16/01/2012 07:04:07 : INFO  : Run start: Mon Jan 16 07:04:05 GMT 2012
16/01/2012 07:04:12 : INFO  : Initialised job
16/01/2012 07:04:14 : INFO  : Renaming log file 'phyre2_20120116_070404.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/542487a114630b92/phyre_20120116_070404.log'
16/01/2012 07:04:15 : INFO  : Initialised job:
Sequence
>batch____
MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGG
VLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTIAALTLAAFFLGIPVFFDV
GFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPPHPGPVAAAGLLHADIGWLTI
IGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLAPASEEGATKLSDKINPPGVALV
TSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGSPMVALMIALVLAFWLLALRRGWSL
QHTSDIMGSALPTAAVVILVTGAGGVFGKVLVESGVGKALANMLQMIDLPLLPAAFIISL
ALRASQGSATVAILTTGGLLSEAVMGLNPIQCVLVTLAACFGGLGASHINDSGFWIVTKY
LGLSVADGLKTWTVLTTILGFTGFLITWCVWAVI

16/01/2012 07:04:17 : INFO  : Checked sequence
16/01/2012 07:04:21 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 07:04:22 : INFO  : PSI-BLAST 3 iterations
16/01/2012 07:07:27 : INFO  : PSI-BLAST 5 iterations
16/01/2012 07:10:38 : INFO  : Finished PSI-BLAST
16/01/2012 07:10:40 : INFO  : Running Buildali to generate a3m file
16/01/2012 07:24:49 : INFO  : Converting to HMM
16/01/2012 07:24:56 : INFO  : Calibrating HMM
16/01/2012 07:25:16 : INFO  : Searching HMM database
16/01/2012 07:36:05 : INFO  : Finished buildali
16/01/2012 07:36:07 : INFO  : Predicting secondary structure
16/01/2012 07:36:15 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 07:36:16 : INFO  : Predicting Disordered regions
16/01/2012 07:36:20 : INFO  : Predicted Disorder (Disopred)
16/01/2012 07:36:21 : INFO  : Running memsat_svm check
16/01/2012 07:39:30 : INFO  : Running memsat_svm full
16/01/2012 07:44:12 : INFO  : Predicted Transmembrane (memsat_svm) ID '542487a114630b92'
16/01/2012 07:44:13 : INFO  : Initialising fold library search
16/01/2012 07:44:16 : INFO  : Initialised search input
16/01/2012 07:44:18 : INFO  : Building Ensemble models
16/01/2012 07:44:22 : INFO  : Building hh.c2w8aC_.model.1.pdb
16/01/2012 07:44:35 : INFO  : Building c2w8aC_.1.pdb
16/01/2012 07:44:48 : INFO  : Building c3hd6A_.2.pdb
16/01/2012 07:45:00 : INFO  : Building c2b2hA_.3.pdb
16/01/2012 07:45:13 : INFO  : Building c3b9yA_.4.pdb
16/01/2012 07:45:26 : INFO  : Building c2xutC_.5.pdb
16/01/2012 07:45:40 : INFO  : Building d2a65a1.6.pdb
16/01/2012 07:45:54 : INFO  : Building d1xmea1.7.pdb
16/01/2012 07:46:06 : INFO  : Building c3eh4A_.8.pdb
16/01/2012 07:46:19 : INFO  : Building c2vofA_.9.pdb
16/01/2012 07:46:32 : INFO  : Building c2kncA_.10.pdb
16/01/2012 07:46:45 : INFO  : Building c2oarA_.11.pdb
16/01/2012 07:46:58 : INFO  : Building d2oara1.12.pdb
16/01/2012 07:47:10 : INFO  : Building c2ht2B_.13.pdb
16/01/2012 07:47:22 : INFO  : Building c2bbjB_.14.pdb
16/01/2012 07:47:35 : INFO  : Building d2nwwa1.15.pdb
16/01/2012 07:47:46 : INFO  : Building c2gofA_.16.pdb
16/01/2012 07:47:58 : INFO  : Building c1pi7A_.17.pdb
16/01/2012 07:48:11 : INFO  : Building c1pjeA_.18.pdb
16/01/2012 07:48:23 : INFO  : Building c1pi8A_.19.pdb
16/01/2012 07:48:39 : INFO  : Building c2gohA_.20.pdb
16/01/2012 07:49:04 : INFO  : Finished HH model building
16/01/2012 07:49:05 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 07:50:08 : INFO  : html domain output complete ID '542487a114630b92'
16/01/2012 08:10:49 : INFO  : Run end  : Mon Jan 16 08:10:49 GMT 2012
