RepID=A7NIZ3_ROSCS Length = 230 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 8/211 (3%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 + +LIV+D A + PG + A N A A + R L+++D +P Sbjct: 11 SPSTRVLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQMP 70 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 GI + H ++ T + + + EA+R GV YL+K + + + + Sbjct: 71 VIDGIEATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASRREIIGAVRQV 130 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 + + L + + A P D+ T I+PLT +++ + T Sbjct: 131 LRGEAFLNP------DLVLQTLRRLAHATPTDDA-TPIEPLTPRE-QQVLRLLMQGKTNR 182 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ L IS T + ++E+ ++ + Sbjct: 183 EIARELIISPGTVKVHVEHIIAKLGVSDRTQ 213 >UniRef50_C7MG00 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MG00_BRAFD Length = 255 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 24/234 (10%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 + +L+V+DE + I G + A + A I P ++L+D +P Sbjct: 12 QRVRVLLVDDEALMRSGLRLMIDGAHGIEVVGEAADGQTALDQIAALCPDVVLMDIRMPR 71 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ L L VV TA E + +A+R G +L+K E + + + Sbjct: 72 MTGLEALRALTARGDAVRVVMLTAFDTDEFLLQALRAGAVGFLLKDSPPEEVVRAVLDAA 131 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPK------------------------DELPTG 158 + A ++ + P Sbjct: 132 ADRSRFSPDVLARLVRLAAAGGGTDGEADASGPGESGHHGEAAEGGTAGVSRGGADEPPS 191 Query: 159 IDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 + + + + + L +S T + +L + + + Sbjct: 192 APEGITEREWDVARLVARGLANQQIGEQLFMSVATVKTHLGRLYHKLQVTNRVQ 245 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 4/171 (2%) Query: 6 TLLIVEDETPLAEMHAEYIRHIP-GFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 +LI +DE + + + + + A N +A IE+F+P IL+D +P Sbjct: 3 KVLIADDEPKIRQGLKSVLEEMKLPITVCAEARNGMEALEKIEQFQPDFILMDICMPKLS 62 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 GI L EL + V+ + ++ +A++ GV +YL+KPIA E L + + + Sbjct: 63 GIQFLEELRKLDKNCPVIVISGFNEFSYAKQAIKLGVSEYLLKPIAEEELQAAVVKVTEE 122 Query: 125 KHMLESIDSASQKQIDEMFNAYA--RGEPKDELPTG-IDPLTLNAVRKLFK 172 + + +M R +E G + + Sbjct: 123 IKQKRKSEKFMELVKQQMIQNQDYLRDVFFNEWMEGKLSRFEWEEQARFLD 173 >UniRef50_C8VWU8 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWU8_DESAS Length = 216 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 12/213 (5%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ + ++I +D+ + + + P + +A N +A + +P + LLD + Sbjct: 1 MSK-IRVVIADDQNLICDGIRIILDSQPDMEVVGIADNGQKAVEFVSACQPDVALLDISM 59 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P GI L E+ + V+ T E + A R G YL+K + E+L + Sbjct: 60 PVMSGIEALKEIKVNYPKTVVLMLTTFDPDEYIIGAFRSGADGYLLKDMTAEKLVVAIRN 119 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPT-GIDPLTLNAVRKLFKEPGVQHT 179 + + K+ L G+ + + + Sbjct: 120 A------FNGNVTMPASIASRIIVHIHEDVKKNSLQDYGLTQREIE----IAGLMARGFS 169 Query: 180 AETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 E ++ L IS T + Y+ S+ + Sbjct: 170 NELISITLGISLGTVKNYISVIYSKLEANSRQE 202 >UniRef50_A9QDR4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=A9QDR4_PAESJ Length = 522 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 14/197 (7%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +L+V+DE + + I G+ AGN +A I+ KP L++ D +P Sbjct: 2 YKVLLVDDEIFVRKGLRNLIDWESLGYEICDEAGNGQEALEKIQLIKPDLVIADIRMPVL 61 Query: 64 RGINLLHELVQAHYPGD-VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF- 121 G+ L+ ++ + + + D + A+R GV DY++KPI L TL Sbjct: 62 DGLELIRKVTEEGVHSPTFIIVSGYHDFQYAQRALRYGVHDYILKPIDEAELETTLKALS 121 Query: 122 ----RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLF------ 171 ++ + + ++ + L + ++ + Sbjct: 122 GTLGLKKLATIAGDSLVTDSIVETLVQGQFSEADNGALCAALQMPEFSSFDYVLVELHAS 181 Query: 172 -KEPGVQHTAETVAQAL 187 + G + A+ +A + Sbjct: 182 AQSAGTEWQAKELAAVV 198 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 73/211 (34%), Gaps = 16/211 (7%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ LL+VEDE +A + + ++ + + L+LLD L Sbjct: 1 MSDAPHLLLVEDEPDVASFVQQGLNEEG--YEVSWVEAGRRGLDYARQGGIDLVLLDIRL 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 PD G+ + L ++ TA +E +R G DYL KP A++ L + Sbjct: 59 PDLSGLEVCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEA 118 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R + + + AR D + P + + L G + Sbjct: 119 LLRRVDRPSEPGRVEDGPL--VLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSR 176 Query: 181 ETVAQAL------------TISRTTARRYLE 199 +T+ Q + + RR L+ Sbjct: 177 DTIHQEVWGHDFDRGTNLIDVYVNYVRRKLD 207 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 6/190 (3%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGI 66 +L+V+DE + + Q+L A N A A +I P L+LLD ++P GI Sbjct: 5 ILVVDDEESIRISLGGILEDEG--YQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGI 62 Query: 67 NLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 L ++ VV + +ET +A R G FD++ KP + +++ T+ K Sbjct: 63 QTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKE 122 Query: 127 MLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQA 186 + + ++ + E + EL G A + E VA+A Sbjct: 123 LRKENEALRLSALKE--HEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARA 180 Query: 187 LTISRTTARR 196 I + RR Sbjct: 181 --IHHYSTRR 188 >UniRef50_C5VAN3 Two component transcriptional regulator, LuxR family n=2 Tax=Corynebacterium matruchotii RepID=C5VAN3_9CORY Length = 215 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 9/212 (4%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M + ++I +DE + A ++ I A +A + +R +P ++ +D + Sbjct: 1 MENLIRVVIADDEALIRAGLATILQASGDIEVIGEASTGEEALTVAQRLQPDVVCMDIRM 60 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G G+ + Q V+ T E V A+ G L+K + L + + R Sbjct: 61 PGGDGLEATRRIQQLEPAPAVIVITTFDMDEYVFGALEAGACGILLKDSSMTDLVEGVRR 120 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 + ++++ S +++ I E R + P L+ V +L + Sbjct: 121 AALGEGLVDA--SLTRRVIAEF---TRRKSIFTSSSEVLTPRELDCVAQL----CQGMSN 171 Query: 181 ETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A L + +T + +L ++ + Sbjct: 172 NEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQ 203 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 5/187 (2%) Query: 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYL 60 M+ +L+ +D+ ++ + GF+ I A + +A + +P L++LD + Sbjct: 1 MSVARRILVADDDPKTLKVLEHALT-AEGFAVI-KASDGQEALDLALSQRPDLVILDVMM 58 Query: 61 PDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTR 120 P G + + A ++ TA D R G DY+ KP L + Sbjct: 59 PKVDGFAVCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHA 117 Query: 121 FRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTA 180 +R L + ++ N R + + P + + + PG T Sbjct: 118 ILRRMPTLPESRTLRFGHLE--INKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTR 175 Query: 181 ETVAQAL 187 E++ + Sbjct: 176 ESLLARV 182 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 18/211 (8%) Query: 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLP 61 TA + +L+V+D + + + +PGF I AG+ +A + +P + ++D LP Sbjct: 7 TATIRILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLP 66 Query: 62 DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 G+ + + + +V T E + A++ G YL+K + + L + Sbjct: 67 RMNGVEAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAAIRSV 126 Query: 122 RQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAE 181 K + ++ A + + + L+ +R + + + Sbjct: 127 HAGKSRIPTV--------------VAERLAERMSGSELTARELDVLRLIVQ----GRSNR 168 Query: 182 TVAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A L IS T + ++ S+ + Sbjct: 169 EIAADLHISEATVKTHINNLLSKLGVSDRTQ 199 >UniRef50_C5SGD8 Two component transcriptional regulator, LuxR family n=2 Tax=Caulobacteraceae RepID=C5SGD8_9CAUL Length = 218 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 13/214 (6%) Query: 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNY 59 MTA PL +LIV+D E + GFS + A + A + E P ++L+D Sbjct: 1 MTADPLRILIVDDHALAREGLKAVLTSS-GFSVVGEAADGPAAIALTEALCPDVVLMDVR 59 Query: 60 LP-DGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTL 118 L D G+ + V+ T V EA+ G Y++K A + L + Sbjct: 60 LKGDMDGLEATRRIAALGLAARVLMLTLHDLPAYVREALAAGAAGYVLKDTAIDDLQAAI 119 Query: 119 TRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQH 178 R Q + L +D + A EP + PT + LT R++ Sbjct: 120 VRVAQGQTALP---------LDLVSAAMRAPEPVERDPTALSSLTGRE-REIVHLIAEGM 169 Query: 179 TAETVAQALTISRTTARRYLEYCASRHLIIAEIV 212 T + + ++L IS T + ++E ++ + Sbjct: 170 TNKEIGRSLGISPATVKAHVERLIAKLGVTDRTQ 203 >UniRef50_B5YAV6 Two-component response regulator n=2 Tax=Dictyoglomus RepID=B5YAV6_DICT6 Length = 496 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 76/188 (40%), Gaps = 7/188 (3%) Query: 5 LTLLIVEDETPLAEMHAEYI-RHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDG 63 +LI +DE + + + + + GF + A + +A + + P L ++D +P Sbjct: 3 YKVLIADDEPVIRQGLKKIVNWNALGFKIVGEAEDGVEALDKVRKLDPDLCVIDIRMPGM 62 Query: 64 RGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 G+ L+ E+ ++ ++ T + E +A+ GV Y++KP+ + L LT+ + Sbjct: 63 DGLELISEIRKSKSEIKIIILTGYPEFEYAQKAISLGVQSYMLKPVDPQILKDELTKIYE 122 Query: 124 RKHMLESIDSASQKQIDEMFNAYARGEPKDELPT----GIDPLTLNAVRKLFKEPGVQHT 179 + + S+++I E + ++ + + V L Sbjct: 123 DLERKKFLFEGSKEKILEKLLKGQISLTEKDVSKLLNFDLSWDSYQVV--LMSSDNENVD 180 Query: 180 AETVAQAL 187 ++Q L Sbjct: 181 KYEISQEL 188 >UniRef50_Q67JS2 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67JS2_SYMTH Length = 211 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 10/210 (4%) Query: 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPD 62 P+ +LIV+D L E + + A +A + +P +++LD LPD Sbjct: 1 MPIRVLIVDDHELLREGLKSLLSREEDMEVVGEAAGGREAVALCRSLRPDVVVLDARLPD 60 Query: 63 GRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 G+ + +L + V+ T SD + V AVR G Y++K + L +++ Sbjct: 61 VDGVEVCRQLQEEMPEVAVLMLTTFSDSDLVLGAVRAGARGYVVKDVLGMDLKRSIRAVA 120 Query: 123 QRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAET 182 + + K + + E ++ L + + +T Sbjct: 121 R------GEVAMDPKVVGYLMQQMRSPSADKEERIPLNRQQL----AIIRLVAQGYTNRE 170 Query: 183 VAQALTISRTTARRYLEYCASRHLIIAEIV 212 +A+ + +S T + YL R + + Sbjct: 171 IAERMFLSEKTVKGYLAEAMRRMGVKNRVE 200 >UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synechococcus RepID=Q0ICD5_SYNS3 Length = 295 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 10/205 (4%) Query: 7 LLIVEDETPLAEMHAEYIRHIPGFSQILLAG-NLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+D+ E+ + ++A ++ + + L++LD LPD G Sbjct: 67 VLLVDDDP---ELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDFDG 123 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 + + L + V+ TA D++ +A+ G DY+ KP L + +R Sbjct: 124 LEICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRG 183 Query: 126 HMLESIDSASQKQI-DEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 + Q ++ D N R + E + + + L G + + Sbjct: 184 TFAAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNIL 243 Query: 185 QALTIS-----RTTARRYLEYCASR 204 + + + T Y+ Y + Sbjct: 244 EGVWGAPFVGDPNTLDVYMGYLRRK 268 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 12/207 (5%) Query: 6 TLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRG 65 +L+V+DE + + + + +S++ A + +A + K +ILLD LP G Sbjct: 13 RVLVVDDEKMIVKGLKFSL--MQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDG 70 Query: 66 INLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 +++ ++ + ++ TA D + G DY+ KP + + +R Sbjct: 71 LSVCQQIRE-FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN 129 Query: 126 HMLESIDSASQ--KQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETV 183 + + S K D + +R + + + + L PG ++ + + Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 184 AQAL------TISRTTARRYLEYCASR 204 +A+ +R T ++ + Sbjct: 190 LKAVWGQDYTGDAR-TVDVHMRRLREK 215 >UniRef50_C4RI73 Two-component system response regulator n=6 Tax=Actinomycetales RepID=C4RI73_9ACTO Length = 217 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 87/208 (41%), Gaps = 10/208 (4%) Query: 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGR 64 + +++V+D+ + +R P + A + A+A I R +P ++LLD +PD Sbjct: 2 VRIVVVDDDALVRSGLRLILRVAPDIEVVATA-SGAEAIDEITRHRPDVVLLDIRMPDVD 60 Query: 65 GINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 G+ +L ++ +P V T E ++ A+R G +++K E L Q + Sbjct: 61 GLTVLRQVRAMPHPPTVAMLTTFDADEYITTALRIGAAGFILKDTHPEHLAQLVRALAAG 120 Query: 125 KHMLESIDSASQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVA 184 +L S+ +D R E ++ + I LT + R++ + + Sbjct: 121 AVVLSPK--VSRTVVD------WRVENGEDAASAIARLT-DREREILVHVADGLSNAEIG 171 Query: 185 QALTISRTTARRYLEYCASRHLIIAEIV 212 + +S T + ++ ++ + + + Sbjct: 172 TRMYLSGGTVKDHVSAILTKLKVTSRVQ 199 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.178 0.561 Lambda K H 0.267 0.0544 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,664,467,191 Number of Sequences: 3077464 Number of extensions: 88425813 Number of successful extensions: 463247 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34246 Number of HSP's successfully gapped in prelim test: 9181 Number of HSP's that attempted gapping in prelim test: 358102 Number of HSP's gapped (non-prelim): 50033 length of query: 226 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 102 effective length of database: 658,790,820 effective search space: 67196663640 effective search space used: 67196663640 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 92 (39.6 bits)