BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (289 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobac... 602 e-171 UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular or... 498 e-139 UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salm... 400 e-110 UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobact... 320 4e-86 UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonu... 313 6e-84 UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=So... 251 2e-65 UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=S... 242 1e-62 UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterob... 211 3e-53 UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mir... 201 2e-50 UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia... 195 1e-48 UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Pr... 191 3e-47 UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=S... 159 1e-37 UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=D... 147 3e-34 UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=P... 143 9e-33 UniRef50_P28816 Transposon Tn10 tetD protein n=29 Tax=root RepID... 140 6e-32 UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=E... 139 1e-31 UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escheri... 135 2e-30 UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=... 132 1e-29 UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salm... 130 4e-29 UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmanie... 127 3e-28 UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Entero... 127 5e-28 UniRef50_A2TEG4 AraC-like protein (Fragment) n=1 Tax=Serratia ma... 125 2e-27 UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria ... 124 3e-27 UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA... 117 4e-25 UniRef50_A8GD44 Transcriptional regulator, AraC family n=9 Tax=E... 116 9e-25 UniRef50_P43463 HTH-type transcriptional activator aarP n=3 Tax=... 115 2e-24 UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwa... 114 3e-24 UniRef50_A8GHJ0 Transcriptional regulator, AraC family n=1 Tax=S... 114 5e-24 UniRef50_D1NY75 Multiple antibiotic resistance protein MarA n=5 ... 113 6e-24 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 112 2e-23 UniRef50_P0ACH6 Multiple antibiotic resistance protein marA n=13... 110 4e-23 UniRef50_C8QA11 Transcriptional regulator, AraC family n=1 Tax=P... 110 5e-23 UniRef50_A4WA37 Transcriptional regulator, AraC family n=3 Tax=E... 110 5e-23 UniRef50_Q52620 Regulatory protein pqrA n=6 Tax=Enterobacteriace... 110 6e-23 UniRef50_Q48413 Transcriptional activator ramA n=51 Tax=Bacteria... 105 2e-21 UniRef50_D0ZAS7 Transcriptional regulator, AraC family n=2 Tax=E... 103 6e-21 UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmone... 103 8e-21 UniRef50_B2Q528 Putative uncharacterized protein n=1 Tax=Provide... 103 1e-20 UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATC... 103 1e-20 UniRef50_UPI0001A4290C hypothetical protein PcarcW_09175 n=1 Tax... 102 2e-20 UniRef50_D2BST7 Transcriptional regulator, AraC family n=2 Tax=E... 100 5e-20 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 100 9e-20 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 100 9e-20 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 99 1e-19 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 99 2e-19 UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escheri... 99 2e-19 UniRef50_A6TN59 Helix-turn-helix-domain containing protein, AraC... 96 1e-18 UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevi... 96 1e-18 UniRef50_B2VHH7 Putative transcriptional regulator n=1 Tax=Erwin... 94 5e-18 UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_E... 94 6e-18 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 94 8e-18 UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Cl... 93 8e-18 UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Ba... 93 9e-18 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 93 1e-17 UniRef50_C5BDV7 Transcriptional regulator, AraC family n=45 Tax=... 93 1e-17 UniRef50_C8QG57 Transcriptional regulator, AraC family n=1 Tax=P... 93 1e-17 UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX 92 2e-17 UniRef50_A8FAK8 Possible AraC family transcriptional regulator n... 92 2e-17 UniRef50_Q180J9 AraC-family transcriptional regulator n=4 Tax=Cl... 91 4e-17 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 91 4e-17 UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=D... 91 5e-17 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 91 7e-17 UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=K... 90 7e-17 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 90 8e-17 UniRef50_C8Q9G3 Transcriptional regulator, AraC family n=1 Tax=P... 90 9e-17 UniRef50_UPI0001A437FB DNA-binding transcriptional activator Mar... 90 9e-17 UniRef50_Q2B3U5 Transcriptional regulator (AraC/XylS family) pro... 90 1e-16 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 90 1e-16 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 89 1e-16 UniRef50_C5ERZ6 Right origin-binding protein n=1 Tax=Clostridial... 89 2e-16 UniRef50_A4BA46 Transcriptional regulator, AraC family protein n... 89 2e-16 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 88 3e-16 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 88 3e-16 UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC... 87 5e-16 UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=... 87 5e-16 UniRef50_C1FM43 AraC-family transcriptional regulator n=2 Tax=Cl... 87 8e-16 UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp... 87 8e-16 UniRef50_C0D9U5 Putative uncharacterized protein n=1 Tax=Clostri... 87 9e-16 UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=B... 87 9e-16 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 86 1e-15 UniRef50_UPI0001789CA8 transcriptional regulator, AraC family n=... 86 2e-15 UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. ... 86 2e-15 UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reineke... 85 3e-15 UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=C... 85 3e-15 UniRef50_A9KM10 Transcriptional regulator, AraC family n=1 Tax=C... 84 4e-15 UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersini... 84 5e-15 UniRef50_C8QF79 Transcriptional regulator, AraC family n=1 Tax=P... 84 5e-15 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 84 6e-15 UniRef50_B1HZR5 Transcriptional regulator (AraC/XylS family) n=1... 84 6e-15 UniRef50_C9XKB1 AraC-family transcriptional regulator n=18 Tax=C... 83 1e-14 UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ... 83 1e-14 UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC ... 82 2e-14 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 82 2e-14 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 82 2e-14 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 82 3e-14 UniRef50_A6M0H0 Transcription activator, effector binding n=2 Ta... 81 3e-14 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 81 4e-14 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 81 4e-14 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 81 4e-14 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 81 5e-14 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 81 5e-14 UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC... 81 5e-14 UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Cl... 81 5e-14 UniRef50_C4X996 Regulatory protein n=4 Tax=Klebsiella RepID=C4X9... 81 5e-14 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 80 6e-14 UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=B... 80 6e-14 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 80 9e-14 UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=... 80 1e-13 UniRef50_C6LAX2 Regulatory protein SoxS n=1 Tax=Bryantella forma... 80 1e-13 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 79 1e-13 UniRef50_B0MIQ9 Putative uncharacterized protein n=1 Tax=Anaeros... 79 1e-13 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 79 1e-13 UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2... 79 2e-13 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 79 2e-13 UniRef50_P26950 F1 operon positive regulatory protein n=19 Tax=Y... 79 2e-13 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 79 2e-13 UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostri... 79 2e-13 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 79 3e-13 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 78 3e-13 UniRef50_Q12PA0 Transcriptional regulator, AraC family n=1 Tax=S... 78 3e-13 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 78 3e-13 UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ... 78 3e-13 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 78 4e-13 UniRef50_A8MLY7 Transcriptional regulator, AraC family n=1 Tax=A... 78 4e-13 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 78 4e-13 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 78 4e-13 UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Ba... 77 5e-13 UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escheri... 77 5e-13 UniRef50_D1P760 F1 operon positive regulatory protein n=1 Tax=Pr... 77 7e-13 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 77 7e-13 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 77 7e-13 UniRef50_A9IAC9 Transcriptional regulator, AraC family n=1 Tax=B... 77 8e-13 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 77 8e-13 UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=... 77 9e-13 UniRef50_C1FTY8 Transcriptional regulator, AraC family n=16 Tax=... 77 1e-12 UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicu... 77 1e-12 UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=C... 76 1e-12 UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Er... 76 1e-12 UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostri... 76 1e-12 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 76 2e-12 UniRef50_UPI0001973804 AraC-family transcriptional regulator n=1... 76 2e-12 UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=C... 75 2e-12 UniRef50_B8K8Q9 Transcriptional regulator, AraC family n=1 Tax=V... 75 2e-12 UniRef50_D1PQS2 Transcriptional regulator, AraC family n=1 Tax=S... 75 2e-12 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 75 2e-12 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 75 2e-12 UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri... 75 2e-12 UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C... 75 3e-12 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 75 3e-12 UniRef50_O31456 Uncharacterized HTH-type transcriptional regulat... 75 3e-12 UniRef50_A6TGX0 Regulation of superoxide response regulon n=6 Ta... 75 4e-12 UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=S... 75 4e-12 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 74 5e-12 UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=C... 74 6e-12 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 74 6e-12 UniRef50_UPI0001789679 transcriptional regulator, AraC family n=... 74 6e-12 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 74 7e-12 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 74 7e-12 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 74 8e-12 UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptoc... 74 8e-12 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 74 8e-12 UniRef50_Q63B02 Transcriptional regulator, AraC family n=72 Tax=... 74 8e-12 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 73 9e-12 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 73 1e-11 UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=F... 73 1e-11 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 72 2e-11 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 72 2e-11 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 72 2e-11 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 72 2e-11 UniRef50_A6FWZ8 Transcriptional regulator, AraC family protein n... 72 2e-11 UniRef50_A5W8X4 Transcriptional regulator, AraC family n=13 Tax=... 72 2e-11 UniRef50_UPI0001C3596C AraC family transcriptional regulator n=1... 72 2e-11 UniRef50_C7G9P1 AraC-type sugar metabolism regulator n=2 Tax=Lac... 72 2e-11 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 72 2e-11 UniRef50_C0BW87 Putative uncharacterized protein n=2 Tax=Clostri... 72 3e-11 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 71 4e-11 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 71 4e-11 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 71 4e-11 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 71 4e-11 UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecali... 71 4e-11 UniRef50_C1FNH9 Transcriptional regulator, AraC family n=11 Tax=... 71 4e-11 UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=... 71 5e-11 UniRef50_B8K6M7 Transcriptional regulator, AraC/XylS family n=1 ... 70 6e-11 UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Fi... 70 6e-11 UniRef50_D0LEJ4 Helix-turn-helix-domain containing protein AraC ... 70 7e-11 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 70 7e-11 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 70 8e-11 UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=H... 70 8e-11 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 70 9e-11 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 70 9e-11 UniRef50_C6MNU8 Transcriptional regulator, AraC family n=1 Tax=G... 70 1e-10 UniRef50_A5Z7H2 Putative uncharacterized protein n=1 Tax=Eubacte... 70 1e-10 UniRef50_C2LSM7 Transcriptional regulator n=5 Tax=Streptococcus ... 70 1e-10 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 70 1e-10 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 69 1e-10 UniRef50_A8RSA7 Putative uncharacterized protein n=4 Tax=Clostri... 69 1e-10 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 69 2e-10 UniRef50_A6M032 Transcription activator, effector binding n=19 T... 69 2e-10 UniRef50_UPI000178A094 transcriptional regulator, AraC family n=... 69 2e-10 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 69 2e-10 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 69 3e-10 UniRef50_Q6LLD3 Hypothetical bacterial regulatory helix-turn-hel... 69 3e-10 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 68 3e-10 UniRef50_UPI0001C3658F AraC family transcriptional regulator n=1... 68 4e-10 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 68 4e-10 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 68 4e-10 UniRef50_Q2RX05 Transcriptional regulator, AraC family n=2 Tax=R... 68 4e-10 UniRef50_A3SRS4 Transcriptional regulator, AraC family protein n... 68 4e-10 UniRef50_C0FW59 Putative uncharacterized protein n=2 Tax=Clostri... 68 4e-10 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 68 4e-10 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 68 4e-10 UniRef50_C8ZY41 AraC family transcriptional regulator n=1 Tax=En... 68 5e-10 UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=C... 68 5e-10 UniRef50_C7HA83 Transcriptional regulator, AraC family n=1 Tax=F... 68 5e-10 UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=C... 67 6e-10 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 67 6e-10 UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID... 67 7e-10 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 67 7e-10 UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=C... 67 7e-10 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 67 7e-10 UniRef50_C7QAN2 Transcriptional regulator, AraC family n=1 Tax=C... 67 7e-10 UniRef50_A6LX85 Transcription activator, effector binding n=2 Ta... 67 7e-10 UniRef50_UPI0001C35507 AraC family transcriptional regulator n=1... 67 8e-10 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 67 8e-10 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 67 8e-10 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 67 8e-10 UniRef50_A8W051 Homocysteine S-methyltransferase n=1 Tax=Bacillu... 67 8e-10 UniRef50_C2LFG5 Transcriptional regulator n=6 Tax=Enterobacteria... 67 8e-10 UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n... 67 9e-10 UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coproco... 67 9e-10 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 67 9e-10 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 67 1e-09 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 67 1e-09 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 66 1e-09 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 66 1e-09 UniRef50_C9XX01 Putative uncharacterized protein n=1 Tax=Cronoba... 66 1e-09 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 66 1e-09 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 66 1e-09 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 65 2e-09 UniRef50_A3T2N4 Helix-turn-helix, AraC type: AraC protein n=3 Ta... 65 2e-09 UniRef50_B6FV70 Putative uncharacterized protein n=3 Tax=Clostri... 65 2e-09 UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID... 65 2e-09 UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=C... 65 2e-09 UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=E... 65 2e-09 UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 T... 65 2e-09 UniRef50_B2IKR9 Transcriptional regulator, AraC family n=4 Tax=R... 65 2e-09 UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC ... 65 3e-09 UniRef50_A9KRM0 Transcriptional regulator, AraC family n=3 Tax=F... 65 3e-09 UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collins... 65 3e-09 UniRef50_B1KXK2 Transcriptional regulator, AraC family n=6 Tax=C... 65 3e-09 >UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobacteriaceae RepID=ROB_ECO57 Length = 289 Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR Sbjct: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 >UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular organisms RepID=C4X304_KLEPN Length = 289 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 235/289 (81%), Positives = 264/289 (91%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLL WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQF+ TPALYRRSP+WS+FG+RPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFT+P+H+F+TL T L+GVTQSY+C LE+ISDFR++MR QFW DFLGN+P+IPPVLYG Sbjct: 121 GEFTLPKHEFITLPPTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+E RPS +KDDEQEVFYTTAL + A+G++ HPV L+GGEYVMFTYEGLGTG+QEFI Sbjct: 181 LHEPRPSLEKDDEQEVFYTTALTPEMANGHLQHAHPVTLEGGEYVMFTYEGLGTGLQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPML+LTRRKG DIER+YP ++++ PI LRCE LIPIRR Sbjct: 241 LTVYGTCMPMLHLTRRKGLDIERFYPEDESRDQATPIQLRCEYLIPIRR 289 >UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190DF59 Length = 211 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 185/206 (89%), Positives = 198/206 (96%) Query: 84 SQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQ 143 +QQTFTRAFKKQF+QTPALYRRSPEWSAFGIRPPLRLGEFT+PEH+FVTLEDTPL+GVTQ Sbjct: 6 TQQTFTRAFKKQFSQTPALYRRSPEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQ 65 Query: 144 SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALA 203 SYSCSLEQISDFRHEMR QFWHDFLG++PTIPPVLYGLNETRPS +KDDEQEVFYTTAL Sbjct: 66 SYSCSLEQISDFRHEMRVQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTTALP 125 Query: 204 QDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIER 263 Q+QADGYV + HPV+LQGGEYVMFTYEGLGTGVQ+FILTVYGTCMPMLNLTRRKGQDIER Sbjct: 126 QEQADGYVQSAHPVLLQGGEYVMFTYEGLGTGVQDFILTVYGTCMPMLNLTRRKGQDIER 185 Query: 264 YYPAEDAKAGDRPINLRCELLIPIRR 289 YYP+ED K GDRPINLRCE LIPIRR Sbjct: 186 YYPSEDTKTGDRPINLRCEFLIPIRR 211 >UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobacteriaceae RepID=B4EY53_PROMH Length = 300 Score = 320 bits (820), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 166/298 (55%), Positives = 212/298 (71%), Gaps = 10/298 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL WL+ +LDQPLSLDNVA KAGYSKWHLQRMFK+VTG AIG+YIR+RRLS Sbjct: 1 MDQTNIIRDLLAWLDNNLDQPLSLDNVATKAGYSKWHLQRMFKEVTGQAIGSYIRSRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF +TPALYRRS EW A GI PP++L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFDRTPALYRRSDEWCAVGICPPIKL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ ++V L + LIG+ Q+ S +LEQ ++ +MR FW +++ TIP +YG Sbjct: 121 DPQPLPKWEYVQLPEIKLIGIEQTCSHTLEQWANACSDMRQTFWQNYITKVNTIPHEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVL--TGHPVMLQGGEYVMFTYEGLGT--GV 236 L+ T+ S + +DEQ V YTTA+ A +V T + V+L+ G+Y+ F +EG + Sbjct: 181 LHHTQHSDEHEDEQRVIYTTAVEPAYA-SFVEDDTAYEVILEAGDYIRFDFEGEAKRGAM 239 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAE---DAKAGDRPIN--LRCELLIPIRR 289 QEF+ +YG C+P + LTRRKG DIE+YY E D P + R E IPI+R Sbjct: 240 QEFLFLIYGVCLPTMGLTRRKGHDIEKYYLKEVHYDNVMTAEPQDHIKRFEYYIPIKR 297 >UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TW49_9ENTR Length = 305 Score = 313 bits (801), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 163/296 (55%), Positives = 201/296 (67%), Gaps = 7/296 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL W++ HLDQPL LDNVAAKAGYSKWHLQRMFK++T AIG+YIRARRLS Sbjct: 1 MDQNNIIRDLLYWIDTHLDQPLFLDNVAAKAGYSKWHLQRMFKNITQQAIGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF TPALYRRS +W A G++PP+ L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFGITPALYRRSEDWCATGMQPPITL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E +P FVTL L+G+ Q+ S LE+ S EMR FW + A IP +YG Sbjct: 121 EEQKLPNVSFVTLTPKHLMGIEQTCSYILEEWSTACAEMRKHFWQYYQDKAKNIPNEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT--GVQE 238 L+ S +KD+EQ V Y TA+ AD H ++++GG+Y FT+EG T +Q+ Sbjct: 181 LHRVVHSSEKDEEQTVLYITAVEPQYADNKNNLYHSIIIEGGDYARFTFEGKPTKSDLQQ 240 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYY---PAEDAKAGDRPIN--LRCELLIPIRR 289 F+ +YG MP LNLTRR G DIE Y+ P D P N + + +PI+R Sbjct: 241 FLYMIYGVYMPNLNLTRRAGHDIEHYHLKDPNNPECNYDNPENHMVAFDYFVPIKR 296 >UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ1_SODGM Length = 201 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 120/191 (62%), Positives = 146/191 (76%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGII+DLL WLEGHLD PL+L+ VA ++GYSKWHLQR FK TG AIGAYIRARRLS Sbjct: 1 MDQAGIIQDLLSWLEGHLDTPLTLNRVAERSGYSKWHLQRKFKLATGQAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++ +ALRLT+R + DIALQY FDSQQTFTR FKKQF QTPALYRRS +W G+ PP R Sbjct: 61 RAVLALRLTSRSVADIALQYGFDSQQTFTRPFKKQFIQTPALYRRSRKWHFLGMYPPYRF 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ +FVTL+ LIG +QSY+C+LEQ+S++R +R FW FL PT PPVLYG Sbjct: 121 DSRPLPQAEFVTLQVMTLIGTSQSYTCTLEQLSEYRTNLRSHFWRQFLAAMPTKPPVLYG 180 Query: 181 LNETRPSQDKD 191 L+ R S+ + Sbjct: 181 LSPHRRSRHEK 191 >UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=Serratia proteamaculans 568 RepID=A8G9B3_SERP5 Length = 292 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/288 (45%), Positives = 178/288 (61%), Gaps = 5/288 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +I LL W+E +LDQPL+LD++AAK+GYSKWHLQR+FK++TG +G Y R RRL+ Sbjct: 1 MYQQQVITALLAWIEQNLDQPLTLDDIAAKSGYSKWHLQRLFKELTGEILGTYARRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A LRLT + IA +Y+FDSQQTFTR FKKQF PA YRRS +WS G++PPLRL Sbjct: 61 AAARELRLTNHGVAFIADKYQFDSQQTFTRCFKKQFGMPPAGYRRSTDWSGLGMQPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + +P+ + +TL LIG TQ SC+L Q+ ++E+R W + V+YG Sbjct: 121 MDAPLPQAEIITLPAMQLIGHTQHRSCTLGQLLHSKNELRQHAWRQMMPKEAETLAVVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L Q + YT ALA ++A+ G V+++ G+Y FTY+G +Q FI Sbjct: 181 LTSLEADSRLRGRQRMAYTLALADERAE-----GERVLIEQGDYASFTYQGQVEELQNFI 235 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y T +PM+ RR G+DIER+YPA +RCE LIPIR Sbjct: 236 ARLYDTAIPMMKAIRRPGKDIERFYPALGGVCCAGGTAIRCEYLIPIR 283 >UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B6XK96_9ENTR Length = 310 Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/266 (41%), Positives = 159/266 (59%), Gaps = 4/266 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK TG A+GAYIRARRLS Sbjct: 17 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKTQTGLALGAYIRARRLS 76 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G R PLR Sbjct: 77 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFRLPLRE 136 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + V L+D L+G+T Y+ + + + E+R Q+W +FL + LY Sbjct: 137 SKELEAHVQLVELKDIHLVGMTHRYTQGINEWNLKTEELRRQYWKNFLDKNKLVAQNLYA 196 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL--GTGVQE 238 ++ + D+E Y+TA ++ + +M+ G Y+ ++G GT + Sbjct: 197 IHGVDTTS--DEEGRFLYSTAFEENALEVIPPLTKKLMVPAGNYLQIKFKGSLQGTDYND 254 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERY 264 I TVYG + +++ R G DIE Y Sbjct: 255 IIYTVYGKVLAEMDIARGLGADIEHY 280 >UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mirabilis RepID=C2LM40_PROMI Length = 298 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/272 (40%), Positives = 160/272 (58%), Gaps = 11/272 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +++D+++W+E +LD LSLD +A K+GY+KWH QR+FK TG ++G Y+ ARRLS Sbjct: 1 MLQENVVKDIIVWIEQNLDSRLSLDIIAEKSGYTKWHFQRLFKAYTGISLGKYVLARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-IRPPLR 119 A ALR+T +LDI+L+Y FDSQQTF RAFKKQF TP+ YR+ W I P L Sbjct: 61 CGAYALRITRSSLLDISLKYHFDSQQTFCRAFKKQFNITPSEYRKKQGWDISELIFPALE 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 E +++ +TL LIG+ Y+ ++ + + + R +FW FL TIP +Y Sbjct: 121 TVELK-AKYEVMTLPSKELIGMAHQYNKNISAWNYDKKKFRKEFWKKFLKEIHTIPTEMY 179 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQ--ADGYVLTGHPVMLQGGEYVMFTYEGLG---- 233 + R S D+ YTTA++++Q + + T V L G+Y++ T+E Sbjct: 180 ATH--RASAGSLDDTTYIYTTAVSKEQLTSSANISTMSNVELPNGKYLVITFEMDNILDS 237 Query: 234 -TGVQEFILTVYGTCMPMLNLTRRKGQDIERY 264 TG + I TVY +P +NL RR G DIERY Sbjct: 238 LTGYDDIIYTVYTKVLPKMNLLRRAGPDIERY 269 >UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia RepID=D1P487_9ENTR Length = 295 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 105/266 (39%), Positives = 153/266 (57%), Gaps = 4/266 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK+ TG A+G+YIRARRLS Sbjct: 1 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKNQTGLALGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G PLR Sbjct: 61 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFCLPLRE 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + + V L + L+G+T Y+ + + + E+R Q+W FL + LY Sbjct: 121 SKELQAQVQLVELPEINLLGMTHRYTQGINEWNLKTEELRKQYWRTFLDKNKLVAQNLYA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG--LGTGVQE 238 ++ + ++E Y+TA + + + G Y+ + G GT + Sbjct: 181 IHGVDTA--SEEEGRFLYSTAFNEQDMATVPPFSKSLKVPAGNYLEIKFLGNLQGTDYND 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERY 264 I T YG + +++ R G DIE Y Sbjct: 239 IIYTAYGKVLAEMDIVRSTGCDIEHY 264 >UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Proteus RepID=B4EVW5_PROMH Length = 304 Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 157/283 (55%), Gaps = 1/283 (0%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I++LL+W+E +L++PL LD+VA K+GY+KWHLQR+FK TG + +YIR RRL+K+A Sbjct: 21 VIKELLLWIEVNLEKPLLLDDVAIKSGYTKWHLQRVFKQATGLTLASYIRGRRLTKAATE 80 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 LRLT P+L IAL+Y+FDSQQ+FTR FK F TP+ YR+ + +PP+ + Sbjct: 81 LRLTKLPVLTIALRYQFDSQQSFTRRFKAVFGVTPSEYRKVDVLCSDNFQPPINFEVTDL 140 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 P + L ++ L + Y CS+E I ++R+QFW+DFL L + Sbjct: 141 PIPNIIELPESFLYVIQYQYFCSIEDIGKLHEDIRHQFWNDFLLYTDKNFTESSVLISYQ 200 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 P+ + D+ ++ Y L + GG YV F ++G ++F + +Y Sbjct: 201 PNTLRKDKIQIDYEIGLNNLDHFTRPRGFRKKAIAGGRYVRFQFKGTLEEYKQFAIKIYF 260 Query: 246 TCMPMLNLTRRKGQDIERYYPAE-DAKAGDRPINLRCELLIPI 287 +P L L RR G DIE Y E D+ + P L + +PI Sbjct: 261 YTLPALGLCRRLGPDIENYICIETDSDIMELPKTLEIDYYVPI 303 >UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GJ26_SERP5 Length = 288 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 154/289 (53%), Gaps = 12/289 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q IR+LL+W+E +L PLSLD V+AK+GYSKW+LQRMFK TG ++ +YIRARRL + Sbjct: 4 QENHIRELLVWIEDNLTNPLSLDIVSAKSGYSKWYLQRMFKTQTGLSLASYIRARRLYLA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-- 120 A ALR T + ILDI+++Y+FD+QQTF+R FKK FA++P++YR + + + L Sbjct: 64 AFALRFTQKTILDISIEYQFDNQQTFSRCFKKHFAESPSVYRHARKQDFSHLVRSLSANH 123 Query: 121 -GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 G+ + K V + G + +Y + + +R + F + + P + Y Sbjct: 124 PGDIQVDRIK-VAKGQYAIKGKSYAYHLDIADLDKSHLHIRSKIREQFYQSVASRPALTY 182 Query: 180 GLNETRPSQDKDDEQ-EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 L + P D EQ V Y +A+D V P G+Y F Y G + + Sbjct: 183 ALTQFIP----DGEQVRVEYALGVAEDCPTSDVAGLEPWPEIHGDYCRFCYSGKPVALHD 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ +Y +P L L RR G D+ + + + + + L + L+P+ Sbjct: 239 HVVQIYTQALPELGLARRVGPDLTMFNYSLNER---EELQLELQHLVPV 284 >UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=Dickeya RepID=C6C946_DICDC Length = 313 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 135/263 (51%), Gaps = 10/263 (3%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I DL+ W+E HL+ PL + +V AK+GYSKWHLQRMFK TG ++G YIR RRLS++AV L Sbjct: 12 IADLVGWIESHLESPLMISDVTAKSGYSKWHLQRMFKKETGISLGTYIRNRRLSQAAVEL 71 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 +LT++ I ++AL+Y FDSQQ+FTR FKK F +P YR+ W ++P LRL +P Sbjct: 72 KLTSQTIQEVALRYCFDSQQSFTRTFKKHFGTSPGHYRKQSSWDFSSLQPSLRLNVNAVP 131 Query: 127 EHKFVTLEDTPLIGVTQSYSC---SLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 + V L P Y+ L Q++D R W G + +Y + Sbjct: 132 VPEVVALPRLPANRCHFEYTQVVDDLVQVNDI--ARRPVLWEKACGRSHAADVSIYVSST 189 Query: 184 TRPSQDKDDEQ-EVFYTTALAQDQADGYVLTGHPVMLQGGE---YVMFTYEGLGTGVQEF 239 P ++ Q V Y + A+ + + QG + Y+ F + G Q F Sbjct: 190 VYPDDNRIKRQVRVNYDVGVIT-HAEELLADDDGIGEQGTDVDSYLRFRFIGNLQEYQTF 248 Query: 240 ILTVYGTCMPMLNLTRRKGQDIE 262 + +Y +P T+ D+E Sbjct: 249 LRAIYHHILPGRPYTKMGNNDVE 271 >UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBQ6_9ENTR Length = 288 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 21/267 (7%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I DL+ W+E +L L++D ++ K+GYSKWH+QRMFK++TG + +Y R RRL+ SA+AL Sbjct: 11 INDLVDWIEANLTDELNIDLISLKSGYSKWHMQRMFKEMTGQTLASYTRKRRLTMSAMAL 70 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF--T 124 RLT P++DIA+++ FD+QQ FTR FK F+ TP YRR PE L+L +F Sbjct: 71 RLTRMPLIDIAVRFGFDNQQNFTRVFKNHFSLTPGAYRRIPE---------LQLKDFHSR 121 Query: 125 MP-EHKFVT--LEDTP---LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 +P +H++V L + P L G + C + ++ Q DF+ A Sbjct: 122 IPTQHRWVDVRLAEKPELRLCGEVIEWECRFGEYIHDHGDVVAQHARDFVAFAGQHVNKG 181 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG--GEYVMFTYEGLGTGV 236 + + P + D+Q + AL D VL + V G G Y ++G + Sbjct: 182 WLGFQFSPGEGSADQQHISLFQALESQHGD--VLPSNVVNWTGESGLYAEIDWQGAPEQI 239 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIER 263 F +Y +P L + RR+G+D+ R Sbjct: 240 NAFTADMYYIHLPALGVARREGKDLLR 266 >UniRef50_P28816 Transposon Tn10 tetD protein n=29 Tax=root RepID=TETD_ECOLX Length = 138 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 63/104 (60%), Positives = 84/104 (80%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I+D+L+W+E +LDQ L LD+VA KAGY+KW+ QR+FK VTG + +YIRARRL+K+AV Sbjct: 29 VIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVE 88 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 LRLT + IL+IAL+Y+FDSQQ+FTR FK F TP+ YRR+ W Sbjct: 89 LRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLW 132 >UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=Enterobacteriaceae RepID=C8QFY6_9ENTR Length = 142 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 2/128 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II L W++ +LD+ LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ Sbjct: 1 MMQEEIIHSLTHWIDQNLDKTLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A ALR T RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + A RP RL Sbjct: 61 LAAEALRQTQRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTAYRHTMRRQAMIQRP--RL 118 Query: 121 GEFTMPEH 128 F E+ Sbjct: 119 VSFDCSEN 126 >UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR1_ECOSE Length = 294 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 22/294 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II D+LIW+E H++ + +++V +GYS+ ++Q +FK TG ++G Y++ RRL Sbjct: 1 MLQTMIINDILIWIENHIEDGIIIEDVVNLSGYSRRYIQYLFKKETGLSLGGYLKRRRLC 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + A+ +RLT +LDIA++ RFDSQQ+F+R FKK F P +YR W + PP Sbjct: 61 RGAMYVRLTTMRMLDIAVRLRFDSQQSFSREFKKVFNCPPYIYRTRDYWDLSCLCPPWEY 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSL-----EQI--SDFRHEMRYQFWHDFLGNAPT 173 +P+ FV L G SY+ ++ E + + ++MR + +FL Sbjct: 121 NMTGIPKVDFVRLPQLSYSGHMFSYNENILGTRGEAVREKNITNDMRL-YSENFLYITYY 179 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 P + + + VF T + + + + GEY+ ++G Sbjct: 180 SPSI-------------KNSENVFIKTFSCPQENEERKCNNQNISIPAGEYLKTYFKGNI 226 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +FI VY +P + RR+G DIE Y+ + + D+ + + +P+ Sbjct: 227 ASLHKFIRQVYFVILPEYKMARRRGGDIE-YFDICEYRNNDKKPYVNLQFFVPV 279 >UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=Enterobacteriaceae RepID=B2K4J9_YERPB Length = 297 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 10/254 (3%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDI 76 +L++ +LD+VA +GYSKWHLQR FK + G + +YIR R L+++AVALR++ +PI+ I Sbjct: 19 NLEKRPTLDDVAKISGYSKWHLQRKFKSIVGLQLASYIRGRVLTRAAVALRISRKPIITI 78 Query: 77 ALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDT 136 + + FDSQQTFTR FKK+F TP +R+ W G+ P E PE K VTL Sbjct: 79 SDELGFDSQQTFTRTFKKRFGVTPNSFRQMNHWDVQGMIPRFGFYENYTPEIKQVTLPGK 138 Query: 137 PLIGVT-----QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKD 191 L+G T + Y+ + Q S M+ + DF +Y L + + Sbjct: 139 ELVGFTRRLDFEEYNGCVVQRSSC-MAMKDEILLDFFKEVNFACQRIYSLFSVKDVDGQQ 197 Query: 192 DEQEVFYTTALAQD---QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 ++ V+Y+TA+ ++ + G H + + GE++ +++G +F ++ + Sbjct: 198 GQKSVYYSTAIDKERKHEIQGSREIDH-IAIPEGEFLSISHQGSAKECVKFATYLFNNVL 256 Query: 249 PMLNLTRRKGQDIE 262 P L +G ++E Sbjct: 257 PKLRDEVGRGIEME 270 >UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salmonella enterica RepID=B5RA11_SALG2 Length = 285 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 4/271 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + II +L +E +L++ + ++ + GYS+ LQ FK+ G +IG YIR R+LS Sbjct: 2 MMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLS 61 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +SA L+LT++ + DIA + FDS Q+++R KK F P YR++ W +RPP L Sbjct: 62 RSATLLKLTSQSVTDIAFRMGFDSVQSYSRELKKTFGVNPNNYRKADFWDLRNLRPPYWL 121 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + L + G S+ + + ++++ H+ L T +Y Sbjct: 122 DCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETL---RTWGENVYC 178 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ +P KD V + + DG + V ++ G+Y F + G Q+F Sbjct: 179 LSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRV-IKCGKYAKFHFVGHKEQYQQFS 237 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAK 271 T+Y +P LNL RR+G+DIE ++ A K Sbjct: 238 NTIYMCILPKLNLIRREGEDIEYFHLASVQK 268 >UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmaniensis RepID=B2VKB8_ERWT9 Length = 141 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 58/101 (57%), Positives = 77/101 (76%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II L W++ +L + LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ +A A Sbjct: 5 IINTLTHWIDNNLGKNLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLAAEA 64 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 LR + RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + Sbjct: 65 LRQSHRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTDYRNT 105 >UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Enterobacter cloacae RepID=Q6WFA3_ENTCL Length = 134 Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 81/116 (69%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 +++D++ W+E L L ++ +A K+GYS+WH QR+FK TG A+G Y+RARRL+ +AV Sbjct: 9 SVVKDIVQWVENSLTSTLLVEEIAEKSGYSRWHFQRIFKHATGIALGEYVRARRLTCAAV 68 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 L+LT + +L+IAL Y F+SQQTFTR+FK +F P YR+ W+ + PPL L Sbjct: 69 ELKLTTKTVLEIALHYGFESQQTFTRSFKNKFHLPPGRYRKQIAWNLSALCPPLLL 124 >UniRef50_A2TEG4 AraC-like protein (Fragment) n=1 Tax=Serratia marcescens RepID=A2TEG4_SERMA Length = 122 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/79 (72%), Positives = 68/79 (86%) Query: 31 AGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTR 90 +GYSKWHLQRMF+ TGHA+G+YIR RRLS++A ALR T RPILDIALQY FDSQ +F+R Sbjct: 1 SGYSKWHLQRMFRSTTGHALGSYIRERRLSQAAQALRSTPRPILDIALQYHFDSQPSFSR 60 Query: 91 AFKKQFAQTPALYRRSPEW 109 AFKKQF +TPA+YRR+ W Sbjct: 61 AFKKQFGKTPAVYRRTTRW 79 >UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria RepID=SOXS_ECO57 Length = 107 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/104 (55%), Positives = 77/104 (74%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II+DL+ W++ H+DQPL++D VA K+GYSKW+LQRMF+ VT +G YIR RRL Sbjct: 1 MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +AV LR T RPI DIA+ + SQQTF+R F++QF +TP+ YR Sbjct: 61 LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYR 104 >UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA n=49 Tax=Enterobacteriaceae RepID=YKGA_ECOLI Length = 239 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 92/153 (60%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + I++ LL W+E +L+ P+S++++A K+GYS+ ++Q +F++ +G YIR RRL Sbjct: 12 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLC 71 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A+ +RLTA+ +LDIAL FDSQQ+F+R FKK F +P YR W I P + Sbjct: 72 RAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLI 131 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQIS 153 + E + + +TP+ G + Y + S Sbjct: 132 RQQQKTECRLINFPETPIFGNSFKYDIEVSNKS 164 >UniRef50_A8GD44 Transcriptional regulator, AraC family n=9 Tax=Enterobacteriaceae RepID=A8GD44_SERP5 Length = 118 Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 51/105 (48%), Positives = 74/105 (70%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ G I DL+ W++ +L++ L ++ VA +AGYSKWHLQRMFK TG+A+G YIR ++L Sbjct: 1 MNSTGFITDLIEWIDNNLEEKLDINTVAGRAGYSKWHLQRMFKRQTGYALGEYIRMQKLR 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 SA L + PI+ +A+ FDSQQ+F R+FK+ + QTP +RR Sbjct: 61 VSAERLANSGEPIVSVAISLGFDSQQSFNRSFKRHYGQTPGDWRR 105 >UniRef50_P43463 HTH-type transcriptional activator aarP n=3 Tax=Providencia RepID=AARP_PROST Length = 135 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 76/104 (73%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q+ II ++L+W+EG+L LSLD++A +GY+KWHLQR+F+ + G +G YIR RR+ ++ Sbjct: 17 QSSIISEILVWIEGNLTNRLSLDDIAQHSGYTKWHLQRVFRKIVGMPLGEYIRRRRICEA 76 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 A L+ T ++DIAL+Y+FDSQQ+F + FK +P+LYR S Sbjct: 77 AKELQTTNLQVIDIALKYQFDSQQSFAKRFKAYLGISPSLYRLS 120 >UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwardsiella RepID=C5BEG3_EDWI9 Length = 122 Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 48/103 (46%), Positives = 80/103 (77%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 ++ L+ W+E +LD+ + +D++A +AGYSKW+LQR+FK+VTG+++ AY+R RRL ++A Sbjct: 10 LVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRAAAE 69 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 L+ + + I++I LQY FDSQQTF+RAFK+++ +P YR+ + Sbjct: 70 LQRSNKKIMEIMLQYGFDSQQTFSRAFKRRYGTSPGSYRQQAD 112 >UniRef50_A8GHJ0 Transcriptional regulator, AraC family n=1 Tax=Serratia proteamaculans 568 RepID=A8GHJ0_SERP5 Length = 140 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 52/104 (50%), Positives = 73/104 (70%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I ++L W+EG+L L++ +A K+GYS++H+QR+FK G + YIR RR++++A+AL Sbjct: 9 INEMLKWIEGNLGAELNIKTIAKKSGYSRFHIQRLFKLHAGLTLAQYIRMRRVTEAAIAL 68 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS 110 R T R I+DIAL Y FDSQQ FTR FKKQ TP RRS + + Sbjct: 69 RFTDRKIMDIALDYGFDSQQVFTRTFKKQLKTTPGELRRSKQLN 112 >UniRef50_D1NY75 Multiple antibiotic resistance protein MarA n=5 Tax=Enterobacteriaceae RepID=D1NY75_9ENTR Length = 123 Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 2/106 (1%) Query: 5 GIIRDLLIWLEGHL--DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ +++ WLE L ++ + +D +A K+GYSKWHLQR+FK++ G +G Y+R RRL ++ Sbjct: 4 SVVNEIIRWLESQLQRNEGIKIDTIADKSGYSKWHLQRVFKELKGCTLGEYVRKRRLLEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 A +LR PILDIALQY F SQ TFTR FKK F TPA +R++ E Sbjct: 64 AKSLREGNLPILDIALQYGFSSQATFTRIFKKHFDTTPAKFRQAGE 109 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 141/304 (46%), Gaps = 39/304 (12%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ + ++E HL +P+SL+ VAA A YS +H R+FK G + YI+ RRL+K+A AL Sbjct: 7 VQRAIDYIETHLHEPISLEKVAAHASYSYFHFHRLFKATVGCTMSEYIKRRRLTKAAYAL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-----G 121 T I+DIA +Y ++SQ+ FTRAFK+ F P YR++ RPP++L Sbjct: 67 LETKASIIDIAFEYGYESQEAFTRAFKQWFNVLPGKYRQA--------RPPVQLIDPYWA 118 Query: 122 EFTMP-----EHK--FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY---QFWHDFLGNA 171 T P +HK VT + ++G+ Q SL SD + WH Sbjct: 119 VKTFPVNATGDHKPYIVTRQPLQVVGL-QLEGLSLPGGSDREQTTQVAIPSLWHQLEARI 177 Query: 172 PTI-----PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGH-PVMLQGGEYV 225 I P V YG+ + PS+D Y + + D + G ++GG Y Sbjct: 178 HEIERRVDPFVSYGI--SSPSRDGS---HFTYMACVEIEAGDVNIPQGFIQKEIKGGTYA 232 Query: 226 MFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 F Y+G + +YG+ +P G +IE Y E + G+ + E+ Sbjct: 233 SFHYKGAANQLSALTNYIYGSWLPSSQYQSHFGVEIEVYDEREPKEDGE----VAVEIWT 288 Query: 286 PIRR 289 PI++ Sbjct: 289 PIKK 292 >UniRef50_P0ACH6 Multiple antibiotic resistance protein marA n=133 Tax=Bacteria RepID=MARA_ECO57 Length = 127 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 51/101 (50%), Positives = 71/101 (70%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A I +L W+E +L+ PLSL+ V+ ++GYSKWHLQRMFK TGH++G YIR+R++++ A Sbjct: 8 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIA 67 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L+ + PIL +A +Y F+SQQT TR FK F P YR Sbjct: 68 QKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYR 108 >UniRef50_C8QA11 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QA11_9ENTR Length = 132 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 71/102 (69%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 I LL+W+E +++Q L L+ VA +AGYS+WHLQR+F+ TG A+G+YIR R+L+ S Sbjct: 5 VAFIHQLLLWIEANIEQKLILETVAQRAGYSQWHLQRLFRSYTGIALGSYIRERKLTASV 64 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +AL P++ IALQ+ FDSQQT+ R F++ F P +RR Sbjct: 65 IALLTDNTPLMHIALQFGFDSQQTYCRTFRRMFNLPPGAFRR 106 >UniRef50_A4WA37 Transcriptional regulator, AraC family n=3 Tax=Enterobacteriaceae RepID=A4WA37_ENT38 Length = 120 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 74/106 (69%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + DLL W++ +LD L +++VA ++GYSKWHLQR+FK+ TG+ + YIRA++L Sbjct: 1 MNTGAFMHDLLDWIDNNLDSRLDIESVARRSGYSKWHLQRLFKEHTGYPLAGYIRAQKLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 KS L + PIL++A+ FDSQQ+F R+FK+ + Q P +RRS Sbjct: 61 KSVERLTHSDEPILNVAIALGFDSQQSFNRSFKRLYGQAPGAWRRS 106 >UniRef50_Q52620 Regulatory protein pqrA n=6 Tax=Enterobacteriaceae RepID=PQRA_PROVU Length = 122 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 2/104 (1%) Query: 5 GIIRDLLIWLEGHL--DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ D+L WLE L ++ + +D +A K+GYSKWHLQR+FKD G +G Y+R RRL ++ Sbjct: 4 NVVNDILKWLETQLQRNEGIKIDTIANKSGYSKWHLQRIFKDFKGCTLGEYVRKRRLLEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 A +L+ ILDIAL Y F SQ TFTR FKK F TPA +R + Sbjct: 64 AKSLQEKDMSILDIALMYGFSSQATFTRIFKKHFNTTPAKFREN 107 >UniRef50_Q48413 Transcriptional activator ramA n=51 Tax=Bacteria RepID=RAMA_KLEPN Length = 113 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/102 (49%), Positives = 69/102 (67%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A +I ++ W++ +L QPL +D++A AGYSKWHLQR+F G ++G YIR R+L +A Sbjct: 5 AQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAA 64 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 LR T + + DI L+Y FDSQQTFTR F + F Q P YR+ Sbjct: 65 RDLRDTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYRK 106 >UniRef50_D0ZAS7 Transcriptional regulator, AraC family n=2 Tax=Edwardsiella RepID=D0ZAS7_EDWTE Length = 135 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 51/105 (48%), Positives = 72/105 (68%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I L W++ ++ SLD+VAA+AGYSKWHLQRMFK TG +G YIR ++L Sbjct: 19 MYNTDFISALRTWIDSNVAAISSLDDVAARAGYSKWHLQRMFKAHTGVRLGEYIRNKKLD 78 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +SA L++ ILDIAL FDSQ++FTR+FK++F TP ++++ Sbjct: 79 ESARRLKVCQGSILDIALSMGFDSQRSFTRSFKRRFDVTPGVWKK 123 >UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MRK1_SALAR Length = 286 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 21/294 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + I++ + W+E H+++ ++D++ GYS+ +Q MFK G +G Y+R R++ ++ Sbjct: 4 EKKIVQHFVRWIEDHIEEDKTIDDLVNYTGYSRRAVQLMFKKEYGVPVGTYMRQRKMCRA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LRLT +++IA + F Q F RAFK F TP YR P W + P + + Sbjct: 64 ATLLRLTKLSVIEIAHRVHFSGTQNFGRAFKHAFNMTPTEYRNLPSWDLSLLVPAINIDN 123 Query: 123 FTMPEHKFVTLEDTPLIGVTQSY------SCSLEQISDFRHEMRYQ---FWHDFLGNAPT 173 + V + G Y + +LE + ++R+ + + + + Sbjct: 124 CWNVDSCIVERSGIYVSGDECFYQQKILRTPTLESKRNRLKKIRHYSELYKTNIVIASNF 183 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 +PP + R S +D V T L+ + + ++GG Y+ F + G Sbjct: 184 LPP------KNRYSAIRD----VIDITMLSGVEVEKNTAKNDTFYVEGGRYIKFVFNGKW 233 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +F +Y +P L RR G DIE ++ + D P C+ IP+ Sbjct: 234 SDYSKFSHYIYMNILPKTKLHRRSGADIELFHYTTNF-YDDDP-KFICDYFIPV 285 >UniRef50_B2Q528 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q528_PROST Length = 117 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 71/101 (70%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 +I+D+L+W++ ++D+PL++ ++ +AGYSKW+ QR+FK+ G ++G Y+ RL K + Sbjct: 9 NVIQDILLWIDMNVDKPLNIAEISHRAGYSKWYFQRIFKNTVGVSLGQYLLINRLLKVSS 68 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L+ T I+DIA +Y FD QQ TRAFK++ TPA YRR Sbjct: 69 DLKQTNDKIIDIAFRYGFDGQQGLTRAFKRKLKVTPAKYRR 109 >UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ2_PROMI Length = 285 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 141/300 (47%), Gaps = 38/300 (12%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II D+L W+E +L +P+S +V K+GYS+ + Q +F T I YI +R+LS SA+ Sbjct: 5 IINDILDWIEDNLTKPISTIDVIKKSGYSQRYFQDLFLHKTKSTIAKYILSRKLSMSAIL 64 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L+LT I +I+ Y F SQQ F+RAFK+ F TP YR+S W RP ++ +F Sbjct: 65 LKLTRYSISEISNDYSFTSQQNFSRAFKRYFKVTPEFYRKSKFWDFRYYRPQHKVFDFKK 124 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQIS---DFRHEMRYQFWHDFLG--NAPTIPPVLYG 180 + + L L+ S IS DF+ + + LG N I + Sbjct: 125 INCQLIYLSKDRLLD-NNSDDFKFFDISIPFDFKSNIAIE----GLGYKNKKQIEIIKSL 179 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVML---------QGGEYVMFTYEG 231 ++ + +D V Y L+ + + + + +G +Y +F++ Sbjct: 180 VDSS------NDNLCVSYNYFLSSKVKNKITVKYNIKYIHDYNFSFNKEGLKYYLFSF-- 231 Query: 232 LGTGVQEFILT--VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL--LIPI 287 LG+ IL+ +Y +P+L RR G DIE + ++ D+ I C L LIPI Sbjct: 232 LGSWEDYMILSNIIYMRELPLLQAKRRDGYDIEIF----NSGKLDKNI---CSLNYLIPI 284 >UniRef50_UPI0001A4290C hypothetical protein PcarcW_09175 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum WPP14 RepID=UPI0001A4290C Length = 126 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/102 (48%), Positives = 67/102 (65%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 QA II+DL +W+E +L+ L +D V++K+G+SKWHLQR+F TG IG YIR RRL + Sbjct: 4 QAEIIKDLRLWIESNLENDLVIDAVSSKSGFSKWHLQRIFVQETGIPIGRYIRNRRLQLA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + L +T I DI L+Y F +QQ FTR F + F P +R Sbjct: 64 SEELAVTKNTISDIPLKYGFSNQQAFTRTFTRHFRMPPGQWR 105 >UniRef50_D2BST7 Transcriptional regulator, AraC family n=2 Tax=Enterobacteriaceae RepID=D2BST7_DICD5 Length = 113 Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 71/100 (71%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I +++ W++ ++ Q LS+D+VAA++GYSKWHLQR+F G I AYIR ++L+ +A Sbjct: 7 LITEIIQWIDDNIHQQLSIDDVAARSGYSKWHLQRVFFQKNGKNIAAYIRDKKLALAAYD 66 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L + +LDI +Y FDSQQ+FTR+F K+++ P YRR Sbjct: 67 LVESKDRVLDIGFRYGFDSQQSFTRSFSKKYSIPPQKYRR 106 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 13/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E +L+Q L ++VA GYS +H R+F+ + G IG YIR R+++ Sbjct: 1 MDYIKSLEKAIMYIEENLNQDLKTEDVAKSIGYSYYHFTRLFEGLLGETIGNYIRKRKIT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L T + I+DIAL ++F S + F RAFKK + +P YR++ G + + Sbjct: 61 KTAQDLIYTDKRIIDIALDFQFKSPEAFARAFKKIYDISPTEYRKNRIDVLKGNKKYI-- 118 Query: 121 GEFTMPEHKFVTLEDTPLIGVT-QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI----- 174 + +H + P+I V + ++ + ++ + W F N+ I Sbjct: 119 -DNERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNKNSSKIVNKAE 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV-MLQGGEYVMFTYEGLG 233 P YG+ E ++ E + + + Y+ G ++ G+YV+FT++G Sbjct: 178 PLKYYGICENDRPTNQFGENVAYSEIVGIEVTSFDYIPEGMVAKVIPQGKYVVFTHKGSI 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +QE ++GT +P + D E Y E K + ++ ++ IPI+ Sbjct: 238 HKLQETYEYIWGTWIPFSKVELDMRDDFELY--DEGFKGANNHLS-EIDIYIPIK 289 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 140/309 (45%), Gaps = 43/309 (13%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E L + LSL+ +A +AG+S +H QR+F +TG + YIR RRLS Sbjct: 11 MEHYTRIQYAITFIEEQLQEALSLEAIAIRAGFSLYHFQRLFHAITGFTVQEYIRKRRLS 70 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A LR+T +LDI++ Y++ SQ+ FTRAF F PA YR+ A +R P+ L Sbjct: 71 RAAEELRVTRHTVLDISVSYQYGSQEAFTRAFAGYFGMAPAQYRKHQPLLA--LRLPIDL 128 Query: 121 --------GEFTMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFL 168 G TM + + T +IG + + E+I F H++ Sbjct: 129 VALTANIRGGLTMYKPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGN---HEYF 185 Query: 169 GNAPTI--PPVLYGLNETRPSQDKDDEQEVFY----TTALAQDQADGYVLTGHPVMLQGG 222 P P YG+ P +D F T+ A+ + +G+ + L G Sbjct: 186 MRIPNKARPAFAYGI----PHGYGEDGAFSFLIGEEVTSFAEVE-EGFAC----LELPSG 236 Query: 223 EYVMF---TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINL 279 +Y F T +G ++I YGT +P N R +G D E D P + Sbjct: 237 KYAAFRNGTMPEIGQNAWKYI---YGTWLPNSNYERGEGPDFE----VTDV-LNSTPQKI 288 Query: 280 RCELLIPIR 288 + IPIR Sbjct: 289 SMTIYIPIR 297 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/311 (26%), Positives = 142/311 (45%), Gaps = 44/311 (14%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II +I++E +L +PL++++VA+ YS +H R F+ V G IG+YIR+RRL+ Sbjct: 1 MKDKQIIGRAIIFIETNLYEPLTVESVASAVSYSYYHFHRYFQVVMGETIGSYIRSRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L + + ILDIA+ F+S ++FTRAFKK++ TP YR + G P+++ Sbjct: 61 QAAYNLVHSKKRILDIAILLYFESAESFTRAFKKRYGITPMEYRENGIDVLIGNHNPMQI 120 Query: 121 GEFTMPEH-----KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + T + + VT + ++G Y S+E+ + + W NA Sbjct: 121 DKITESNYANLQPEIVTFQPKCVVGF--RYYMSIEKNNSI------EMWEKL--NAQLEK 170 Query: 176 PVLYGLNETRPSQ------------DKDDEQEVFYTTALAQDQA--DGYVLTGHPVMLQG 221 +N R S +K+ E +F + D +G L + G Sbjct: 171 QKYISMNNNRYSIYETSGTCLQNTFNKNSETTLFIGIETSDDNNIPEGMELKE----ISG 226 Query: 222 GEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDI----ERYYPAEDAKAGDRPI 277 G+Y F ++G + ++G P + D+ E++ AED ++ Sbjct: 227 GKYAKFVHKGTVKNLISTYHYIWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEES----- 281 Query: 278 NLRCELLIPIR 288 + E+ PI+ Sbjct: 282 --QIEIYFPIQ 290 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/295 (28%), Positives = 123/295 (41%), Gaps = 46/295 (15%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q I+ L +E + PLS++ +A A S WH QR F + G +G YIR RR++ Sbjct: 22 MRQIQAIQTQLDRIESLITAPLSIEKLALDASMSYWHFQRTFTAMVGEPVGRYIRRRRIA 81 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ L +LD+AL Y+F+S + FTRAFK + + TP+ +R Sbjct: 82 HAAMRLLDYESTLLDLALDYQFESHEAFTRAFKNELSVTPSDWREG-------------R 128 Query: 121 GEFTMPEHK--------------------FVTLEDTPLIGVTQSYSCSLEQISDFRHEMR 160 G P H+ V+L T G+ + L SD + M Sbjct: 129 GSILYPRHREHLTQAKLDQRYKNMRLLPEIVSLPSTTFAGLQSRF---LSATSDEANNMT 185 Query: 161 Y--QFWHDFLGNAPTIPP----VLYGLNETRPSQD--KDDEQEVFYTTALAQDQADGYVL 212 W+ F A + V YGL+E + + + E Y A AQ D V Sbjct: 186 VIPNLWNAFFERASELQNLTEGVYYGLSENPEAINLARQHPDEAIYLAA-AQVDPDAPVP 244 Query: 213 TG-HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYP 266 G H GG + F ++G + E I +YG P R+G DI R+ P Sbjct: 245 EGMHSWNSVGGLFAKFEHQGPVDTLGETIAYIYGKWFPESEYKEREGPDINRFGP 299 >UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LRE5_ESCF3 Length = 266 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 69/101 (68%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 ++ W+ +++ P++++++ +GYS+ HL +F TGH++ Y+R +RLS +A L+L Sbjct: 3 NIFAWINKNIESPINVEDLVKISGYSRRHLHTLFMQYTGHSVAEYVRLKRLSYTAHLLKL 62 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 T +LDI+L+Y +DS Q+F+R FK+ + TP YRRS +W Sbjct: 63 TNLSVLDISLRYHYDSPQSFSRVFKRYYQMTPLAYRRSQQW 103 >UniRef50_A6TN59 Helix-turn-helix-domain containing protein, AraC type n=7 Tax=Clostridia RepID=A6TN59_ALKMQ Length = 303 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/96 (45%), Positives = 66/96 (68%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E +L+ P++L ++A AGYS+WH R+FK++TG A Y+RA RL+K+A+ LR Sbjct: 16 YIEQNLNCPITLSDLAKVAGYSQWHSARIFKELTGKAPFEYMRALRLTKAALLLRDKRTK 75 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 ++D+A + FDS + FTRAF KQF +P Y SPE Sbjct: 76 VIDVAFDFVFDSHEGFTRAFSKQFGVSPKKYSNSPE 111 >UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5D7_BREBN Length = 285 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/96 (46%), Positives = 64/96 (66%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 L ++E L + ++LD VA+ AGYSK+H QR+F VTG +G YI RRL+++A AL L Sbjct: 11 LSFIEKQLTEKVTLDEVASAAGYSKYHFQRLFFHVTGETVGQYISKRRLTEAAKALSLEQ 70 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 + + ++A Y FDS + FTRAF K+F P+ RRS Sbjct: 71 KSVTEVAFTYGFDSHEAFTRAFTKRFGLPPSALRRS 106 >UniRef50_B2VHH7 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VHH7_ERWT9 Length = 110 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%) Query: 7 IRDLLI-WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I D+++ W+E H+++ L+++ VAAK+GYSKWHLQR FK G + +IR RRL ++A + Sbjct: 5 IVDVIVDWIECHIEEGLNIEAVAAKSGYSKWHLQRAFKAQKGITLATFIRGRRLEQAAQS 64 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L + + I+ I+ + F SQQ F R FKK F TP YR Sbjct: 65 LVNSTKSIMAISTELGFSSQQCFQRVFKKHFHITPRDYR 103 >UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_ECOLX Length = 327 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 47/275 (17%) Query: 13 WLEGHLDQ-PLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 71 +++ +LD+ +++D++ A +GYS+ +LQ +FK G A+G YI+ RR+S++AV LRLT Sbjct: 52 YIDDNLDKTSINIDDLVAYSGYSRRYLQLLFKRHIGMAVGRYIQLRRVSRAAVFLRLTDL 111 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFV 131 + +I+ + +DS QTF+R FKK TP YR S WS + R T P K Sbjct: 112 SLSEISERLLYDSPQTFSREFKKNTGYTPLQYRSSNVWSFMNL-TGFRDTNTTFPAPKLY 170 Query: 132 TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN-----ETRP 186 L+ + + + C E+I YGLN E Sbjct: 171 QLQKRDIYA--EHFICCQEEIP------------------------YYGLNSLSRIERIT 204 Query: 187 SQDKDDEQEVFYTTALAQDQADGYVLTGH------------PVMLQGGEYVMFTYEGLGT 234 S +D +++F + + ++ G+ + H +++ G Y + + G Sbjct: 205 SALRDGNKKIFLSNLVEKNV--GHKINIHTMLWLEKGNSETKIVINKGIYASWKFVGTIQ 262 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED 269 +FI +Y +P L R+G DIE + D Sbjct: 263 NYIQFINHIYMNVLPFYGLNPREGYDIETFKEYSD 297 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 23/250 (9%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E HLD+ + L +V+ + GYS +H+ R+F V G +G YI RRL ++A L + R Sbjct: 20 YIETHLDENIDLGDVSREMGYSYYHMTRLFSAVLGEPVGRYISRRRLYRAAQQLVHSDRR 79 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP-EWSAFGIR-------PPLRLGEFT 124 I+DIAL+ F S + F+RAFK F TPA YR++ + A R P + G Sbjct: 80 IIDIALESGFQSPEAFSRAFKALFKTTPAGYRKAGLDLVATAKRQLLPGDVPHIAAGISH 139 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL---GNAPTIPPVLYGL 181 PE +T E+ + G+ S S +I Q W FL G+ + Y + Sbjct: 140 SPEILQMT-EEIKIAGLRDITSISQNRIP--------QLWDQFLRFHGDLYELTETAYSI 190 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVL--TGHPVMLQGGEYVMFTYEGLGTGVQEF 239 ETR + +D +V ++ + D L T L+ G+Y +FT+ G + + Sbjct: 191 CETRQTAYAED-GDVTFSVMVGSPVPDFSNLPETLAQTTLRPGKYAVFTHRGSLEKLLQT 249 Query: 240 ILTVYGTCMP 249 +YGT +P Sbjct: 250 YQYIYGTWLP 259 >UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQJ6_9FIRM Length = 289 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 27/281 (9%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II++++ +++ HL+ L ++++ +AGYS++HL RMF +TG ++ YI+ RRL+++A Sbjct: 7 IIQEVVDYIDSHLEDRLDAESISRQAGYSRYHLSRMFTSITGLSLHTYIQRRRLTEAARQ 66 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR------PPLR 119 L T RP++DIAL + SQQ FT F+ F TP +R+ ++ ++ LR Sbjct: 67 LVFTDRPVMDIALSAGYGSQQAFTVGFRALFRTTPRAFRKKGDFHPLQLKFTADGTDALR 126 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI----- 174 G+ M T+E P+ Y ++ + + Q W TI Sbjct: 127 -GDRIM---DIRTMESGPI------YLAGYKKNTRLGFFVIGQCWRRLHAAKHTIPNRKD 176 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM-LQGGEYVMFTYEGLG 233 P L GLN+ D Q F A ++ G + G L G+YV+F + Sbjct: 177 PDFLVGLNDYTKWDADADRQPAFDYYAASEQTQPGRLPPGMEAKELPAGKYVIFRFRARS 236 Query: 234 T-GVQEFILTVYGTCMPMLNLTRRKGQ---DIERYYPAEDA 270 T +Q +Y T P + R G D RY DA Sbjct: 237 TDSLQPVADYIYKTWFPQ-STCRLNGHAPYDFARYGEEMDA 276 >UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Bacteria RepID=Q17ZV7_CLOD6 Length = 289 Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 122/262 (46%), Gaps = 22/262 (8%) Query: 1 MDQAGI-IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 MD I I L ++E HL D+ L L+ ++ + GYSK+HL RMF V G ++ YI+ RR Sbjct: 1 MDNNLITIEKTLDYIEKHLLDEMLDLNVISKEIGYSKYHLHRMFTSVVGFSVHNYIQRRR 60 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS----PEWSAFGI 114 L+++A L T +PI++IAL +D+Q++F+R FKK F ++P +RR P F I Sbjct: 61 LTEAARMLIFTEKPIIEIALISGYDTQRSFSRGFKKMFKRSPNFFRRHQDFLPLQLKFDI 120 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 +L + + K V D ++G + I + W D N I Sbjct: 121 HNRKKLRGDMVLDVKKVNCADINIVGYSGKVRKGFHIIG--------KCWRDLHKNKEMI 172 Query: 175 PP-----VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTG-HPVMLQGGEYVMFT 228 L G+++ ++ ++ F A AQ G + G +L Y++FT Sbjct: 173 ENKVDLGFLIGVSDYSNFKEIEN-TPTFTYIAGAQVATFGKLPNGMEKFVLPKSNYIVFT 231 Query: 229 YEGLGT-GVQEFILTVYGTCMP 249 + G +Q + +Y P Sbjct: 232 FIGKNEDSMQNVVEYIYQEWFP 253 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 59/318 (18%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ + ++E +L +S+ +++K+ +S +H QR+F+ +TG ++ YIR RRLS Sbjct: 1 MDYYERIQHSIEFIEENLQNNISIKEISSKSCFSAFHFQRLFQAITGFSVQEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR--------------- 105 ++A L+ T + +L IA+ +++ SQ+ FTRAF + F TP +R+ Sbjct: 61 EAARLLKETKQNVLHIAIAFQYGSQEAFTRAFVQFFGVTPGRFRKEGVMLKKQNKMDFLA 120 Query: 106 --SPEWSAFGIRPPL--RLGEFTMPEHKFVT-------LEDTPLIGVTQSYSCSLEQISD 154 S S + P+ +LG F + +++ T D PL + D Sbjct: 121 YQSKLDSELNMNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYM------------D 168 Query: 155 FRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQD----QADGY 210 F + YQ + P + YG++ + +DD F +D +G+ Sbjct: 169 FGKKEYYQQIQKKIA-----PHMAYGISTSF----QDDGHFSFVVGEEVEDFDLELNEGF 219 Query: 211 VLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDA 270 V +++ G+Y F G VQ +YG+ +P N R G D E D Sbjct: 220 V----KIVIPEGKYAEFKVSGSHEMVQNTRRYIYGSWLPNSNYERTSGPDFE----ITDV 271 Query: 271 KAGDRPINLRCELLIPIR 288 + P +++ ++ IPI+ Sbjct: 272 LHSNGPNDIKMKIYIPIK 289 >UniRef50_C5BDV7 Transcriptional regulator, AraC family n=45 Tax=Enterobacteriaceae RepID=C5BDV7_EDWI9 Length = 132 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 66/105 (62%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A ++ L W+E HL + + LD +A +GYS WH+Q++F++ TG ++G YIR R+L+ +A Sbjct: 8 AALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRLRKLTGAA 67 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 LR + I+DIAL Y F SQ FT F+K F TP YR E Sbjct: 68 RRLRHSDEGIIDIALCYGFASQSHFTYMFRKHFGMTPTRYRLQAE 112 >UniRef50_C8QG57 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QG57_9ENTR Length = 164 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 66/101 (65%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 G+I + W+ +LDQ LS+D++A K+GYSKW+LQ++F + YIR ++L+ V Sbjct: 9 GVILAVTDWIVENLDQRLSIDDIAQKSGYSKWYLQKLFARCHNETLARYIRKKKLAACVV 68 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L+ + I+ +A++Y F+SQQ+FTR+FK+ TP R+ Sbjct: 69 ELKNSEATIISLAVKYHFESQQSFTRSFKQMMGCTPLSCRK 109 >UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX Length = 309 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 36/269 (13%) Query: 7 IRDLLIWLEGHLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I +L ++E +++ P+ ++++ +GYS+ +LQ +F D G +G YI+ RR+S++AV Sbjct: 8 INAILDYIEDNIEISPIDINSLVEYSGYSRRYLQLLFFDYIGMPVGKYIQRRRVSRAAVL 67 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 LRLT P++ I+ + +DSQQTFTR FKK TP YR+ W+ F + R + Sbjct: 68 LRLTNLPLVTISEKLCYDSQQTFTREFKKHTGNTPLQYRKDKIWT-FKNQTGHRHLDTLF 126 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 P + LE+ G C E+I + E Q W N + Sbjct: 127 PVPELRRLENKDFFGTP---VCFKEKIP-YTAENSQQKW-----------------NMVK 165 Query: 186 PSQDKDDEQEVFYTTALAQDQA--DGYVLTG-------HPVM---LQGGEYVMFTYEGLG 233 + DE +F + A++++ D +++ H + + G + FTY G Sbjct: 166 SLFSRSDE-PLFVSNAISKENKLNDNFIINSIFWAKKEHSSIEGKIDEGLFAYFTYHGSI 224 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIE 262 I +Y +P L +R D+E Sbjct: 225 KDYVFHINNIYMNVLPYXGLQKRNSYDLE 253 >UniRef50_A8FAK8 Possible AraC family transcriptional regulator n=2 Tax=Bacillus pumilus RepID=A8FAK8_BACP2 Length = 295 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 66/99 (66%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I++ L ++E HL L L +A AGYS++H R+FK V ++ Y+R RR++++A L Sbjct: 10 IQETLNYIEQHLKDDLPLQTLAKHAGYSRFHFHRIFKKVIKKSVVDYLRERRMTQAAKDL 69 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 T + +DIA QYRF SQ++FTRAFKK + +PA YR+ Sbjct: 70 IHTDQRAIDIAFQYRFSSQESFTRAFKKIYDMSPARYRK 108 >UniRef50_Q180J9 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q180J9_CLOD6 Length = 160 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 71/119 (59%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I +++ ++E +L + L+LD +A A YSK+HL RMF +V G I YI+ RRL+++ Sbjct: 4 NTDVIMEIIDYIEENLTENLNLDKIAYIANYSKYHLHRMFTNVVGCTIHQYIQRRRLTEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 A L T + I+DIA+ + + Q+FT AF+ + ++P +YR E+ R L L Sbjct: 64 ARQLIFTDKYIIDIAITVGYSTHQSFTLAFRNLYKESPQVYRNKDEFYPIQQRFVLNLN 122 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 82/130 (63%), Gaps = 5/130 (3%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++ HLD PLSLD +AA++ +S+W LQR+F+ TG + Y+R +LS +A L Sbjct: 14 ISKVLGFIHRHLDTPLSLDEIAAQSCWSRWQLQRVFQAETGLTVANYVRQLKLSLAAELL 73 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 T + ++DIAL F+S+ F+RAFK+ FA +P +YR++ + + G++ P+ + E + Sbjct: 74 LDTDQRVIDIALATGFNSEIAFSRAFKQFFACSPRVYRKAGQRT--GLKKPIEISEVQIN 131 Query: 127 ---EHKFVTL 133 E FV + Sbjct: 132 GEREQSFVEV 141 >UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUU7_DESHD Length = 129 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 5/124 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + D L ++E +LD + L+++A KA SK++ R+F VTG ++ YI RR++ Sbjct: 1 MDYRAKVYDSLDYIEENLDDRIDLEDLAQKAYLSKYYYHRLFHKVTGESVTRYITRRRMA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L T +PI+DIAL+Y++ SQ++FTRAF + + P YR+ G R P ++ Sbjct: 61 KAAEELVETEQPIIDIALKYQYASQESFTRAFMRIYGLAPGKYRK-----IHGSRKPTKV 115 Query: 121 GEFT 124 F+ Sbjct: 116 INFS 119 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 140/299 (46%), Gaps = 32/299 (10%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I ++L+++ ++D+PL+++ +A + +S+W LQR+F++ TG + Y+R +RLS SA+ + Sbjct: 14 IENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSALEV 73 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + +LDIA Y F S+ F+RAFK+ F ++P Y++ + GI+ P P Sbjct: 74 LDKKKRMLDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAK--KIGIQKPFLKQVNVDP 131 Query: 127 ---EHKF-VTLEDTP---LIGVTQSYSCSLEQISDFRHEMRYQFWHDF---LGNAPTIPP 176 H + V LE P ++G++ L DF ++ W+ + P+IP Sbjct: 132 LLNSHFYRVRLEYKPSFKVLGLSTRLQGILSDTPDFNEKVP-SVWNALDTSIVYLPSIPE 190 Query: 177 VLYGLNETRPSQDKDD-------EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 Y + +TR ++ D E T L Q +AD ++T + EY + + Sbjct: 191 QKYAVIDTR-EENADSLLYWAGINCEALSTDELNQHKADLQIIT-----IPEQEYAVLPF 244 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +G + + + +P +G D+E Y + D E +PIR Sbjct: 245 KGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYQSSTTQGVID------VEYWLPIR 297 >UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=Klebsiella RepID=D0YAG4_KLEVA Length = 299 Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 133/285 (46%), Gaps = 14/285 (4%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L WLE ++ S+D++A GYS+ + +F IG YIR RRL+ +AV+LRLT Sbjct: 9 MLAWLEDNIYCNPSIDDLAQYMGYSRRFVYEVFYQYGQLPIGQYIRLRRLTIAAVSLRLT 68 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW-SAFGIRPPLRLGEFTMPEH 128 +PI IA Q +DS QTF+R FKK+F+ +P YR + W +A ++ GE ++P+ Sbjct: 69 RQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYRCAVHWDTALLLKKFDPEGE-SLPQA 127 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQI---SDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 +F +L + G Y L + S + +R + F L L++ Sbjct: 128 RFCSLPERVYRGSPMKYELRLSDMVLQSTSKTAVRQKVDRFFTAGGGR----LSVLSDYY 183 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM-LQGGEYVMFTYEGLGTGVQEFILTVY 244 +++ + EV +++ LT + + + G YV + G +Y Sbjct: 184 AARNNELNVEVNAFVGCHRERGALPALTTNSTLTTRPGLYVGVEFYGSWARYARLSSDLY 243 Query: 245 GTCMPMLNLTRRKGQDIERYYP--AEDAKAGDRPINLRCELLIPI 287 +P L +RR+G DIE + E A +R R IP+ Sbjct: 244 MELLPALGASRREGVDIECFLERHTEGGPAAER--RYRVRYFIPV 286 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 10/166 (6%) Query: 12 IW-LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 IW +E H + +SLD++AA AG S++HL R+F G +I AYIR RRLS +A+ L Sbjct: 8 IWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAALDLANGT 67 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKF 130 IL++AL+ + S + FTRAF++QF TP R+ + P+R+ + + + Sbjct: 68 SGILEVALEAGYGSHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTRTLKIEP 127 Query: 131 VTLEDTP---LIGVTQSYSCS-LEQISDFRHEMRYQFWHDFLGNAP 172 E++P L G+ ++Y + E I +Q + + GN P Sbjct: 128 PRFEESPGLLLAGLAETYDYNRTEGIPSL-----WQRFSAYFGNIP 168 >UniRef50_C8Q9G3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q9G3_9ENTR Length = 144 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 65/101 (64%), Gaps = 1/101 (0%) Query: 5 GIIRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 ++ D++ W+E HL D+ + + + K+GY WH QR+F++VTG+ +G Y+R RR+ ++ Sbjct: 24 SVVDDIIHWIEEHLYDETIRVSTITGKSGYGHWHFQRIFREVTGYNLGEYMRLRRVIRAT 83 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 A+ + + +L+IA+ F SQQTFTR +KK TP R Sbjct: 84 FAIIHSEKTLLEIAVANGFTSQQTFTRVYKKYMHATPGEIR 124 >UniRef50_UPI0001A437FB DNA-binding transcriptional activator MarA n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A437FB Length = 135 Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 64/104 (61%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 GII +L+ W+ D P++ VA +AG+S+WH+QR+FK TG +G YI+ +L K+ + Sbjct: 10 GIIDELIRWIAQQHDNPVTTAMVAERAGFSRWHMQRVFKQRTGITLGKYIKDVKLGKAVL 69 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 L P++ ALQ ++SQQTFTRA K TP +R P+ Sbjct: 70 ELIKGNEPVIITALQNGYESQQTFTRAIKNYTGLTPGKIKRLPD 113 >UniRef50_Q2B3U5 Transcriptional regulator (AraC/XylS family) protein n=2 Tax=Bacillus RepID=Q2B3U5_9BACI Length = 297 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 65/102 (63%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 + II+ + +E L + LSLD++A AG+SK+H R+F+ G + YIR RR++ SA Sbjct: 7 SSIIQKSIEHIESSLHEDLSLDHIAQTAGFSKFHYHRIFQKEVGVTVSEYIRYRRIANSA 66 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L T ILDIAL ++F+SQ+ FTR+FKK + P YR+ Sbjct: 67 HMLLYTDEKILDIALYFQFESQEAFTRSFKKYYHLPPGKYRK 108 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 128/283 (45%), Gaps = 20/283 (7%) Query: 12 IWL-EGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 +WL E LD L L+ +A+ +G S++ L R+F TG ++ Y++ARRLS +A L A Sbjct: 8 LWLIETELDTALDLERLASVSGLSRFTLSRVFAGATGWSVMRYVKARRLSCAAHRLAKGA 67 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE---FTMPE 127 IL++AL + S + FTRAF+ F TP R S + + +R LR+ + + Sbjct: 68 PDILEVALAVGYGSHEAFTRAFRDHFGITPETLRASGDLNGIELREALRMHATTGYALSA 127 Query: 128 HKFVTLEDTPLIGVTQSYSCSLEQ-ISDFRHEMRYQFWHDFLGNAP-TIPPVLYGLNETR 185 +FV E+ ++G+++ ++ Q I+ +Q + ++G P +G+ Sbjct: 128 PRFVDAEELLIVGLSERFNVETAQGIAAL-----WQRFGPYIGRIPGQQGSETFGVC-CN 181 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 P D E A + G L L Y +F +EG + + E ++ Sbjct: 182 PEDDGSFEYIAGVLVNRAAEVPAGLTLQ----RLAAHRYAVFLHEGHISSIHETFNAIFQ 237 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +P + + ERY D AG R E+ +P+R Sbjct: 238 HWLPTAGVQTAAAPEFERYSEDFDPMAGTG----RVEIWVPLR 276 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++ H+ +PLSLD++A ++ +S+W LQR+F+ TG A+ Y+R +LS++A L Sbjct: 17 ISKVLSFIHQHISEPLSLDDIARQSCWSRWQLQRVFQTETGMAVATYVRELKLSQAAERL 76 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 T+ ++DIAL+ F S+ +F+R+FK+ F +P YR+ + G+R P+++ + T Sbjct: 77 IDTSDRVIDIALELGFSSEISFSRSFKQVFGLSPRAYRK--QGLRTGLRKPIQVSQRTAE 134 Query: 127 E 127 E Sbjct: 135 E 135 >UniRef50_C5ERZ6 Right origin-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERZ6_9FIRM Length = 164 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 4/123 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++E HL++ + LD +A + YSK+++ R+F D TGH I YI+ RRL+ Sbjct: 19 MTNQTVVEKIADYIENHLEEDIPLDKIAKELNYSKFYIARVFADNTGHTIYKYIQGRRLT 78 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLR 119 +A L T +PI++IA + R+ SQQ FT AF + + TP YR++ F R P +R Sbjct: 79 LAARKLAETDKPIVEIAYEARYGSQQAFTLAFSQFYLCTPQTYRKN---GVFVPRLPRIR 135 Query: 120 LGE 122 LG Sbjct: 136 LGS 138 >UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BA46_9GAMM Length = 293 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 25/291 (8%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 LL ++ H+ +P+SLD +AA++ +S+W LQR+F TG+ + Y+R +LS +A L Sbjct: 13 LLDYIHRHIHEPMSLDTLAAQSAWSRWQLQRVFVAYTGYTVAQYVRELKLSLAADCLLEN 72 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR---LGEFTMP 126 + +LDIAL + F S+ F+RAFK+ F +P YR+ S GIR PL+ + +P Sbjct: 73 SDRVLDIALSFGFGSEVAFSRAFKQFFKVSPHQYRKRGLRS--GIRTPLQRADVSRLNLP 130 Query: 127 EHKF--VTLEDTP---LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG----NAPTIPPV 177 + V LE P G+ + L +F + W F PT P Sbjct: 131 ANTLYHVRLEHKPAFDFCGLPTRINGLLSGQPNFEDRIPAA-WQHFQQLTHRRLPTDRPR 189 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + GL +T + ++ Y T + Q + V + L +Y + Y+G + Sbjct: 190 I-GLIDTF---SQPTLGQLVYWTGIEQSKPSAPVFL-EKLSLPTSDYAVLPYQGPIDHFK 244 Query: 238 EFILTVYGTCMPMLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +P ++ + + ERY P+E AG +N E +PI Sbjct: 245 HAVTWLLAEWLPNADVHHSNNRFEFERYLPSE--TAGSEMVN--AEYWLPI 291 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 139/308 (45%), Gaps = 32/308 (10%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I+ + ++E H+ + LSL +A A S +H R+F+ + G + Y+R RRL+ Sbjct: 4 DYLAQIQQTIDYIEAHISEELSLSRLAQVAKLSDFHFHRVFQSMAGETVMEYVRKRRLAI 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS----PEWSAFGI--- 114 SA + + ++DIAL F + +TFTRAFK+ F TPA YR+ P +S + Sbjct: 64 SAYQVANSDAKLIDIALDTGFQNHETFTRAFKRMFEMTPAEYRKREIKPPAYSRLNVLQR 123 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGV---TQSYSCSLEQISDFRHE-MRYQFWHDFLGN 170 + LG M E+K +T +IG T++ + ++I F E ++ + + + Sbjct: 124 KYNPYLGGIRM-EYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNR 182 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVF-YTTALAQDQADGYVLTGHPVM---LQGGEYVM 226 PV G+ + D + F Y + + DG + G ++ G EY + Sbjct: 183 VHKESPVELGI-----CYNFDMGSDSFSYLIGMEAESFDG--VEGEGLVCREFDGAEYAV 235 Query: 227 FTY-----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC 281 FT E + +Q +TV+G P + E Y D ++ ++ Sbjct: 236 FTTPKVPREQFSSSIQNTWMTVFGEWFPHSGYEHAGTPEFELY----DERSNHELSEIQM 291 Query: 282 ELLIPIRR 289 ++ IPI++ Sbjct: 292 DIYIPIKK 299 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 67/106 (63%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E HL + +++VA AGYS +HL R F + G +IG+YI+ RRL+ Sbjct: 1 MDYRKALEHAVMYIENHLGSDIKVEDVAKAAGYSYYHLNRQFTAILGESIGSYIKKRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 +A + T R I+DIA++ F+S + F+RAFK + +P YR++ Sbjct: 61 DAAKKILYTNRKIIDIAMENGFESPEAFSRAFKAIYKVSPQTYRQN 106 >UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Clostridium RepID=A6M0I1_CLOB8 Length = 127 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 66/106 (62%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E +L++ + L +A KA SK+H R+F V G + YIR +RL Sbjct: 1 MNYEACIKKSIEYIENNLNKKIQLKELADKAFLSKYHFHRVFHSVVGEPVAEYIRKKRLE 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 ++A L T I+DIAL+Y+F +Q++FT+AFKK + P +R++ Sbjct: 61 EAANELLTTENKIIDIALKYQFSNQESFTKAFKKLYGIPPKEFRKN 106 >UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=Bacillus cereus group RepID=B7JL95_BACC0 Length = 299 Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 63/100 (63%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I+ + ++E HL + L+ + VA+ + S +H R+F+ G ++ YIR RRL+ +A Sbjct: 8 MIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTHAAQV 67 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L T R ++DIA+QY F SQ+ FTRAFK+ F P YR+ Sbjct: 68 LVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRK 107 >UniRef50_C1FM43 AraC-family transcriptional regulator n=2 Tax=Clostridium botulinum RepID=C1FM43_CLOBJ Length = 135 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 7/124 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +I +++ +E +L Q ++LD +A K GYSK+HL R+F + G I YI+ RRLS Sbjct: 1 MDMKDLILEIIEHIESNLGQEMNLDTIADKFGYSKFHLNRIFFENVGATIYKYIQFRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L T +PI++IA + SQQ F+ AF++ + TP YRR G+ PL L Sbjct: 61 VAAEKLVTTGKPIVEIAYDTGYQSQQAFSIAFRQFYGYTPLQYRR------IGVFIPL-L 113 Query: 121 GEFT 124 FT Sbjct: 114 KRFT 117 >UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I6N3_9CLOT Length = 288 Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 83/140 (59%), Gaps = 5/140 (3%) Query: 1 MDQAGI--IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 MD I I+ L ++E +L + + L +A +AGYS +H R+FK + G ++ Y+R RR Sbjct: 2 MDMCYINSIKKALNYIENNLQEDIDLSAIAKEAGYSLYHFHRIFKGIVGDSMKDYVRKRR 61 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 +++A L T + I++I ++Y ++S++ F+RAF+K + + P+ RR + IR P+ Sbjct: 62 FTEAAKELVYTNKSIVEIGIKYGYESREGFSRAFEKVYGRNPSEVRRDN--LLYFIREPI 119 Query: 119 RLGEFTMPEHKFVTLEDTPL 138 + ++ M + K T TPL Sbjct: 120 NV-DYMMFQLKLTTEGLTPL 138 >UniRef50_C0D9U5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9U5_9CLOT Length = 142 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 65/102 (63%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q I+R ++ ++E +L+ L L+ +AA AGYS++HL R+F TG I Y++ARRL+ + Sbjct: 4 QRDIVRQVITYIESNLEGDLDLEKIAASAGYSRFHLNRIFAGETGCTIYKYLQARRLTSA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 A L T PI IA + + SQQ F+ AFK+ + +P +YR Sbjct: 64 AEKLAKTHTPIAQIACESGYSSQQAFSLAFKRAYLCSPKVYR 105 >UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQS1_BACS4 Length = 301 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 15/169 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+D ++E H+++ ++++ + + YSK+H R+FK V G ++ Y++ R+L+ Sbjct: 1 MDYLEKIQDFSDYVEAHIEEDMNINAIINQLYYSKFHFYRVFKAVVGLSVHEYVKRRKLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-------SPEWSAFG 113 ++A L T IL IALQ+ F SQ+ F R FKK + P +R+ + + Sbjct: 61 RAADCLLHTKDSILTIALQFGFQSQEVFIRNFKKIYGVPPGKFRKVQIPMRSNNRINVES 120 Query: 114 IRPPLRL--GEFTMPEHKFVTLEDTPLIGVTQSYSCS-----LEQISDF 155 IR ++L G+ + EH T+ D L+GV S S +E++++F Sbjct: 121 IRLNMKLAKGKAIVNEH-LETINDLMLVGVIHRVSDSNPLSIIERMTNF 168 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I+R +L WLE H+++ +SLD++AA+A +S +H R+F+ V G ++ AYIR RL K+ Sbjct: 24 IMRAIL-WLEEHMNEAVSLDDMAAQAHFSPYHFHRIFRGVAGESVMAYIRRLRLEKAVHR 82 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L + + DIA +++ + F+RAF+ QF +P+ RR + G+ P LGE M Sbjct: 83 LAYGSASVTDIAFDAGYEAHEAFSRAFRAQFGMSPSALRRHVRKA--GMIPAGVLGESAM 140 >UniRef50_UPI0001789CA8 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789CA8 Length = 125 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 70/110 (63%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +++ ++ W+E +L + SL ++ + GYS ++ R F +TG + Y+ RR+S++A+ Sbjct: 7 MVQHMVDWVEANLTESSSLLKMSEQFGYSPYYCSRQFNQLTGMTLRDYVWTRRISRAALE 66 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR 115 LR T + +LDIA++Y F SQ+ FTRAF K F +PA Y+++P IR Sbjct: 67 LRDTDQRVLDIAVKYGFSSQEAFTRAFTKAFQLSPAAYQKAPRPIPLAIR 116 >UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I964_9CLOT Length = 286 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 38/306 (12%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E H+ + ++ ++VA S +H R+F +TG YIR RRLS Sbjct: 1 MNYIQSIQKSIDYMENHILEDINYEDVARHVYMSNYHFHRLFSMITGITANEYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS----PEWSAFGIRP 116 + + ++ +LDI+L+Y +DS ++F++AF + TP + RRS +++ I+ Sbjct: 61 MAGQEISMSDAKVLDISLKYGYDSPESFSKAFMRFHGVTPNIARRSGMKLKSFNSLVIKI 120 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN------ 170 L G T+ ++K V E L+ + + +E IS+ +E FW++ N Sbjct: 121 SLEGG--TVMDYKIVKKESFKLLVKVKEF--RVESISEDNNEDIPNFWNECAENGVFDVL 176 Query: 171 -APTIPPVLYGLNETRPSQDKDDEQEVF-YTTALAQDQAD---GY-VLTGHPVMLQGGEY 224 + T +YG+ +P E + F Y A+ D D GY V HP + + Sbjct: 177 KSNTTNHDIYGV--CKPIS---KESKYFDYGIAMKYDGGDVPEGYKVWDVHPTL-----W 226 Query: 225 VMFTYEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 +F G G + E ++ +P + T D E Y D + CE+ Sbjct: 227 GVFKCVGENGDCIGEMWNRIFNEFLPSSDYTMLDDIDFEFY-------KEDNNTDCFCEI 279 Query: 284 LIPIRR 289 IP+ + Sbjct: 280 WIPVEK 285 >UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Y7_9GAMM Length = 297 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 119/279 (42%), Gaps = 23/279 (8%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ L+ +E +L +++ +A S WH QR FK + G +G YIR RRL+++A L Sbjct: 8 IQTLVDRIEANLADDVNVLGLADAFHMSPWHFQRTFKSLIGDTLGGYIRGRRLTRAAQLL 67 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + R ++DIA+ F+S + F+R+FK F TP +R +P L L F Sbjct: 68 LESRRSVIDIAVSVGFNSHEAFSRSFKAYFNVTPKAFRAERPAITLREKPLLTLELF--- 124 Query: 127 EHKFVTLEDTPLIG-------VTQSYSCSLEQISDFRH-EMRYQFWHDFLGNAPTIP--- 175 +H ++ P+I + Q + +SD + ++ + W D L +P Sbjct: 125 QHLADGMDQNPVITERPEQHLIGQQIAIPSPFVSDVDYCDLLFTPWTDLLSVEAALPGRV 184 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQ----DQADGYVLTGHPVMLQGGEYVMF-TYE 230 P Y PS ++ + A Q D +G V P + MF Y Sbjct: 185 PGEYFGLMVSPSGTFTEDSLFYLAGAGVQQPIADPGEGMVALSFPAQ----QVAMFDIYS 240 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED 269 G V + + +YG +P TR G D E + D Sbjct: 241 GTEDTVAQTVDFIYGYWLPNSQYTRAGGHDYEYFENVSD 279 >UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KPU7_CLOPH Length = 294 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 62/100 (62%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I D +I +E +L LSLD +A + G SK+H R+FK +TG + Y+R R+L+ S Sbjct: 8 LIEDAVILIEDNLKTNLSLDEIAKQIGISKFHFHRIFKAITGSPLITYVRGRKLTSSLNE 67 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L I+DIA Y F+ +Q++ RAFK+ F TP+ +R+ Sbjct: 68 LLDDKLKIIDIAYDYNFEYEQSYERAFKQLFGLTPSAFRQ 107 >UniRef50_A9KM10 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KM10_CLOPH Length = 136 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 43/95 (45%), Positives = 59/95 (62%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E + ++LD++A GYSK+HL RMF + TG I YI RRL+++A L T + Sbjct: 11 YIEENFKDDITLDDIAKNVGYSKYHLNRMFLENTGLTIHKYICERRLTEAADLLLYTDQS 70 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 I+DIAL + SQQ FT AFK+ F TP YR S Sbjct: 71 IVDIALSIGYTSQQAFTLAFKQMFDCTPYKYRIST 105 >UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UL45_YERRU Length = 280 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 17/290 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++R +L W+E ++ S+ + + GYS+ L+ F +G +G Y+ RR+S++ Sbjct: 2 EGAVVRYILSWVEENIYTGASIGKLVDETGYSRRTLELWFLKYSGFPLGEYLLRRRMSRA 61 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ LR+T IL+++ + F S Q FTR+F+ TP YR+ +WS ++ PL + + Sbjct: 62 AMLLRMTELSILEVSTMFHFYSSQNFTRSFRIFSGVTPTKYRKQDKWSVKLLQRPLLMED 121 Query: 123 FTMPEHKFVTLEDTPLIG--VTQSYSCSLEQISD---FRHEMRYQFWHDFLGNAPTIPPV 177 + + L + L G V +++ L + D R + D GN I Sbjct: 122 THNLKAEHCVLPELKLRGSSVVCAHNFILPLVEDDLARRMKSAVSSIRDNSGNEVCIA-- 179 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 PS ++ + D +++ GEY+ F + GL + Sbjct: 180 ----FRIMPSASLSASRDAVINVEMIIHDMDEKKEGTEEIVIPAGEYIQFRFSGLWSEYI 235 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 F VY + + RR D+ + D+ +L C LLIP+ Sbjct: 236 VFTRLVYFKLVEE-KVCRRNSYDLIFFTYQPDSND-----DLICRLLIPV 279 >UniRef50_C8QF79 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QF79_9ENTR Length = 109 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 63/99 (63%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II DL W++ +L S+++VAA++GYS+WH+Q MFK V +I AY+R RRL ++A Sbjct: 7 IIEDLTHWIDLNLHAVHSIEDVAARSGYSRWHIQHMFKQVNRVSILAYVRQRRLERAAKD 66 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L I IAL++ F SQQ F+RAF K P+ +R Sbjct: 67 LTEGQESISAIALRHGFGSQQAFSRAFIKWQKMKPSTFR 105 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 32/293 (10%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 + ++E HL++ + L+ V+ + GYS +++ R+F V G ++G YI RRL ++ L + Sbjct: 11 ITYIEAHLNEYIGLNEVSRETGYSYYYMTRLFSSVLGESVGHYINRRRLYNASEKLIHSD 70 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH-- 128 + ++DIAL ++S + F+RAFK F +P YR++ G+ ++ + PE Sbjct: 71 QKVIDIALDCGYESSEAFSRAFKAVFGYSPVAYRKA------GLDLVIKAKKELAPEDVC 124 Query: 129 ----------KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 K + L +T + G+ + S S Q+ E + DF + Sbjct: 125 HIANHISHAPKIILLGETEVAGLRGTTSLSDNQLPGLW-EQFHGLNKDFFTTSAG----- 178 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQ--DQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 YG+ ET+ + D + Y+ + D L L+ G Y +FT+ G + Sbjct: 179 YGICETQKTAYTKD-GDALYSVMIGGPVKDFDCLPLELAKKTLRAGRYAVFTHRGTLGNL 237 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAE-DAKAGDRPINLRCELLIPIR 288 + ++GT L TR + D E + E + + D P N ++ IPI+ Sbjct: 238 YKTYQYIFGT---WLQTTREELDDREDFEVYEHEILSFDDPDN-EVKIFIPIK 286 >UniRef50_B1HZR5 Transcriptional regulator (AraC/XylS family) n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HZR5_LYSSC Length = 294 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 66/105 (62%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++ ++E L + + L+ + + GYSK+HL R+FK TG IG YIR RRL+ Sbjct: 1 MEYSQATQRIITYIEEQLMEEIELEFMPSITGYSKFHLSRIFKQETGLTIGEYIRMRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L + I+ IA +++F SQ+ FTRAFK+ +A P YR+ Sbjct: 61 VAASCLIYSNASIITIAFKFQFQSQEAFTRAFKEVYALPPGKYRK 105 >UniRef50_C9XKB1 AraC-family transcriptional regulator n=18 Tax=Clostridiales RepID=C9XKB1_CLODC Length = 294 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 7/133 (5%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E HL + L LD +A YSK+HL R F G + YI+ R+L+++A L + +P Sbjct: 22 YIEEHLSEKLDLDIIANAVHYSKYHLHRTFTTSVGLTMHDYIKRRKLTEAAKLLVFSKKP 81 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF-------TM 125 I++IAL ++SQQ FT FK + ++P YR+ E+ +R L+ Sbjct: 82 IIEIALIAGYESQQAFTSIFKAMYKKSPNKYRKEQEFYPLQLRFVLKKDNLFSKNVLELE 141 Query: 126 PEHKFVTLEDTPL 138 E K ++ D PL Sbjct: 142 KEIKLASMSDIPL 154 >UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE Length = 310 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 2/114 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++ +LD LS+D ++ + +S+W LQR+F+ TG ++ YIR +LS +A L Sbjct: 14 IHSVLDYIHNNLDIALSVDEISKASCWSRWQLQRVFQQHTGVSVAHYIRELKLSLAAERL 73 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 T+ LDIA++ F S+ F+RAFK F+++P YR++ + + G+R PL L Sbjct: 74 IHTSDRSLDIAIEMGFASEHAFSRAFKNMFSKSPRDYRKAQQLT--GLRQPLTL 125 >UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Marinomonas RepID=A6VR73_MARMS Length = 306 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D+ I +L ++ +LD+ + + ++A K+ +S+W QR+F TG ++ YIR RLSK Sbjct: 5 DRLTRIEKVLDYIHENLDESIHVSSLAEKSCWSRWQFQRVFGQATGLSVAQYIRELRLSK 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 +A L + +DIA+Q FDS+ +F+RAFK+ F TP YR+ + +G+R PL+ Sbjct: 65 AAELLLSSKNRHVDIAIQCGFDSEISFSRAFKQMFNCTPRDYRQRGK--RYGLRTPLQ 120 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 64/93 (68%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 D + ++E HLD L LD +AA A S++H QRMF+ +TG+A+ YIR RR++ +A L Sbjct: 3 DSIEYIENHLDNELLLDEIAAVACMSRFHFQRMFRMLTGYAVSEYIRNRRITVAAQELVH 62 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 + ++D+A++Y ++S ++FT+AF++ +P+ Sbjct: 63 SKSKVIDVAMKYGYESPESFTKAFRRIHGISPS 95 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 24/258 (9%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q ++++ ++ HLD+ L+L +++ S++H R+F TG + YI RL ++ Sbjct: 9 QLNRVKEVCSYIGQHLDEELNLTHLSQVGLLSRFHFHRLFLAATGMQLNRYILLLRLKRA 68 Query: 63 AVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-----IRP 116 + L + R ILDI ++ FDS + F+RAFK+ F Q+P+ +R +P+W + + P Sbjct: 69 SFRLAFESKRKILDIGIEAGFDSAEAFSRAFKRTFQQSPSQFRSNPDWPHWHSVMTLVNP 128 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQF--WHDFLGNAPT 173 P G+ + V L + P+ V Q +S + E++ E QF W G +P Sbjct: 129 P--QGDIIVD----VKLIELPIQKVAQLEHSGAPEKLM----ETAKQFIEWRKTTGLSPV 178 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGY--VLTGHPVMLQGGEYVMFTYEG 231 YG+ P+ ++ + ++ + D V+TG L GG Y + +EG Sbjct: 179 AISRTYGVPNGDPNTMAAEDFRFRFCGSVNEAVPDNEYGVVTG---TLAGGCYAVIRHEG 235 Query: 232 LGTGVQEFILTVYGTCMP 249 ++ I + +P Sbjct: 236 SHDAMESSIYGFFREWLP 253 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 75/115 (65%), Gaps = 2/115 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ ++ +LD+PL++ +A + +S+W LQR+F++ T H + Y+R ++LS++A L Sbjct: 13 VEKIVDYIHQNLDKPLTVTELADISCWSRWQLQRVFQEQTNHNLAQYVREQKLSRAAEQL 72 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + + DIAL + F+S+ +F+RAFK+ FA +P YR + + GIR PL + Sbjct: 73 LKSDQKVTDIALDFGFNSEVSFSRAFKQLFAISPRQYRLVGKLN--GIRLPLVMS 125 >UniRef50_A6M0H0 Transcription activator, effector binding n=2 Tax=Clostridium RepID=A6M0H0_CLOB8 Length = 297 Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 8/149 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I + + ++E +L +SL +++ G SK++L R+FK +TG +I Y++ R+L+ Sbjct: 3 DLKETIIETVAYIEDNLYNKISLADISLHTGISKYYLHRIFKSLTGESIMEYVQGRKLTS 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS-------AFGI 114 S L T I+DIAL+Y FD +Q++ RAFKK F TP L RS + S Sbjct: 63 SLNELINTTMRIIDIALEYGFDYEQSYIRAFKKCFGHTP-LKIRSDKISLSLILKEKINC 121 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQ 143 L +G +FV + LIG+ Sbjct: 122 NDILSIGNSITYNPQFVFKQKFNLIGIKH 150 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 18/284 (6%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E HL +S+ +AA + YS +H R+FK + G Y+R RRL+ +A L Sbjct: 10 YIEQHLYDKISVHQIAAASHYSTYHYSRVFKALVGDTPKEYLRKRRLTMAAKRLLTEEVG 69 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK--- 129 ILD+A+ +FDSQ+ FTRAFK F TPA YR+ E + + + + +++ Sbjct: 70 ILDLAMDCQFDSQEAFTRAFKALFNMTPAQYRKMNEPFRLLYKNQINEDDLSFLQNRISM 129 Query: 130 ---FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRP 186 +T L+G+ Y+ E +S R + + D + N + +G+ E Sbjct: 130 EPEIITQPAIKLVGIANQYTD--EDLSLPRLWSGFAPYRDTIAN--RVGDEFFGIYE--- 182 Query: 187 SQDKDDEQEVFYTTALAQDQADGYVLTGHPVM-LQGGEYVMFTYEGLGTGVQEFILTVYG 245 S ++ +E F A+ + V G + Y FT++G ++E + ++G Sbjct: 183 SYEEAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWG 242 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + +P + D E YPA A P N + L IP+R+ Sbjct: 243 SWLPKSAYEYEEKPDFE-LYPAGFNDAD--PEN-KLYLNIPVRK 282 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I ++L ++ H+D PL ++A A +S +H QR F TG+ + Y+ RL K+ L Sbjct: 22 IENVLTYINEHIDHPLLATDLADVACFSVFHFQRAFTLYTGYNVAEYVLLTRLRKAVYEL 81 Query: 67 RLTARP---ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 R RP +LDIAL F Q+FTRAFK+QF Q P+++R+ Sbjct: 82 RY--RPSMSVLDIALSCGFSHHQSFTRAFKRQFCQAPSIFRK 121 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 12/128 (9%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I+ +L++++ +L + L L VA KAG S +H RMFK+V G + Y+ +L K+A A Sbjct: 22 IVIPILVYIQANLHEDLDLKVVAKKAGLSPFHFHRMFKNVVGETLKQYVLRIKLEKAAFA 81 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L+ IL I+ + F + ++FTRAFK++F TP YR+ R GE ++ Sbjct: 82 LKYWDEKILSISNELGFKNPESFTRAFKREFQYTPKDYRQQ-----------FRKGELSL 130 Query: 126 PE-HKFVT 132 E H F+ Sbjct: 131 EERHSFLN 138 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 2/120 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++ +LD PL L +A ++ +S+W LQR+F TG + Y+R +LS++A AL Sbjct: 47 IERVLDYIHANLDLPLGLAELAEQSCWSRWQLQRVFLHETGLTVAHYVRELKLSQAAEAL 106 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + +LD+AL Y F S+ +F+RAFK+QF +P YR+ G+R PL P Sbjct: 107 LSGRQRVLDLALCYGFGSEVSFSRAFKQQFGCSPLAYRK--RGLRLGLRTPLVRAALPQP 164 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 41/273 (15%) Query: 9 DLLIW-LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 D LIW +E L++ L+L ++ + S H+ R+F+ TG +I +Y+RARRLS +A + Sbjct: 5 DKLIWQIETDLNKDLTLTVLSDRCAISTHHMCRLFQLSTGLSIMSYVRARRLSMAADTIA 64 Query: 68 LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG-----E 122 IL AL + S + FTRAF F P+ R++ S+ + PL++ E Sbjct: 65 RHDGDILTAALDAGYGSHEAFTRAFANYFNALPSTVRKARSTSSLDLMEPLKMKNDMFVE 124 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 PE + + V S CSLE N TIP + N Sbjct: 125 VQPPEMR----RADAFMVVGLSTPCSLE-------------------NNSTIPALWQRFN 161 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYV-------LTGHPVM----LQGGEYVMFTYEG 231 R S+ ++ Y A D+A LT P M L Y +FT+ G Sbjct: 162 -LRESEVEEVVSGAAYGVCSAADEAGNCTYLAGVKALTKTPGMDYIELPAQSYAVFTHNG 220 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERY 264 + + + T++ +P L D ERY Sbjct: 221 HISDLPRTVYTIWNKALPEAGLKTADSPDFERY 253 >UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY67_CLOB8 Length = 291 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 63/104 (60%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + D + +LE HL + +SL+ +A + +SK+H R+FK V G IG Y RRL+ Sbjct: 1 MNTKNYVLDAIEYLEKHLLEGVSLEQLAKQFNFSKFHYARLFKAVLGENIGDYQMKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +A++L T IL+IA+ + SQ++FTR FK F TP YR Sbjct: 61 IAAMSLLETRDSILNIAIMCGYSSQESFTRMFKAYFGITPKDYR 104 >UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Clostridium difficile RepID=Q18D16_CLOD6 Length = 303 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ L +E +L + +S++ +A KA S ++ QR+FK + + YI+ RRL++++ L Sbjct: 7 IQITLDLIEANLSEEISINELANKANLSPFYYQRLFKRLVNKTVMEYIKLRRLARASEYL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 ILD+AL + F S +TFTR+FKK + TP YR +P I+P L L + M Sbjct: 67 AEHKNRILDVALNFGFASHETFTRSFKKAYGLTPEKYRANPVKLNHFIKPELILN-YAMV 125 Query: 127 EHKFVTLEDTPLIGVTQ 143 + + D +I V + Sbjct: 126 DEGVPLIADDIVIEVNR 142 >UniRef50_C4X996 Regulatory protein n=4 Tax=Klebsiella RepID=C4X996_KLEPN Length = 176 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 63/116 (54%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +++ ++ W+E H+ LS+ +A K+GYS W+ QR F VTG + +Y+ R+++ + + Sbjct: 30 VVQGIVDWIEAHIFDTLSVSAIAKKSGYSHWYFQRQFAMVTGCTLASYVSRRKMTIATIY 89 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 L T I I+ ++ Q F R F + F +P YRR ++ PLR+G Sbjct: 90 LTQTQASIQSISQCLGYEGQAAFCRTFHRHFGMSPTRYRRDTPGKESNLQYPLRVG 145 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 1/102 (0%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +A I+R L+ ++ HLD+ LSL+++AA A YS H R+F+ + G + Y+R R+ ++ Sbjct: 9 EAKILRVQLL-IQHHLDEDLSLEHLAAAADYSPCHFHRIFRGIVGESADDYVRRLRMERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 A +LR R +LDIAL + S + FTRAF + F TP+ Y+ Sbjct: 68 AQSLRYRRRSVLDIALDAGYGSHEAFTRAFVRTFGVTPSDYQ 109 >UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=Bacillus RepID=C3LC07_BACAC Length = 296 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 60/93 (64%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E + + +L N+A AG+S+ H R+F+ + G + Y+R RRL+++A L T Sbjct: 14 YIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEK 73 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 I+DIA ++ F S +TFTRAFKK F TP+ YR+ Sbjct: 74 IIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRK 106 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 7 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I ++ ++E HL ++ + L+++A+ YS++HL RMF V G + Y+ RRL+++A Sbjct: 26 IAAVIDYIEEHLMEEKMDLESIASIFHYSRYHLHRMFASVAGFPLHTYLTRRRLTEAARL 85 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 L T RP+L+IAL +++Q++F+RAF+K F +P+ YR+ ++ Sbjct: 86 LVWTDRPVLEIALASGYETQRSFSRAFQKYFQHSPSRYRKKGDF 129 >UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787EAC Length = 447 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 62/106 (58%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I++ + ++E HL +PL+L+ +A A S +L R+F +TGH + YIR RR+S Sbjct: 1 MQTGEIVQRAIDFVEDHLTEPLALEEIAGVAAMSLPNLYRLFHSITGHPVKEYIRKRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 ++A LR T P +DI + F+S F + FK+ TP YR++ Sbjct: 61 EAASCLRNTDLPTIDIGYRCGFESYPAFMKTFKRCTGLTPGAYRKA 106 >UniRef50_C6LAX2 Regulatory protein SoxS n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LAX2_9FIRM Length = 167 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 61/98 (62%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 D+L ++ H + +SL +VAA+ G K+ L R+F +V G + Y+ + RLS + L Sbjct: 52 DILTYIANHYREDISLSSVAAQFGTGKFVLSRIFSNVLGVSFTDYVNSLRLSHAQHLLAS 111 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 T R ILDIAL+ + +QQTF R FK +F+ TP +R+S Sbjct: 112 TDRNILDIALECGYHNQQTFNRVFKARFSCTPKEFRKS 149 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 124/295 (42%), Gaps = 28/295 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D A + +L ++ HLD P+ L ++A A +S +H R+F + G ++ ++IR RL + Sbjct: 11 DHAERMDRVLEHIQAHLDDPMQLLDLADIACFSPYHFHRIFSGMIGESVKSHIRRLRLER 70 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A+ L+L P+ DIA Q F++ ++FTRAF F +P +R++ + Sbjct: 71 AAITLKLGEAPVTDIAFQAGFETHESFTRAFNAMFGLSPQRFRQA-HHGTLDHKHCNYWK 129 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 E M E V LE+ ++ V + D H W G A P L Sbjct: 130 EIVM-EASVVNLEEMNVVFVRHTGP-----YKDCNHA-----WSTLCGWAG--PRGLVNA 176 Query: 182 NETRPSQDKDD-----EQEVFYTTALAQDQADGYVLTGHPVMLQ---GGEYVMFTYEGLG 233 + + DD E ++ Y + G P+ ++ GG Y ++G Sbjct: 177 DARILALCHDDPDVTPEDKIRYDACIT---VAGQTEVQAPIGMKTIAGGRYAKTLHKGPY 233 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + + + G P G IE Y D A P LR E+ +P++ Sbjct: 234 SDLHKTYAQLCGQWAPQNGCEADAGASIEIYLNTPDKTA---PEELRTEVYVPLK 285 >UniRef50_B0MIQ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MIQ9_9FIRM Length = 167 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 64/102 (62%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q I+ ++ ++E ++ +S+D +A GYSK++L R+F + TG I Y+++RRL+ + Sbjct: 29 QKEIVEKVVNYIEDNIKSEISVDIIAKNIGYSKFYLNRIFSERTGITIYKYLQSRRLTIA 88 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 A L T PI +IA + +DSQQ F+ AFK+ + P +YR Sbjct: 89 AEKLIKTNEPITEIAYEAGYDSQQAFSLAFKQLYVYPPKIYR 130 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 31/245 (12%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L ++E +L + ++L+ +A A +S +H R+F+ + G ++ YIR RRL+ Sbjct: 1 MDYVVCIQRTLDYIEENLQEQMTLEQLAKIACFSPFHYHRVFQAIVGESVMDYIRKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L T ++ IA++ F Q++F RAFKK + +P YR + S PLR Sbjct: 61 CAAERLFYTDEKVITIAIEVGFQYQESFNRAFKKIYGVSPRQYRNAKRISG-----PLRG 115 Query: 120 ---------LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 LG M E KFVT +IG Y + ++ +FW +L N Sbjct: 116 KACLDKKLWLGGHKM-EPKFVTKPAFHIIG----YELKTKNADGQNNKDIPEFWQHYLKN 170 Query: 171 --APTIPPVLYGLNETRPSQDKDDEQ-EVFYTTALAQDQA----DGYVLTGHPVMLQGGE 223 TIP L+ E + + E E Y + ++ +G V P + E Sbjct: 171 KLGCTIPNPLHKHVELGICTEFNPETGEFVYVIGMEVEKGTKAPEGMVYKSFPEL----E 226 Query: 224 YVMFT 228 Y +FT Sbjct: 227 YAVFT 231 >UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C368D7 Length = 320 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 63/99 (63%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++E HL + ++ + +A AG S ++ QR+FK +TG + Y++ RRL+ +A AL Sbjct: 7 IDGVLDFMEEHLREEMNTEALAQSAGLSPFYFQRLFKRLTGRPVLEYVKMRRLALAASAL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 + ILDIA+ Y F S +FTRAFK+ + +P YR+ Sbjct: 67 EDREKRILDIAVDYGFSSHASFTRAFKEAYGISPEKYRK 105 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 2/97 (2%) Query: 12 IW--LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +W +E L++ + L+ +A GYS WH R FK V I YI+ RL K+A L+++ Sbjct: 13 VWKQIEEQLEKEIGLNQIAFLTGYSDWHFHRFFKSVQKENIKTYIKRLRLEKAAYELKIS 72 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 PIL+I ++ F S + FT+AFK+ TP+ +R+ Sbjct: 73 NFPILEIGMEAGFSSHEAFTKAFKRVIGITPSEFRKK 109 >UniRef50_P26950 F1 operon positive regulatory protein n=19 Tax=Yersinia pestis RepID=CAF1R_YERPE Length = 301 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 130/283 (45%), Gaps = 22/283 (7%) Query: 7 IRDLLIWLEGHLDQP-LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 + ++ ++E +L+ +++D + +G+S+ +LQ FK+ G IG YIR RR S++A Sbjct: 7 VNSIIQYIEENLESKFINIDCLVLYSGFSRRYLQISFKEYVGMPIGTYIRVRRASRAAAL 66 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG-EFT 124 LRLT I++I+ + +DSQQTFTR FKK F TP YR P WS G+ + E+ Sbjct: 67 LRLTRLTIIEISAKLFYDSQQTFTREFKKIFGYTPRQYRMIPFWSFKGLLGRREINCEYL 126 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 P + L++ +IG ++ L S + R +D L I ++ Sbjct: 127 QP--RICYLKERNIIGQCFNFR-DLVFYSGIDSKCRLGKLYDSLKKNTAIT-----VSNR 178 Query: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVY 244 P DK ++ + D+ + + + + G Y F + + +Y Sbjct: 179 IPFHDKTND---IIARTVVWDRNKHF--SDSEIKVDKGLYAYFFFNDTYDQYVHHMYNIY 233 Query: 245 GTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P+ NL +R G D+E + D I+ C +PI Sbjct: 234 YNSLPIYNLNKRDGYDVEVI-----KRRNDNTID--CHYFLPI 269 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L ++ HLDQPLSL+++A + S+W LQR+F+ TG + Y+R +LS +A + Sbjct: 10 IERVLNFIHTHLDQPLSLEDIAEHSQCSRWQLQRIFQQQTGLNVAQYVRELKLSIAADKV 69 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 +LDIA + F+S+ +F+R+FK+ F +P Y+R GIR LR Sbjct: 70 LSGQSRMLDIAYELGFNSEVSFSRSFKQLFGVSPREYQRR------GIRVGLR 116 >UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RX40_9CLOT Length = 140 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 63/104 (60%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 +Q +R ++ ++E HL++ L+L+ +A AGYS++HL R+F + TG I Y++ RRL+ Sbjct: 3 NQKHTVRKVIDYIEEHLEEKLNLEQIAEHAGYSRFHLNRIFMEETGGTIHKYVQERRLTM 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L T I IA + SQQ F+ AFK+ + P YR+ Sbjct: 63 AAEKLVDTDMDITQIAYDAGYQSQQAFSLAFKQVYLCPPGAYRK 106 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/279 (20%), Positives = 123/279 (44%), Gaps = 10/279 (3%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +LI ++ +LD+PL+++ +A A S +H R+F G + Y+R RL ++A + T Sbjct: 24 VLIHIQKNLDEPLTIERLAEVACLSPFHFHRIFSAHVGETVTGYVRRLRLERAATRIAFT 83 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 + D AL +++ FTRAF+++F +P+ +R + E + + + Sbjct: 84 GESVTDTALGVGYETPAAFTRAFRERFGMSPSEFRGQQRETILSFAENSTAKEIIVMKPE 143 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 T ++ V ++ + + + M + + + + T ++ G+ P+ Sbjct: 144 MREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLM----TGETLMVGIGHDDPAIT 199 Query: 190 KDDEQEVFYTTALAQD-QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 +++ + D + +G V + GG Y +F ++G TG+ E ++ + Sbjct: 200 AEEKIRYDACVTFSGDVKPEGEVGIQ---TIAGGRYAVFLHKGAYTGLPEIYRNIFAGWL 256 Query: 249 PMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 T R E Y + + +P NLR E+ +P+ Sbjct: 257 ATSGCTLRDQPCFEVYLNRDPRRT--KPENLRTEIWVPV 293 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 3/99 (3%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++ HL+ LS++ ++ A +SK+H R F TG +G ++ +RL +++ L +P Sbjct: 19 YILAHLNDDLSVEKLSEVACFSKFHFHRQFSTYTGMTVGKFVLMQRLKQASKQLAFN-QP 77 Query: 73 --ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 ++DIAL+ F+S + F+RAFK F QTP+ +R+SP W Sbjct: 78 MRVIDIALEAHFESPEAFSRAFKNTFGQTPSQFRQSPNW 116 >UniRef50_Q12PA0 Transcriptional regulator, AraC family n=1 Tax=Shewanella denitrificans OS217 RepID=Q12PA0_SHEDO Length = 209 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 63/99 (63%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +A II + ++ H DQ +SLD +A+ +G+SK+H R+F TG+ +G +I+ +L K+ Sbjct: 9 KAKIISQVGQYIYDHSDQTISLDALASYSGFSKYHFNRIFFAATGYQLGEFIQRHKLDKA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 ++ I+D+A+ +DS +F+RAFKK F+ TP+ Sbjct: 69 LQLIKQGNHNIIDVAISVGYDSPSSFSRAFKKNFSVTPS 107 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 13/267 (4%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 L ++E H + L+LD +A S++HL R F+ TG ++ Y+R RRLS++A L A Sbjct: 12 LWFIESHFARELTLDEIANCGCVSRFHLARAFEAATGFSVMRYVRGRRLSEAARRLASGA 71 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKF 130 IL +A+ + S + FTRAF++QF TP R + P+++ E + + Sbjct: 72 PDILAVAIDAGYGSHEAFTRAFREQFGLTPDALRARGHLDNLALVEPIKMDETLLTRLEP 131 Query: 131 VTLEDTP---LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP-TIPPVLYGLNETRP 186 ED + G+ + Y+ E + + +Q + D+ G P + V YG+ Sbjct: 132 PRFEDGKAFLVAGLNERYTN--ETCAAIPSQ--WQRFGDYFGKVPGQVGNVAYGV----- 182 Query: 187 SQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGT 246 + DD + Y + + + Y +F++ + ++ T++ Sbjct: 183 CYNADDNGNIDYLCGVEVSDFSALPAELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQ 242 Query: 247 CMPMLNLTRRKGQDIERYYPAEDAKAG 273 +P + ERY D +G Sbjct: 243 WLPASGHIPADAPNFERYDAKFDPVSG 269 >UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LX8_CLOAB Length = 288 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 26/298 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ G + + L ++E +L++ + VA A SK++ R+FK +TG +G YIR R+LS Sbjct: 1 MNWIGDMNNALRYVEENLERNIESGEVANAAHMSKFYFLRIFKILTGMTLGDYIRERKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + + T + I+DI+ +Y +++ + FT+AFK+ +P R+S + PPL Sbjct: 61 LATKDIVSTNQKIIDISYKYGYETPEAFTKAFKRLNGISPTEARKSK--NNLKAIPPLSF 118 Query: 121 -----GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL--GNAPT 173 GE M +K T + + GV++ S ++ ++F+ + +FW + G Sbjct: 119 QVIVKGEENM-NYKIETKKSFKIAGVSK--RISTKEGNNFK--IIPEFWDEVKKSGQCEI 173 Query: 174 IPPVLYGLNETRPSQDKDDE-QEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 I L + D E QE Y A+ D+ +G + V+++ E +E + Sbjct: 174 IEKNAGKLGVMGVCTNFDCEYQEFDYLIAVEGDKIEG---LDNYVVIEVPELSFAVFESI 230 Query: 233 G---TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G +Q+ ++ P +G +IE Y P + + R E+ +P+ Sbjct: 231 GPMPDALQDVTRRIFSEWFPATKYEEAEGPEIEVYLP-----GNPQDKDYRAEIWVPV 283 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 62/95 (65%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L+ ++ +LD+ +SLD +A A +S++H R+F+ +TG +G ++R +L ++A LR T Sbjct: 45 VLVHIQRNLDRAMSLDELADVAAFSRFHFARIFRAMTGETVGEHVRRLKLERAAGKLRHT 104 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + + +IAL FD+ + F+R FK QF P+ +R Sbjct: 105 RQTVTEIALDAGFDTPEAFSRTFKAQFGDPPSRFR 139 >UniRef50_A8MLY7 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MLY7_ALKOO Length = 308 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II + L ++E ++++P+ +++A AGYS +H RMFK G I Y++ R+L +++ Sbjct: 9 IIFNSLKYIETNINEPIMAEDIAKNAGYSLYHFSRMFKKQMGLPIMEYVKERKLIRASEE 68 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + + + I+D AL Y + S FT+AFK +F +PAL R Sbjct: 69 I-VNGKKIIDTALNYGYQSHSGFTKAFKNKFGFSPALLR 106 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 72/112 (64%), Gaps = 2/112 (1%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 + ++ +L LSL+++A ++ +S+W LQR+F+ TG + Y+R +LS++A L Sbjct: 1 MAYIHANLSSALSLEDLATQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDGK 60 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 ++DIAL F+S+ +F+R+FK+ F +P+ YR++ + G++ P+++ E Sbjct: 61 DRVIDIALGLGFNSEISFSRSFKQMFGVSPSQYRKAGK--RVGLKKPIQVSE 110 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 125/279 (44%), Gaps = 14/279 (5%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++ HLD PL L+ +A A S +H QR+++ + G +I +R R+ +++ L TARP Sbjct: 26 YISAHLDGPLDLNRLAEVACLSPYHWQRVYRALYGESIVLTVRRMRIVRASEDLVCTARP 85 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PLRLGEFTMPEHKF 130 + +IA + + S F RAF+ + PA +RR+ RP PL+ GE M +H+ Sbjct: 86 LDEIARRAGYGSTHAFARAFRDAYGVLPAQHRRTGTH-----RPIYPLQRGEADMFKHEV 140 Query: 131 VTLEDTPLIGVTQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 L G +++ + ++ D F + H +G + + Y +T P + Sbjct: 141 EIRRLPALRGYAVTHTGAYMKVGDAFERIGAWVGQHGLIGPGAKMIGIFYDDPDTTP-EA 199 Query: 190 KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMP 249 + + F A D A V V + GGEY + + G ++ +YG Sbjct: 200 QLRAKACFMPADGAPDIAP--VPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGD--- 254 Query: 250 MLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L + R+ D + + P +LR E+ +P+R Sbjct: 255 WLRHSGREAADAPPFELYLNTPMDTAPADLRTEIHLPLR 293 >UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Bacteria RepID=C3RPB0_9MOLU Length = 286 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 65/115 (56%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ L ++E + D+ + +D +AA A SK++ QR+F +T + Y++ RRL K+A L Sbjct: 7 IQVTLDYIEENYDKEIDIDKLAAIAHLSKYYYQRLFFRLTKKTVNDYVKLRRLEKAANQL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + T + ILDIA+ F FTRAFK+ + TP YR I+P L+L Sbjct: 67 KNTEKRILDIAIACGFSGHSAFTRAFKEVYKITPDDYRNQKIHLDHFIKPDLQLN 121 >UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR2_ECOSE Length = 276 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 25/285 (8%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I++ +++W+E +++ + +++VA GY + ++Q +FK ++G YIR R+++++A Sbjct: 11 IVQHIILWIEDNIESTIKIEDVATITGYCRRNVQLIFKRYVHISLGEYIRRRKIARAAAL 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE--- 122 L+ + ++DI+++ FDSQQ+FTR FKK P YR W+ + PP G+ Sbjct: 71 LKTSTLNLIDISIRLHFDSQQSFTREFKKILGVPPQKYRNRNYWNLPYLCPPYIWGKAIS 130 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 FT E + L + G +YSC R E + + + I YGL Sbjct: 131 FTFLELSEMVLTTDVIPG---NYSCF------SRKETIMSYIDKYKADVYCISG--YGLQ 179 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + D D Y D+A LT + G Y F Y+G Sbjct: 180 QKIGDLDYRDN----YIATTKNDKAHCKKLT-----IPSGLYAKFLYKGTWRDFLRLPKY 230 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y T +P L DI + P DA + C IP+ Sbjct: 231 LYLTLLPAHGLAHMDACDI-IHIPYPDAGLVKNN-EIECTYYIPV 273 >UniRef50_D1P760 F1 operon positive regulatory protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P760_9ENTR Length = 292 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 13/263 (4%) Query: 1 MDQAGIIRDLLIWLEGHLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M + I+ + ++E +++ + + ++ + + +GYS+ +LQ++FK+ G +IG YI+ RR+ Sbjct: 1 MIKNLIVNSVTQYIEENIEIKHIDIEGLVSYSGYSRRYLQKIFKNKIGFSIGKYIQLRRI 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 S++AV LRLT+ + I+ + +DSQQTFTR FKK TP YR + + G+ Sbjct: 61 SRAAVLLRLTSLSLSSISTRLCYDSQQTFTREFKKNTGYTPLQYRNNKLLTFQGMIGHRD 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + P K ++ + G + L + + ++R + + L +A T+ Sbjct: 121 TNDL-FPYPKLYHIDKKTIDGFLFKHKEKLPYTGE-QSKVRLREINKRLISAKTVYL--- 175 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 + S KD V TT + + + G Y F + G F Sbjct: 176 ---SNKISLGKDFNNGVLITTIIWTNSEQ----VNTQFEINSGLYAGFLFTGSHKSYSHF 228 Query: 240 ILTVYGTCMPMLNLTRRKGQDIE 262 I +Y +P NLT+R DIE Sbjct: 229 IYHIYMNLLPFYNLTKRDEFDIE 251 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 59/98 (60%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + + +++ HL L+LD +A + +SK+H R+F VTG AYI +RL+++A L Sbjct: 8 VDQVCKYIDAHLHHKLNLDQLAELSHFSKYHFSRIFASVTGETPFAYITKQRLARAAAYL 67 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 R T + +L+IAL F+S +F AFKK F +TP R Sbjct: 68 RETNQSVLEIALGCGFESASSFNAAFKKHFGRTPTEMR 105 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 38/263 (14%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 ++ HLD+ + + +A AG S H R+F+ +TG ++ ++R RL ++A+ L+L P+ Sbjct: 18 VQAHLDEDVDPETLADIAGLSLHHFHRVFRGLTGESVMGFVRRLRLERAAMQLKLGEAPV 77 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTL 133 +AL+ + S + FTRAF+ +F P YR E +P V L Sbjct: 78 TQVALEAGYGSHEAFTRAFRNRFGVPPRAYREQTRVEV----------EVGVPR---VEL 124 Query: 134 EDTP---LIGV--TQSYS-CSLEQISDFRHEMRYQFWHDFLGNAPT---IPPVLYGLNET 184 D P IG+ T SYS C Q W + + +A +P VL + Sbjct: 125 RDDPALTCIGLRHTGSYSECG-------------QTWGELMAHAAKAGWMPHVLGSVGLA 171 Query: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ---GGEYVMFTYEGLGTGVQEFIL 241 D + + Y + + A L P +L+ G Y + + G + E + Sbjct: 172 YDDPDITAAERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYV 231 Query: 242 TVYGTCMPMLNLTRRKGQDIERY 264 + G +P + IERY Sbjct: 232 GLIGRALPFRGVELANEPVIERY 254 >UniRef50_A9IAC9 Transcriptional regulator, AraC family n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IAC9_BORPD Length = 268 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 62/99 (62%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I++++ W+EG+L + ++++ ++ + S+ L R F+ TG ++ Y RR+ K+A+AL Sbjct: 162 IKEIMSWIEGNLTEHITIERISDQFAISRSLLTREFRGHTGKSLVGYCNGRRVQKAAIAL 221 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 T P++DIAL F + F R FK +F TPA++RR Sbjct: 222 ATTEAPVIDIALDCGFSNISHFHRQFKSRFGITPAVFRR 260 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 13/257 (5%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L ++ +LD LSLD +A A S++H R+F VTG + +IR RL ++ + L + Sbjct: 12 VLDYVYDNLDGDLSLDTLADVAALSRFHFHRVFTAVTGEPVAHFIRRVRLHRAGLELLSS 71 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 P+ ++A + +D+ ++F+R+F+ F +TP+ +R + PPLRLG + Sbjct: 72 DAPVAEVAAKMGYDNARSFSRSFRDAFGRTPSEFRAHAQPV-----PPLRLGTSGETQMY 126 Query: 130 FVTLEDTPL--IGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPS 187 V +ED P +GV + QI + + LG P + +L G+ P Sbjct: 127 DVKIEDQPARRLGVIDHRGPYI-QIGEAFEKAGSTVMARGLG--PHLGAML-GIYFDDPE 182 Query: 188 QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTC 247 +++ D+A V L+GG++ + T+ G TG+ + ++G Sbjct: 183 NGA--AEDLRSAAGFEMDEAAEITPPLREVRLEGGKHAILTHTGPYTGLAQAYKYLFGEW 240 Query: 248 MPMLNLTRRKGQDIERY 264 + R+ E Y Sbjct: 241 LATAGEMPREAPPFELY 257 >UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp. PE36 RepID=A6FJ46_9GAMM Length = 312 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/97 (39%), Positives = 60/97 (61%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I LL ++ ++DQPLS++ +A K+ +S+W LQR+F TG + Y+R +LS +A L Sbjct: 15 IGKLLDFINENIDQPLSVEQLADKSCWSRWQLQRVFHHETGLNLAQYVRELKLSLAAEQL 74 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY 103 + ++DIAL F S+ +F+R FK FA +P Y Sbjct: 75 LGSKSRVVDIALALGFSSEVSFSRTFKNMFAYSPMAY 111 >UniRef50_C1FTY8 Transcriptional regulator, AraC family n=16 Tax=Firmicutes RepID=C1FTY8_CLOBJ Length = 321 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 64/102 (62%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I+ ++ ++ + D+ L+L ++ + GYS+++ R FK+++G Y+R R+L+ + Sbjct: 11 IVDEIDKCIKNYNDEALTLRFLSRRLGYSEFYTTRKFKEISGMQFRDYLRHRKLAFALKE 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 +R + + ILDIA Y F S + FTRAFK+ + TP+ YR+ P Sbjct: 71 VRDSEKSILDIAFDYGFSSHEAFTRAFKRTYGVTPSEYRKKP 112 >UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9YCD3_9FIRM Length = 310 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 60/94 (63%), Gaps = 1/94 (1%) Query: 13 WLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 71 ++E HL D+ L L+ V A GYSK+H R+F +TG + YI+ RR+S++A L TA Sbjct: 32 YIEEHLQDETLDLNAVTAAVGYSKYHWHRLFTALTGVPVHRYIQRRRMSEAARRLVFTAD 91 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 PIL IAL + +Q++F+R F+ + +P YRR Sbjct: 92 PILRIALDSGYQTQRSFSRQFQAVYHCSPKRYRR 125 >UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=Clostridium RepID=A7FVD8_CLOB1 Length = 294 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 67/105 (63%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ ++ + L ++E +L +++D+++ A S++H QR+F +TG + YI+ RRL+ Sbjct: 1 METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L T R I+DIAL+Y ++S + FT+AFK+ +P+ ++ Sbjct: 61 LAAEELVSTDRRIIDIALKYGYESPEAFTKAFKRLHGISPSALKK 105 >UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1I3_ERYRH Length = 288 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 62/99 (62%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +++ + ++E HLD L L+++A + YS +H +F +TG + Y+R RRLS++ + Sbjct: 13 LQNAIDYIETHLDSSLKLEDIAIHSNYSPYHFHNLFSALTGMGVMDYVRRRRLSEAGMLF 72 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 ++D+A+ Y ++S ++F++AFKKQ TP+ ++ Sbjct: 73 ISQKVKVIDLAVHYDYESAESFSKAFKKQHHYTPSEIKK 111 >UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N339_9FIRM Length = 211 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 95/182 (52%), Gaps = 18/182 (9%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I + L ++E HL + + + +VA +A S ++ Q+ F+ + G ++ YIR RRLS + + Sbjct: 7 ISNALKYIEEHLKEDIKIVDVANEAYVSSFYFQKAFRILCGFSVAEYIRYRRLSLAGSEV 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 T + I++IAL+Y +DS +FT+AF + TP + R+ E PL++ +FT+ Sbjct: 67 ITTNKKIIEIALEYGYDSPDSFTKAFTRFHGVTPTVARK--EQLMIKSFAPLKI-QFTLK 123 Query: 127 -----EHKFVTLEDTPLIGVTQ--SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 ++K + E ++G + + C+ +I +FW + + +A +Y Sbjct: 124 GGSTMDYKIIEKEAFTVLGKARRFDFDCAFNEIP--------KFWGEHMQSADKKVCGVY 175 Query: 180 GL 181 G+ Sbjct: 176 GV 177 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 16/188 (8%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR- 71 +++ HLD+ L +D ++ A SK+H R+F G + +I+ RL +++ L Sbjct: 14 YIQRHLDEDLDVDRLSQIAALSKFHFHRIFAIHVGLNVMKFIQLSRLKRASFQLAFEPDL 73 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKF- 130 I++IALQ FDS + FTRAFK+ F QTP +R P+W ++ + FT+P+ + Sbjct: 74 KIIEIALQAGFDSPEAFTRAFKRSFDQTPRAFRDKPDWESWHQK-----FVFTIPKSELK 128 Query: 131 --VTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIPPVLYGLNETR 185 V + + P + S+ S +++ E QF W G +P YG+ Sbjct: 129 MNVNIVERPAEKIAYLSHLGSPDKVL----ETAAQFIAWRKETGLSPVTKSKTYGIPFAD 184 Query: 186 PSQDKDDE 193 P Q DE Sbjct: 185 PDQTPADE 192 >UniRef50_UPI0001973804 AraC-family transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973804 Length = 329 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 58/99 (58%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I+ + L ++E +LD L L VA+ SK+HL R F G I Y+R R+L+++A Sbjct: 51 IVSEALFYIEENLDSRLDLQTVASALHCSKYHLHRSFAKTAGLTIHDYVRRRQLTEAARL 110 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L + +P+++IAL ++SQQ F +FK + TP YR Sbjct: 111 LVFSKKPVIEIALMSGYESQQAFAGSFKSMYKMTPGEYR 149 >UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PRW6_9CLOT Length = 286 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D ++ L+ ++E +L LSL++++ YS ++ QR+F VT +I YI RRL + Sbjct: 3 DYLSVVNLLIEYIEENLQSDLSLESLSKLVNYSTYYTQRIFSTVTCMSIHDYITERRLIR 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL- 120 + + L I+D+AL+Y + S FT+AFKK+F P+ ++ E + PLR+ Sbjct: 63 AGEEI-LNGGKIIDVALKYGYSSHNGFTKAFKKKFGLLPS---KADECLDITVDKPLRIL 118 Query: 121 --------GEFTMPEHKFVTLEDTPLIG 140 G + HK + LE+ L G Sbjct: 119 ERDFYNKDGNLCIC-HKLIYLEELVLWG 145 >UniRef50_B8K8Q9 Transcriptional regulator, AraC family n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K8Q9_VIBPA Length = 441 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 66/125 (52%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q I ++ +E L L ++ +A S+WHLQ FK TG +G Y R R L+ Sbjct: 1 MRQFCFILRIVEAVETRLPCKLEINALADTLNVSRWHLQHEFKRYTGIPLGRYYRLRLLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + AL + R +LDIAL Y F+SQ+ RA ++ F +P ++R+P + + PP+ + Sbjct: 61 LAMKALACSERNVLDIALDYGFESQEALYRAVRQNFLISPKHFKRNPTLAKYFGVPPIDI 120 Query: 121 GEFTM 125 T Sbjct: 121 SYLTF 125 >UniRef50_D1PQS2 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQS2_9FIRM Length = 291 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 57/96 (59%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 L ++ H + LSLD +A +AG+SK+H R+FK++TG Y+ RRL + L Sbjct: 186 LCNYINAHCTEDLSLDELANEAGFSKYHFARLFKEITGTTCHNYLLGRRLLFAKTLLADF 245 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 + PI ++A++ F+S TF R FK Q TP+ +R+ Sbjct: 246 SLPITEVAMRSGFNSLATFNRIFKFQIGCTPSEFRK 281 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 79/139 (56%), Gaps = 7/139 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +R +L ++ HLD+ LS++ +AA A +S+ H QR F + G + AY++ R+ +++ L Sbjct: 15 MRRVLDHIDAHLDEDLSVEVLAAVAAFSRHHFQRQFSGLYGIGVAAYVQLARMKRASYRL 74 Query: 67 RLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF-GIRPPL-----R 119 + +L IAL ++ + F+RAF++ F Q+P+ +RR+P W + + PL + Sbjct: 75 AFRDQDGVLGIALDSGYEGPEAFSRAFRRLFDQSPSSFRRAPRWEPWHAAQSPLVQARRQ 134 Query: 120 LGEFTMPEHKFVTLEDTPL 138 FT + + V DTP+ Sbjct: 135 TMTFTDDDVRIVDFPDTPV 153 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 IIR + ++++ HLD P++L+ +A A +S +H R+F +TG + YIR L ++A Sbjct: 12 IIR-VQMFIQDHLDDPMTLEELAKVACFSPFHFHRIFTAMTGEPLKEYIRRLLLERAAHE 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 LR +++P++ +AL + + + FTRAF+ F P YR Sbjct: 71 LRYSSQPVVQVALNAGYQTHEAFTRAFRNMFGVPPRQYR 109 >UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=Q24TQ4_DESHY Length = 305 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 64/112 (57%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L + E HL + + + VA +A S +H QR+F + G ++G YIR RRL+ Sbjct: 15 MDWITGIQRSLDYTEAHLTEKIDYEMVAKQAYSSAFHFQRVFSILCGFSLGDYIRMRRLA 74 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF 112 ++A L T I+ IAL+Y +D+ ++F+RAF + TP RR +F Sbjct: 75 RAAEDLLCTDEKIIHIALKYGYDTPESFSRAFLRFHGITPTEARRGGTVKSF 126 >UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP62_CLOCL Length = 292 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 62/106 (58%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +++ + ++E ++ + ++ D +A A S +H QRMF +TG +G YIR RRL+ Sbjct: 1 MDWINSMQNAINYMEDNILEEINYDKIAQCAYSSTYHFQRMFSMLTGFTVGEYIRNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 +A L + I DIA++Y + + + FT+AF++ TP R S Sbjct: 61 LAAQELSFSKERITDIAIKYGYGTSEAFTKAFQRFHGITPTAARES 106 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 27/274 (9%) Query: 22 LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYR 81 LSLD +A A S++H R+F+ +TG G +R RL ++AVAL + I +IA Sbjct: 24 LSLDRLADVAAMSRFHWHRVFRALTGETCGQSVRRIRLHRAAVALAHSDASIEEIAATVG 83 Query: 82 FDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLRLGEFTMPEHKFVTLEDTPLIG 140 + S+ +F+RAF + P +R A G+ PPL L + VTL D P Sbjct: 84 YPSRHSFSRAFTAAYGDAPGAFR------AKGLHLPPLALRDPKELSMHNVTLRDEPARH 137 Query: 141 -VTQSYSCSLEQIS-DFRHEMRYQFWHDFLGNA----PTIPPVLYGLNETRPSQDKDDEQ 194 VT + +I F H L N+ P + PVL G+ P + +D+ Sbjct: 138 LVTVPHRGPYAEIGRAFEH-------FSALANSRNLWPQLGPVL-GVYLDAPGEMPEDQL 189 Query: 195 EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLT 254 + A A+ + DG P L GG+ + T++G G+ +++G +P T Sbjct: 190 RSY---AGAEYRGDGTPEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGGWLPQSGET 246 Query: 255 RRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 E Y A A P L E+++P+R Sbjct: 247 PADQPCYEIYLNDPRATA---PEELLTEIVLPLR 277 >UniRef50_O31456 Uncharacterized HTH-type transcriptional regulator ybfP n=5 Tax=Bacillaceae RepID=YBFP_BACSU Length = 295 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/98 (39%), Positives = 63/98 (64%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ + W+E HL + +S +++ + +SK+H R+F+ G ++ +YIR RRL+ +A AL Sbjct: 7 VQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQKEVGMSVASYIRLRRLANAAAAL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 T I+DIAL Y+F+SQ+ FTR FKK + P YR Sbjct: 67 LYTDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGAYR 104 >UniRef50_A6TGX0 Regulation of superoxide response regulon n=6 Tax=Klebsiella RepID=A6TGX0_KLEP7 Length = 122 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 1/103 (0%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q ++ DLL+W++ +LD+ L++D+++ +GYS WHL R+F+ + YIR +R+S Sbjct: 13 QQSVLSDLLLWIDNNLDKKLTVDDLSDISGYSPWHLFRLFRHYFDRSPMEYIRQQRMSLC 72 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L T I+DI + +D F R FKK A TP YR Sbjct: 73 CRLLLTTPGYRIVDICMMVGYDDLSAFNRTFKKYHALTPTQYR 115 >UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARB2_SEBTE Length = 285 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + L ++E +L+ + + +A S++++QR+F ++G +G YIR RRLS Sbjct: 1 MNWISALNNALEYIENNLENDVKIKKIAQICLCSEYNVQRVFSIISGVTLGEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-RSPEWSAF 112 K+AV +R T I+DIA +Y ++S F++AFK +P R RS E + Sbjct: 61 KAAVDIRETNMRIIDIAFKYNYESADAFSKAFKNFHGISPKDGRVRSNELKTY 113 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 58/98 (59%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ ++ +LE + +QPL+L VAAKA S +H R+FK VT + Y+R RL + A L Sbjct: 9 LKPVIRYLEQNFNQPLNLPEVAAKANISPYHFHRIFKAVTNETLAEYLRRLRLERIATDL 68 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 I ++AL+ F S Q+ +AFK++F TP+ R Sbjct: 69 FYKQVSITELALENGFSSSQSLAKAFKQRFGLTPSELR 106 >UniRef50_A6LWT0 Transcriptional regulator, AraC family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWT0_CLOB8 Length = 263 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 60/98 (61%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +++LL ++E H + +SLD++A G+SK++L R+F + G+ YI R++K+ L Sbjct: 163 MQNLLKYIEIHYHEKISLDSIAKDLGFSKFYLSRIFSNKIGYQFNDYINRLRINKAQKLL 222 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 T P+ IAL+ F+SQ+ F R FK+ A TP +R Sbjct: 223 SETDLPVTIIALECGFESQRNFNRIFKELTALTPTKFR 260 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 68/107 (63%), Gaps = 4/107 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++Q ++D ++E HLD+ L++ ++ +A +S++H QR++ +TG ++ +I+ RL Sbjct: 10 VEQINKVQD---YIENHLDESLTVKRLSQRANFSEYHFQRIYGSMTGESLYGFIKRIRLE 66 Query: 61 KSA-VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 K+A + L RPI+DIA+ F +Q +F +AFK ++ + YR++ Sbjct: 67 KAAHILLFDKDRPIIDIAMSVGFSNQTSFAKAFKSKYGVCSSSYRKT 113 >UniRef50_UPI0001789679 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789679 Length = 289 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 11/140 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ II LI +E +L+QPLS+ +VA SK++ R+F + G ++ YI +RRL+ Sbjct: 1 MNHHRIIEQALIHIEENLEQPLSVSSVALTFNMSKYYFHRLFSAMMGCSLNQYILSRRLN 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-----SPEWSAFGIR 115 + + + DIA Q F +Q +FTRAFK+ + P+ R SP ++ Sbjct: 61 AALSLIHNNNLSLTDIAYQLAFGTQASFTRAFKQHYGVAPSSLRAGFNKISPTPIPTVVK 120 Query: 116 PPLR------LGEFTMPEHK 129 P + + +FT+ E K Sbjct: 121 RPFKNMNGDVVTDFTLTEFK 140 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 1/104 (0%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + +L ++E HL++ LSL+ +AA A YS +H R+F+ V ++ YI +R+ K Sbjct: 10 DHIKRLNKVLQFVEDHLEEELSLEKIAAIACYSPFHFHRIFRSVVNESLNVYIVRKRIEK 69 Query: 62 SA-VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +A + +R I ++++ Y F+ +F+RAFKK + +P+ +R Sbjct: 70 AASILIRKPGISITELSVMYGFNGNTSFSRAFKKYYGMSPSDFR 113 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 130/281 (46%), Gaps = 16/281 (5%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L ++ +LD LSLD +A A S++H R+F+ + G + IR RL+++A+ L + Sbjct: 17 VLEYIYNNLDGDLSLDALADVACMSRFHWHRVFQSMRGETLATSIRRIRLNRAALDLIQS 76 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 +PI +IA QY + S Q+F+RAFK ++ P +R S +++A P L + ++ Sbjct: 77 KQPITEIAEQYGYPSAQSFSRAFKGEYGMAPGQFRES-KYAA----PTLETEKESIFSMH 131 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV--LYGLNETRPS 187 V +++ P +S + S F + + L + I + G+ PS Sbjct: 132 PVEIKEVP----ERSLQALFHRGSYFEMGVVFSKLAAMLSSRGVIRKCGPIVGIYYDDPS 187 Query: 188 QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTC 247 DE + Q+ A+ L P+++ GG + ++G G++ +YG Sbjct: 188 LVPLDELRSHVGAVVPQNFANTEGL--EPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVW 245 Query: 248 MPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +P + + D Y ++ P +L E+ +P++ Sbjct: 246 LPT---SGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA-R 71 ++ HLD L+++ + A +SK+H R F G + +++ RL +++ L T + Sbjct: 17 YIYKHLDDDLTVEALCDVACFSKYHFHRQFTHFMGVGVFKFVQILRLKRASYELVFTKEK 76 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI 114 I+DIA+ +FD ++F+RAFKK + Q+P+ +RR P+ G+ Sbjct: 77 RIIDIAMSAKFDHPESFSRAFKKAYLQSPSEFRRHPDLEKLGL 119 >UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptococcus RepID=B9DS09_STRU0 Length = 307 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 IR L+ ++ H L++D ++ GYSK H +FK TG + ++ RLSK+ L Sbjct: 191 IRQLIDYINNHYSDNLTIDFLSQFIGYSKTHFMTVFKQHTGTSCTEFVIQVRLSKACELL 250 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR---SPEWSAFGIRPP 117 + RPIL+IA + F++ F R FK+ + TP+ YR+ P+ S I PP Sbjct: 251 IHSTRPILEIANEIGFNNLSNFNRQFKRYYNLTPSQYRKKYTKPKESRTLINPP 304 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 83/145 (57%), Gaps = 6/145 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ + ++E HL + ++++ +A + S +H QR F +T +I Y+R RRL+ +A L Sbjct: 7 IQKAINFMEDHLLENITIEQIAQEVNSSVFHFQRTFAILTDMSIADYLRRRRLTLAAQEL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS----PEWSAFGIRPPLRLGE 122 T + I+D+A +Y +++ + FT+AF+KQ TP+ R+ ++ I+ L+ E Sbjct: 67 MDTDQKIIDLAYKYGYETPEAFTKAFRKQHYVTPSEARKRQGPLKSYNRLVIQVSLKGAE 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSC 147 ++K V + ++GV ++Y+C Sbjct: 127 PM--KYKIVEKDKFQVVGVKRTYNC 149 >UniRef50_Q63B02 Transcriptional regulator, AraC family n=72 Tax=Bacillus RepID=Q63B02_BACCZ Length = 367 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 10/133 (7%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ ++ W+E +L + SLD ++ GYS ++ F VTG +I Y+ RRL S L Sbjct: 8 IQQMIDWIEVNLKKEFSLDELSRYMGYSPYYCSFKFHQVTGFSIRRYVLLRRLYLSIEDL 67 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-----G 121 + R I+DIAL Y + SQ+ ++RAFK F P R + + I+ ++L G Sbjct: 68 K-NGRKIIDIALDYNYSSQEAYSRAFKNVFGMNP----REFQLNQLPIQSFVKLNINKEG 122 Query: 122 EFTMPEHKFVTLE 134 EF M + + +E Sbjct: 123 EFNMNISRKIEVE 135 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 58/93 (62%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 +E LD+ L+L ++A A +S +H R+F +TG +GAY+R RL ++A L +P+ Sbjct: 20 MEARLDEELALSDIAGAAHFSPYHFHRIFVGMTGETVGAYLRRLRLERAAQRLCYGDQPV 79 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 +AL+ F+S + F RAF+ + +P+ +R++ Sbjct: 80 TTVALEAGFESPEAFARAFRAVYGVSPSAWRQA 112 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL-RLTARP 72 ++ ++ SL ++ SK+H QR+FK + G + YI RL +++ L Sbjct: 17 IDSEPNEKYSLQELSDVVRLSKYHFQRVFKSMVGVSPHRYILLSRLRRASFELVYFKELK 76 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG----IRPPLRLGEFTM 125 I+DIAL F+S + FTRAF + F QTP +R+SP+WS++G IR P+R ++ + Sbjct: 77 IIDIALLAGFESPEAFTRAFVRLFDQTPTEFRKSPQWSSWGHRFNIRVPVREKKYEI 133 >UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=A9KR18_CLOPH Length = 301 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 61/106 (57%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + + VA KA S ++ QRMF +T I YIR RRL+ Sbjct: 1 MDMLTKMNAALDYIENNLTEDIDFTIVAQKACCSSYNFQRMFSFITDVPIAEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 ++A+ L+ T ++D+AL+Y +DS +F+RAF TP ++S Sbjct: 61 QAAIELQNTNAKVIDVALKYGYDSTVSFSRAFSNIHGITPNEAKQS 106 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 128/292 (43%), Gaps = 47/292 (16%) Query: 1 MDQAGI--IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 M Q I I D+L ++ + + LS +A A YS+ H R+FK V G +I YIR R Sbjct: 6 MSQQHISRINDVLYFIHQDISRELSAKALADVAAYSEQHFHRVFKQVVGESIHQYIRRTR 65 Query: 59 LSKSAVALRLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYR------------R 105 + +A L R +LDIA + F S +F+RAFK F+ P +R + Sbjct: 66 MEYAANQLMFDTRSSVLDIANKCGFSSVSSFSRAFKATFSMAPGEWRYHDLHISDKPYLK 125 Query: 106 SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFW 164 PE +A G R+ + T+PE K + + V Y+ S++ + + W Sbjct: 126 DPEVAA-GYH---RVAKRTLPEPKITEVPERMAAYVRHVGYNRSIKNA-----WLILKAW 176 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 + G + V +GL+ + P+ + D+ Y +A D+ Y + +++ GG + Sbjct: 177 ANSEGRSFE---VQFGLHHSNPAWVELDKCR--YVACIAIDKPLKYRGVVNQMVIPGGLH 231 Query: 225 VMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP 276 +F G VYG +P +++ +E++ PA K P Sbjct: 232 AVFRLHG-----------VYGELLPQISMV------LEKWLPASGFKLRSTP 266 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +L +++ HLDQPL ++A A +S++H R+F G +G+Y + RRL K+A L Sbjct: 18 INRVLNYIDAHLDQPLDGAHLADIANFSRFHFHRIFAAWMGETLGSYAQRRRLEKAAFRL 77 Query: 67 RLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 ++ +L+ AL F S + F RAFK +F TP+ +R + Sbjct: 78 SCGSKETVLETALATGFQSGEAFARAFKLKFGCTPSAWRST 118 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ L ++E +LD+ LS+++++ + G S+ HL R FK G ++ I RL ++A L Sbjct: 5 LKAALNYIESNLDKSLSIESISTQVGMSQSHLHRKFKAELGLSLYELIILLRLKRAAYQL 64 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPLRLGEFT 124 ++DIA + + S Q FTRAF+K F Q P+ +R+ W + + P L L + Sbjct: 65 AYRQTKVIDIAFEAHYKSHQAFTRAFQKVFKQAPSAFRKRANWFFWQQKYDPFLALRKIN 124 Query: 125 MPEHKFVTLE 134 M ++ +E Sbjct: 125 MNDNTCFNVE 134 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 1/102 (0%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR-PILD 75 HLD+PLSL+ ++A A S +H R F TG + YI+ RL ++ L R ++D Sbjct: 24 HLDEPLSLEALSAIAHSSPYHFHRQFSAYTGIPLYRYIQWLRLRRACWRLAFNPRDKVID 83 Query: 76 IALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 IAL F + ++F+RAF+ F Q+P +R+ P+W+ + R P Sbjct: 84 IALDAGFQNAESFSRAFRTAFDQSPTQFRQQPDWAEWHRRVP 125 >UniRef50_A6FWZ8 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FWZ8_9DELT Length = 318 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 50/84 (59%) Query: 22 LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYR 81 ++LD++A AG SK+H R F V G GAY+R RL +A LR T PIL++AL Sbjct: 231 VTLDDLAQVAGLSKYHFLRQFSQVVGMTPGAYLRTLRLCHAARKLRTTDLPILEVALSVG 290 Query: 82 FDSQQTFTRAFKKQFAQTPALYRR 105 F +F+RAF + TP+ Y++ Sbjct: 291 FADHPSFSRAFARHMGMTPSEYQK 314 >UniRef50_A5W8X4 Transcriptional regulator, AraC family n=13 Tax=Pseudomonas RepID=A5W8X4_PSEP1 Length = 291 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%) Query: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 R L+ +LE HLDQP++L+ +A + S++H RMF+ G Y+ ARRL ++ LR Sbjct: 190 RQLVDYLEAHLDQPITLEELALRCNLSEYHFARMFRASFGLPPHQYLLARRLHRACQLLR 249 Query: 68 LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L P+ +IAL F S F+ F++ TP YR++ Sbjct: 250 LGVLPLGEIALLCGFASASHFSNRFRQALGATPGEYRKA 288 >UniRef50_UPI0001C3596C AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3596C Length = 304 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 10/130 (7%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 + +++ H +PLS+ ++ + GYS H RMF+ G + Y++ +RL +A +R Sbjct: 2 ECALYIRLHAKEPLSVQGLSNRFGYSACHFSRMFRAEMGVTLMDYVKQQRLFGAAREIR- 60 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 R ILD AL Y +++ FTRAF+ QF +PAL R AF + G++ E+ Sbjct: 61 EGRKILDAALDYGYETHSGFTRAFRAQFGYSPALLR------AFRVGEAFEKGDW---EN 111 Query: 129 KFVTLEDTPL 138 + L +TP+ Sbjct: 112 MGIYLRNTPV 121 >UniRef50_C7G9P1 AraC-type sugar metabolism regulator n=2 Tax=Lachnospiraceae RepID=C7G9P1_9FIRM Length = 291 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D +G+ +L ++E HLD+ LSLD+++ SK+H+ +FKD G ++ YI +RLS Sbjct: 182 DASGLYDGILQYIESHLDEDLSLDSLSKAFFVSKYHISHIFKDNFGISVHQYITKKRLSM 241 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 A+ L+ I I L Y F +F RAFKK++ +P Y+ Sbjct: 242 CRDAI-LSNENITKIYLMYGFKDYTSFFRAFKKEYGISPKEYK 283 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 L ++E HLD+ L + +A AG SK+H R F+ G + ++ RL ++A L + Sbjct: 19 LAFIEAHLDEALPVARLAEVAGLSKFHFHRQFRAHVGVPVARFVARLRLRRAAQQLAFSP 78 Query: 71 R-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP--- 126 +LD+AL FDS + F RAF+ Q+P +RR+P+W P +F +P Sbjct: 79 ELRVLDVALSAGFDSPEAFARAFRAVQGQSPTAFRRAPDW-------PRWHAQFELPRAL 131 Query: 127 EHKFVTLED--TPLI 139 H + D TP++ Sbjct: 132 HHSHAAMSDAATPIL 146 >UniRef50_C0BW87 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0BW87_9CLOT Length = 333 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 63/103 (61%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I+ ++ ++ + + L+L ++ + GYS+++ R FK++ G Y+R R+L+ + Sbjct: 11 IVDEIDSCIKNYNGEDLTLRFLSRRLGYSEFYTTRKFKEILGIQFRDYLRLRKLAFALKE 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 +R + + ILDIA Y F S + FTRAFK + TP+ YR++P+ Sbjct: 71 IRDSEKSILDIAFDYGFSSHEAFTRAFKGTYGVTPSEYRKNPK 113 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + L+ + +L PL+L+ +AA + +S +HL R+F V G + A+IR R+ ++AV L Sbjct: 14 VNRLIDHIVNNLSGPLTLEEMAAVSSFSPFHLHRIFSTVMGETLAAFIRRVRIERAAVLL 73 Query: 67 RLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP 116 R + DIA F S Q RAF + P +YRR G+ P Sbjct: 74 LWNPTRSVTDIAFACGFSSSQNLARAFTRHMGMPPGVYRRCRREEGCGLTP 124 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 38/257 (14%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I+++++++ GHL + L+ D +++ +G SK+H +R+F+ TG IG+YI+ R+ A Sbjct: 108 MIQNIIVYINGHLTEVLNTDTLSSMSGLSKFHFRRVFRTATGENIGSYIQRLRMEHVAHL 167 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L T + I Q + ++ + +AFKK F + + YR G P + Sbjct: 168 LISTDYTLKQIIEQTSYQTKYSIAKAFKKHFGISTSQYREKHR--PNGENPATNIK---- 221 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ-FWHDFLGNAPTIPPVLYGLNET 184 PE K ++ I V ++Y +++++Y+ W+ L +A E Sbjct: 222 PEIKVISPIKIFCIEVGEAY----------KNKLKYRLLWNKLLHHAEQY--------EA 263 Query: 185 RPSQDK------DD------EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 P DK DD E+ FY +D + G + + GG Y +F + G Sbjct: 264 DPRYDKFISLSMDDPSITPTEKCRFYLGITLRDDTKARPVPG-IMQIPGGRYAVFRHTGS 322 Query: 233 GTGVQEFILTVYGTCMP 249 + + + ++Y P Sbjct: 323 YSSLHKVYRSIYEEWFP 339 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 58/105 (55%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+Q I+ + ++E L + L+L VA YS++H R F G + +YIR RRLS Sbjct: 1 MNQINTIQKSIDYIEERLGEGLTLAEVAKAMFYSEYHFHRTFLFFVGETMTSYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L + I+DIAL+ F S + FTRAF+K + P RR Sbjct: 61 LAAELLAHSDLKIVDIALRCGFGSHEAFTRAFRKMYGILPTECRR 105 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 1/104 (0%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M +I++ L +++ H+ + ++++ +A AG+S +H ++F G + YI R+L Sbjct: 1 MHYLNLIQNTLDYIDFHILEKITVEELAKIAGFSTYHFYKVFNSFVGMPVMEYITRRKLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + L + +LDIAL Y F++ FT+AFKK F P+ YR Sbjct: 61 YALYDLS-NGKKVLDIALTYGFETHAGFTKAFKKSFGYPPSFYR 103 >UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Z6_9FIRM Length = 285 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 54/99 (54%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ +L WL H +PL + + A +S H R F+ +TG + A++ RL+ +A AL Sbjct: 186 LKTVLQWLSAHYAEPLRVADAAGVCSFSASHFMRWFRQMTGQSFIAFLNEYRLNTAAEAL 245 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 R T +L IA + F++ F RAFK F TP YR+ Sbjct: 246 RTTDETVLTIASRCGFENLSYFNRAFKAHFGMTPRDYRK 284 >UniRef50_C1FNH9 Transcriptional regulator, AraC family n=11 Tax=Clostridiaceae RepID=C1FNH9_CLOBJ Length = 129 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 56/99 (56%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I +++ W+E ++ + +L ++ GYS ++ F + G YI RRLS +A+ + Sbjct: 6 IENMVNWIEDNIMRNPTLTEMSNYVGYSPFYCSSKFHENIGITFKQYISKRRLSLAAIKV 65 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 + T LDIAL+Y F SQ+ FTRAF + TP YR+ Sbjct: 66 KDTKVRFLDIALKYGFSSQEAFTRAFVSNYGCTPNEYRK 104 >UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=Clostridiales RepID=A9KR86_CLOPH Length = 298 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I + ++E H+ + ++++ VA++ GYS +H R+F G ++ YIR RRLS +A L Sbjct: 11 IETCVEYIEEHIKENITMEEVASQIGYSLYHFSRVFSLCKGISVMEYIRNRRLSLAATQL 70 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 R I+DIA Y F++ F +F+ F +P + + Sbjct: 71 -FQGRKIIDIAFDYEFETPSGFANSFRNAFGYSPTQFMK 108 >UniRef50_B8K6M7 Transcriptional regulator, AraC/XylS family n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K6M7_VIBPA Length = 310 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q+ I+ +L ++E HL+ P+SLD +AA+ S +LQR+FKD G + +YIR RRL + Sbjct: 206 QSERIKRILHFIETHLEAPMSLDVLAARFSMSTSNLQRVFKDELGVTVKSYIRQRRLHVA 265 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 L + + A + ++ FT AFKK+F PA Sbjct: 266 KTGLERGVLTVTEAAYEAGYNHPANFTNAFKKEFGVPPA 304 >UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Firmicutes RepID=C9AWD9_ENTCA Length = 300 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ + ++E +L +PL ++ +A A S ++ QR+F + ++ YI+ RRL++ A+ L Sbjct: 7 IQKSIDYIEDNLTEPLEIETLAQVASLSVFYYQRLFTRLVKISVREYIKLRRLARGALLL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + + ++D+A + F S F+R FK + +P+LY++ P +P L LG Sbjct: 67 KNQKKRVIDVAFEVGFSSHAVFSRTFKTVYRISPSLYQKKPIGLQNFDKPDLSLG----- 121 Query: 127 EHKFVTLEDTPLI 139 VT E PLI Sbjct: 122 --YIVTEEGIPLI 132 >UniRef50_D0LEJ4 Helix-turn-helix-domain containing protein AraC type n=5 Tax=Actinobacteria (class) RepID=D0LEJ4_GORB4 Length = 164 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 1/108 (0%) Query: 20 QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQ 79 +P+++D++AA AG S+ H R F G + AY++ RRL ++A LR T R + DI + Sbjct: 23 EPVTVDHMAAAAGLSRAHFTRAFTTAFGESPHAYLQTRRLERAAAMLRSTDRSVADICMA 82 Query: 80 YRFDSQQTFTRAFKKQFAQTPALYRRS-PEWSAFGIRPPLRLGEFTMP 126 S +FT +F + F +TP YR S P + F P L ++ P Sbjct: 83 VGLSSVGSFTTSFTRAFGRTPTAYRASFPAAATFAHVPACVLRVYSRP 130 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 59/105 (56%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + L ++E LD+ + +A A S++H RMF ++G ++ YIR RRL+ Sbjct: 1 MDWLERMNNALEYIENSLDEDIDYKKIAKAASCSEFHFSRMFSSISGVSLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A ++ I+D+A++Y + S F+RAFKK TP+ R Sbjct: 61 LAAFEIQKGDIRIIDVAIKYGYVSSDAFSRAFKKMHGITPSNARN 105 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 15/249 (6%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L +++ HL+ LS++ ++ A +S +H R F G + Y++ RL ++A L + Sbjct: 17 VLAYIDSHLEGDLSVNALSRIANFSAFHFHRQFTAYMGVPVSRYVQLMRLRRAAHQLVAS 76 Query: 70 -ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPLRLGEFTMP 126 A PIL+ A F+S + F RAFK+ F P+++ ++P W A+ P R TM Sbjct: 77 PAMPILEAAFGAGFESPEAFARAFKRAFGMAPSVFAKAPNWQAWSAVFNVPQRSRSITM- 135 Query: 127 EHKFVTLEDTPLIGVTQSYSCSL--EQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 + + V +T + + L E ++ FR W G +P +G+ Sbjct: 136 QIRIVNFAETHVAALEHQGPPGLVSESVARFRQ------WRMHSGQSPVASSRTFGIPYD 189 Query: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTG-HPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 P D + D+A G H ++ G + + G + E I + Sbjct: 190 NP--DTTPAHAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPL 247 Query: 244 YGTCMPMLN 252 Y +P N Sbjct: 248 YRDWLPSSN 256 >UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVM9_HALO1 Length = 301 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 53/95 (55%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 LL L G D+ +SL +A + G S HLQR F + G + Y R +L +AV L T Sbjct: 11 LLAQLSGERDKRVSLARLAEQTGLSPSHLQRTFARLAGESPKQYARRMQLECAAVLLLST 70 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 ILDIAL FDS + FTRAF K F ++P +R Sbjct: 71 DDSILDIALASGFDSHEGFTRAFAKHFTRSPREFR 105 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 58/101 (57%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E HL + + D++A A YS +H QR F +TG + Y+R RRLS Sbjct: 1 MDWVRSLNYAIDYIEVHLSENIVCDDIAQSAFYSSFHFQRTFSLLTGMTVSEYVRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPA 101 +A L ++D+AL+Y +D+ ++F +AF++ P+ Sbjct: 61 LAAQELLNYDSKVIDVALKYGYDTPESFAKAFRRFHGVLPS 101 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 67/109 (61%), Gaps = 5/109 (4%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL- 68 +L ++ HLD L L+ +++ A +SK+H R FK G ++ Y++ RL +++ L Sbjct: 18 VLDHIDRHLDGDLDLEAMSSVAAFSKFHFHRQFKATFGVSLHRYVQLARLRRASKRLADG 77 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW----SAFG 113 + + DIAL +++ F RAF+++FAQ+P+ +R+SP+W +AFG Sbjct: 78 QGQSVTDIALDAGYETPDAFARAFRQRFAQSPSRFRKSPDWEPWLAAFG 126 >UniRef50_C6MNU8 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. M18 RepID=C6MNU8_9DELT Length = 262 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%) Query: 1 MDQAGI-----IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIR 55 + +AG+ IRD+ W++ + +Q ++LD +A + G S+ L R F+ G +I +Y+ Sbjct: 141 LGEAGVRHSDKIRDICAWIDANSNQSVNLDALALRFGMSRSLLTREFRKYAGTSIVSYVN 200 Query: 56 ARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +RRL + AL + IL+++L + F S F + FK + TPA +R Sbjct: 201 SRRLQNAGTALMSPGKSILEVSLDFGFVSLANFYKQFKSLYGMTPAEFR 249 >UniRef50_A5Z7H2 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7H2_9FIRM Length = 292 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 ++ +L ++E HL++ L++ +A AGYS++H RMFK T + Y+ RRL ++ Sbjct: 2 VMNHVLKYIEEHLEESLNIKRLAEIAGYSEYHFIRMFKRYTNETVMEYVCRRRLIRACED 61 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + L R I+D+A++Y + S F+++F ++F P+L + Sbjct: 62 ILLGMR-IIDVAIKYGWQSHSAFSKSFNREFGFPPSLLK 99 >UniRef50_C2LSM7 Transcriptional regulator n=5 Tax=Streptococcus RepID=C2LSM7_STRSL Length = 313 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 58/100 (58%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 IR+++ ++ H + L+++ ++ GYSK H +FK TG + +I RL+ + L Sbjct: 204 IREIIDYINQHYAENLTIEKLSELMGYSKTHFMTIFKQHTGTSCTEFIIQARLNAACEEL 263 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 R + +P+L+IA F++ F R FK + QTP+ YR++ Sbjct: 264 RNSVKPVLEIATTVGFNNLSNFNRQFKHYYDQTPSQYRKT 303 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 14/277 (5%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 L ++E H D PL+L ++AA AG S +HL R+F+ TG ++ Y+R RRLS +A L A Sbjct: 18 LWYIETHADSPLALADIAAAAGLSPFHLSRLFQARTGTSVVRYLRGRRLSAAAQRLAEGA 77 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKF 130 IL +AL + + FTRAF +QF QTP R + +R+ + + Sbjct: 78 GDILPVALSAGYTTHAAFTRAFCEQFGQTPERVREH-GIDGLALVQAIRVDDAPAACTEA 136 Query: 131 VTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDK 190 L DTP Q + D + Q W P P+ +G+ + Sbjct: 137 PRLLDTPAF---QVAGIGMRHTRDSGGAIPGQ-WAQLNREWPAPAPISFGV-----CCNS 187 Query: 191 DDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM 250 DDE Y AL V + Y++ + G + ++ + +P Sbjct: 188 DDEGGFDYIAALPASALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLPG 247 Query: 251 LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 L+ D+ERY D + + N E+ +P+ Sbjct: 248 TGLSLADAPDLERY----DTRFDEHTGNGGVEIWLPV 280 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 63/98 (64%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 ++L++++ +LD LS + +A A +S H R+FK + G ++ ++R RL +++ L Sbjct: 14 EVLLYIQRNLDGDLSPETLAELACFSVAHFHRIFKGMVGESLKEHVRRLRLERASYRLCY 73 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 + +++IAL F+S +TF+RAFKK+F +P+ +R + Sbjct: 74 SNTTVMEIALDAGFESPETFSRAFKKRFLVSPSDFRNN 111 >UniRef50_A8RSA7 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A8RSA7_9CLOT Length = 296 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 4/105 (3%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++ HL++ LSLD++++ SK+H+ +FKD G + YI +RL S A+ L+ +P Sbjct: 193 YINRHLEEDLSLDSLSSFFYVSKYHISHIFKDNMGIPLHQYILKKRLHASKNAI-LSDQP 251 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYR---RSPEWSAFGI 114 I + LQY F +F RAFKK++ +P YR R PE + I Sbjct: 252 ISHVYLQYGFKDYTSFFRAFKKEYGVSPKEYREQHRLPEQQDYTI 296 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 134/303 (44%), Gaps = 35/303 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + L ++ VA A S +H QRM+ +TG I Y+R RRL+ Sbjct: 1 MDWLDSMNKAVEYIEDNITEKLDIEKVAKIALSSPFHFQRMYHVITGVTIVEYVRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A + ++ I+++A +Y +++ + FT+AF++ + +P+ R PE + P L Sbjct: 61 LAAQDI-ISGEKIINVAYKYGYETPEAFTKAFRRMYGMSPSA-AREPE-ANLKAYPKLSF 117 Query: 121 -----GEFTMPEHKFVTLEDTPLIG----VTQSYSCSLEQISDFRHEMRYQFWHDFL--G 169 G+ M +K V E ++G +T + EQ+ +FW++ + G Sbjct: 118 HISIKGDKDM-NYKIVEKESFRVVGKQTRITMVDGENFEQVP--------EFWNNCMKDG 168 Query: 170 NAPTIPPVLYGLNETRPSQD--KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 + I + L +D KD+ + + GYV P + +F Sbjct: 169 SYNWICSKVGKLGVLGICKDFGKDEFNYMIGVEEIKDSIPKGYVSATIP----AATWAIF 224 Query: 228 TYEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 G L +Q+ ++ +P ++E YP D + D +CE+ IP Sbjct: 225 ESSGALPDAIQDLTRRIFTEWLPSTGYEHACAPELE-IYPEGDIYSSD----YKCEIWIP 279 Query: 287 IRR 289 I++ Sbjct: 280 IKK 282 >UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria RepID=A6M032_CLOB8 Length = 285 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/292 (22%), Positives = 133/292 (45%), Gaps = 23/292 (7%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I + + ++E ++ + +++ N+A K S ++ Q+ F + G +G YIR RRL+ + L Sbjct: 7 IGEAISYIEENITEEITIKNIAEKTFMSPFYFQKGFAMLCGFTVGEYIRQRRLTLAGSDL 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-----G 121 T I+DIAL+Y + S +FT+AF + TP R+ + + PL++ G Sbjct: 67 VSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRK--DGAMIKSFAPLKIKFLLEG 124 Query: 122 EFTMPEHKFVTLEDTPLIGVTQ--SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + M ++K V + ++GV++ Y + +I F E H G + +Y Sbjct: 125 GYIM-DYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTE------HYEAGKGKFVCG-MY 176 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTGVQE 238 G++ + E + + + +G+V ++ + +F +G + +Q+ Sbjct: 177 GISIDESMGSDEFEYLIADNYNPSIEIPNGFVTK----IIPKHTWAVFACKGAMPKSLQD 232 Query: 239 FILTVYGTCMPML-NLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 ++ +P + G +IE Y D G++ N E+ IP+++ Sbjct: 233 MNRKIFSEWLPNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPVKK 284 >UniRef50_UPI000178A094 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A094 Length = 289 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + +L W+E + P LD++A S +HL +FK+ TG +I YI ARR+ +S L Sbjct: 186 VEHILTWIETNYTIPFRLDDMAKSLHLSPYHLSHLFKEATGISITEYIAARRIHQSIQLL 245 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA 111 T +PI IA + + F + FK Q TP YR+ +W++ Sbjct: 246 ATTKKPISLIAEEIGLTNSSYFCKLFKSQMGITPHQYRK--KWTS 288 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 31/292 (10%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + + +++ +L L + +A S +H +++F++VTG IG YI+ RL A L Sbjct: 108 VNGVRTYIDQNLFHELDPEQLAEMVHLSFFHFRKVFRNVTGENIGTYIQRLRLEYIAHLL 167 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 T + I +I +Q + ++ + +AFKK F + + YR + P +MP Sbjct: 168 IATGQSIEEIGMQTNYQTKFSLAKAFKKHFGISMSAYREKYKSVNAKQEPD------SMP 221 Query: 127 EHKF--VTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 E K + I V ++ + ++ + Y+ H L N P G Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVH--LQNGP-------GNRFV 272 Query: 185 RPSQDK----DDEQEVFYTTALAQDQADGYVLTGHPVM--LQGGEYVMFTYEGLGTGVQE 238 SQD EQ FY L + +A+ G ++ + GG Y +F Y+G + + E Sbjct: 273 SISQDNPWVTPMEQRRFYIGVLVEGRANS---EGKLLLREIPGGMYAVFRYKGSYSDLPE 329 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI-NLRCELLIPIRR 289 F T+Y P +++ E Y A D + P+ L E+ IPI + Sbjct: 330 FYKTIYNQWFPYSMYHQKRPLTFEVYLNAPD----ETPVEELLTEIYIPIDK 377 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 53/97 (54%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 L +LE H + L +A AG S WH R+++DV G + ++ RL ++A + T Sbjct: 14 LHYLENHYTDSIDLQRIADAAGLSPWHWHRLYRDVMGETLHTTVKWMRLHRAAWLISYTD 73 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 +P DIA + +++ Q+F R+F+ + +P YR P Sbjct: 74 KPFADIARECGYNNAQSFARSFRDAYGLSPQQYRERP 110 >UniRef50_Q6LLD3 Hypothetical bacterial regulatory helix-turn-helix protein n=1 Tax=Photobacterium profundum RepID=Q6LLD3_PHOPR Length = 155 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 1/104 (0%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I + ++ HLD L++++++ A +SK+H R F G + +I+ RL +++ L Sbjct: 11 INKVCDYIYAHLDDELTVEDLSKVAHFSKYHFHRQFTHYMGIGVFKFIQQLRLKRASYQL 70 Query: 67 RLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 I+DIAL F+ ++F+RAFKK FAQ+P+ +R W Sbjct: 71 FFHRDTRIIDIALDANFEYPESFSRAFKKVFAQSPSEFRHQSNW 114 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/292 (20%), Positives = 131/292 (44%), Gaps = 29/292 (9%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I ++ ++ HL + L+L+ +AA+ S +H R+FK + AYI +R+ ++ + Sbjct: 12 LINQVIDYIHTHLHKALTLEMLAAEMHMSVYHFHRLFKSHLQETLSAYITRQRMERAVMY 71 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT- 124 L+ + +++ + +D+ Q+F++AFK+ F +P AFG E T Sbjct: 72 LQTRDLSLQELSEKMGYDTAQSFSKAFKRYFGVSPV---------AFGNTLTFNTPETTP 122 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF-WHDFLG-----NAPTIPPVL 178 + + F+ L++ ++ ++ Y + I + + Y+ W G + Sbjct: 123 IEDIAFIGLDEPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKATRW 182 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQD-QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 +G++ P+ K + + ++AQ + G + T + ++ G+Y ++TY+G +G+ Sbjct: 183 FGISFDDPTITKKKQCRFYACASVAQRIKPSGAIGT---LTIESGKYAVYTYKGSYSGLL 239 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y +R KG+ E D P ++ IPI++ Sbjct: 240 RAYTYIY---------SREKGRLRNALSFEEYVTWSDNPAKQITKIYIPIQK 282 >UniRef50_UPI0001C3658F AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3658F Length = 293 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 56/105 (53%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 D+ ++ H +PL L+++A+ G+SK+H R+FK+ G Y+ RL+ + L Sbjct: 187 DISYYINLHCTEPLRLEDIASYTGFSKFHFCRLFKEFVGCTFHDYVTGCRLAHAQSLLAS 246 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG 113 A I + ALQ F S TF R FK++ TP YR+ S+ G Sbjct: 247 AATTITEAALQSGFTSLATFNRIFKEKKRCTPTEYRKLLRSSSAG 291 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 35/285 (12%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDI 76 HLD+PL +D +A A S +H R+++ + G + +R RL ++A L + PI++I Sbjct: 50 HLDEPLDIDRLAEIACLSPYHWHRIYQAMYGETVATTVRRLRLHRAAGYLANGSMPIVEI 109 Query: 77 ALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDT 136 A + + S Q+F+R F+ F PA YR+ S F RP L G+ M + V Sbjct: 110 AERSGYSSLQSFSRTFRAVFGVPPAQYRKQGTHSRF--RPALS-GDDQMTMREVVIRHVE 166 Query: 137 PLIGVTQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQE 195 P+ ++ + QI F + H+ L + V Y DD Sbjct: 167 PIEVLSVDHVGPYMQIGKAFDALFGWLAKHNLLAGQMRMVGVYY-----------DDPGV 215 Query: 196 VFYTTALAQDQADGYVLTGHPVM-------------LQGGEYVMFTYEGLGTGVQEFILT 242 V A ++ ++ VL HPV ++GGEY + + G + ++ Sbjct: 216 V----AESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEW 271 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +YGT L + R+ D + ++ P +L E+ +P+ Sbjct: 272 LYGTW---LVQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPL 313 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 36/291 (12%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E ++ + + L+ V+ A S +H QRMF + + YIR RR+S +AV L+ Sbjct: 19 YIEKNIRETIDLEEVSKIACCSTYHFQRMFAYIADIPLSEYIRRRRMSLAAVDLQSGNEK 78 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-----GEFTMPE 127 ++DI+L+Y +DS F RAFK P+ R E + PP+ G+ M Sbjct: 79 VIDISLKYGYDSPTAFNRAFKSVHGIAPS--RAKEEGTILKAFPPISFKITIRGDIEM-N 135 Query: 128 HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT---------IPPVL 178 ++ + ++G+++ +E+ E + W N IP L Sbjct: 136 YRIEKKDSFRIVGISEPLETEMEK----NFETVPKMWGTAAMNGTIPRLAAMMDGIPMGL 191 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 G++ S + D + A +Q +G P L + +F+ +G +QE Sbjct: 192 LGVS----SCNNLDNWRYYIAVASSQPIENGLEEYIVPSSL----WAIFSGKGTAKSMQE 243 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + +P DIE Y A+ P + E+ IP+ + Sbjct: 244 LEKRIITEWLPTSGYEYGNAPDIEVYLKAD-------PEDTEYEVWIPVLK 287 >UniRef50_Q2RX05 Transcriptional regulator, AraC family n=2 Tax=Rhodospirillales RepID=Q2RX05_RHORT Length = 304 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 57/100 (57%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 ++ L ++E +L++ LS+D++AA A S +H R FK G AY+++RR+ ++ Sbjct: 194 VVARLRAFIEANLERALSIDDLAAVADLSPFHFARAFKATLGEPPHAYVQSRRIERAKTL 253 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 LR P+ +IAL F SQ FT F++ QTP Y R Sbjct: 254 LRADRLPLAEIALLCGFASQSHFTARFRQATGQTPGRYAR 293 >UniRef50_A3SRS4 Transcriptional regulator, AraC family protein n=2 Tax=Proteobacteria RepID=A3SRS4_9RHOB Length = 281 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 W+ HLD P+ L ++A AG S++H RMF+ G + ++ RR+ + LR A Sbjct: 183 WIAAHLDGPIRLADLAEAAGLSEYHFHRMFRASRGTSPHKWVTMRRVEAAKARLR-GAGS 241 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 I ++A F Q TR FK + + TPALYRRS Sbjct: 242 IAEVASACGFACQSHLTRVFKAETSVTPALYRRS 275 >UniRef50_C0FW59 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0FW59_9FIRM Length = 292 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 60/104 (57%), Gaps = 1/104 (0%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 ++ + ++++ +++ HLD+ LSL+ +A + SK+H+ +FK+ G ++ YI +R+ Sbjct: 182 EEQNLYQNIIYYIDDHLDEELSLEQLAGQFFVSKYHIAHIFKEQMGLSVHQYILKKRMQA 241 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 S A+ L I D+ + F +F RAFKK+F +P Y+ Sbjct: 242 SKAAI-LGETSITDVYTMFGFKDYSSFYRAFKKEFGVSPKEYKE 284 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 119/288 (41%), Gaps = 18/288 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ +++ +L + + L +A A S +H R+FK V +G Y++ RL ++A L Sbjct: 54 VNQVVDYIQSNLQEKIELTTLANLANISHFHFHRIFKSVMNENVGEYVQRVRLERAAFKL 113 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + T + +IA Q + +Q ++AFKK F +P+ YR P + P+R E + Sbjct: 114 QTTNLNLTEIAEQVGYQTQFALSKAFKKYFNISPSTYRSMPT----DLTIPVRREECGIS 169 Query: 127 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL-----GNAPTIPPVLYGL 181 + + P+ V + + I F + W L G P + Sbjct: 170 DIRQDIRVIEPVEVVYIQVANPYKYIDAFT-----KAWDRLLKYVRKGGIPDGETEYFTF 224 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 + P+ EQ+ + D + + G ++GGEY +FT G + + Sbjct: 225 SRDVPTIITSPEQQRIFVCVNNSDHLEPSGIIGVQT-IEGGEYAVFTMYGAYRQLPDVYT 283 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y + + R E+Y + D D+ L E+ IP+ + Sbjct: 284 YIYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDK---LMTEIYIPVSK 328 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL-SKSAVALRLTAR 71 ++E HL +PLSLD ++ AG+SK+H R+FK + + Y+ +L + +A + T Sbjct: 20 YIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLENATAFLIHRTDM 79 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 + DIA + F F+RAFK + +P YR + + + P ++ ++ Sbjct: 80 TVTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNN---YSKNCKEPYKISQYN 129 >UniRef50_C8ZY41 AraC family transcriptional regulator n=1 Tax=Enterococcus gallinarum EG2 RepID=C8ZY41_ENTGA Length = 292 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 60/104 (57%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L+++E +L LS +A KAG S++H QR+FK G + Y++ RR++ Sbjct: 3 MDYTKDIQLALLYIENNLTGDLSSKEIAKKAGMSEFHFQRVFKKQLGMGVYKYLQKRRMA 62 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +++ L + I++IAL F SQ+ F+R FK + P YR Sbjct: 63 HASLLLLKSELKIIEIALISGFSSQEAFSRVFKSYYQLPPRQYR 106 >UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTW1_9CLOT Length = 286 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 33/303 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + ++ VA A S +H QRM+ +TG +G YIR RRL+ Sbjct: 1 MDWLNAMNKAVEYVEANITNKIDIEEVAKIALSSTFHFQRMYHMITGITVGEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 AV ++ I++I+ +Y +++ + FT+AF+K + +P R S P L Sbjct: 61 -LAVQDIISGEKIINISHKYGYETPEAFTKAFRKMYGVSPTAARESG--VNLKAYPKLSF 117 Query: 121 -----GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL--GNAPT 173 G+ M ++ E ++G S EQ +F + FW + G+ Sbjct: 118 HLSIKGDKDM-NYRIFDKESFMVVGKQAKISMIDEQ--NFSQVPK--FWRGCMKEGSYQW 172 Query: 174 IPPVLYGLNETRPSQDKDDEQEVF-YTTALAQDQA---DGYVLTGHPVMLQGGEYVMFTY 229 + L S+D D ++ F Y A+ + Q+ GYV P + Sbjct: 173 MSSKAGKLGILGISKDFDKYKDEFNYMMAIEKIQSTIPKGYVSANIPAATWAA------F 226 Query: 230 EGLG---TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 E +G + + + +Y MP + D+E YP D + N CE+ IP Sbjct: 227 EAVGPVPEVLHDLLRRIYSEWMPSMGYQHDCAPDLE-IYPIGDMFSR----NYSCEIWIP 281 Query: 287 IRR 289 I++ Sbjct: 282 IKK 284 >UniRef50_C7HA83 Transcriptional regulator, AraC family n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA83_9FIRM Length = 325 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 5/99 (5%) Query: 7 IRD-LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +RD LL EG++ SL +A + G S HLQ+MFK V G + YI+ RL ++AV Sbjct: 215 LRDHLLTNREGYV----SLAQLAEEHGISVSHLQKMFKQVYGVPVYHYIKEYRLEQAAVE 270 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L +A+PI IA +D+ F+ AF+K++ TP+ YR Sbjct: 271 LVRSAKPITQIAQNAGYDNASKFSEAFRKRYGTTPSQYR 309 >UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7G8V4_9FIRM Length = 310 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 54/97 (55%) Query: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 ++L +++ H + L+LDN+A +G+SK+H R+FK T Y+ RR+ + L Sbjct: 205 NEVLDYIDSHYTEELTLDNIADFSGFSKYHFTRLFKQYTDSTFYDYLIYRRIKAAEELLA 264 Query: 68 LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 I +IALQ F S TF R FK++ TP+ YR Sbjct: 265 NPELSITEIALQSGFSSISTFNRIFKQKKGCTPSEYR 301 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA-RPILD 75 HLD+ L+L ++ A +SK+H R+F TG ++ YIR RL ++A L + + I++ Sbjct: 17 HLDEKLTLAQLSDVACFSKYHFHRLFTAYTGLSLQQYIRWLRLKRAAHQLIVDKDKTIIE 76 Query: 76 IALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF 112 IA+ F+S + FTRAFK+ +P + P W + Sbjct: 77 IAINAGFESNEAFTRAFKQVCGVSPTKFISQPSWHGW 113 >UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RHZ9_9MOLU Length = 280 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E HL + + + +A AG +H Q+ F +T ++ YIR RR+S +AV L+ Sbjct: 13 YIENHLTEKIDYEQLAKIAGCPSYHFQKTFLYMTNISLSEYIRKRRISLAAVDLQTGEDK 72 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 I+DIAL+Y ++S F RAF+ P+L R+ Sbjct: 73 IIDIALKYGYESPTAFNRAFQAVHGIAPSLVRK 105 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 60/96 (62%), Gaps = 1/96 (1%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L ++E +L+ LSL++++ KA YS +H R+F + G + Y+ +R+ + A L + Sbjct: 17 VLDFIEKNLEADLSLESLSKKAYYSPYHFHRVFSTIVGENLNQYVNRKRIERIASILLIR 76 Query: 70 A-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + PI ++A Y F+S+ +F+RAFKK + +P ++ Sbjct: 77 SDTPIKELAYIYGFNSESSFSRAFKKYYGISPTRFK 112 >UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I706_CLOCE Length = 284 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 56/104 (53%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L +S + A A S +H QRMF +T + YIR RRL+ Sbjct: 1 MDWLNRMNKAIDYIESNLADKISYNKAAQIACCSTYHFQRMFSSITDVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +A L+ + ++D+A +Y ++S + F+RAFKK P R Sbjct: 61 LAAFELQTSDIKVIDVAFKYGYESPEAFSRAFKKLHGVMPTSAR 104 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 1/102 (0%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK-SAVALRLTAR 71 ++E +L + LSL+ VA +A +S +H R++ +TG ++ +I RL K +AVA+ R Sbjct: 17 YIEQNLGRSLSLEEVAQQAAFSPYHFHRLYTAMTGESLYQFILRLRLEKAAAVAVACPHR 76 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG 113 I +IAL+ F S TF RAFK +F + + YR + A G Sbjct: 77 SITEIALETGFSSPATFARAFKAKFGVSASEYRGRKDRKAVG 118 >UniRef50_C7QAN2 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QAN2_CATAD Length = 156 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%) Query: 20 QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQ 79 +P+ LD+VAA AGYS++H R+FK V G G Y+ RR+ +S LR + +I + Sbjct: 33 EPIDLDDVAASAGYSRYHFIRLFKQVYGETPGQYLSRRRVERSQDLLRSANLTVTEICVA 92 Query: 80 YRFDSQQTFTRAFKKQFAQTPALYRRS 106 F+S +F FK+ QTP +R++ Sbjct: 93 VGFESLGSFCTRFKQLTGQTPTEFRQA 119 >UniRef50_A6LX85 Transcription activator, effector binding n=2 Tax=Bacteria RepID=A6LX85_CLOB8 Length = 297 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 128/297 (43%), Gaps = 34/297 (11%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E HL + ++ +NVA + S ++ R+F + G YIR R+LS + L+LT Sbjct: 13 YMESHLLEKINYENVAKEVHMSCYNFHRIFSLMAGITANEYIRNRKLSLAGQELQLTDSK 72 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE----WSAFGIRPPLRLGEFTMPEH 128 I+D+A +Y +++ ++F +AF + +P L +R ++ I+ L G TM + Sbjct: 73 IIDVAFKYGYETPESFAKAFSRFHGVSPKLAKRKGTQLCLFNPLAIKIILEGGN-TM-NY 130 Query: 129 KFVTLEDTPLIGVTQSYSCSL------EQISDFRHEMRYQFWHDFLGNA-PTIPPVLYGL 181 + I +++S + I DF E + + + N P LYGL Sbjct: 131 RIEETGKQRFIAKVRAFSNEIMNEAGNHDIPDFWGECHKEHLVEEIRNMRPDGKKDLYGL 190 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG--------GEYVMF-TYEGL 232 S K +E Y + D+ D ++ ++ +G YV+F Y Sbjct: 191 ----CSPTKKNETTFDYGIGVLIDE-DTHIDNEEAMLKKGYRIWEVDSATYVVFKCYGNN 245 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + E + +P + + + D E Y + + G L CEL IP++R Sbjct: 246 GDCISEMWSRFFKEFLPQSDYEQTEDTDYEIY--LNEGEPG-----LFCELWIPVKR 295 >UniRef50_UPI0001C35507 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35507 Length = 307 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 LL ++ H +PL+L+ +A G+SK+H R+FK T Y+ +R+ ++A L Sbjct: 197 FNSLLSYINDHFAEPLTLEKMADYTGFSKYHFTRLFKQHTNSTFYDYLSRKRI-QAAQTL 255 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 T I IA Q F++ +FTR FKK +P+ YR Sbjct: 256 LTTDASITSIAFQTGFNNSTSFTRCFKKYTNYSPSEYR 293 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 58/104 (55%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + + ++E +L + D VA KA S +H QRMF +T + YIR RRL+ Sbjct: 1 MNWLDKMNEAICYVEDNLAGEIDFDEVARKACCSTYHFQRMFSFITEVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 +A L+ ++ ++++A +Y ++S FTRAF+ TP R Sbjct: 61 LAAFELQNSSVKVIELAFKYGYESPDAFTRAFQNLHGVTPTSAR 104 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 ++ +++ HLD + L +A A +S +H R+F G +G Y+R RRL +A+ L Sbjct: 21 VMDYIDSHLDGDIDLAALADVAHFSPFHFHRLFAAWMGATLGDYVRRRRLEVAALQLAGN 80 Query: 70 AR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP--EWSA--FGIRPP 117 R +L++AL F S + F RAFK +F Q+P+ +R + W+A G+R P Sbjct: 81 TRISVLEVALGVGFGSGEAFARAFKLRFGQSPSAWRAATPQRWAAELRGVRKP 133 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ +L ++ H +S++ +A YSK + + FK+ G + Y+ RL +A L Sbjct: 191 IKTILSYVAEHFQDNISIEEIAGHCFYSKSYFMKFFKETMGMSFVQYLNDYRLEVAAKLL 250 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 T+ I++IA+ FD+ F R FKK++ TP YR+ Sbjct: 251 TTTSDDIINIAINTGFDNLSYFNRCFKKKYGITPGKYRK 289 >UniRef50_A8W051 Homocysteine S-methyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W051_9BACI Length = 161 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%) Query: 17 HLDQPL----SLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 HL+ PL A+ AG S++HL+R+F + G I AY+R RRLS++A R Sbjct: 13 HLENPLLEEPDYQKFASIAGCSEYHLKRIFPFLVGETISAYVRMRRLSRAAEDFREGDAK 72 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 I+D+AL+Y + S FTRAF TP + + ++F PP+ L Sbjct: 73 IIDLALKYGYHSADAFTRAFSHFHGVTPTGGKT--DGASFNWYPPVFL 118 >UniRef50_C2LFG5 Transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=C2LFG5_PROMI Length = 195 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 55/94 (58%) Query: 12 IWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTAR 71 +WLE L PL+ ++A S LQR K G +I Y+ +RL+KSA L+ T+ Sbjct: 102 LWLEDKLHMPLTASDIAGALNISISTLQRKVKAELGISIMQYVMQKRLAKSAELLKYTSL 161 Query: 72 PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 I +IAL +DS F++AF++ F +TP+ YR+ Sbjct: 162 TIENIALAVGYDSHSAFSQAFRQYFHKTPSEYRQ 195 >UniRef50_A6CWX4 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CWX4_9VIBR Length = 316 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +I+ L +++ H +PL+L ++A ++G S ++ RMFK V G Y+ R+SK+ Sbjct: 186 LIKTCLTYIDSHYMEPLTLTDIAERSGLSYHYVSRMFKRVCGFNFKDYLTFIRVSKALPL 245 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L T PI DIA + F + AF+K + QTP +R+ Sbjct: 246 LCDTTFPITDIAHKCGFSEHKLLIAAFRKYYDQTPTAFRK 285 >UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYK8_9FIRM Length = 309 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 13 WLEGHLDQPLSLD-NVAAKAGYSK-WHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 ++E HL LD N A+ YS + +++F +TG+ IG YIR RRLS + L + Sbjct: 19 YIETHLIDGEVLDQNTIARQAYSSPDNFRKVFHLITGYTIGEYIRNRRLSLAGEELISSN 78 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE--FTMPEH 128 R + DIAL+Y +D+ ++FT+AF + +P+ R + R LR+ +M + Sbjct: 79 RTVTDIALEYGYDTPESFTKAFTRFHGNSPSYVRNNKSGLHNFTRIVLRVTADGGSMLNY 138 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQ------ISDFRHEMRYQFWHDFL 168 + V + + + G ++ ++ SL+ I F E Q W + Sbjct: 139 RIVKINNMCIAGYSRVFT-SLDTAKNNVLIPKFTRECCSQSWDKLM 183 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 +E ++P L+ +AA A S QR F++ G + G Y+R RL ++A+ L ++ + Sbjct: 61 IESTTEEPFPLERIAAHANLSASRFQRRFQEAMGESPGEYLRRTRLDRAAIFLIISQESV 120 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L IAL + S + F RAF +QF P YR+ Sbjct: 121 LSIALSTGYASHEAFIRAFHRQFGLVPTQYRQ 152 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 34/278 (12%) Query: 22 LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYR 81 LSLD +A A S++H R+F +TG + +R R+ ++A L T P+ IA + Sbjct: 13 LSLDCLADVAAMSRFHWHRVFSALTGESCAQIVRRVRMHRAAFWLVQTEWPLAKIAREVG 72 Query: 82 FDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTP---- 137 +++ Q+FTRAF++ F P R + +R + G+ M V +ED P Sbjct: 73 YNNTQSFTRAFREVFDAKPLEIRAAQAQHVLTLR--CKEGDEDM---YGVKVEDAPERRL 127 Query: 138 ----LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDE 193 +G S S E+++ +R W G + G+ PS + E Sbjct: 128 AAMAHVGAYNGVSKSYEKVAAV-FTIR-DLWKHARG--------MVGIYYDDPSTVPEAE 177 Query: 194 QEVFYTTALAQDQADGYVLTGHP---VMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM 250 + LA D V+ P V+++G E + +G TG+QE +YG +P Sbjct: 178 LRSYAAVELADD-----VVVPDPLEEVLIRGDESAVLVMKGAYTGLQEAYEWLYGQWLPQ 232 Query: 251 LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L E Y ++ P +L ++ +P++ Sbjct: 233 SGLMPADQPSYEIYL---NSPMDTAPADLLTQIYVPLQ 267 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 57/99 (57%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +R LL LE + +PLS VAA YS ++ R+F+ V +IG YI+ L ++A L Sbjct: 10 LRSLLNLLENNFTKPLSSSEVAAATFYSYRNINRIFRAVFHKSIGRYIKELLLQEAARRL 69 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 + + I DIA + + Q F +AF+++F +P+ +R+ Sbjct: 70 AYSDKAITDIAFELNYSDLQAFNKAFRREFDCSPSQFRQ 108 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++ HLD SLD VA A S +H R+FK + G I + R R+ ++ A RL A P Sbjct: 20 YISQHLDDNPSLDEVATAAAISTFHFHRIFKTMVGETIAGFTRRLRMERA--ARRLLAAP 77 Query: 73 ILDI---ALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 DI AL F S Q F +AF+ FA +P+ YR+ Sbjct: 78 QSDITTLALAAGFSSSQNFAKAFRLHFAMSPSEYRQ 113 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 64/106 (60%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ + ++E +++ +++D A A S + RMF +TG+++ YIR RR+S +A+ + Sbjct: 7 IQKSIDYIESNVENKINIDFAAQTAFMSLSNFYRMFFALTGYSVKEYIRLRRISLAAIDI 66 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF 112 + T ++DIA+++ F+S +F+RAFK+ P+ YR+ F Sbjct: 67 QGTDTCLIDIAIKFDFESGDSFSRAFKRITGFLPSDYRKKKSLYKF 112 >UniRef50_C9XX01 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XX01_CROTZ Length = 306 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 50/92 (54%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 L+ +L P L +A G S WHL R FK TG + + +R+ ++ LR T+ P+ Sbjct: 214 LQANLAAPFHLPTLAQMCGMSSWHLSRQFKQATGMSPSEWFIHQRIQRACRLLRETSLPV 273 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +DIA + + S F++ F+++ PA YRR Sbjct: 274 IDIACEVGYASHSHFSQVFRRKTGMQPAAYRR 305 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 1/108 (0%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++D+L +E L++ LS+D +A S++H R+F G + IR RL ++A L Sbjct: 31 LQDVLANIESSLEEDLSVDQLAQLTHVSRFHFHRLFSATFGLGVMTLIRRLRLKRAAFRL 90 Query: 67 RLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG 113 A I +I +DS + F RAF+K F P+ +RRSP++S + Sbjct: 91 AYRAGDSITNIGYDCGYDSPEAFNRAFRKHFGLAPSDFRRSPDFSVWA 138 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 28/273 (10%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I ++ ++ +L PL LD +A + S+ L R+ K ++ AY+ +R+ ++ + + Sbjct: 13 INQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERAVLYM 72 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY------RRSPEWSAFGIRPPLRL 120 + D+A + +D+ Q+F++AFKKQF+ +P Y R E + L + Sbjct: 73 HTEDMSLADLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETEKWSNPHDLEV 132 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHD--FLGNAPTIPPVL 178 + + V + G + Y + + F E + D F+G + P Sbjct: 133 EVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQ-ALSEDTRFIGLSFDDP--- 188 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 N T P Q + FY A + + G + LQ G+Y ++T +G G+QE Sbjct: 189 ---NVTHPDQCR------FYACASVGKEIIPSGMFG-TIRLQKGKYAVYTLKGSYAGLQE 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERY--YPAED 269 +Y T N T+R G E Y Y ED Sbjct: 239 ----LYNTINIDFNYTKRHGMAFEEYVSYSEED 267 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 5/101 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ +++ H + LSLD +AA A +S +H R+FK +TG + +I+ RL +A Sbjct: 40 VNRVIDYIQAHRAEDLSLDTLAAVAAFSPFHFHRVFKSMTGENLREFIQRTRLETAAS-- 97 Query: 67 RLTARP---ILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L RP IL+IAL+ F S F RAFK++F + + +R Sbjct: 98 HLVQRPHADILEIALENGFSSASAFARAFKERFGMSASAWR 138 >UniRef50_A3T2N4 Helix-turn-helix, AraC type: AraC protein n=3 Tax=Rhodobacteraceae RepID=A3T2N4_9RHOB Length = 301 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 53/92 (57%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 +E L + LSL+++AA G+S++H R FK G A AY+ +R+SK+ LR P+ Sbjct: 208 VESCLGENLSLEDMAASIGFSQFHFSRQFKAEFGLAPYAYVLRKRISKAQEMLRKGNAPL 267 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +AL F Q F+R F+K TPA +RR Sbjct: 268 KVVALDCGFADQSHFSRTFRKMTGATPAEFRR 299 >UniRef50_B6FV70 Putative uncharacterized protein n=3 Tax=Clostridium RepID=B6FV70_9CLOT Length = 309 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I D+L ++ +L LS+D++A++ SK+++ R+FK TG+++G YI +RL A L Sbjct: 193 IADILHYINANLSAHLSIDDLASRFYLSKYYMMRLFKSETGYSLGNYITQKRL-LFAKDL 251 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP 100 L P+L+ F TF+RA++K F ++P Sbjct: 252 ILQGSPVLEACFDCGFQDYSTFSRAYRKCFHESP 285 >UniRef50_C3RI67 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RI67_9MOLU Length = 263 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 58/100 (58%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 II+ ++ ++E H D LSL +A +S+ +L RMFK+ TG + +YI RL+ + Sbjct: 163 IIKQIVTYIEQHYDDELSLTILANHFHFSEVYLSRMFKEKTGITLLSYINKIRLNHAYND 222 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L T+ I +IAL + F + + F + FK+ + P+ YR+ Sbjct: 223 LMNTSLTINEIALNHGFKNVKAFNKIFKEYYHDIPSKYRK 262 >UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQY0_CLOCL Length = 286 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 57/94 (60%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E H+ ++L +V+ YS +H R+F + + YIR R+L+ +A+ L+ Sbjct: 13 YIEEHICDDIALADVSEVTTYSSYHFGRLFYYIAEMPLSEYIRKRKLTLAAMELQSNDVK 72 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 ++D+A++Y +D+ +FTRAF +Q TP + R++ Sbjct: 73 VIDLAVKYGYDNADSFTRAFVRQHGVTPTVGRQT 106 >UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=Enterobacteriaceae RepID=A4WEG5_ENT38 Length = 279 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 51/102 (50%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 GI ++ WL+ H Q SLD +A + G S+ ++ R F TG I Y+ RL K+ Sbjct: 174 GIASQVMFWLDEHYQQKFSLDALAGELGKSRSYVSRKFHAETGEKIHDYLNTLRLRKACE 233 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L + + DIA + F F AFKK +TP YR++ Sbjct: 234 CLLHSNESVRDIATRVGFSDVTYFISAFKKGIGETPLQYRKN 275 >UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC4194 Length = 277 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/275 (22%), Positives = 120/275 (43%), Gaps = 35/275 (12%) Query: 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72 ++E +L+ + + A S +H QRMF + G +G YIR R+++K+A L+ + Sbjct: 13 YIEMNLENKIDYTKASKIACCSVYHFQRMFSYIAGVTLGEYIRRRKMTKAAFELQRSDIK 72 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK--- 129 IL+++ +Y +DS +F+RAF+ +P++ R P L E + Sbjct: 73 ILELSAKYGYDSPTSFSRAFQSIHKISPSIARNKN--ITLKTYPKLTFSLSVKGEEELEY 130 Query: 130 FVTLEDT-PLIGVTQSYSCSLE----QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 ++T +D+ ++G+ + +E +I D FW++ + N + Y Sbjct: 131 YITEKDSLDILGIGKKIELDMEKNFFEIPD--------FWNENIKNKNIEKLLKYN---- 178 Query: 185 RPSQDKD-------DEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTGV 236 ++DK+ + +EV+Y A+ D+ + H + GG + +F Sbjct: 179 --AKDKNILGVSLYNNKEVWYYIAVFNDREGEDGMERHKI--PGGTWAVFRCSSPFLENS 234 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAK 271 Q+ Y +P T + DIE YP + K Sbjct: 235 QKIYRRFYTEWLPHSGYTYGETADIE-IYPDSNEK 268 >UniRef50_B2IKR9 Transcriptional regulator, AraC family n=4 Tax=Rhizobiales RepID=B2IKR9_BEII9 Length = 292 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 55/98 (56%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ +L ++E L ++LD++AA+A S +H R+FKD TG + Y+ RR+ + L Sbjct: 190 LKRVLDFIEARLATDIALDDLAAEACLSPFHFSRLFKDATGLSPHRYVTDRRVQAARDKL 249 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L +++IAL F SQ F R F+K TP YR Sbjct: 250 ALRHSSLIEIALDTGFGSQANFIRVFRKATGLTPGQYR 287 >UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A4C8_9BACT Length = 309 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 57/102 (55%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A +R + ++E HLD+ LD +A +AG SK+H R+F+ TG + Y R+ + Sbjct: 206 ASSLRRITDFMEAHLDEEFRLDELAREAGMSKFHFCRLFRKTTGLSPSRYFIRLRMEMAR 265 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 LR T+R ++++ L+ + S F + F+++ P+ YRR Sbjct: 266 RLLRETSRSVIEVGLEVGYSSPSHFAQVFQREAGVPPSEYRR 307 >UniRef50_A9KRM0 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=A9KRM0_CLOPH Length = 296 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 + H +P+++D++A AG+SK+H R+FK+ +G + Y+ +R+ + L I Sbjct: 191 INEHCTEPINVDDLAQLAGFSKYHFMRLFKEFSGISYYDYLNKQRIMHAEKLLIDPNLTI 250 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +IA+ F+S TF R FK+Q TP+ Y+R Sbjct: 251 TEIAMHSGFNSLATFNRIFKEQKQCTPSEYKR 282 >UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD23_9ACTN Length = 305 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 21/174 (12%) Query: 9 DLLIWLEG----------HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 D + W+EG HLD + + A A S+ +RMF V G + YIR RR Sbjct: 9 DFMGWIEGLNASMEYIEKHLDDDIDVVEAARLATCSEGQFRRMFSYVAGVGLTEYIRRRR 68 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 LS +A+AL R ++D+A++ + S FTRAF++ F +P+ RR + + P L Sbjct: 69 LSCAALALSRGER-VIDVAIRCGYASSTAFTRAFREAFGVSPSDARRPG--TTLCVFPQL 125 Query: 119 RLGEFTMPEH----KFVTLEDTPLIGVT----QSYSCSLEQISDFRHEMRYQFW 164 + + VT ++ LIG+ + L Q++D E FW Sbjct: 126 TFSLAVVGSEPLSWRIVTHDEMRLIGIAFPCDAAMDAPLIQMADEGREELRHFW 179 >UniRef50_B1KXK2 Transcriptional regulator, AraC family n=6 Tax=Clostridium botulinum RepID=B1KXK2_CLOBM Length = 375 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 56/101 (55%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ +L ++E +L + SL +A +S ++ +F G + +Y++ RRL +A L Sbjct: 6 MKRILDFVENNLTEDFSLSKLANHCNFSPYYCSVIFHRYFGETMKSYMQKRRLLCAAKEL 65 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 + T I+DIA++Y + SQ+ F+RAF P +R +P Sbjct: 66 KSTNDRIIDIAIKYGYSSQEAFSRAFSDMIGMAPKRFRENP 106 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobac... 401 e-110 UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular or... 373 e-102 UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonu... 312 1e-83 UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobact... 307 2e-82 UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=S... 271 2e-71 UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterob... 269 8e-71 UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Pr... 266 5e-70 UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salm... 260 4e-68 UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia... 258 2e-67 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 256 5e-67 UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mir... 247 3e-64 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 245 1e-63 UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salm... 237 4e-61 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 237 5e-61 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 236 8e-61 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 233 6e-60 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 231 2e-59 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 227 3e-58 UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=D... 226 6e-58 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 226 8e-58 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 225 1e-57 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 225 1e-57 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 225 1e-57 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 224 2e-57 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 224 2e-57 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 224 3e-57 UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=S... 223 5e-57 UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=So... 223 6e-57 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 223 6e-57 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 223 7e-57 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 223 8e-57 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 222 1e-56 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 221 2e-56 UniRef50_A6M032 Transcription activator, effector binding n=19 T... 220 3e-56 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 220 4e-56 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 219 9e-56 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 217 3e-55 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 217 3e-55 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 217 4e-55 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 217 5e-55 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 217 5e-55 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 217 5e-55 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 216 6e-55 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 216 6e-55 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 215 1e-54 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 215 1e-54 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 215 1e-54 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 215 1e-54 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 215 2e-54 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 214 2e-54 UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ... 214 4e-54 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 214 5e-54 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 213 5e-54 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 213 7e-54 UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmone... 212 1e-53 UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. ... 211 2e-53 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 211 2e-53 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 211 2e-53 UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=P... 210 3e-53 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 210 3e-53 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 210 4e-53 UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Cl... 209 7e-53 UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escheri... 209 7e-53 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 209 8e-53 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 209 8e-53 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 208 2e-52 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 208 2e-52 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 208 2e-52 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 207 3e-52 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 207 3e-52 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 206 6e-52 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 206 7e-52 UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=C... 206 9e-52 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 205 1e-51 UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=C... 205 1e-51 UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C... 205 1e-51 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 205 2e-51 UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ... 205 2e-51 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 204 2e-51 UniRef50_A4BA46 Transcriptional regulator, AraC family protein n... 204 2e-51 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 203 6e-51 UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reineke... 203 6e-51 UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Ba... 202 1e-50 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 202 1e-50 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 201 2e-50 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 200 3e-50 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 200 6e-50 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 200 7e-50 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 199 8e-50 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 199 1e-49 UniRef50_P96662 Uncharacterized HTH-type transcriptional regulat... 199 1e-49 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 198 1e-49 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 198 1e-49 UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=... 198 2e-49 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 197 6e-49 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 196 9e-49 UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC ... 196 9e-49 UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri... 195 1e-48 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 195 2e-48 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 193 5e-48 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 193 5e-48 UniRef50_A6LX85 Transcription activator, effector binding n=2 Ta... 193 6e-48 UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=C... 192 1e-47 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 192 1e-47 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 192 2e-47 UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 T... 191 2e-47 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 191 3e-47 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 191 3e-47 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 190 6e-47 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 190 6e-47 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 190 6e-47 UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp... 189 1e-46 UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=... 188 1e-46 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 188 1e-46 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 188 2e-46 UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr... 188 2e-46 UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID... 187 3e-46 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 187 3e-46 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 187 4e-46 UniRef50_B8I0Z7 Transcriptional regulator, AraC family n=3 Tax=C... 187 4e-46 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 185 2e-45 UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_E... 185 2e-45 UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=S... 184 2e-45 UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=K... 184 3e-45 UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=... 184 4e-45 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 183 4e-45 UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevi... 183 5e-45 UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collins... 183 5e-45 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 183 6e-45 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 183 7e-45 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 183 7e-45 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 182 9e-45 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 182 1e-44 UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=C... 182 2e-44 UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicu... 181 3e-44 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 180 4e-44 UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX 180 6e-44 UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Er... 178 2e-43 UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B... 178 2e-43 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 178 2e-43 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 178 3e-43 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 177 5e-43 UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersini... 176 7e-43 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 176 8e-43 UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=F... 175 1e-42 UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C... 175 2e-42 UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=C... 174 3e-42 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 172 2e-41 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 171 2e-41 UniRef50_B8FSS1 Transcriptional regulator, AraC family n=6 Tax=C... 171 3e-41 UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2... 171 3e-41 UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=... 169 8e-41 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 169 8e-41 UniRef50_A6M0H0 Transcription activator, effector binding n=2 Ta... 169 1e-40 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 169 1e-40 UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=... 169 1e-40 UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA... 168 2e-40 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 168 2e-40 UniRef50_C6CRD1 Transcriptional regulator, AraC family n=2 Tax=F... 167 5e-40 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 165 1e-39 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 163 5e-39 UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=B... 163 5e-39 UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escheri... 163 6e-39 UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATC... 163 6e-39 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 163 8e-39 UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escheri... 163 8e-39 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 163 8e-39 UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r... 161 2e-38 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 161 3e-38 UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Ba... 160 4e-38 UniRef50_D1P760 F1 operon positive regulatory protein n=1 Tax=Pr... 160 6e-38 UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=E... 160 7e-38 UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=B... 160 8e-38 UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coproco... 158 2e-37 UniRef50_UPI0001789679 transcriptional regulator, AraC family n=... 158 2e-37 UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=C... 156 7e-37 UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n... 156 8e-37 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 156 1e-36 UniRef50_P26950 F1 operon positive regulatory protein n=19 Tax=Y... 155 2e-36 UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Cl... 154 3e-36 UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=C... 154 4e-36 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 153 8e-36 UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostri... 152 1e-35 UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Entero... 152 1e-35 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 151 3e-35 UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Fi... 151 3e-35 UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=... 151 3e-35 UniRef50_A8FAK8 Possible AraC family transcriptional regulator n... 150 6e-35 UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostri... 149 1e-34 UniRef50_B9Y4X5 Putative uncharacterized protein n=5 Tax=Firmicu... 148 2e-34 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 148 2e-34 UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmanie... 148 2e-34 UniRef50_Q47QG5 Transcriptional regulator, AraC family n=17 Tax=... 148 2e-34 UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria ... 148 2e-34 UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwa... 148 2e-34 UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC... 147 5e-34 UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC ... 146 8e-34 UniRef50_A4QAY1 Putative uncharacterized protein n=1 Tax=Coryneb... 146 9e-34 UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC... 145 1e-33 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 145 2e-33 UniRef50_A4WA37 Transcriptional regulator, AraC family n=3 Tax=E... 145 2e-33 UniRef50_P28816 Transposon Tn10 tetD protein n=29 Tax=root RepID... 145 2e-33 UniRef50_A8GD44 Transcriptional regulator, AraC family n=9 Tax=E... 145 2e-33 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 144 3e-33 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 144 3e-33 UniRef50_A5W8X4 Transcriptional regulator, AraC family n=13 Tax=... 144 3e-33 UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=D... 143 5e-33 UniRef50_A5V467 Transcriptional regulator, AraC family n=1 Tax=S... 143 6e-33 UniRef50_Q48413 Transcriptional activator ramA n=51 Tax=Bacteria... 143 1e-32 UniRef50_D1NY75 Multiple antibiotic resistance protein MarA n=5 ... 142 2e-32 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_P43463 HTH-type transcriptional activator aarP n=3 Tax=... 141 2e-32 UniRef50_Q2B3U5 Transcriptional regulator (AraC/XylS family) pro... 141 2e-32 UniRef50_A8GHJ0 Transcriptional regulator, AraC family n=1 Tax=S... 140 5e-32 UniRef50_Q180J9 AraC-family transcriptional regulator n=4 Tax=Cl... 140 7e-32 UniRef50_C9XKB1 AraC-family transcriptional regulator n=18 Tax=C... 140 8e-32 UniRef50_A6UK12 Helix-turn-helix-domain containing protein AraC ... 139 9e-32 UniRef50_B1HZR5 Transcriptional regulator (AraC/XylS family) n=1... 139 9e-32 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 139 9e-32 UniRef50_A8I184 Transcriptional regulator n=3 Tax=Rhizobiales Re... 139 1e-31 UniRef50_C0D9U5 Putative uncharacterized protein n=1 Tax=Clostri... 139 1e-31 Sequences not found previously or not previously below threshold: UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 215 1e-54 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 199 8e-50 UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=B... 197 3e-49 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 195 1e-48 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 195 2e-48 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 191 2e-47 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 181 2e-44 UniRef50_A9KJ61 Transcriptional regulator, AraC family n=2 Tax=F... 175 1e-42 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 175 1e-42 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 175 1e-42 UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=A... 175 2e-42 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 172 1e-41 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 170 4e-41 UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=C... 170 6e-41 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 168 2e-40 UniRef50_C5EKR4 AraC-family transcriptional regulator n=2 Tax=Cl... 166 8e-40 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 164 4e-39 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 163 6e-39 UniRef50_B0MC81 Putative uncharacterized protein n=2 Tax=Clostri... 161 3e-38 UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-bindin... 160 5e-38 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 160 6e-38 UniRef50_C4L2T4 Transcriptional regulator, AraC family n=25 Tax=... 158 3e-37 UniRef50_D1B3I6 Transcription activator effector binding protein... 155 1e-36 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 150 5e-35 UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A... 149 1e-34 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 148 2e-34 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 146 9e-34 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 144 4e-33 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 141 2e-32 >UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobacteriaceae RepID=ROB_ECO57 Length = 289 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR Sbjct: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 >UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular organisms RepID=C4X304_KLEPN Length = 289 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 235/289 (81%), Positives = 264/289 (91%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLL WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQF+ TPALYRRSP+WS+FG+RPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFT+P+H+F+TL T L+GVTQSY+C LE+ISDFR++MR QFW DFLGN+P+IPPVLYG Sbjct: 121 GEFTLPKHEFITLPPTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+E RPS +KDDEQEVFYTTAL + A+G++ HPV L+GGEYVMFTYEGLGTG+QEFI Sbjct: 181 LHEPRPSLEKDDEQEVFYTTALTPEMANGHLQHAHPVTLEGGEYVMFTYEGLGTGLQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPML+LTRRKG DIER+YP ++++ PI LRCE LIPIRR Sbjct: 241 LTVYGTCMPMLHLTRRKGLDIERFYPEDESRDQATPIQLRCEYLIPIRR 289 >UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TW49_9ENTR Length = 305 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 162/296 (54%), Positives = 201/296 (67%), Gaps = 7/296 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL W++ HLDQPL LDNVAAKAGYSKWHLQRMFK++T AIG+YIRARRLS Sbjct: 1 MDQNNIIRDLLYWIDTHLDQPLFLDNVAAKAGYSKWHLQRMFKNITQQAIGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF TPALYRRS +W A G++PP+ L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFGITPALYRRSEDWCATGMQPPITL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E +P FVTL L+G+ Q+ S LE+ S EMR FW + A IP +YG Sbjct: 121 EEQKLPNVSFVTLTPKHLMGIEQTCSYILEEWSTACAEMRKHFWQYYQDKAKNIPNEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG--TGVQE 238 L+ S +KD+EQ V Y TA+ AD H ++++GG+Y FT+EG + +Q+ Sbjct: 181 LHRVVHSSEKDEEQTVLYITAVEPQYADNKNNLYHSIIIEGGDYARFTFEGKPTKSDLQQ 240 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYY---PAEDAKAGDRPIN--LRCELLIPIRR 289 F+ +YG MP LNLTRR G DIE Y+ P D P N + + +PI+R Sbjct: 241 FLYMIYGVYMPNLNLTRRAGHDIEHYHLKDPNNPECNYDNPENHMVAFDYFVPIKR 296 >UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobacteriaceae RepID=B4EY53_PROMH Length = 300 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 165/297 (55%), Positives = 210/297 (70%), Gaps = 8/297 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL WL+ +LDQPLSLDNVA KAGYSKWHLQRMFK+VTG AIG+YIR+RRLS Sbjct: 1 MDQTNIIRDLLAWLDNNLDQPLSLDNVATKAGYSKWHLQRMFKEVTGQAIGSYIRSRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF +TPALYRRS EW A GI PP++L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFDRTPALYRRSDEWCAVGICPPIKL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ ++V L + LIG+ Q+ S +LEQ ++ +MR FW +++ TIP +YG Sbjct: 121 DPQPLPKWEYVQLPEIKLIGIEQTCSHTLEQWANACSDMRQTFWQNYITKVNTIPHEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTYEGLGT--GVQ 237 L+ T+ S + +DEQ V YTTA+ A T + V+L+ G+Y+ F +EG +Q Sbjct: 181 LHHTQHSDEHEDEQRVIYTTAVEPAYASFVEDDTAYEVILEAGDYIRFDFEGEAKRGAMQ 240 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAE---DAKAGDRPIN--LRCELLIPIRR 289 EF+ +YG C+P + LTRRKG DIE+YY E D P + R E IPI+R Sbjct: 241 EFLFLIYGVCLPTMGLTRRKGHDIEKYYLKEVHYDNVMTAEPQDHIKRFEYYIPIKR 297 >UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=Serratia proteamaculans 568 RepID=A8G9B3_SERP5 Length = 292 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 131/288 (45%), Positives = 178/288 (61%), Gaps = 5/288 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +I LL W+E +LDQPL+LD++AAK+GYSKWHLQR+FK++TG +G Y R RRL+ Sbjct: 1 MYQQQVITALLAWIEQNLDQPLTLDDIAAKSGYSKWHLQRLFKELTGEILGTYARRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A LRLT + IA +Y+FDSQQTFTR FKKQF PA YRRS +WS G++PPLRL Sbjct: 61 AAARELRLTNHGVAFIADKYQFDSQQTFTRCFKKQFGMPPAGYRRSTDWSGLGMQPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + +P+ + +TL LIG TQ SC+L Q+ ++E+R W + V+YG Sbjct: 121 MDAPLPQAEIITLPAMQLIGHTQHRSCTLGQLLHSKNELRQHAWRQMMPKEAETLAVVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L Q + YT ALA ++A+G V+++ G+Y FTY+G +Q FI Sbjct: 181 LTSLEADSRLRGRQRMAYTLALADERAEG-----ERVLIEQGDYASFTYQGQVEELQNFI 235 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y T +PM+ RR G+DIER+YPA +RCE LIPIR Sbjct: 236 ARLYDTAIPMMKAIRRPGKDIERFYPALGGVCCAGGTAIRCEYLIPIR 283 >UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B6XK96_9ENTR Length = 310 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 116/294 (39%), Positives = 165/294 (56%), Gaps = 9/294 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK TG A+GAYIRARRLS Sbjct: 17 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKTQTGLALGAYIRARRLS 76 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G R PLR Sbjct: 77 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFRLPLRE 136 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + V L+D L+G+T Y+ + + + E+R Q+W +FL + LY Sbjct: 137 SKELEAHVQLVELKDIHLVGMTHRYTQGINEWNLKTEELRRQYWKNFLDKNKLVAQNLYA 196 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL--GTGVQE 238 ++ D+E Y+TA ++ + +M+ G Y+ ++G GT + Sbjct: 197 IHGVD--TTSDEEGRFLYSTAFEENALEVIPPLTKKLMVPAGNYLQIKFKGSLQGTDYND 254 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD---RPINLRCE--LLIPI 287 I TVYG + +++ R G DIE Y D P + E IP+ Sbjct: 255 IIYTVYGKVLAEMDIARGLGADIEHYALKSAPTYEDFVSHPHDYIQELNYYIPV 308 >UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Proteus RepID=B4EVW5_PROMH Length = 304 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 104/286 (36%), Positives = 157/286 (54%), Gaps = 1/286 (0%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I++LL+W+E +L++PL LD+VA K+GY+KWHLQR+FK TG + +YIR RRL+K+ Sbjct: 18 NIEVIKELLLWIEVNLEKPLLLDDVAIKSGYTKWHLQRVFKQATGLTLASYIRGRRLTKA 77 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LRLT P+L IAL+Y+FDSQQ+FTR FK F TP+ YR+ + +PP+ Sbjct: 78 ATELRLTKLPVLTIALRYQFDSQQSFTRRFKAVFGVTPSEYRKVDVLCSDNFQPPINFEV 137 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 +P + L ++ L + Y CS+E I ++R+QFW+DFL L Sbjct: 138 TDLPIPNIIELPESFLYVIQYQYFCSIEDIGKLHEDIRHQFWNDFLLYTDKNFTESSVLI 197 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 +P+ + D+ ++ Y L + GG YV F ++G ++F + Sbjct: 198 SYQPNTLRKDKIQIDYEIGLNNLDHFTRPRGFRKKAIAGGRYVRFQFKGTLEEYKQFAIK 257 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAE-DAKAGDRPINLRCELLIPI 287 +Y +P L L RR G DIE Y E D+ + P L + +PI Sbjct: 258 IYFYTLPALGLCRRLGPDIENYICIETDSDIMELPKTLEIDYYVPI 303 >UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190DF59 Length = 211 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 185/206 (89%), Positives = 198/206 (96%) Query: 84 SQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQ 143 +QQTFTRAFKKQF+QTPALYRRSPEWSAFGIRPPLRLGEFT+PEH+FVTLEDTPL+GVTQ Sbjct: 6 TQQTFTRAFKKQFSQTPALYRRSPEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQ 65 Query: 144 SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALA 203 SYSCSLEQISDFRHEMR QFWHDFLG++PTIPPVLYGLNETRPS +KDDEQEVFYTTAL Sbjct: 66 SYSCSLEQISDFRHEMRVQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTTALP 125 Query: 204 QDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIER 263 Q+QADGYV + HPV+LQGGEYVMFTYEGLGTGVQ+FILTVYGTCMPMLNLTRRKGQDIER Sbjct: 126 QEQADGYVQSAHPVLLQGGEYVMFTYEGLGTGVQDFILTVYGTCMPMLNLTRRKGQDIER 185 Query: 264 YYPAEDAKAGDRPINLRCELLIPIRR 289 YYP+ED K GDRPINLRCE LIPIRR Sbjct: 186 YYPSEDTKTGDRPINLRCEFLIPIRR 211 >UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia RepID=D1P487_9ENTR Length = 295 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 160/294 (54%), Gaps = 9/294 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK+ TG A+G+YIRARRLS Sbjct: 1 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKNQTGLALGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G PLR Sbjct: 61 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFCLPLRE 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + + V L + L+G+T Y+ + + + E+R Q+W FL + LY Sbjct: 121 SKELQAQVQLVELPEINLLGMTHRYTQGINEWNLKTEELRKQYWRTFLDKNKLVAQNLYA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL--GTGVQE 238 ++ + ++E Y+TA + + + G Y+ + G GT + Sbjct: 181 IHGVDTAS--EEEGRFLYSTAFNEQDMATVPPFSKSLKVPAGNYLEIKFLGNLQGTDYND 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPA---EDAKAGDRPINLRCE--LLIPI 287 I T YG + +++ R G DIE Y + + P E IP+ Sbjct: 239 IIYTAYGKVLAEMDIVRSTGCDIEHYVLKSTPSYEEFVNYPHEYIQELNYYIPV 292 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 123/286 (43%), Gaps = 10/286 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +LI ++ +LD+PL+++ +A A S +H R+F G + Y+R RL ++ Sbjct: 17 YQERLNRVLIHIQKNLDEPLTIERLAEVACLSPFHFHRIFSAHVGETVTGYVRRLRLERA 76 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A + T + D AL +++ FTRAF+++F +P+ +R + E Sbjct: 77 ATRIAFTGESVTDTALGVGYETPAAFTRAFRERFGMSPSEFRGQQRETILSFAENSTAKE 136 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + T ++ V ++ + + + M + + + + T ++ G+ Sbjct: 137 IIVMKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLM----TGETLMVGIG 192 Query: 183 ETRPSQDKDDEQEVFYTTALAQD-QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P+ +++ + D + +G V + GG Y +F ++G TG+ E Sbjct: 193 HDDPAITAEEKIRYDACVTFSGDVKPEGEVGIQ---TIAGGRYAVFLHKGAYTGLPEIYR 249 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + T R E Y + +P NLR E+ +P+ Sbjct: 250 NIFAGWLATSGCTLRDQPCFEVYLNRD--PRRTKPENLRTEIWVPV 293 >UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mirabilis RepID=C2LM40_PROMI Length = 298 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 166/299 (55%), Gaps = 14/299 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +++D+++W+E +LD LSLD +A K+GY+KWH QR+FK TG ++G Y+ ARRLS Sbjct: 1 MLQENVVKDIIVWIEQNLDSRLSLDIIAEKSGYTKWHFQRLFKAYTGISLGKYVLARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 A ALR+T +LDI+L+Y FDSQQTF RAFKKQF TP+ YR+ W + P Sbjct: 61 CGAYALRITRSSLLDISLKYHFDSQQTFCRAFKKQFNITPSEYRKKQGWDISELIFPALE 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +++ +TL LIG+ Y+ ++ + + + R +FW FL TIP +Y Sbjct: 121 TVELKAKYEVMTLPSKELIGMAHQYNKNISAWNYDKKKFRKEFWKKFLKEIHTIPTEMYA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQ--ADGYVLTGHPVMLQGGEYVMFTYEG-----LG 233 + R S D+ YTTA++++Q + + T V L G+Y++ T+E Sbjct: 181 TH--RASAGSLDDTTYIYTTAVSKEQLTSSANISTMSNVELPNGKYLVITFEMDNILDSL 238 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE----DAKAGDRPINL-RCELLIPI 287 TG + I TVY +P +NL RR G DIERY + D G +L IP+ Sbjct: 239 TGYDDIIYTVYTKVLPKMNLLRRAGPDIERYTLKQSVSYDKLIGHSEQHLQEISYYIPV 297 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 126/298 (42%), Gaps = 15/298 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++E HL +P+SL+ VAA A YS +H R+FK G + YI+ RRL+ Sbjct: 1 MSYIQSVQRAIDYIETHLHEPISLEKVAAHASYSYFHFHRLFKATVGCTMSEYIKRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A AL T I+DIA +Y ++SQ+ FTRAFK+ F P YR++ I P + Sbjct: 61 KAAYALLETKASIIDIAFEYGYESQEAFTRAFKQWFNVLPGKYRQARPPVQL-IDPYWAV 119 Query: 121 GEFTMP-----EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEM---RYQFWHDFLGNAP 172 F + + VT + ++G+ SL SD WH Sbjct: 120 KTFPVNATGDHKPYIVTRQPLQVVGLQLE-GLSLPGGSDREQTTQVAIPSLWHQLEARIH 178 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGH-PVMLQGGEYVMFTYEG 231 I + S D Y + + D + G ++GG Y F Y+G Sbjct: 179 EIERRVDPFVSYGISSPSRDGSHFTYMACVEIEAGDVNIPQGFIQKEIKGGTYASFHYKG 238 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + +YG+ +P G +IE Y D + + E+ PI++ Sbjct: 239 AANQLSALTNYIYGSWLPSSQYQSHFGVEIEVY----DEREPKEDGEVAVEIWTPIKK 292 >UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salmonella enterica RepID=B5RA11_SALG2 Length = 285 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 83/287 (28%), Positives = 139/287 (48%), Gaps = 4/287 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + II +L +E +L++ + ++ + GYS+ LQ FK+ G +IG YIR R+LS Sbjct: 2 MMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLS 61 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +SA L+LT++ + DIA + FDS Q+++R KK F P YR++ W +RPP L Sbjct: 62 RSATLLKLTSQSVTDIAFRMGFDSVQSYSRELKKTFGVNPNNYRKADFWDLRNLRPPYWL 121 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + L + G S+ + + ++++ H+ L T +Y Sbjct: 122 DCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLR---TWGENVYC 178 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ +P KD V + + DG + V ++ G+Y F + G Q+F Sbjct: 179 LSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRV-IKCGKYAKFHFVGHKEQYQQFS 237 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 T+Y +P LNL RR+G+DIE ++ A K + IP+ Sbjct: 238 NTIYMCILPKLNLIRREGEDIEYFHLASVQKQQSNESIVDLYYYIPV 284 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 16/288 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L ++ +LD LSLD +A A S++H R+F+ + G + IR RL+++ Sbjct: 10 YEKRMLRVLEYIYNNLDGDLSLDALADVACMSRFHWHRVFQSMRGETLATSIRRIRLNRA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L + +PI +IA QY + S Q+F+RAFK ++ P +R S + P L + Sbjct: 70 ALDLIQSKQPITEIAEQYGYPSAQSFSRAFKGEYGMAPGQFRESKYAA-----PTLETEK 124 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI--PPVLYG 180 ++ V +++ P +S + S F + + L + I + G Sbjct: 125 ESIFSMHPVEIKEVP----ERSLQALFHRGSYFEMGVVFSKLAAMLSSRGVIRKCGPIVG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + PS DE + Q+ A+ L P+++ GG + ++G G++ Sbjct: 181 IYYDDPSLVPLDELRSHVGAVVPQNFANTEGL--EPLVIPGGRCAVLKHKGPYAGLRGAF 238 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG +P E + ++ P +L E+ +P++ Sbjct: 239 HYLYGVWLPTSGEEAADQPCYEVFL---NSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 12/287 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D A + +L ++ HLD P+ L ++A A +S +H R+F + G ++ ++IR RL + Sbjct: 11 DHAERMDRVLEHIQAHLDDPMQLLDLADIACFSPYHFHRIFSGMIGESVKSHIRRLRLER 70 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A+ L+L P+ DIA Q F++ ++FTRAF F +P +R++ + + Sbjct: 71 AAITLKLGEAPVTDIAFQAGFETHESFTRAFNAMFGLSPQRFRQAHHGT-LDHKHCNYWK 129 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 E M E V LE+ ++ V ++ + + + W G +L L Sbjct: 130 EIVM-EASVVNLEEMNVVFV--RHTGPYKDCNHAWSTLCG--WAGPRGLVNADARIL-AL 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P +D+ +A + G + GG Y ++G + + + Sbjct: 184 CHDDPDVTPEDKIRYDACITVAGQT-EVQAPIGMK-TIAGGRYAKTLHKGPYSDLHKTYA 241 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + G P G IE Y D P LR E+ +P++ Sbjct: 242 QLCGQWAPQNGCEADAGASIEIYLNTPDK---TAPEELRTEVYVPLK 285 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 126/302 (41%), Gaps = 23/302 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L ++E +L + ++L+ +A A +S +H R+F+ + G ++ YIR RRL+ Sbjct: 1 MDYVVCIQRTLDYIEENLQEQMTLEQLAKIACFSPFHYHRVFQAIVGESVMDYIRKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA-----FGIR 115 +A L T ++ IA++ F Q++F RAFKK + +P YR + S + Sbjct: 61 CAAERLFYTDEKVITIAIEVGFQYQESFNRAFKKIYGVSPRQYRNAKRISGPLRGKACLD 120 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN--APT 173 L LG M E KFVT +IG Y + ++ +FW +L N T Sbjct: 121 KKLWLGGHKM-EPKFVTKPAFHIIG----YELKTKNADGQNNKDIPEFWQHYLKNKLGCT 175 Query: 174 IPPVLYGLNETRPSQDKDDE-QEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY--- 229 IP L+ E + + E E Y + ++ EY +FT Sbjct: 176 IPNPLHKHVELGICTEFNPETGEFVYVIGMEVEKGTKAPEGMVYKSFPELEYAVFTTPKA 235 Query: 230 --EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 E + +Q ++ P + + E Y N+ ++ IP+ Sbjct: 236 NEESFTSSIQSTWNYIFTEWFPQSDYEHNGVVEFELYDERC-----HGTENIEMDIYIPV 290 Query: 288 RR 289 ++ Sbjct: 291 KK 292 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 119/293 (40%), Gaps = 17/293 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++++ HLD P++L+ +A A +S +H R+F +TG + YIR L ++ Sbjct: 8 YEERIIRVQMFIQDHLDDPMTLEELAKVACFSPFHFHRIFTAMTGEPLKEYIRRLLLERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-------RSPEWSAFGIR 115 A LR +++P++ +AL + + + FTRAF+ F P YR R+ S Sbjct: 68 AHELRYSSQPVVQVALNAGYQTHEAFTRAFRNMFGVPPRQYRTELPSRARNKAGSPQVFN 127 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + + + + ++ + ++ E+ ++ H + Sbjct: 128 LRILKPKGDAMDIRIEEFPPLDVVFI--RHTGPYEECGIAWEKLCS---HPDVAKELGPE 182 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ P + D+ + + + ++GGEY + T+ G G Sbjct: 183 TQAIGICYDDPDITEADKIRMD--VCVTAPPSLSPPEGMEKQTIKGGEYAVLTHHGPYEG 240 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + ++G +P +E Y + + A P +L E+ +P++ Sbjct: 241 LHDCYRWLFGEWLPSSGREANYAPSLEVYVNSPEEVA---PQDLITEIRVPLK 290 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 114/288 (39%), Gaps = 13/288 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L + HLD+PL +D +A A S +H R+++ + G + +R RL ++ Sbjct: 36 YETRLGRVLDHIYDHLDEPLDIDRLAEIACLSPYHWHRIYQAMYGETVATTVRRLRLHRA 95 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L + PI++IA + + S Q+F+R F+ F PA YR+ S F RP L G+ Sbjct: 96 AGYLANGSMPIVEIAERSGYSSLQSFSRTFRAVFGVPPAQYRKQGTHSRF--RPALS-GD 152 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQIS-DFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 M + V P+ ++ + QI F + H+ L + G+ Sbjct: 153 DQMTMREVVIRHVEPIEVLSVDHVGPYMQIGKAFDALFGWLAKHNLLAGQ----MRMVGV 208 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYV--LTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 P + E L ++GGEY + + G + ++ Sbjct: 209 YYDDPGVVAESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAA 268 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +YGT + E Y ++ P +L E+ +P+ Sbjct: 269 YEWLYGTWLVQSGREAADAPVFEEYL---NSPKDTAPADLVTEICLPL 313 >UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=Dickeya RepID=C6C946_DICDC Length = 313 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 10/287 (3%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I DL+ W+E HL+ PL + +V AK+GYSKWHLQRMFK TG ++G YIR RRLS++AV L Sbjct: 12 IADLVGWIESHLESPLMISDVTAKSGYSKWHLQRMFKKETGISLGTYIRNRRLSQAAVEL 71 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 +LT++ I ++AL+Y FDSQQ+FTR FKK F +P YR+ W ++P LRL +P Sbjct: 72 KLTSQTIQEVALRYCFDSQQSFTRTFKKHFGTSPGHYRKQSSWDFSSLQPSLRLNVNAVP 131 Query: 127 EHKFVTLEDTPLIGVTQSYS---CSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 + V L P Y+ L Q++D R W G + +Y + Sbjct: 132 VPEVVALPRLPANRCHFEYTQVVDDLVQVNDIAR--RPVLWEKACGRSHAADVSIYVSST 189 Query: 184 TRPSQDKDDEQ-EVFYTTALAQDQADGYVLTGHPVMLQGGE---YVMFTYEGLGTGVQEF 239 P ++ Q V Y + A+ + + QG + Y+ F + G Q F Sbjct: 190 VYPDDNRIKRQVRVNYDVGVITH-AEELLADDDGIGEQGTDVDSYLRFRFIGNLQEYQTF 248 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 + +Y +P T+ D+E + IP Sbjct: 249 LRAIYHHILPGRPYTKMGNNDVEIVRCRRKPDGAIDTSQFEVDYFIP 295 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 226 bits (576), Expect = 8e-58, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 125/287 (43%), Gaps = 14/287 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + +L ++ +LD LSLD +A A S++H R+F VTG + +IR RL + Sbjct: 4 DYEKRLLRVLDYVYDNLDGDLSLDTLADVAALSRFHFHRVFTAVTGEPVAHFIRRVRLHR 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + L + P+ ++A + +D+ ++F+R+F+ F +TP+ +R + PPLRLG Sbjct: 64 AGLELLSSDAPVAEVAAKMGYDNARSFSRSFRDAFGRTPSEFRAHAQ-----PVPPLRLG 118 Query: 122 EFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + V +ED P + + QI + + LG P + +L G Sbjct: 119 TSGETQMYDVKIEDQPARRLGVIDHRGPYIQIGEAFEKAGSTVMARGLG--PHLGAML-G 175 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P ++ D+A V L+GG++ + T+ G TG+ + Sbjct: 176 IYFDDPENGAAEDLRS--AAGFEMDEAAEITPPLREVRLEGGKHAILTHTGPYTGLAQAY 233 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++G + R+ E Y + P +L + +P+ Sbjct: 234 KYLFGEWLATAGEMPREAPPFELYV---NTPMNTAPDDLVTLIGVPL 277 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 121/291 (41%), Gaps = 19/291 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + L ++E H + L+LD +A S++HL R F+ TG ++ Y+R RRLS++ Sbjct: 4 HMNPVGKALWFIESHFARELTLDEIANCGCVSRFHLARAFEAATGFSVMRYVRGRRLSEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L A IL +A+ + S + FTRAF++QF TP R + P+++ E Sbjct: 64 ARRLASGAPDILAVAIDAGYGSHEAFTRAFREQFGLTPDALRARGHLDNLALVEPIKMDE 123 Query: 123 FTMPEHKFVTLED---TPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAP-TIPPV 177 + + ED + G+ + Y+ I ++Q + D+ G P + V Sbjct: 124 TLLTRLEPPRFEDGKAFLVAGLNERYTNETCAAIPS-----QWQRFGDYFGKVPGQVGNV 178 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 YG+ + DD + Y + + + Y +F++ + ++ Sbjct: 179 AYGV-----CYNADDNGNIDYLCGVEVSDFSALPAELSRLRISPQRYAVFSHREHVSTIR 233 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 T++ +P + ERY D +G E+ +P++ Sbjct: 234 RTWNTIWNQWLPASGHIPADAPNFERYDAKFDPVSGMGG----LEIWLPLK 280 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 15/287 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I +L ++ + LSLD +A A S++H R+F+ +TG G +R RL ++ Sbjct: 5 YEDRILRVLRYIHDNPAGDLSLDRLADVAAMSRFHWHRVFRALTGETCGQSVRRIRLHRA 64 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 AVAL + I +IA + S+ +F+RAF + P +R PPL L + Sbjct: 65 AVALAHSDASIEEIAATVGYPSRHSFSRAFTAAYGDAPGAFRAKGLHL-----PPLALRD 119 Query: 123 FTMPEHKFVTLEDTPLIG-VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 VTL D P VT + +I R + + P + PVL G+ Sbjct: 120 PKELSMHNVTLRDEPARHLVTVPHRGPYAEIG--RAFEHFSALANSRNLWPQLGPVL-GV 176 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P + +D+ + A A+ + DG P L GG+ + T++G G+ Sbjct: 177 YLDAPGEMPEDQLRSY---AGAEYRGDGTPEGLEPFALPGGKAAVLTFKGPYAGLAAAYD 233 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +++G +P T E Y + P L E+++P+R Sbjct: 234 SLFGGWLPQSGETPADQPCYEIYL---NDPRATAPEELLTEIVLPLR 277 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 8/287 (2%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ +++ +L + + L +A A S +H R+FK V +G Y++ RL ++ Sbjct: 50 YLKPVNQVVDYIQSNLQEKIELTTLANLANISHFHFHRIFKSVMNENVGEYVQRVRLERA 109 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L+ T + +IA Q + +Q ++AFKK F +P+ YR P + P+R E Sbjct: 110 AFKLQTTNLNLTEIAEQVGYQTQFALSKAFKKYFNISPSTYRSMPT----DLTIPVRREE 165 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + P+ V + + I F + G P + + Sbjct: 166 CGISDIRQDIRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFS 225 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P+ EQ+ + D + + G ++GGEY +FT G + + Sbjct: 226 RDVPTIITSPEQQRIFVCVNNSDHLEPSGIIGVQ-TIEGGEYAVFTMYGAYRQLPDVYTY 284 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y + + R E+Y + D D+ L E+ IP+ + Sbjct: 285 IYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDK---LMTEIYIPVSK 328 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 13/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E +L+Q L ++VA GYS +H R+F+ + G IG YIR R+++ Sbjct: 1 MDYIKSLEKAIMYIEENLNQDLKTEDVAKSIGYSYYHFTRLFEGLLGETIGNYIRKRKIT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L T + I+DIAL ++F S + F RAFKK + +P YR++ G + + Sbjct: 61 KTAQDLIYTDKRIIDIALDFQFKSPEAFARAFKKIYDISPTEYRKNRIDVLKGNKKYI-- 118 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYS-CSLEQISDFRHEMRYQFWHDFLGNAPTI----- 174 + +H + P+I V ++ + ++ + W F N+ I Sbjct: 119 -DNERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNKNSSKIVNKAE 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV-MLQGGEYVMFTYEGLG 233 P YG+ E ++ E + + + Y+ G ++ G+YV+FT++G Sbjct: 178 PLKYYGICENDRPTNQFGENVAYSEIVGIEVTSFDYIPEGMVAKVIPQGKYVVFTHKGSI 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +QE ++GT +P + D E Y ++ G ++ IPI+ Sbjct: 238 HKLQETYEYIWGTWIPFSKVELDMRDDFELY---DEGFKGANNHLSEIDIYIPIK 289 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 118/288 (40%), Gaps = 12/288 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + + ++ HLD PL L+ +A A S +H QR+++ + G +I +R R+ ++ Sbjct: 16 YAASVARVHAYISAHLDGPLDLNRLAEVACLSPYHWQRVYRALYGESIVLTVRRMRIVRA 75 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + L TARP+ +IA + + S F RAF+ + PA +RR+ PL+ GE Sbjct: 76 SEDLVCTARPLDEIARRAGYGSTHAFARAFRDAYGVLPAQHRRTGTHRPIY---PLQRGE 132 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPTIPPVLYGL 181 M +H+ L G +++ + ++ D F + H +G + G+ Sbjct: 133 ADMFKHEVEIRRLPALRGYAVTHTGAYMKVGDAFERIGAWVGQHGLIGPGAKM----IGI 188 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 P + + A D V V + GGEY + + G ++ Sbjct: 189 FYDDPDTTPEAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAY 248 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG + E Y + P +LR E+ +P+R Sbjct: 249 QWLYGDWLRHSGREAADAPPFELYL---NTPMDTAPADLRTEIHLPLR 293 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 128/286 (44%), Gaps = 17/286 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + L +E LD L L+ +A+ +G S++ L R+F TG ++ Y++ARRLS +A L Sbjct: 4 VNKALWLIETELDTALDLERLASVSGLSRFTLSRVFAGATGWSVMRYVKARRLSCAAHRL 63 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL---GEF 123 A IL++AL + S + FTRAF+ F TP R S + + +R LR+ + Sbjct: 64 AKGAPDILEVALAVGYGSHEAFTRAFRDHFGITPETLRASGDLNGIELREALRMHATTGY 123 Query: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP-TIPPVLYGLN 182 + +FV E+ ++G+++ ++ Q +Q + ++G P +G+ Sbjct: 124 ALSAPRFVDAEELLIVGLSERFNVETAQ----GIAALWQRFGPYIGRIPGQQGSETFGV- 178 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + +D+ Y + ++A L Y +F +EG + + E Sbjct: 179 ----CCNPEDDGSFEYIAGVLVNRAAEVPAGLTLQRLAAHRYAVFLHEGHISSIHETFNA 234 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ +P + + ERY D AG R E+ +P+R Sbjct: 235 IFQHWLPTAGVQTAAAPEFERYSEDFDPMAGTG----RVEIWVPLR 276 >UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GJ26_SERP5 Length = 288 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 153/288 (53%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q IR+LL+W+E +L PLSLD V+AK+GYSKW+LQRMFK TG ++ +YIRARRL + Sbjct: 4 QENHIRELLVWIEDNLTNPLSLDIVSAKSGYSKWYLQRMFKTQTGLSLASYIRARRLYLA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-- 120 A ALR T + ILDI+++Y+FD+QQTF+R FKK FA++P++YR + + + L Sbjct: 64 AFALRFTQKTILDISIEYQFDNQQTFSRCFKKHFAESPSVYRHARKQDFSHLVRSLSANH 123 Query: 121 -GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 G+ + K V + G + +Y + + +R + F + + P + Y Sbjct: 124 PGDIQVDRIK-VAKGQYAIKGKSYAYHLDIADLDKSHLHIRSKIREQFYQSVASRPALTY 182 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 L + P ++ V Y +A+D V P G+Y F Y G + + Sbjct: 183 ALTQFIPDG---EQVRVEYALGVAEDCPTSDVAGLEPWPEIHGDYCRFCYSGKPVALHDH 239 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ +Y +P L L RR G D+ + + + + + L + L+P+ Sbjct: 240 VVQIYTQALPELGLARRVGPDLTMFNYSLNER---EELQLELQHLVPV 284 >UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ1_SODGM Length = 201 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 120/191 (62%), Positives = 146/191 (76%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGII+DLL WLEGHLD PL+L+ VA ++GYSKWHLQR FK TG AIGAYIRARRLS Sbjct: 1 MDQAGIIQDLLSWLEGHLDTPLTLNRVAERSGYSKWHLQRKFKLATGQAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++ +ALRLT+R + DIALQY FDSQQTFTR FKKQF QTPALYRRS +W G+ PP R Sbjct: 61 RAVLALRLTSRSVADIALQYGFDSQQTFTRPFKKQFIQTPALYRRSRKWHFLGMYPPYRF 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ +FVTL+ LIG +QSY+C+LEQ+S++R +R FW FL PT PPVLYG Sbjct: 121 DSRPLPQAEFVTLQVMTLIGTSQSYTCTLEQLSEYRTNLRSHFWRQFLAAMPTKPPVLYG 180 Query: 181 LNETRPSQDKD 191 L+ R S+ + Sbjct: 181 LSPHRRSRHEK 191 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 223 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 126/300 (42%), Gaps = 22/300 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ H+ +PLSLD++A ++ +S+W LQR+F+ TG A+ Y+R +LS++A Sbjct: 15 SRISKVLSFIHQHISEPLSLDDIARQSCWSRWQLQRVFQTETGMAVATYVRELKLSQAAE 74 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 L T+ ++DIAL+ F S+ +F+R+FK+ F +P YR+ + G+R P+++ + T Sbjct: 75 RLIDTSDRVIDIALELGFSSEISFSRSFKQVFGLSPRAYRKQGLRT--GLRKPIQVSQRT 132 Query: 125 -------MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 E + + + L G+ + DF+ ++ WH P P Sbjct: 133 AEEACPLFVEVRVESKNEFFLKGLHGEINGLFALNPDFQQKV-PALWHRLEQTLPDEPER 191 Query: 178 LYGLNET-RPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFTY 229 L +Q D + Y + +++ Y + + Sbjct: 192 PVALTGVIDITQSHFDGSNMEYWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKH 251 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + + + +P G ++E Y A + E IP+ R Sbjct: 252 CGPVVHLPKTLEWFLLNWLPNSGYRGIDGYELECY----PANYNQHDTDAVMEYWIPVER 307 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 223 bits (568), Expect = 7e-57, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 125/293 (42%), Gaps = 24/293 (8%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + + ++E HLD+ + L +V+ + GYS +H+ R+F V G +G YI RRL ++A L Sbjct: 14 LERAIEYIETHLDENIDLGDVSREMGYSYYHMTRLFSAVLGEPVGRYISRRRLYRAAQQL 73 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR--------SPEWSAFGIRPPL 118 + R I+DIAL+ F S + F+RAFK F TPA YR+ + G P + Sbjct: 74 VHSDRRIIDIALESGFQSPEAFSRAFKALFKTTPAGYRKAGLDLVATAKRQLLPGDVPHI 133 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL---GNAPTIP 175 G PE +T E+ + G+ S S +I Q W FL G+ + Sbjct: 134 AAGISHSPEILQMT-EEIKIAGLRDITSISQNRIP--------QLWDQFLRFHGDLYELT 184 Query: 176 PVLYGLNETRPSQDKDD-EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 Y + ETR + +D + T L+ G+Y +FT+ G Sbjct: 185 ETAYSICETRQTAYAEDGDVTFSVMVGSPVPDFSNLPETLAQTTLRPGKYAVFTHRGSLE 244 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +YGT +P D E Y E + +L IP+ Sbjct: 245 KLLQTYQYIYGTWLPSSGQRLDDRDDFEVY---ERKVLAMQDPENEVKLYIPV 294 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 118/288 (40%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + ++ HL+ LS++ ++ A +SK+H R F TG +G ++ +RL ++ Sbjct: 9 YINRMNRVCDYILAHLNDDLSVEKLSEVACFSKFHFHRQFSTYTGMTVGKFVLMQRLKQA 68 Query: 63 AVALRLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + L ++DIAL+ F+S + F+RAFK F QTP+ +R+SP W + + L + Sbjct: 69 SKQLAFNQPMRVIDIALEAHFESPEAFSRAFKNTFGQTPSQFRQSPNWHTWRAQYALPII 128 Query: 122 E-FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E + V + T + + E+I D + R W +P +G Sbjct: 129 ERNIVMNIDLVEFDHTLIAVLEHRGPA--EKIEDSLNIFRK--WRKTTPYSPVANHKSFG 184 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L P + + + + D + + G + +EG + + + Sbjct: 185 LVYDDPDTVEPAKFRFDLCAEVKETIPDNAQGLINKA-IPAGRCAVLRHEGSLNTIGDKV 243 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P R D ++ + +L ++ +P++ Sbjct: 244 RHLYCNWLPNSGEELR---DFPCFFHYTNLNGDTPESDLVTDIYLPLQ 288 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 117/287 (40%), Gaps = 10/287 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 G + + ++ HLD+PLSL+ ++A A S +H R F TG + YI+ RL ++ Sbjct: 10 YVGRFQRVCRYIARHLDEPLSLEALSAIAHSSPYHFHRQFSAYTGIPLYRYIQWLRLRRA 69 Query: 63 AVALRLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLRL 120 L R ++DIAL F + ++F+RAF+ F Q+P +R+ P+W+ + R P L Sbjct: 70 CWRLAFNPRDKVIDIALDAGFQNAESFSRAFRTAFDQSPTQFRQQPDWAEWHRRVPKHTL 129 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E T + ++ T + + S L + R+ W G +P +G Sbjct: 130 QEQTSMDVNIISFPTTRIAVLQHRGSPDLVNTTA----ARFIAWRKTSGLSPVATSDTWG 185 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P + +A + + + GG + + G + + Sbjct: 186 IAWDDPQTTPQEAFRFDICGTVAGPVGENAFGVING-EIPGGRCAVVRHHGSLDTLANSV 244 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P T R D Y+ + L+ ++ +P+ Sbjct: 245 WFLYRDWLPASGETLR---DFPVYFRYLNFVHEVAEHELQTDIYLPL 288 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 12/279 (4%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 ++ ++ + LSLD +A A S++H R+F +TG + +R R+ ++A L T Sbjct: 1 MIDYIYSNPSADLSLDCLADVAAMSRFHWHRVFSALTGESCAQIVRRVRMHRAAFWLVQT 60 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 P+ IA + +++ Q+FTRAF++ F P R + +R + G+ M K Sbjct: 61 EWPLAKIAREVGYNNTQSFTRAFREVFDAKPLEIRAAQAQHVLTLR--CKEGDEDMYGVK 118 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 + L ++ + +S ++ F + + + G+ PS Sbjct: 119 VEDAPERRLA--AMAHVGAYNGVSKSYEKVAAVF---TIRDLWKHARGMVGIYYDDPSTV 173 Query: 190 KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMP 249 + E + LA D V+++G E + +G TG+QE +YG +P Sbjct: 174 PEAELRSYAAVELADDVV--VPDPLEEVLIRGDESAVLVMKGAYTGLQEAYEWLYGQWLP 231 Query: 250 MLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L E Y ++ P +L ++ +P++ Sbjct: 232 QSGLMPADQPSYEIYL---NSPMDTAPADLLTQIYVPLQ 267 >UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria RepID=A6M032_CLOB8 Length = 285 Score = 220 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 17/295 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I + + ++E ++ + +++ N+A K S ++ Q+ F + G +G YIR RRL+ Sbjct: 1 MKWIEGIGEAISYIEENITEEITIKNIAEKTFMSPFYFQKGFAMLCGFTVGEYIRQRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE--WSAFGIRPPL 118 + L T I+DIAL+Y + S +FT+AF + TP R+ S ++ Sbjct: 61 LAGSDLVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVT--QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 L + ++K V + ++GV+ Y + +I F E + Sbjct: 121 LLEGGYIMDYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTE-------HYEAGKGKFVC 173 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 +YG++ + E + + + +G+V ++ + +F +G Sbjct: 174 GMYGISIDESMGSDEFEYLIADNYNPSIEIPNGFVTK----IIPKHTWAVFACKGAMPKS 229 Query: 236 VQEFILTVYGTCMPML-NLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q+ ++ +P + G +IE Y D G++ N E+ IP+++ Sbjct: 230 LQDMNRKIFSEWLPNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPVKK 284 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 57/294 (19%), Positives = 123/294 (41%), Gaps = 17/294 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + L ++ VA A S +H QRM+ +TG I Y+R RRL+ Sbjct: 1 MDWLDSMNKAVEYIEDNITEKLDIEKVAKIALSSPFHFQRMYHVITGVTIVEYVRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP--L 118 +A + + I+++A +Y +++ + FT+AF++ + +P+ R + + Sbjct: 61 LAAQDII-SGEKIINVAYKYGYETPEAFTKAFRRMYGMSPSAAREPEANLKAYPKLSFHI 119 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL--GNAPTIPP 176 + +K V E ++G + + E +FW++ + G+ I Sbjct: 120 SIKGDKDMNYKIVEKESFRVVGKQTRITM----VDGENFEQVPEFWNNCMKDGSYNWICS 175 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 + L +D + E Y + + + D + + +F G Sbjct: 176 KVGKLGVLGICKDF-GKDEFNYMIGVEEIK-DSIPKGYVSATIPAATWAIFESSGALPDA 233 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q+ ++ +P ++E Y P D + + +CE+ IPI++ Sbjct: 234 IQDLTRRIFTEWLPSTGYEHACAPELEIY-PEGDIYSS----DYKCEIWIPIKK 282 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 19/292 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q I +L ++ +LD PL L +A ++ +S+W LQR+F TG + Y+R +LS++ Sbjct: 43 QLTRIERVLDYIHANLDLPLGLAELAEQSCWSRWQLQRVFLHETGLTVAHYVRELKLSQA 102 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A AL + +LD+AL Y F S+ +F+RAFK+QF +P YR+ G+R PL Sbjct: 103 AEALLSGRQRVLDLALCYGFGSEVSFSRAFKQQFGCSPLAYRKRG--LRLGLRTPLVRAA 160 Query: 123 FTMP------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP- 175 P + + + L GV DF+ + W P Sbjct: 161 LPQPMPARLVQVRIESPPGFILQGVKGQIRGLFAAAPDFQQTV-PAIWRALRTAGGLPPG 219 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ + + + Y ++ + + Y + ++ G + Sbjct: 220 QERVGVVDVSGAGESLP-----YWAGSVMEEGASLPAGLARLPVPAQTYAVLSHVGPVSQ 274 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + +P G ++ERY P D + R E +P+ Sbjct: 275 LGQTLNWFIQHWLPSSGYRGLDGFELERYAPDFDG----NQPDARMEYWLPV 322 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 24/292 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I ++ ++ LSLD +A A S++H R+F + G + IR+ R+ Sbjct: 1 MD---RILRVIDYIHTQAADDLSLDQLADVAAMSRFHWHRVFTAIMGASPAQIIRSVRMH 57 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP-PLR 119 K+ + L T PI IA + + ++F+R FK + QTP +R + G+ P P Sbjct: 58 KATMLLLRTDLPIAQIAAHVGYSNDRSFSRTFKDIYGQTPTAFRNAG---FPGMAPHPNP 114 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ---FWHDFLGNAPTIPP 176 G + + T D L ++ + ++ + W G + Sbjct: 115 QGVSNVFDVDIQTTSDKRLAALSHRGDYAEGSVAYQKVATIISTGNHWPQTRG----MAG 170 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 V Y E P++D V + D V L GG Y + ++G G+ Sbjct: 171 VYYDNPEVTPTEDLRSHAGVLWEGGAIPD-------GLEEVQLTGGRYAVLHFKGPYAGL 223 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 E VYG + + R E Y + P +L ++ +P+ Sbjct: 224 AEAYRYVYGPWLSSSQESLRDAPSFEHYL---NDPTNTAPADLLTDIYMPLE 272 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 126/286 (44%), Gaps = 13/286 (4%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 D + ++E HLD L LD +AA A S++H QRMF+ +TG+A+ YIR RR++ +A L Sbjct: 3 DSIEYIENHLDNELLLDEIAAVACMSRFHFQRMFRMLTGYAVSEYIRNRRITVAAQELVH 62 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PLRLGEFTMP 126 + ++D+A++Y ++S ++FT+AF++ +P+ ++ + + ++L Sbjct: 63 SKSKVIDVAMKYGYESPESFTKAFRRIHGISPSDAKKHSQSLKAYPKISFQIQLKGDVEM 122 Query: 127 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN--APTIPPVLYGLNET 184 ++K V + ++G + + I + FW++ N + + L Sbjct: 123 DYKIVEKDAFTVVGKSIRTTT----IGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLL 178 Query: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFILTV 243 D D +QE A+ +D + + + +F G + + + Sbjct: 179 GICIDFDKQQENLTYLIAAEKNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVWERI 238 Query: 244 YGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + P G ++E Y D + + E+ +P+++ Sbjct: 239 FSEWFPATGYEHSGGPEMEVYVSDADPYS----KDYYSEIWVPVKK 280 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 23/301 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ HLD PLSLD +AA++ +S+W LQR+F+ TG + Y+R +LS +A Sbjct: 12 NRISKVLGFIHRHLDTPLSLDEIAAQSCWSRWQLQRVFQAETGLTVANYVRQLKLSLAAE 71 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF- 123 L T + ++DIAL F+S+ F+RAFK+ FA +P +YR++ + + G++ P+ + E Sbjct: 72 LLLDTDQRVIDIALATGFNSEIAFSRAFKQFFACSPRVYRKAGQRT--GLKKPIEISEVQ 129 Query: 124 -------TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP- 175 + E + T L G+ + +F ++ + W A + Sbjct: 130 INGEREQSFVEVRVETKPAFILKGMRGEITGLFSLDPNF-ADVVPKLWQRLDAEANSTSL 188 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFT 228 + L ++ D +FY + + + Y Sbjct: 189 SFGHCLGVVDVTKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVK 248 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++G + + + +P G ++E Y D D + E +PI Sbjct: 249 HKGPIDRLPQTLEWFILHWLPTSGYRGVDGYELEVY---PDDYQADA-AHAEMEYWVPIV 304 Query: 289 R 289 R Sbjct: 305 R 305 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 18/288 (6%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 + ++E HL +S+ +AA + YS +H R+FK + G Y+R RRL+ +A L Sbjct: 6 KSIEYIEQHLYDKISVHQIAAASHYSTYHYSRVFKALVGDTPKEYLRKRRLTMAAKRLLT 65 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM--- 125 ILD+A+ +FDSQ+ FTRAFK F TPA YR+ E + + + + Sbjct: 66 EEVGILDLAMDCQFDSQEAFTRAFKALFNMTPAQYRKMNEPFRLLYKNQINEDDLSFLQN 125 Query: 126 ---PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 E + +T L+G+ Y+ E +S R + + D + N + +G+ Sbjct: 126 RISMEPEIITQPAIKLVGIANQYTD--EDLSLPRLWSGFAPYRDTIAN--RVGDEFFGIY 181 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM-LQGGEYVMFTYEGLGTGVQEFIL 241 E S ++ +E F A+ + V G + Y FT++G ++E + Sbjct: 182 E---SYEEAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLR 238 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 ++G+ +P + D E Y A D + L IP+R+ Sbjct: 239 YIWGSWLPKSAYEYEEKPDFELY----PAGFNDADPENKLYLNIPVRK 282 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 26/298 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E ++ + + L+ V+ A S +H QRMF + + YIR RR+S Sbjct: 7 MEWIERLNSAVNYIEKNIRETIDLEEVSKIACCSTYHFQRMFAYIADIPLSEYIRRRRMS 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +AV L+ ++DI+L+Y +DS F RAFK P+ R E + PP+ Sbjct: 67 LAAVDLQSGNEKVIDISLKYGYDSPTAFNRAFKSVHGIAPS--RAKEEGTILKAFPPISF 124 Query: 121 GEF----TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWH--DFLGNAPTI 174 ++ + ++G+++ +E+ E + W G P + Sbjct: 125 KITIRGDIEMNYRIEKKDSFRIVGISEPLETEMEK----NFETVPKMWGTAAMNGTIPRL 180 Query: 175 PPVLYGLNE---TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 ++ G+ S + D + A +Q +G ++ + +F+ +G Sbjct: 181 AAMMDGIPMGLLGVSSCNNLDNWRYYIAVASSQPIENG----LEEYIVPSSLWAIFSGKG 236 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE + +P DIE Y A+ P + E+ IP+ + Sbjct: 237 TAKSMQELEKRIITEWLPTSGYEYGNAPDIEVYLKAD-------PEDTEYEVWIPVLK 287 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 121/286 (42%), Gaps = 15/286 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I + ++E H + +SLD++AA AG S++HL R+F G +I AYIR RRLS +A+ L Sbjct: 4 IARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAALDL 63 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 IL++AL+ + S + FTRAF++QF TP R+ + P+R+ + Sbjct: 64 ANGTSGILEVALEAGYGSHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTRTL 123 Query: 127 EHKFVTLEDTP---LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 + + E++P L G+ ++Y + R E W F IP Sbjct: 124 KIEPPRFEESPGLLLAGLAETYDYN-------RTEGIPSLWQRFSAYFGNIPGQRGNTAY 176 Query: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 +Q + Y A + + L Y +F + G + + + Sbjct: 177 GVCTQSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHI 236 Query: 244 YGTCMPMLNLTRRKGQDI-ERYYPAEDAKAGDRPINLRCELLIPIR 288 + T P + D+ ERY D + E+ +P++ Sbjct: 237 FKTWFPESGYRHGEMPDLMERY----DERFDPHSGMGAVEMWVPLK 278 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 19/298 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ + ++E +L +S+ +++K+ +S +H QR+F+ +TG ++ YIR RRLS Sbjct: 1 MDYYERIQHSIEFIEENLQNNISIKEISSKSCFSAFHFQRLFQAITGFSVQEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-----SPEWSAFGIR 115 ++A L+ T + +L IA+ +++ SQ+ FTRAF + F TP +R+ + + Sbjct: 61 EAARLLKETKQNVLHIAIAFQYGSQEAFTRAFVQFFGVTPGRFRKEGVMLKKQNKMDFLA 120 Query: 116 PPLRLG-EFTMPEHKFVTLEDTPLIGVTQSYS----CSLEQISDFRHEMRYQFWHDFLGN 170 +L E M + L + +IG + I F + + ++ + Sbjct: 121 YQSKLDSELNMNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYMDFGKKEYYQQIQK 180 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 P + YG++ + +DD F +D +++ G+Y F Sbjct: 181 -KIAPHMAYGIS----TSFQDDGHFSFVVGEEVEDFDLELNEGFVKIVIPEGKYAEFKVS 235 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G VQ +YG+ +P N R G D E D + P +++ ++ IPI+ Sbjct: 236 GSHEMVQNTRRYIYGSWLPNSNYERTSGPDFEI----TDVLHSNGPNDIKMKIYIPIK 289 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 8/293 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II +I++E +L +PL++++VA+ YS +H R F+ V G IG+YIR+RRL+ Sbjct: 1 MKDKQIIGRAIIFIETNLYEPLTVESVASAVSYSYYHFHRYFQVVMGETIGSYIRSRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L + + ILDIA+ F+S ++FTRAFKK++ TP YR + G P+++ Sbjct: 61 QAAYNLVHSKKRILDIAILLYFESAESFTRAFKKRYGITPMEYRENGIDVLIGNHNPMQI 120 Query: 121 GEFTM-----PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + T + + VT + ++G S + ++ Q + Sbjct: 121 DKITESNYANLQPEIVTFQPKCVVGFRYYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNR 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 +Y + T + E + + + GG+Y F ++G Sbjct: 181 YSIYETSGTCLQNTFNKNSETTLFIGIETSDDNNIPEGMELKEISGGKYAKFVHKGTVKN 240 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++G P + D+E Y + G + E+ PI+ Sbjct: 241 LISTYHYIWGVWFPNSSFQLDDRDDLECY---TEKFLGAEDEESQIEIYFPIQ 290 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 14/290 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +L +++ HL+ LS++ ++ A +S +H R F G + Y++ RL ++ Sbjct: 10 YMKRFETVLAYIDSHLEGDLSVNALSRIANFSAFHFHRQFTAYMGVPVSRYVQLMRLRRA 69 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPLR 119 A L + A PIL+ A F+S + F RAFK+ F P+++ ++P W A+ P R Sbjct: 70 AHQLVASPAMPILEAAFGAGFESPEAFARAFKRAFGMAPSVFAKAPNWQAWSAVFNVPQR 129 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 TM + + V +T + + L R++ W G +P + Sbjct: 130 SRSITM-QIRIVNFAETHVAALEHQGPPGLV----SESVARFRQWRMHSGQSPVASSRTF 184 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTG-HPVMLQGGEYVMFTYEGLGTGVQE 238 G+ P + D+A G H ++ G + + G + E Sbjct: 185 GIPYDNPDTTPA--HAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGE 242 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 I +Y +P N R Y + ++ +P++ Sbjct: 243 TIYPLYRDWLPSSNEELRDHPLFFHYLSVYPETPL---EQWQTDIYVPLK 289 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 13/288 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ ++ HL + + L ++A + +S ++ R+ K G IG +I R Sbjct: 10 EYQKCVNVVVEYINQHLGEDIDLKSLARISNFSPFYFHRIMKAFLGEPIGTFIVRTRTEA 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A LR + PI DIA + + S + ++ F++ + +P YR + F I P + Sbjct: 70 AARLLRYSDIPIADIAYRIGYSSPSSLSKVFRQFYGISPLEYRNNK---NFVIMKPAIIR 126 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + + ++ +I + S L + +QF + P + Sbjct: 127 PDLELKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRL-WQFIKE--QKLPMGDFSPLCI 183 Query: 182 NETRPSQDKDDEQEVFYTTAL-AQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 P ++ + Q G V L G Y +F Y+G +Q Sbjct: 184 YHDDPKVTPAEKLRTDVCMVMPVQVAPKGDVGF---KTLPAGRYAIFLYKGTYDNLQAVY 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 T+YG C+P + T R ERY + P L E+ IP+ Sbjct: 241 DTIYGKCLPEMECTLRDEPSAERYL---NNPCETAPEELLTEIYIPVE 285 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 19/291 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E HL + + D++A A YS +H QR F +TG + Y+R RRLS Sbjct: 1 MDWVRSLNYAIDYIEVHLSENIVCDDIAQSAFYSSFHFQRTFSLLTGMTVSEYVRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L ++D+AL+Y +D+ ++F +AF++ P+ ++ R L+ Sbjct: 61 LAAQELLNYDSKVIDVALKYGYDTPESFAKAFRRFHGVLPSQAKKHGTELKAFNRLTLKI 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-PTIPPV 177 L ++ ++K + ++ T+ ++ IS FW ++ + Sbjct: 121 VLEGGSVMDYKIEKKDSFRVVTKTRKFTEENRIIS------IPMFWSEYCEDGLHQKVCG 174 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGV 236 ++G+ K+ E Y + + + + +F G + Sbjct: 175 MFGICLPGEPDCKEFE----YGIGCEEKYVKQIPEGFITIDIPSYTWAVFKCVGAMPDSI 230 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 Q +Y +P G DIE Y + + E+ IP+ Sbjct: 231 QNMWRRIYSEWLPQSKYELIPGYDIELYTE-----GDIKSEDYISEIWIPV 276 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 20/297 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + + ++E HL++ + L+ V+ + GYS +++ R+F V G ++G YI RRL Sbjct: 1 MKRYPPLERAITYIEAHLNEYIGLNEVSRETGYSYYYMTRLFSSVLGESVGHYINRRRLY 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS------PEWSAFGI 114 ++ L + + ++DIAL ++S + F+RAFK F +P YR++ Sbjct: 61 NASEKLIHSDQKVIDIALDCGYESSEAFSRAFKAVFGYSPVAYRKAGLDLVIKAKKELAP 120 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT- 173 + K + L +T + G+ + S S Q+ W F G Sbjct: 121 EDVCHIANHISHAPKIILLGETEVAGLRGTTSLSDNQLPG--------LWEQFHGLNKDF 172 Query: 174 -IPPVLYGLNETRPS-QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 YG+ ET+ + KD + D L L+ G Y +FT+ G Sbjct: 173 FTTSAGYGICETQKTAYTKDGDALYSVMIGGPVKDFDCLPLELAKKTLRAGRYAVFTHRG 232 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + ++GT + +D E Y + + D P N ++ IPI+ Sbjct: 233 TLGNLYKTYQYIFGTWLQTTREELDDREDFEVYEH--EILSFDDPDN-EVKIFIPIK 286 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 119/289 (41%), Gaps = 17/289 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + +++ +L L + +A S +H +++F++VTG IG YI+ RL Sbjct: 104 HYEAVNGVRTYIDQNLFHELDPEQLAEMVHLSFFHFRKVFRNVTGENIGTYIQRLRLEYI 163 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + I +I +Q + ++ + +AFKK F + + YR + P Sbjct: 164 AHLLIATGQSIEEIGMQTNYQTKFSLAKAFKKHFGISMSAYREKYKSVNAKQEPD----- 218 Query: 123 FTMPEHKF--VTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +MPE K + I V ++ + ++ + Y+ H L N P Sbjct: 219 -SMPEAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVH--LQNGP--GNRFVS 273 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 +++ P EQ FY L + +A+ + GG Y +F Y+G + + EF Sbjct: 274 ISQDNPWVTP-MEQRRFYIGVLVEGRANSEGKLLLR-EIPGGMYAVFRYKGSYSDLPEFY 331 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 T+Y P +++ E Y A D L E+ IPI + Sbjct: 332 KTIYNQWFPYSMYHQKRPLTFEVYLNAPDETPV---EELLTEIYIPIDK 377 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 29/302 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E L + LSL+ +A +AG+S +H QR+F +TG + YIR RRLS Sbjct: 11 MEHYTRIQYAITFIEEQLQEALSLEAIAIRAGFSLYHFQRLFHAITGFTVQEYIRKRRLS 70 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A LR+T +LDI++ Y++ SQ+ FTRAF F PA YR+ +R P+ L Sbjct: 71 RAAEELRVTRHTVLDISVSYQYGSQEAFTRAFAGYFGMAPAQYRKHQPL--LALRLPIDL 128 Query: 121 --------GEFTMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFL 168 G TM + + T +IG + + E+I F + + Sbjct: 129 VALTANIRGGLTMYKPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGNHEYFMRI 188 Query: 169 GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHP-VMLQGGEYVMF 227 N P YG+ E F + + V G + L G+Y F Sbjct: 189 PNKAR-PAFAYGIPHGY------GEDGAFSFLIGEEVTSFAEVEEGFACLELPSGKYAAF 241 Query: 228 TYEGLGTGV-QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 G + Q +YGT +P N R +G D E P + + IP Sbjct: 242 R-NGTMPEIGQNAWKYIYGTWLPNSNYERGEGPDFEV-----TDVLNSTPQKISMTIYIP 295 Query: 287 IR 288 IR Sbjct: 296 IR 297 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 119/305 (39%), Gaps = 27/305 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+Q I+ + ++E L + L+L VA YS++H R F G + +YIR RRLS Sbjct: 1 MNQINTIQKSIDYIEERLGEGLTLAEVAKAMFYSEYHFHRTFLFFVGETMTSYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLR 119 +A L + I+DIAL+ F S + FTRAF+K + P RR R PLR Sbjct: 61 LAAELLAHSDLKIVDIALRCGFGSHEAFTRAFRKMYGILPTECRRRGRPPYLVPRANPLR 120 Query: 120 ---------LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL-- 168 GE+ M +++ + ++G + Q H+ FW ++ Sbjct: 121 DFVAQITYDWGEYVM-QYRIEQIPAKRILGFAIQTTTEDGQ----NHKDIPAFWQKYMHE 175 Query: 169 GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 +P L+ E D++ Y D+ + Y +FT Sbjct: 176 QWGSRVPGKLHPNVELGVCTALDEDGTFRYIIGFEVDETTEVQEGLTEYRVPAQTYAIFT 235 Query: 229 YEGLG-----TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 G + +Q+ ++ + P + D E Y K G + ++ Sbjct: 236 TPPAGEADFSSSIQQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGKQ-----IDI 290 Query: 284 LIPIR 288 IP++ Sbjct: 291 YIPVQ 295 >UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LX8_CLOAB Length = 288 Score = 214 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 134/296 (45%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ G + + L ++E +L++ + VA A SK++ R+FK +TG +G YIR R+LS Sbjct: 1 MNWIGDMNNALRYVEENLERNIESGEVANAAHMSKFYFLRIFKILTGMTLGDYIRERKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + + T + I+DI+ +Y +++ + FT+AFK+ +P R+S + PPL Sbjct: 61 LATKDIVSTNQKIIDISYKYGYETPEAFTKAFKRLNGISPTEARKSK--NNLKAIPPLSF 118 Query: 121 -----GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT-- 173 GE M +K T + + GV++ S ++ ++F ++ +FW + + Sbjct: 119 QVIVKGEENM-NYKIETKKSFKIAGVSKR--ISTKEGNNF--KIIPEFWDEVKKSGQCEI 173 Query: 174 IPPVLYGLNETRPSQDKDDE-QEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 I L + D E QE Y A+ D+ +G + + + +F G Sbjct: 174 IEKNAGKLGVMGVCTNFDCEYQEFDYLIAVEGDKIEGL-DNYVVIEVPELSFAVFESIGP 232 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q+ ++ P +G +IE Y P + + R E+ +P+ Sbjct: 233 MPDALQDVTRRIFSEWFPATKYEEAEGPEIEVYLP-----GNPQDKDYRAEIWVPV 283 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 214 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 117/308 (37%), Gaps = 30/308 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + +++ HL L+LD +A + +SK+H R+F VTG AYI +RL++ Sbjct: 3 DYQERVDQVCKYIDAHLHHKLNLDQLAELSHFSKYHFSRIFASVTGETPFAYITKQRLAR 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-------------RSPE 108 +A LR T + +L+IAL F+S +F AFKK F +TP R R+ + Sbjct: 63 AAAYLRETNQSVLEIALGCGFESASSFNAAFKKHFGRTPTEMREQARQDRNISQADRNRQ 122 Query: 109 WSAFGIRPPLR------LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ 162 + P + L + V L V S LE + + Sbjct: 123 EAGAAPNPYHQTVKNNLLRRVWQMQATIVELPLMEAAYVRHVGSY-LETYQAWAKLGMWA 181 Query: 163 FWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQ--DQADGYVLTGHPVMLQ 220 H G++ P+ +++E + +AD G L Sbjct: 182 AQHQLFP----PEQSFIGISLDDPAVTEEEECRYDACVTVPDTLSRADAPPEIGFQ-TLP 236 Query: 221 GGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLR 280 GG Y F + + +++G +P +E + + A D + Sbjct: 237 GGLYAKFNFYDTPDKLALLYQSIFGNWLPDSEYDPDDRYCLE---FSMNDPAQDPQGKAK 293 Query: 281 CELLIPIR 288 +L IPI+ Sbjct: 294 VDLYIPIK 301 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 213 bits (543), Expect = 5e-54, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 130/296 (43%), Gaps = 17/296 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++E HL + ++++ +A + S +H QR F +T +I Y+R RRL+ Sbjct: 1 MSWIESIQKAINFMEDHLLENITIEQIAQEVNSSVFHFQRTFAILTDMSIADYLRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L T + I+D+A +Y +++ + FT+AF+KQ TP+ R+ R ++ Sbjct: 61 LAAQELMDTDQKIIDLAYKYGYETPEAFTKAFRKQHYVTPSEARKRQGPLKSYNRLVIQV 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQ-FWHDFLGNAPT 173 L ++K V + ++GV ++Y+C + +I F E+ F H Sbjct: 121 SLKGAEPMKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNG 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 + G+ P+ ++ + + Y A G L V ++V+F G Sbjct: 181 NINGVLGVCV--PNTNQGQQGFIDYWIATNHVGDVGEDLLTMEV--PASKWVVFEVHGPM 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q +Y P ++E Y P EDA + + E+ IPI+ Sbjct: 237 PDAMQNTWKQIYSEWFPSNPYEPAGTAELEVY-PEEDAYS----PDSYSEIWIPIK 287 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 111/279 (39%), Gaps = 8/279 (2%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L + HLD+PL + +A A S +H R+++ + G + +R RL ++A L + Sbjct: 1 MLDHIYDHLDEPLDIGRLAEIACLSPYHWHRIYQAMYGETVATTVRRLRLHRAAGFLANS 60 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 + PI IA + + S Q+F+R F+ F PA YR S F RP L + + Sbjct: 61 SMPIAQIAERSGYSSLQSFSRTFRAVFGVPPAQYRSQGTHSRF--RPALSGDDQMTMIRE 118 Query: 130 FVTLEDTPLIGVTQSYSCSLEQIS-DFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 V P+ ++ + S QI F + H+ L + V + Q Sbjct: 119 VVIRYVEPMEILSVDHVGSYMQIGKAFDALFGWLAKHNLLAGQMRMIGVYFDDPGVVEEQ 178 Query: 189 DKDDEQEVFYTTALAQDQADGYVLTG--HPVMLQGGEYVMFTYEGLGTGVQEFILTVYGT 246 + V + + A G + G ++GGEY + + G + ++ +YGT Sbjct: 179 ALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDWLYGT 238 Query: 247 CMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 + E Y ++ P L E+ + Sbjct: 239 WLVQSGREAADAPVFEEYL---NSPKETAPAELVTEICL 274 >UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MRK1_SALAR Length = 286 Score = 212 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 122/286 (42%), Gaps = 5/286 (1%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + I++ + W+E H+++ ++D++ GYS+ +Q MFK G +G Y+R R++ ++ Sbjct: 4 EKKIVQHFVRWIEDHIEEDKTIDDLVNYTGYSRRAVQLMFKKEYGVPVGTYMRQRKMCRA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LRLT +++IA + F Q F RAFK F TP YR P W + P + + Sbjct: 64 ATLLRLTKLSVIEIAHRVHFSGTQNFGRAFKHAFNMTPTEYRNLPSWDLSLLVPAINIDN 123 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHE-MRYQFWHDFLGNAPTIPPVLYGL 181 + V + G Y + + + R + + T ++ Sbjct: 124 CWNVDSCIVERSGIYVSGDECFYQQKILRTPTLESKRNRLKKIRHYSELYKT--NIVIAS 181 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 N P ++V T L+ + + ++GG Y+ F + G + +F Sbjct: 182 NFLPPKNRYSAIRDVIDITMLSGVEVEKNTAKNDTFYVEGGRYIKFVFNGKWSDYSKFSH 241 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P L RR G DIE ++ + D C+ IP+ Sbjct: 242 YIYMNILPKTKLHRRSGADIELFHYTTNFYDDD--PKFICDYFIPV 285 >UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I964_9CLOT Length = 286 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 129/299 (43%), Gaps = 24/299 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E H+ + ++ ++VA S +H R+F +TG YIR RRLS Sbjct: 1 MNYIQSIQKSIDYMENHILEDINYEDVARHVYMSNYHFHRLFSMITGITANEYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPL 118 + + ++ +LDI+L+Y +DS ++F++AF + TP + RRS S + + Sbjct: 61 MAGQEISMSDAKVLDISLKYGYDSPESFSKAFMRFHGVTPNIARRSGMKLKSFNSLVIKI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN-------A 171 L T+ ++K V E L+ + + +E IS+ +E FW++ N + Sbjct: 121 SLEGGTVMDYKIVKKESFKLLVKVKEFR--VESISEDNNEDIPNFWNECAENGVFDVLKS 178 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 T +YG+ + + + Y A+ D D + + +F G Sbjct: 179 NTTNHDIYGVCK----PISKESKYFDYGIAMKYDGGD-VPEGYKVWDVHPTLWGVFKCVG 233 Query: 232 -LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + E ++ +P + T D E Y D + CE+ IP+ + Sbjct: 234 ENGDCIGEMWNRIFNEFLPSSDYTMLDDIDFEFY-------KEDNNTDCFCEIWIPVEK 285 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 62/290 (21%), Positives = 116/290 (40%), Gaps = 25/290 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I+++++++ GHL + L+ D +++ +G SK+H +R+F+ TG IG+YI+ R+ Sbjct: 105 HHKMIQNIIVYINGHLTEVLNTDTLSSMSGLSKFHFRRVFRTATGENIGSYIQRLRMEHV 164 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + I Q + ++ + +AFKK F + + YR G P + Sbjct: 165 AHLLISTDYTLKQIIEQTSYQTKYSIAKAFKKHFGISTSQYREKHR--PNGENPATNIK- 221 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP-----V 177 PE K ++ I V ++Y L+ W+ L +A Sbjct: 222 ---PEIKVISPIKIFCIEVGEAYKNKLKY---------RLLWNKLLHHAEQYEADPRYDK 269 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 L+ PS ++ + L D V + GG Y +F + G + + Sbjct: 270 FISLSMDDPSITPTEKCRFYLGITLRDDTKARPVPGIMQ--IPGGRYAVFRHTGSYSSLH 327 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + ++Y P + E Y + + L E+ IP+ Sbjct: 328 KVYRSIYEEWFPKSKYHPQSTFSFEMY---MNHPSTTETSELLTEIYIPV 374 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 120/297 (40%), Gaps = 24/297 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++L++++ +LD LS + +A A +S H R+FK + G ++ ++R RL ++ Sbjct: 8 YNERMMEVLLYIQRNLDGDLSPETLAELACFSVAHFHRIFKGMVGESLKEHVRRLRLERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW-------SAFGIR 115 + L + +++IAL F+S +TF+RAFKK+F +P+ +R + R Sbjct: 68 SYRLCYSNTTVMEIALDAGFESPETFSRAFKKRFLVSPSDFRNNSRTMLALGGDGKIHYR 127 Query: 116 PPLRLGEFTMP------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 169 P + F + E + T ++ ++ + + +++ ++ W F Sbjct: 128 PDPNIESFELDSTPHSCEVEIRTRDEIQVVFI--RHVGPYPKVTKAWEKLCG--WG-FGK 182 Query: 170 NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 + GL+ P E ++ Y ++ ++ GG+Y + T+ Sbjct: 183 GLFSEKTEFLGLSYDDPDITP--EGKIRYDACFTVNEEVETPPEMGLQVIPGGKYAVTTH 240 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKG-QDIERYYPAEDAKAGDRPINLRCELLI 285 G + +YG +P + E+Y P E+ + Sbjct: 241 YGPYEKMHGIYRELYGKWLPSSGYQLKNTIPSFEKYIKVPPDVP---PEEAVTEIWL 294 >UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBQ6_9ENTR Length = 288 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 6/285 (2%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + I DL+ W+E +L L++D ++ K+GYSKWH+QRMFK++TG + +Y R RRL+ S Sbjct: 7 KKQYINDLVDWIEANLTDELNIDLISLKSGYSKWHMQRMFKEMTGQTLASYTRKRRLTMS 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ALRLT P++DIA+++ FD+QQ FTR FK F+ TP YRR PE + + Sbjct: 67 AMALRLTRMPLIDIAVRFGFDNQQNFTRVFKNHFSLTPGAYRRIPELQLKDFHSRIP-TQ 125 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + L G + C + ++ Q DF+ A + Sbjct: 126 HRWVDVRLAEKPELRLCGEVIEWECRFGEYIHDHGDVVAQHARDFVAFAGQHVNKGWLGF 185 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + P + D+Q + AL D + G Y ++G + F Sbjct: 186 QFSPGEGSADQQHISLFQALESQHGDVLPSNVVNWTGESGLYAEIDWQGAPEQINAFTAD 245 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P L + RR+G+D+ R P L IP+ Sbjct: 246 MYYIHLPALGVARREGKDLLRLDLQ-----NSTPDLLTGTFFIPV 285 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 28/306 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I+ + ++E H+ + LSL +A A S +H R+F+ + G + Y+R RRL+ Sbjct: 4 DYLAQIQQTIDYIEAHISEELSLSRLAQVAKLSDFHFHRVFQSMAGETVMEYVRKRRLAI 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP-------EWSAFGI 114 SA + + ++DIAL F + +TFTRAFK+ F TPA YR+ + Sbjct: 64 SAYQVANSDAKLIDIALDTGFQNHETFTRAFKRMFEMTPAEYRKREIKPPAYSRLNVLQR 123 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYS---CSLEQISDFRHE-MRYQFWHDFLGN 170 + LG M E+K +T +IG + ++I F E ++ + + + Sbjct: 124 KYNPYLGGIRM-EYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNR 182 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVF-YTTALAQDQADGYVLTGHP-VMLQGGEYVMFT 228 PV G+ + D + F Y + + DG G G EY +FT Sbjct: 183 VHKESPVELGI-----CYNFDMGSDSFSYLIGMEAESFDGVEGEGLVCREFDGAEYAVFT 237 Query: 229 Y-----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 E + +Q +TV+G P + E Y D ++ ++ ++ Sbjct: 238 TPKVPREQFSSSIQNTWMTVFGEWFPHSGYEHAGTPEFELY----DERSNHELSEIQMDI 293 Query: 284 LIPIRR 289 IPI++ Sbjct: 294 YIPIKK 299 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 119/296 (40%), Gaps = 24/296 (8%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 + ++ +L LSL+++A ++ +S+W LQR+F+ TG + Y+R +LS++A L Sbjct: 1 MAYIHANLSSALSLEDLATQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDGK 60 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF------- 123 ++DIAL F+S+ +F+R+FK+ F +P+ YR++ + G++ P+++ E Sbjct: 61 DRVIDIALGLGFNSEISFSRSFKQMFGVSPSQYRKAGKR--VGLKKPIQVSETASNSENR 118 Query: 124 --TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT-IPPVLYG 180 + E + E + G+T S DF ++ Q W G +L Sbjct: 119 ALSFVEVRIDEREPFLVKGMTSEISGLFSLTQDFAQKV-PQLWSRLEGEVEIPDANMLQF 177 Query: 181 LNETRPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + +Q D ++Y + + + Y + + G Sbjct: 178 IGVVDLTQSCFDGTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPI 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + + +P G ++E Y + E +PI + Sbjct: 238 EHLPHTLSWFVLNWLPNSGYRGVDGYELEMY----PFGYQAHASDAEMEYWVPIIK 289 >UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQJ6_9FIRM Length = 289 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 122/294 (41%), Gaps = 18/294 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 II++++ +++ HL+ L ++++ +AGYS++HL RMF +TG ++ YI+ RRL+++ Sbjct: 4 NIQIIQEVVDYIDSHLEDRLDAESISRQAGYSRYHLSRMFTSITGLSLHTYIQRRRLTEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T RP++DIAL + SQQ FT F+ F TP +R+ ++ L+ Sbjct: 64 ARQLVFTDRPVMDIALSAGYGSQQAFTVGFRALFRTTPRAFRKKGDFHPL----QLKFTA 119 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV----- 177 + + D + Y ++ + + Q W TIP Sbjct: 120 DGTDALRGDRIMDIRTMESGPIYLAGYKKNTRLGFFVIGQCWRRLHAAKHTIPNRKDPDF 179 Query: 178 LYGLNETRPSQDKDDEQEVF-YTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTG 235 L GLN+ D Q F Y A Q Q L G+YV+F + Sbjct: 180 LVGLNDYTKWDADADRQPAFDYYAASEQTQPGRLPPGMEAKELPAGKYVIFRFRARSTDS 239 Query: 236 VQEFILTVYGTCMPML--NLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q +Y T P L D RY DA E +PI Sbjct: 240 LQPVADYIYKTWFPQSTCRLNGHAPYDFARYGEEMDADGKS-----LIEYWLPI 288 >UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR1_ECOSE Length = 294 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 8/287 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II D+LIW+E H++ + +++V +GYS+ ++Q +FK TG ++G Y++ RRL Sbjct: 1 MLQTMIINDILIWIENHIEDGIIIEDVVNLSGYSRRYIQYLFKKETGLSLGGYLKRRRLC 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + A+ +RLT +LDIA++ RFDSQQ+F+R FKK F P +YR W + PP Sbjct: 61 RGAMYVRLTTMRMLDIAVRLRFDSQQSFSREFKKVFNCPPYIYRTRDYWDLSCLCPPWEY 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ FV L G SY+ ++ + +R + + + Sbjct: 121 NMTGIPKVDFVRLPQLSYSGHMFSYNENI--LGTRGEAVREKNITNDMRLYSEN-----F 173 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L T S + + VF T + + + + GEY+ ++G + +FI Sbjct: 174 LYITYYSPSIKNSENVFIKTFSCPQENEERKCNNQNISIPAGEYLKTYFKGNIASLHKFI 233 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 VY +P + RR+G DIE Y+ + + D+ + + +P+ Sbjct: 234 RQVYFVILPEYKMARRRGGDIE-YFDICEYRNNDKKPYVNLQFFVPV 279 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 27/303 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L+ ++ +LD+ +SLD +A A +S++H R+F+ +TG +G ++R +L ++ Sbjct: 38 YESRLLRVLVHIQRNLDRAMSLDELADVAAFSRFHFARIFRAMTGETVGEHVRRLKLERA 97 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR---------RSPEWSAFG 113 A LR T + + +IAL FD+ + F+R FK QF P+ +R RSP + Sbjct: 98 AGKLRHTRQTVTEIALDAGFDTPEAFSRTFKAQFGDPPSRFRVLRGSFRPPRSPSGVHYD 157 Query: 114 I------RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQI-SDFRHEMRYQFWHD 166 P + + + P + + I FR Sbjct: 158 QDGVLRGFTPYQGADPMTLDVSTREFPTYPFAFL--RHVGRYNDIGPVFRRVAAIADERR 215 Query: 167 FLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 G + V Y PS DEQ + ++ + GG Y + Sbjct: 216 LFGPDTKVMMVAY----DDPSVT--DEQRLRSDAGVSLTDPTVDTGELIKGEIAGGLYAV 269 Query: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 Y+G G++ + G+ +P ++ Y + RP +L E+ +P Sbjct: 270 TVYKGPYDGLRNCYDWLMGSWLPNSGYEAADRPCVDVYL---NKVEDTRPEDLLTEIRVP 326 Query: 287 IRR 289 IRR Sbjct: 327 IRR 329 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 111/286 (38%), Gaps = 9/286 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ +LD + + +A + +S +H R+ + + G IGAYI R+ + Sbjct: 11 YQQNLNRVIDFIHNNLDSKIDIALLAELSHFSPYHFHRITRALLGEPIGAYITRARIETA 70 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LR + I IA + F++ + ++AFK F +P+ +R E+ + ++ E Sbjct: 71 AKLLRYSENSIEQIAYKVGFETPSSLSKAFKNHFGISPSAHRNKKEF-IIKKQNIMKTKE 129 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + K V LED + T + ++ + T GL Sbjct: 130 LNIKKPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQ---KLFTKGIKHIGLP 186 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P + D+ Y L + L+GG++ +F Y+G + Sbjct: 187 YDDPKITEADKIR--YDACLIIHKDAKPNGDVGVKELKGGKFAVFLYQGSYKHFADVYDH 244 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ + R E+Y + ++ L+ E IPI+ Sbjct: 245 MFNAWLINSGHELRDAPSREKYISDARRVSEEK---LKTEFYIPIK 287 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 17/294 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ +LD+PL++ +A + +S+W LQR+F++ T H + Y+R ++LS++ Sbjct: 9 HLNRVEKIVDYIHQNLDKPLTVTELADISCWSRWQLQRVFQEQTNHNLAQYVREQKLSRA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS----AFGIRPPL 118 A L + + + DIAL + F+S+ +F+RAFK+ FA +P YR + + + P L Sbjct: 69 AEQLLKSDQKVTDIALDFGFNSEVSFSRAFKQLFAISPRQYRLVGKLNGIRLPLVMSPEL 128 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF----LGNAPTI 174 L + + + +T GV F ++ W F L ++ Sbjct: 129 PLAQAATQVVRIESKPETQFWGVYGPIDSIYAANPQFSQQV-LDIWGTFTQIALQHSIAP 187 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 YG+ +T ++ Y A + + A + V + Y + T+ G Sbjct: 188 NHFYYGIVDTVRVL---PNSQLVYWAA-SDNPAFSQISQLEHVTIPAQMYAVITHVGPAA 243 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + V + +P +G ++E Y + E +PI+ Sbjct: 244 TFPKTLEWVLQSWLPSSGYMGLEGFELECY----PRDYQLESHEAKMEFWLPIQ 293 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 12/287 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + + ++ HLD+ LSL+++AA A YS H R+F+ + G + Y+R R+ ++ Sbjct: 8 YEAKILRVQLLIQHHLDEDLSLEHLAAAADYSPCHFHRIFRGIVGESADDYVRRLRMERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-RLG 121 A +LR R +LDIAL + S + FTRAF + F TP+ Y +S E I+ L Sbjct: 68 AQSLRYRRRSVLDIALDAGYGSHEAFTRAFVRTFGVTPSDY-QSLEHPPASIKETLMSTV 126 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQI-SDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +T + T L + E + F +++ ++ + T G Sbjct: 127 NYTAAHVRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLM----TDCTACVG 182 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P ++Q + D + G+ + ++G + E Sbjct: 183 VYHDDPDVTAPEKQRADVGVTV--DDQFQPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAY 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +P E Y P ++ +P+ Sbjct: 241 RWFFSVWLPDSGHEPGDFPAYEIYVNDASQLP---PDQWLTDICVPL 284 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 116/290 (40%), Gaps = 14/290 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ + +++ HLD+ L +D ++ A SK+H R+F G + +I+ RL ++ Sbjct: 4 YTQKLQLVCDYIQRHLDEDLDVDRLSQIAALSKFHFHRIFAIHVGLNVMKFIQLSRLKRA 63 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + L I++IALQ FDS + FTRAFK+ F QTP +R P+W ++ + + Sbjct: 64 SFQLAFEPDLKIIEIALQAGFDSPEAFTRAFKRSFDQTPRAFRDKPDWESWHQKFVFTIP 123 Query: 122 EFTM-PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIPPVL 178 + + V + ++ S D E QF W G +P Sbjct: 124 KSELKMNVNIVERPAEKIAYLSHLGS------PDKVLETAAQFIAWRKETGLSPVTKSKT 177 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 YG+ P Q DE ++ + + + G Y + G +++ Sbjct: 178 YGIPFADPDQTPADEFRFDIAGSIEKAVPENS-YGVQTGEIPAGRYATVRHFGSHDQIKD 236 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++ +P + D ++ + +L ++ + ++ Sbjct: 237 SVYYIFRNWLPE---QPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLLK 283 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 25/302 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E HL + +++VA AGYS +HL R F + G +IG+YI+ RRL+ Sbjct: 1 MDYRKALEHAVMYIENHLGSDIKVEDVAKAAGYSYYHLNRQFTAILGESIGSYIKKRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A + T R I+DIA++ F+S + F+RAFK + +P YR++ + + L Sbjct: 61 DAAKKILYTNRKIIDIAMENGFESPEAFSRAFKAIYKVSPQTYRQNRLDTFIAGKERLDS 120 Query: 121 GEFTMP------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 G K V L + + G+ + ++ + W I Sbjct: 121 GLLDHLARNVTVHPKIVELPEIKVAGLRGETTLRDNRLR--------ELWDRANSLYIQI 172 Query: 175 PPVL-----YGLNET---RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 P + +G+ E +D+ + G ++ GG Y + Sbjct: 173 PNRIPNGRAFGICEACAENTLYTMNDDILFTEVAGIEVSSFAGLTEPFVQKIIPGGRYAV 232 Query: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 FT+ G + + ++GT +D E Y ++ G + +L IP Sbjct: 233 FTHRGTLGMLPQTFDYIWGTWFLTTKEEMDWREDFELY---DERFLGYDHPDSEVDLYIP 289 Query: 287 IR 288 IR Sbjct: 290 IR 291 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 119/326 (36%), Gaps = 53/326 (16%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + A I +L +++ HLDQPL ++A A +S++H R+F G +G+Y + RRL K Sbjct: 13 EYARRINRVLNYIDAHLDQPLDGAHLADIANFSRFHFHRIFAAWMGETLGSYAQRRRLEK 72 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-----RSPEWSAFGIR 115 +A L + +L+ AL F S + F RAFK +F TP+ +R R +A + Sbjct: 73 AAFRLSCGSKETVLETALATGFQSGEAFARAFKLKFGCTPSAWRSTTLERMKTQAAAIGQ 132 Query: 116 PP----------------------------LRLGEFTMPEHKFVTLEDTPLIGVTQSYSC 147 PP L E + + + L + Sbjct: 133 PPGSQQSNPDQVFGNLHQEDLRAFGEPQGSCHLKEEIAMDVRIIDLPKAHV--------- 183 Query: 148 SLEQISDFRHEMRYQFWHDFLG----NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALA 203 + +++ QFW + + YG+ PS + + Sbjct: 184 AYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTPASKCRYDACVEVP 243 Query: 204 QD-QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIE 262 A G V T L GG Y + ++G G+ + + MP + E Sbjct: 244 AHFVASGQVDTQ---TLPGGRYAVARFKGKPEGLANAWMWLTREWMPSSGMQCDDRPCFE 300 Query: 263 RYYPAEDAKAGDRPINLRCELLIPIR 288 + A A C++ IP+R Sbjct: 301 MFSAATAMDADTG--EFCCDICIPVR 324 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 206 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 135/298 (45%), Gaps = 26/298 (8%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I ++L+++ ++D+PL+++ +A + +S+W LQR+F++ TG + Y+R +RLS SA+ Sbjct: 12 NRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSAL 71 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR----- 119 + + +LDIA Y F S+ F+RAFK+ F ++P Y++ + +P L+ Sbjct: 72 EVLDKKKRMLDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGI-QKPFLKQVNVD 130 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF---LGNAPTIP 175 L + ++G++ L DF ++ W+ + P+IP Sbjct: 131 PLLNSHFYRVRLEYKPSFKVLGLSTRLQGILSDTPDFNEKV-PSVWNALDTSIVYLPSIP 189 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTT-----ALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 Y + +TR +++ + Y AL+ D+ + + + + EY + ++ Sbjct: 190 EQKYAVIDTR----EENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFK 245 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G + + + +P +G D+E Y + D E +PIR Sbjct: 246 GAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYQSSTTQGVID------VEYWLPIR 297 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 124/294 (42%), Gaps = 21/294 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q ++++ ++ HLD+ L+L +++ S++H R+F TG + YI RL ++ Sbjct: 9 QLNRVKEVCSYIGQHLDEELNLTHLSQVGLLSRFHFHRLFLAATGMQLNRYILLLRLKRA 68 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-----IRP 116 + L + R ILDI ++ FDS + F+RAFK+ F Q+P+ +R +P+W + + P Sbjct: 69 SFRLAFESKRKILDIGIEAGFDSAEAFSRAFKRTFQQSPSQFRSNPDWPHWHSVMTLVNP 128 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTI 174 P G+ + + K + L + + S + + E QF W G +P Sbjct: 129 P--QGDIIV-DVKLIELPIQKVAQLEHSGA------PEKLMETAKQFIEWRKTTGLSPVA 179 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 YG+ P+ ++ + ++ + D L GG Y + +EG Sbjct: 180 ISRTYGVPNGDPNTMAAEDFRFRFCGSVNEAVPDNE-YGVVTGTLAGGCYAVIRHEGSHD 238 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ I + +P R Y + +L ++ +P+ Sbjct: 239 AMESSIYGFFREWLPQSGKAMRDEPLFFHYL---NFIHQVDECDLLTDIYLPLE 289 >UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTW1_9CLOT Length = 286 Score = 206 bits (524), Expect = 9e-52, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 15/294 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + ++ VA A S +H QRM+ +TG +G YIR RRL+ Sbjct: 1 MDWLNAMNKAVEYVEANITNKIDIEEVAKIALSSTFHFQRMYHMITGITVGEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP--L 118 + + + I++I+ +Y +++ + FT+AF+K + +P R S + L Sbjct: 61 LAVQDII-SGEKIINISHKYGYETPEAFTKAFRKMYGVSPTAARESGVNLKAYPKLSFHL 119 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL--GNAPTIPP 176 + ++ E ++G S EQ +FW + G+ + Sbjct: 120 SIKGDKDMNYRIFDKESFMVVGKQAKISMIDEQ----NFSQVPKFWRGCMKEGSYQWMSS 175 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 L S+D D ++ F + + + F G Sbjct: 176 KAGKLGILGISKDFDKYKDEFNYMMAIEKIQSTIPKGYVSANIPAATWAAFEAVGPVPEV 235 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + + + +Y MP + D+E Y P D + N CE+ IPI++ Sbjct: 236 LHDLLRRIYSEWMPSMGYQHDCAPDLEIY-PIGDMFSR----NYSCEIWIPIKK 284 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 29/289 (10%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ HLD+ + + +A AG S H R+F+ +TG ++ ++R RL ++ Sbjct: 7 WGQRILRVVDHVQAHLDEDVDPETLADIAGLSLHHFHRVFRGLTGESVMGFVRRLRLERA 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L+L P+ +AL+ + S + FTRAF+ +F P YR E Sbjct: 67 AMQLKLGEAPVTQVALEAGYGSHEAFTRAFRNRFGVPPRAYREQTRVEV----------E 116 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP---TIPPVLY 179 +P + IG+ + S S Q W + + +A +P VL Sbjct: 117 VGVPRVELRDDPALTCIGLRHTGSYS----------ECGQTWGELMAHAAKAGWMPHVLG 166 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM---LQGGEYVMFTYEGLGTGV 236 + D + + Y + + A L P + L G Y + + G + Sbjct: 167 SVGLAYDDPDITAAERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESI 226 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 E + + G +P + IERY D A LR E+ + Sbjct: 227 LETYVGLIGRALPFRGVELANEPVIERYL---DDPATVPLHELRTEICV 272 >UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=Clostridium RepID=A7FVD8_CLOB1 Length = 294 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 122/297 (41%), Gaps = 18/297 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ ++ + L ++E +L +++D+++ A S++H QR+F +TG + YI+ RRL+ Sbjct: 1 METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L T R I+DIAL+Y ++S + FT+AFK+ +P+ ++ + ++ Sbjct: 61 LAAEELVSTDRRIIDIALKYGYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQI 120 Query: 121 GEFTMPE--HKFVTLEDTPLIGVTQSYS----CSLEQISDFRHEMRYQFWHDFLGNAPTI 174 E ++ V E + G + + ++I +F +++ F Sbjct: 121 SIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKI---FKDGTHDRINEA 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 G D + Y + + + + + +F G Sbjct: 178 LGNSKGSLLDGFHYDFKENGTRKYMMGYEIPRTE-ISDEFTILQVPKLTWAVFEGYGAMP 236 Query: 235 G---VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q+ +Y P + +G IE+ + + +CE+ IP++ Sbjct: 237 DNLIIQDIWRRIYSEWFPSSGFEQVEGPCIEK-----NFWNNKKHDEYKCEVWIPVK 288 >UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP62_CLOCL Length = 292 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 112/296 (37%), Gaps = 14/296 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +++ + ++E ++ + ++ D +A A S +H QRMF +TG +G YIR RRL+ Sbjct: 1 MDWINSMQNAINYMEDNILEEINYDKIAQCAYSSTYHFQRMFSMLTGFTVGEYIRNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPL 118 +A L + I DIA++Y + + + FT+AF++ TP R S S + + Sbjct: 61 LAAQELSFSKERITDIAIKYGYGTSEAFTKAFQRFHGITPTAARESGVKLKSFNSLSIQV 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWHDFLGNAPTI 174 L +K + E + G + +I +F + + Sbjct: 121 TLKGDKEMNYKIIEKEPFKIFGKDFKTNIIGGRCFSEIPEFYAKCISDGTSAKIIRNAGK 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 P + + D + D + + + + +F E Sbjct: 181 PENGILDVGVLFNHNPQDGSMRYMIGCDVTDTNTNILTEFRILEIPSLTWAIFEVENNSD 240 Query: 235 -GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + P + ++ERYY D RCE+ IP+ + Sbjct: 241 EDIHEMWRRIGSEWFPASSYEHADAPEMERYYGNNDTG-------CRCEIWIPVIK 289 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 133/302 (44%), Gaps = 22/302 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q I+ L +E + PLS++ +A A S WH QR F + G +G YIR RR++ Sbjct: 22 MRQIQAIQTQLDRIESLITAPLSIEKLALDASMSYWHFQRTFTAMVGEPVGRYIRRRRIA 81 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ L +LD+AL Y+F+S + FTRAFK + + TP+ +R S R L Sbjct: 82 HAAMRLLDYESTLLDLALDYQFESHEAFTRAFKNELSVTPSDWRE-GRGSILYPRHREHL 140 Query: 121 GEFTMPE--------HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 + + + + V+L T G+ + + ++ + W+ F A Sbjct: 141 TQAKLDQRYKNMRLLPEIVSLPSTTFAGLQSRFLSATSDEAN-NMTVIPNLWNAFFERAS 199 Query: 173 TI----PPVLYGLNETRPSQD--KDDEQEVFYTTALAQDQADGYVLTG-HPVMLQGGEYV 225 + V YGL+E + + + E Y A AQ D V G H GG + Sbjct: 200 ELQNLTEGVYYGLSENPEAINLARQHPDEAIYLAA-AQVDPDAPVPEGMHSWNSVGGLFA 258 Query: 226 MFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 F ++G + E I +YG P R+G DI R+ P + + N E+ + Sbjct: 259 KFEHQGPVDTLGETIAYIYGKWFPESEYKEREGPDINRFGP----RFIPQSENSLFEIFV 314 Query: 286 PI 287 PI Sbjct: 315 PI 316 >UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE Length = 310 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 124/299 (41%), Gaps = 21/299 (7%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 I +L ++ +LD LS+D ++ + +S+W LQR+F+ TG ++ YIR +LS +A Sbjct: 11 INRIHSVLDYIHNNLDIALSVDEISKASCWSRWQLQRVFQQHTGVSVAHYIRELKLSLAA 70 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 L T+ LDIA++ F S+ F+RAFK F+++P YR++ + + G+R PL L + Sbjct: 71 ERLIHTSDRSLDIAIEMGFASEHAFSRAFKNMFSKSPRDYRKAQQLT--GLRQPLTLRDT 128 Query: 124 T--------MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 E + T L G + +F+ ++ W + Sbjct: 129 PEDENRHKCFIEVRIETKPAFVLAGYHEPIYGLFSATPNFQSKV-PSLWSQLYSSENHTH 187 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD------GYVLTGHPVMLQGGEYVMFTY 229 L ++ Q++ Y + A G +++ Y + T+ Sbjct: 188 LERNYLGVIDVTKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITH 247 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G + + + +P N G ++E Y D ++ N + IP++ Sbjct: 248 IGKASNLAATLEWFILHWLPYSNYHGIDGYELEVYPEDYDVES----ENAQMHYWIPVK 302 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 114/290 (39%), Gaps = 22/290 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ HL++PL ++ +A + S++H R+ + + YI +R+ ++ Sbjct: 9 YLQQVNRVIDYINSHLNEPLRVETLAREVCLSEYHFHRIMRAYLHEPLATYIARQRVERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP----EWSAFGIRPPL 118 + L++ + +A +++ Q+ ++AFK+ F +P YR+ E + + L Sbjct: 69 VMYLQMKNIRLAQVAEMVGYETPQSLSKAFKQFFGISPTAYRKRRAERYEEFSTLKKESL 128 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + T PE K V + G + Y + ++ DF + T Sbjct: 129 KPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQ----------INGLLTPSTRW 178 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 G++ P+ K EQ FY A + G + G Y ++T G +G+QE Sbjct: 179 IGISFDDPTVTKT-EQCRFYACATVEHDVSPQGAFGMK-TIPQGRYAVYTLRGSYSGLQE 236 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P R E Y E + + IPI Sbjct: 237 MYDRIYSHPLPT---AFRDATSFEEYLNCEP---DTEEKDYVTRIYIPIE 280 >UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BA46_9GAMM Length = 293 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 17/292 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + LL ++ H+ +P+SLD +AA++ +S+W LQR+F TG+ + Y+R +LS +A Sbjct: 8 NRLDQLLDYIHRHIHEPMSLDTLAAQSAWSRWQLQRVFVAYTGYTVAQYVRELKLSLAAD 67 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE-- 122 L + +LDIAL + F S+ F+RAFK+ F +P YR+ S GIR PL+ + Sbjct: 68 CLLENSDRVLDIALSFGFGSEVAFSRAFKQFFKVSPHQYRKRGLRS--GIRTPLQRADVS 125 Query: 123 ------FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 T+ + G+ + L +F + W F P Sbjct: 126 RLNLPANTLYHVRLEHKPAFDFCGLPTRINGLLSGQPNFEDRI-PAAWQHFQQLTHRRLP 184 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + + ++ Y T + Q + V + L +Y + Y+G Sbjct: 185 TDRPRIGLIDTFSQPTLGQLVYWTGIEQSKPSAPV-FLEKLSLPTSDYAVLPYQGPIDHF 243 Query: 237 QEFILTVYGTCMPMLNLTRRKG-QDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + +P ++ + ERY P+E A + + E +PI Sbjct: 244 KHAVTWLLAEWLPNADVHHSNNRFEFERYLPSETAGS----EMVNAEYWLPI 291 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 203 bits (517), Expect = 6e-51, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I ++ ++ HL + L+L+ +AA+ S +H R+FK + AYI +R+ ++ Sbjct: 9 HQELINQVIDYIHTHLHKALTLEMLAAEMHMSVYHFHRLFKSHLQETLSAYITRQRMERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + L+ + +++ + +D+ Q+F++AFK+ F +P + + ++ P Sbjct: 69 VMYLQTRDLSLQELSEKMGYDTAQSFSKAFKRYFGVSPVAFGNTLTFNTPETTP------ 122 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF-WHDFLG-----NAPTIPP 176 + + F+ L++ ++ ++ Y + I + + Y+ W G + Sbjct: 123 --IEDIAFIGLDEPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQSKAT 180 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 +G++ P+ K + FY A + G + ++ G+Y ++TY+G +G+ Sbjct: 181 RWFGISFDDPTITKKKQCR-FYACASVAQRIKPSGAIGT-LTIESGKYAVYTYKGSYSGL 238 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y R E Y D P ++ IPI++ Sbjct: 239 LRAYTYIYSRE----KGRLRNALSFEEY-----VTWSDNPAKQITKIYIPIQK 282 >UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Y7_9GAMM Length = 297 Score = 203 bits (516), Expect = 6e-51, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 114/292 (39%), Gaps = 15/292 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ L+ +E +L +++ +A S WH QR FK + G +G YIR RRL+++A L Sbjct: 8 IQTLVDRIEANLADDVNVLGLADAFHMSPWHFQRTFKSLIGDTLGGYIRGRRLTRAAQLL 67 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 + R ++DIA+ F+S + F+R+FK F TP +R +P L L F Sbjct: 68 LESRRSVIDIAVSVGFNSHEAFSRSFKAYFNVTPKAFRAERPAITLREKPLLTLELFQHL 127 Query: 127 ------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL-- 178 + LIG + D+ ++ + W D L +P + Sbjct: 128 ADGMDQNPVITERPEQHLIGQQIAIPSPFVSDVDYC-DLLFTPWTDLLSVEAALPGRVPG 186 Query: 179 -YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT-YEGLGTGV 236 Y PS ++ + A Q + + MF Y G V Sbjct: 187 EYFGLMVSPSGTFTEDSLFYLAGAGVQQPIADPGEGMVALSFPAQQVAMFDIYSGTEDTV 246 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + +YG +P TR G D E + D L ++PI+ Sbjct: 247 AQTVDFIYGYWLPNSQYTRAGGHDYEYFENVSDFTV----PRLHSRYVLPIQ 294 >UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Bacteria RepID=Q17ZV7_CLOD6 Length = 289 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 17/296 (5%) Query: 1 MDQAGI-IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 MD I I L ++E HL D+ L L+ ++ + GYSK+HL RMF V G ++ YI+ RR Sbjct: 1 MDNNLITIEKTLDYIEKHLLDEMLDLNVISKEIGYSKYHLHRMFTSVVGFSVHNYIQRRR 60 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 L+++A L T +PI++IAL +D+Q++F+R FKK F ++P +RR ++ ++ + Sbjct: 61 LTEAARMLIFTEKPIIEIALISGYDTQRSFSRGFKKMFKRSPNFFRRHQDFLPLQLKFDI 120 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 +L + + K V D ++G + I ++ + + Sbjct: 121 HNRKKLRGDMVLDVKKVNCADINIVGYSGKVRKGFHIIGKCWRDLHK---NKEMIENKVD 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 L G+++ ++ ++ Y +L Y++FT+ G Sbjct: 178 LGFLIGVSDYSNFKEIENTPTFTYIAGAQVATFGKLPNGMEKFVLPKSNYIVFTFIGKNE 237 Query: 235 G-VQEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q + +Y P + + D +Y D + +PI Sbjct: 238 DSMQNVVEYIYQEWFPNSSCQFNENNLYDFVKYGEKTDENGLS-----EIQFWVPI 288 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 14/289 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + +L ++ HLDQ L ++ +A A S +H R+++ + + A +R RL K Sbjct: 8 NYRRRLCRVLDYIHNHLDQDLDVNALAEVALMSPYHFHRIYRQMANETVNATVRRLRLQK 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR------ 115 +A L + + IA + S + F RAF K++ ++PA YR + Sbjct: 68 AASDLIRSNLSLDRIAKDVAYSSPEAFIRAFSKEYGESPAAYRDKRQQPIIPTEQLSVEL 127 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 PL TM + + E T L+G +E + F + +G Sbjct: 128 QPLSKECKTMFNVEMMEFETTNLLGYEHKGDY-MEIGNAFDKLFMFAGSKRLIG----PE 182 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ P E ++ + + + G ++G Sbjct: 183 TRSIGIYYNDPGSVDASELRSHACISVEAPRDAEEEQDPENLQIPAGRCATLLFKGPYAE 242 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 +++ +G +P L + D + + P L + Sbjct: 243 LEKPYNWFFGQWLPQSGL---EAADFPPFEEYLNDPRTTAPSELLTRIH 288 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 106/301 (35%), Gaps = 24/301 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ L+ ++ HL++PL L +A AG S++HL R++ + G +I I+ RL K+ Sbjct: 11 YESRLQKLIDYIYDHLNEPLDLMTMADVAGISQYHLHRIYTSIYGESISNMIKRLRLHKA 70 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T I A + Q+FTRAF +F PA +R+ G P L Sbjct: 71 AGNLINTDMSINQAASLSGYRHLQSFTRAFSAEFGTPPASFRQQRR--NLGAEPMTLLTP 128 Query: 123 FTMPEHKF--------------VTLEDTPLIGVTQSYSCSLEQIS-DFRHEMRYQFWHDF 167 + + K ++ DTP+ V + S I F + Sbjct: 129 YKVAREKRNMQDANVNSTFSVSISQLDTPIHMVVYPHQGSYMNIGQAFEKLSGWAGMRQL 188 Query: 168 LGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 + + P + E L ++ +Q G Y + Sbjct: 189 FDQT----TRMMAVYFHDPDNTPEAELRSLAGITLTPEKVPNLEAPLEHYDIQSGNYAVL 244 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 Y+G + +GT + E Y A P +L ++ +P+ Sbjct: 245 RYKGPYADMHRAYKWFFGTWLAESGYEVADQPPFEEYLNDPRQVA---PNDLLTDIYMPL 301 Query: 288 R 288 + Sbjct: 302 K 302 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 18/296 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + L ++E HLD+ L + +A AG SK+H R F+ G + ++ RL ++ Sbjct: 11 YARRVERTLAFIEAHLDEALPVARLAEVAGLSKFHFHRQFRAHVGVPVARFVARLRLRRA 70 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR----PP 117 A L + +LD+AL FDS + F RAF+ Q+P +RR+P+W + + Sbjct: 71 AQQLAFSPELRVLDVALSAGFDSPEAFARAFRAVQGQSPTAFRRAPDWPRWHAQFELPRA 130 Query: 118 LRLGEFTMPE---HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 L M + TL+ P+ + + + R+ W AP Sbjct: 131 LHHSHAAMSDAATPILRTLDPIPVAALEHRGPPA----TLMASVQRFIAWRRGSQAAPEP 186 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQD---QADGYVLTGHPVMLQGGEYVMFTYEG 231 G+ P ++ LA+ A + GG Y + + G Sbjct: 187 STRTLGVLYDDPESVAPEDFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRG 246 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + E ++ +Y +P R ++ E + ++ +P+ Sbjct: 247 STDAIGETVMGLYRDWLPGSGERVRDAP--LVFHYIERVPRVAEHEQV-TDVYLPL 299 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 200 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 109/295 (36%), Gaps = 23/295 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + +E LD+ L+L ++A A +S +H R+F +TG +GAY+R RL + Sbjct: 8 DWQRRVLAAMRLMEARLDEELALSDIAGAAHFSPYHFHRIFVGMTGETVGAYLRRLRLER 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL- 120 +A L +P+ +AL+ F+S + F RAF+ + +P+ +R++ P L Sbjct: 68 AAQRLCYGDQPVTTVALEAGFESPEAFARAFRAVYGVSPSAWRQASRERKGPPETPKHLP 127 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP-- 175 EF + E V PL+ V + +Q W A + Sbjct: 128 PAKEFVIMELDVVIKT-LPLMKVACVRHVGPYDQCEP--------AWASLCAKAGPLGLF 178 Query: 176 ---PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 G+ P ++ Y + + + G +Y +G Sbjct: 179 GPDTKFIGIGHDDPQITPPEKIR--YDACMTVPDSFAGTPDLPVASIGGRDYASAVVKGP 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 T + + G P +E Y + P L E+L+P+ Sbjct: 237 YTNLAPAYAWLCGVWGPDCGREFAMEPSMEIYL---NDPKTTPPDQLLTEILVPV 288 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 117/292 (40%), Gaps = 12/292 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + ++ ++ HLD+ L+L ++ A +SK+H R+F TG ++ YIR RL Sbjct: 1 MNYEYQLIKVIEFIGKHLDEKLTLAQLSDVACFSKYHFHRLFTAYTGLSLQQYIRWLRLK 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 ++A L + I++IA+ F+S + FTRAFK+ +P + P W + Sbjct: 61 RAAHQLIVDKDKTIIEIAINAGFESNEAFTRAFKQVCGVSPTKFISQPSWHGWEKSAYCL 120 Query: 120 LGEFTMPEHKFV-TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 M + + ++ L V E++ + +++ + P Sbjct: 121 SNRGKMTMNIVIKNMQARRLAVVEHHGHP--EKVGESINKLINWAKSQAMNLKPKAG-EA 177 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQD-QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 +G P + + + + + + +G V+ L G Y + +EG + Sbjct: 178 FGFAYDDPKTTEPEAFQFDLGITVPEQLKLEGNVI---EKRLPAGRYAVAMHEGSRDNID 234 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + I +Y +P I YY + A LR E + +++ Sbjct: 235 DTIYGLYRDWLPNSGEELGDLPCIFCYYNFDHEVAET---ELRTECWVFLKK 283 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 12/287 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + + ++ +LD L D +A A S +H R++ G A R RL + Sbjct: 5 NYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRLRLQR 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 ++V+L T PI IA + + S FTRAF + PA YR + F RP Sbjct: 65 ASVSLAQTDDPIAQIATKAGYASPAAFTRAFADAYGLPPATYRERGSHADF--RPGQLAT 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + + + P + + +I + Q G P + + Sbjct: 123 QQGGWSIEIQRFDAIPAFAI--RHDGPYIEIGKAFGMLFGQL--AARGALPE-RIEMIAV 177 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P+ + F ALA + + GG+Y + ++G + Sbjct: 178 YLDDPTAVPLERLRSF--AALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYN 235 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++GT +P + +E+Y ++ +P +L +L +P+R Sbjct: 236 WLFGTWLPQSDREADDRPVVEKYL---NSPQDTKPSDLLTDLCLPLR 279 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 25/295 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I+ +L ++ HL +PL + +A +S +H R+ + +GAYI+ R+ Sbjct: 10 DYQTRIQKVLEYIRQHLSEPLDVARLAEIGNFSVFHFHRIIRAYLNEPLGAYIKRVRMET 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L + PI D++ Q ++ +F+ AF+K F ++P +R + I+ + Sbjct: 70 AAQLLTYSHTPIHDLSYQMGYELPSSFSHAFRKYFGKSPQAFREQQQQ---FIKNQPQTT 126 Query: 122 EFTMP----EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL-----GNAP 172 T+P K + L L+ S + + + + W + Sbjct: 127 NTTLPGFVLTPKIIDLPAQQLL--------STRILGKYETSVIQKAWQKLMTYVFAQQLF 178 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 ++G++ P D + LA+ A L G+Y MFTY+G Sbjct: 179 YPTMEMFGISHDHPEIAGDILYQYEACVTLAKPVASE--GEFVVKTLPAGKYAMFTYQGS 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + V + + + R+ ++Y D L ++ +PI Sbjct: 237 YAQLDTVYNLVLKQWLFNSSYSLREAPIFDQYLNTPD---NTPEEELLTKIFLPI 288 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%) Query: 2 DQAGIIRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 + I ++ ++E HL ++ + L+++A+ YS++HL RMF V G + Y+ RRL+ Sbjct: 21 NNIEEIAAVIDYIEEHLMEEKMDLESIASIFHYSRYHLHRMFASVAGFPLHTYLTRRRLT 80 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L T RP+L+IAL +++Q++F+RAF+K F +P+ YR+ ++ ++ + Sbjct: 81 EAARLLVWTDRPVLEIALASGYETQRSFSRAFQKYFQHSPSRYRKKGDFFPLQLKYDVFR 140 Query: 121 GEFTMPEHKFVTLE-----DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 E + + +T+ + ++G S I + + T Sbjct: 141 REKLRGD-RIITVTMREAKELSVVGYCSSTKGGFAGIGRCWRRFHAKKDR---ISGCTNK 196 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGT 234 L G+N+ K +Q Y Q L G V+F++ G Sbjct: 197 EFLIGINDYSYYPCKGLDQVFRYIAGAEVMQEYTAPKGMQKFTLPAGRCVVFSFRGRNED 256 Query: 235 GVQEFILTVYGTCMPML--NLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q + +YG P + D RY D +L +P+ Sbjct: 257 SLQPVVEYIYGEWFPDSTCRFDEDRRYDFARYGEQLDE-----HGESEIQLWVPV 306 >UniRef50_P96662 Uncharacterized HTH-type transcriptional regulator ydeE n=105 Tax=Firmicutes RepID=YDEE_BACSU Length = 290 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 112/296 (37%), Gaps = 14/296 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + A A S++H +RMF + G ++ YIR RRL+ Sbjct: 1 MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ + ++DIA++Y ++S +F RAF+ P+ R + R L Sbjct: 61 LAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE----QISDFRHEMRYQFWHDFLGNAPTI 174 + ++ E ++G+ + + +I+ + + + + Sbjct: 121 TIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVA 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 P L + ++ E+ + A + + + +F G Sbjct: 181 PSGLISASTNFSEGRTEENGELDHYIGAA--TTKRCPDNFSRLEVPASTWAVFESIGPFP 238 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE +Y P N + +G +I + + + E+ IPI + Sbjct: 239 DTLQEVWGRIYSEWFPSSNYEQIEGPEI-----LWNEHKDVTSPSFKSEIWIPITK 289 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 113/287 (39%), Gaps = 9/287 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +LE HLDQPL ++ + +K +SK+H +F+ G + A + L + Sbjct: 3 NNHVRLEKVVRYLESHLDQPLVIEELLSKFYFSKYHFHHLFRAYYGEGVYAMRKRLLLER 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A ++ + +IA +++Q +F +A +KQF+ TP+ R A + Sbjct: 63 AARSIIYGVESMTEIAFSCGYENQASFNKAIRKQFSCTPSYIRHQKTVPALKGQQLTSFE 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + M V + T ++ S + + + M + + + + ++ G+ Sbjct: 123 DIKM-NINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLI----QPETIMIGI 177 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 + P+ D + + + GG+Y ++G + E Sbjct: 178 SHDDPNITLVDNIRYDACATIVTEM--ELPEGIDRKTILGGKYAKALHKGTYEKLSEAYS 235 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +P R E Y + +P NL+ E+ IPI+ Sbjct: 236 YLLLKWLPDSGFELRDQPCFEVYLNRD--PRRTKPENLKTEIYIPIK 280 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ ++D+L +E L++ LS+D +A S++H R+F G + IR RL Sbjct: 25 LNLNDRLQDVLANIESSLEEDLSVDQLAQLTHVSRFHFHRLFSATFGLGVMTLIRRLRLK 84 Query: 61 KSAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PP 117 ++A L I +I +DS + F RAF+K F P+ +RRSP++S + P Sbjct: 85 RAAFRLAYRAGDSITNIGYDCGYDSPEAFNRAFRKHFGLAPSDFRRSPDFSVWAQHYDPI 144 Query: 118 LRLGEFTM----PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 L M P+ + + PL + + + + W G +P+ Sbjct: 145 QTLRNQHMPAPLPDVTVIEMPAIPLAVMPHRGNPA----RLSHTLQAFIAWRKRNGLSPS 200 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + L P++ DD+ + + + + G Y +G Sbjct: 201 -HSRTFNLVYDDPNEVTDDDYRFDLACEIQGELPADF-EGMESRTIPAGRYARARLQGSD 258 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + ++Y +P D + + ++ +P+ Sbjct: 259 DALERLVHSLYAEWLPSSGY---DLADFPLLFERVRFFPDVSEHEMITDVYLPL 309 >UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EE80 Length = 285 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 110/291 (37%), Gaps = 15/291 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + + ++E ++ + + A A S +H QRMF +T + YIR RRL+ Sbjct: 1 MDWVQRMNEAIGYIEANITEEIDYAEAAKVACCSAYHFQRMFPFITDVTLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L+ + ++D+AL+Y +DS + F RAF+ TP R++ R + Sbjct: 61 LAAYELQNSDIKVIDLALKYGYDSPEAFARAFQNMHGTTPTAARQAGTKLKAYPRISFQF 120 Query: 121 GE--FTMPEHKFVTLEDTPLIGVTQSYSC--SLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 ++ ++ ++G + S + E++ + + D L N Sbjct: 121 SMRGAAEMNYRIEEMKAFSVVGFKKQVSTQRAYEEVPFLWKDAHAEGIFDKLWNYRAHEH 180 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + G+ D + Y ++ + + +F EG G+ Sbjct: 181 PIRGILGVCADGDYGKNEYFDYIMSVVSTHNPPEPMVLRHF--PAAAWAVFELEGDPKGI 238 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 E +Y +P IE Y P P + EL IP+ Sbjct: 239 AEMWKRLYTEWIPSHAYDLAPLPAIECYLP---------PDEYKNELWIPV 280 >UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=Bacteria RepID=Q18AY3_CLOD6 Length = 288 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 116/303 (38%), Gaps = 31/303 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E +L+ + A A S +H QRMF + + YIR RR++ Sbjct: 1 MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF--GIRPPL 118 K+A L+ + IL+++ +Y +DS +F RAF+ +P+ R + + Sbjct: 61 KAAFELQNSNIKILELSEKYGYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA------- 171 + +++ V + ++G+ +S + +E+ E + W + N Sbjct: 121 YVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEE----CFEKVPKLWAKCIKNGTIDKLSE 176 Query: 172 --PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 P L G++ S+ D Y A D+ + H ++ G + +F Sbjct: 177 LINNEPCGLLGVSVCTNSKGLD------YYIAAPTDKP--VLEDTHEYLIPSGTWAVFEC 228 Query: 230 EGL---GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 +QE + +P DIE Y + E+ IP Sbjct: 229 VSPMPNALAIQELQKRIITEWLPSSGYVYANLPDIELYPN-----GDINAPDYTTEVWIP 283 Query: 287 IRR 289 I++ Sbjct: 284 IQK 286 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 108/291 (37%), Gaps = 9/291 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E +++ LS++ +A AG+SK+H R+FK + ++ Y+ +L + Sbjct: 9 EYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRYVNRLKLER 68 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 + L T I DIA + F F+R FK + +P+ YR + +R P Sbjct: 69 ATHLLTYRTDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRGIPQY 128 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWH-DFLGNAPTIPPV 177 + + VT ++ + + + + E+++ +M + +H N Sbjct: 129 NECKKVRGNVEIVTADNINVAYI--RHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDT 186 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + +D D++ +++ G+Y + +E + Sbjct: 187 KVLTIYHDHHEFTEDYHLRTSLCVTISDESTVETNDVGIMVIPSGKYAVGHFEICQDEYK 246 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG +P R E Y + ++ +PI Sbjct: 247 GAWDFIYGEWLPNSGYKPRDSYPFEVYR---NDPKQHPKHKHIVDIYVPIE 294 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 113/282 (40%), Gaps = 14/282 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + L+ +E L++ L+L ++ + S H+ R+F+ TG +I +Y+RARRLS +A + Sbjct: 4 LDKLIWQIETDLNKDLTLTVLSDRCAISTHHMCRLFQLSTGLSIMSYVRARRLSMAADTI 63 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 IL AL + S + FTRAF F P+ R++ S+ + PL++ Sbjct: 64 ARHDGDILTAALDAGYGSHEAFTRAFANYFNALPSTVRKARSTSSLDLMEPLKMKNDMFV 123 Query: 127 EHKFVTL-EDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 E + + + V S CSLE + W F + V+ G Sbjct: 124 EVQPPEMRRADAFMVVGLSTPCSLE-----NNSTIPALWQRFNLRESEVEEVVSG-AAYG 177 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 D+ Y + +A + L Y +FT+ G + + + T++ Sbjct: 178 VCSAADEAGNCTYLAGV---KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTVYTIWN 234 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P L D ERY D + E+ IP+ Sbjct: 235 KALPEAGLKTADSPDFERY----DQRFNPETGRGSVEIWIPV 272 >UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Marinomonas RepID=A6VR73_MARMS Length = 306 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 122/307 (39%), Gaps = 27/307 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D+ I +L ++ +LD+ + + ++A K+ +S+W QR+F TG ++ YIR RLSK Sbjct: 5 DRLTRIEKVLDYIHENLDESIHVSSLAEKSCWSRWQFQRVFGQATGLSVAQYIRELRLSK 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL- 120 +A L + +DIA+Q FDS+ +F+RAFK+ F TP YR+ + +G+R PL+ Sbjct: 65 AAELLLSSKNRHVDIAIQCGFDSEISFSRAFKQMFNCTPRDYRQRGKR--YGLRTPLQYR 122 Query: 121 --------GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 T + + + + + G + +F E Q W + Sbjct: 123 CPNKAQTETPKTFTQIRIESRDGFHIQGRSAWIRGLFSASPNF-SERVPQLWSQVISEVK 181 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYV-----------LTGHPVMLQG 221 T+ + ++ Y + V + Sbjct: 182 TVTKGYRPIGIIDTQDHAQHPDQMLYWAGYLEPINTSSPTIFSGANPFNTTPLDTVRVPL 241 Query: 222 GEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC 281 EY + G + V++ + +P N +G ++E Y P D + Sbjct: 242 QEYAVIPVYGKSSAVEKALEWFIYQWLPESNYYGVQGYELEVYEPDYDPSSSKS----YM 297 Query: 282 ELLIPIR 288 E +PI+ Sbjct: 298 EYWLPIK 304 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 15/285 (5%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 ++ ++ +LD+ L +A A S H R+++ G +I A ++ RL ++A L Sbjct: 22 RVIEYIYANLDEDPDLATLAEVAALSPSHWHRIWQATYGESIFATVKRLRLHRAAGDLTY 81 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF-----GIRPPLRLGEF 123 T + +A + + S + F+R+FK+ + Q P YR S F G P + G Sbjct: 82 TDLALPVVAKRAGYGSLEAFSRSFKQAYGQAPGTYRTSLTSHRFQPANGGAPLPKQKGPA 141 Query: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 M + TL L + +E F +G + + Y Sbjct: 142 LMHDVAIKTLPSETLAVLPHR-GAYMEIGKAFEKLFGILVSRQVIGQIGAMKALYY---- 196 Query: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 + P+ +D+ + + L +GG+Y + Y+G ++ + Sbjct: 197 SDPTHVAEDDLQSAAGAVIGDGFPVEAPLETRET--RGGDYAVLRYKGPYADMKWAYEWL 254 Query: 244 YGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 YG + +E Y + P +L ++ +P++ Sbjct: 255 YGEWLTQSGREPDDAPCLEVYL---NNPRDTAPADLLTDICLPLK 296 >UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=Q24TQ4_DESHY Length = 305 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 16/293 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L + E HL + + + VA +A S +H QR+F + G ++G YIR RRL+ Sbjct: 15 MDWITGIQRSLDYTEAHLTEKIDYEMVAKQAYSSAFHFQRVFSILCGFSLGDYIRMRRLA 74 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-IRPPLR 119 ++A L T I+ IAL+Y +D+ ++F+RAF + TP RR +F + L Sbjct: 75 RAAEDLLCTDEKIIHIALKYGYDTPESFSRAFLRFHGITPTEARRGGTVKSFFRLSVKLI 134 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 L + +++ + +I + + D E FW+ + Y Sbjct: 135 LSGGSTMDYRIEKKDAFKIICKKKQVNKPQ---GDSATEEISAFWNQCTKDGTMEDICKY 191 Query: 180 GLNE-----TRPSQDKDDEQEVF-YTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 G + D F Y + + + + + +F +G Sbjct: 192 GRFDGLGGVLGICFSGDMADAAFPYGIGAEYNGVPLHGEGLEILEIPPYTFAVFQCKGPM 251 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 + + P N G ++E Y A CE+ I Sbjct: 252 PEVFKTTYQRIVTEFFPQSNYQYGNGVELEVY-----PSADVSNPEYTCEIWI 299 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 106/288 (36%), Gaps = 16/288 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + + +LD PL+LD++A A S++H R ++ +TG + +R RL + Sbjct: 9 DYRERLERVRKHIHENLDGPLNLDDLADIACLSRFHWHRTYRGLTGETVWQTVRRLRLHR 68 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L I I + + + + F++AFK + P YR + P Sbjct: 69 AAAELANGTLAIEQIVARSGYTNSRAFSQAFKADYGLPPFRYRAEGGHRRY--ENPEWQE 126 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 TM + + + L+G ++ +I + + L + Y Sbjct: 127 SDTMYDVRIEEMGPAKLVG--FEHTGPYTEIGSAFEKFYAEVGPANLASQAMAIAAAY-- 182 Query: 182 NETRPSQDKDDEQEVFYTTALAQ--DQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 + P +E ++ D A G+ + G Y + ++G + + Sbjct: 183 -FSDPDITAPEECRSLAGMIVSPGLDVAGGF----DRFDILAGRYAVLQHKGAYAELPKA 237 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 YG + + +E+Y ++ P L E+ +P+ Sbjct: 238 YQWFYGAWLADSGESAAAAPAVEKYL---NSPMNTAPAELVTEICMPL 282 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 126/294 (42%), Gaps = 19/294 (6%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + +R +L ++ HLD+ LS++ +AA A +S+ H QR F + G + AY++ R+ + Sbjct: 10 NYHARMRRVLDHIDAHLDEDLSVEVLAAVAAFSRHHFQRQFSGLYGIGVAAYVQLARMKR 69 Query: 62 SAVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-IRPPL- 118 ++ L + +L IAL ++ + F+RAF++ F Q+P+ +RR+P W + + PL Sbjct: 70 ASYRLAFRDQDGVLGIALDSGYEGPEAFSRAFRRLFDQSPSSFRRAPRWEPWHAAQSPLV 129 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + FT + + V DTP+ + +L R+ W G P + Sbjct: 130 QARRQTMTFTDDDVRIVDFPDTPVAVMRHEGDPALLG----DTIRRFIAWRRAAGLPPRV 185 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 + + P ++ + A A+ ++ +T ++ GG + G Sbjct: 186 SA-TFNVFHDDPDDTPAEQYRLDLCAATARVASNPDGVTS--GVIPGGPCAVLRQIGSSD 242 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI-NLRCELLIPI 287 ++ +YG +P R ++ + D P +L +P+ Sbjct: 243 DLRAASRFLYGEWLPRSGRELRDAP----FFAQRVSFFPDVPEHEAVTDLFLPL 292 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 21/296 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++WLE H+++ +SLD++AA+A +S +H R+F+ V G ++ AYIR RL K+ Sbjct: 20 YRMRIMRAILWLEEHMNEAVSLDDMAAQAHFSPYHFHRIFRGVAGESVMAYIRRLRLEKA 79 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 L + + DIA +++ + F+RAF+ QF +P+ RR G+ P LGE Sbjct: 80 VHRLAYGSASVTDIAFDAGYEAHEAFSRAFRAQFGMSPSALRRHVR--KAGMIPAGVLGE 137 Query: 123 FTMPE-HKFVTLEDT----------PLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA 171 M + TLE P+ ++ Q + + L A Sbjct: 138 SAMTKVVAGFTLESLGLEPEVKVLAPVRVAFVRHTGPYAQCEAAWKTLCDWAFPQGLVMA 197 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 T G+ P D+ ++ + + + V +GGEYV ++G Sbjct: 198 QT---QFMGICYDDPEVTAPDKIRYDACISVPDNVQAEHPVAIREV--EGGEYVCAVWKG 252 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 TG+ + G R +E Y L E+ +P+ Sbjct: 253 PYTGLTNAYAALCGQWGGRSGREFRAAPSVEVYLNDC---TSTPEQELLTEIRMPL 305 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 193 bits (491), Expect = 5e-48, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 108/288 (37%), Gaps = 13/288 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I + ++ GHLD + + +A A S +H R+FK + G + A+I R+ Sbjct: 8 DYTQRINKVAEYINGHLDTSIKIKTLANVANLSDFHFCRIFKALKGESPIAFIARLRIET 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A LR + + +IA +++ + ++AFK Q+ TP YR + + + ++ + Sbjct: 68 AAQLLRYSTLSVEEIAFNIGYETPASLSKAFKNQYGITPTQYRTNRD--IYIMKKEINNP 125 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL-GNAPTIPPVLYG 180 E + K V LE LI V + ++ Q W T Sbjct: 126 EVVLKAPKIVELEPKSLIYVALTGEYGTLNY----NKAYEQLWGVVKSQKLFTKGIESIC 181 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 ++ P + Q +LA + L GG+Y +F Y+G T + Sbjct: 182 VSYDDPKITEASLQRS--EVSLAIHKPAKPSGEVSCKTLAGGKYAVFFYQGSYTQLSSVY 239 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + R E+Y L+ E+ IP++ Sbjct: 240 DAA-MRWVVDSEYEVRDEPMFEKYLNDC---RRTPEGKLKTEIYIPVQ 283 >UniRef50_A6LX85 Transcription activator, effector binding n=2 Tax=Bacteria RepID=A6LX85_CLOB8 Length = 297 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 125/307 (40%), Gaps = 30/307 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++E HL + ++ +NVA + S ++ R+F + G YIR R+LS Sbjct: 1 MSFGKSLQSAIDYMESHLLEKINYENVAKEVHMSCYNFHRIFSLMAGITANEYIRNRKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 + L+LT I+D+A +Y +++ ++F +AF + +P L +R ++ Sbjct: 61 LAGQELQLTDSKIIDVAFKYGYETPESFAKAFSRFHGVSPKLAKRKGTQLCLFNPLAIKI 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSL------EQISDFRHEMRYQFWHDFLGNA- 171 L ++ I +++S + I DF E + + + N Sbjct: 121 ILEGGNTMNYRIEETGKQRFIAKVRAFSNEIMNEAGNHDIPDFWGECHKEHLVEEIRNMR 180 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQG--------GE 223 P LYGL S K +E Y + D+ D ++ ++ +G Sbjct: 181 PDGKKDLYGLC----SPTKKNETTFDYGIGVLIDE-DTHIDNEEAMLKKGYRIWEVDSAT 235 Query: 224 YVMFTYEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCE 282 YV+F G G + E + +P + + + D E Y + L CE Sbjct: 236 YVVFKCYGNNGDCISEMWSRFFKEFLPQSDYEQTEDTDYEIYLNEGEPG-------LFCE 288 Query: 283 LLIPIRR 289 L IP++R Sbjct: 289 LWIPVKR 295 >UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I706_CLOCE Length = 284 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 107/291 (36%), Gaps = 10/291 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L +S + A A S +H QRMF +T + YIR RRL+ Sbjct: 1 MDWLNRMNKAIDYIESNLADKISYNKAAQIACCSTYHFQRMFSSITDVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ + ++D+A +Y ++S + F+RAFKK P R + + Sbjct: 61 LAAFELQTSDIKVIDVAFKYGYESPEAFSRAFKKLHGVMPTSARDIGISLKAFPKMTFSI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + T ++ E + GV S E+ D + D +A Sbjct: 121 SIKGDTEMNYRIEQREAFNVFGVYTEISTDQEKAFDQVPLFFKRCDDDGTTDAINNLLGR 180 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 + N T + E Y + +++ + +F T Q Sbjct: 181 FDDNYTISALYDYSETTFKYMLCNYLPKDLSIPSRFTTLVVPPSTWAIFDVPECET--QS 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 ++ P +G E YY + N CE+ IP+++ Sbjct: 239 IWKRIFTEWFPTSEFEAIEGIQFEMYY------GLAKHKNGFCEIWIPVKK 283 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 119/300 (39%), Gaps = 22/300 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ HLDQPLSL+++A + S+W LQR+F+ TG + Y+R +LS +A Sbjct: 8 SRIERVLNFIHTHLDQPLSLEDIAEHSQCSRWQLQRIFQQQTGLNVAQYVRELKLSIAAD 67 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG--- 121 + +LDIA + F+S+ +F+R+FK+ F +P Y+R G+R P+ + Sbjct: 68 KVLSGQSRMLDIAYELGFNSEVSFSRSFKQLFGVSPREYQRRGIR--VGLRNPIAIRPEF 125 Query: 122 ------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + T + + + G++ L DF + + F +P Sbjct: 126 TANKKIDTTFLQTHIEHRQAFTVYGLSSPIKGVLSDAPDFSSIVPDTWLRLFDIIDGVLP 185 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALA---QDQADGYVLTGHP----VMLQGGEYVMFT 228 L K ++Q + Y L + + L + + EY + Sbjct: 186 LAGNMLGVVDTLSLKTEQQSIRYWAGLELDAEQRQSLQTLLTEEKLCSLTIPSQEYAVVA 245 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Y G + + + +P G ++E Y + E +PI+ Sbjct: 246 YSGTVNEFSQLVEWLICDWLPESGFVSLDGYELESYGKITSTITDLKH----MEYWLPIK 301 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 112/320 (35%), Gaps = 38/320 (11%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E HL + LSL+ +A A +S +H R+F + G + +I+ R+ K Sbjct: 15 EYICRINRAIDYIETHLSEKLSLETIAKAAFFSPFHFHRIFHGLVGETLNRFIKRLRVEK 74 Query: 62 SAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L + + DIAL F + T +RAFK+ F+ +P +R++ + I R Sbjct: 75 AARMLADNPKQTVSDIALDCGFSTTSTLSRAFKETFSMSPTAWRKASSATQSKICQTFRK 134 Query: 121 G---------------------------EFTMPEHKFV-----TLEDTPLIGVTQSYSCS 148 MP+ + + + + V + Sbjct: 135 THQPIGSARKNYVIHTSYFDRASHHQTWRIEMPKQNEIQVTVKDMPEMTVAYVRHIGAYK 194 Query: 149 LEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD 208 + + W G + + P + DEQ++ + ++ Sbjct: 195 SNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDP--NITDEQKLRTSVCISVPPNT 252 Query: 209 GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE 268 + + GG+Y + +E + + ++ +P E Y Sbjct: 253 EVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSAWLPESGYQPDDRLSYEIYLNNP 312 Query: 269 DAKAGDRPINLRCELLIPIR 288 + + I E+ +P+R Sbjct: 313 NTHPEGKHI---VEICVPVR 329 >UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC4194 Length = 277 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 119/292 (40%), Gaps = 19/292 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + + ++E +L+ + + A S +H QRMF + G +G YIR R+++ Sbjct: 1 MEWIERLNEAVEYIEMNLENKIDYTKASKIACCSVYHFQRMFSYIAGVTLGEYIRRRKMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PL 118 K+A L+ + IL+++ +Y +DS +F+RAF+ +P++ R + L Sbjct: 61 KAAFELQRSDIKILELSAKYGYDSPTSFSRAFQSIHKISPSIARNKNITLKTYPKLTFSL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + E+ + ++G+ + +E+ FW++ + N + Sbjct: 121 SVKGEEELEYYITEKDSLDILGIGKKIELDMEK----NFFEIPDFWNENIKNKNIEKLLK 176 Query: 179 YGLNETRPSQDKD-DEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGV 236 Y + + +EV+Y A+ D+ + H + GG + +F Sbjct: 177 YNAKDKNILGVSLYNNKEVWYYIAVFNDREGEDGMERHK--IPGGTWAVFRCSSPFLENS 234 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Q+ Y +P T + DIE Y P + K E+ I+ Sbjct: 235 QKIYRRFYTEWLPHSGYTYGETADIEIY-PDSNEKD--------MEIWFSIK 277 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 106/292 (36%), Gaps = 23/292 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ ++++ + L+ +A A +S +H R+++++ + +R RL + Sbjct: 10 YRDRILAVVDYIWRNIERDVELNTLADVAHFSPYHFHRIYREMMHETVSTTVRRLRLHYA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + IA + S + F+RAF + + TP+ YR+ R PL + Sbjct: 70 ACQLLRTNHSVETIATTLGYGSGEAFSRAFSRAYTVTPSAYRQQ--------RSPLPEAK 121 Query: 123 FTMPEHKF------VTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 +P +F V +E + + ++ I ++ N Sbjct: 122 MALPSRRFYAMKHTVDIEKFNKVELGGLAHQGDYLDIGAVFEKVFVSAGSKQFLNEH--- 178 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 +G+ P+ L Q + L+ G + + T+ G + Sbjct: 179 SRSFGIYYDDPTSKDKSALRSHACVTLNPQQVKE--AGLDYLTLEAGNHAVLTFTGPYSE 236 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +++ YG +P E Y + P L ++ +P+ Sbjct: 237 LEQAYEWFYGEWLPQSGYQLADRPPFEEYL---NDPKTVPPSELLTKIYLPL 285 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 25/299 (8%) Query: 1 MDQAGI--IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 M Q I I D+L ++ + + LS +A A YS+ H R+FK V G +I YIR R Sbjct: 6 MSQQHISRINDVLYFIHQDISRELSAKALADVAAYSEQHFHRVFKQVVGESIHQYIRRTR 65 Query: 59 LSKSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW--SAFGIR 115 + +A L T +LDIA + F S +F+RAFK F+ P +R ++ Sbjct: 66 MEYAANQLMFDTRSSVLDIANKCGFSSVSSFSRAFKATFSMAPGEWRYHDLHISDKPYLK 125 Query: 116 PP------LRLGEFTMPEHKFVTLEDTPLIGVTQS-YSCSLEQISDFRHEMRYQFWHDFL 168 P R+ + T+PE K + + V Y+ S++ + + W + Sbjct: 126 DPEVAAGYHRVAKRTLPEPKITEVPERMAAYVRHVGYNRSIK-----NAWLILKAWANSE 180 Query: 169 GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 G + V +GL+ + P+ + D+ Y +A D+ Y + +++ GG + +F Sbjct: 181 GRSFE---VQFGLHHSNPAWVELDKCR--YVACIAIDKPLKYRGVVNQMVIPGGLHAVFR 235 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G+ + I V +P R Y+ + + +PI Sbjct: 236 LHGVYGELLPQISMVLEKWLPASGFKLRSTPAYVHYHS---NHFVNESEAFELDFYLPI 291 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 122/290 (42%), Gaps = 13/290 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++E HLD+ L++ ++ +A +S++H QR++ +TG ++ +I+ RL K+ Sbjct: 9 YVEQINKVQDYIENHLDESLTVKRLSQRANFSEYHFQRIYGSMTGESLYGFIKRIRLEKA 68 Query: 63 AV-ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE--WSAFGIRPPLR 119 A L RPI+DIA+ F +Q +F +AFK ++ + YR++ + L Sbjct: 69 AHILLFDKDRPIIDIAMSVGFSNQTSFAKAFKSKYGVCSSSYRKTNGTVSETDFVNKYLD 128 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIPPV 177 + T+ K + + + Y+ ++ S+ + + W D + Sbjct: 129 NQDMTIDPLKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWAD-QRRLISSTSR 187 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + + ++ DE ++ + ++ D+ + L G+Y + ++ + Sbjct: 188 WFVIYHDF--GNETDEDQLRLSVCMSVDRNLAVSGDIGILNLHEGQYAVGSFMVEPSEYD 245 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +YG +P +E Y K ++ E+ IPI Sbjct: 246 KAWYYMYGKWLPTSGHKPDDRFSLEHY-----PKVEEQGDKRLVEIYIPI 290 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 190 bits (482), Expect = 6e-47, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 123/298 (41%), Gaps = 31/298 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + L ++E LD+ + +A A S++H RMF ++G ++ YIR RRL+ Sbjct: 1 MDWLERMNNALEYIENSLDEDIDYKKIAKAASCSEFHFSRMFSSISGVSLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PL 118 +A ++ I+D+A++Y + S F+RAFKK TP+ R + + Sbjct: 61 LAAFEIQKGDIRIIDVAIKYGYVSSDAFSRAFKKMHGITPSNARNKGVQLKAFPKISFQI 120 Query: 119 RLGEFTMPEHKFVTLE-DTPLIGVTQSY--SCSLEQISDFRHEMRYQ-FWHDFLGNAPTI 174 + T E++ L+ + ++G ++S S + ++I + + F + + + Sbjct: 121 SIKGDTEMEYRIENLDFELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWED 180 Query: 175 PPV----LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV-MLQGGEYVMFTY 229 P L G+ + + E Y + + DG V T ++ + +F Sbjct: 181 PKCKLESLLGVCGKDAAITDE---EFSYFMGV---RYDGEVPTDMETLVIPVSTWAVFP- 233 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +Y +P IE YY +P + EL +P+ Sbjct: 234 -----NIVDAWKRLYSEWVPTSKYELANLPCIECYY-----GPKHKPRH---ELWVPV 278 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 190 bits (482), Expect = 6e-47, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 117/321 (36%), Gaps = 45/321 (14%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +++ H + LSLD +AA A +S +H R+FK +TG + +I+ RL Sbjct: 35 EYQRRVNRVIDYIQAHRAEDLSLDTLAAVAAFSPFHFHRVFKSMTGENLREFIQRTRLET 94 Query: 62 SAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR--------------- 105 +A L IL+IAL+ F S F RAFK++F + + +R Sbjct: 95 AASHLVQRPHADILEIALENGFSSASAFARAFKERFGMSASAWRNGGATDERNARQADRK 154 Query: 106 --------------SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ 151 +P+ A R E + TL + V E Sbjct: 155 PGQVERNPCKAAACAPDQDASSSGTDARQDEEEIMNVTVKTLPSYHVAYVRNVGPYGPEG 214 Query: 152 --ISDFRHEMRYQFWHDFLGNAPTIPPVL-YGLNETRPSQDKDDEQEVFYTTALAQD-QA 207 ++ +R+ D P + + P + + + + QD +A Sbjct: 215 SVGEAWQRLVRWASARDL-----WTPDRICLSIAHDNPKVTEPAKCRLDAAIVIPQDFKA 269 Query: 208 DGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPA 267 DG V + + GG+Y + G + ++G +P E Y Sbjct: 270 DGDV---NVTDIAGGKYAAGAWVGDARAIGSAWDQLFGKWLPESGDQPDHRPCFELYR-- 324 Query: 268 EDAKAGDRPINLRCELLIPIR 288 + N RCEL +P+R Sbjct: 325 -GEFHDPKTHNFRCELCLPVR 344 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 190 bits (482), Expect = 6e-47, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 34/313 (10%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +++ HLD + L +A A +S +H R+F G +G Y+R RRL Sbjct: 13 EYTQRMNRVMDYIDSHLDGDIDLAALADVAHFSPFHFHRLFAAWMGATLGDYVRRRRLEV 72 Query: 62 SAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSA--FGIRP 116 +A+ L T +L++AL F S + F RAFK +F Q+P+ +R + W+A G+R Sbjct: 73 AALQLAGNTRISVLEVALGVGFGSGEAFARAFKLRFGQSPSAWRAATPQRWAAELRGVRK 132 Query: 117 PLRLG---------------------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDF 155 P + F+ + TL + + + ++ F Sbjct: 133 PHQAESNLDQAGHSANGHHDAMSDSQSFSSMQVTLTTLPAVRVAYMRHVGPYGVS-VNQF 191 Query: 156 RHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGH 215 + W +G P + + D + Sbjct: 192 WTGT-FLPW--CFAQGLLPGASSFGRGLDDPHITAPEHCRYDAMVQVPDDFVARSPASM- 247 Query: 216 PVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDR 275 L GG Y + +EG + + +P + E + DA+ Sbjct: 248 -ATLPGGRYAIAPFEGTVPQLTVAWTELLRDWLPASGMKLDGRPLFE--HMPPDARYDAA 304 Query: 276 PINLRCELLIPIR 288 ++CEL IP++ Sbjct: 305 TGVMQCELCIPVQ 317 >UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I6N3_9CLOT Length = 288 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 21/295 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L ++E +L + + L +A +AGYS +H R+FK + G ++ Y+R RR + Sbjct: 4 MCYINSIKKALNYIENNLQEDIDLSAIAKEAGYSLYHFHRIFKGIVGDSMKDYVRKRRFT 63 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L T + I++I ++Y ++S++ F+RAF+K + + P+ RR + + IR P+ + Sbjct: 64 EAAKELVYTNKSIVEIGIKYGYESREGFSRAFEKVYGRNPSEVRR--DNLLYFIREPINV 121 Query: 121 GEFTMPEHKFVTLEDTPL-------IGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 ++ M + K T TPL V + + + + + +Q W++ + Sbjct: 122 -DYMMFQLKLTTEGLTPLYRNLSERYVVGKKWKVKADGSNLQDIPLLWQKWNNEKESEKI 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 I +E Y + + L+ Y +F G Sbjct: 181 INRK--CADEIMGICIFSQGNVFDYMIGHEVNTMEYVPENMVIYRLEPSLYAVFRVIGPI 238 Query: 234 -TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 VQ+ +Y + R DIE YY E L +L IPI Sbjct: 239 TESVQKTWDYIYSVWLSESKYKHRNIDDIEYYYYTEG--------ELVADLYIPI 285 >UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=Enterobacteriaceae RepID=B2K4J9_YERPB Length = 297 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 133/256 (51%), Gaps = 8/256 (3%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDI 76 +L++ +LD+VA +GYSKWHLQR FK + G + +YIR R L+++AVALR++ +PI+ I Sbjct: 19 NLEKRPTLDDVAKISGYSKWHLQRKFKSIVGLQLASYIRGRVLTRAAVALRISRKPIITI 78 Query: 77 ALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDT 136 + + FDSQQTFTR FKK+F TP +R+ W G+ P E PE K VTL Sbjct: 79 SDELGFDSQQTFTRTFKKRFGVTPNSFRQMNHWDVQGMIPRFGFYENYTPEIKQVTLPGK 138 Query: 137 PLIGVTQS-----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKD 191 L+G T+ Y+ + Q S M+ + DF +Y L + + Sbjct: 139 ELVGFTRRLDFEEYNGCVVQRSSC-MAMKDEILLDFFKEVNFACQRIYSLFSVKDVDGQQ 197 Query: 192 DEQEVFYTTALAQDQADGYVLTGHP--VMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMP 249 ++ V+Y+TA+ +++ + + + GE++ +++G +F ++ +P Sbjct: 198 GQKSVYYSTAIDKERKHEIQGSREIDHIAIPEGEFLSISHQGSAKECVKFATYLFNNVLP 257 Query: 250 MLNLTRRKGQDIERYY 265 L +G ++E Sbjct: 258 KLRDEVGRGIEMEVIE 273 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 56/302 (18%), Positives = 107/302 (35%), Gaps = 25/302 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + + ++E +L + D VA KA S +H QRMF +T + YIR RRL+ Sbjct: 1 MNWLDKMNEAICYVEDNLAGEIDFDEVARKACCSTYHFQRMFSFITEVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP--L 118 +A L+ ++ ++++A +Y ++S FTRAF+ TP R R + Sbjct: 61 LAAFELQNSSVKVIELAFKYGYESPDAFTRAFQNLHGVTPTSARDMGVQLKAYPRISFHI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA------P 172 + ++ E + G+ L ++ ++ +FW + + Sbjct: 121 SIKGDVEMNYRIEEKESFSVFGI----DTILSKVDGECYKRIPEFWLKSIEDGTVERILK 176 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 + +++ Y + G + + + +F E Sbjct: 177 AADDGKQNMMLNAAMYGHENDGTYHYMLC-HRIPQKGIPEGFVQLDIPKLTWAIFPTEEH 235 Query: 233 GTG-----VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 VQ +Y P + E YY D K E+ IP+ Sbjct: 236 TEDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVGDNK-------YIVEIWIPV 288 Query: 288 RR 289 + Sbjct: 289 YK 290 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 116/290 (40%), Gaps = 14/290 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + ++ HLD L+++ + A +SK+H R F G + +++ RL ++ Sbjct: 7 YEKRMLAVCDYIYKHLDDDLTVEALCDVACFSKYHFHRQFTHFMGVGVFKFVQILRLKRA 66 Query: 63 AVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLRL 120 + L T I+DIA+ +FD ++F+RAFKK + Q+P+ +RR P+ G+ L Sbjct: 67 SYELVFTKEKRIIDIAMSAKFDHPESFSRAFKKAYLQSPSEFRRHPDLEKLGLHFHKLER 126 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCS--LEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 V + T + + S S +E ++ FR W G +P Sbjct: 127 QLEPYMTVDIVHFDTTKIALLKHRGSPSRIMESVAIFRE------WRKSSGLSPITKSRT 180 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 + + P+ ++ + ++ D + L GG Y + + G + Sbjct: 181 FNIIYEDPAVVVAEDFRCDLAAEVMKEVDDNEYGVINS-TLAGGRYAVVRHFGPYDSISR 239 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +YG +P +Y+ A L ++ +P++ Sbjct: 240 CLYFLYGEWLPDSGEELGDAPCFFQYHNHFPEVAEH---ELITDVYLPLK 286 >UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EC6 Length = 292 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 122/298 (40%), Gaps = 16/298 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ A I++ + ++E ++ + L +++AA+A S ++ Q++F + +G YIR RRL+ Sbjct: 1 MNWAEGIQNAINYIENNITEELDNNSIAAQACCSSYYFQKIFSLLCDMTLGEYIRNRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP--L 118 + L T ++DIA++Y + + ++FTRAF +P+ R++ R L Sbjct: 61 LAGSELISTDIKVIDIAMKYGYSTPESFTRAFTLFHGVSPSEARKNASSLRSFSRLTVEL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ-----ISDFRHEMRYQFWHDFLGNAPT 173 L ++ + +I + + + D + L + Sbjct: 121 SLKGGKTMNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMAS 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM-LQGGEYVMFTYEGL 232 +YG+ + D++ + A+ + D G + + ++ +G Sbjct: 181 DREFIYGICYGNGKETYDEDTFEYSIAAICAE--DTVAPEGFRISHIPARTWLAVECQGT 238 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 VQ+ + + P T DIE Y P+ D A + + E+ +P+ + Sbjct: 239 CPETVQQQWREMCASFFPSSGYTPTYEMDIEVY-PSGDPSA----PDYKFEIWVPVVK 291 >UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RHZ9_9MOLU Length = 280 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 114/296 (38%), Gaps = 24/296 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E HL + + + +A AG +H Q+ F +T ++ YIR RR+S Sbjct: 1 MEWIERLNTTIEYIENHLTEKIDYEQLAKIAGCPSYHFQKTFLYMTNISLSEYIRKRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW--SAFGIRPPL 118 +AV L+ I+DIAL+Y ++S F RAF+ P+L R+ S ++ Sbjct: 61 LAAVDLQTGEDKIIDIALKYGYESPTAFNRAFQAVHGIAPSLVRKKNVQIKSFPALKFTF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGV----TQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPT 173 + + + ++G+ ++ + QI + + + Sbjct: 121 SIQGLDELSFRIEKKDSFKILGISSLLSKELLENFVQIPKQWDKALNDGTLNQLYRLNNQ 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 P L G+N + + Y A++ + H + + +F+ G Sbjct: 181 TPLGLLGVNIHQHEDWR-------YFIAVSSTNHNQNFEEYH---IGSATWAIFSGHGTN 230 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE V +P DIE Y A+ P + E +PI + Sbjct: 231 RTLQELQCRVITEWLPTSGYEYANIPDIEVYLKAD-------PNDAIYEYWLPIIK 279 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 104/300 (34%), Gaps = 24/300 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I ++E +L + LSL+ VA +A +S +H R++ +TG ++ +I RL K Sbjct: 6 EYRRRINRAQDYIEQNLGRSLSLEEVAQQAAFSPYHFHRLYTAMTGESLYQFILRLRLEK 65 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR---------------R 105 +AVA+ R I +IAL+ F S TF RAFK +F + + YR R Sbjct: 66 AAAVAVACPHRSITEIALETGFSSPATFARAFKAKFGVSASEYRGRKDRKAVGKDRNALR 125 Query: 106 SPEWSAFGIRPPLRLGEFTMPEHKF--VTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF 163 +A RP L T P L + + + RY Sbjct: 126 KDRNAAASTRPYLGEVMNTFPAQSINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCA 185 Query: 164 WHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 W G + + P +DD+ + +A + + + G+ Sbjct: 186 WAGPRGLLGAPNSEMVCIYHDNPEITEDDKLRISLGVTVAP--GTETSGEINLLTIPAGK 243 Query: 224 YVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 YV +E T+ +P E Y + D E+ Sbjct: 244 YVCARFELTSKDYAGAWNTL-MGWLPNSGYQPDDRPVYETYLSD---PSEDPEGKHLVEI 299 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 16/297 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I L ++E +L + +L+ +A +G+SK+H R+FK T + Y+ +L Sbjct: 9 EYINRIYKLQDYIENNLYETHTLEKLAQVSGFSKYHFHRIFKSATKETVFQYVTRTKLEL 68 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA-------FG 113 ++ + I D+A Q+ F F+R FKK + +P +R+ + Sbjct: 69 VASTLIARPDLSITDVAYQFGFSDSAVFSRTFKKYYDMSPREFRKQYNNNCKDYLLETIY 128 Query: 114 IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQ--SYSCSLEQISDFRHEMRYQFWHDFLGNA 171 + + K +T++ P+I + + +Y + + + + Sbjct: 129 TKNVNSNVNTVKGDVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEK 188 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 + P +Y + P +++Q ++ + + + G Y + +E Sbjct: 189 KSKPLAVY---HSHPDFSDEEKQRTSICLSIKEPITVDGKSDIGYMSISSGTYAVAHFEI 245 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L + + +YG +P R E Y + + ++ I ++ +PI Sbjct: 246 LQSEYGDAWDFLYGEWLPRSGYLPRNYFPFEVYVNNPNEHSENKHI---VDIYLPIE 299 >UniRef50_B8I0Z7 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=B8I0Z7_CLOCE Length = 287 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 25/298 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E +L +S D VA A S ++ QR+F + G + YIR RR++ Sbjct: 1 MEWLNQMSRAVDYIENNLTNDISYDEVAGIACCSTYYFQRIFSYIAGIPLSEYIRRRRMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L+L+ +++IA++Y + + F RAF P + R + + P+ Sbjct: 61 KAAFELQLSGARVMEIAVKYGYSTAAAFNRAFHSVHGVAPTVAR--VKGTKLNAYTPISF 118 Query: 121 GEFTM----PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 ++ T + ++GV LE+ + E+ FW + L ++ + Sbjct: 119 TINITGGERMRYRIETRDRIRIVGV----RVPLEEEPEQNFEIVPAFWDNTLKSS--VFS 172 Query: 177 VLYGLNETRPS-----QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 + L P ++ +E++Y A + D+ + +V+F +G Sbjct: 173 KIIELTNKDPHGILGITAYENPKEIYYYIATSTDKP--VPEDLVEYEIPAATWVIFECDG 230 Query: 232 L-GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VQ +P + DIE Y +E G E+ I ++ Sbjct: 231 HFPESVQTIFRRFLTEWLPFSGYDYAELPDIEVYPISEKKMIGGHS-----EVWIAVK 283 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 73/279 (26%), Positives = 116/279 (41%), Gaps = 14/279 (5%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 L ++E H D PL+L ++AA AG S +HL R+F+ TG ++ Y+R RRLS +A L Sbjct: 16 KALWYIETHADSPLALADIAAAAGLSPFHLSRLFQARTGTSVVRYLRGRRLSAAAQRLAE 75 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 A IL +AL + + FTRAF +QF QTP R + +R+ + Sbjct: 76 GAGDILPVALSAGYTTHAAFTRAFCEQFGQTPERVREHG-IDGLALVQAIRVDDAPAACT 134 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 + L DTP V + D + Q W P P+ +G+ Sbjct: 135 EAPRLLDTPAFQVA---GIGMRHTRDSGGAIPGQ-WAQLNREWPAPAPISFGV-----CC 185 Query: 189 DKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 + DDE Y AL V + Y++ + G + ++ + + Sbjct: 186 NSDDEGGFDYIAALPASALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYL 245 Query: 249 PMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 P L+ D+ERY D + + N E+ +P+ Sbjct: 246 PGTGLSLADAPDLERY----DTRFDEHTGNGGVEIWLPV 280 >UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_ECOLX Length = 327 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 40/298 (13%) Query: 1 MDQAGIIRDLLIWLEGHLDQ-PLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M + + + +++ +LD+ +++D++ A +GYS+ +LQ +FK G A+G YI+ RR+ Sbjct: 40 MLKLMTVNAITQYIDDNLDKTSINIDDLVAYSGYSRRYLQLLFKRHIGMAVGRYIQLRRV 99 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 S++AV LRLT + +I+ + +DS QTF+R FKK TP YR S WS + R Sbjct: 100 SRAAVFLRLTDLSLSEISERLLYDSPQTFSREFKKNTGYTPLQYRSSNVWSFMNL-TGFR 158 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 T P K L+ + + + C E+I + + Sbjct: 159 DTNTTFPAPKLYQLQKRDI--YAEHFICCQEEIPYYGLNSLSRI---------------- 200 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGH----------PVMLQGGEYVMFTY 229 E S +D +++F + + ++ + +++ G Y + + Sbjct: 201 ---ERITSALRDGNKKIFLSNLVEKNVGHKINIHTMLWLEKGNSETKIVINKGIYASWKF 257 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G +FI +Y +P L R+G DIE + D L +P+ Sbjct: 258 VGTIQNYIQFINHIYMNVLPFYGLNPREGYDIETFKEYSD-------DELEFNYFLPV 308 >UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARB2_SEBTE Length = 285 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 120/294 (40%), Gaps = 15/294 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + L ++E +L+ + + +A S++++QR+F ++G +G YIR RRLS Sbjct: 1 MNWISALNNALEYIENNLENDVKIKKIAQICLCSEYNVQRVFSIISGVTLGEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-RSPEWSAF-GIRPPL 118 K+AV +R T I+DIA +Y ++S F++AFK +P R RS E + + + Sbjct: 61 KAAVDIRETNMRIIDIAFKYNYESADAFSKAFKNFHGISPKDGRVRSNELKTYPKLHFSM 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP--TIPP 176 + +++ +IG+ ++Y E + E +FW +F + + Sbjct: 121 IIKGGKEMKNRIAEKGKLRVIGMKRTYKNVEEGM-----ENIPKFWIEFNASKECTEMCS 175 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 + G + E Y + + + + ++++F +G Sbjct: 176 KMDGELKGFLGLCIPHETGAGYDYMICINSSAEAGGELEEYEIPDAKWMIFEAKGKLPES 235 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 VQ +Y + D E Y + E+ IP+ + Sbjct: 236 VQSVTKQIYEEVLTGSEYKHDNKPDFELYLS-----GDIENEDYITEIWIPVVK 284 >UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=Klebsiella RepID=D0YAG4_KLEVA Length = 299 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 8/283 (2%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 +L WLE ++ S+D++A GYS+ + +F IG YIR RRL+ +AV+LRL Sbjct: 8 KMLAWLEDNIYCNPSIDDLAQYMGYSRRFVYEVFYQYGQLPIGQYIRLRRLTIAAVSLRL 67 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 T +PI IA Q +DS QTF+R FKK+F+ +P YR + W + ++P+ Sbjct: 68 TRQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYRCAVHWDTALLLKKFDPEGESLPQA 127 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQI---SDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 +F +L + G Y L + S + +R + F L L++ Sbjct: 128 RFCSLPERVYRGSPMKYELRLSDMVLQSTSKTAVRQKVDRFFTAGG----GRLSVLSDYY 183 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPV-MLQGGEYVMFTYEGLGTGVQEFILTVY 244 +++ + EV +++ LT + + G YV + G +Y Sbjct: 184 AARNNELNVEVNAFVGCHRERGALPALTTNSTLTTRPGLYVGVEFYGSWARYARLSSDLY 243 Query: 245 GTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P L +RR+G DIE + R IP+ Sbjct: 244 MELLPALGASRREGVDIECFLERHTEGGPAAERRYRVRYFIPV 286 >UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp. PE36 RepID=A6FJ46_9GAMM Length = 312 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 123/308 (39%), Gaps = 29/308 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 ++ I LL ++ ++DQPLS++ +A K+ +S+W LQR+F TG + Y+R +LS Sbjct: 10 NRFTRIGKLLDFINENIDQPLSVEQLADKSCWSRWQLQRVFHHETGLNLAQYVRELKLSL 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L + ++DIAL F S+ +F+R FK FA +P Y G+R P++L Sbjct: 70 AAEQLLGSKSRVVDIALALGFSSEVSFSRTFKNMFAYSPMAY--RRRGKRLGLRTPIKLC 127 Query: 122 EFTMP---------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 + + + T + L + S +++ ++ + W +F+ N P Sbjct: 128 SRVLDSFDLTARLLQIRIETRPEFTLHCTSGVISGLFSLEPNYQQQV-PKIWSEFIYNLP 186 Query: 173 TIPPVLY------------GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 + + DD + Y G + + Sbjct: 187 EVEKTSVLSEVSSKHMDIELIGVVGVIDANDDMNAIPYWAGSTAGALLGTTSLDT-IDVP 245 Query: 221 GGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLR 280 EY + + G +++ + ++ +P N G ++E Y D + Sbjct: 246 AQEYAVIPFTGPIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDPEDSSS----Y 301 Query: 281 CELLIPIR 288 E +PI Sbjct: 302 MEYWLPIE 309 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 115/317 (36%), Gaps = 41/317 (12%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ I ++ +++ HLDQPL L ++A A +S +H R+F + G YI+ R+ Sbjct: 9 IEYRSRINRVMDYIDIHLDQPLELKSIAEIANFSPFHFHRIFTFLIGETPIDYIQRLRIE 68 Query: 61 KSAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-------------- 105 K+A LR I +IA F + F+R FKK F TP+ +R+ Sbjct: 69 KAACRLRENMDISISEIADSCGFCTVSLFSRVFKKFFGLTPSQFRKMEKPVYAQDGILFS 128 Query: 106 ------------SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQIS 153 S ++ F + + + D V + + ++I Sbjct: 129 KNGQMVSKNLTPKHVLSPQLCSVKFKISYFMETKIEVKEMPDMKA--VYCRHMGAFKEIV 186 Query: 154 DFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQD-QADGYVL 212 ++ W + G + PS + + + D + +G + Sbjct: 187 KAYEKLIK--WAEPRGLYIPNVTKSATVTHDDPSVTELSKVRQSACIIVEGDVKGEGEIG 244 Query: 213 TGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKA 272 +++ GG+Y + +E ++ T+ + G E Y+ + Sbjct: 245 N---LVIPGGKYAVGHFELGTEDFEKAWNTMC-KWFTESGYQQGDGCTYELYHNS----H 296 Query: 273 GDRPINL-RCELLIPIR 288 P N ++ IPI+ Sbjct: 297 RTHPENKHIVDICIPIK 313 >UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5D7_BREBN Length = 285 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 16/292 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I L ++E L + ++LD VA+ AGYSK+H QR+F VTG +G YI RRL+ Sbjct: 1 MNYMEQITYALSFIEKQLTEKVTLDEVASAAGYSKYHFQRLFFHVTGETVGQYISKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A AL L + + ++A Y FDS + FTRAF K+F P+ RRS + + + L Sbjct: 61 EAAKALSLEQKSVTEVAFTYGFDSHEAFTRAFTKRFGLPPSALRRSGKMPRYMM-----L 115 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQI--SDFRHEMRYQFWHDFLGNAPTIPP-V 177 +P + + + V + +L F W P Sbjct: 116 ERMELPYLENIQRQSIEPFYVPADEALNLAGYYSPSFSVRDITGCWSRLGQQVGWQPTQK 175 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 YG+ + E Y +L + + + + L Y++F ++G ++ Sbjct: 176 RYGILRYPDTFGL--ELSFTYFASLPASE-QADIDSLESLTLPASSYLVFPHKGSVQNLK 232 Query: 238 EFILTVYGTCMPMLNL--TRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +YG+ M + D E Y G+ + C + IP+ Sbjct: 233 LTYQYIYGSWMAHASESDQLYARYDFEYYDHRF---LGNDHPDSLCFIYIPV 281 >UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD23_9ACTN Length = 305 Score = 183 bits (465), Expect = 5e-45, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 32/304 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + ++E HLD + + A A S+ +RMF V G + YIR RRLS Sbjct: 11 MGWIEGLNASMEYIEKHLDDDIDVVEAARLATCSEGQFRRMFSYVAGVGLTEYIRRRRLS 70 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+AL R ++D+A++ + S FTRAF++ F +P+ RR + L Sbjct: 71 CAALALSRGER-VIDVAIRCGYASSTAFTRAFREAFGVSPSDARRPGTTLCVFPQLTFSL 129 Query: 121 GEFTM--PEHKFVTLEDTPLIGVTQSY----SCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + VT ++ LIG+ L Q++D E FW Sbjct: 130 AVVGSEPLSWRIVTHDEMRLIGIAFPCDAAMDAPLIQMADEGREELRHFWGSASQAGDIE 189 Query: 175 ----------PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 P ++G+N R ++ Y A++ ++ + + G + Sbjct: 190 RLFSLADDGGPRRIFGVNSVR-------RGDLTYHIAVSS--SEEAPAWTDEIRVSRGSW 240 Query: 225 VMFTYEGLGT-GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 +F G E +Y +P +E Y P+ D + R E+ Sbjct: 241 AVFECVGPCEVATAEHYHRIYAEWLPASGYELAHDVSLEVY-PSGDFSS----TGYRSEI 295 Query: 284 LIPI 287 IP+ Sbjct: 296 WIPV 299 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 114/304 (37%), Gaps = 25/304 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E HL +PLSLD ++ AG+SK+H R+FK + + Y+ +L Sbjct: 9 EYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLEN 68 Query: 62 S-AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP-----------EW 109 + A + T + DIA + F F+RAFK + +P YR + ++ Sbjct: 69 ATAFLIHRTDMTVTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCKEPYKISQY 128 Query: 110 SAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFW----- 164 + +P + E + + L++ I Y+ S ++ ++ + + Sbjct: 129 NRSISKPKCKNTREVKGEIEILELDNMNTIY--TRYTGSYGNLTSTFPKLLERLFTYASE 186 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 + LG T + + P ++ + + + +++ G+Y Sbjct: 187 QNLLGLENT---QILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPSGKY 243 Query: 225 VMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 ++ ++ + + +Y + N R E Y + ++ Sbjct: 244 LVGHFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYL---NNPHNHPQNRHLVDIY 300 Query: 285 IPIR 288 +PI Sbjct: 301 LPIE 304 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 103/324 (31%), Gaps = 47/324 (14%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + L+ + +L PL+L+ +AA + +S +HL R+F V G + A+IR R+ ++ Sbjct: 10 YESRVNRLIDHIVNNLSGPLTLEEMAAVSSFSPFHLHRIFSTVMGETLAAFIRRVRIERA 69 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP---- 117 AV L R + DIA F S Q RAF + P +YRR G+ P Sbjct: 70 AVLLLWNPTRSVTDIAFACGFSSSQNLARAFTRHMGMPPGVYRRCRREEGCGLTPAGAGN 129 Query: 118 --------------------------------LRLGEFTMPEHKFVTLEDTPLIGVTQSY 145 L + + + + + Sbjct: 130 DDNGKNGNAGGMGLWHGGDAAGASGHHLHLAHSLLERSATMDVRIEEMPRFHVAYLRHVG 189 Query: 146 SCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQ- 204 + I R W G G++ P + +A Sbjct: 190 PYTEATIGPVWG--RLMEWAGARGLL-RPGVKTLGVSWDDPEVTPPEHCRYDACIVIAPG 246 Query: 205 DQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERY 264 + DG T + GG Y ++ E ++G +P + E Y Sbjct: 247 VEVDGGCATQE---VGGGLYAVYRRPVACGQFTEAWNELFGQWLPTSGMQADDRPCFELY 303 Query: 265 YPAEDAKAGDRPINLRCELLIPIR 288 A + P + + +P+R Sbjct: 304 NDVMQAPP-EGPWD--VSICMPVR 324 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 18/295 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ +L ++ HLD L L+ +++ A +SK+H R FK G ++ Y++ RL ++ Sbjct: 11 YHARMQRVLDHIDRHLDGDLDLEAMSSVAAFSKFHFHRQFKATFGVSLHRYVQLARLRRA 70 Query: 63 AVALRLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF-GIRPPLRL 120 + L + + DIAL +++ F RAF+++FAQ+P+ +R+SP+W + PL Sbjct: 71 SKRLADGQGQSVTDIALDAGYETPDAFARAFRQRFAQSPSRFRKSPDWEPWLAAFGPLNA 130 Query: 121 GEFTMPE----HKFVTLED-TPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + + V L + P + E + R+ W G +P Sbjct: 131 ARSKIMQTTFTPDQVALREVAPTRVAIFEHRGDPETLDATIQ--RFIAWRKAAGLSPRTN 188 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQA-DGYVLTGHPVMLQGGEYVMFTYEGLGT 234 P + + + + + + DQ D T + GG + G Sbjct: 189 P-TFNIWHSERRPPDPADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTH 247 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPIN-LRCELLIPIR 288 ++ L +Y +P R D Y D P EL +P++ Sbjct: 248 NLEPAALYLYRDWLPASGEEMR---DFPIY---CQRFFLDAPEQGTAAELFLPLK 296 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 110/304 (36%), Gaps = 23/304 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M +I++ L +++ H+ + ++++ +A AG+S +H ++F G + YI R+L Sbjct: 1 MHYLNLIQNTLDYIDFHILEKITVEELAKIAGFSTYHFYKVFNSFVGMPVMEYITRRKLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + L + +LDIAL Y F++ FT+AFKK F P+ YR +L Sbjct: 61 YALYDLSN-GKKVLDIALTYGFETHAGFTKAFKKSFGYPPSFYRIHAPIGPLKKVDLKKL 119 Query: 121 GEF----TMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFLGNAP 172 E + E K + + ++G + I F + + L Sbjct: 120 KENKTGGIIMEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQ 179 Query: 173 TIP-PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY-- 229 P YG+ + + Y + D ++ + + + Y +FT Sbjct: 180 FPPRHGEYGICVNTNMETDE----FSYILGVEVLSFDHAMIDMYTLDVPAATYAVFTTPS 235 Query: 230 ---EGLGTGVQEFILTVYGTCMPMLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCELLI 285 +Q + P + D E Y + E+ + Sbjct: 236 VEDHDFVDSIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSK---FSMEIYV 292 Query: 286 PIRR 289 PI++ Sbjct: 293 PIQK 296 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 14/261 (5%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 L +L HLD+PL LD +A +A +S++H R+++++ G + + L ++A L Sbjct: 20 RALDYLWRHLDEPLLLDRLAEEACFSRFHFHRLYRNLMGETVMESRQRMLLHRAAGELGR 79 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 RP+ +A++ F S F RAF ++ +TP YR+ L E TM + Sbjct: 80 ADRPLASVAVRAGFSSSAAFIRAFAGRYGETPGRYRQRRLM-------FLNQRERTMRQV 132 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 + V + + + + + +I +R P +GL +Q Sbjct: 133 EIVERDAVKV--LMRHHRGPYMEIGKAFDALRAV---QGPQQGVGAPSRSFGLYLDDQAQ 187 Query: 189 DKDDEQEVFYTTALAQDQADGYVLTGHPV-MLQGGEYVMFTYEGLGTGVQEFILTVYGTC 247 + A +G + G + G Y + G + + E +Y Sbjct: 188 TPAADCRS-IACATVPAFMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHW 246 Query: 248 MPMLNLTRRKGQDIERYYPAE 268 +P +E Y A Sbjct: 247 LPASGEMPGDTPCVEEYLNAP 267 >UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR14_CLOPH Length = 281 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 23/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + D A A S+ L MF VTG + YIR RRLS Sbjct: 1 MDWNIRLNRALDYIEENLSNEIDFDYAAKLALCSRNDLSNMFFIVTGIQLSEYIRRRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ L+ + I++I+++Y + S F RAF+ Q +P R + R ++ Sbjct: 61 LAALELQNSDEKIINISMKYGYSSPTAFNRAFQNQHKVSPQYARSRKIFINSYPRITFQI 120 Query: 121 ---GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ--ISDFRHEMRYQFWHDFLGNAPTIP 175 GE M + + E ++G +++ + + + F ++ + + + + P Sbjct: 121 ILNGEINM-KCRIEKKEAFKVVGAKKTFRNDMVENLLPHFWRDLPQETYEKIIKQSNGEP 179 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 L GL + E Y A + ++ V + + + +F EG T Sbjct: 180 KGLLGL-----CANFGGEHTFDYYIATSTKNSE--VQDLDQINIPEATWAIFEAEGTVTE 232 Query: 236 VQEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + I ++ P R D+E Y+ + K N EL P+ + Sbjct: 233 L---INRIWQEWFPSSGYRRADNSIPDVEVYFDYDFPK-----ENYTYELWYPVVK 280 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 14/280 (5%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 +L L H + L +A A S +H R+++ V G I ++ RL +A L Sbjct: 13 KVLQHLHQHYPHDIDLARLADIACLSPYHWHRLYRAVLGETIYETLKRIRLHHAARLLLD 72 Query: 69 TARPILDIALQYRF-DSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPE 127 + +P+ DIA + + Q+F R F+ + +P YR + P + + Sbjct: 73 SHKPLPDIARACGYGGNAQSFARIFRDAYGMSPQDYRARGGVPYPALPPEHTTATYPV-- 130 Query: 128 HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPS 187 K + P++ + I ++ + G+ P +G+ P+ Sbjct: 131 -KIRDIAALPVVALPHH--GDYMSIGASFSQL--ETLLTLRGHLPAPQARYFGIYYDDPA 185 Query: 188 QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTC 247 + + L G Y + + G + +Y Sbjct: 186 GCPTAQLRAAAA---VALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRDW 242 Query: 248 MPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +E Y P LR + +P+ Sbjct: 243 LLNSPYQLADAPCLEEYLNDWQQVP---PQELRTNIYLPL 279 >UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9YCD3_9FIRM Length = 310 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 31/303 (10%) Query: 2 DQAGIIRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 D I + ++E HL D+ L L+ V A GYSK+H R+F +TG + YI+ RR+S Sbjct: 21 DNREQISRAVDYIEEHLQDETLDLNAVTAAVGYSKYHWHRLFTALTGVPVHRYIQRRRMS 80 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L TA PIL IAL + +Q++F+R F+ + +P YRR + R L+ Sbjct: 81 EAARRLVFTADPILRIALDSGYQTQRSFSRQFQAVYHCSPKRYRRRKLYLPLQPRLELQN 140 Query: 121 GEFTMPEHKFVTLED---TPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + + + + D L+G I + W N +IP Sbjct: 141 SQPDALRNFKIQIRDEGTITLVGYCAELRHGFGAIG--------RTWRKLHQNKSSIPGR 192 Query: 178 -----LYGLNETRPSQDKDDEQEVFYTTALAQ-----DQADGYVLTGHPVMLQGGEYVMF 227 L G+++ + +F A AQ DQA + L YV+F Sbjct: 193 SDPDFLIGVHDYTEFSNSQK-GPMFTCWAGAQVELLDDQAQSVPKGMRRLTLPASRYVVF 251 Query: 228 TYEGL-GTGVQEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELL 284 Y+G ++ I +Y P + + D+ RY + D + ++ Sbjct: 252 EYQGRCQDSLEPVIELIYNQWFPSASCQLNENARYDLIRYGESVDEQGLSD-----IQIG 306 Query: 285 IPI 287 IPI Sbjct: 307 IPI 309 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 119/293 (40%), Gaps = 21/293 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++ HLD+ +S+++VA +SK++ R+FK TG +I A+I+ ++ Sbjct: 1 MITNKLVNQSIDYIMRHLDEEISIEDVADYCHFSKYYFSRVFKKETGESIYAFIKRLKME 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE----WSAFGIR 115 +SA+ L+ + I DI Y + S ++ AFKK +PA +R+S F Sbjct: 61 QSALNLKIEKDKSITDIGYDYGY-SPSNYSSAFKKHHNISPAEFRKSKNTTCVPHPFYQD 119 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + F + + + E + + + Y + ++ ++ ++ D+ + Sbjct: 120 KLAKFQSFEEYDQRILIQELDDFVVIYERYIGNYIELGKNWYDFTEKY-KDYFKEDTLLI 178 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 Y PS D+ + D + +QGG++ + ++GL Sbjct: 179 ERFY----DDPSITSLDQCLYDICMTV-----DKNCSLDNVTTIQGGKFALCRFDGLIQD 229 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + V+ +P ERY +++ +L IPI+ Sbjct: 230 IFAAFQGVFNIWLPDSGYEMD-----ERYGLDIYRAIDWESMHVVMDLCIPIK 277 >UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX Length = 309 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 123/286 (43%), Gaps = 19/286 (6%) Query: 3 QAGIIRDLLIWLEGHLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I +L ++E +++ P+ ++++ +GYS+ +LQ +F D G +G YI+ RR+S+ Sbjct: 4 KKMTINAILDYIEDNIEISPIDINSLVEYSGYSRRYLQLLFFDYIGMPVGKYIQRRRVSR 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +AV LRLT P++ I+ + +DSQQTFTR FKK TP YR+ W+ F + R Sbjct: 64 AAVLLRLTNLPLVTISEKLCYDSQQTFTREFKKHTGNTPLQYRKDKIWT-FKNQTGHRHL 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + P + LE+ G ++ + E Q W+ L+ Sbjct: 123 DTLFPVPELRRLENKDFFG----TPVCFKEKIPYTAENSQQKWNMVKSLFSRSDEPLFVS 178 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 N +D F ++ + + + G + G + FTY G I Sbjct: 179 NAISKENKLNDN---FIINSIFWAKKEHSSIEGK---IDEGLFAYFTYHGSIKDYVFHIN 232 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P L +R D+E D + E +P+ Sbjct: 233 NIYMNVLPYXGLQKRNSYDLEIITRNTDG-------SFYFEYYLPV 271 >UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1I3_ERYRH Length = 288 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 125/296 (42%), Gaps = 23/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ +++ + ++E HLD L L+++A + YS +H +F +TG + Y+R RRLS Sbjct: 7 MNTLEHLQNAIDYIETHLDSSLKLEDIAIHSNYSPYHFHNLFSALTGMGVMDYVRRRRLS 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY--RRSPEWSAFGIRPPL 118 ++ + ++D+A+ Y ++S ++F++AFKKQ TP+ R+ + F I+ Sbjct: 67 EAGMLFISQKVKVIDLAVHYDYESAESFSKAFKKQHHYTPSEIKKRKGSLQTTFPIKITH 126 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWH-DFLGNAPT 173 + + E + G +++S +L++I F E+ D Sbjct: 127 NQKGAVKMKMRIEEKESVNIAGYQKTFSYENGANLKEIPMFWDEINQSAKDLDLFKMNDH 186 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 + GL + + + + Y + D +G V V L +++F G Sbjct: 187 KIEGIVGLCQ------QASDGFMTYLIGTSCDFQEGLV----NVELPKSRWLVFDAVGPL 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VQ + +P + D+E Y ++ +L E+ + I+ Sbjct: 237 PQSVQNTWRDIVSLYLPTCSEEIDGSMDLEVY-----SQEDPNSESLVTEIWLRIK 287 >UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria RepID=A9KRP2_CLOPH Length = 292 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 14/277 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +++ ++E +L +S D ++ AG S ++ QRMF + + YIR RRL+ Sbjct: 1 MDWIKKFNEVIKYIEDNLKGEISYDTISQIAGCSIYNFQRMFSYIADKPLSEYIRNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PL 118 +A + + I+DI+ +Y ++SQ F+RAF+ P+ R + + Sbjct: 61 LAAFDIMNSKDRIIDISFKYGYESQDAFSRAFRSFHGVLPSAARNETVQLKSCPKLSFQI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ------ISDFRHEMRYQFWHDFLGNAP 172 + ++ V ++G+T + S + + + + L Sbjct: 121 NIKGENYMNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTD 180 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADG----YVLTGHPVMLQGGEYVMFT 228 P G+ + + E + D + +V+F Sbjct: 181 YRPAGFLGICADGKWGNSE-EMDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFD 239 Query: 229 YEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERY 264 +G L + VQ+ Y +P IE Y Sbjct: 240 ADGELPSAVQKIHKQFYSEWLPNSGYELADLPVIESY 276 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 108/289 (37%), Gaps = 19/289 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLS---LDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 + ++ + H PLS L+++AA A +S WH R++ VTG ++ +R RL Sbjct: 10 YRARVARVVAHIVAH---PLSTHRLEDLAALAHFSPWHFHRLYAGVTGESVAVTVRRVRL 66 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 + +A L+ + +IAL ++S Q F+RAF + Q P+ ++ + + A Sbjct: 67 AHAASLLQEGMLSVTEIALASGYESPQAFSRAFSQFSGQAPSAFQAAMQRLAPDAPEERL 126 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + ++ + + I +R+ +G P V Sbjct: 127 AASSPATTVRLIEQPAQQVLALRHRGPAAT--IPHTHRRLRW-----LIGELP--GTVWL 177 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 G+ + D ALA+ A + + G Y G T + Sbjct: 178 GMCRED-AGDPGSGLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAA 236 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P +E Y ++ P LR +LL+P+R Sbjct: 237 FNALYARWLPASGYEPDDRPALEHYL---NSPRNAAPAELRTDLLVPVR 282 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 17/288 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I ++ ++ HL + L+ DN++ A S +H +R+FKDV G +G YI+ RL Sbjct: 104 HYALIINVQEYINRHLFEDLNSDNLSHIACMSIYHFRRVFKDVVGENVGDYIQRLRLEYI 163 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + ++ Q F ++ T +RAFKK F + +R++ A + Sbjct: 164 AFKLISTNTRVSELLEQTNFHNKHTLSRAFKKHFQMSIPAFRKTYSSVACENKI------ 217 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 P+ +++ + + + +Q +F + N ++ Sbjct: 218 IKQPDCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKY--NLTDKGFKYVSIS 275 Query: 183 ETRPSQDKDDEQEVFYTTAL--AQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + D+ + + + G+ +Q G Y +F +G + + Sbjct: 276 LDSLDITEIDKCRFLIGITVPYSMEVPKGFGTLN----IQAGLYSVFNIKGGYHELNKIY 331 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VY +P R+ E Y + + D L E+ +PI Sbjct: 332 RNVYLDWLPNSKYRLREQMTFEIYANTPNKTSTD---ELVTEIYLPIE 376 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 120/292 (41%), Gaps = 26/292 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ +L PL LD +A + S+ L R+ K ++ AY+ +R+ ++ Sbjct: 9 YQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY------RRSPEWSAFGIRP 116 + + + D+A + +D+ Q+F++AFKKQF+ +P Y R E + Sbjct: 69 VLYMHTEDMSLADLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETEKWSNPH 128 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 L + + + V + G + Y + + F E + A + Sbjct: 129 DLEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQ----------ALSEDT 178 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 GL+ P+ D+ FY A + + G + LQ G+Y ++T +G G+ Sbjct: 179 RFIGLSFDDPNVTHPDQCR-FYACASVGKEIIPSGMFGT-IRLQKGKYAVYTLKGSYAGL 236 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 QE +Y T N T+R G E Y + + ++ IPI+ Sbjct: 237 QE----LYNTINIDFNYTKRHGMAFEEYVSYSEEDDDTQ----VTKIYIPIK 280 >UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UL45_YERRU Length = 280 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 11/286 (3%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 ++R +L W+E ++ S+ + + GYS+ L+ F +G +G Y+ RR+S++A+ Sbjct: 4 AVVRYILSWVEENIYTGASIGKLVDETGYSRRTLELWFLKYSGFPLGEYLLRRRMSRAAM 63 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 LR+T IL+++ + F S Q FTR+F+ TP YR+ +WS ++ PL + + Sbjct: 64 LLRMTELSILEVSTMFHFYSSQNFTRSFRIFSGVTPTKYRKQDKWSVKLLQRPLLMEDTH 123 Query: 125 MPEHKFVTLEDTPLIG--VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + L + L G V +++ L + D N+ + + + Sbjct: 124 NLKAEHCVLPELKLRGSSVVCAHNFILPLVEDDLARRMKSAVSSIRDNSGNEVCIAFRI- 182 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 PS ++ + D +++ GEY+ F + GL + F Sbjct: 183 --MPSASLSASRDAVINVEMIIHDMDEKKEGTEEIVIPAGEYIQFRFSGLWSEYIVFTRL 240 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VY + + RR D+ + D+ +L C LLIP+ Sbjct: 241 VYFK-LVEEKVCRRNSYDLIFFTYQPDS-----NDDLICRLLIPVE 280 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 176 bits (446), Expect = 8e-43, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 19/299 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 +D + + ++ HLD SLD VA A S +H R+FK + G I + R R+ Sbjct: 8 LDYRKPVFKAMDYISQHLDDNPSLDEVATAAAISTFHFHRIFKTMVGETIAGFTRRLRME 67 Query: 61 KSAVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPP 117 ++A L + I +AL F S Q F +AF+ FA +P+ YR+ W + P Sbjct: 68 RAARRLLAAPQSDITTLALAAGFSSSQNFAKAFRLHFAMSPSEYRQQQGGNWKSKIGNDP 127 Query: 118 LRLGEFTMPEHKFVTLEDTPLIG-----VTQSYSCSLEQISDFRHEMRYQFWHDFLG--- 169 L + VT L G + + ++ + E Q D L Sbjct: 128 LPFETYDGLVMHPVTEHQGLLQGASVKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFA 187 Query: 170 -NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 + P L P + L + G LT + G Y + Sbjct: 188 SDEAMTPAGTLSLYWDIPDITDETRCRTDICIELGPEIHAGRQLTTQ--TIAAGPYAVCQ 245 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + G + T +G + L+ E+Y+ D + ++ IP+ Sbjct: 246 FIARGDQLVTTWETAFG-WLVSKGLSCDDRPCYEQYHAGTDPDRD----HYVFDICIPL 299 >UniRef50_A9KJ61 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=A9KJ61_CLOPH Length = 313 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 111/301 (36%), Gaps = 27/301 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + + ++E ++ + L+ A KA S++H R F + G + YIR R+L+ Sbjct: 20 MDYMDKVNNAIDFIEANITDDIDLNLAARKACCSEYHFLRTFSFLAGIPLSEYIRRRKLT 79 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPL 118 +A L ++D+A +Y + S + F RAFK TP R + P + I L Sbjct: 80 LAAFDL-FDGVKVVDVASKYGYSSPEAFARAFKGLHGITPIAARNTDAPLKAYPKITFHL 138 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-----PT 173 L +++ + G+ + + +++ + + QFW + +GN Sbjct: 139 SLSGDGEIDYRIAQKNSYEVCGI----TIDVPILNEKTNTVITQFWEENIGNGVIGQFHR 194 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF-----T 228 + Y + + + Y + + + + + +F T Sbjct: 195 DIGLEYNICLNAALFNYNKN-TFSYMICYEMPSSRVHG-EYSVLSVPSFTWAVFSTPEHT 252 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++ ++ P G + E ++ D E+ +PI Sbjct: 253 SKETTDIIRNMRKRIFMEWFPTSVYKHAGGPEFEIFHNKND--------KFVVEIWVPII 304 Query: 289 R 289 + Sbjct: 305 K 305 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 109/289 (37%), Gaps = 17/289 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q +I + ++ HL L D ++ AG SK+H +R+FK + G ++G YI RL Sbjct: 107 QYELIIKVQEYINCHLFDDLDSDRLSQVAGISKFHFRRLFKAICGDSLGNYIFRLRLEYI 166 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR--L 120 A L T + ++ Q + ++ T +RAFK F + +R+ + + P++ L Sbjct: 167 AFKLISTDTSVPELLSQINYQNKHTLSRAFKSYFNCSIPEFRKKHSNARPEGKNPIQVEL 226 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + L+ ++ S+S +Q+ F P+ Sbjct: 227 SIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSEN----------YELPSKGCQYVS 276 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L P ++ L Q + + GEY +F ++GL + Sbjct: 277 LTLDYPLITPEEHSRFMVGVTLPQSFETPKGFGMYE--ISSGEYAIFRFKGLYHELNRVY 334 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y +P + T R+ E Y + L + IP+ R Sbjct: 335 RHIYLDWLPTSDYTLREPFTFETYINTPEKTPAS---ELITAIYIPVTR 380 >UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=A9KR18_CLOPH Length = 301 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 115/306 (37%), Gaps = 27/306 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + + VA KA S ++ QRMF +T I YIR RRL+ Sbjct: 1 MDMLTKMNAALDYIENNLTEDIDFTIVAQKACCSSYNFQRMFSFITDVPIAEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A+ L+ T ++D+AL+Y +DS +F+RAF TP ++S + ++ Sbjct: 61 QAAIELQNTNAKVIDVALKYGYDSTVSFSRAFSNIHGITPNEAKQSGVELKAYPKISFQI 120 Query: 121 GEFTMPE--HKFVTLEDTPLIGV--------TQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 E ++ T E + G+ S+ E Y+ + G+ Sbjct: 121 SIKGEKEMNYRIETKEAFDVFGIETVASLSGEDSFVSPAELWRKSHQNGDYERLFNASGD 180 Query: 171 APT-IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 P I L ++ + + + + D T + Y +F Sbjct: 181 LPKFISQDLCKIHGVENYRKTEGNTFPYMLCSFVSDSFKTDGYTIQ--HIPSQTYAIFPS 238 Query: 230 ------EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 EG ++ Y +P N R G + E Y G EL Sbjct: 239 EKFMWNEGSMEVLRNLQKRFYSEWLPTANYERVSGANFEIY--------GGDKEYGYIEL 290 Query: 284 LIPIRR 289 P+++ Sbjct: 291 WFPVKQ 296 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 15/292 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++E ++ + LSL +A A +S +H R+F+ +TG + + R+ K+ Sbjct: 11 YTQRINRAMDYIERNICEELSLAQIADAACFSPYHFHRIFRAMTGETVNQFTSRLRVEKA 70 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE-----WSAFGIRP 116 A L+ + I D AL F S TF R+F+ +F + +RR + + Sbjct: 71 ARRLKQNPSISITDAALDMGFASPSTFARSFQARFGMPASQWRRDATASVEARANETMVL 130 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 + + LE + V ++ + ++ + E Sbjct: 131 ERPRSSLVADKVEVGKLEPRTVAYVRRT--GNFQERPEIFGEAFGTLMAWAGPRGLAHGA 188 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + L P Q D E F + + AD G +M+ GG Y + Sbjct: 189 EMMCLFHDDP-QVTDAELMRFSSCLTLRGPADVEGEVG-KMMVGGGRYACGHFVITHDQS 246 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Q ++G +P+ I + P + + IP+R Sbjct: 247 QAAWEYMFGDWLPLSGYEPEN---IPCFQLYPSMTGEMGPHEVV--ICIPVR 293 >UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=Actinomycetales RepID=D1WZP5_9ACTO Length = 290 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 114/294 (38%), Gaps = 17/294 (5%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS- 62 + + + +E HL + + +A A S++H +RMF + G + Y+R RR++ + Sbjct: 2 LERLNEAMEHIEAHLGERVEAAELARIAMTSEYHFRRMFSALAGLPLSDYVRRRRMTVAG 61 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-- 120 A L R +LD+A++Y +D+ + F RAF+ P RRS R RL Sbjct: 62 AEVLGAPDRTLLDVAVRYGYDTGEGFARAFRAVHGIGPGEARRSGAVLRSQQRLTFRLVV 121 Query: 121 GEFTMPEHKFVTLEDTPLIG----VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 T +++ V + ++G V + I++F + + + P Sbjct: 122 EGSTAMQYRLVEKDAFRVVGRRARVPLVHEGPNPAIAEFIRGIGREELDRIAALSDQDPA 181 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTG 235 L G++ + + + E+ Y + + + G + +F EG Sbjct: 182 GLVGVS-DQLDPSRAEGTELDYYHGVVS--GAEPPEDLDSLSVPAGSWAVFENEGEFPGA 238 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q V+ P R G +I R + + EL IP+ R Sbjct: 239 LQYLWRDVFTQWFPSNPYVSRPGPEILR------VRLTEEGKRAEAELWIPVER 286 >UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJ15_CLOCL Length = 290 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 114/300 (38%), Gaps = 28/300 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + ++E +LD + + VA +A S++H RMF +T + YIR R+L+ Sbjct: 7 MVWLDRMNSAINYIEENLDGEIEMGEVARRACCSEYHFTRMFSFITDIPLNEYIRRRKLT 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR----RSPEWSAFGIRP 116 + L+ + I+D+A +Y +DS +FTRAF+ TP+ R ++ Sbjct: 67 LAGFELKNSDIKIIDLANKYGYDSPNSFTRAFQGMHGVTPSEARILGVEIKSYAPISFL- 125 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVT--QSYSCSLEQISDFRHEMRYQFWHDFL---GNA 171 + + ++ V + L G++ S E I DF ++ + + G+ Sbjct: 126 -ITINGGIGMNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHG 184 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF--TY 229 + L + D + + Y L + +G V + + +F Sbjct: 185 NERTLLKSVLYDM-------DNEMMKYMIGLDMPE-EGVSDEFEVVTIPAKTWAVFPLVL 236 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 E + ++ P +G ER + +D K E +P+ + Sbjct: 237 EKPEDSITSIWKRIFTEWFPNSGYELDEGSWQERCHWRDDGKM-------IVEAWVPVVK 289 >UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQY0_CLOCL Length = 286 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 22/298 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E H+ ++L +V+ YS +H R+F + + YIR R+L+ Sbjct: 1 MDLLTQLNLAMDYIEEHICDDIALADVSEVTTYSSYHFGRLFYYIAEMPLSEYIRKRKLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPL 118 +A+ L+ ++D+A++Y +D+ +FTRAF +Q TP + R++ + + Sbjct: 61 LAAMELQSNDVKVIDLAVKYGYDNADSFTRAFVRQHGVTPTVGRQTGVMLKIFTPLTFQI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSY-SCSLEQISDFRHEMR--YQFWHDFLGNAPTIP 175 ++ + E+ + G+ + + + + +I DF E + + F Sbjct: 121 KIKGVQEMNWRIEQKEEFEIFGIERIFRNDDVGKIPDFWTECQNNGSYERLFEDAGGNRG 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 + + D E Y A+ + + + + +F +GL Sbjct: 181 GKDACVINAICGHIEPDANEFPYML-FAEKKEGCRIDGYKTAKISKHTWAVFRLDGLKDH 239 Query: 236 ----VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E Y +P + KG D+E Y + E+ IP+ R Sbjct: 240 DDCKIPELFQRAYSEWLPSSGYDKAKGPDMEIYGDDFE------------EVWIPVVR 285 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 45/326 (13%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I+ L ++E +L+ LSL +VA + +S++H R+FK V + YI RR+ ++ Sbjct: 5 YLARIQQALEYIETNLNTHLSLSDVAKASHFSEFHFHRIFKGVMDETLNDYIGRRRMERA 64 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 L I IAL+ F S F +A K F +P+ R + S + Sbjct: 65 VNKLMCYPEHSITHIALESGFSSSANFAKAVKLYFGFSPSELRDPSKLSNQSDKTKNSKI 124 Query: 122 EFTMPEHKFVTLE---------------------------------DTPLIGVTQSYSCS 148 ++ V L D + +++ Sbjct: 125 GKIQSKYGKVFLPSDLYPTQVIKNDSEQQQDAAELEIKSLQKGEKMDVKVKNLSEQKVIK 184 Query: 149 LEQISDFRHEMRYQFWHDFLGNAPTIP-----PVLYGLNETRPSQDKDDEQEVFYTTALA 203 L + + YQ W + A T + P ++ + Sbjct: 185 LASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVLTPLNKCRYEAAIIMP 244 Query: 204 QDQADGYV-LTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIE 262 + V + G+Y + Y+G G + L Y +P IE Sbjct: 245 EAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHWLPQSGYEPDHFPVIE 304 Query: 263 RYYPAEDAKAGDRPINLRCELLIPIR 288 Y + E+ I ++ Sbjct: 305 HYLNDARVDGF-----VEMEIYIKLK 325 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 20/295 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++E +L L + GYS R+F V+G+++ YIR R+++ Sbjct: 1 MDIMKSFNLAIDYIEDNLTDELDEKEITRITGYSFPMFSRIFSIVSGYSLSEYIRLRKMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-IRPPLR 119 +A+ L+ + + I+DIA++Y ++SQ +F AFK TP ++ ++ F I + Sbjct: 61 NAAIDLKNSDKRIIDIAIKYGYNSQDSFALAFKSFHKLTPGQVKKGEKYQYFSRIYFSIS 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + K + + G+ + S + W + P + Sbjct: 121 VQGGNQMDIKIEKKKAFKVAGIKSDVTKSSNF---------PKVWDRLVEKVPREKFEEF 171 Query: 180 G---LNETRPSQDKDDEQEVFYTTALA-QDQADGYVLTGHPVMLQGGEYVMFTYEGLG-T 234 G + D+E Y D+ L + + EY + + +G Sbjct: 172 GSGQIFGVGYDYIMDEEDSFIYLAGFDLTDEVKAKELGLDTLSIPEKEYAIVSLQGPIPK 231 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + P + D E Y + + EL +PI + Sbjct: 232 CIHEGWKYIISYFFPKEGYRHDESPDFEVY-----GDGDPNSEDYKMELWVPIVK 281 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 102/283 (36%), Gaps = 18/283 (6%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 +E L++ + L+ +A GYS WH R FK V I YI+ RL K+A L+++ PI Sbjct: 17 IEEQLEKEIGLNQIAFLTGYSDWHFHRFFKSVQKENIKTYIKRLRLEKAAYELKISNFPI 76 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTL 133 L+I ++ F S + FT+AFK+ TP+ +R+ + + + +H F Sbjct: 77 LEIGMEAGFSSHEAFTKAFKRVIGITPSEFRKKHQIKMKDLSLSQLSLPSGLTKHSFQKK 136 Query: 134 EDTPLIGVTQSYSCSLEQISD--------FRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 +P + + S + + + + + W G+++ Sbjct: 137 TISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLL-----EFHHKWIGISQDD 191 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 P D +++ G + GG Y+ Y G + + Sbjct: 192 PDVTCKDNIRFDLGFTISEKFPSPPDGFGKQ-TIPGGNYLQIRYTGDYENLPMIYDWILN 250 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + L + E Y P ++ IP+ Sbjct: 251 QYCIVSKLKLKNNPPWECYLN----PFEPIPDKRITDIYIPLE 289 >UniRef50_B8FSS1 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSS1_DESHD Length = 287 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 115/290 (39%), Gaps = 15/290 (5%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ ++E HL + LSL+ ++ AG S +H +++F ++G + YI+ R+LS++ L Sbjct: 5 LNHVIDYIEEHLTEELSLEIISEYAGVSDYHFRKIFFYLSGLTLSEYIKNRKLSEANKDL 64 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF-GIRPPLRLGEFTM 125 + ++A +Y + S FTRAFKK P+ + +F + + + T Sbjct: 65 LQ-GETVTEVAFKYGYQSMDGFTRAFKKWSGFLPSDVIKKGLSKSFPKLSFVISVKGGTA 123 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQIS----DFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 E + L+GV++ E ++ + + + P + Sbjct: 124 MEFRIEDKPAFNLVGVSKRVPMQFEGVNKEIVKLAQSITAEQREEMHALQNIEPYEIINA 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFI 240 + + +E ++ + + + V ++ + +F EG + +Q+ + Sbjct: 184 SYDADADFLKEEGDLTHLIGILTTENQVS-DLLEKVPVEACTWAIFPNEGPFPSMLQDTM 242 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC-ELLIPIRR 289 +Y +P N K K + E+ IP+R+ Sbjct: 243 AKIYSEWLPSSNYEVIKAPAF------SFTKMNQHKKDCAYSEVWIPVRK 286 >UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C368D7 Length = 320 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 126/319 (39%), Gaps = 44/319 (13%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I +L ++E HL + ++ + +A AG S ++ QR+FK +TG + Y++ RRL+ Sbjct: 1 MHAWEAIDGVLDFMEEHLREEMNTEALAQSAGLSPFYFQRLFKRLTGRPVLEYVKMRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP---- 116 +A AL + ILDIA+ Y F S +FTRAFK+ + +P YR+ +P Sbjct: 61 LAASALEDREKRILDIAVDYGFSSHASFTRAFKEAYGISPEKYRKDRPMLNTCEKPELSM 120 Query: 117 ---------PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRH---EMRYQFW 164 PL G+ + + E +G+ + +Q+ ++ Q W Sbjct: 121 RYHLVDEGVPLIAGDIVLEIRRMRLTEPEWYLGLETAVEIK-KQVPAGESTGIDVPGQLW 179 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDDE-QEVFYTT----------ALAQDQADGYVLT 213 F P + + E S D E Y A A++++ Sbjct: 180 KAFHEKKPAVDGLAQEGPEMGMSHKADPEMGTFLYFAGALSERGTEYAGAEERSAKDGFP 239 Query: 214 GHPVMLQGGEYVMFTYEGL------GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPA 267 L GEY++ E + + + ++GT +P LT + P Sbjct: 240 LVKRELPAGEYLVCRIEAETFEKLVTAALDQAGVYLFGTWLPAHGLT---------FLPF 290 Query: 268 EDAKAGDRPI-NLRCELLI 285 K + ++ E+ + Sbjct: 291 SAEKYFLKNEDDIYMEIWV 309 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 109/299 (36%), Gaps = 22/299 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQP---LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 D I ++ + L +P +L+++AA A S +H R+++ +TG ++ ++ R Sbjct: 9 DYRRRIARVVEAI---LLEPGAHHTLESLAAVAHLSPFHFHRVYRALTGESVVETVQRLR 65 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI---- 114 L+++A L A + +A ++S Q F RAF+ +P+ ++ + A Sbjct: 66 LAQAAQRLTDAAASVTTVAHDAGYNSPQAFARAFRGFTGVSPSEFKARQKRLAAPCVGRA 125 Query: 115 ---RPPLRLGEFTMPEHKFVTLEDT-PLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 + P V L + P ++ + + I + + Sbjct: 126 ADAQLAASKNNAPAPALPAVELTEIAPFDVLSLRHDGPVATIG----QTFRSLMTMLRCD 181 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 + G+ P+ KD A +D P+ L+GG Y + Sbjct: 182 ENAVMDQRVGICVRDPA-VKDSFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLI 240 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + +YG +P R + +E Y A +L+IPIR+ Sbjct: 241 GPYALISPTFRALYGGWLPQSGYLRDRRPALELYRLPLVAGLQQT---CVTDLMIPIRK 296 >UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ILS3_9CLOT Length = 280 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 105/291 (36%), Gaps = 21/291 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E HL+ + ++ Q F +TG + Y+R R+L+ Sbjct: 1 MDWVDRMNQAIHYVEDHLNNKIDEKEISRITACPFSLFQGSFTQITGIPLSEYVRRRKLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--PL 118 +A L+ T ++D+AL+Y + S F+ AFK+ TP+ R+ F R L Sbjct: 61 CAAYDLQNTEEKVIDVALKYGYQSSDAFSVAFKRLHGITPSDARKDGVKLTFYCRLDFAL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + ++ + ++G+ ++ + + + + + G + Sbjct: 121 IIKGVDRMDYTIIERTPFNVMGIRRTTPYGGGTWAIVKSDGSNEAIKETTGRFYDL---- 176 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG--V 236 GL + +D Y + D+ + ++ F +G + + Sbjct: 177 -GLCFSFGEDGSND-----YMCGIEWDK--EPIEGLDIFKYPEATWLKFEAKGSISSQVL 228 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + MP + IE+Y +DA E+ IP+ Sbjct: 229 GSVWQRINNEFMPQSKYKKTGLPTIEKYVLWDDAADI-----CNVEIWIPV 274 >UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=Clostridiales RepID=A9KR86_CLOPH Length = 298 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 110/306 (35%), Gaps = 32/306 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ I + ++E H+ + ++++ VA++ GYS +H R+F G ++ YIR RRLS Sbjct: 5 LNYREDIETCVEYIEEHIKENITMEEVASQIGYSLYHFSRVFSLCKGISVMEYIRNRRLS 64 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L R I+DIA Y F++ F +F+ F +P + + A + + + Sbjct: 65 LAATQLFQ-GRKIIDIAFDYEFETPSGFANSFRNAFGYSPTQFMKRMAGYAET-KTTVEI 122 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 G + M V + + G Y D + FW ++ G + +Y Sbjct: 123 GGYIM-NPAIVKRPEFMVAG----YGIKTNITGDAYTKDVASFWSNYDGEN--LESKMYK 175 Query: 181 L------NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY----- 229 + E ++ Y + + V++ Y +FT Sbjct: 176 ILNPKKHGEVGLCVPLSEDGNAIYLLGVIVEDFSKVEEDMLTVVVPEAVYAVFTTPPVDT 235 Query: 230 ------EGLGTGVQEFILTVYGTCMPMLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCE 282 + + ++ + + D E Y + + Sbjct: 236 TKDMEQKEFAKIIASTWKYIFEEWFKDSGYVYDESKLDFEYYDERC-----HHRQDTVMD 290 Query: 283 LLIPIR 288 + +P++ Sbjct: 291 IYVPVK 296 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 21/292 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 ++ L ++E +LD+ LS+++++ + G S+ HL R FK G ++ I RL ++A Sbjct: 3 EKLKAALNYIESNLDKSLSIESISTQVGMSQSHLHRKFKAELGLSLYELIILLRLKRAAY 62 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP------- 117 L ++DIA + + S Q FTRAF+K F Q P+ +R+ W + + Sbjct: 63 QLAYRQTKVIDIAFEAHYKSHQAFTRAFQKVFKQAPSAFRKRANWFFWQQKYDPFLALRK 122 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIP 175 + + + T + + + +T + H F W P Sbjct: 123 INMNDNTCFNVELIEFHTLSIAYLTHKGH------PNQLHRSIQTFIDWRRARA-LPPHK 175 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM--LQGGEYVMFTYEGLG 233 + L P + + ++ + M + G Y Y+G Sbjct: 176 SRTFNLLYHDPKRVEPEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDD 235 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 + + I ++ + R D + ++ + Sbjct: 236 DQLDQAIYYLFNLWLEQSGEKLR---DFPLFIERVSFFPDVAANKAISDIYL 284 >UniRef50_A6M0H0 Transcription activator, effector binding n=2 Tax=Clostridium RepID=A6M0H0_CLOB8 Length = 297 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 123/302 (40%), Gaps = 28/302 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I + + ++E +L +SL +++ G SK++L R+FK +TG +I Y++ R+L+ Sbjct: 3 DLKETIIETVAYIEDNLYNKISLADISLHTGISKYYLHRIFKSLTGESIMEYVQGRKLTS 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF------GIR 115 S L T I+DIAL+Y FD +Q++ RAFKK F TP R + Sbjct: 63 SLNELINTTMRIIDIALEYGFDYEQSYIRAFKKCFGHTPLKIRSDKISLSLILKEKINCN 122 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 L +G +FV + LIG+ +S + + DF N Sbjct: 123 DILSIGNSITYNPQFVFKQKFNLIGIKHKI------LSKSGDKSANSYGRDFFYNHKHKI 176 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG---- 231 L +E D + ++Y ++ + + + +YV+F + G Sbjct: 177 NNLINPHEYFGFTDWGSDDFIYYIPSVQVSDINTIPEGMISISIPAHKYVVFRFVGFFRP 236 Query: 232 ---LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI--P 286 G + ++ +Y + R+ +++++ D CEL + P Sbjct: 237 DDLNGRHLGRLLVQLYRKWIFKSGYKFAATF---RFEYIDNSRSKDN----YCELYVYQP 289 Query: 287 IR 288 I Sbjct: 290 IE 291 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 113/288 (39%), Gaps = 9/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +R LL LE + +PLS VAA YS ++ R+F+ V +IG YI+ L ++ Sbjct: 6 HIERLRSLLNLLENNFTKPLSSSEVAAATFYSYRNINRIFRAVFHKSIGRYIKELLLQEA 65 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA---FGIRPPLR 119 A L + + I DIA + + Q F +AF+++F +P+ +R+ + + P Sbjct: 66 ARRLAYSDKAITDIAFELNYSDLQAFNKAFRREFDCSPSQFRQQEKKDMKAWINTKLPEE 125 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + E + +L T ++ +T + + + I+D + + L T Sbjct: 126 IKELDRLTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTH---YL 182 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 G KD+ L Q+ + ++ G+YV T++G + Sbjct: 183 GELMDDDEIVKDENCRYNAAITLPQEAVFEPTGFFNTKTIESGQYVCVTHQGDRNKLDTV 242 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + +E Y E +L E+ +P+ Sbjct: 243 YEQIFLHWIVKNEFEIVDKPFLEFYLNDE---TDTATKDLLTEIYVPV 287 >UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787EAC Length = 447 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 125/300 (41%), Gaps = 24/300 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I++ + ++E HL +PL+L+ +A A S +L R+F +TGH + YIR RR+S Sbjct: 1 MQTGEIVQRAIDFVEDHLTEPLALEEIAGVAAMSLPNLYRLFHSITGHPVKEYIRKRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP---EWSAFGIRPP 117 ++A LR T P +DI + F+S F + FK+ TP YR++ + + Sbjct: 61 EAASCLRNTDLPTIDIGYRCGFESYPAFMKTFKRCTGLTPGAYRKARLVYSFERMNLNER 120 Query: 118 LRLGEFTMPEHKFVTLEDTPLI---GVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + +F + T L+ G+ ++ E+ ++ + + Sbjct: 121 ITFMGERDASERFPEVRITRLLPRKGIGCLFAAEHEKG---IETAAIDYFRTLMSSHHID 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHP----VMLQGGEYVMFTYE 230 L + D +DE + F LA D + + HP ++L GG Y + Sbjct: 178 IHE---LRLFGWNVDLEDESKPFGYQLLAVDVKERARMMNHPELQAIVLDGGLYAVVRTP 234 Query: 231 GLGTG-VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + +Q ++ +P + K +E Y ++ +R +L +P+ R Sbjct: 235 SVAEDCIQNTWNRLFSEWLPRSVFEQGKHHFMEEYVL-------NKNQIVRMKLYLPVER 287 >UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA n=49 Tax=Enterobacteriaceae RepID=YKGA_ECOLI Length = 239 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 4/209 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + I++ LL W+E +L+ P+S++++A K+GYS+ ++Q +F++ +G YIR RRL Sbjct: 12 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLC 71 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A+ +RLTA+ +LDIAL FDSQQ+F+R FKK F +P YR W I P + Sbjct: 72 RAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLI 131 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + E + + +TP+ G + Y + + D ++R + N T +Y Sbjct: 132 RQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKT---DIY 188 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQAD 208 ++ PS D V + AD Sbjct: 189 FVSTFEPSTKSVDLLTVETFAGTVCEYAD 217 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 113/288 (39%), Gaps = 17/288 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I ++ +LE + DQP+S+ + + YS ++QR+FK G IG + + ++ Sbjct: 3 DSLNCIYRVINFLEKNYDQPISVKELEEVSHYSYRNIQRIFKYSCGETIGGFQQRLKVEN 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + T + IA++ F + +F++AFK+ F +P R++ E G L + Sbjct: 63 AYKRILYTKENLSCIAVEVGFANIASFSKAFKQHFGISPKAARQNKEELLCG-HEILPIT 121 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-PTIPPVLYG 180 + E + V L+ + + + + + +E W F+ N +G Sbjct: 122 SDVLLEPEIVYLKPMQVYYQSTN--------TYYNNEEIEVLWEKFMENKFHDSGTEYFG 173 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P E Y + + + ++ GG+Y F + G + E Sbjct: 174 VIADEPLI--KTEISCRYDACSSMQSENKKLP---SKIIFGGKYARFIHPGSYETIDETY 228 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y + L IE+Y + + +L+P++ Sbjct: 229 TKIYSRWIFHSELEFSHTPIIEKYERYSE--HAENEEEQLTYILLPLK 274 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 113/292 (38%), Gaps = 15/292 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I+ +L++++ +L + L L VA KAG S +H RMFK+V G + Y+ +L K+ Sbjct: 19 NLEIVIPILVYIQANLHEDLDLKVVAKKAGLSPFHFHRMFKNVVGETLKQYVLRIKLEKA 78 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI--RPPLRL 120 A AL+ IL I+ + F + ++FTRAFK++F TP YR+ + R Sbjct: 79 AFALKYWDEKILSISNELGFKNPESFTRAFKREFQYTPKDYRQQFRKGELSLEERHSFLN 138 Query: 121 GEFTMPEHKFVTLED---TPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + E VTL+ + + + F +++ N Sbjct: 139 QMTNVFEISPVTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRN----DCF 194 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT-GV 236 L G+ P+ + + DQ L+GG++ TY G + Sbjct: 195 LLGVGHDAPTITPKELLRFD--CCIEVDQPFHSEGKISYQQLEGGQFATVTYVGPYGMNM 252 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +Y N+ +E Y + + ++ +PIR Sbjct: 253 KHAYQKLYQEIQHNKNIEFVGLPVVEIYRTTTINPSYKLN---QTDIYVPIR 301 >UniRef50_C6CRD1 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=C6CRD1_PAESJ Length = 303 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 101/307 (32%), Gaps = 34/307 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L+ + + +A A S + QRMF V + YIR RRL+ Sbjct: 1 MDWLQRMNLAVEYIEDNLEHDIDYEQIARIALCSVYQFQRMFSFVLEIPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L+ + DIAL+Y +++ ++F+RAF+ TP R + R + Sbjct: 61 LAAFDLQDRKNKVTDIALKYGYETPESFSRAFQNLHGLTPTAARLAGSPLKAYPRLSFQI 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP--- 175 L ++ V E + G+ Y ++ I++ + W + N Sbjct: 121 ILKGVAEMNYRIVEREAFQVFGLEDIY--GMDNIANQDGITIPEIWQNISKNGEFDRLFH 178 Query: 176 ------------PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 G S Y + + + + Sbjct: 179 SLAGDWRAEGRFGKELGEVFAFDSYRFTSNTTFPYLIGCYKSAGST-IEGYTVIDVPAST 237 Query: 224 YVMFTY------EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 + +F+ G ++ ++ + G + E Y Sbjct: 238 WAVFSTLNDGNGSGNY-DLRSLKNRIFSEWLQTSKYHIIDGGNFEMY-------CTHPSG 289 Query: 278 NLRCELL 284 + CEL Sbjct: 290 DEYCELW 296 >UniRef50_C5EKR4 AraC-family transcriptional regulator n=2 Tax=Clostridiales RepID=C5EKR4_9FIRM Length = 295 Score = 166 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHL---DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 M+ ++ ++ +E HL ++P+ + ++ AG S Q++F + G YIR R Sbjct: 1 MEWNEKLQLIIDHVEHHLQAREEPVDREEISRIAGCSFDFFQKVFSYMNGMGFAEYIRFR 60 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 +L+ + L+ T I+DI+ +Y ++S +FT+AF++ P R + + P Sbjct: 61 KLTLAGYDLKSTDMKIVDISYKYGYNSPTSFTKAFQQFHGIPPKEARENE--VKLRVMPK 118 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFLGNAPT 173 L++ + + LIG T SC+ E+I F +E + + L + T Sbjct: 119 LQIAQRRQFSWQVQRKAGFRLIGKTIRVSCADGEHYEKIPGFWNECQKDGTYPVLRSLDT 178 Query: 174 IPPV-LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 ++GL S D E+ Y+ + D++ LTG + L + +F G Sbjct: 179 GAQKGMFGLF----SLCGGDMDEIEYSIMVISDKSLPPGLTG--LELPEQTWAVFDCRGP 232 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +QE + G + ++E Y + ++ IP+ Sbjct: 233 VPKAIQEGWKYLNGEWLVRYPFRHAPCPELEWYSDGNPYG-----EDYLSQIWIPV 283 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 117/302 (38%), Gaps = 24/302 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + +L ++E +L+ LSL++++ KA YS +H R+F + G + Y+ +R+ + Sbjct: 9 EYIRRVNFVLDFIEKNLEADLSLESLSKKAYYSPYHFHRVFSTIVGENLNQYVNRKRIER 68 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +++ L + PI ++A Y F+S+ +F+RAFKK + +P ++ + + I Sbjct: 69 IASILLIRSDTPIKELAYIYGFNSESSFSRAFKKYYGISPTRFKLEGKNTLRKIGIEFFT 128 Query: 121 GEFTMPEHKFV-------------TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF 167 E + + L++ L GV + + F+ M + Sbjct: 129 TEKYICSIDHIKKWIEMNAQIVITELQEIKLAGVMHIGEFD-KAGNMFQRLMEWGAKKRV 187 Query: 168 LGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 L + +Y P+ + + +++D P+ L+ G Y + Sbjct: 188 LATSDFKAITIY---HDNPNVTQTSKLRFSTCITISEDINAD--GEIRPINLKKGIYAVG 242 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +E + + + R G E Y+ + ++ IP+ Sbjct: 243 HFEIKADEIPTAWKNMC-IWVIENGYEFRDGDYFEMYH---NDHKTHPDQKFILDICIPL 298 Query: 288 RR 289 R Sbjct: 299 ER 300 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 87/286 (30%), Gaps = 16/286 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + +L WL H L +A A S +H R+++ + G + + R+ ++ Sbjct: 9 YAARLEPVLQWLARHPQATPDLYRLAELACLSPFHFHRVYRALMGETVSDTAQRMRMQRA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L + +A + + S +FTRAF + P YR E Sbjct: 69 ALELTRGQDDLSRVAQRAGYQSLASFTRAFSASYGAPPGRYRAQHLLKR-------STRE 121 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 M V+ L + + ++I + + + L G+ Sbjct: 122 SVMYSVNLVSYPGLTLAAL--PHQGDYQRIGESFDRLALLAVNQGLIAPHAESGPWIGVY 179 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P Q + A D +++ + Y G T + Sbjct: 180 YDDPRQVETGRLRSHACVASKGAPGD----PLQTLVIPAMRCGVVEYLGPYTEIDHAYDW 235 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ +P D + + L + +P+R Sbjct: 236 MFSEWLPASGEEP---LDFPMFEEYANDPKTTPAAALLTRIYLPLR 278 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 112/293 (38%), Gaps = 18/293 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +A I D++ ++ ++D +++D + + SK+HL R+FK+ G I I++ RL K+ Sbjct: 9 RAKISNDVMNYIYKYIDTNINIDELCLELKISKFHLHRIFKEEFGKNIYESIKSIRLEKA 68 Query: 63 AVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 A L I DIA + SQ +F R+FK++F TP + ++ + + + ++ Sbjct: 69 ANLLITNRYSTITDIAKMTGYSSQTSFLRSFKQRFLMTPKEW-KNGGYKEYSNKIVEKIS 127 Query: 122 ------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 +F+ E V + + G + + I +++ + + + + Sbjct: 128 TNSQAIDFSNIEPSIVKMPEIK--GYYIRHKGYDKSIKKTWQKLQTWIYTNDIKEYKQM- 184 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 L+ P ++ + L + +++ G Y F+ G Sbjct: 185 ----ALHHDNPIITPLEDCQYIAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGD 240 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V + I VY T + Y+ + +PIR Sbjct: 241 VIKLIQWVYHTWLIESGYETTPNPSYTIYHK---NHFLSDDGEFILDYYLPIR 290 >UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=Bacillus RepID=C3LC07_BACAC Length = 296 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 15/233 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I+ + ++E + + +L N+A AG+S+ H R+F+ + G + Y+R RRL+++A L Sbjct: 8 IQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQL 67 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT-- 124 T I+DIA ++ F S +TFTRAFKK F TP+ YR+ + ++ + Sbjct: 68 SHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPY 127 Query: 125 ----MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN--APTIPPVL 178 E++ V + + G Y H+ FW ++L TIP Sbjct: 128 LGGIQMEYRIVNKPEFLMAG----YELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIPNRK 183 Query: 179 YGLNETRPSQDKDDE---QEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 D + Y + + Y +FT Sbjct: 184 DTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFT 236 >UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR2_ECOSE Length = 276 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 25/285 (8%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I++ +++W+E +++ + +++VA GY + ++Q +FK ++G YIR R+++++A Sbjct: 11 IVQHIILWIEDNIESTIKIEDVATITGYCRRNVQLIFKRYVHISLGEYIRRRKIARAAAL 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE--- 122 L+ + ++DI+++ FDSQQ+FTR FKK P YR W+ + PP G+ Sbjct: 71 LKTSTLNLIDISIRLHFDSQQSFTREFKKILGVPPQKYRNRNYWNLPYLCPPYIWGKAIS 130 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 FT E + L + G +YSC R E + + + I YGL Sbjct: 131 FTFLELSEMVLTTDVIPG---NYSCF------SRKETIMSYIDKYKADVYCISG--YGLQ 179 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + D D Y D+A + + G Y F Y+G Sbjct: 180 QKIGDLDYRDN----YIATTKNDKAHCK-----KLTIPSGLYAKFLYKGTWRDFLRLPKY 230 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y T +P L DI + P DA + C IP+ Sbjct: 231 LYLTLLPAHGLAHMDACDI-IHIPYPDAGLVKNNE-IECTYYIPV 273 >UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ2_PROMI Length = 285 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 125/292 (42%), Gaps = 20/292 (6%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 II D+L W+E +L +P+S +V K+GYS+ + Q +F T I YI +R+LS SA+ Sbjct: 4 KIINDILDWIEDNLTKPISTIDVIKKSGYSQRYFQDLFLHKTKSTIAKYILSRKLSMSAI 63 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 L+LT I +I+ Y F SQQ F+RAFK+ F TP YR+S W RP ++ +F Sbjct: 64 LLKLTRYSISEISNDYSFTSQQNFSRAFKRYFKVTPEFYRKSKFWDFRYYRPQHKVFDFK 123 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 + + L L+ + F + N I + + Sbjct: 124 KINCQLIYLSKDRLLDNNSDDFKFFDISIPFDFKSNIAIEGLGYKNKKQIEIIKSLV--- 180 Query: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVML---------QGGEYVMFTYEGLGTG 235 +D V Y L+ + + + + +G +Y +F++ G Sbjct: 181 ---DSSNDNLCVSYNYFLSSKVKNKITVKYNIKYIHDYNFSFNKEGLKYYLFSFLGSWED 237 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P+L RR G DIE + ++ D+ I LIPI Sbjct: 238 YMILSNIIYMRELPLLQAKRRDGYDIEIF----NSGKLDKNI-CSLNYLIPI 284 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 113/286 (39%), Gaps = 17/286 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + L ++E + DQ +S++ + + YS ++QR+F+ G IGAY + R+ + Sbjct: 8 NLNCVYNTLSFIEKNYDQLISIEQLEDISHYSYRNIQRIFRYTCGETIGAYQKRLRVENA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 L + I IAL+ F + +F++AFK+ F +P R + + F L + Sbjct: 68 YKILLYSDHSISAIALKVGFSNVASFSKAFKQHFLISPKEAR-AGKTPLFMKADILPVEA 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-PTIPPVLYGL 181 + + + + + T + + I+ E+ Q W FL N P YG+ Sbjct: 127 TQILQPQIIYVRPTTVYYRS-------SFINYIDTEIESQ-WDTFLQNEFPEQGNDFYGI 178 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P ++ Y T + + + GG+Y FT+ G +++ Sbjct: 179 VADEPLIRENLNCR--YDTCSSLQSLTSRLP---SKTIGGGKYAQFTHYGRYETIEDTYS 233 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y + L IE+Y D D + +P+ Sbjct: 234 QIYSGWILTAGLRFSHTPVIEKYTRHPDNT--DSVEEQITYIWLPL 277 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 114/305 (37%), Gaps = 28/305 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + +L ++E HL++ LSL+ +AA A YS +H R+F+ V ++ YI +R+ K Sbjct: 10 DHIKRLNKVLQFVEDHLEEELSLEKIAAIACYSPFHFHRIFRSVVNESLNVYIVRKRIEK 69 Query: 62 SAV-ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPL 118 +A +R I ++++ Y F+ +F+RAFKK + +P+ +R S I Sbjct: 70 AASILIRKPGISITELSVMYGFNGNTSFSRAFKKYYGMSPSDFRAQAPGRHSKICIEERK 129 Query: 119 RLGEFTMPEHKFVT-------LEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA 171 T E F +E L+ + L IS + + + + A Sbjct: 130 NGKGKTFFEPYFWDMDNHITWMEARALVEIKTLPQLELAYISHIGDQGQAHTFQKLMEWA 189 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV---------MLQGG 222 GL T + F TA Q + ++ PV + G Sbjct: 190 GQA-----GLLRTPDFTLLKIYHDSFRITASEQVRMSACIVLKEPVSTDGLVGTMTMPSG 244 Query: 223 EYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCE 282 + V+ E + ++ + + E Y + + + + Sbjct: 245 KCVVARMELAMDEFGKAWTELF-VWLNRNGYKTTERNCFEIY---GNDPSTHPQHHFIVD 300 Query: 283 LLIPI 287 L IPI Sbjct: 301 LCIPI 305 >UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LRE5_ESCF3 Length = 266 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 19/283 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ W+ +++ P++++++ +GYS+ HL +F TGH++ Y+R +RLS +A L Sbjct: 1 MINIFAWINKNIESPINVEDLVKISGYSRRHLHTLFMQYTGHSVAEYVRLKRLSYTAHLL 60 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW-SAFGIRPPLRLGEFTM 125 +LT +LDI+L+Y +DS Q+F+R FK+ + TP YRRS +W P + Sbjct: 61 KLTNLSVLDISLRYHYDSPQSFSRVFKRYYQMTPLAYRRSQQWGKKIHFVDPSERTDVV- 119 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 + FV E G + + DF + Q + + ++ Sbjct: 120 --YDFVYYEGDTFSGSLHQFHLDMSSRLDFWQKAAMQINDMKFRSLQHTSQIRSSVS-YY 176 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 PS V Y D A+ + + G+Y+ + G+ + +Y Sbjct: 177 PSLHSKSSMVVDYVY---DDGANSKTD----IAIASGDYIKISRRGILNDMVGLPNVLYR 229 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + NL R G+D E D+ + IP++ Sbjct: 230 NILYAHNLIRGNGRDFEIIE-------RDKGHTINFSYYIPVK 265 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 100/281 (35%), Gaps = 33/281 (11%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 L +LE H + L +A AG S WH R+++DV G + ++ RL ++A + Sbjct: 12 RALHYLENHYTDSIDLQRIADAAGLSPWHWHRLYRDVMGETLHTTVKWMRLHRAAWLISY 71 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 T +P DIA + +++ Q+F R+F+ + +P YR RPP R Sbjct: 72 TDKPFADIARECGYNNAQSFARSFRDAYGLSPQQYRE---------RPPPRYPVHLETRA 122 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 VT+ G Q + Q+ L A T + ++ Sbjct: 123 -PVTVAMLAHSGECQRLGDTFYQLESLLR----------LRGAETSQARAFSIHPAIDPL 171 Query: 189 DKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 D ++A + A + G + GG Y + + G + Sbjct: 172 HADKH----VAASVAPEYAMAPLQAGE---IAGGRYAVLRHRGPYADLDSVYDWFVQEWF 224 Query: 249 PMLNLTRR-KGQDI-ERYYPAEDAKAGDRPINLRCELLIPI 287 P I E Y P+ D + R ++ IP+ Sbjct: 225 PAAGQHIASDRPVILEYYDPSSDIPVQQK----RVDICIPL 261 >UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root RepID=Q187G0_CLOD6 Length = 288 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 14/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + +LE LD + V +GYS R+F +T + Y+R+RRL+ Sbjct: 1 MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-RSPEWSAFGIRPPLR 119 ++A+ LR T I+D+A ++ ++S +F AFK TP+ R P ++ L Sbjct: 61 EAAIILRDTDEKIIDVAFKFGYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALS 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + + + GV Q + + + ++ + H+ + N T + Sbjct: 121 VRGGRSMNIRIQKKKAFTVAGVNQQ-NINSSICASLWQKLFSKVSHEEMLNLGT--GEVV 177 Query: 180 GLNETRPSQDK---DDEQEVFYTTA-LAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GT 234 G+ S D D + Y + D + + + EY + G Sbjct: 178 GVCHDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPE 237 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + P D E YY + + EL IP+ + Sbjct: 238 CIHNGWKYAMEVFFPEHGYVHSGKPDFEYYYE-----GDMYSKDYKMELWIPVCK 287 >UniRef50_B0MC81 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MC81_9FIRM Length = 288 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 115/296 (38%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLD---QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 M+ ++ ++ ++E HL +P+ ++ A S Q++F + G + Y+R+R Sbjct: 1 MEWNEKLQMIIDYIEHHLQRVQEPIDPGEISKIAECSFGFFQKVFSYMNGISFAEYVRSR 60 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 +L+ + L+ T + ++D++ Y +DS +FTRAF++ +P R S + + P Sbjct: 61 KLTLAGYDLKSTDQRVVDVSYLYGYDSPTSFTRAFQQFHGVSPKEARISK--TKLKVVPK 118 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHD-----FLGNAP 172 +++ + LIG + + C E+ E + + + Sbjct: 119 MQVSVKQEYTWRVEQKPAFRLIGKSIRFFCDDEEKPSKILEFWSECQRNGVFSCLISMDK 178 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 PP L+GL ++ +E + A + +GY ++ + +F G Sbjct: 179 GEPPGLFGLFHNV--EESRNEMQYSIMAAADGEVPEGYG----EFLIPETSWAVFDLSGP 232 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + K ++E Y + N ++ IPI Sbjct: 233 VPQAIHSGWKYLEEEWLVKYPFRHAKCPELEWY-----SSGNFYDKNYLSQIWIPI 283 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 12/261 (4%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I + +E ++P L+ +AA A S QR F++ G + G Y+R RL ++A+ Sbjct: 53 RIVKAIRLIESTTEEPFPLERIAAHANLSASRFQRRFQEAMGESPGEYLRRTRLDRAAIF 112 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L ++ +L IAL + S + F RAF +QF P YR+ ++ + P E + Sbjct: 113 LIISQESVLSIALSTGYASHEAFIRAFHRQFGLVPTQYRQFARRASTPLAP---EDEPRV 169 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 + + + P+ + + S + D P G+ + Sbjct: 170 AQVRVESFPSQPV--LAMRFYGSYALVEDNWRRFAECLDRAGF---PLADAQAVGIVQDN 224 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 P +D V Y A+ D ++L + + + + T+ Sbjct: 225 PEITPND--LVRYDCAIVDAGFDREHPALSRLILPAARFACLEHRAPYSHIFPVYRTIGS 282 Query: 246 TCMPMLNLTRRKG--QDIERY 264 P G +ERY Sbjct: 283 VWGPRSGECFGAGGTGTLERY 303 >UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Bacteria RepID=C3RPB0_9MOLU Length = 286 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 111/301 (36%), Gaps = 29/301 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L ++E + D+ + +D +AA A SK++ QR+F +T + Y++ RRL Sbjct: 1 MYAWQEIQVTLDYIEENYDKEIDIDKLAAIAHLSKYYYQRLFFRLTKKTVNDYVKLRRLE 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L+ T + ILDIA+ F FTRAFK+ + TP YR I+P L+L Sbjct: 61 KAANQLKNTEKRILDIAIACGFSGHSAFTRAFKEVYKITPDDYRNQKIHLDHFIKPDLQL 120 Query: 121 GEFTMP-------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 + E + + + + Y S D E + Sbjct: 121 NYVVIDTGVPLIVEGMVLEINEKQVCNDRIFYGKSKMAKVDELGEPKINNIVSLYQELDV 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 V+ + DD Y + D+ + ++ G+YV+ +YE Sbjct: 181 QDAVVVDILTLS-----DDPALFNYFVGIEIDRPS---IDCEQRIIPSGKYVVCSYEAEN 232 Query: 234 ------TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +Y L + Y P + N EL + Sbjct: 233 FESLVNEALYKASRYLYEVWFVEHRLEPDDLLVQKYYNPYQ--------ENCYIELWAKV 284 Query: 288 R 288 R Sbjct: 285 R 285 >UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-binding subunit n=13 Tax=Bacilli RepID=C2HEQ6_ENTFC Length = 298 Score = 160 bits (405), Expect = 5e-38, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 113/293 (38%), Gaps = 12/293 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ + L+ ++E HL + L+ +A G S++ L+R+F + G ++ YI+ RRL+ Sbjct: 10 INMLKDLNQLIDYIEEHLTESLTYKKIAENTGISEYQLKRIFTFIAGMSLMDYIKNRRLA 69 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY-RRSPEWSAFGIRPPLR 119 + L + + A +Y +++ + F+RAF+ P+ R + S + + Sbjct: 70 LANRDLL-GGEKVTETAFRYGYETVEGFSRAFRDWSGYLPSEISRYGIQKSFPRLTFFID 128 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY---QFWHDFLGNAPTIPP 176 + E + E ++GV + E ++ ++ + + + + P Sbjct: 129 VRGGKSMEFRIEKKEQFYVVGVAKKVPVQFEGVNQEIQKLVQTITETQREEMHKLGDLYP 188 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 D+ +E+ + + ++ + +F +G Sbjct: 189 HQVINVSYGFDGDRLEEKGSLMHMIGFATTKENPYADLEMLAIEEHTWAIFPNKGPFPQT 248 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q+ +Y +P + + +I K G+ ++ E+ I ++ Sbjct: 249 LQDTWGKIYAEWLPSSDYELVEAPEI------SFTKWGEDFSHVYSEIWIAVK 295 >UniRef50_D1P760 F1 operon positive regulatory protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P760_9ENTR Length = 292 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 18/288 (6%) Query: 1 MDQAGIIRDLLIWLEGHLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M + I+ + ++E +++ + + ++ + + +GYS+ +LQ++FK+ G +IG YI+ RR+ Sbjct: 1 MIKNLIVNSVTQYIEENIEIKHIDIEGLVSYSGYSRRYLQKIFKNKIGFSIGKYIQLRRI 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 S++AV LRLT+ + I+ + +DSQQTFTR FKK TP YR + + G+ R Sbjct: 61 SRAAVLLRLTSLSLSSISTRLCYDSQQTFTREFKKNTGYTPLQYRNNKLLTFQGM-IGHR 119 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 P K ++ + G + L + + ++R + + L +A T+ Sbjct: 120 DTNDLFPYPKLYHIDKKTIDGFLFKHKEKLPYTGE-QSKVRLREINKRLISAKTVYL--- 175 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 + S KD V TT + + + G Y F + G F Sbjct: 176 ---SNKISLGKDFNNGVLITTIIWTNSEQ----VNTQFEINSGLYAGFLFTGSHKSYSHF 228 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 I +Y +P NLT+R DIE ++ + IP+ Sbjct: 229 IYHIYMNLLPFYNLTKRDEFDIEIISKEDNTCTS-----FSFQCYIPV 271 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 104/289 (35%), Gaps = 24/289 (8%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 + L ++ ++ PLSL +A +AG S H R+FK+ G + I++ RL K+A L Sbjct: 15 NALYYIYSNISAPLSLQELAKEAGVSAHHFHRIFKEEQGQNLYETIKSIRLQKAANLLLS 74 Query: 69 TARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM-- 125 I ++A + S +F +AFK +F TP +R + L M Sbjct: 75 NHYSTISEVAQLCGYSSSASFIKAFKGRFHLTPREWRHGGHRQYA--KEILSTSSAAMAS 132 Query: 126 ------PEHKFVTLEDTPLIGVTQS-YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 E + + + Y+ S+ ++ M + F H A I Sbjct: 133 QRSFLGLEPTIKKIPAFRAVYLRHKGYNKSIAL--SWQKLMAWGFEHQISSQARQI---- 186 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 G++ PS E Y AL ++ + +F +G V Sbjct: 187 -GIHHDNPSITPLAECR--YIAALEVEEGFRAQGLLGVMEFPPTLCAVFEVQGRYGDVLG 243 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 I VY +P + + I + + D N + + +P+ Sbjct: 244 LIDYVYHEWLPQSGY---EAKTIPAFALYQKNHFLDPLGNFQLDFCLPV 289 >UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=Enterobacteriaceae RepID=C8QFY6_9ENTR Length = 142 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 66/118 (55%), Positives = 84/118 (71%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II L W++ +LD+ LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ Sbjct: 1 MMQEEIIHSLTHWIDQNLDKTLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 +A ALR T RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + A RP L Sbjct: 61 LAAEALRQTQRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTAYRHTMRRQAMIQRPRL 118 >UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQS1_BACS4 Length = 301 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 26/303 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+D ++E H+++ ++++ + + YSK+H R+FK V G ++ Y++ R+L+ Sbjct: 1 MDYLEKIQDFSDYVEAHIEEDMNINAIINQLYYSKFHFYRVFKAVVGLSVHEYVKRRKLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-------SPEWSAFG 113 ++A L T IL IALQ+ F SQ+ F R FKK + P +R+ + + Sbjct: 61 RAADCLLHTKDSILTIALQFGFQSQEVFIRNFKKIYGVPPGKFRKVQIPMRSNNRINVES 120 Query: 114 IRPPLRL-GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 IR ++L + T+ D L+GV +SD + +F A Sbjct: 121 IRLNMKLAKGKAIVNEHLETINDLMLVGVIHR-------VSDSNPLSIIERMTNFFTKAH 173 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYT---TALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 +P L G N R D D E A+ ++ V +T+ Sbjct: 174 LVPNQLNG-NVYRVCLDFDTNNEAASFQELIAIEVSNLSQIPDGMVGKVIDNVHVVTYTH 232 Query: 230 EGLG-----TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKA-GDRPINLRCEL 283 +G + + +Y +P+L T IE+Y D +N+ + Sbjct: 233 QGKLFTEEEGKIIDTYHFIYQYRIPLLKATLTSDYIIEKYGKDFKGPYEDDAHMNISLSI 292 Query: 284 LIP 286 IP Sbjct: 293 -IP 294 >UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYK8_9FIRM Length = 309 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 19/272 (6%) Query: 1 MDQAGIIRDLLIWLEGHL--DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 ++ + + + ++E HL + L + +A +A S + +++F +TG+ IG YIR RR Sbjct: 7 LNWTEGLINAIDYIETHLIDGEVLDQNTIARQAYSSPDNFRKVFHLITGYTIGEYIRNRR 66 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 LS + L + R + DIAL+Y +D+ ++FT+AF + +P+ R + R L Sbjct: 67 LSLAGEELISSNRTVTDIALEYGYDTPESFTKAFTRFHGNSPSYVRNNKSGLHNFTRIVL 126 Query: 119 RL--GEFTMPEHKFVTLEDTPLIGVTQSYS-----CSLEQISDFRHEMRYQFWHDFL--- 168 R+ +M ++ V + + + G ++ ++ + I F E Q W + Sbjct: 127 RVTADGGSMLNYRIVKINNMCIAGYSRVFTSLDTAKNNVLIPKFTRECCSQSWDKLMEIK 186 Query: 169 GNAPTIPPVLYGLNETR---PSQDKDDEQEVFYTTA---LAQDQADGYVLTGHPVMLQGG 222 N L+G + ++ YT Q+ + + + G Sbjct: 187 SNNEKPNNCLFGYRSNDFINIDKFNNEISCFNYTFGRMITKQEISGLNISDYSITSIPDG 246 Query: 223 EYVMFTYEG-LGTGVQEFILTVYGTCMPMLNL 253 E++ F G Q +Y +P + Sbjct: 247 EWICFDCSDTTPAGQQSLWYKIYTEFLPFSHY 278 >UniRef50_UPI0001789679 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789679 Length = 289 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 109/295 (36%), Gaps = 19/295 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ II LI +E +L+QPLS+ +VA SK++ R+F + G ++ YI +RRL+ Sbjct: 1 MNHHRIIEQALIHIEENLEQPLSVSSVALTFNMSKYYFHRLFSAMMGCSLNQYILSRRLN 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-----SPEWSAFGIR 115 + + + DIA Q F +Q +FTRAFK+ + P+ R SP ++ Sbjct: 61 AALSLIHNNNLSLTDIAYQLAFGTQASFTRAFKQHYGVAPSSLRAGFNKISPTPIPTVVK 120 Query: 116 PPLR-LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 P + + + + ++T + G+ + + H + N Sbjct: 121 RPFKNMNGDVVTDFTLTEFKETRISGIAFEVDLATDDYKKKIHSHSKMLLNHIDDNIN-- 178 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 G S + + + D + V + F Y G Sbjct: 179 -----GSCFVIYSNCQPNSTRFKVLFGIPSDI-QIHKPFYFTVDVPTIFCARFNYFGDLL 232 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + T Y + + DIE D ++ + PI++ Sbjct: 233 DIGEVLKTDYARFLKISK-QESDQSDIELIQVFNDV----HNLDSTYHIYAPIKK 282 >UniRef50_C4L2T4 Transcriptional regulator, AraC family n=25 Tax=Bacilli RepID=C4L2T4_EXISA Length = 291 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 108/288 (37%), Gaps = 14/288 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + +L+ ++E HL + L + G S H +RMF ++G + YIR RR S + L Sbjct: 5 LNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIANEKL 64 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP-LRLGEFTM 125 + + +IA Y + S + F+RAF+ P+ ++ +F + + T Sbjct: 65 VHGS-SVTEIAYLYGYQSVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKGGTS 123 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI----PPVLYGL 181 E K E ++GV++ E +++ E+ + + + P Sbjct: 124 MEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKSITEEQRAHMHELGNLYPHRALNA 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFI 240 + ++E + + A + Y + + + +F G +QE + Sbjct: 184 SFNFDDGHLEEEGYLTHMIGFATTREIKY-DDLEVISIPKSLWAIFPNTGPFPNTLQETM 242 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Y +P + I +K N+ E+ +P++ Sbjct: 243 ARTYAEWLPSSGYALQDLPSI------SFSKIETGYDNVYSEVWVPVK 284 >UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KPU7_CLOPH Length = 294 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 23/299 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I D +I +E +L LSLD +A + G SK+H R+FK +TG + Y+R R+L+ S Sbjct: 5 NRKLIEDAVILIEDNLKTNLSLDEIAKQIGISKFHFHRIFKAITGSPLITYVRGRKLTSS 64 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-- 120 L I+DIA Y F+ +Q++ RAFK+ F TP+ +R+ R L Sbjct: 65 LNELLDDKLKIIDIAYDYNFEYEQSYERAFKQLFGLTPSAFRQKNCELPIVPRIDTSLLN 124 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQ--SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 + + + T+ L G+ ++ + + M + + +L Sbjct: 125 DISKGIVITPWYCTMPKFHLAGIKTLINHIENYNTATANSSAMDFYYNKRYLLQNAINEH 184 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG- 235 + YGL D +Y ++ ++ + ++ +Y +F Y GL + Sbjct: 185 LYYGLVTYHDFYTAD-----YYMPSVEVSESFDFNSIFTCQTIERSDYAVFRYVGLHSPE 239 Query: 236 ------VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + E + +P + + ER + K ++ PI+ Sbjct: 240 DLTMKLLSEIYEVIETVWLPTTSFKPTRQFHFER----MNQKICKED-YCEADIYFPIK 293 >UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BBL2_9BACI Length = 311 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 118/310 (38%), Gaps = 41/310 (13%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 +Q I +L +++ HL L L+ +A + YS +H QR+FK G + AYI+ RL Sbjct: 5 EQFIQITKVLEYIDQHLQDTLPLEKLAKVSTYSPFHFQRIFKSFMGESPAAYIKRLRLEN 64 Query: 62 SAVALRLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALYR---------------- 104 +A L PI ++AL F S FT +FK+ F+ +P +R Sbjct: 65 AAHLLIYEREIPITEVALMCGFSSISYFTYSFKENFSTSPKKWREGAYLELFPRVYQDSK 124 Query: 105 RSPEWSAFGIRPPLR--LGEFTMPEHKFVTLEDTPLIGV--TQSYSCSLEQISDFRHEM- 159 +S +S + EF + V + P+ QS E I D ++ Sbjct: 125 KSKLFSNIKKEEQQQNPYNEFRWLDLDKVRTIELPVCATVNRQSVGPYTEGIPDAWEDLY 184 Query: 160 RYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVML 219 + + + P +G+ P ++ A+ QD+ + G P L Sbjct: 185 HWTTSRELMKPDP----FTFGVPRNNPYITPPEKTRYDCRIAIDQDK----IPEGEPAFL 236 Query: 220 -QGGEYVMFTYEGLGT-----GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAG 273 +GG++V++ ++ + E +Y +P D K Sbjct: 237 FKGGKHVVYEFDEPVDYSERGRLIECYSELYSFWLPRSGYRYLDNP-----VELVDVKPL 291 Query: 274 DRPINLRCEL 283 +++ C++ Sbjct: 292 KGSLSVECKI 301 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 113/292 (38%), Gaps = 19/292 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++ H+D+ +++ +VA + +SK++ R+FK+ TG +I +I+ +L Sbjct: 1 MKTNEIVNRSITYIMKHIDENITIGDVAEQCHFSKYYFSRIFKNETGESIYGFIKRLKLE 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPP 117 +SA L+ R I DI Y + +++ FKK ++P +R + + P Sbjct: 61 QSAFRLKVERERTITDIGFDYGY-CPSNYSQVFKKHHNESPIEFRNNIFQHSVNHPFYPH 119 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT-IPP 176 ++ + E + + + +I ++ + + W +F I Sbjct: 120 AQVNIESFEECS----RKISIEIINDQFVIYERRIGNYNELI--EKWEEFTDKYKKYIDE 173 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 L T + Y + D + ++ GG++ ++ Y+G + Sbjct: 174 NTVFLERTFDDPSITSADKCIYDICM---TVDKNCDVENTCVIPGGKFAVYHYKGFPEQI 230 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ P++ + Y K + + ++ IPI+ Sbjct: 231 YTAYQNMFQVWFPVVKKRIDNRYGFDIY-----NKIDCDSMYMELDICIPIK 277 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 102/288 (35%), Gaps = 13/288 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I ++L + L+ S++ +A+ S +H R+FK+ G ++ AY++ +L Sbjct: 10 DHLERINEVLFRIHSDLEHNGSVEELASLVAMSVFHFNRVFKERVGESVHAYVKRVKLEH 69 Query: 62 SAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L + I F S +FT+AFK+ F TP +R E + Sbjct: 70 AANLLLFNPSATITHCMQAVGFSSNASFTQAFKENFGVTPTKWR---EVDKANEKRDFTF 126 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E ++ K T+ + V Q + ++ Q W G + Sbjct: 127 SEKSL-HVKIQTMPSFDVAYVRHKGYDRTIQ----QAWLKLQAWALGHG-VDFSDQRMIA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ + P + + L + + + + +F+ +G+ +++++ Sbjct: 181 LHHSNPRFVESSQCHYVACLELPKGREFYRSGDIGVMRIPQTFCAVFSLKGVYGDLKKYM 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y P + Y + + +P+R Sbjct: 241 DVIYHEWFPQSAYEKIALPSFAIYRE---NHFINADERFDLDFCVPVR 285 >UniRef50_P26950 F1 operon positive regulatory protein n=19 Tax=Yersinia pestis RepID=CAF1R_YERPE Length = 301 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 127/288 (44%), Gaps = 20/288 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQP-LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M + + ++ ++E +L+ +++D + +G+S+ +LQ FK+ G IG YIR RR Sbjct: 1 MLKQMTVNSIIQYIEENLESKFINIDCLVLYSGFSRRYLQISFKEYVGMPIGTYIRVRRA 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 S++A LRLT I++I+ + +DSQQTFTR FKK F TP YR P WS G+ Sbjct: 61 SRAAALLRLTRLTIIEISAKLFYDSQQTFTREFKKIFGYTPRQYRMIPFWSFKGLLGRRE 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + + L++ +IG ++ L S + R +D L I Sbjct: 121 I-NCEYLQPRICYLKERNIIGQCFNFR-DLVFYSGIDSKCRLGKLYDSLKKNTAIT---- 174 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 ++ P DK ++ + D+ + + + + G Y F + Sbjct: 175 -VSNRIPFHDKTND---IIARTVVWDRNKHF--SDSEIKVDKGLYAYFFFNDTYDQYVHH 228 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +Y +P+ NL +R G D+E D C +PI Sbjct: 229 MYNIYYNSLPIYNLNKRDGYDVEVIKRRNDNTID-------CHYFLPI 269 >UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Clostridium difficile RepID=Q18D16_CLOD6 Length = 303 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 121/310 (39%), Gaps = 34/310 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L +E +L + +S++ +A KA S ++ QR+FK + + YI+ RRL+ Sbjct: 1 MHAWESIQITLDLIEANLSEEISINELANKANLSPFYYQRLFKRLVNKTVMEYIKLRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +++ L ILD+AL + F S +TFTR+FKK + TP YR +P I+P L L Sbjct: 61 RASEYLAEHKNRILDVALNFGFASHETFTRSFKKAYGLTPEKYRANPVKLNHFIKPELIL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSY---------------SCSLEQISDFRHEMRYQFWH 165 + M + + D +I V + C L + + W Sbjct: 121 -NYAMVDEGVPLIADDIVIEVNRKTLSNPRTFVGIEIEVPICQLVGGETTGIAIVEELWM 179 Query: 166 DFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYV 225 IP + G NE + ++ A + ++ V L EY+ Sbjct: 180 KLGSQRHNIPNQIPGGNEFAALYMGNAKEGNCMYMAGVEVESGTSVEGYSTFELPVKEYL 239 Query: 226 MFTYEGLGTGVQEFILTV------YGT-CMPMLNLTRRKGQDIERYYPAEDAKAGDRPIN 278 + +E E + + + M NLT IE YYP P Sbjct: 240 VCGFE--AENFNELVNSAVFKADKFMERWMKKHNLTTTD-FAIEMYYP-------TTPEA 289 Query: 279 LRCELLI-PI 287 E I P+ Sbjct: 290 AYLEHWIVPV 299 >UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PRW6_9CLOT Length = 286 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 29/300 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D ++ L+ ++E +L LSL++++ YS ++ QR+F VT +I YI RRL + Sbjct: 3 DYLSVVNLLIEYIEENLQSDLSLESLSKLVNYSTYYTQRIFSTVTCMSIHDYITERRLIR 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + I+D+AL+Y + S FT+AFKK+F P+ ++ E + PLR+ Sbjct: 63 AGEEILNGG-KIIDVALKYGYSSHNGFTKAFKKKFGLLPS---KADECLDITVDKPLRIL 118 Query: 122 EFTMPE--------HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 E HK + LE+ L G + + + DF ++ + + + Sbjct: 119 ERDFYNKDGNLCICHKLIYLEELVLWG-----NIFVVNLKDFWNDDNMIRYVENKVISFI 173 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLT-GHPVMLQGGEYVMFTYEGL 232 + E + F + ++ AD G +++ YV F+Y G Sbjct: 174 RANESSSTYCIGILCSSNLEVQYFIGKIVHENTADVCKCNRGKKLVIPKSLYVKFSYRGN 233 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL---IPIRR 289 I+T C +T Y D L+ ++ +PI++ Sbjct: 234 IKENPNIIITDALKCFSTCGITP--------YQEKIDHIEIFTKSYLQTKIFDIVVPIKK 285 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 115/334 (34%), Gaps = 59/334 (17%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I ++L ++ H+D PL ++A A +S +H QR F TG+ + Y+ RL K+ L Sbjct: 22 IENVLTYINEHIDHPLLATDLADVACFSVFHFQRAFTLYTGYNVAEYVLLTRLRKAVYEL 81 Query: 67 RLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS------------------- 106 R + +LDIAL F Q+FTRAFK+QF Q P+++R+ Sbjct: 82 RYRPSMSVLDIALSCGFSHHQSFTRAFKRQFCQAPSIFRKQFVEYVRKSHAIPTHQAIVG 141 Query: 107 --------PEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSY----SCSLEQI-- 152 E + +++ K ++ + G + + L+QI Sbjct: 142 APANVSYFEELTPTTHSSCIKMLTVNENNGKHANKKEIKIRGAYMTDISSKNIPLQQIQV 201 Query: 153 ----------------SDFRHEMRYQF--WHDFLGNAPTIPPVLYGLNETRPSQDKDDEQ 194 + + QF W G +P Y + P +E Sbjct: 202 IDFPRTAIAFLTHEGDPEGVMKTVAQFIQWRKQYGPSPRT-SKTYNILYNDPRDVPKEEY 260 Query: 195 EVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLT 254 A + + ++ G F + G + E I +Y T + Sbjct: 261 RFD-VAASIRKVVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLNEDYE 319 Query: 255 RRKGQDI-ERYYPAEDAKAGDRPINLRCELLIPI 287 R ER D + ++ +PI Sbjct: 320 IRNAPLFVERVQGFPDVPENET----IIDIYLPI 349 >UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N339_9FIRM Length = 211 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 13/222 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I + L ++E HL + + + +VA +A S ++ Q+ F+ + G ++ YIR RRLS Sbjct: 1 MNWTDGISNALKYIEEHLKEDIKIVDVANEAYVSSFYFQKAFRILCGFSVAEYIRYRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP--EWSAFGIRPPL 118 + + T + I++IAL+Y +DS +FT+AF + TP + R+ S ++ Sbjct: 61 LAGSEVITTNKKIIEIALEYGYDSPDSFTKAFTRFHGVTPTVARKEQLMIKSFAPLKIQF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 L + ++K + E ++G + + D +FW + + +A + Sbjct: 121 TLKGGSTMDYKIIEKEAFTVLGKARRFDF------DCAFNEIPKFWGEHMQSADKKVCGV 174 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 YG+ + + ++ Y A + Sbjct: 175 YGV-----CIEDEKDEGFKYLIADEYVLDSEIPDGYEVCEIP 211 >UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Enterobacter cloacae RepID=Q6WFA3_ENTCL Length = 134 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 55/117 (47%), Positives = 81/117 (69%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 +++D++ W+E L L ++ +A K+GYS+WH QR+FK TG A+G Y+RARRL+ +AV Sbjct: 9 SVVKDIVQWVENSLTSTLLVEEIAEKSGYSRWHFQRIFKHATGIALGEYVRARRLTCAAV 68 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 L+LT + +L+IAL Y F+SQQTFTR+FK +F P YR+ W+ + PPL L Sbjct: 69 ELKLTTKTVLEIALHYGFESQQTFTRSFKNKFHLPPGRYRKQIAWNLSALCPPLLLE 125 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 11/279 (3%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL-TARP 72 ++ ++ SL ++ SK+H QR+FK + G + YI RL +++ L Sbjct: 17 IDSEPNEKYSLQELSDVVRLSKYHFQRVFKSMVGVSPHRYILLSRLRRASFELVYFKELK 76 Query: 73 ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE-FTMPEHKFV 131 I+DIAL F+S + FTRAF + F QTP +R+SP+WS++G R +R+ E K Sbjct: 77 IIDIALLAGFESPEAFTRAFVRLFDQTPTEFRKSPQWSSWGHRFNIRVPVREKKYEIKIE 136 Query: 132 TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKD 191 + +T LE + F + + ++F + P + Sbjct: 137 EYPSRECVMITHKGEY-LEGMKTFDILVSWLVENNFYSETSVKSIPFITIPYANPLESAG 195 Query: 192 DEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT--GVQEFILTVYGTCMP 249 + ++ + L + G + + TY G G I V +P Sbjct: 196 SDYRCDIAISIN-CKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNVLTEWLP 254 Query: 250 MLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCELLIPI 287 E ++ L ++ IP+ Sbjct: 255 ETQWEPLPAPILFEHI----NSPLFVPETELITKVCIPV 289 >UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Firmicutes RepID=C9AWD9_ENTCA Length = 300 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 123/311 (39%), Gaps = 37/311 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++E +L +PL ++ +A A S ++ QR+F + ++ YI+ RRL+ Sbjct: 1 MHAWEAIQKSIDYIEDNLTEPLEIETLAQVASLSVFYYQRLFTRLVKISVREYIKLRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + A+ L+ + ++D+A + F S F+R FK + +P+LY++ P +P L L Sbjct: 61 RGALLLKNQKKRVIDVAFEVGFSSHAVFSRTFKTVYRISPSLYQKKPIGLQNFDKPDLSL 120 Query: 121 GEFTMPE-----HKFVTLEDTP--------LIGVTQSYSCSLEQISDFRHEM--RYQFWH 165 G E + V LE GV Y + ++ R + + WH Sbjct: 121 GYIVTEEGIPLISEGVVLEIQKKSNPHPLVFYGVLGYYPFNYGKMLGQRTGIDPIEEIWH 180 Query: 166 DFLGNAPTIPPVL-YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 +FL P Y + + P E Y D + G T L +Y Sbjct: 181 EFLQKIANQPGKANYQIGVSFPGDAP--EGYSSYFVGQVGDDSQG--STFSEWTLPARDY 236 Query: 225 VMFTY----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDI--ERYYPAEDAKAGDRPIN 278 V+ ++ E L + + + + +D E Y E+ Sbjct: 237 VVCSFDTISEQLIINMGKAMRYT-RFWLKKKGWI---AEDFFPELYQERENHV------- 285 Query: 279 LRCELLIPIRR 289 + EL IP ++ Sbjct: 286 VHVELWIPFKK 296 >UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=Bacillus cereus group RepID=B7JL95_BACC0 Length = 299 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 64/104 (61%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + +I+ + ++E HL + L+ + VA+ + S +H R+F+ G ++ YIR RRL+ Sbjct: 4 EYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTH 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L T R ++DIA+QY F SQ+ FTRAFK+ F P YR+ Sbjct: 64 AAQVLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRK 107 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 110/319 (34%), Gaps = 40/319 (12%) Query: 2 DQAGIIRDLLIWLEGHLDQP---LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 D I ++ + L +P +LD++AA A S +H R+++ V G ++ ++ R Sbjct: 9 DYRRRIARVVEAI---LVEPGARHTLDSLAAIAHMSPYHFHRIYRAVMGESVVDTVKRLR 65 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-------------- 104 L+++A L A+ I +A +DS Q F RAF+ +P+ +R Sbjct: 66 LAEAAQRLTDAAQ-ITAVAHDAGYDSPQAFARAFRDFTGVSPSEFRTRQRHLVVNPAASE 124 Query: 105 -----RSPEWSAFGIRPPLRLGEF--TMPEHKFVTL---------EDTPLIGVTQSYSCS 148 R + R E +P + V L D P+ + Q++ Sbjct: 125 ASVGRRRTAQACAAQRGDGDESEQVPALPSVEVVELAPLDVLCQRHDGPVGTIAQTFRTL 184 Query: 149 LEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD 208 + + ++ Q +A Y SQ + Q Sbjct: 185 MTTLRCNQNPQLQQRVGICGRDATVASGFRYHAGIIAASQTAFSRAIERLDESAQQSCVT 244 Query: 209 GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE 268 P+ L+GG Y + G + +Y +P R + +E Y Sbjct: 245 EPPPGVVPLRLEGGLYAVHRLVGPYELISPTFRALYSGWLPRSGYRRDQRPGLELYRSLP 304 Query: 269 DAKAGDRPINLRCELLIPI 287 D A +LLIPI Sbjct: 305 DRGAL---QPCITDLLIPI 320 >UniRef50_A8FAK8 Possible AraC family transcriptional regulator n=2 Tax=Bacillus pumilus RepID=A8FAK8_BACP2 Length = 295 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 7/128 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I++ L ++E HL L L +A AGYS++H R+FK V ++ Y+R RR+++ Sbjct: 5 EHEKTIQETLNYIEQHLKDDLPLQTLAKHAGYSRFHFHRIFKKVIKKSVVDYLRERRMTQ 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L T + +DIA QYRF SQ++FTRAFKK + +PA YR+ +R + Sbjct: 65 AAKDLIHTDQRAIDIAFQYRFSSQESFTRAFKKIYDMSPARYRK-------LLRNVINEE 117 Query: 122 EFTMPEHK 129 E M +H+ Sbjct: 118 ETNMADHQ 125 >UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales RepID=B8HE83_ARTCA Length = 288 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 106/293 (36%), Gaps = 14/293 (4%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 ++ ++ +E HL + + + N+A G +++H++RMF + G + YIR RR++ +A Sbjct: 2 IAVLNRVIDSIEEHLTEEIEVANLAGGLGTTEYHVRRMFSSLAGMPLSEYIRRRRMTVAA 61 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPLRLG 121 + +L A+++ + S + F RAF+ +PA RR+ P + +R L + Sbjct: 62 ADVI-GDGDLLGTAVRFGYGSTEAFGRAFRAVHGISPADARRNGGPLRTQPQLRFRLTIE 120 Query: 122 EFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 T + + L+G + I + T P Sbjct: 121 GNTTMDTRIADRPAFRLVGHAARVPLIHQGPNPHIQAHIASLPAAEHARLKALCNTEPAG 180 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG-TGV 236 L ++ D + ++ Y +A + + + G + +F G + Sbjct: 181 LLQVSADV-DPDYAEGSDLTYLHGVAVSEGTPVPEDLDAIEVPAGAWAVFRTSGAYPAAL 239 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 Q P R G + D + EL +P+ R Sbjct: 240 QSTWAATAAHWFPSNPWRLRPGPSVVAILDRADDFSTAT-----TELWLPVER 287 >UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RX40_9CLOT Length = 140 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 65/114 (57%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 +Q +R ++ ++E HL++ L+L+ +A AGYS++HL R+F + TG I Y++ RRL+ Sbjct: 3 NQKHTVRKVIDYIEEHLEEKLNLEQIAEHAGYSRFHLNRIFMEETGGTIHKYVQERRLTM 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR 115 +A L T I IA + SQQ F+ AFK+ + P YR+ + R Sbjct: 63 AAEKLVDTDMDITQIAYDAGYQSQQAFSLAFKQVYLCPPGAYRKRGIYLPAKKR 116 >UniRef50_B9Y4X5 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=B9Y4X5_9FIRM Length = 307 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 114/311 (36%), Gaps = 32/311 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I++ L +E L + + + +A + S ++ Q++FK + ++ Y++ RRLS Sbjct: 1 MYTWEAIQEALDQIEKELPRGIKTEWLAEQVSLSPFYFQKLFKRLVHKSVQEYVKLRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + L R I +IA Y F S FTR FK+ + TP YR+ I+P + L Sbjct: 61 RVIEELNQEDRTITEIAYDYHFSSPANFTRVFKETYGITPEEYRKKRPRLNTMIKPDIAL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRH----------------EMRYQFW 164 + E+ + ++D L+ + + + E F ++ Q W Sbjct: 121 TYKDLDENIPILIDDL-LLEIRRKTLETEETYLGFSTLVDTAKQIPMGESTGIDIPGQCW 179 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDD-EQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 F + V+ E S D + Y T L G Sbjct: 180 TRFHQEKSKLKTVINPDFEMGMSYGADPIKGTFHYFTGALYPMPQEISEPYVIQSLPPGN 239 Query: 224 YVMFTYEGLG------TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 Y++ E G+ + + T +P +L IE + + + Sbjct: 240 YIVCRIEAENFETLVCEGLDKAASYLLNTWLPSRSLE------IEPF--SAEKYNLAETE 291 Query: 278 NLRCELLIPIR 288 ++ EL + ++ Sbjct: 292 DISMELWVKLK 302 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 108/299 (36%), Gaps = 44/299 (14%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D ++ ++ +LE + +QPL+L VAAKA S +H R+FK VT + Y+R RL + Sbjct: 4 DYLQRLKPVIRYLEQNFNQPLNLPEVAAKANISPYHFHRIFKAVTNETLAEYLRRLRLER 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-------- 113 A L I ++AL+ F S Q+ +AFK++F TP+ R Sbjct: 64 IATDLFYKQVSITELALENGFSSSQSLAKAFKQRFGLTPSELRECESNEKLCQLMRNSKI 123 Query: 114 ---IRPPLRLGEFTMPEH------KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFW 164 +R + P H + VT+E T + ++ + + +++ + + Sbjct: 124 GHTLRNIGNANQSETPYHGDIDQQRRVTMETTTI----EAGTLAYIRVTGPYGQGYEEAM 179 Query: 165 HDFL---GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQD-QADGYVLTGHPVMLQ 220 G + P D++ + D QA G V + Sbjct: 180 KHLCTWAGAKGFSCENAIFIYHDNPEITPDEKCRTDICFRVPADTQASGRVELQ---VFP 236 Query: 221 GGEYVMFT--------YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAK 271 GG Y Y + + + ++ L + E Y+ + Sbjct: 237 GGSYAYIRQTVKQMNEYGQAWSELMKLVV--------DTGLESDERPCFELYHSFDPQT 287 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 90/295 (30%), Gaps = 19/295 (6%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 + L ++E +L LSL +A A S +H QRMF+ V G A++ RRL + Sbjct: 12 VQSVNRALDYIEVNLAGQLSLPLIAGAACVSPFHFQRMFRAVMGETPHAFVLRRRLENAL 71 Query: 64 VALRLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALY--------RRSPEWSAFGI 114 + R P+ DIAL F S F+R F++ F +P RR Sbjct: 72 GDISQGNRQPLTDIALGRGFSSLSDFSRNFRRHFGCSPRKLDLETCLAGRRRALDDTLAG 131 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 L + VTL D P V E+ S MR W G Sbjct: 132 VSGLGGSAADQAQEFSVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEH- 190 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 G +P + + + G + + G Sbjct: 191 --HQWLGYLWDQPRLASAADCRYDVAVEVTHGRHCGEIGV---FRFPPMKVAEVVIRGGL 245 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V T +P E + G L C+ IPIR Sbjct: 246 ALEMRAFGWVRDTWLPASGYLPTDLPAFEAWLGLP-YAHGAEHFELACQ--IPIR 297 >UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmaniensis RepID=B2VKB8_ERWT9 Length = 141 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/108 (53%), Positives = 77/108 (71%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 II L W++ +L + LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ +A Sbjct: 4 DIINTLTHWIDNNLGKNLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLAAE 63 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF 112 ALR + RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + Sbjct: 64 ALRQSHRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTDYRNTMRRQRL 111 >UniRef50_Q47QG5 Transcriptional regulator, AraC family n=17 Tax=Actinomycetales RepID=Q47QG5_THEFY Length = 300 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 105/295 (35%), Gaps = 17/295 (5%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 + + ++E HLDQ + +A A S++H++R+F + G + YIR RRL+ + Sbjct: 11 LDRLNQAMEYIERHLDQRIEGAELAQIAATSEYHMRRLFSALAGMPLSEYIRRRRLTVAG 70 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL--G 121 + R +LDIA++Y + S + F RAF+ P RR+ R RL Sbjct: 71 AEVLAGDRTLLDIAVRYGYGSAEAFARAFRAMHGVGPGEARRTGAPLRSQPRMSFRLVVE 130 Query: 122 EFTMPEHKFVTLEDTPLIG----VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 T ++ V + ++G V Y I +F + + P Sbjct: 131 GSTDMRYRIVEKDAFQVVGKKARVPLVYEGPNPAIVEFVRSIDPGTLQRLAELSDQEPRG 190 Query: 178 LYGLNETRPSQ--DKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGT 234 + + + E+ Y + + + G + +F EG Sbjct: 191 VVAAVANIAGERVSAPEGTELDYYHGVVTSAPA--PEDMAVLPVAAGLWAVFEVEGEAPY 248 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q V+ P G ++ R + EL +P+ R Sbjct: 249 AIQYLWRDVFTQWFPANPYQSVPGPELLR------TTMSQDGAYVEAELWVPVER 297 >UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria RepID=SOXS_ECO57 Length = 107 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 58/106 (54%), Positives = 77/106 (72%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II+DL+ W++ H+DQPL++D VA K+GYSKW+LQRMF+ VT +G YIR RRL Sbjct: 1 MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 +AV LR T RPI DIA+ + SQQTF+R F++QF +TP+ YR Sbjct: 61 LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHR 106 >UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwardsiella RepID=C5BEG3_EDWI9 Length = 122 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 48/108 (44%), Positives = 80/108 (74%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ L+ W+E +LD+ + +D++A +AGYSKW+LQR+FK+VTG+++ AY+R RRL ++ Sbjct: 7 HQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRA 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS 110 A L+ + + I++I LQY FDSQQTF+RAFK+++ +P YR+ + Sbjct: 67 AAELQRSNKKIMEIMLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGD 114 >UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY67_CLOB8 Length = 291 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 21/298 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + D + +LE HL + +SL+ +A + +SK+H R+FK V G IG Y RRL+ Sbjct: 1 MNTKNYVLDAIEYLEKHLLEGVSLEQLAKQFNFSKFHYARLFKAVLGENIGDYQMKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A++L T IL+IA+ + SQ++FTR FK F TP YR + + + Sbjct: 61 IAAMSLLETRDSILNIAIMCGYSSQESFTRMFKAYFGITPKDYRDNEIEYLNLYKYSITQ 120 Query: 121 GEF-------TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 + T E++ + + G+ ++ ++ + L Sbjct: 121 EDIERVMSYGTATEYEIIHKNSFEITGLLYHGDNKKHDVARIFNQTAQKVQ---LDKIYN 177 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTT----ALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 +YGL+ + + + E + D+ D ++ + +Y +++ Sbjct: 178 QIDGVYGLDFCKNEEVRSYEFDFIAGIDSRYFSQIDRKDAQLVH---KYIPENDYAVYSL 234 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +Q I + + + E Y N+ L IPI Sbjct: 235 TNIIEKIQIQIQRNWFSLLTDELYIPCDNYAYEFY----PNGFVPNQKNIDAYLFIPI 288 >UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A4C8_9BACT Length = 309 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A +R + ++E HLD+ LD +A +AG SK+H R+F+ TG + Y R+ + Sbjct: 206 ASSLRRITDFMEAHLDEEFRLDELAREAGMSKFHFCRLFRKTTGLSPSRYFIRLRMEMAR 265 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 LR T+R ++++ L+ + S F + F+++ P+ YRR Sbjct: 266 RLLRETSRSVIEVGLEVGYSSPSHFAQVFQREAGVPPSEYRRQG 309 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 100/284 (35%), Gaps = 22/284 (7%) Query: 16 GHLDQPL-------SLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 HL + L +AA A S H R+++ + G +G RLS++ L Sbjct: 42 AHLQDSIRAGSPLPDLAALAAVAHQSPHHFHRVYRALAGETLGQTTARLRLSQAVHLLGE 101 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-----PPLRLGEF 123 R I D+AL + + Q RAF+ +P+ R++P A ++ Sbjct: 102 PGRSITDVALAVGYQTPQALARAFRALLQVSPSSLRQAPAIRAQTLQQLATPALAPHAAP 161 Query: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 + LE ++ + Q + F + + + + V + Sbjct: 162 APLQVTVQWLEPLEVVVLRQRGAFDDLD-RGFGRIAAWAERAGVIEHLHALIGVPLSDHR 220 Query: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 P+Q E + + TA+A H +L G + + + G G+++ + + Sbjct: 221 DVPAQQHLFECGIAFATAVAP------PAPLHVRVLGEGAHAVLRHTGSYAGLEDALDRL 274 Query: 244 YGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P R +Y D +LR ++ +P+ Sbjct: 275 LADWLPGSGHALRDAP---LHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_A4QAY1 Putative uncharacterized protein n=1 Tax=Corynebacterium glutamicum R RepID=A4QAY1_CORGB Length = 282 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 20/290 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ +E L + +D +A +A +++HL++MF + G ++ YIR RRL+ +A L Sbjct: 4 LNRIIQEIEDDL--EVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADL 61 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE--WSAFGIRPPLRLGEFT 124 + +LD+A++Y + S + F RAF++ A P+ R S +R + + T Sbjct: 62 KAGQA-VLDVAVKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVT 120 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLE----QISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 ++ + + L G + I DF + + L P Sbjct: 121 DLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKEAKARLLSLNDIEPKGALS 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEF 239 ++ + + + Y A+A V + + G +VMF EG +Q+ Sbjct: 181 IS-DEIENQQAEGSTLDYWHAVATSNP---VEEFESMEVPAGTWVMFESEGAFPESIQQM 236 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 P + + G + +ED +L +PI R Sbjct: 237 WADAATEWFPANSYSWAPGPQLLHTEYSEDFSTASA------QLWLPITR 280 >UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Clostridium RepID=A6M0I1_CLOB8 Length = 127 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 66/107 (61%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E +L++ + L +A KA SK+H R+F V G + YIR +RL Sbjct: 1 MNYEACIKKSIEYIENNLNKKIQLKELADKAFLSKYHFHRVFHSVVGEPVAEYIRKKRLE 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 ++A L T I+DIAL+Y+F +Q++FT+AFKK + P +R++ Sbjct: 61 EAANELLTTENKIIDIALKYQFSNQESFTKAFKKLYGIPPKEFRKNK 107 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 117/297 (39%), Gaps = 16/297 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E +++ +++D A A S + RMF +TG+++ YIR RR+S Sbjct: 1 MNYYERIQKSIDYIESNVENKINIDFAAQTAFMSLSNFYRMFFALTGYSVKEYIRLRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ ++ T ++DIA+++ F+S +F+RAFK+ P+ YR+ F + Sbjct: 61 LAAIDIQGTDTCLIDIAIKFDFESGDSFSRAFKRITGFLPSDYRKKKSLYKFERIDIMEK 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLG-NAPTIP 175 + D ++ + Y C + + W + G N Sbjct: 121 YFDIQDKELIENYPDIKVLKEMEPTRVAYFCYYGKQPEHHAFTVMAQWLNKNGLNVNEQN 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE----G 231 ++G N P+ ++E +A + L V L GG Y + G Sbjct: 181 LRIFGYNNPSPASPDEEEYGYEVCATVADNIVVNDDLVKEKV-LGGGLYAVTNVRRGQDG 239 Query: 232 LGTG-VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G + + + + Q +E + +D I+L +PI Sbjct: 240 DIGGEIIKAWSR-FNNWLSDSKYVYGGHQWLEEHLGFDDNANHIGGIDL----YMPI 291 >UniRef50_A4WA37 Transcriptional regulator, AraC family n=3 Tax=Enterobacteriaceae RepID=A4WA37_ENT38 Length = 120 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 49/106 (46%), Positives = 74/106 (69%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + DLL W++ +LD L +++VA ++GYSKWHLQR+FK+ TG+ + YIRA++L Sbjct: 1 MNTGAFMHDLLDWIDNNLDSRLDIESVARRSGYSKWHLQRLFKEHTGYPLAGYIRAQKLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 KS L + PIL++A+ FDSQQ+F R+FK+ + Q P +RRS Sbjct: 61 KSVERLTHSDEPILNVAIALGFDSQQSFNRSFKRLYGQAPGAWRRS 106 >UniRef50_P28816 Transposon Tn10 tetD protein n=29 Tax=root RepID=TETD_ECOLX Length = 138 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 63/113 (55%), Positives = 85/113 (75%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I+D+L+W+E +LDQ L LD+VA KAGY+KW+ QR+FK VTG + +YIRARRL+K+ Sbjct: 26 HTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKA 85 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR 115 AV LRLT + IL+IAL+Y+FDSQQ+FTR FK F TP+ YRR+ W + Sbjct: 86 AVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAMH 138 >UniRef50_A8GD44 Transcriptional regulator, AraC family n=9 Tax=Enterobacteriaceae RepID=A8GD44_SERP5 Length = 118 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 51/105 (48%), Positives = 74/105 (70%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ G I DL+ W++ +L++ L ++ VA +AGYSKWHLQRMFK TG+A+G YIR ++L Sbjct: 1 MNSTGFITDLIEWIDNNLEEKLDINTVAGRAGYSKWHLQRMFKRQTGYALGEYIRMQKLR 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 SA L + PI+ +A+ FDSQQ+F R+FK+ + QTP +RR Sbjct: 61 VSAERLANSGEPIVSVAISLGFDSQQSFNRSFKRHYGQTPGDWRR 105 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 54/98 (55%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 ++ +L +++ HLD + L ++A S +H R+FK TG + Y+ +R+ + L Sbjct: 184 LQQVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIEHAKQLL 243 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 + T R I+DIA + F+S ++ F++ TP +YR Sbjct: 244 KQTDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 93/290 (32%), Gaps = 16/290 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ + +LD +A A +S +H R+F + G + A+IR R+ ++ Sbjct: 71 YEARINRVIDYIVADPARDFTLDELAGAAPFSPFHFHRIFAGLVGETLHAFIRRLRMDRA 130 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 A L A + D+A+ F S Q F RAF+++F TP+ YRR + G Sbjct: 131 ANMLAFAPALSVTDVAMDCGFSSSQNFARAFRERFDMTPSEYRRRRHYLT---------G 181 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 H + G ++ + + D A P YG Sbjct: 182 ADREGAHCLLADPFRAHAGNGKARNAAPGDPGYESSMGDGVAGRDGTACALAHPSEPYGS 241 Query: 182 NETRPSQDKDDEQEVFYT----TALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + + L D V+ + G Sbjct: 242 PTLPGTASPHGDVPWLADGPPHVRLDPDSTRSDVMNVEVAERPACRVAYLRHIGPYAS-- 299 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 E I V+G M + + + D P N R + I I Sbjct: 300 ETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEVTPPENCRYDACIAI 349 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 52/181 (28%), Gaps = 16/181 (8%) Query: 116 PPLRLG-EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 P +RL + T + V + + P V L I + E W + A Sbjct: 262 PHVRLDPDSTRSDVMNVEVAERPACRVAY-----LRHIGPYASETIGPVWGRLMAWAGQR 316 Query: 175 PPVL-----YGLNETRPSQDKDDEQEVFYTTAL--AQDQADGYVLTGHPVMLQGGEYVMF 227 + +G++ P + A+ D + L GG Y + Sbjct: 317 GLMRPGVPGFGVSWDNPEVTPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEY 376 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G +Y +P E Y+ A + P ++ + + + Sbjct: 377 RSMISCNGFFRAWNDMYTQWLPASGWQCDDRPGYELYHDMLGCPA-EGPWDVG--ICVAV 433 Query: 288 R 288 R Sbjct: 434 R 434 >UniRef50_A5W8X4 Transcriptional regulator, AraC family n=13 Tax=Pseudomonas RepID=A5W8X4_PSEP1 Length = 291 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 57/99 (57%) Query: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 R L+ +LE HLDQP++L+ +A + S++H RMF+ G Y+ ARRL ++ LR Sbjct: 190 RQLVDYLEAHLDQPITLEELALRCNLSEYHFARMFRASFGLPPHQYLLARRLHRACQLLR 249 Query: 68 LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L P+ +IAL F S F+ F++ TP YR++ Sbjct: 250 LGVLPLGEIALLCGFASASHFSNRFRQALGATPGEYRKA 288 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 97/295 (32%), Gaps = 25/295 (8%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + D+L + + L +AA A +S+ H R+F + G + YI RL ++A Sbjct: 30 SRLNDVLHEIHKDISADLPAARLAAIAAFSEHHFHRVFAEYMGETVHRYIARIRLEQAAN 89 Query: 65 ALRLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 L + ++AL F S +F+RAFK Q +P +R A L++ E Sbjct: 90 QLMFDQSATVSEVALACGFKSLSSFSRAFKLQMGSSPGEWRSRSHTDAQLQTEFLQVPEI 149 Query: 124 ----------TMPEHKFVTLEDTPLIGVTQS-YSCSLEQISDFRHEMRYQFWHDFLGNAP 172 +P+ + + + Y S+ + W G Sbjct: 150 ARGYQNIANRALPQPVICEVPSRLMAYIRHHGYDRSIA-----HTWQKLDLWRFENG--- 201 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 + L + P + Y + + + + L GG + F G+ Sbjct: 202 LHTQGQFALLHSNPCLVPLKDCR--YVACVEIHKTPLQRSVINVLRLPGGIHARFHLAGV 259 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + +P L R + + D EL IPI Sbjct: 260 YGEFIPYLSRILQEWVPHSGLRVRTTP---IWVAYNKNQFTDSQHEFDLELYIPI 311 >UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUU7_DESHD Length = 129 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 43/105 (40%), Positives = 69/105 (65%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + D L ++E +LD + L+++A KA SK++ R+F VTG ++ YI RR++ Sbjct: 1 MDYRAKVYDSLDYIEENLDDRIDLEDLAQKAYLSKYYYHRLFHKVTGESVTRYITRRRMA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 K+A L T +PI+DIAL+Y++ SQ++FTRAF + + P YR+ Sbjct: 61 KAAEELVETEQPIIDIALKYQYASQESFTRAFMRIYGLAPGKYRK 105 >UniRef50_A5V467 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V467_SPHWW Length = 296 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 57/103 (55%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 + +++ + ++E H+ + +SLD +A +AG S++H R+FKD G AY+ RR+ ++ Sbjct: 193 SPVLQRVKDYVEAHIAEDISLDMLAREAGVSRFHFIRLFKDSVGMTPHAYLIERRMVRAC 252 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L T + I +IA+ F+ F F++ + P +R+ Sbjct: 253 NLLMHTKQSIGEIAVNCGFEDPSYFAARFRRLYRMCPREFRKR 295 >UniRef50_Q48413 Transcriptional activator ramA n=51 Tax=Bacteria RepID=RAMA_KLEPN Length = 113 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 51/108 (47%), Positives = 70/108 (64%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A +I ++ W++ +L QPL +D++A AGYSKWHLQR+F G ++G YIR R+L +A Sbjct: 5 AQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAA 64 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA 111 LR T + + DI L+Y FDSQQTFTR F + F Q P YR+ A Sbjct: 65 RDLRDTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYRKENHSRA 112 >UniRef50_D1NY75 Multiple antibiotic resistance protein MarA n=5 Tax=Enterobacteriaceae RepID=D1NY75_9ENTR Length = 123 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 53/107 (49%), Positives = 75/107 (70%), Gaps = 2/107 (1%) Query: 5 GIIRDLLIWLEGHL--DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ +++ WLE L ++ + +D +A K+GYSKWHLQR+FK++ G +G Y+R RRL ++ Sbjct: 4 SVVNEIIRWLESQLQRNEGIKIDTIADKSGYSKWHLQRVFKELKGCTLGEYVRKRRLLEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW 109 A +LR PILDIALQY F SQ TFTR FKK F TPA +R++ E Sbjct: 64 AKSLREGNLPILDIALQYGFSSQATFTRIFKKHFDTTPAKFRQAGEL 110 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 31/304 (10%) Query: 3 QAGIIRDLLIWLEGHLDQP------------LSLDNVAAKAGYSKWHLQRMFKDVTGHAI 50 G I +L +L + + +S+ +A A S +LQ MFK T + Sbjct: 8 YQGQIETILHYLNSMIQKNWTGKTADEFNRLISIPELAKMACMSVRNLQLMFKAYTSETL 67 Query: 51 GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS 110 YI R+ + L+ + I +I F +Q +K++ TP ++ Sbjct: 68 HQYIIRTRMEYAQQLLKDNKKSIAEIYEYIGFANQSALNNTLQKKYNLTPRELQKK---- 123 Query: 111 AFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEM-RYQFWHDFLG 169 + + P ++ V E P++ ++ Y + + S E + +++ Sbjct: 124 --LLETSHTYPSYISP-YRIVESETIPVLFLS--YIGNYDTCSTVAFETYTWDCLYEYAK 178 Query: 170 NAPTIPPV--LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHP--VMLQGGEYV 225 +P +G+ ++ + A+ + LT + L G Y Sbjct: 179 ENSLLPDKEDYWGIAYDDTDITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYA 238 Query: 226 MFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 ++ ++G + F T+ +P + + +E Y ++ L E+ I Sbjct: 239 VYVHQGDYALLDAFYETILKQ-LPQF-YSLGETPILEHYL---NSPTDTDVKELLTEVWI 293 Query: 286 PIRR 289 PI + Sbjct: 294 PIVK 297 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 53/100 (53%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 +++ H +PL+L+ VA +AG S ++ ++FK+ G Y+ R+ ++ AL Sbjct: 412 KAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALAE 471 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 T + + +I ++ F+R FKKQ +P+ YR+ + Sbjct: 472 TDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQ 511 >UniRef50_P43463 HTH-type transcriptional activator aarP n=3 Tax=Providencia RepID=AARP_PROST Length = 135 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 76/105 (72%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q+ II ++L+W+EG+L LSLD++A +GY+KWHLQR+F+ + G +G YIR RR+ ++ Sbjct: 17 QSSIISEILVWIEGNLTNRLSLDDIAQHSGYTKWHLQRVFRKIVGMPLGEYIRRRRICEA 76 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 A L+ T ++DIAL+Y+FDSQQ+F + FK +P+LYR S Sbjct: 77 AKELQTTNLQVIDIALKYQFDSQQSFAKRFKAYLGISPSLYRLSD 121 >UniRef50_Q2B3U5 Transcriptional regulator (AraC/XylS family) protein n=2 Tax=Bacillus RepID=Q2B3U5_9BACI Length = 297 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 44/103 (42%), Positives = 65/103 (63%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + II+ + +E L + LSLD++A AG+SK+H R+F+ G + YIR RR++ S Sbjct: 6 YSSIIQKSIEHIESSLHEDLSLDHIAQTAGFSKFHYHRIFQKEVGVTVSEYIRYRRIANS 65 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 A L T ILDIAL ++F+SQ+ FTR+FKK + P YR+ Sbjct: 66 AHMLLYTDEKILDIALYFQFESQEAFTRSFKKYYHLPPGKYRK 108 >UniRef50_A8GHJ0 Transcriptional regulator, AraC family n=1 Tax=Serratia proteamaculans 568 RepID=A8GHJ0_SERP5 Length = 140 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 53/120 (44%), Positives = 78/120 (65%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ I ++L W+EG+L L++ +A K+GYS++H+QR+FK G + YIR RR++ Sbjct: 3 INMKIFINEMLKWIEGNLGAELNIKTIAKKSGYSRFHIQRLFKLHAGLTLAQYIRMRRVT 62 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A+ALR T R I+DIAL Y FDSQQ FTR FKKQ TP RRS + + + L + Sbjct: 63 EAAIALRFTDRKIMDIALDYGFDSQQVFTRTFKKQLKTTPGELRRSKQLNNNRLCYSLYM 122 >UniRef50_Q180J9 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q180J9_CLOD6 Length = 160 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 72/128 (56%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I +++ ++E +L + L+LD +A A YSK+HL RMF +V G I YI+ RRL+++ Sbjct: 4 NTDVIMEIIDYIEENLTENLNLDKIAYIANYSKYHLHRMFTNVVGCTIHQYIQRRRLTEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + I+DIA+ + + Q+FT AF+ + ++P +YR E+ R L L Sbjct: 64 ARQLIFTDKYIIDIAITVGYSTHQSFTLAFRNLYKESPQVYRNKDEFYPIQQRFVLNLNH 123 Query: 123 FTMPEHKF 130 E Sbjct: 124 QIQSEKCI 131 >UniRef50_C9XKB1 AraC-family transcriptional regulator n=18 Tax=Clostridiales RepID=C9XKB1_CLODC Length = 294 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 1 MDQAGI-IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M I + + ++E HL + L LD +A YSK+HL R F G + YI+ R+L Sbjct: 9 MSYKVINVITAIDYIEEHLSEKLDLDIIANAVHYSKYHLHRTFTTSVGLTMHDYIKRRKL 68 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 +++A L + +PI++IAL ++SQQ FT FK + ++P YR+ E+ +R L+ Sbjct: 69 TEAAKLLVFSKKPIIEIALIAGYESQQAFTSIFKAMYKKSPNKYRKEQEFYPLQLRFVLK 128 Query: 120 LGEF-------TMPEHKFVTLEDTPLI 139 E K ++ D PL Sbjct: 129 KDNLFSKNVLELEKEIKLASMSDIPLW 155 >UniRef50_A6UK12 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Rhizobiaceae RepID=A6UK12_SINMW Length = 331 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 54/99 (54%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +R + +LE HL +P +L ++ G S++H R+FK TG + Y +R++++ + L Sbjct: 232 LRRAVAYLEEHLAEPFNLAKLSEAVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLL 291 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 + T I+ I + + S F + F+++ P+ YRR Sbjct: 292 QETDTSIIKIGMSVGYSSPSHFAQVFRRETGLPPSHYRR 330 >UniRef50_B1HZR5 Transcriptional regulator (AraC/XylS family) n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HZR5_LYSSC Length = 294 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 66/105 (62%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++ ++E L + + L+ + + GYSK+HL R+FK TG IG YIR RRL+ Sbjct: 1 MEYSQATQRIITYIEEQLMEEIELEFMPSITGYSKFHLSRIFKQETGLTIGEYIRMRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L + I+ IA +++F SQ+ FTRAFK+ +A P YR+ Sbjct: 61 VAASCLIYSNASIITIAFKFQFQSQEAFTRAFKEVYALPPGKYRK 105 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 120/291 (41%), Gaps = 21/291 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +I + ++ H+ + +S+++VA +SK++ RMFK+ T +I A+I+ R+ +S Sbjct: 4 KKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRMDQS 63 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF-GIRPPLRL 120 +V+L+ + I DI + Y S ++ AF KQ++ P +R++ + P + Sbjct: 64 SVSLKVEKDKTITDIGVNY-GYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPSKY 122 Query: 121 GEFTMPEH---KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 F EH K + + + Y + I D + + + ++ + Sbjct: 123 NTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDNWYSF-MERYKTYIKPDTLLIEK 181 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 Y PS + ++ + +D V + ++GG++ ++ + G + Sbjct: 182 SY----DDPSITELEKCIYDLCITVGED-----VELENVTTIKGGKFAVYRFNGYIHDIF 232 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V+ +P + + Y+ + ++ +L I I+ Sbjct: 233 VTFQGVFNIWLPRSGYKMDERYGLGIYHNI-----DRKNNHVTMDLCIAIK 278 >UniRef50_A8I184 Transcriptional regulator n=3 Tax=Rhizobiales RepID=A8I184_AZOC5 Length = 310 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 51/100 (51%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 +R ++ ++ +L +SL +++ A S H R F+ G +I + RL ++ L Sbjct: 208 MRRVIDYINDNLASEISLSDLSDIACLSHHHFARAFRSAVGVPPHRFISSLRLQRAQEML 267 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 T + +IA RF SQ TFTRAF++ +P YRR Sbjct: 268 AHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMSPGEYRRK 307 >UniRef50_C0D9U5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9U5_9CLOT Length = 142 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 1 MD-QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M+ Q I+R ++ ++E +L+ L L+ +AA AGYS++HL R+F TG I Y++ARRL Sbjct: 1 MNTQRDIVRQVITYIESNLEGDLDLEKIAASAGYSRFHLNRIFAGETGCTIYKYLQARRL 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 + +A L T PI IA + + SQQ F+ AFK+ + +P +YR + R L Sbjct: 61 TSAAEKLAKTHTPIAQIACESGYSSQQAFSLAFKRAYLCSPKVYRDRGIFIPRQNRLSL 119 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobac... 316 5e-85 UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular or... 305 8e-82 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 292 8e-78 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 289 9e-77 UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonu... 281 2e-74 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 275 2e-72 UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobact... 273 5e-72 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 270 5e-71 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 269 8e-71 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 269 9e-71 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 268 1e-70 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 268 2e-70 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 267 3e-70 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 267 3e-70 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 264 2e-69 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 264 3e-69 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 262 9e-69 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 262 1e-68 UniRef50_P96662 Uncharacterized HTH-type transcriptional regulat... 261 2e-68 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 261 3e-68 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 260 6e-68 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 259 7e-68 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 259 8e-68 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 258 1e-67 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 258 1e-67 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 258 2e-67 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 256 8e-67 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 255 9e-67 UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterob... 255 9e-67 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 253 3e-66 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 253 4e-66 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 253 5e-66 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 252 9e-66 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 252 1e-65 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 252 1e-65 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 252 1e-65 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 252 1e-65 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 252 2e-65 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 251 2e-65 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 250 3e-65 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 250 3e-65 UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=... 250 3e-65 UniRef50_A6M032 Transcription activator, effector binding n=19 T... 250 3e-65 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 250 5e-65 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 250 6e-65 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 249 1e-64 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 249 1e-64 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 248 1e-64 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 248 1e-64 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 248 1e-64 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 248 1e-64 UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=C... 248 1e-64 UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ... 248 2e-64 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 247 3e-64 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 247 3e-64 UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Pr... 247 4e-64 UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C... 247 4e-64 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 247 4e-64 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 246 6e-64 UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia... 246 6e-64 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 246 8e-64 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 246 8e-64 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 246 9e-64 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 245 1e-63 UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=B... 244 2e-63 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 244 2e-63 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 244 2e-63 UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. ... 244 3e-63 UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=C... 243 4e-63 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 243 4e-63 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 243 6e-63 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 243 6e-63 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 243 8e-63 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 242 9e-63 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 242 1e-62 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 242 1e-62 UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr... 242 1e-62 UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=C... 241 2e-62 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 241 2e-62 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 241 2e-62 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 240 5e-62 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 240 5e-62 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 240 6e-62 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 239 7e-62 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 239 7e-62 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 239 9e-62 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 238 2e-61 UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=S... 238 2e-61 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 237 3e-61 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 237 3e-61 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 237 4e-61 UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri... 237 4e-61 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 237 4e-61 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 237 4e-61 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 236 7e-61 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 236 8e-61 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 236 9e-61 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 235 1e-60 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 235 2e-60 UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mir... 234 3e-60 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 234 3e-60 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 233 4e-60 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 233 7e-60 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 231 2e-59 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 231 2e-59 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 231 2e-59 UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Cl... 231 3e-59 UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID... 230 3e-59 UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=C... 230 4e-59 UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio ... 230 4e-59 UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC ... 229 1e-58 UniRef50_B8I0Z7 Transcriptional regulator, AraC family n=3 Tax=C... 228 2e-58 UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B... 227 3e-58 UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Ba... 227 5e-58 UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=S... 226 6e-58 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 226 7e-58 UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=C... 225 1e-57 UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=A... 224 2e-57 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 224 2e-57 UniRef50_A4BA46 Transcriptional regulator, AraC family protein n... 224 3e-57 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 224 4e-57 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 223 5e-57 UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 T... 223 5e-57 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 223 5e-57 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 223 8e-57 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 222 1e-56 UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Er... 221 2e-56 UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=F... 221 2e-56 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 221 2e-56 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 221 2e-56 UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reineke... 220 4e-56 UniRef50_B8FSS1 Transcriptional regulator, AraC family n=6 Tax=C... 220 5e-56 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 220 5e-56 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 220 7e-56 UniRef50_A6LX85 Transcription activator, effector binding n=2 Ta... 219 9e-56 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 218 1e-55 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 218 2e-55 UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salm... 218 2e-55 UniRef50_A9KJ61 Transcriptional regulator, AraC family n=2 Tax=F... 218 2e-55 UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp... 217 4e-55 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 216 6e-55 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 216 6e-55 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 216 7e-55 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 216 8e-55 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 215 1e-54 UniRef50_C6CRD1 Transcriptional regulator, AraC family n=2 Tax=F... 215 2e-54 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 213 4e-54 UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r... 213 4e-54 UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicu... 213 5e-54 UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=... 213 6e-54 UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=C... 213 7e-54 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 212 1e-53 UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=D... 212 1e-53 UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevi... 212 1e-53 UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=C... 212 1e-53 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 211 2e-53 UniRef50_C5EKR4 AraC-family transcriptional regulator n=2 Tax=Cl... 211 3e-53 UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collins... 210 5e-53 UniRef50_D1B3I6 Transcription activator effector binding protein... 209 9e-53 UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A... 209 9e-53 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 208 1e-52 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 208 2e-52 UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=S... 206 7e-52 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 205 1e-51 UniRef50_C4L2T4 Transcriptional regulator, AraC family n=25 Tax=... 205 1e-51 UniRef50_B0MC81 Putative uncharacterized protein n=2 Tax=Clostri... 205 2e-51 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 203 5e-51 UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-bindin... 203 8e-51 UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=P... 202 1e-50 UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=... 201 2e-50 UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=So... 201 2e-50 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 201 2e-50 UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=B... 200 4e-50 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 200 4e-50 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 200 6e-50 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 196 8e-49 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 196 9e-49 UniRef50_Q47QG5 Transcriptional regulator, AraC family n=17 Tax=... 196 1e-48 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 195 1e-48 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 195 2e-48 UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmone... 195 2e-48 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 194 2e-48 UniRef50_A6M0H0 Transcription activator, effector binding n=2 Ta... 194 4e-48 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 193 7e-48 UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salm... 192 1e-47 UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=... 191 2e-47 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 189 9e-47 UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2... 189 1e-46 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 189 1e-46 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 188 1e-46 UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Ba... 188 2e-46 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 188 2e-46 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 188 2e-46 UniRef50_A4QAY1 Putative uncharacterized protein n=1 Tax=Coryneb... 188 2e-46 UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=C... 187 4e-46 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 187 5e-46 UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escheri... 187 5e-46 UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n... 186 5e-46 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 186 8e-46 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 185 2e-45 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 182 1e-44 UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostri... 182 1e-44 UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coproco... 181 2e-44 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 181 3e-44 UniRef50_D2NAV2 Transcriptional regulator n=1 Tax=Staphylococcus... 180 5e-44 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 180 7e-44 UniRef50_UPI0001789679 transcriptional regulator, AraC family n=... 178 2e-43 UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=B... 175 1e-42 UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Fi... 174 2e-42 UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=... 174 3e-42 UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX 173 5e-42 UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_E... 173 9e-42 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 173 9e-42 UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lacto... 172 1e-41 UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Cl... 172 1e-41 UniRef50_B9Y4X5 Putative uncharacterized protein n=5 Tax=Firmicu... 169 7e-41 UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC... 169 8e-41 UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=K... 169 1e-40 UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA... 169 1e-40 UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escheri... 168 1e-40 UniRef50_Q24QP2 Putative uncharacterized protein n=1 Tax=Desulfi... 164 2e-39 UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersini... 164 3e-39 UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=C... 163 1e-38 UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H... 161 2e-38 UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=E... 158 2e-37 UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=... 158 2e-37 UniRef50_A8FAK8 Possible AraC family transcriptional regulator n... 157 5e-37 UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC... 156 8e-37 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 156 1e-36 UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostri... 155 1e-36 UniRef50_D1AJR4 Transcriptional regulator, AraC family n=1 Tax=S... 155 1e-36 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 154 3e-36 UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATC... 153 8e-36 UniRef50_C0BW87 Putative uncharacterized protein n=2 Tax=Clostri... 152 1e-35 UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=C... 152 2e-35 UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC ... 151 2e-35 UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=D... 151 4e-35 UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwa... 150 5e-35 UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmanie... 150 6e-35 UniRef50_B9E6P5 Putative uncharacterized protein n=1 Tax=Macroco... 150 6e-35 UniRef50_A8I184 Transcriptional regulator n=3 Tax=Rhizobiales Re... 149 9e-35 UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Entero... 149 1e-34 UniRef50_A5V467 Transcriptional regulator, AraC family n=1 Tax=S... 149 1e-34 UniRef50_A6TN59 Helix-turn-helix-domain containing protein, AraC... 149 1e-34 UniRef50_A9KJQ6 Transcriptional regulator, AraC family n=2 Tax=C... 149 1e-34 UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escheri... 148 2e-34 UniRef50_B4WTP1 Transcriptional regulator, AraC family protein n... 148 2e-34 UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria ... 148 2e-34 Sequences not found previously or not previously below threshold: UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 173 8e-42 UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=H... 155 1e-36 >UniRef50_P0ACI1 Right origin-binding protein n=101 Tax=Enterobacteriaceae RepID=ROB_ECO57 Length = 289 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR Sbjct: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 >UniRef50_C4X304 Right origin-binding protein n=9 Tax=cellular organisms RepID=C4X304_KLEPN Length = 289 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 235/289 (81%), Positives = 264/289 (91%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGIIRDLL WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS Sbjct: 1 MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQF+ TPALYRRSP+WS+FG+RPPLRL Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 GEFT+P+H+F+TL T L+GVTQSY+C LE+ISDFR++MR QFW DFLGN+P+IPPVLYG Sbjct: 121 GEFTLPKHEFITLPPTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+E RPS +KDDEQEVFYTTAL + A+G++ HPV L+GGEYVMFTYEGLGTG+QEFI Sbjct: 181 LHEPRPSLEKDDEQEVFYTTALTPEMANGHLQHAHPVTLEGGEYVMFTYEGLGTGLQEFI 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 LTVYGTCMPML+LTRRKG DIER+YP ++++ PI LRCE LIPIRR Sbjct: 241 LTVYGTCMPMLHLTRRKGLDIERFYPEDESRDQATPIQLRCEYLIPIRR 289 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 118/285 (41%), Gaps = 8/285 (2%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +LI ++ +LD+PL+++ +A A S +H R+F G + Y+R RL ++ Sbjct: 17 YQERLNRVLIHIQKNLDEPLTIERLAEVACLSPFHFHRIFSAHVGETVTGYVRRLRLERA 76 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A + T + D AL +++ FTRAF+++F +P+ +R + E Sbjct: 77 ATRIAFTGESVTDTALGVGYETPAAFTRAFRERFGMSPSEFRGQQRETILSFAENSTAKE 136 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + T ++ V ++ + + + M + + + + T ++ G+ Sbjct: 137 IIVMKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLM----TGETLMVGIG 192 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P+ +++ + D + GG Y +F ++G TG+ E Sbjct: 193 HDDPAITAEEKIRYDACVTFSGDV--KPEGEVGIQTIAGGRYAVFLHKGAYTGLPEIYRN 250 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + T R E Y +P NLR E+ +P+ Sbjct: 251 IFAGWLATSGCTLRDQPCFEVYLNR--DPRRTKPENLRTEIWVPV 293 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 117/293 (39%), Gaps = 17/293 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++++ HLD P++L+ +A A +S +H R+F +TG + YIR L ++ Sbjct: 8 YEERIIRVQMFIQDHLDDPMTLEELAKVACFSPFHFHRIFTAMTGEPLKEYIRRLLLERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-------RSPEWSAFGIR 115 A LR +++P++ +AL + + + FTRAF+ F P YR R+ S Sbjct: 68 AHELRYSSQPVVQVALNAGYQTHEAFTRAFRNMFGVPPRQYRTELPSRARNKAGSPQVFN 127 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + + + + ++ + ++ E+ ++ H + Sbjct: 128 LRILKPKGDAMDIRIEEFPPLDVVFI--RHTGPYEECGIAWEKLCS---HPDVAKELGPE 182 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ P + D+ + + ++GGEY + T+ G G Sbjct: 183 TQAIGICYDDPDITEADKIRMDVCVTAPPSLS--PPEGMEKQTIKGGEYAVLTHHGPYEG 240 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + ++G +P +E Y ++ P +L E+ +P++ Sbjct: 241 LHDCYRWLFGEWLPSSGREANYAPSLEVYV---NSPEEVAPQDLITEIRVPLK 290 >UniRef50_D2TW49 Right origin-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TW49_9ENTR Length = 305 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 158/296 (53%), Positives = 198/296 (66%), Gaps = 7/296 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL W++ HLDQPL LDNVAAKAGYSKWHLQRMFK++T AIG+YIRARRLS Sbjct: 1 MDQNNIIRDLLYWIDTHLDQPLFLDNVAAKAGYSKWHLQRMFKNITQQAIGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF TPALYRRS +W A G++PP+ L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFGITPALYRRSEDWCATGMQPPITL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E +P FVTL L+G+ Q+ S LE+ S EMR FW + A IP +YG Sbjct: 121 EEQKLPNVSFVTLTPKHLMGIEQTCSYILEEWSTACAEMRKHFWQYYQDKAKNIPNEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG--TGVQE 238 L+ S +KD+EQ V Y TA+ AD H ++++GG+Y FT+EG + +Q+ Sbjct: 181 LHRVVHSSEKDEEQTVLYITAVEPQYADNKNNLYHSIIIEGGDYARFTFEGKPTKSDLQQ 240 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKA-----GDRPINLRCELLIPIRR 289 F+ +YG MP LNLTRR G DIE Y+ + + + +PI+R Sbjct: 241 FLYMIYGVYMPNLNLTRRAGHDIEHYHLKDPNNPECNYDNPENHMVAFDYFVPIKR 296 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 118/287 (41%), Gaps = 12/287 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D A + +L ++ HLD P+ L ++A A +S +H R+F + G ++ ++IR RL + Sbjct: 11 DHAERMDRVLEHIQAHLDDPMQLLDLADIACFSPYHFHRIFSGMIGESVKSHIRRLRLER 70 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A+ L+L P+ DIA Q F++ ++FTRAF F +P +R++ + Sbjct: 71 AAITLKLGEAPVTDIAFQAGFETHESFTRAFNAMFGLSPQRFRQAHHGTLD--HKHCNYW 128 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + + E V LE+ ++ V ++ + + + W G + L Sbjct: 129 KEIVMEASVVNLEEMNVVFV--RHTGPYKDCNHAWSTLCG--WAGPRGLVNA-DARILAL 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P +D+ +A + + GG Y ++G + + + Sbjct: 184 CHDDPDVTPEDKIRYDACITVAGQTEVQAPIGM--KTIAGGRYAKTLHKGPYSDLHKTYA 241 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + G P G IE Y D P LR E+ +P++ Sbjct: 242 QLCGQWAPQNGCEADAGASIEIYLNTPDK---TAPEELRTEVYVPLK 285 >UniRef50_B4EY53 Right origin-binding protein n=55 Tax=Enterobacteriaceae RepID=B4EY53_PROMH Length = 300 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 164/297 (55%), Positives = 209/297 (70%), Gaps = 8/297 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQ IIRDLL WL+ +LDQPLSLDNVA KAGYSKWHLQRMFK+VTG AIG+YIR+RRLS Sbjct: 1 MDQTNIIRDLLAWLDNNLDQPLSLDNVATKAGYSKWHLQRMFKEVTGQAIGSYIRSRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++AVALRLT+RPILDIALQYRFDSQQTFTRAFKKQF +TPALYRRS EW A GI PP++L Sbjct: 61 RAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFDRTPALYRRSDEWCAVGICPPIKL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ ++V L + LIG+ Q+ S +LEQ ++ +MR FW +++ TIP +YG Sbjct: 121 DPQPLPKWEYVQLPEIKLIGIEQTCSHTLEQWANACSDMRQTFWQNYITKVNTIPHEVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTYEGLGT--GVQ 237 L+ T+ S + +DEQ V YTTA+ A T + V+L+ G+Y+ F +EG +Q Sbjct: 181 LHHTQHSDEHEDEQRVIYTTAVEPAYASFVEDDTAYEVILEAGDYIRFDFEGEAKRGAMQ 240 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAE---DAKAGDRPINLR--CELLIPIRR 289 EF+ +YG C+P + LTRRKG DIE+YY E D P + E IPI+R Sbjct: 241 EFLFLIYGVCLPTMGLTRRKGHDIEKYYLKEVHYDNVMTAEPQDHIKRFEYYIPIKR 297 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 13/288 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L + HLD+PL +D +A A S +H R+++ + G + +R RL ++ Sbjct: 36 YETRLGRVLDHIYDHLDEPLDIDRLAEIACLSPYHWHRIYQAMYGETVATTVRRLRLHRA 95 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L + PI++IA + + S Q+F+R F+ F PA YR+ S F RP L + Sbjct: 96 AGYLANGSMPIVEIAERSGYSSLQSFSRTFRAVFGVPPAQYRKQGTHSRF--RPALSGDD 153 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + V P+ ++ + QI F + H+ L + G+ Sbjct: 154 QMTMR-EVVIRHVEPIEVLSVDHVGPYMQIGKAFDALFGWLAKHNLLAGQ----MRMVGV 208 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYV--LTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 P + E L ++GGEY + + G + ++ Sbjct: 209 YYDDPGVVAESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAA 268 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +YGT + E Y ++ P +L E+ +P+ Sbjct: 269 YEWLYGTWLVQSGREAADAPVFEEYL---NSPKDTAPADLVTEICLPL 313 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 109/286 (38%), Gaps = 10/286 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + + ++ HLD+ LSL+++AA A YS H R+F+ + G + Y+R R+ ++ Sbjct: 8 YEAKILRVQLLIQHHLDEDLSLEHLAAAADYSPCHFHRIFRGIVGESADDYVRRLRMERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A +LR R +LDIAL + S + FTRAF + F TP+ Y+ A + Sbjct: 68 AQSLRYRRRSVLDIALDAGYGSHEAFTRAFVRTFGVTPSDYQSLEHPPASIKETLMSTVN 127 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQI-SDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 +T + T L + E + F +++ ++ + T G+ Sbjct: 128 YTAAHVRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLM----TDCTACVGV 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P ++Q + D + G+ + ++G + E Sbjct: 184 YHDDPDVTAPEKQRAD--VGVTVDDQFQPTGEIQVQTIPSGKCAVLRHQGHYDTLHEAYR 241 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +P E Y + + P ++ +P+ Sbjct: 242 WFFSVWLPDSGHEPGDFPAYEIYV---NDASQLPPDQWLTDICVPL 284 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 116/288 (40%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + ++ HL+ LS++ ++ A +SK+H R F TG +G ++ +RL ++ Sbjct: 9 YINRMNRVCDYILAHLNDDLSVEKLSEVACFSKFHFHRQFSTYTGMTVGKFVLMQRLKQA 68 Query: 63 AVALRLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR-L 120 + L ++DIAL+ F+S + F+RAFK F QTP+ +R+SP W + + L + Sbjct: 69 SKQLAFNQPMRVIDIALEAHFESPEAFSRAFKNTFGQTPSQFRQSPNWHTWRAQYALPII 128 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + V + T + + E+I D + ++ W +P +G Sbjct: 129 ERNIVMNIDLVEFDHTLIAVLEHR--GPAEKIEDSLN--IFRKWRKTTPYSPVANHKSFG 184 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L P + + + + D + + G + +EG + + + Sbjct: 185 LVYDDPDTVEPAKFRFDLCAEVKETIPDNAQGLINKA-IPAGRCAVLRHEGSLNTIGDKV 243 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P R Y + +L ++ +P++ Sbjct: 244 RHLYCNWLPNSGEELRDFPCFFHY---TNLNGDTPESDLVTDIYLPLQ 288 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 119/286 (41%), Gaps = 12/286 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L ++ +LD LSLD +A A S++H R+F+ + G + IR RL+++ Sbjct: 10 YEKRMLRVLEYIYNNLDGDLSLDALADVACMSRFHWHRVFQSMRGETLATSIRRIRLNRA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L + +PI +IA QY + S Q+F+RAFK ++ P +R S + + Sbjct: 70 ALDLIQSKQPITEIAEQYGYPSAQSFSRAFKGEYGMAPGQFRESKYAAPTLETEKESI-- 127 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 F+M + + + L + S ++ ++ + G+ Sbjct: 128 FSMHPVEIKEVPERSLQALFHR--GSYFEMGVVFSKLAAMLSSR---GVIRKCGPIVGIY 182 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 PS DE + Q+ A+ P+++ GG + ++G G++ Sbjct: 183 YDDPSLVPLDELRSHVGAVVPQNFAN--TEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHY 240 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG +P E + ++ P +L E+ +P++ Sbjct: 241 LYGVWLPTSGEEAADQPCYEVFL---NSPTNTAPEDLLVEIFLPLQ 283 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 110/307 (35%), Gaps = 28/307 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + +++ HL L+LD +A + +SK+H R+F VTG AYI +RL++ Sbjct: 3 DYQERVDQVCKYIDAHLHHKLNLDQLAELSHFSKYHFSRIFASVTGETPFAYITKQRLAR 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA---------- 111 +A LR T + +L+IAL F+S +F AFKK F +TP R Sbjct: 63 AAAYLRETNQSVLEIALGCGFESASSFNAAFKKHFGRTPTEMREQARQDRNISQADRNRQ 122 Query: 112 ---FGIRPPLR------LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ 162 P + L + V L V S LE + + Sbjct: 123 EAGAAPNPYHQTVKNNLLRRVWQMQATIVELPLMEAAYVRHVGSY-LETYQAWAKLGMWA 181 Query: 163 FWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQA-DGYVLTGHPVMLQG 221 H G++ P+ +++E + + L G Sbjct: 182 AQHQLF----PPEQSFIGISLDDPAVTEEEECRYDACVTVPDTLSRADAPPEIGFQTLPG 237 Query: 222 GEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC 281 G Y F + + +++G +P +E + + A D + Sbjct: 238 GLYAKFNFYDTPDKLALLYQSIFGNWLPDSEYDPDDRYCLEF---SMNDPAQDPQGKAKV 294 Query: 282 ELLIPIR 288 +L IPI+ Sbjct: 295 DLYIPIK 301 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 116/287 (40%), Gaps = 10/287 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 G + + ++ HLD+PLSL+ ++A A S +H R F TG + YI+ RL ++ Sbjct: 10 YVGRFQRVCRYIARHLDEPLSLEALSAIAHSSPYHFHRQFSAYTGIPLYRYIQWLRLRRA 69 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLRL 120 L ++DIAL F + ++F+RAF+ F Q+P +R+ P+W+ + R P L Sbjct: 70 CWRLAFNPRDKVIDIALDAGFQNAESFSRAFRTAFDQSPTQFRQQPDWAEWHRRVPKHTL 129 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E T + ++ T + + S L + R+ W G +P +G Sbjct: 130 QEQTSMDVNIISFPTTRIAVLQHRGSPDLVNTTA----ARFIAWRKTSGLSPVATSDTWG 185 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P + +A + + + GG + + G + + Sbjct: 186 IAWDDPQTTPQEAFRFDICGTVAGPVGENAFGVIN-GEIPGGRCAVVRHHGSLDTLANSV 244 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P T R D Y+ + L+ ++ +P+ Sbjct: 245 WFLYRDWLPASGETLR---DFPVYFRYLNFVHEVAEHELQTDIYLPL 288 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 110/321 (34%), Gaps = 43/321 (13%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + A I +L +++ HLDQPL ++A A +S++H R+F G +G+Y + RRL K Sbjct: 13 EYARRINRVLNYIDAHLDQPLDGAHLADIANFSRFHFHRIFAAWMGETLGSYAQRRRLEK 72 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-----RSPEWSAFGIR 115 +A L + +L+ AL F S + F RAFK +F TP+ +R R +A + Sbjct: 73 AAFRLSCGSKETVLETALATGFQSGEAFARAFKLKFGCTPSAWRSTTLERMKTQAAAIGQ 132 Query: 116 PP----------------------------LRLGEFTMPEHKFVTLEDTPLIGVTQSYSC 147 PP L E + + + L + Sbjct: 133 PPGSQQSNPDQVFGNLHQEDLRAFGEPQGSCHLKEEIAMDVRIIDLPKAHVAYQRLIGPY 192 Query: 148 SLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQA 207 I F W G + YG+ PS + + Sbjct: 193 G-PAIGQFWRGTI-APWMHSNGLSDQTC---YGIGYDDPSLTPASKCRYDACVEVPAHFV 247 Query: 208 DGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPA 267 L GG Y + ++G G+ + + MP + E + A Sbjct: 248 AS--GQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMPSSGMQCDDRPCFEMFSAA 305 Query: 268 EDAKAGDRPINLRCELLIPIR 288 C++ IP+R Sbjct: 306 T--AMDADTGEFCCDICIPVR 324 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 31/306 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L ++E +L + ++L+ +A A +S +H R+F+ + G ++ YIR RRL+ Sbjct: 1 MDYVVCIQRTLDYIEENLQEQMTLEQLAKIACFSPFHYHRVFQAIVGESVMDYIRKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS-----AFGIR 115 +A L T ++ IA++ F Q++F RAFKK + +P YR + S + Sbjct: 61 CAAERLFYTDEKVITIAIEVGFQYQESFNRAFKKIYGVSPRQYRNAKRISGPLRGKACLD 120 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN----- 170 L LG E KFVT +IG Y + ++ +FW +L N Sbjct: 121 KKLWLGGHK-MEPKFVTKPAFHIIG----YELKTKNADGQNNKDIPEFWQHYLKNKLGCT 175 Query: 171 --APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 P V G+ ++ + E Y + ++ EY +FT Sbjct: 176 IPNPLHKHVELGIC----TEFNPETGEFVYVIGMEVEKGTKAPEGMVYKSFPELEYAVFT 231 Query: 229 Y-----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 E + +Q ++ P + + E Y N+ ++ Sbjct: 232 TPKANEESFTSSIQSTWNYIFTEWFPQSDYEHNGVVEFELYDERC-----HGTENIEMDI 286 Query: 284 LIPIRR 289 IP+++ Sbjct: 287 YIPVKK 292 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 125/296 (42%), Gaps = 17/296 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++E HL + ++++ +A + S +H QR F +T +I Y+R RRL+ Sbjct: 1 MSWIESIQKAINFMEDHLLENITIEQIAQEVNSSVFHFQRTFAILTDMSIADYLRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L T + I+D+A +Y +++ + FT+AF+KQ TP+ R+ R ++ Sbjct: 61 LAAQELMDTDQKIIDLAYKYGYETPEAFTKAFRKQHYVTPSEARKRQGPLKSYNRLVIQV 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQ-FWHDFLGNAPT 173 L ++K V + ++GV ++Y+C + +I F E+ F H Sbjct: 121 SLKGAEPMKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNG 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 + G+ P+ ++ + + Y A + + + ++V+F G Sbjct: 181 NINGVLGVCV--PNTNQGQQGFIDYWIA--TNHVGDVGEDLLTMEVPASKWVVFEVHGPM 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q +Y P ++E Y + E+ IPI+ Sbjct: 237 PDAMQNTWKQIYSEWFPSNPYEPAGTAELEVYPE-----EDAYSPDSYSEIWIPIK 287 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 262 bits (670), Expect = 9e-69, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 125/300 (41%), Gaps = 22/300 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ H+ +PLSLD++A ++ +S+W LQR+F+ TG A+ Y+R +LS++A Sbjct: 15 SRISKVLSFIHQHISEPLSLDDIARQSCWSRWQLQRVFQTETGMAVATYVRELKLSQAAE 74 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 L T+ ++DIAL+ F S+ +F+R+FK+ F +P YR+ G+R P+++ + T Sbjct: 75 RLIDTSDRVIDIALELGFSSEISFSRSFKQVFGLSPRAYRKQG--LRTGLRKPIQVSQRT 132 Query: 125 -------MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 E + + + L G+ + DF+ ++ WH P P Sbjct: 133 AEEACPLFVEVRVESKNEFFLKGLHGEINGLFALNPDFQQKV-PALWHRLEQTLPDEPER 191 Query: 178 LYGLNET-RPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFTY 229 L +Q D + Y + +++ Y + + Sbjct: 192 PVALTGVIDITQSHFDGSNMEYWAGVELTDDLLLPQLPSAISSELSTLVVPAQTYAVVKH 251 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + + + +P G ++E Y + + E IP+ R Sbjct: 252 CGPVVHLPKTLEWFLLNWLPNSGYRGIDGYELECYPANYNQ----HDTDAVMEYWIPVER 307 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 108/287 (37%), Gaps = 11/287 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ ++ HL + + L ++A + +S ++ R+ K G IG +I R Sbjct: 10 EYQKCVNVVVEYINQHLGEDIDLKSLARISNFSPFYFHRIMKAFLGEPIGTFIVRTRTEA 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A LR + PI DIA + + S + ++ F++ + +P YR + + P + Sbjct: 70 AARLLRYSDIPIADIAYRIGYSSPSSLSKVFRQFYGISPLEYRNNKNFVIMK---PAIIR 126 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + + ++ +I + S L + +QF + P + Sbjct: 127 PDLELKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRL-WQFIKE--QKLPMGDFSPLCI 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P ++ + A L G Y +F Y+G +Q Sbjct: 184 YHDDPKVTPAEKLRTDVCMVMPVQVA--PKGDVGFKTLPAGRYAIFLYKGTYDNLQAVYD 241 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 T+YG C+P + T R ERY + P L E+ IP+ Sbjct: 242 TIYGKCLPEMECTLRDEPSAERYL---NNPCETAPEELLTEIYIPVE 285 >UniRef50_P96662 Uncharacterized HTH-type transcriptional regulator ydeE n=105 Tax=Firmicutes RepID=YDEE_BACSU Length = 290 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 112/296 (37%), Gaps = 14/296 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + A A S++H +RMF + G ++ YIR RRL+ Sbjct: 1 MDLLKSMNRALKYIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ + ++DIA++Y ++S +F RAF+ P+ R + R L Sbjct: 61 LAAFELKDSNVKVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQIS----DFRHEMRYQFWHDFLGNAPTI 174 + ++ E ++G+ + + I+ + + + + Sbjct: 121 TIKGGNEMNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVA 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 P L + ++ E+ + A + + + + +F G Sbjct: 181 PSGLISASTNFSEGRTEENGELDHYIGAATTK--RCPDNFSRLEVPASTWAVFESIGPFP 238 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE +Y P N + +G +I + + + E+ IPI + Sbjct: 239 DTLQEVWGRIYSEWFPSSNYEQIEGPEI-----LWNEHKDVTSPSFKSEIWIPITK 289 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 120/299 (40%), Gaps = 24/299 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++L++++ +LD LS + +A A +S H R+FK + G ++ ++R RL ++ Sbjct: 8 YNERMMEVLLYIQRNLDGDLSPETLAELACFSVAHFHRIFKGMVGESLKEHVRRLRLERA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS-------AFGIR 115 + L + +++IAL F+S +TF+RAFKK+F +P+ +R + R Sbjct: 68 SYRLCYSNTTVMEIALDAGFESPETFSRAFKKRFLVSPSDFRNNSRTMLALGGDGKIHYR 127 Query: 116 PPLRLGEFTMP------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 169 P + F + E + T ++ ++ + + +++ ++ + L Sbjct: 128 PDPNIESFELDSTPHSCEVEIRTRDEIQVVFI--RHVGPYPKVTKAWEKLCGWGFGKGL- 184 Query: 170 NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 + GL+ P + + + ++ ++ GG+Y + T+ Sbjct: 185 --FSEKTEFLGLSYDDPDITPEGKIRYDACFTVNEEV--ETPPEMGLQVIPGGKYAVTTH 240 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKG-QDIERYYPAEDAKAGDRPINLRCELLIPI 287 G + +YG +P + E+Y P E+ + + Sbjct: 241 YGPYEKMHGIYRELYGKWLPSSGYQLKNTIPSFEKYIKV---PPDVPPEEAVTEIWLAV 296 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 119/296 (40%), Gaps = 21/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + L ++ VA A S +H QRM+ +TG I Y+R RRL+ Sbjct: 1 MDWLDSMNKAVEYIEDNITEKLDIEKVAKIALSSPFHFQRMYHVITGVTIVEYVRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A + I+++A +Y +++ + FT+AF++ + +P+ R + + Sbjct: 61 LAAQDIISGE-KIINVAYKYGYETPEAFTKAFRRMYGMSPSAAREPEANLKAYPKLSFHI 119 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWHDFLGNAPTI 174 + +K V E ++G + + EQ+ +F + ++++ + Sbjct: 120 SIKGDKDMNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWI-CSKVG 178 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 + G+ + + E Y + + D + + +F G Sbjct: 179 KLGVLGICKDF------GKDEFNYMIGVE-EIKDSIPKGYVSATIPAATWAIFESSGALP 231 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q+ ++ +P ++E Y + +CE+ IPI++ Sbjct: 232 DAIQDLTRRIFTEWLPSTGYEHACAPELEIYPE-----GDIYSSDYKCEIWIPIKK 282 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 18/289 (6%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + +L ++ +LD LSLD +A A S++H R+F VTG + +IR RL + Sbjct: 4 DYEKRLLRVLDYVYDNLDGDLSLDTLADVAALSRFHFHRVFTAVTGEPVAHFIRRVRLHR 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL- 120 + + L + P+ ++A + +D+ ++F+R+F+ F +TP+ +R + PPLRL Sbjct: 64 AGLELLSSDAPVAEVAAKMGYDNARSFSRSFRDAFGRTPSEFRAHAQ-----PVPPLRLG 118 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 GE M + K L + QI + + LG + Sbjct: 119 TSGETQMYDVKIEDQPARRLGVIDHR--GPYIQIGEAFEKAGSTVMARGLGP---HLGAM 173 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 G+ P ++ D+A V L+GG++ + T+ G TG+ + Sbjct: 174 LGIYFDDPENGAAEDLRS--AAGFEMDEAAEITPPLREVRLEGGKHAILTHTGPYTGLAQ 231 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++G + R+ E Y + P +L + +P+ Sbjct: 232 AYKYLFGEWLATAGEMPREAPPFELYV---NTPMNTAPDDLVTLIGVPL 277 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 117/291 (40%), Gaps = 19/291 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E HL + + D++A A YS +H QR F +TG + Y+R RRLS Sbjct: 1 MDWVRSLNYAIDYIEVHLSENIVCDDIAQSAFYSSFHFQRTFSLLTGMTVSEYVRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L ++D+AL+Y +D+ ++F +AF++ P+ ++ R L++ Sbjct: 61 LAAQELLNYDSKVIDVALKYGYDTPESFAKAFRRFHGVLPSQAKKHGTELKAFNRLTLKI 120 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN-APTIPPV 177 ++ ++K + ++ T+ ++ IS FW ++ + Sbjct: 121 VLEGGSVMDYKIEKKDSFRVVTKTRKFTEENRIIS------IPMFWSEYCEDGLHQKVCG 174 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGV 236 ++G+ + D +E Y + + + + +F G + Sbjct: 175 MFGICL----PGEPDCKEFEYGIGCEEKYVKQIPEGFITIDIPSYTWAVFKCVGAMPDSI 230 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 Q +Y +P G DIE Y + + E+ IP+ Sbjct: 231 QNMWRRIYSEWLPQSKYELIPGYDIELYTE-----GDIKSEDYISEIWIPV 276 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 126/288 (43%), Gaps = 13/288 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + D + ++E HLD L LD +AA A S++H QRMF+ +TG+A+ YIR RR++ +A L Sbjct: 1 MLDSIEYIENHLDNELLLDEIAAVACMSRFHFQRMFRMLTGYAVSEYIRNRRITVAAQEL 60 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPLRLGEFT 124 + ++D+A++Y ++S ++FT+AF++ +P+ ++ + + ++L Sbjct: 61 VHSKSKVIDVAMKYGYESPESFTKAFRRIHGISPSDAKKHSQSLKAYPKISFQIQLKGDV 120 Query: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN--APTIPPVLYGLN 182 ++K V + ++G + + I + FW++ N + + L Sbjct: 121 EMDYKIVEKDAFTVVGKSIRTT----TIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLG 176 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFIL 241 D D +QE A+ +D + + + +F G + + Sbjct: 177 LLGICIDFDKQQENLTYLIAAEKNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKVWE 236 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 ++ P G ++E Y D + E+ +P+++ Sbjct: 237 RIFSEWFPATGYEHSGGPEMEVYVSDADPY----SKDYYSEIWVPVKK 280 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 103/291 (35%), Gaps = 15/291 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + +E LD+ L+L ++A A +S +H R+F +TG +GAY+R RL + Sbjct: 8 DWQRRVLAAMRLMEARLDEELALSDIAGAAHFSPYHFHRIFVGMTGETVGAYLRRLRLER 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-----RSPEWSAFGIRP 116 +A L +P+ +AL+ F+S + F RAF+ + +P+ +R R P Sbjct: 68 AAQRLCYGDQPVTTVALEAGFESPEAFARAFRAVYGVSPSAWRQASRERKGPPETPKHLP 127 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 P + + TL + V + +Q + + Sbjct: 128 PAKEFVIMELDVVIKTLPLMKVACV--RHVGPYDQCEPAWASLCAKA---GPLGLFGPDT 182 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 G+ P ++ + A + G +Y +G T + Sbjct: 183 KFIGIGHDDPQITPPEKIRYDACMTVPDSFAG--TPDLPVASIGGRDYASAVVKGPYTNL 240 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + G P +E Y + P L E+L+P+ Sbjct: 241 APAYAWLCGVWGPDCGREFAMEPSMEIYL---NDPKTTPPDQLLTEILVPV 288 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 13/297 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++E HL +P+SL+ VAA A YS +H R+FK G + YI+ RRL+ Sbjct: 1 MSYIQSVQRAIDYIETHLHEPISLEKVAAHASYSYFHFHRLFKATVGCTMSEYIKRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW----SAFGIRP 116 K+A AL T I+DIA +Y ++SQ+ FTRAFK+ F P YR++ + Sbjct: 61 KAAYALLETKASIIDIAFEYGYESQEAFTRAFKQWFNVLPGKYRQARPPVQLIDPYWAVK 120 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEM---RYQFWHDFLGNAPT 173 + + VT + ++G+ SL SD WH Sbjct: 121 TFPVNATGDHKPYIVTRQPLQVVGLQLEG-LSLPGGSDREQTTQVAIPSLWHQLEARIHE 179 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTYEGL 232 I + S D Y + + D ++GG Y F Y+G Sbjct: 180 IERRVDPFVSYGISSPSRDGSHFTYMACVEIEAGDVNIPQGFIQKEIKGGTYASFHYKGA 239 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + +YG+ +P G +IE Y D + + E+ PI++ Sbjct: 240 ANQLSALTNYIYGSWLPSSQYQSHFGVEIEVY----DEREPKEDGEVAVEIWTPIKK 292 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 23/301 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ HLD PLSLD +AA++ +S+W LQR+F+ TG + Y+R +LS +A Sbjct: 12 NRISKVLGFIHRHLDTPLSLDEIAAQSCWSRWQLQRVFQAETGLTVANYVRQLKLSLAAE 71 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG--- 121 L T + ++DIAL F+S+ F+RAFK+ FA +P +YR++ + + G++ P+ + Sbjct: 72 LLLDTDQRVIDIALATGFNSEIAFSRAFKQFFACSPRVYRKAGQRT--GLKKPIEISEVQ 129 Query: 122 -----EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP- 175 E + E + T L G+ + +F ++ + W A + Sbjct: 130 INGEREQSFVEVRVETKPAFILKGMRGEITGLFSLDPNF-ADVVPKLWQRLDAEANSTSL 188 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFT 228 + L ++ D +FY + + + Y Sbjct: 189 SFGHCLGVVDVTKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVK 248 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++G + + + +P G ++E Y + E +PI Sbjct: 249 HKGPIDRLPQTLEWFILHWLPTSGYRGVDGYELEVY----PDDYQADAAHAEMEYWVPIV 304 Query: 289 R 289 R Sbjct: 305 R 305 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 10/291 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + ++ ++ HLD+ L+L ++ A +SK+H R+F TG ++ YIR RL Sbjct: 1 MNYEYQLIKVIEFIGKHLDEKLTLAQLSDVACFSKYHFHRLFTAYTGLSLQQYIRWLRLK 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPL 118 ++A L + I++IA+ F+S + FTRAFK+ +P + P W + L Sbjct: 61 RAAHQLIVDKDKTIIEIAINAGFESNEAFTRAFKQVCGVSPTKFISQPSWHGWEKSAYCL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 ++ L V E++ + +++ + N Sbjct: 121 SNRGKMTMNIVIKNMQARRLAVVEHHGHP--EKVGESINKLINWAKSQAM-NLKPKAGEA 177 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 +G P + + + + + L G Y + +EG + + Sbjct: 178 FGFAYDDPKTTEPEAFQFDLGITVPEQLKLE--GNVIEKRLPAGRYAVAMHEGSRDNIDD 235 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 I +Y +P I YY + LR E + +++ Sbjct: 236 TIYGLYRDWLPNSGEELGDLPCIFCYY---NFDHEVAETELRTECWVFLKK 283 >UniRef50_B6XK96 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B6XK96_9ENTR Length = 310 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 115/294 (39%), Positives = 164/294 (55%), Gaps = 9/294 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK TG A+GAYIRARRLS Sbjct: 17 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKTQTGLALGAYIRARRLS 76 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G R PLR Sbjct: 77 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFRLPLRE 136 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + V L+D L+G+T Y+ + + + E+R Q+W +FL + LY Sbjct: 137 SKELEAHVQLVELKDIHLVGMTHRYTQGINEWNLKTEELRRQYWKNFLDKNKLVAQNLYA 196 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG--TGVQE 238 ++ D+E Y+TA ++ + +M+ G Y+ ++G T + Sbjct: 197 IHGVD--TTSDEEGRFLYSTAFEENALEVIPPLTKKLMVPAGNYLQIKFKGSLQGTDYND 254 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGD---RPINLRCE--LLIPI 287 I TVYG + +++ R G DIE Y D P + E IP+ Sbjct: 255 IIYTVYGKVLAEMDIARGLGADIEHYALKSAPTYEDFVSHPHDYIQELNYYIPV 308 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 19/292 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q I +L ++ +LD PL L +A ++ +S+W LQR+F TG + Y+R +LS++ Sbjct: 43 QLTRIERVLDYIHANLDLPLGLAELAEQSCWSRWQLQRVFLHETGLTVAHYVRELKLSQA 102 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A AL + +LD+AL Y F S+ +F+RAFK+QF +P YR+ G+R PL Sbjct: 103 AEALLSGRQRVLDLALCYGFGSEVSFSRAFKQQFGCSPLAYRKRG--LRLGLRTPLVRAA 160 Query: 123 FTMP------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 P + + + L GV DF + W P Sbjct: 161 LPQPMPARLVQVRIESPPGFILQGVKGQIRGLFAAAPDF-QQTVPAIWRALRTAGGLPPG 219 Query: 177 -VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ + + + Y ++ + + Y + ++ G + Sbjct: 220 QERVGVVD-----VSGAGESLPYWAGSVMEEGASLPAGLARLPVPAQTYAVLSHVGPVSQ 274 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + +P G ++ERY P D + R E +P+ Sbjct: 275 LGQTLNWFIQHWLPSSGYRGLDGFELERYAPDFDG----NQPDARMEYWLPV 322 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 106/283 (37%), Gaps = 16/283 (5%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 +L + HLD+PL + +A A S +H R+++ + G + +R RL ++A L + Sbjct: 1 MLDHIYDHLDEPLDIGRLAEIACLSPYHWHRIYQAMYGETVATTVRRLRLHRAAGFLANS 60 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 + PI IA + + S Q+F+R F+ F PA YR S F RP L + + Sbjct: 61 SMPIAQIAERSGYSSLQSFSRTFRAVFGVPPAQYRSQGTHSRF--RPALSGDDQMTMIRE 118 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISD-FRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 V P+ ++ + S QI F + H+ L + G+ P Sbjct: 119 VVIRYVEPMEILSVDHVGSYMQIGKAFDALFGWLAKHNLLAGQ----MRMIGVYFDDPGV 174 Query: 189 DKDDEQEVFYTTALAQDQADGYVLT------GHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 ++ L ++GGEY + + G + ++ Sbjct: 175 VEEQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAYDW 234 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 +YGT + E Y ++ P L E+ + Sbjct: 235 LYGTWLVQSGREAADAPVFEEYL---NSPKETAPAELVTEICL 274 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 116/302 (38%), Gaps = 25/302 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +L+ ++ +LD+ +SLD +A A +S++H R+F+ +TG +G ++R +L ++ Sbjct: 38 YESRLLRVLVHIQRNLDRAMSLDELADVAAFSRFHFARIFRAMTGETVGEHVRRLKLERA 97 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR------RSPEWSA----- 111 A LR T + + +IAL FD+ + F+R FK QF P+ +R R P + Sbjct: 98 AGKLRHTRQTVTEIALDAGFDTPEAFSRTFKAQFGDPPSRFRVLRGSFRPPRSPSGVHYD 157 Query: 112 ----FGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF 167 P + + + P + + I + Sbjct: 158 QDGVLRGFTPYQGADPMTLDVSTREFPTYPFAFL--RHVGRYNDIGPVFRRVAAIADER- 214 Query: 168 LGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 + + PS DEQ + ++ + GG Y + Sbjct: 215 --RLFGPDTKVMMVAYDDPSVT--DEQRLRSDAGVSLTDPTVDTGELIKGEIAGGLYAVT 270 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 Y+G G++ + G+ +P ++ Y + RP +L E+ +PI Sbjct: 271 VYKGPYDGLRNCYDWLMGSWLPNSGYEAADRPCVDVYL---NKVEDTRPEDLLTEIRVPI 327 Query: 288 RR 289 RR Sbjct: 328 RR 329 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 10/287 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + + ++ HLD PL L+ +A A S +H QR+++ + G +I +R R+ ++ Sbjct: 16 YAASVARVHAYISAHLDGPLDLNRLAEVACLSPYHWQRVYRALYGESIVLTVRRMRIVRA 75 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + L TARP+ +IA + + S F RAF+ + PA +RR+ PL+ GE Sbjct: 76 SEDLVCTARPLDEIARRAGYGSTHAFARAFRDAYGVLPAQHRRTGTHRPIY---PLQRGE 132 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 M +H+ L G +++ + ++ D + W G + G+ Sbjct: 133 ADMFKHEVEIRRLPALRGYAVTHTGAYMKVGDAFERIG--AWVGQHGLIG-PGAKMIGIF 189 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P + + A D V V + GGEY + + G ++ Sbjct: 190 YDDPDTTPEAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQ 249 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG + E Y + P +LR E+ +P+R Sbjct: 250 WLYGDWLRHSGREAADAPPFELYL---NTPMDTAPADLRTEIHLPLR 293 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 106/320 (33%), Gaps = 38/320 (11%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E HL + LSL+ +A A +S +H R+F + G + +I+ R+ K Sbjct: 15 EYICRINRAIDYIETHLSEKLSLETIAKAAFFSPFHFHRIFHGLVGETLNRFIKRLRVEK 74 Query: 62 SAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP---- 116 +A L + + DIAL F + T +RAFK+ F+ +P +R++ + I Sbjct: 75 AARMLADNPKQTVSDIALDCGFSTTSTLSRAFKETFSMSPTAWRKASSATQSKICQTFRK 134 Query: 117 ----------------------------PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCS 148 + + + + + + + V + Sbjct: 135 THQPIGSARKNYVIHTSYFDRASHHQTWRIEMPKQNEIQVTVKDMPEMTVAYVRHIGAYK 194 Query: 149 LEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD 208 + + W G + + P+ + + ++ + Sbjct: 195 SNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDPNITDEQKLRTSVCISVPPN--T 252 Query: 209 GYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE 268 + + GG+Y + +E + + ++ +P E Y Sbjct: 253 EVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSAWLPESGYQPDDRLSYEIYL--- 309 Query: 269 DAKAGDRPINLRCELLIPIR 288 + E+ +P+R Sbjct: 310 NNPNTHPEGKHIVEICVPVR 329 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 96/323 (29%), Gaps = 45/323 (13%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + L+ + +L PL+L+ +AA + +S +HL R+F V G + A+IR R+ ++ Sbjct: 10 YESRVNRLIDHIVNNLSGPLTLEEMAAVSSFSPFHLHRIFSTVMGETLAAFIRRVRIERA 69 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP---- 117 AV L R + DIA F S Q RAF + P +YRR G+ P Sbjct: 70 AVLLLWNPTRSVTDIAFACGFSSSQNLARAFTRHMGMPPGVYRRCRREEGCGLTPAGAGN 129 Query: 118 --------------------------------LRLGEFTMPEHKFVTLEDTPLIGVTQSY 145 L + + + + + Sbjct: 130 DDNGKNGNAGGMGLWHGGDAAGASGHHLHLAHSLLERSATMDVRIEEMPRFHVAYLRHVG 189 Query: 146 SCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQD 205 + I + W G G++ P + +A Sbjct: 190 PYTEATIGPVWGRLME--WAGARGLL-RPGVKTLGVSWDDPEVTPPEHCRYDACIVIAPG 246 Query: 206 QADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYY 265 + GG Y ++ E ++G +P + E Y Sbjct: 247 V--EVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFGQWLPTSGMQADDRPCFELYN 304 Query: 266 PAEDAKAGDRPINLRCELLIPIR 288 A + +P+R Sbjct: 305 DVMQAPPEGP---WDVSICMPVR 324 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 25/304 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+Q I+ + ++E L + L+L VA YS++H R F G + +YIR RRLS Sbjct: 1 MNQINTIQKSIDYIEERLGEGLTLAEVAKAMFYSEYHFHRTFLFFVGETMTSYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-PPLR 119 +A L + I+DIAL+ F S + FTRAF+K + P RR R PLR Sbjct: 61 LAAELLAHSDLKIVDIALRCGFGSHEAFTRAFRKMYGILPTECRRRGRPPYLVPRANPLR 120 Query: 120 LG--------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL--G 169 + +++ + ++G + Q H+ FW ++ Sbjct: 121 DFVAQITYDWGEYVMQYRIEQIPAKRILGFAIQTTTEDGQ----NHKDIPAFWQKYMHEQ 176 Query: 170 NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 +P L+ E D++ Y D+ + Y +FT Sbjct: 177 WGSRVPGKLHPNVELGVCTALDEDGTFRYIIGFEVDETTEVQEGLTEYRVPAQTYAIFTT 236 Query: 230 E--GLGT---GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 G +Q+ ++ + P + D E Y K G + ++ Sbjct: 237 PPAGEADFSSSIQQTWDEIFTSWFPTSGYEQVAAPDFEWYDERCWPKEGK-----QIDIY 291 Query: 285 IPIR 288 IP++ Sbjct: 292 IPVQ 295 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 114/287 (39%), Gaps = 15/287 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I +L ++ + LSLD +A A S++H R+F+ +TG G +R RL ++ Sbjct: 5 YEDRILRVLRYIHDNPAGDLSLDRLADVAAMSRFHWHRVFRALTGETCGQSVRRIRLHRA 64 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS-AFGIRPPLRLG 121 AVAL + I +IA + S+ +F+RAF + P +R +R P Sbjct: 65 AVALAHSDASIEEIAATVGYPSRHSFSRAFTAAYGDAPGAFRAKGLHLPPLALRDP---K 121 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 E +M L+ V +I + + P + PVL G+ Sbjct: 122 ELSMHNVTLRDEPARHLVTVPHR--GPYAEIGRAFE--HFSALANSRNLWPQLGPVL-GV 176 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P + +D+ + + + DG P L GG+ + T++G G+ Sbjct: 177 YLDAPGEMPEDQLRSYAGA---EYRGDGTPEGLEPFALPGGKAAVLTFKGPYAGLAAAYD 233 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +++G +P T E Y + P L E+++P+R Sbjct: 234 SLFGGWLPQSGETPADQPCYEIYL---NDPRATAPEELLTEIVLPLR 277 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 100/288 (34%), Gaps = 14/288 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + +L ++ HLDQ L ++ +A A S +H R+++ + + A +R RL K Sbjct: 8 NYRRRLCRVLDYIHNHLDQDLDVNALAEVALMSPYHFHRIYRQMANETVNATVRRLRLQK 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR------ 115 +A L + + IA + S + F RAF K++ ++PA YR + Sbjct: 68 AASDLIRSNLSLDRIAKDVAYSSPEAFIRAFSKEYGESPAAYRDKRQQPIIPTEQLSVEL 127 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 PL TM + + E T L+G +E + F + +G Sbjct: 128 QPLSKECKTMFNVEMMEFETTNLLGYEHKGDY-MEIGNAFDKLFMFAGSKRLIG----PE 182 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 G+ P E ++ + + + G ++G Sbjct: 183 TRSIGIYYNDPGSVDASELRSHACISVEAPRDAEEEQDPENLQIPAGRCATLLFKGPYAE 242 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 +++ +G +P L E Y + P L + Sbjct: 243 LEKPYNWFFGQWLPQSGLEAADFPPFEEYL---NDPRTTAPSELLTRI 287 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 24/304 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I+ + ++E H+ + LSL +A A S +H R+F+ + G + Y+R RRL+ Sbjct: 4 DYLAQIQQTIDYIEAHISEELSLSRLAQVAKLSDFHFHRVFQSMAGETVMEYVRKRRLAI 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG------IR 115 SA + + ++DIAL F + +TFTRAFK+ F TPA YR+ R Sbjct: 64 SAYQVANSDAKLIDIALDTGFQNHETFTRAFKRMFEMTPAEYRKREIKPPAYSRLNVLQR 123 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSC---SLEQISDFRHE-MRYQFWHDFLGNA 171 E+K +T +IG + ++I F E ++ + + + Sbjct: 124 KYNPYLGGIRMEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRV 183 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGY-VLTGHPVMLQGGEYVMFTY- 229 PV G+ Y + + DG G EY +FT Sbjct: 184 HKESPVELGICYNFDMGSD----SFSYLIGMEAESFDGVEGEGLVCREFDGAEYAVFTTP 239 Query: 230 ----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 E + +Q +TV+G P + E Y D ++ ++ ++ I Sbjct: 240 KVPREQFSSSIQNTWMTVFGEWFPHSGYEHAGTPEFELY----DERSNHELSEIQMDIYI 295 Query: 286 PIRR 289 PI++ Sbjct: 296 PIKK 299 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 111/287 (38%), Gaps = 9/287 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +LE HLDQPL ++ + +K +SK+H +F+ G + A + L + Sbjct: 3 NNHVRLEKVVRYLESHLDQPLVIEELLSKFYFSKYHFHHLFRAYYGEGVYAMRKRLLLER 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A ++ + +IA +++Q +F +A +KQF+ TP+ R A + Sbjct: 63 AARSIIYGVESMTEIAFSCGYENQASFNKAIRKQFSCTPSYIRHQKTVPALKGQQLTSFE 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + V + T ++ S + + + M + + + + ++ G+ Sbjct: 123 DIK-MNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLIQ----PETIMIGI 177 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 + P+ D + + + GG+Y ++G + E Sbjct: 178 SHDDPNITLVDNIRYDACATIVTEM--ELPEGIDRKTILGGKYAKALHKGTYEKLSEAYS 235 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +P R E Y +P NL+ E+ IPI+ Sbjct: 236 YLLLKWLPDSGFELRDQPCFEVYLNR--DPRRTKPENLKTEIYIPIK 280 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 110/318 (34%), Gaps = 39/318 (12%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +++ H + LSLD +AA A +S +H R+FK +TG + +I+ RL Sbjct: 35 EYQRRVNRVIDYIQAHRAEDLSLDTLAAVAAFSPFHFHRVFKSMTGENLREFIQRTRLET 94 Query: 62 SA-VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR--------------- 105 +A ++ IL+IAL+ F S F RAFK++F + + +R Sbjct: 95 AASHLVQRPHADILEIALENGFSSASAFARAFKERFGMSASAWRNGGATDERNARQADRK 154 Query: 106 --------------SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYS-CSLE 150 +P+ A R E + TL + V Sbjct: 155 PGQVERNPCKAAACAPDQDASSSGTDARQDEEEIMNVTVKTLPSYHVAYVRNVGPYGPEG 214 Query: 151 QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGY 210 + + + + T + + P + + + + QD Sbjct: 215 SVGEAWQRLVRWASAR---DLWTPDRICLSIAHDNPKVTEPAKCRLDAAIVIPQDFKA-- 269 Query: 211 VLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDA 270 + + GG+Y + G + ++G +P E Y Sbjct: 270 DGDVNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGKWLPESGDQPDHRPCFELYRG---E 326 Query: 271 KAGDRPINLRCELLIPIR 288 + N RCEL +P+R Sbjct: 327 FHDPKTHNFRCELCLPVR 344 >UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EE80 Length = 285 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 109/293 (37%), Gaps = 15/293 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + + ++E ++ + + A A S +H QRMF +T + YIR RRL+ Sbjct: 1 MDWVQRMNEAIGYIEANITEEIDYAEAAKVACCSAYHFQRMFPFITDVTLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L+ + ++D+AL+Y +DS + F RAF+ TP R++ R + Sbjct: 61 LAAYELQNSDIKVIDLALKYGYDSPEAFARAFQNMHGTTPTAARQAGTKLKAYPRISFQF 120 Query: 121 G--EFTMPEHKFVTLEDTPLIGVTQSYSC--SLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 ++ ++ ++G + S + E++ + + D L N Sbjct: 121 SMRGAAEMNYRIEEMKAFSVVGFKKQVSTQRAYEEVPFLWKDAHAEGIFDKLWNYRAHEH 180 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + G+ D + Y ++ + +F EG G+ Sbjct: 181 PIRGILGVCADGDYGKNEYFDYIMSVVSTH--NPPEPMVLRHFPAAAWAVFELEGDPKGI 238 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 E +Y +P IE Y P + EL IP+ R Sbjct: 239 AEMWKRLYTEWIPSHAYDLAPLPAIECYL---------PPDEYKNELWIPVIR 282 >UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria RepID=A6M032_CLOB8 Length = 285 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 62/295 (21%), Positives = 121/295 (41%), Gaps = 17/295 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I + + ++E ++ + +++ N+A K S ++ Q+ F + G +G YIR RRL+ Sbjct: 1 MKWIEGIGEAISYIEENITEEITIKNIAEKTFMSPFYFQKGFAMLCGFTVGEYIRQRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE--WSAFGIRPPL 118 + L T I+DIAL+Y + S +FT+AF + TP R+ S ++ Sbjct: 61 LAGSDLVSTDEKIIDIALKYGYASPDSFTKAFTRFHGVTPTAVRKDGAMIKSFAPLKIKF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVT--QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 L + ++K V + ++GV+ Y + +I F E F Sbjct: 121 LLEGGYIMDYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTEHYEAGKGKF-------VC 173 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTG 235 +YG++ + Y A + + ++ + +F +G Sbjct: 174 GMYGISIDESMGSDE----FEYLIADNYNPSIEIPNGFVTKIIPKHTWAVFACKGAMPKS 229 Query: 236 VQEFILTVYGTCMPMLN-LTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q+ ++ +P G +IE Y D G++ N E+ IP+++ Sbjct: 230 LQDMNRKIFSEWLPNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPVKK 284 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 13/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E +L+Q L ++VA GYS +H R+F+ + G IG YIR R+++ Sbjct: 1 MDYIKSLEKAIMYIEENLNQDLKTEDVAKSIGYSYYHFTRLFEGLLGETIGNYIRKRKIT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-- 118 K+A L T + I+DIAL ++F S + F RAFKK + +P YR++ G + + Sbjct: 61 KTAQDLIYTDKRIIDIALDFQFKSPEAFARAFKKIYDISPTEYRKNRIDVLKGNKKYIDN 120 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + + + + +IG+ S + D + Sbjct: 121 ERLKHILNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNK---NSSKIVNKAE 177 Query: 175 PPVLYGLNETR-PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 P YG+ E P+ + + D ++ G+YV+FT++G Sbjct: 178 PLKYYGICENDRPTNQFGENVAYSEIVGIEVTSFDYIPEGMVAKVIPQGKYVVFTHKGSI 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +QE ++GT +P + D E Y ++ G ++ IPI+ Sbjct: 238 HKLQETYEYIWGTWIPFSKVELDMRDDFELY---DEGFKGANNHLSEIDIYIPIK 289 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 106/288 (36%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +L +++ HL+ LS++ ++ A +S +H R F G + Y++ RL ++ Sbjct: 10 YMKRFETVLAYIDSHLEGDLSVNALSRIANFSAFHFHRQFTAYMGVPVSRYVQLMRLRRA 69 Query: 63 AVAL-RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-RL 120 A L A PIL+ A F+S + F RAFK+ F P+++ ++P W A+ + + Sbjct: 70 AHQLVASPAMPILEAAFGAGFESPEAFARAFKRAFGMAPSVFAKAPNWQAWSAVFNVPQR 129 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + V +T + + L R++ W G +P +G Sbjct: 130 SRSITMQIRIVNFAETHVAALEHQGPPGLV----SESVARFRQWRMHSGQSPVASSRTFG 185 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P + + H ++ G + + G + E I Sbjct: 186 IPYDNPDTTPAHAFRFAVCGEI-DEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETI 244 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P N R Y + ++ +P++ Sbjct: 245 YPLYRDWLPSSNEELRDHPLFFHYLSVYPE---TPLEQWQTDIYVPLK 289 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 108/286 (37%), Gaps = 9/286 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ +LD + + +A + +S +H R+ + + G IGAYI R+ + Sbjct: 11 YQQNLNRVIDFIHNNLDSKIDIALLAELSHFSPYHFHRITRALLGEPIGAYITRARIETA 70 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LR + I IA + F++ + ++AFK F +P+ +R E+ ++ E Sbjct: 71 AKLLRYSENSIEQIAYKVGFETPSSLSKAFKNHFGISPSAHRNKKEFIIKKQNI-MKTKE 129 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + K V LED + T + ++ + T GL Sbjct: 130 LNIKKPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQ---KLFTKGIKHIGLP 186 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P + D+ + +D L+GG++ +F Y+G + Sbjct: 187 YDDPKITEADKIRYDACLIIHKD--AKPNGDVGVKELKGGKFAVFLYQGSYKHFADVYDH 244 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ + R E+Y + L+ E IPI+ Sbjct: 245 MFNAWLINSGHELRDAPSREKYISDARRVS---EEKLKTEFYIPIK 287 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 114/313 (36%), Gaps = 34/313 (10%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + ++ +++ HLD + L +A A +S +H R+F G +G Y+R RRL Sbjct: 13 EYTQRMNRVMDYIDSHLDGDIDLAALADVAHFSPFHFHRLFAAWMGATLGDYVRRRRLEV 72 Query: 62 SAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAF--GIRP 116 +A+ L T +L++AL F S + F RAFK +F Q+P+ +R + W+A G+R Sbjct: 73 AALQLAGNTRISVLEVALGVGFGSGEAFARAFKLRFGQSPSAWRAATPQRWAAELRGVRK 132 Query: 117 PLRLG---------------------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDF 155 P + F+ + TL + + + ++ F Sbjct: 133 PHQAESNLDQAGHSANGHHDAMSDSQSFSSMQVTLTTLPAVRVAYMRHVGPYGVS-VNQF 191 Query: 156 RHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGH 215 + W +G P + + D + Sbjct: 192 WT-GTFLPW--CFAQGLLPGASSFGRGLDDPHITAPEHCRYDAMVQVPDDFVARSPASM- 247 Query: 216 PVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDR 275 L GG Y + +EG + + +P + E + DA+ Sbjct: 248 -ATLPGGRYAIAPFEGTVPQLTVAWTELLRDWLPASGMKLDGRPLFE--HMPPDARYDAA 304 Query: 276 PINLRCELLIPIR 288 ++CEL IP++ Sbjct: 305 TGVMQCELCIPVQ 317 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 11/286 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ ++++ + L+ +A A +S +H R+++++ + +R RL + Sbjct: 10 YRDRILAVVDYIWRNIERDVELNTLADVAHFSPYHFHRIYREMMHETVSTTVRRLRLHYA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA-FGIRPPLRLG 121 A L T + IA + S + F+RAF + + TP+ YR+ + P R Sbjct: 70 ACQLLRTNHSVETIATTLGYGSGEAFSRAFSRAYTVTPSAYRQQRSPLPEAKMALPSRRF 129 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 L G+ I ++ N +G+ Sbjct: 130 YAMKHTVDIEKFNKVELGGLAHQ--GDYLDIGAVFEKVFVSAGSKQFLNEH---SRSFGI 184 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P+ L Q + L+ G + + T+ G + +++ Sbjct: 185 YYDDPTSKDKSALRSHACVTLNPQQVKE--AGLDYLTLEAGNHAVLTFTGPYSELEQAYE 242 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 YG +P E Y + P L ++ +P+ Sbjct: 243 WFYGEWLPQSGYQLADRPPFEEYL---NDPKTVPPSELLTKIYLPL 285 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 118/296 (39%), Gaps = 24/296 (8%) Query: 11 LIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTA 70 + ++ +L LSL+++A ++ +S+W LQR+F+ TG + Y+R +LS++A L Sbjct: 1 MAYIHANLSSALSLEDLATQSCWSRWQLQRVFQAETGLTVANYVRELKLSQAAEELLDGK 60 Query: 71 RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF------- 123 ++DIAL F+S+ +F+R+FK+ F +P+ YR++ + G++ P+++ E Sbjct: 61 DRVIDIALGLGFNSEISFSRSFKQMFGVSPSQYRKAGKR--VGLKKPIQVSETASNSENR 118 Query: 124 --TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY-G 180 + E + E + G+T S DF ++ Q W G + Sbjct: 119 ALSFVEVRIDEREPFLVKGMTSEISGLFSLTQDFAQKV-PQLWSRLEGEVEIPDANMLQF 177 Query: 181 LNETRPSQDKDDEQEVFYTTALA-------QDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + +Q D ++Y + + + Y + + G Sbjct: 178 IGVVDLTQSCFDGTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPI 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + + +P G ++E Y + E +PI + Sbjct: 238 EHLPHTLSWFVLNWLPNSGYRGVDGYELEMY----PFGYQAHASDAEMEYWVPIIK 289 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 110/292 (37%), Gaps = 11/292 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E +++ LS++ +A AG+SK+H R+FK + ++ Y+ +L + Sbjct: 9 EYLRRIYKVQDYIESNINDSLSIEELADVAGFSKFHFHRIFKGIVNESLSRYVNRLKLER 68 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 + L T I DIA + F F+R FK + +P+ YR + +R P Sbjct: 69 ATHLLTYRTDMTITDIAYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRGIPQY 128 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT--IPP 176 + + VT ++ + + + + E+++ +M + +H Sbjct: 129 NECKKVRGNVEIVTADNINVAYI--RHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDT 186 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + + +D ++ D++ +++ G+Y + +E Sbjct: 187 KVLTIYHDHHEFTEDYHLRTSLCVTIS-DESTVETNDVGIMVIPSGKYAVGHFEICQDEY 245 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +YG +P R E Y + ++ +PI Sbjct: 246 KGAWDFIYGEWLPNSGYKPRDSYPFEVYR---NDPKQHPKHKHIVDIYVPIE 294 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 16/288 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I ++ ++ LSLD +A A S++H R+F + G + IR+ R+ Sbjct: 1 MD---RILRVIDYIHTQAADDLSLDQLADVAAMSRFHWHRVFTAIMGASPAQIIRSVRMH 57 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+ + L T PI IA + + ++F+R FK + QTP +R + P + Sbjct: 58 KATMLLLRTDLPIAQIAAHVGYSNDRSFSRTFKDIYGQTPTAFRNAGFPGMAPHPNPQGV 117 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + T D L ++ + ++ + GN + G Sbjct: 118 SN--VFDVDIQTTSDKRLAALSHRGDYAEGSVAYQKVATIIST-----GNHWPQTRGMAG 170 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P ++ + + V L GG Y + ++G G+ E Sbjct: 171 VYYDNPEVTPTEDLRSH--AGVLWEGGA-IPDGLEEVQLTGGRYAVLHFKGPYAGLAEAY 227 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VYG + + R E Y + P +L ++ +P+ Sbjct: 228 RYVYGPWLSSSQESLRDAPSFEHYL---NDPTNTAPADLLTDIYMPLE 272 >UniRef50_A7FVD8 Transcriptional regulator, AraC family n=4 Tax=Clostridium RepID=A7FVD8_CLOB1 Length = 294 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 121/297 (40%), Gaps = 18/297 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ ++ + L ++E +L +++D+++ A S++H QR+F +TG + YI+ RRL+ Sbjct: 1 METIMLLNNTLEYIERNLHTAINIDDISKVACSSRYHFQRVFHSLTGFTVTQYIKNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L T R I+DIAL+Y ++S + FT+AFK+ +P+ ++ + ++ Sbjct: 61 LAAEELVSTDRRIIDIALKYGYESPEAFTKAFKRLHGISPSALKKLNGKIKAFPKISFQI 120 Query: 121 GEFTMPE--HKFVTLEDTPLIGVTQSYS----CSLEQISDFRHEMRYQFWHDFLGNAPTI 174 E ++ V E + G + + ++I +F +++ F Sbjct: 121 SIKGECEIIYRIVEKEAFKVFGTGFETTRINYAAYKEIPEFINKI---FKDGTHDRINEA 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 G D + Y + + + + +F G Sbjct: 178 LGNSKGSLLDGFHYDFKENGTRKYMMGYEIPR-TEISDEFTILQVPKLTWAVFEGYGAMP 236 Query: 235 G---VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q+ +Y P + +G IE+ + + +CE+ IP++ Sbjct: 237 DNLIIQDIWRRIYSEWFPSSGFEQVEGPCIEK-----NFWNNKKHDEYKCEVWIPVK 288 >UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LX8_CLOAB Length = 288 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 18/294 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ G + + L ++E +L++ + VA A SK++ R+FK +TG +G YIR R+LS Sbjct: 1 MNWIGDMNNALRYVEENLERNIESGEVANAAHMSKFYFLRIFKILTGMTLGDYIRERKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 + + T + I+DI+ +Y +++ + FT+AFK+ +P R+S + Sbjct: 61 LATKDIVSTNQKIIDISYKYGYETPEAFTKAFKRLNGISPTEARKSKNNLKAIPPLSFQV 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYS----CSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + +K T + + GV++ S + + I +F E++ + + Sbjct: 121 IVKGEENMNYKIETKKSFKIAGVSKRISTKEGNNFKIIPEFWDEVKKSGQCEIIEKNAGK 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 V+ G+ + QE Y A+ D+ +G + + + +F G Sbjct: 181 LGVM-GVCTNFDC----EYQEFDYLIAVEGDKIEGL-DNYVVIEVPELSFAVFESIGPMP 234 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q+ ++ P +G +IE Y + + R E+ +P+ Sbjct: 235 DALQDVTRRIFSEWFPATKYEEAEGPEIEVYL-----PGNPQDKDYRAEIWVPV 283 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 117/296 (39%), Gaps = 21/296 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++WLE H+++ +SLD++AA+A +S +H R+F+ V G ++ AYIR RL K+ Sbjct: 20 YRMRIMRAILWLEEHMNEAVSLDDMAAQAHFSPYHFHRIFRGVAGESVMAYIRRLRLEKA 79 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 L + + DIA +++ + F+RAF+ QF +P+ RR G+ P LGE Sbjct: 80 VHRLAYGSASVTDIAFDAGYEAHEAFSRAFRAQFGMSPSALRRHVR--KAGMIPAGVLGE 137 Query: 123 FTMPEH-----------KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA 171 M + + P+ ++ Q + + L A Sbjct: 138 SAMTKVVAGFTLESLGLEPEVKVLAPVRVAFVRHTGPYAQCEAAWKTLCDWAFPQGLVMA 197 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 T G+ P D+ ++ + + ++GGEYV ++G Sbjct: 198 QT---QFMGICYDDPEVTAPDKIRYDACISVPDNVQAEHP--VAIREVEGGEYVCAVWKG 252 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 TG+ + G R +E Y + L E+ +P+ Sbjct: 253 PYTGLTNAYAALCGQWGGRSGREFRAAPSVEVYLNDCTS---TPEQELLTEIRMPL 305 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 107/305 (35%), Gaps = 24/305 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I ++E +L + LSL+ VA +A +S +H R++ +TG ++ +I RL K Sbjct: 6 EYRRRINRAQDYIEQNLGRSLSLEEVAQQAAFSPYHFHRLYTAMTGESLYQFILRLRLEK 65 Query: 62 SAV-ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR---------------R 105 +A A+ R I +IAL+ F S TF RAFK +F + + YR R Sbjct: 66 AAAVAVACPHRSITEIALETGFSSPATFARAFKAKFGVSASEYRGRKDRKAVGKDRNALR 125 Query: 106 SPEWSAFGIRPPLRLGEFTMP--EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF 163 +A RP L T P L + + + RY Sbjct: 126 KDRNAAASTRPYLGEVMNTFPAQSINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCA 185 Query: 164 WHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 W G + + P +DD+ + +A + + + G+ Sbjct: 186 WAGPRGLLGAPNSEMVCIYHDNPEITEDDKLRISLGVTVAP--GTETSGEINLLTIPAGK 243 Query: 224 YVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 YV +E T+ G +P E Y + D E+ Sbjct: 244 YVCARFELTSKDYAGAWNTLMG-WLPNSGYQPDDRPVYETYLS---DPSEDPEGKHLVEI 299 Query: 284 LIPIR 288 + ++ Sbjct: 300 RMGVK 304 >UniRef50_B4EVW5 AraC-family transcriptional regulator n=3 Tax=Proteus RepID=B4EVW5_PROMH Length = 304 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 103/286 (36%), Positives = 156/286 (54%), Gaps = 1/286 (0%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I++LL+W+E +L++PL LD+VA K+GY+KWHLQR+FK TG + +YIR RRL+K+ Sbjct: 18 NIEVIKELLLWIEVNLEKPLLLDDVAIKSGYTKWHLQRVFKQATGLTLASYIRGRRLTKA 77 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A LRLT P+L IAL+Y+FDSQQ+FTR FK F TP+ YR+ + +PP+ Sbjct: 78 ATELRLTKLPVLTIALRYQFDSQQSFTRRFKAVFGVTPSEYRKVDVLCSDNFQPPINFEV 137 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 +P + L ++ L + Y CS+E I ++R+QFW+DFL L Sbjct: 138 TDLPIPNIIELPESFLYVIQYQYFCSIEDIGKLHEDIRHQFWNDFLLYTDKNFTESSVLI 197 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 +P+ + D+ ++ Y L + GG YV F ++G ++F + Sbjct: 198 SYQPNTLRKDKIQIDYEIGLNNLDHFTRPRGFRKKAIAGGRYVRFQFKGTLEEYKQFAIK 257 Query: 243 VYGTCMPMLNLTRRKGQDIERYYP-AEDAKAGDRPINLRCELLIPI 287 +Y +P L L RR G DIE Y D+ + P L + +PI Sbjct: 258 IYFYTLPALGLCRRLGPDIENYICIETDSDIMELPKTLEIDYYVPI 303 >UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP62_CLOCL Length = 292 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 111/296 (37%), Gaps = 14/296 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +++ + ++E ++ + ++ D +A A S +H QRMF +TG +G YIR RRL+ Sbjct: 1 MDWINSMQNAINYMEDNILEEINYDKIAQCAYSSTYHFQRMFSMLTGFTVGEYIRNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A L + I DIA++Y + + + FT+AF++ TP R S ++ Sbjct: 61 LAAQELSFSKERITDIAIKYGYGTSEAFTKAFQRFHGITPTAARESGVKLKSFNSLSIQV 120 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWHDFLGNAPTI 174 L +K + E + G + +I +F + + Sbjct: 121 TLKGDKEMNYKIIEKEPFKIFGKDFKTNIIGGRCFSEIPEFYAKCISDGTSAKIIRNAGK 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 P + + D + D + + + + +F E Sbjct: 181 PENGILDVGVLFNHNPQDGSMRYMIGCDVTDTNTNILTEFRILEIPSLTWAIFEVENNSD 240 Query: 235 -GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + P + ++ERYY D RCE+ IP+ + Sbjct: 241 EDIHEMWRRIGSEWFPASSYEHADAPEMERYYGNNDTG-------CRCEIWIPVIK 289 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 110/288 (38%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ + +++ HLD+ L +D ++ A SK+H R+F G + +I+ RL ++ Sbjct: 4 YTQKLQLVCDYIQRHLDEDLDVDRLSQIAALSKFHFHRIFAIHVGLNVMKFIQLSRLKRA 63 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL- 120 + L I++IALQ FDS + FTRAFK+ F QTP +R P+W ++ + + Sbjct: 64 SFQLAFEPDLKIIEIALQAGFDSPEAFTRAFKRSFDQTPRAFRDKPDWESWHQKFVFTIP 123 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 V + ++ S ++ W G +P YG Sbjct: 124 KSELKMNVNIVERPAEKIAYLSHLGSPD----KVLETAAQFIAWRKETGLSPVTKSKTYG 179 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P Q DE ++ + + + G Y + G +++ + Sbjct: 180 IPFADPDQTPADEFRFDIAGSIEKAVPEN-SYGVQTGEIPAGRYATVRHFGSHDQIKDSV 238 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ +P Y+ + +L ++ + ++ Sbjct: 239 YYIFRNWLPEQPEEAGDYPVFFHYH---NFVHEVNECDLITDIYLLLK 283 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 110/315 (34%), Gaps = 37/315 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ I ++ +++ HLDQPL L ++A A +S +H R+F + G YI+ R+ Sbjct: 9 IEYRSRINRVMDYIDIHLDQPLELKSIAEIANFSPFHFHRIFTFLIGETPIDYIQRLRIE 68 Query: 61 KSAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-------------- 105 K+A LR I +IA F + F+R FKK F TP+ +R+ Sbjct: 69 KAACRLRENMDISISEIADSCGFCTVSLFSRVFKKFFGLTPSQFRKMEKPVYAQDGILFS 128 Query: 106 ------------SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQIS 153 S ++ F + + + D + + + ++I Sbjct: 129 KNGQMVSKNLTPKHVLSPQLCSVKFKISYFMETKIEVKEMPDMKAVY--CRHMGAFKEIV 186 Query: 154 DFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLT 213 ++ W + G + PS + + + D Sbjct: 187 KAYEKLIK--WAEPRGLYIPNVTKSATVTHDDPSVTELSKVRQSACIIVEGDVKGE--GE 242 Query: 214 GHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAG 273 +++ GG+Y + +E ++ T+ + G E Y+ ++ Sbjct: 243 IGNLVIPGGKYAVGHFELGTEDFEKAWNTMC-KWFTESGYQQGDGCTYELYH---NSHRT 298 Query: 274 DRPINLRCELLIPIR 288 ++ IPI+ Sbjct: 299 HPENKHIVDICIPIK 313 >UniRef50_D1P487 Right origin-binding protein n=2 Tax=Providencia RepID=D1P487_9ENTR Length = 295 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 9/294 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +IR++++W+E +L+ LSLD VA K+GY+KWH QR+FK+ TG A+G+YIRARRLS Sbjct: 1 MLQESVIREIILWIEQNLESRLSLDTVADKSGYTKWHFQRLFKNQTGLALGSYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 SAVALRLT I+DI+L+YRFDSQQTF RAFKKQF TP+ YR+ W G PLR Sbjct: 61 CSAVALRLTNDSIMDISLRYRFDSQQTFCRAFKKQFGVTPSEYRKRTGWHIEGFCLPLRE 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + + V L + L+G+T Y+ + + + E+R Q+W FL + LY Sbjct: 121 SKELQAQVQLVELPEINLLGMTHRYTQGINEWNLKTEELRKQYWRTFLDKNKLVAQNLYA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG--TGVQE 238 ++ ++E Y+TA + + + G Y+ + G T + Sbjct: 181 IHGVD--TASEEEGRFLYSTAFNEQDMATVPPFSKSLKVPAGNYLEIKFLGNLQGTDYND 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAG---DRPINLRCE--LLIPI 287 I T YG + +++ R G DIE Y + P E IP+ Sbjct: 239 IIYTAYGKVLAEMDIVRSTGCDIEHYVLKSTPSYEEFVNYPHEYIQELNYYIPV 292 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 16/293 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + ++E HLD+ + L +V+ + GYS +H+ R+F V G +G YI RRL ++ Sbjct: 10 HLTPLERAIEYIETHLDENIDLGDVSREMGYSYYHMTRLFSAVLGEPVGRYISRRRLYRA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL---- 118 A L + R I+DIAL+ F S + F+RAFK F TPA YR++ + L Sbjct: 70 AQQLVHSDRRIIDIALESGFQSPEAFSRAFKALFKTTPAGYRKAGLDLVATAKRQLLPGD 129 Query: 119 --RLGEFTMPEHKFVTL-EDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + + + + E+ + G+ S S +I + F G+ + Sbjct: 130 VPHIAAGISHSPEILQMTEEIKIAGLRDITSISQNRIPQLWDQFL-----RFHGDLYELT 184 Query: 176 PVLYGLNETRPSQDKDD-EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 Y + ETR + +D + T L+ G+Y +FT+ G Sbjct: 185 ETAYSICETRQTAYAEDGDVTFSVMVGSPVPDFSNLPETLAQTTLRPGKYAVFTHRGSLE 244 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +YGT +P D E Y + +L IP+ Sbjct: 245 KLLQTYQYIYGTWLPSSGQRLDDRDDFEVYER---KVLAMQDPENEVKLYIPV 294 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 110/296 (37%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E ++ + + L+ V+ A S +H QRMF + + YIR RR+S Sbjct: 7 MEWIERLNSAVNYIEKNIRETIDLEEVSKIACCSTYHFQRMFAYIADIPLSEYIRRRRMS 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI--RPPL 118 +AV L+ ++DI+L+Y +DS F RAFK P+ + + Sbjct: 67 LAAVDLQSGNEKVIDISLKYGYDSPTAFNRAFKSVHGIAPSRAKEEGTILKAFPPISFKI 126 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQ----SYSCSLEQISDFRHEMRYQ-FWHDFLGNAPT 173 + ++ + ++G+++ + E + Sbjct: 127 TIRGDIEMNYRIEKKDSFRIVGISEPLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDG 186 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 IP L G++ S + D + A +Q + ++ + +F+ +G Sbjct: 187 IPMGLLGVS----SCNNLDNWRYYIAVASSQPIEN----GLEEYIVPSSLWAIFSGKGTA 238 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE + +P DIE Y P + E+ IP+ + Sbjct: 239 KSMQELEKRIITEWLPTSGYEYGNAPDIEVYLK-------ADPEDTEYEVWIPVLK 287 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 116/297 (39%), Gaps = 29/297 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + L ++E LD+ + +A A S++H RMF ++G ++ YIR RRL+ Sbjct: 1 MDWLERMNNALEYIENSLDEDIDYKKIAKAASCSEFHFSRMFSSISGVSLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A ++ I+D+A++Y + S F+RAFKK TP+ R + + Sbjct: 61 LAAFEIQKGDIRIIDVAIKYGYVSSDAFSRAFKKMHGITPSNARNKGVQLKAFPKISFQI 120 Query: 119 RLGEFTMPEHKFVTLE-DTPLIGVTQSYSCS--LEQISDFRHEMRYQFWHDFLGNAPTIP 175 + T E++ L+ + ++G ++S S ++I + + + L + Sbjct: 121 SIKGDTEMEYRIENLDFELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWED 180 Query: 176 PV-----LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 P L G+ + ++ Y + D +++ + +F Sbjct: 181 PKCKLESLLGVCGKDAAITDEE---FSYFMGVRYD--GEVPTDMETLVIPVSTWAVFP-- 233 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +Y +P IE YY + EL +P+ Sbjct: 234 ----NIVDAWKRLYSEWVPTSKYELANLPCIECYYGPKHKPRH--------ELWVPV 278 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 107/296 (36%), Gaps = 18/296 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + L ++E HLD+ L + +A AG SK+H R F+ G + ++ RL ++ Sbjct: 11 YARRVERTLAFIEAHLDEALPVARLAEVAGLSKFHFHRQFRAHVGVPVARFVARLRLRRA 70 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL--- 118 A L + +LD+AL FDS + F RAF+ Q+P +RR+P+W + + L Sbjct: 71 AQQLAFSPELRVLDVALSAGFDSPEAFARAFRAVQGQSPTAFRRAPDWPRWHAQFELPRA 130 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 TL+ P+ + + + R+ W AP Sbjct: 131 LHHSHAAMSDAATPILRTLDPIPVAALEHRGPPA----TLMASVQRFIAWRRGSQAAPEP 186 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQD---QADGYVLTGHPVMLQGGEYVMFTYEG 231 G+ P ++ LA+ A + GG Y + + G Sbjct: 187 STRTLGVLYDDPESVAPEDFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRG 246 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + E ++ +Y +P R + Y ++ +P+ Sbjct: 247 STDAIGETVMGLYRDWLPGSGERVRDAPLVFHYIER---VPRVAEHEQVTDVYLPL 299 >UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=Bacteria RepID=Q18AY3_CLOD6 Length = 288 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 111/299 (37%), Gaps = 23/299 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E +L+ + A A S +H QRMF + + YIR RR++ Sbjct: 1 MEWINKLNQAITYIEENLESGVDYAEAAKIACCSTFHFQRMFSYIAEVPLSEYIRRRRMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 K+A L+ + IL+++ +Y +DS +F RAF+ +P+ R + + Sbjct: 61 KAAFELQNSNIKILELSEKYGYDSPTSFNRAFQNIHNISPSAARAKGVVLKAYPKMTLSI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQ-FWHDFLGNAPT 173 + +++ V + ++G+ +S E++ + Sbjct: 121 YVKGNIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINN 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 P L G++ + + + Y A D+ + H ++ G + +F Sbjct: 181 EPCGLLGVS------VCTNSKGLDYYIAAPTDKP--VLEDTHEYLIPSGTWAVFECVSPM 232 Query: 234 TG---VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE + +P DIE Y + E+ IPI++ Sbjct: 233 PNALAIQELQKRIITEWLPSSGYVYANLPDIELYPN-----GDINAPDYTTEVWIPIQK 286 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 15/297 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++++E HL + +++VA AGYS +HL R F + G +IG+YI+ RRL+ Sbjct: 1 MDYRKALEHAVMYIENHLGSDIKVEDVAKAAGYSYYHLNRQFTAILGESIGSYIKKRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-- 118 +A + T R I+DIA++ F+S + F+RAFK + +P YR++ + + L Sbjct: 61 DAAKKILYTNRKIIDIAMENGFESPEAFSRAFKAIYKVSPQTYRQNRLDTFIAGKERLDS 120 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 L K V L + + G+ + ++ + + Sbjct: 121 GLLDHLARNVTVHPKIVELPEIKVAGLRGETTLRDNRLRELWDRANSLYIQ---IPNRIP 177 Query: 175 PPVLYGLNET---RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 +G+ E +D+ + G ++ GG Y +FT+ G Sbjct: 178 NGRAFGICEACAENTLYTMNDDILFTEVAGIEVSSFAGLTEPFVQKIIPGGRYAVFTHRG 237 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + ++GT +D E Y G + +L IPIR Sbjct: 238 TLGMLPQTFDYIWGTWFLTTKEEMDWREDFELYDER---FLGYDHPDSEVDLYIPIR 291 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 12/287 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + + ++ +LD L D +A A S +H R++ G A R RL + Sbjct: 5 NYQDRLDRVTSYIHDNLDGELDFDRIAEVASLSPYHWHRIYHACRGETAVATTRRLRLQR 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 ++V+L T PI IA + + S FTRAF + PA YR + F RP Sbjct: 65 ASVSLAQTDDPIAQIATKAGYASPAAFTRAFADAYGLPPATYRERGSHADF--RPGQLAT 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + + + P + + +I + Q G P + + Sbjct: 123 QQGGWSIEIQRFDAIPAFAI--RHDGPYIEIGKAFGMLFGQLAAR--GALPERI-EMIAV 177 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P+ + F ALA + + GG+Y + ++G + Sbjct: 178 YLDDPTAVPLERLRSF--AALAAPGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYN 235 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++GT +P + +E+Y ++ +P +L +L +P+R Sbjct: 236 WLFGTWLPQSDREADDRPVVEKYL---NSPQDTKPSDLLTDLCLPLR 279 >UniRef50_C1I964 Transcription activator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I964_9CLOT Length = 286 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 127/299 (42%), Gaps = 24/299 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E H+ + ++ ++VA S +H R+F +TG YIR RRLS Sbjct: 1 MNYIQSIQKSIDYMENHILEDINYEDVARHVYMSNYHFHRLFSMITGITANEYIRKRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPL 118 + + ++ +LDI+L+Y +DS ++F++AF + TP + RRS + + Sbjct: 61 MAGQEISMSDAKVLDISLKYGYDSPESFSKAFMRFHGVTPNIARRSGMKLKSFNSLVIKI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN-------A 171 L T+ ++K V E L+ + + +E IS+ +E FW++ N + Sbjct: 121 SLEGGTVMDYKIVKKESFKLLVKVKEFR--VESISEDNNEDIPNFWNECAENGVFDVLKS 178 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 T +YG+ + + Y A+ D D + + +F G Sbjct: 179 NTTNHDIYGVC----KPISKESKYFDYGIAMKYDGGD-VPEGYKVWDVHPTLWGVFKCVG 233 Query: 232 -LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + E ++ +P + T D E Y + + CE+ IP+ + Sbjct: 234 ENGDCIGEMWNRIFNEFLPSSDYTMLDDIDFEFYKEDNNT-------DCFCEIWIPVEK 285 >UniRef50_B8I706 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I706_CLOCE Length = 284 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 106/291 (36%), Gaps = 10/291 (3%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L +S + A A S +H QRMF +T + YIR RRL+ Sbjct: 1 MDWLNRMNKAIDYIESNLADKISYNKAAQIACCSTYHFQRMFSSITDVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ + ++D+A +Y ++S + F+RAFKK P R + + Sbjct: 61 LAAFELQTSDIKVIDVAFKYGYESPEAFSRAFKKLHGVMPTSARDIGISLKAFPKMTFSI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + T ++ E + GV S E+ D + D +A Sbjct: 121 SIKGDTEMNYRIEQREAFNVFGVYTEISTDQEKAFDQVPLFFKRCDDDGTTDAINNLLGR 180 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 + N T + E Y + +++ + +F Q Sbjct: 181 FDDNYTISALYDYSETTFKYMLCNYLPKDLSIPSRFTTLVVPPSTWAIFDV--PECETQS 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 ++ P +G E YY + N CE+ IP+++ Sbjct: 239 IWKRIFTEWFPTSEFEAIEGIQFEMYY------GLAKHKNGFCEIWIPVKK 283 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 116/293 (39%), Gaps = 17/293 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + +R +L ++ HLD+ LS++ +AA A +S+ H QR F + G + AY++ R+ + Sbjct: 10 NYHARMRRVLDHIDAHLDEDLSVEVLAAVAAFSRHHFQRQFSGLYGIGVAAYVQLARMKR 69 Query: 62 SAVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG------I 114 ++ L + +L IAL ++ + F+RAF++ F Q+P+ +RR+P W + + Sbjct: 70 ASYRLAFRDQDGVLGIALDSGYEGPEAFSRAFRRLFDQSPSSFRRAPRWEPWHAAQSPLV 129 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + + FT + + V DTP+ + +L R+ W G P + Sbjct: 130 QARRQTMTFTDDDVRIVDFPDTPVAVMRHEGDPALLG----DTIRRFIAWRRAAGLPPRV 185 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 + + P ++ + A A + ++ GG + G Sbjct: 186 SA-TFNVFHDDPDDTPAEQYRLDLCAATA--RVASNPDGVTSGVIPGGPCAVLRQIGSSD 242 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ +YG +P R +L +P+ Sbjct: 243 DLRAASRFLYGEWLPRSGRELRDAPFF---AQRVSFFPDVPEHEAVTDLFLPL 292 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 12/279 (4%) Query: 10 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLT 69 ++ ++ + LSLD +A A S++H R+F +TG + +R R+ ++A L T Sbjct: 1 MIDYIYSNPSADLSLDCLADVAAMSRFHWHRVFSALTGESCAQIVRRVRMHRAAFWLVQT 60 Query: 70 ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129 P+ IA + +++ Q+FTRAF++ F P R + +R + G+ M K Sbjct: 61 EWPLAKIAREVGYNNTQSFTRAFREVFDAKPLEIRAAQAQHVLTLR--CKEGDEDMYGVK 118 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 + L + + + +S ++ F + + + G+ PS Sbjct: 119 VEDAPERRLAAMA--HVGAYNGVSKSYEKVAAVF---TIRDLWKHARGMVGIYYDDPSTV 173 Query: 190 KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMP 249 + E + LA D V+++G E + +G TG+QE +YG +P Sbjct: 174 PEAELRSYAAVELADDVV--VPDPLEEVLIRGDESAVLVMKGAYTGLQEAYEWLYGQWLP 231 Query: 250 MLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L E Y ++ P +L ++ +P++ Sbjct: 232 QSGLMPADQPSYEIYL---NSPMDTAPADLLTQIYVPLQ 267 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 19/291 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + L ++E H + L+LD +A S++HL R F+ TG ++ Y+R RRLS++ Sbjct: 4 HMNPVGKALWFIESHFARELTLDEIANCGCVSRFHLARAFEAATGFSVMRYVRGRRLSEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L A IL +A+ + S + FTRAF++QF TP R + P+++ E Sbjct: 64 ARRLASGAPDILAVAIDAGYGSHEAFTRAFREQFGLTPDALRARGHLDNLALVEPIKMDE 123 Query: 123 FTMPE---HKFVTLEDTPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAP-TIPPV 177 + +F + + G+ + Y+ I Q + D+ G P + V Sbjct: 124 TLLTRLEPPRFEDGKAFLVAGLNERYTNETCAAIPSQW-----QRFGDYFGKVPGQVGNV 178 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 YG+ + DD + Y + + + Y +F++ + ++ Sbjct: 179 AYGVCY-----NADDNGNIDYLCGVEVSDFSALPAELSRLRISPQRYAVFSHREHVSTIR 233 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 T++ +P + ERY D +G E+ +P++ Sbjct: 234 RTWNTIWNQWLPASGHIPADAPNFERYDAKFDPVSGMGG----LEIWLPLK 280 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 104/299 (34%), Gaps = 20/299 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ L+ ++ HL++PL L +A AG S++HL R++ + G +I I+ RL K+ Sbjct: 11 YESRLQKLIDYIYDHLNEPLDLMTMADVAGISQYHLHRIYTSIYGESISNMIKRLRLHKA 70 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS---AFGIRPPLR 119 A L T I A + Q+FTRAF +F PA +R+ + P + Sbjct: 71 AGNLINTDMSINQAASLSGYRHLQSFTRAFSAEFGTPPASFRQQRRNLGAEPMTLLTPYK 130 Query: 120 LGEFT----------MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 169 + L DTP+ V + S I ++ + Sbjct: 131 VAREKRNMQDANVNSTFSVSISQL-DTPIHMVVYPHQGSYMNIGQAFEKLSGWA---GMR 186 Query: 170 NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 + + P + E L ++ +Q G Y + Y Sbjct: 187 QLFDQTTRMMAVYFHDPDNTPEAELRSLAGITLTPEKVPNLEAPLEHYDIQSGNYAVLRY 246 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +G + +GT + E Y + P +L ++ +P++ Sbjct: 247 KGPYADMHRAYKWFFGTWLAESGYEVADQPPFEEYL---NDPRQVAPNDLLTDIYMPLK 302 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 17/292 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ ++ +LD+ L +A A S H R+++ G +I A ++ RL ++ Sbjct: 16 YIRRFTRVIEYIYANLDEDPDLATLAEVAALSPSHWHRIWQATYGESIFATVKRLRLHRA 75 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI-----RPP 117 A L T + +A + + S + F+R+FK+ + Q P YR S F P Sbjct: 76 AGDLTYTDLALPVVAKRAGYGSLEAFSRSFKQAYGQAPGTYRTSLTSHRFQPANGGAPLP 135 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF-WHDFLGNAPTIPP 176 + G M + TL L + + +I ++ +G + Sbjct: 136 KQKGPALMHDVAIKTLPSETLAVLPHR--GAYMEIGKAFEKLFGILVSRQVIGQIGAMKA 193 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 L + P+ +D+ + +GG+Y + Y+G + Sbjct: 194 ----LYYSDPTHVAEDDLQS--AAGAVIGDGFPVEAPLETRETRGGDYAVLRYKGPYADM 247 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +YG + +E Y + P +L ++ +P++ Sbjct: 248 KWAYEWLYGEWLTQSGREPDDAPCLEVYL---NNPRDTAPADLLTDICLPLK 296 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 117/292 (40%), Gaps = 25/292 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I+++++++ GHL + L+ D +++ +G SK+H +R+F+ TG IG+YI+ R+ Sbjct: 105 HHKMIQNIIVYINGHLTEVLNTDTLSSMSGLSKFHFRRVFRTATGENIGSYIQRLRMEHV 164 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + I Q + ++ + +AFKK F + + YR + ++ Sbjct: 165 AHLLISTDYTLKQIIEQTSYQTKYSIAKAFKKHFGISTSQYREKHRPNGENPATNIK--- 221 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP-----V 177 PE K ++ I V ++Y L+ W+ L +A Sbjct: 222 ---PEIKVISPIKIFCIEVGEAYKNKLKY---------RLLWNKLLHHAEQYEADPRYDK 269 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 L+ PS ++ + L D V + GG Y +F + G + + Sbjct: 270 FISLSMDDPSITPTEKCRFYLGITLRDDTKARPVPGIMQ--IPGGRYAVFRHTGSYSSLH 327 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + ++Y P + E Y + + L E+ IP+ R Sbjct: 328 KVYRSIYEEWFPKSKYHPQSTFSFEMY---MNHPSTTETSELLTEIYIPVIR 376 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 102/286 (35%), Gaps = 12/286 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + + +LD PL+LD++A A S++H R ++ +TG + +R RL + Sbjct: 9 DYRERLERVRKHIHENLDGPLNLDDLADIACLSRFHWHRTYRGLTGETVWQTVRRLRLHR 68 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L I I + + + + F++AFK + P YR + P Sbjct: 69 AAAELANGTLAIEQIVARSGYTNSRAFSQAFKADYGLPPFRYRAEGGHRRY--ENPEWQE 126 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 TM + + + L+G ++ +I + + L + Y Sbjct: 127 SDTMYDVRIEEMGPAKLVG--FEHTGPYTEIGSAFEKFYAEVGPANLASQAMAIAAAY-- 182 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 + P +E ++ + G Y + ++G + + Sbjct: 183 -FSDPDITAPEECRSLAGMIVSP--GLDVAGGFDRFDILAGRYAVLQHKGAYAELPKAYQ 239 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 YG + + +E+Y ++ P L E+ +P+ Sbjct: 240 WFYGAWLADSGESAAAAPAVEKYL---NSPMNTAPAELVTEICMPL 282 >UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EC6 Length = 292 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 115/297 (38%), Gaps = 14/297 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ A I++ + ++E ++ + L +++AA+A S ++ Q++F + +G YIR RRL+ Sbjct: 1 MNWAEGIQNAINYIENNITEELDNNSIAAQACCSSYYFQKIFSLLCDMTLGEYIRNRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP--L 118 + L T ++DIA++Y + + ++FTRAF +P+ R++ R L Sbjct: 61 LAGSELISTDIKVIDIAMKYGYSTPESFTRAFTLFHGVSPSEARKNASSLRSFSRLTVEL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ-----ISDFRHEMRYQFWHDFLGNAPT 173 L ++ + +I + + + D + L + Sbjct: 121 SLKGGKTMNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMAS 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 +YG+ + D++ Y+ A + + ++ +G Sbjct: 181 DREFIYGICYGNGKETYDED-TFEYSIAAICAEDTVAPEGFRISHIPARTWLAVECQGTC 239 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 VQ+ + + P T DIE Y + + E+ +P+ + Sbjct: 240 PETVQQQWREMCASFFPSSGYTPTYEMDIEVY-----PSGDPSAPDYKFEIWVPVVK 291 >UniRef50_C6PTW1 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTW1_9CLOT Length = 286 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 19/296 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E ++ + ++ VA A S +H QRM+ +TG +G YIR RRL+ Sbjct: 1 MDWLNAMNKAVEYVEANITNKIDIEEVAKIALSSTFHFQRMYHMITGITVGEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 + + I++I+ +Y +++ + FT+AF+K + +P R S + L Sbjct: 61 LAVQDIISGE-KIINISHKYGYETPEAFTKAFRKMYGVSPTAARESGVNLKAYPKLSFHL 119 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWHDFLGNAPTI 174 + ++ E ++G S + Q+ F + + ++ ++ Sbjct: 120 SIKGDKDMNYRIFDKESFMVVGKQAKISMIDEQNFSQVPKFWRGCMKEGSYQWM-SSKAG 178 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 + G+++ + E Y A+ + + F G Sbjct: 179 KLGILGISKDFDKY----KDEFNYMMAIE-KIQSTIPKGYVSANIPAATWAAFEAVGPVP 233 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + + + +Y MP + D+E Y N CE+ IPI++ Sbjct: 234 EVLHDLLRRIYSEWMPSMGYQHDCAPDLEIY-----PIGDMFSRNYSCEIWIPIKK 284 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 58/288 (20%), Positives = 113/288 (39%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ +++ +L + + L +A A S +H R+FK V +G Y++ RL ++ Sbjct: 50 YLKPVNQVVDYIQSNLQEKIELTTLANLANISHFHFHRIFKSVMNENVGEYVQRVRLERA 109 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L+ T + +IA Q + +Q ++AFKK F +P+ YR P + P+R E Sbjct: 110 AFKLQTTNLNLTEIAEQVGYQTQFALSKAFKKYFNISPSTYRSMPT----DLTIPVRREE 165 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + P+ V + + I F + G P + + Sbjct: 166 CGISDIRQDIRVIEPVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGIPDGETEYFTFS 225 Query: 183 ETRPS-QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P+ ++Q + ++GGEY +FT G + + Sbjct: 226 RDVPTIITSPEQQR--IFVCVNNSDHLEPSGIIGVQTIEGGEYAVFTMYGAYRQLPDVYT 283 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y + + R E+Y + D D+ L E+ IP+ + Sbjct: 284 YIYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDK---LMTEIYIPVSK 328 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 109/294 (37%), Gaps = 16/294 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ ++D+L +E L++ LS+D +A S++H R+F G + IR RL Sbjct: 25 LNLNDRLQDVLANIESSLEEDLSVDQLAQLTHVSRFHFHRLFSATFGLGVMTLIRRLRLK 84 Query: 61 KSAVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--- 116 ++A L I +I +DS + F RAF+K F P+ +RRSP++S + Sbjct: 85 RAAFRLAYRAGDSITNIGYDCGYDSPEAFNRAFRKHFGLAPSDFRRSPDFSVWAQHYDPI 144 Query: 117 ---PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 + +P+ + + PL + + + + W G +P+ Sbjct: 145 QTLRNQHMPAPLPDVTVIEMPAIPLAVMPHRGNPA----RLSHTLQAFIAWRKRNGLSPS 200 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + L P++ DD+ + + + + G Y +G Sbjct: 201 H-SRTFNLVYDDPNEVTDDDYRFDLACEIQGELPADF-EGMESRTIPAGRYARARLQGSD 258 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + ++Y +P D + + ++ +P+ Sbjct: 259 DALERLVHSLYAEWLPSSGYDLA---DFPLLFERVRFFPDVSEHEMITDVYLPL 309 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 125/294 (42%), Gaps = 17/294 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ +LD+PL++ +A + +S+W LQR+F++ T H + Y+R ++LS++ Sbjct: 9 HLNRVEKIVDYIHQNLDKPLTVTELADISCWSRWQLQRVFQEQTNHNLAQYVREQKLSRA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR----RSPEWSAFGIRPPL 118 A L + + + DIAL + F+S+ +F+RAFK+ FA +P YR + + P L Sbjct: 69 AEQLLKSDQKVTDIALDFGFNSEVSFSRAFKQLFAISPRQYRLVGKLNGIRLPLVMSPEL 128 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF----LGNAPTI 174 L + + + +T GV F ++ W F L ++ Sbjct: 129 PLAQAATQVVRIESKPETQFWGVYGPIDSIYAANPQFSQQVL-DIWGTFTQIALQHSIAP 187 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 YG+ + + ++ Y A + + A + V + Y + T+ G Sbjct: 188 NHFYYGIVD---TVRVLPNSQLVYWAA-SDNPAFSQISQLEHVTIPAQMYAVITHVGPAA 243 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + V + +P +G ++E Y + E +PI+ Sbjct: 244 TFPKTLEWVLQSWLPSSGYMGLEGFELECY----PRDYQLESHEAKMEFWLPIQ 293 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 240 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 106/287 (36%), Gaps = 11/287 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I + ++ GHLD + + +A A S +H R+FK + G + A+I R+ Sbjct: 8 DYTQRINKVAEYINGHLDTSIKIKTLANVANLSDFHFCRIFKALKGESPIAFIARLRIET 67 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A LR + + +IA +++ + ++AFK Q+ TP YR + + ++ + Sbjct: 68 AAQLLRYSTLSVEEIAFNIGYETPASLSKAFKNQYGITPTQYRTN--RDIYIMKKEINNP 125 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 E + K V LE LI V + + ++ T + Sbjct: 126 EVVLKAPKIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQ---KLFTKGIESICV 182 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 + P + Q +LA + L GG+Y +F Y+G T + Sbjct: 183 SYDDPKITEASLQRSE--VSLAIHKPAKPSGEVSCKTLAGGKYAVFFYQGSYTQLSSVYD 240 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + R E+Y L+ E+ IP++ Sbjct: 241 AA-MRWVVDSEYEVRDEPMFEKYLNDC---RRTPEGKLKTEIYIPVQ 283 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 15/288 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I + ++E H + +SLD++AA AG S++HL R+F G +I AYIR RRLS +A+ Sbjct: 2 SAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAAL 61 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 L IL++AL+ + S + FTRAF++QF TP R+ + P+R+ + Sbjct: 62 DLANGTSGILEVALEAGYGSHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTR 121 Query: 125 MPE---HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + +F L G+ ++Y + R E W F IP Sbjct: 122 TLKIEPPRFEESPGLLLAGLAETYDYN-------RTEGIPSLWQRFSAYFGNIPGQRGNT 174 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 +Q + Y A + + L Y +F + G + + Sbjct: 175 AYGVCTQSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAH 234 Query: 242 TVYGTCMPMLNLTRRKGQDI-ERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ T P + D+ ERY D +G E+ +P++ Sbjct: 235 HIFKTWFPESGYRHGEMPDLMERYDERFDPHSGMG----AVEMWVPLK 278 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 108/300 (36%), Gaps = 21/300 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + + ++E +L + D VA KA S +H QRMF +T + YIR RRL+ Sbjct: 1 MNWLDKMNEAICYVEDNLAGEIDFDEVARKACCSTYHFQRMFSFITEVPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ ++ ++++A +Y ++S FTRAF+ TP R R + Sbjct: 61 LAAFELQNSSVKVIELAFKYGYESPDAFTRAFQNLHGVTPTSARDMGVQLKAYPRISFHI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGV----TQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + ++ E + G+ ++ ++I +F + + + A Sbjct: 121 SIKGDVEMNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADD 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 + +++ Y Q G + + + +F E Sbjct: 181 GKQ--NMMLNAAMYGHENDGTYHYMLCHRIPQK-GIPEGFVQLDIPKLTWAIFPTEEHTE 237 Query: 235 G-----VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 VQ +Y P + E YY D K E+ IP+ + Sbjct: 238 DKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYKVGDNK-------YIVEIWIPVYK 290 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 8/293 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II +I++E +L +PL++++VA+ YS +H R F+ V G IG+YIR+RRL+ Sbjct: 1 MKDKQIIGRAIIFIETNLYEPLTVESVASAVSYSYYHFHRYFQVVMGETIGSYIRSRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L + + ILDIA+ F+S ++FTRAFKK++ TP YR + G P+++ Sbjct: 61 QAAYNLVHSKKRILDIAILLYFESAESFTRAFKKRYGITPMEYRENGIDVLIGNHNPMQI 120 Query: 121 GEFTM-----PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + T + + VT + ++G S + ++ Q + Sbjct: 121 DKITESNYANLQPEIVTFQPKCVVGFRYYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNR 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 +Y + T + E + + + GG+Y F ++G Sbjct: 181 YSIYETSGTCLQNTFNKNSETTLFIGIETSDDNNIPEGMELKEISGGKYAKFVHKGTVKN 240 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++G P + D+E Y + G + E+ PI+ Sbjct: 241 LISTYHYIWGVWFPNSSFQLDDRDDLECY---TEKFLGAEDEESQIEIYFPIQ 290 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 239 bits (610), Expect = 9e-62, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 109/289 (37%), Gaps = 23/289 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ HLD+ + + +A AG S H R+F+ +TG ++ ++R RL ++ Sbjct: 7 WGQRILRVVDHVQAHLDEDVDPETLADIAGLSLHHFHRVFRGLTGESVMGFVRRLRLERA 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L+L P+ +AL+ + S + FTRAF+ +F P YR E Sbjct: 67 AMQLKLGEAPVTQVALEAGYGSHEAFTRAFRNRFGVPPRAYREQTRVEV----------E 116 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL--YG 180 +P + IG+ ++ S + E+ A +P VL G Sbjct: 117 VGVPRVELRDDPALTCIGL--RHTGSYSECGQTWGELMAHA-----AKAGWMPHVLGSVG 169 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYV-LTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 L P + + +A L G Y + + G + E Sbjct: 170 LAYDDPDITAAERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILET 229 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + G +P + IERY D A LR E+ + I Sbjct: 230 YVGLIGRALPFRGVELANEPVIERYL---DDPATVPLHELRTEICVRIE 275 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 120/291 (41%), Gaps = 15/291 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q ++++ ++ HLD+ L+L +++ S++H R+F TG + YI RL ++ Sbjct: 9 QLNRVKEVCSYIGQHLDEELNLTHLSQVGLLSRFHFHRLFLAATGMQLNRYILLLRLKRA 68 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPLR 119 + L + R ILDI ++ FDS + F+RAFK+ F Q+P+ +R +P+W + + Sbjct: 69 SFRLAFESKRKILDIGIEAGFDSAEAFSRAFKRTFQQSPSQFRSNPDWPHWHSVMTLVNP 128 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIPPV 177 + + K + L + + S + + E QF W G +P Sbjct: 129 PQGDIIVDVKLIELPIQKVAQLEHSGA------PEKLMETAKQFIEWRKTTGLSPVAISR 182 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 YG+ P+ ++ + ++ + D L GG Y + +EG ++ Sbjct: 183 TYGVPNGDPNTMAAEDFRFRFCGSVNEAVPDNE-YGVVTGTLAGGCYAVIRHEGSHDAME 241 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 I + +P R Y + +L ++ +P+ Sbjct: 242 SSIYGFFREWLPQSGKAMRDEPLFFHYL---NFIHQVDECDLLTDIYLPLE 289 >UniRef50_A8G9B3 Transcriptional regulator, AraC family n=1 Tax=Serratia proteamaculans 568 RepID=A8G9B3_SERP5 Length = 292 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 131/288 (45%), Positives = 178/288 (61%), Gaps = 5/288 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +I LL W+E +LDQPL+LD++AAK+GYSKWHLQR+FK++TG +G Y R RRL+ Sbjct: 1 MYQQQVITALLAWIEQNLDQPLTLDDIAAKSGYSKWHLQRLFKELTGEILGTYARRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A LRLT + IA +Y+FDSQQTFTR FKKQF PA YRRS +WS G++PPLRL Sbjct: 61 AAARELRLTNHGVAFIADKYQFDSQQTFTRCFKKQFGMPPAGYRRSTDWSGLGMQPPLRL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + +P+ + +TL LIG TQ SC+L Q+ ++E+R W + V+YG Sbjct: 121 MDAPLPQAEIITLPAMQLIGHTQHRSCTLGQLLHSKNELRQHAWRQMMPKEAETLAVVYG 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L Q + YT ALA ++A+G V+++ G+Y FTY+G +Q FI Sbjct: 181 LTSLEADSRLRGRQRMAYTLALADERAEG-----ERVLIEQGDYASFTYQGQVEELQNFI 235 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y T +PM+ RR G+DIER+YPA +RCE LIPIR Sbjct: 236 ARLYDTAIPMMKAIRRPGKDIERFYPALGGVCCAGGTAIRCEYLIPIR 283 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 20/292 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L +E LD L L+ +A+ +G S++ L R+F TG ++ Y++ARRLS Sbjct: 1 MD---PVNKALWLIETELDTALDLERLASVSGLSRFTLSRVFAGATGWSVMRYVKARRLS 57 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L A IL++AL + S + FTRAF+ F TP R S + + +R LR+ Sbjct: 58 CAAHRLAKGAPDILEVALAVGYGSHEAFTRAFRDHFGITPETLRASGDLNGIELREALRM 117 Query: 121 ---GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP-TIPP 176 + + +FV E+ ++G+++ ++ Q +Q + ++G P Sbjct: 118 HATTGYALSAPRFVDAEELLIVGLSERFNVETAQ----GIAALWQRFGPYIGRIPGQQGS 173 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 +G+ + +D+ Y + ++A L Y +F +EG + + Sbjct: 174 ETFGVC-----CNPEDDGSFEYIAGVLVNRAAEVPAGLTLQRLAAHRYAVFLHEGHISSI 228 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 E ++ +P + + ERY D AG R E+ +P+R Sbjct: 229 HETFNAIFQHWLPTAGVQTAAAPEFERYSEDFDPMAGTG----RVEIWVPLR 276 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 21/299 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ + ++E +L +S+ +++K+ +S +H QR+F+ +TG ++ YIR RRLS Sbjct: 1 MDYYERIQHSIEFIEENLQNNISIKEISSKSCFSAFHFQRLFQAITGFSVQEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L+ T + +L IA+ +++ SQ+ FTRAF + F TP +R+ + Sbjct: 61 EAARLLKETKQNVLHIAIAFQYGSQEAFTRAFVQFFGVTPGRFRKEGVMLKKQNKMDFLA 120 Query: 121 ------GEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWHDFLGN 170 E M + L + +IG + I F + + ++ + Sbjct: 121 YQSKLDSELNMNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYMDFGKKEYYQQIQK 180 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD-GYVLTGHPVMLQGGEYVMFTY 229 P + YG++ D+ + + D +++ G+Y F Sbjct: 181 -KIAPHMAYGIS-----TSFQDDGHFSFVVGEEVEDFDLELNEGFVKIVIPEGKYAEFKV 234 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G VQ +YG+ +P N R G D E D + P +++ ++ IPI+ Sbjct: 235 SGSHEMVQNTRRYIYGSWLPNSNYERTSGPDFEI----TDVLHSNGPNDIKMKIYIPIK 289 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 16/295 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + + ++E HL++ + L+ V+ + GYS +++ R+F V G ++G YI RRL Sbjct: 1 MKRYPPLERAITYIEAHLNEYIGLNEVSRETGYSYYYMTRLFSSVLGESVGHYINRRRLY 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-- 118 ++ L + + ++DIAL ++S + F+RAFK F +P YR++ + L Sbjct: 61 NASEKLIHSDQKVIDIALDCGYESSEAFSRAFKAVFGYSPVAYRKAGLDLVIKAKKELAP 120 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + K + L +T + G+ + S S Q+ + F +A Sbjct: 121 EDVCHIANHISHAPKIILLGETEVAGLRGTTSLSDNQLPGLWEQFHGLNKDFFTTSAG-- 178 Query: 175 PPVLYGLNETRPS-QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 YG+ ET+ + KD + D L L+ G Y +FT+ G Sbjct: 179 ----YGICETQKTAYTKDGDALYSVMIGGPVKDFDCLPLELAKKTLRAGRYAVFTHRGTL 234 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + ++GT + +D E Y + ++ IPI+ Sbjct: 235 GNLYKTYQYIFGTWLQTTREELDDREDFEVYEH---EILSFDDPDNEVKIFIPIK 286 >UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=Q24TQ4_DESHY Length = 305 Score = 237 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+ L + E HL + + + VA +A S +H QR+F + G ++G YIR RRL+ Sbjct: 15 MDWITGIQRSLDYTEAHLTEKIDYEMVAKQAYSSAFHFQRVFSILCGFSLGDYIRMRRLA 74 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE-WSAFGIRPPLR 119 ++A L T I+ IAL+Y +D+ ++F+RAF + TP RR S F + L Sbjct: 75 RAAEDLLCTDEKIIHIALKYGYDTPESFSRAFLRFHGITPTEARRGGTVKSFFRLSVKLI 134 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP---- 175 L + +++ + +I + + D E FW+ + Sbjct: 135 LSGGSTMDYRIEKKDAFKIICKKKQVNKPQ---GDSATEEISAFWNQCTKDGTMEDICKY 191 Query: 176 ------PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 + G+ + D Y + + + + + +F Sbjct: 192 GRFDGLGGVLGICFSGDMADAA----FPYGIGAEYNGVPLHGEGLEILEIPPYTFAVFQC 247 Query: 230 EGL-GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +G + + P N G ++E Y A CE+ I + Sbjct: 248 KGPMPEVFKTTYQRIVTEFFPQSNYQYGNGVELEVY-----PSADVSNPEYTCEIWIAV 301 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 237 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 113/288 (39%), Gaps = 10/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + ++ HLD L+++ + A +SK+H R F G + +++ RL ++ Sbjct: 7 YEKRMLAVCDYIYKHLDDDLTVEALCDVACFSKYHFHRQFTHFMGVGVFKFVQILRLKRA 66 Query: 63 AVALRLT-ARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP-LRL 120 + L T + I+DIA+ +FD ++F+RAFKK + Q+P+ +RR P+ G+ L Sbjct: 67 SYELVFTKEKRIIDIAMSAKFDHPESFSRAFKKAYLQSPSEFRRHPDLEKLGLHFHKLER 126 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 V + T + + S S ++ W G +P + Sbjct: 127 QLEPYMTVDIVHFDTTKIALLKHRGSPS----RIMESVAIFREWRKSSGLSPITKSRTFN 182 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + P+ ++ + ++ D + L GG Y + + G + + Sbjct: 183 IIYEDPAVVVAEDFRCDLAAEVMKEVDDNEYGVINS-TLAGGRYAVVRHFGPYDSISRCL 241 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +YG +P +Y+ + L ++ +P++ Sbjct: 242 YFLYGEWLPDSGEELGDAPCFFQYH---NHFPEVAEHELITDVYLPLK 286 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 237 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 79/299 (26%), Positives = 124/299 (41%), Gaps = 23/299 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E L + LSL+ +A +AG+S +H QR+F +TG + YIR RRLS Sbjct: 11 MEHYTRIQYAITFIEEQLQEALSLEAIAIRAGFSLYHFQRLFHAITGFTVQEYIRKRRLS 70 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-- 118 ++A LR+T +LDI++ Y++ SQ+ FTRAF F PA YR+ A + L Sbjct: 71 RAAEELRVTRHTVLDISVSYQYGSQEAFTRAFAGYFGMAPAQYRKHQPLLALRLPIDLVA 130 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFLGN 170 G TM + + T +IG + + E+I F + + N Sbjct: 131 LTANIRGGLTMYKPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGNHEYFMRIPN 190 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 P YG+ ++ + + L G+Y F Sbjct: 191 -KARPAFAYGIPH-----GYGEDGAFSFLIGEEVTSFAEVEEGFACLELPSGKYAAFR-N 243 Query: 231 GLGTGV-QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G + Q +YGT +P N R +G D E P + + IPIR Sbjct: 244 GTMPEIGQNAWKYIYGTWLPNSNYERGEGPDFEV-----TDVLNSTPQKISMTIYIPIR 297 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 16/291 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + ++E HL +S+ +AA + YS +H R+FK + G Y+R RRL+ +A Sbjct: 2 QRFFKSIEYIEQHLYDKISVHQIAAASHYSTYHYSRVFKALVGDTPKEYLRKRRLTMAAK 61 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR----- 119 L ILD+A+ +FDSQ+ FTRAFK F TPA YR+ E + + Sbjct: 62 RLLTEEVGILDLAMDCQFDSQEAFTRAFKALFNMTPAQYRKMNEPFRLLYKNQINEDDLS 121 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 L E + +T L+G+ Y+ + + D + N + Sbjct: 122 FLQNRISMEPEIITQPAIKLVGIANQYTDEDLSLPRLWSGFAP--YRDTIAN--RVGDEF 177 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 +G+ E+ ++ ++ Y + + + + Y FT++G ++E Sbjct: 178 FGIYESY--EEAEEGTTFVYICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEE 235 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + ++G+ +P + D E Y A D + L IP+R+ Sbjct: 236 TLRYIWGSWLPKSAYEYEEKPDFELY----PAGFNDADPENKLYLNIPVRK 282 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 111/292 (38%), Gaps = 19/292 (6%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I+ +L ++ HL +PL + +A +S +H R+ + +GAYI+ R+ Sbjct: 10 DYQTRIQKVLEYIRQHLSEPLDVARLAEIGNFSVFHFHRIIRAYLNEPLGAYIKRVRMET 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR-RSPEWSAFGIRPPLRL 120 +A L + PI D++ Q ++ +F+ AF+K F ++P +R + ++ + Sbjct: 70 AAQLLTYSHTPIHDLSYQMGYELPSSFSHAFRKYFGKSPQAFREQQQQFIKNQPQTTNTT 129 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL-----GNAPTIP 175 + K + L L+ S + + + + W + Sbjct: 130 LPGFVLTPKIIDLPAQQLL--------STRILGKYETSVIQKAWQKLMTYVFAQQLFYPT 181 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 ++G++ P D + LA+ A L G+Y MFTY+G Sbjct: 182 MEMFGISHDHPEIAGDILYQYEACVTLAKPVASE--GEFVVKTLPAGKYAMFTYQGSYAQ 239 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + V + + + R+ ++Y D L ++ +PI Sbjct: 240 LDTVYNLVLKQWLFNSSYSLREAPIFDQYLNTPDN---TPEEELLTKIFLPI 288 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 105/291 (36%), Gaps = 24/291 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ ++ HL++PL ++ +A + S++H R+ + + YI +R+ ++ Sbjct: 9 YLQQVNRVIDYINSHLNEPLRVETLAREVCLSEYHFHRIMRAYLHEPLATYIARQRVERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + L++ + +A +++ Q+ ++AFK+ F +P YR+ + Sbjct: 69 VMYLQMKNIRLAQVAEMVGYETPQSLSKAFKQFFGISPTAYRKRRAERY----EEFSTLK 124 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP-----TIPPV 177 + + +T + L+ + E + W T Sbjct: 125 KESLKPEILTEPELKLVYIRIIGRYG-------EEEPYIEAWRKLRDFLQINGLLTPSTR 177 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 G++ P+ K ++ + + D + + G Y ++T G +G+Q Sbjct: 178 WIGISFDDPTVTKTEQCRFYACATVEHDVS--PQGAFGMKTIPQGRYAVYTLRGSYSGLQ 235 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 E +Y +P R E Y E + + IPI Sbjct: 236 EMYDRIYSHPLPTA---FRDATSFEEYLNCEP---DTEEKDYVTRIYIPIE 280 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 121/290 (41%), Gaps = 13/290 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++E HLD+ L++ ++ +A +S++H QR++ +TG ++ +I+ RL K+ Sbjct: 9 YVEQINKVQDYIENHLDESLTVKRLSQRANFSEYHFQRIYGSMTGESLYGFIKRIRLEKA 68 Query: 63 AV-ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP--EWSAFGIRPPLR 119 A L RPI+DIA+ F +Q +F +AFK ++ + YR++ + L Sbjct: 69 AHILLFDKDRPIIDIAMSVGFSNQTSFAKAFKSKYGVCSSSYRKTNGTVSETDFVNKYLD 128 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDFLGNAPTIPPV 177 + T+ K + + + Y+ ++ S+ + + W D + Sbjct: 129 NQDMTIDPLKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLISST-SR 187 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + + ++ +D+ + ++ D+ + L G+Y + ++ + Sbjct: 188 WFVIYHDFGNETDEDQLRLSVCMSV--DRNLAVSGDIGILNLHEGQYAVGSFMVEPSEYD 245 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +YG +P +E Y K ++ E+ IPI Sbjct: 246 KAWYYMYGKWLPTSGHKPDDRFSLEHY-----PKVEEQGDKRLVEIYIPI 290 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 122/294 (41%), Gaps = 16/294 (5%) Query: 2 DQAGIIRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 + I ++ ++E HL ++ + L+++A+ YS++HL RMF V G + Y+ RRL+ Sbjct: 21 NNIEEIAAVIDYIEEHLMEEKMDLESIASIFHYSRYHLHRMFASVAGFPLHTYLTRRRLT 80 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL-- 118 ++A L T RP+L+IAL +++Q++F+RAF+K F +P+ YR+ ++ ++ + Sbjct: 81 EAARLLVWTDRPVLEIALASGYETQRSFSRAFQKYFQHSPSRYRKKGDFFPLQLKYDVFR 140 Query: 119 --RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 +L + ++ ++G S I + + T Sbjct: 141 REKLRGDRIITVTMREAKELSVVGYCSSTKGGFAGIGRCWRRFHAKKDR---ISGCTNKE 197 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTG 235 L G+N+ K +Q Y Q L G V+F++ G Sbjct: 198 FLIGINDYSYYPCKGLDQVFRYIAGAEVMQEYTAPKGMQKFTLPAGRCVVFSFRGRNEDS 257 Query: 236 VQEFILTVYGTCMPMLNLTRRK--GQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q + +YG P + D RY D +L +P+ Sbjct: 258 LQPVVEYIYGEWFPDSTCRFDEDRRYDFARYGEQLDE-----HGESEIQLWVPV 306 >UniRef50_C2LM40 Right origin-binding protein n=2 Tax=Proteus mirabilis RepID=C2LM40_PROMI Length = 298 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 161/299 (53%), Gaps = 14/299 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q +++D+++W+E +LD LSLD +A K+GY+KWH QR+FK TG ++G Y+ ARRLS Sbjct: 1 MLQENVVKDIIVWIEQNLDSRLSLDIIAEKSGYTKWHFQRLFKAYTGISLGKYVLARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 A ALR+T +LDI+L+Y FDSQQTF RAFKKQF TP+ YR+ W + P Sbjct: 61 CGAYALRITRSSLLDISLKYHFDSQQTFCRAFKKQFNITPSEYRKKQGWDISELIFPALE 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +++ +TL LIG+ Y+ ++ + + + R +FW FL TIP +Y Sbjct: 121 TVELKAKYEVMTLPSKELIGMAHQYNKNISAWNYDKKKFRKEFWKKFLKEIHTIPTEMYA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQ--ADGYVLTGHPVMLQGGEYVMFTYE-----GLG 233 + S D+ YTTA++++Q + + T V L G+Y++ T+E Sbjct: 181 THR--ASAGSLDDTTYIYTTAVSKEQLTSSANISTMSNVELPNGKYLVITFEMDNILDSL 238 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAG-----DRPINLRCELLIPI 287 TG + I TVY +P +NL RR G DIERY + IP+ Sbjct: 239 TGYDDIIYTVYTKVLPKMNLLRRAGPDIERYTLKQSVSYDKLIGHSEQHLQEISYYIPV 297 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 108/301 (35%), Gaps = 19/301 (6%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I + ++E HL +PLSLD ++ AG+SK+H R+FK + + Y+ +L Sbjct: 9 EYLNRICKVQDYIEEHLHEPLSLDELSNIAGFSKFHFHRIFKAIEKETLAQYVNRLKLEN 68 Query: 62 S-AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI------ 114 + A + T + DIA + F F+RAFK + +P YR + + Sbjct: 69 ATAFLIHRTDMTVTDIAHYFGFTDSAVFSRAFKNYYKISPIKYRNNYSKNCKEPYKISQY 128 Query: 115 -----RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF--WHDF 167 +P + E + + L++ I Y+ S ++ ++ + + Sbjct: 129 NRSISKPKCKNTREVKGEIEILELDNMNTIY--TRYTGSYGNLTSTFPKLLERLFTYASE 186 Query: 168 LGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 + + P ++ + + + +++ G+Y++ Sbjct: 187 QNLLGLENTQILAIYHDNPQFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPSGKYLVG 246 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + + +Y + N R E Y + ++ +PI Sbjct: 247 HFDISKSEYSDAWDFMYNEWLSNGNYKLRASFPFEVYL---NNPHNHPQNRHLVDIYLPI 303 Query: 288 R 288 Sbjct: 304 E 304 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 110/297 (37%), Gaps = 16/297 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I L ++E +L + +L+ +A +G+SK+H R+FK T + Y+ +L Sbjct: 9 EYINRIYKLQDYIENNLYETHTLEKLAQVSGFSKYHFHRIFKSATKETVFQYVTRTKLEL 68 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS-------AFG 113 ++ + I D+A Q+ F F+R FKK + +P +R+ + Sbjct: 69 VASTLIARPDLSITDVAYQFGFSDSAVFSRTFKKYYDMSPREFRKQYNNNCKDYLLETIY 128 Query: 114 IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCS--LEQISDFRHEMRYQFWHDFLGNA 171 + + K +T++ P+I + + + + + + + Sbjct: 129 TKNVNSNVNTVKGDVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEK 188 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 + P + + P +++Q ++ + + + G Y + +E Sbjct: 189 KSKP---LAVYHSHPDFSDEEKQRTSICLSIKEPITVDGKSDIGYMSISSGTYAVAHFEI 245 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L + + +YG +P R E Y + + ++ ++ +PI Sbjct: 246 LQSEYGDAWDFLYGEWLPRSGYLPRNYFPFEVYVNNPNEHSENKH---IVDIYLPIE 299 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 15/276 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + L +L HLD+PL LD +A +A +S++H R+++++ G + + L ++ Sbjct: 14 YTVRLLRALDYLWRHLDEPLLLDRLAEEACFSRFHFHRLYRNLMGETVMESRQRMLLHRA 73 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L RP+ +A++ F S F RAF ++ +TP YR+ L E Sbjct: 74 AGELGRADRPLASVAVRAGFSSSAAFIRAFAGRYGETPGRYRQRRLM-------FLNQRE 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 TM + + V + + + + + +I +R P +GL Sbjct: 127 RTMRQVEIVERDAVKV--LMRHHRGPYMEIGKAFDALRAV---QGPQQGVGAPSRSFGLY 181 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 +Q + + + + G Y + G + + E Sbjct: 182 LDDQAQTPAADCRSIACATVPAFMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDW 241 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPIN 278 +Y +P +E Y +A P Sbjct: 242 LYRHWLPASGEMPGDTPCVEEYL---NAPYDTPPAE 274 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 92/289 (31%), Gaps = 15/289 (5%) Query: 1 MDQAG-IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 ++ +L L H + L +A A S +H R+++ V G I ++ RL Sbjct: 4 LEYNEARFAKVLQHLHQHYPHDIDLARLADIACLSPYHWHRLYRAVLGETIYETLKRIRL 63 Query: 60 SKSAVALRLTARPILDIALQYRF-DSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 +A L + +P+ DIA + + Q+F R F+ + +P YR + P Sbjct: 64 HHAARLLLDSHKPLPDIARACGYGGNAQSFARIFRDAYGMSPQDYRARGGVPYPALPPEH 123 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 K + P++ + + I ++ + G+ P Sbjct: 124 T---TATYPVKIRDIAALPVVAL--PHHGDYMSIGASFSQL--ETLLTLRGHLPAPQARY 176 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 +G+ P+ + + L G Y + + G + Sbjct: 177 FGIYYDDPAGCPTAQLRAAAA---VALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHR 233 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y + +E Y + P LR + +P+ Sbjct: 234 AYDWLYRDWLLNSPYQLADAPCLEEYL---NDWQQVPPQELRTNIYLPL 279 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 15/292 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I + ++E ++ + LSL +A A +S +H R+F+ +TG + + R+ K+ Sbjct: 11 YTQRINRAMDYIERNICEELSLAQIADAACFSPYHFHRIFRAMTGETVNQFTSRLRVEKA 70 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE-----WSAFGIRP 116 A L+ + I D AL F S TF R+F+ +F + +RR + + Sbjct: 71 ARRLKQNPSISITDAALDMGFASPSTFARSFQARFGMPASQWRRDATASVEARANETMVL 130 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 + + LE + V + + ++ + E Sbjct: 131 ERPRSSLVADKVEVGKLEPRTVAYV--RRTGNFQERPEIFGEAFGTLMAWAGPRGLAHGA 188 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + L P + L +M+ GG Y + Sbjct: 189 EMMCLFHDDPQVTDAELMRFSSCLTLRG--PADVEGEVGKMMVGGGRYACGHFVITHDQS 246 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Q ++G +P+ + Y P + + IP+R Sbjct: 247 QAAWEYMFGDWLPLSGYEPENIPCFQLY---PSMTGEMGPHEVV--ICIPVR 293 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 17/289 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + +++ +L L + +A S +H +++F++VTG IG YI+ RL Sbjct: 104 HYEAVNGVRTYIDQNLFHELDPEQLAEMVHLSFFHFRKVFRNVTGENIGTYIQRLRLEYI 163 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + I +I +Q + ++ + +AFKK F + + YR + P Sbjct: 164 AHLLIATGQSIEEIGMQTNYQTKFSLAKAFKKHFGISMSAYREKYKSVNAKQEP------ 217 Query: 123 FTMPEHKFVTLEDTP--LIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +MPE K + I V ++ + ++ + Y+ H Sbjct: 218 DSMPEAKIKRINTLKAVCIEVGDTFRDKYAYTTIWKQLLHYKAVH----LQNGPGNRFVS 273 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 +++ P +++ + + + + GG Y +F Y+G + + EF Sbjct: 274 ISQDNPWVTPMEQRRFY--IGVLVEGRANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFY 331 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 T+Y P +++ E Y A D L E+ IPI + Sbjct: 332 KTIYNQWFPYSMYHQKRPLTFEVYLNAPDE---TPVEELLTEIYIPIDK 377 >UniRef50_C5EQJ6 AraC-family transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQJ6_9FIRM Length = 289 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 75/298 (25%), Positives = 120/298 (40%), Gaps = 26/298 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 II++++ +++ HL+ L ++++ +AGYS++HL RMF +TG ++ YI+ RRL+++ Sbjct: 4 NIQIIQEVVDYIDSHLEDRLDAESISRQAGYSRYHLSRMFTSITGLSLHTYIQRRRLTEA 63 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR--- 119 A L T RP++DIAL + SQQ FT F+ F TP +R+ ++ ++ Sbjct: 64 ARQLVFTDRPVMDIALSAGYGSQQAFTVGFRALFRTTPRAFRKKGDFHPLQLKFTADGTD 123 Query: 120 -LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV- 177 L + + + + L G ++ I Q W TIP Sbjct: 124 ALRGDRIMDIRTMESGPIYLAGYKKNTRLGFFVIG--------QCWRRLHAAKHTIPNRK 175 Query: 178 ----LYGLNETRPSQDKDDEQE-VFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG- 231 L GLN+ D Q Y A Q Q L G+YV+F + Sbjct: 176 DPDFLVGLNDYTKWDADADRQPAFDYYAASEQTQPGRLPPGMEAKELPAGKYVIFRFRAR 235 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q +Y T P D RY D E +PI Sbjct: 236 STDSLQPVADYIYKTWFPQSTCRLNGHAPYDFARYGEEMD-----ADGKSLIEYWLPI 288 >UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RHZ9_9MOLU Length = 280 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 110/296 (37%), Gaps = 24/296 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E HL + + + +A AG +H Q+ F +T ++ YIR RR+S Sbjct: 1 MEWIERLNTTIEYIENHLTEKIDYEQLAKIAGCPSYHFQKTFLYMTNISLSEYIRKRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEW--SAFGIRPPL 118 +AV L+ I+DIAL+Y ++S F RAF+ P+L R+ S ++ Sbjct: 61 LAAVDLQTGEDKIIDIALKYGYESPTAFNRAFQAVHGIAPSLVRKKNVQIKSFPALKFTF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGV----TQSYSCSLEQISDFRHEMRYQ-FWHDFLGNAPT 173 + + + ++G+ ++ + QI + + Sbjct: 121 SIQGLDELSFRIEKKDSFKILGISSLLSKELLENFVQIPKQWDKALNDGTLNQLYRLNNQ 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 P L G+N + ++ F + + + + + +F+ G Sbjct: 181 TPLGLLGVN-----IHQHEDWRYFIAVS-----STNHNQNFEEYHIGSATWAIFSGHGTN 230 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +QE V +P DIE Y P + E +PI + Sbjct: 231 RTLQELQCRVITEWLPTSGYEYANIPDIEVYLK-------ADPNDAIYEYWLPIIK 279 >UniRef50_C5RJ15 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJ15_CLOCL Length = 290 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 110/297 (37%), Gaps = 22/297 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + ++E +LD + + VA +A S++H RMF +T + YIR R+L+ Sbjct: 7 MVWLDRMNSAINYIEENLDGEIEMGEVARRACCSEYHFTRMFSFITDIPLNEYIRRRKLT 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPL 118 + L+ + I+D+A +Y +DS +FTRAF+ TP+ R I + Sbjct: 67 LAGFELKNSDIKIIDLANKYGYDSPNSFTRAFQGMHGVTPSEARILGVEIKSYAPISFLI 126 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVT--QSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 + ++ V + L G++ S E I DF ++ + + A Sbjct: 127 TINGGIGMNYRIVEEDALTLFGISLTTRREESFETIPDFWNKCEEERITYKIVEAGHGNE 186 Query: 177 VLY--GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT--YEGL 232 + D + + Y L + +G V + + +F E Sbjct: 187 RTLLKSVLYDM------DNEMMKYMIGLDMPE-EGVSDEFEVVTIPAKTWAVFPLVLEKP 239 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + ++ P +G ER + +D K E +P+ + Sbjct: 240 EDSITSIWKRIFTEWFPNSGYELDEGSWQERCHWRDDGKM-------IVEAWVPVVK 289 >UniRef50_A7JZZ4 Putative uncharacterized protein n=3 Tax=Vibrio RepID=A7JZZ4_VIBSE Length = 310 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 21/299 (7%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 I +L ++ +LD LS+D ++ + +S+W LQR+F+ TG ++ YIR +LS +A Sbjct: 11 INRIHSVLDYIHNNLDIALSVDEISKASCWSRWQLQRVFQQHTGVSVAHYIRELKLSLAA 70 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 L T+ LDIA++ F S+ F+RAFK F+++P YR++ + + G+R PL L + Sbjct: 71 ERLIHTSDRSLDIAIEMGFASEHAFSRAFKNMFSKSPRDYRKAQQLT--GLRQPLTLRDT 128 Query: 124 TMP--------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 E + T L G + +F+ ++ W + Sbjct: 129 PEDENRHKCFIEVRIETKPAFVLAGYHEPIYGLFSATPNFQSKV-PSLWSQLYSSENHTH 187 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD------GYVLTGHPVMLQGGEYVMFTY 229 L ++ Q++ Y + A G +++ Y + T+ Sbjct: 188 LERNYLGVIDVTKAYSSNQQLEYWAGYEYNSASRTSIYKGSTQEPDLLVVPEQTYAVITH 247 Query: 230 EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G + + + +P N G ++E Y D N + IP++ Sbjct: 248 IGKASNLAATLEWFILHWLPYSNYHGIDGYELEVYPEDYD----VESENAQMHYWIPVK 302 >UniRef50_A6VR73 Helix-turn-helix-domain containing protein AraC type n=2 Tax=Marinomonas RepID=A6VR73_MARMS Length = 306 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 121/307 (39%), Gaps = 27/307 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D+ I +L ++ +LD+ + + ++A K+ +S+W QR+F TG ++ YIR RLSK Sbjct: 5 DRLTRIEKVLDYIHENLDESIHVSSLAEKSCWSRWQFQRVFGQATGLSVAQYIRELRLSK 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L + +DIA+Q FDS+ +F+RAFK+ F TP YR+ + +G+R PL+ Sbjct: 65 AAELLLSSKNRHVDIAIQCGFDSEISFSRAFKQMFNCTPRDYRQRGKR--YGLRTPLQYR 122 Query: 122 ---------EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 T + + + + + G + +F E Q W + Sbjct: 123 CPNKAQTETPKTFTQIRIESRDGFHIQGRSAWIRGLFSASPNF-SERVPQLWSQVISEVK 181 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYV-----------LTGHPVMLQG 221 T+ + ++ Y + V + Sbjct: 182 TVTKGYRPIGIIDTQDHAQHPDQMLYWAGYLEPINTSSPTIFSGANPFNTTPLDTVRVPL 241 Query: 222 GEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC 281 EY + G + V++ + +P N +G ++E Y P D Sbjct: 242 QEYAVIPVYGKSSAVEKALEWFIYQWLPESNYYGVQGYELEVYEPDYDP----SSSKSYM 297 Query: 282 ELLIPIR 288 E +PI+ Sbjct: 298 EYWLPIK 304 >UniRef50_B8I0Z7 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=B8I0Z7_CLOCE Length = 287 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 116/296 (39%), Gaps = 21/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + ++E +L +S D VA A S ++ QR+F + G + YIR RR++ Sbjct: 1 MEWLNQMSRAVDYIENNLTNDISYDEVAGIACCSTYYFQRIFSYIAGIPLSEYIRRRRMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPL 118 K+A L+L+ +++IA++Y + + F RAF P + R I + Sbjct: 61 KAAFELQLSGARVMEIAVKYGYSTAAAFNRAFHSVHGVAPTVARVKGTKLNAYTPISFTI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVT----QSYSCSLEQISDFR-HEMRYQFWHDFLGNAPT 173 + ++ T + ++GV + + E + F + ++ + + Sbjct: 121 NITGGERMRYRIETRDRIRIVGVRVPLEEEPEQNFEIVPAFWDNTLKSSVFSKIIELTNK 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 P + G+ ++ +E++Y A + D+ + +V+F +G Sbjct: 181 DPHGILGITAY------ENPKEIYYYIATSTDKP--VPEDLVEYEIPAATWVIFECDGHF 232 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VQ +P + DIE Y +E G E+ I ++ Sbjct: 233 PESVQTIFRRFLTEWLPFSGYDYAELPDIEVYPISEKKMIGGHS-----EVWIAVK 283 >UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria RepID=A9KRP2_CLOPH Length = 292 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 14/277 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD +++ ++E +L +S D ++ AG S ++ QRMF + + YIR RRL+ Sbjct: 1 MDWIKKFNEVIKYIEDNLKGEISYDTISQIAGCSIYNFQRMFSYIADKPLSEYIRNRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A + + I+DI+ +Y ++SQ F+RAF+ P+ R + + Sbjct: 61 LAAFDIMNSKDRIIDISFKYGYESQDAFSRAFRSFHGVLPSAARNETVQLKSCPKLSFQI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE------QISDFRHEMRYQFWHDFLGNAP 172 + ++ V ++G+T + S + + + + L Sbjct: 121 NIKGENYMNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTD 180 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQAD----GYVLTGHPVMLQGGEYVMFT 228 P G+ + +E + D + +V+F Sbjct: 181 YRPAGFLGICADGKWGNS-EEMDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFD 239 Query: 229 YEGL-GTGVQEFILTVYGTCMPMLNLTRRKGQDIERY 264 +G + VQ+ Y +P IE Y Sbjct: 240 ADGELPSAVQKIHKQFYSEWLPNSGYELADLPVIESY 276 >UniRef50_Q17ZV7 AraC-family transcriptional regulator n=7 Tax=Bacteria RepID=Q17ZV7_CLOD6 Length = 289 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 17/296 (5%) Query: 1 MDQAGI-IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 MD I I L ++E HL D+ L L+ ++ + GYSK+HL RMF V G ++ YI+ RR Sbjct: 1 MDNNLITIEKTLDYIEKHLLDEMLDLNVISKEIGYSKYHLHRMFTSVVGFSVHNYIQRRR 60 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 L+++A L T +PI++IAL +D+Q++F+R FKK F ++P +RR ++ ++ + Sbjct: 61 LTEAARMLIFTEKPIIEIALISGYDTQRSFSRGFKKMFKRSPNFFRRHQDFLPLQLKFDI 120 Query: 119 ----RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 +L + + K V D ++G + I ++ + + Sbjct: 121 HNRKKLRGDMVLDVKKVNCADINIVGYSGKVRKGFHIIGKCWRDLHK---NKEMIENKVD 177 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 L G+++ ++ ++ Y +L Y++FT+ G Sbjct: 178 LGFLIGVSDYSNFKEIENTPTFTYIAGAQVATFGKLPNGMEKFVLPKSNYIVFTFIGKNE 237 Query: 235 G-VQEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q + +Y P + + D +Y D + +PI Sbjct: 238 DSMQNVVEYIYQEWFPNSSCQFNENNLYDFVKYGEKTDENGLS-----EIQFWVPI 288 >UniRef50_D1ARB2 Transcriptional regulator, AraC family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARB2_SEBTE Length = 285 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 113/296 (38%), Gaps = 19/296 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + L ++E +L+ + + +A S++++QR+F ++G +G YIR RRLS Sbjct: 1 MNWISALNNALEYIENNLENDVKIKKIAQICLCSEYNVQRVFSIISGVTLGEYIRNRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL--YRRSPEWSAFGIRPPL 118 K+AV +R T I+DIA +Y ++S F++AFK +P R + + + + Sbjct: 61 KAAVDIRETNMRIIDIAFKYNYESADAFSKAFKNFHGISPKDGRVRSNELKTYPKLHFSM 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC---SLEQISDFRHEMRYQFW-HDFLGNAPTI 174 + +++ +IG+ ++Y +E I F E + Sbjct: 121 IIKGGKEMKNRIAEKGKLRVIGMKRTYKNVEEGMENIPKFWIEFNASKECTEMCSKMDGE 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 GL + Y + + + + ++++F +G Sbjct: 181 LKGFLGLC-----IPHETGAGYDYMICI--NSSAEAGGELEEYEIPDAKWMIFEAKGKLP 233 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 VQ +Y + D E Y + E+ IP+ + Sbjct: 234 ESVQSVTKQIYEEVLTGSEYKHDNKPDFELYLS-----GDIENEDYITEIWIPVVK 284 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 105/286 (36%), Gaps = 13/286 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + ++ + H L+++AA A +S WH R++ VTG ++ +R RL+ + Sbjct: 10 YRARVARVVAHIVAHPLSTHRLEDLAALAHFSPWHFHRLYAGVTGESVAVTVRRVRLAHA 69 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L+ + +IAL ++S Q F+RAF + Q P+ ++ + + A Sbjct: 70 ASLLQEGMLSVTEIALASGYESPQAFSRAFSQFSGQAPSAFQAAMQRLAPDAPEERLAAS 129 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + ++ + + I +R+ +G P V G+ Sbjct: 130 SPATTVRLIEQPAQQVLALRHRGPAAT--IPHTHRRLRW-----LIGELP--GTVWLGMC 180 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + D ALA+ A + + G Y G T + Sbjct: 181 RED-AGDPGSGLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNA 239 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y +P +E Y ++ P LR +LL+P+R Sbjct: 240 LYARWLPASGYEPDDRPALEHYL---NSPRNAAPAELRTDLLVPVR 282 >UniRef50_A9KR14 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR14_CLOPH Length = 281 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 112/295 (37%), Gaps = 21/295 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + D A A S+ L MF VTG + YIR RRLS Sbjct: 1 MDWNIRLNRALDYIEENLSNEIDFDYAAKLALCSRNDLSNMFFIVTGIQLSEYIRRRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ L+ + I++I+++Y + S F RAF+ Q +P R + R ++ Sbjct: 61 LAALELQNSDEKIINISMKYGYSSPTAFNRAFQNQHKVSPQYARSRKIFINSYPRITFQI 120 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQ--ISDFRHEMRYQFWHDFLGNAPTIPP 176 + + E ++G +++ + + + F ++ + + + + P Sbjct: 121 ILNGEINMKCRIEKKEAFKVVGAKKTFRNDMVENLLPHFWRDLPQETYEKIIKQSNGEPK 180 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 L GL + E Y A + V + + + +F EG T + Sbjct: 181 GLLGLC-----ANFGGEHTFDYYIA--TSTKNSEVQDLDQINIPEATWAIFEAEGTVTEL 233 Query: 237 QEFILTVYGTCMPMLNLTRRKG--QDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 I ++ P R D+E Y+ N EL P+ + Sbjct: 234 ---INRIWQEWFPSSGYRRADNSIPDVEVYFDY-----DFPKENYTYELWYPVVK 280 >UniRef50_D1WZP5 Transcriptional regulator, AraC family n=7 Tax=Actinomycetales RepID=D1WZP5_9ACTO Length = 290 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 112/294 (38%), Gaps = 17/294 (5%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS- 62 + + + +E HL + + +A A S++H +RMF + G + Y+R RR++ + Sbjct: 2 LERLNEAMEHIEAHLGERVEAAELARIAMTSEYHFRRMFSALAGLPLSDYVRRRRMTVAG 61 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL-- 120 A L R +LD+A++Y +D+ + F RAF+ P RRS R RL Sbjct: 62 AEVLGAPDRTLLDVAVRYGYDTGEGFARAFRAVHGIGPGEARRSGAVLRSQQRLTFRLVV 121 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 T +++ V + ++G + I++F + + + P Sbjct: 122 EGSTAMQYRLVEKDAFRVVGRRARVPLVHEGPNPAIAEFIRGIGREELDRIAALSDQDPA 181 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGTG 235 L G++ + + + E+ Y + + + G + +F EG Sbjct: 182 GLVGVS-DQLDPSRAEGTELDYYHGVV--SGAEPPEDLDSLSVPAGSWAVFENEGEFPGA 238 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q V+ P R G +I + + EL IP+ R Sbjct: 239 LQYLWRDVFTQWFPSNPYVSRPGPEI------LRVRLTEEGKRAEAELWIPVER 286 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 104/330 (31%), Gaps = 47/330 (14%) Query: 1 MD--QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 M+ I+ L ++E +L+ LSL +VA + +S++H R+FK V + YI RR Sbjct: 1 MNSVYLARIQQALEYIETNLNTHLSLSDVAKASHFSEFHFHRIFKGVMDETLNDYIGRRR 60 Query: 59 LSKSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 + ++ L I IAL+ F S F +A K F +P+ R + S + Sbjct: 61 MERAVNKLMCYPEHSITHIALESGFSSSANFAKAVKLYFGFSPSELRDPSKLSNQSDKTK 120 Query: 118 LRLGEFTMPEHKFVTLE---------------------------------DTPLIGVTQS 144 ++ V L D + +++ Sbjct: 121 NSKIGKIQSKYGKVFLPSDLYPTQVIKNDSEQQQDAAELEIKSLQKGEKMDVKVKNLSEQ 180 Query: 145 YSCSLEQISDFRHEMRYQFWHDFLGNAPTIP-----PVLYGLNETRPSQDKDDEQEVFYT 199 L + + YQ W + A T + P ++ Sbjct: 181 KVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQRFAFCYDNPVLTPLNKCRYEAA 240 Query: 200 TALAQDQADGYV-LTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKG 258 + + V + G+Y + Y+G G + L Y +P Sbjct: 241 IIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSHWLPQSGYEPDHF 300 Query: 259 QDIERYYPAEDAKAGDRPINLRCELLIPIR 288 IE Y + E+ I ++ Sbjct: 301 PVIEHYLNDARVDGF-----VEMEIYIKLK 325 >UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BA46_9GAMM Length = 293 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 17/292 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + LL ++ H+ +P+SLD +AA++ +S+W LQR+F TG+ + Y+R +LS +A Sbjct: 8 NRLDQLLDYIHRHIHEPMSLDTLAAQSAWSRWQLQRVFVAYTGYTVAQYVRELKLSLAAD 67 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE-- 122 L + +LDIAL + F S+ F+RAFK+ F +P YR+ GIR PL+ + Sbjct: 68 CLLENSDRVLDIALSFGFGSEVAFSRAFKQFFKVSPHQYRKRG--LRSGIRTPLQRADVS 125 Query: 123 ------FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 T+ + G+ + L +F + W F P Sbjct: 126 RLNLPANTLYHVRLEHKPAFDFCGLPTRINGLLSGQPNF-EDRIPAAWQHFQQLTHRRLP 184 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 + + ++ Y T + Q + V + L +Y + Y+G Sbjct: 185 TDRPRIGLIDTFSQPTLGQLVYWTGIEQSKPSAPV-FLEKLSLPTSDYAVLPYQGPIDHF 243 Query: 237 QEFILTVYGTCMPMLNLTR-RKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + +P ++ + ERY P+E + E +PI Sbjct: 244 KHAVTWLLAEWLPNADVHHSNNRFEFERYLPSE----TAGSEMVNAEYWLPI 291 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 21/294 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I D+L ++ + + LS +A A YS+ H R+FK V G +I YIR R+ + Sbjct: 10 HISRINDVLYFIHQDISRELSAKALADVAAYSEQHFHRVFKQVVGESIHQYIRRTRMEYA 69 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPP-- 117 A L T +LDIA + F S +F+RAFK F+ P +R ++ P Sbjct: 70 ANQLMFDTRSSVLDIANKCGFSSVSSFSRAFKATFSMAPGEWRYHDLHISDKPYLKDPEV 129 Query: 118 ----LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 R+ + T+PE K + + V + I + + + W + G + Sbjct: 130 AAGYHRVAKRTLPEPKITEVPERMAAYV--RHVGYNRSIKNAW--LILKAWANSEGRSFE 185 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + +GL+ + P+ + D+ A+ D+ Y + +++ GG + +F G+ Sbjct: 186 VQ---FGLHHSNPAWVELDKCRYVACIAI--DKPLKYRGVVNQMVIPGGLHAVFRLHGVY 240 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + I V +P R Y+ + + +PI Sbjct: 241 GELLPQISMVLEKWLPASGFKLRSTPAYVHYHS---NHFVNESEAFELDFYLPI 291 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 129/297 (43%), Gaps = 24/297 (8%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I ++L+++ ++D+PL+++ +A + +S+W LQR+F++ TG + Y+R +RLS SA+ Sbjct: 12 NRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSAL 71 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 + + +LDIA Y F S+ F+RAFK+ F ++P Y++ + ++ Sbjct: 72 EVLDKKKRMLDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQKPFLKQVNVDP 131 Query: 125 MPE-----HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF---LGNAPTIPP 176 + + ++G++ L DF ++ W+ + P+IP Sbjct: 132 LLNSHFYRVRLEYKPSFKVLGLSTRLQGILSDTPDFNEKV-PSVWNALDTSIVYLPSIPE 190 Query: 177 VLYGLNETRPSQDKDDEQEVFYTTAL-----AQDQADGYVLTGHPVMLQGGEYVMFTYEG 231 Y + +++ + Y + + D+ + + + + EY + ++G Sbjct: 191 QKYAV----IDTREENADSLLYWAGINCEALSTDELNQHKADLQIITIPEQEYAVLPFKG 246 Query: 232 LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + + +P +G D+E Y + D E +PIR Sbjct: 247 AAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYQSSTTQGVID------VEYWLPIR 297 >UniRef50_UPI0001BC4194 AraC family transcription regulator n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC4194 Length = 277 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 115/295 (38%), Gaps = 25/295 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + + + ++E +L+ + + A S +H QRMF + G +G YIR R+++ Sbjct: 1 MEWIERLNEAVEYIEMNLENKIDYTKASKIACCSVYHFQRMFSYIAGVTLGEYIRRRKMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 K+A L+ + IL+++ +Y +DS +F+RAF+ +P++ R + L Sbjct: 61 KAAFELQRSDIKILELSAKYGYDSPTSFSRAFQSIHKISPSIARNKNITLKTYPKLTFSL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE----QISDFRHEMRYQFWHDFLGNAPTI 174 + E+ + ++G+ + +E +I DF +E + L Sbjct: 121 SVKGEEELEYYITEKDSLDILGIGKKIELDMEKNFFEIPDFWNENIKNKNIEKLLKYNAK 180 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 + G++ +EV+Y A+ D+ + GG + +F Sbjct: 181 DKNILGVSLYN-------NKEVWYYIAVFNDREGE--DGMERHKIPGGTWAVFRCSSPFL 231 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 Q+ Y +P T + DIE Y E+ I+ Sbjct: 232 ENSQKIYRRFYTEWLPHSGYTYGETADIEIY---------PDSNEKDMEIWFSIK 277 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 109/304 (35%), Gaps = 23/304 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M +I++ L +++ H+ + ++++ +A AG+S +H ++F G + YI R+L Sbjct: 1 MHYLNLIQNTLDYIDFHILEKITVEELAKIAGFSTYHFYKVFNSFVGMPVMEYITRRKLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS----PEWSAFGIRP 116 + L + +LDIAL Y F++ FT+AFKK F P+ YR P + Sbjct: 61 YALYDLSNG-KKVLDIALTYGFETHAGFTKAFKKSFGYPPSFYRIHAPIGPLKKVDLKKL 119 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE----QISDFRHEMRYQFWHDFLGNAP 172 + E K + + ++G + I F + + L Sbjct: 120 KENKTGGIIMEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQ 179 Query: 173 TIP-PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY-- 229 P YG+ + + Y + D ++ + + + Y +FT Sbjct: 180 FPPRHGEYGICVNTNMETDE----FSYILGVEVLSFDHAMIDMYTLDVPAATYAVFTTPS 235 Query: 230 ---EGLGTGVQEFILTVYGTCMPMLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCELLI 285 +Q + P + D E Y + E+ + Sbjct: 236 VEDHDFVDSIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSK---FSMEIYV 292 Query: 286 PIRR 289 PI++ Sbjct: 293 PIQK 296 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 115/292 (39%), Gaps = 23/292 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I ++ ++ HL + L+L+ +AA+ S +H R+FK + AYI +R+ ++ Sbjct: 9 HQELINQVIDYIHTHLHKALTLEMLAAEMHMSVYHFHRLFKSHLQETLSAYITRQRMERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + L+ + +++ + +D+ Q+F++AFK+ F +P + + ++ P + Sbjct: 69 VMYLQTRDLSLQELSEKMGYDTAQSFSKAFKRYFGVSPVAFGNTLTFNTPETTPIEDIAF 128 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG-----NAPTIPPV 177 + E + + + + + E W G + Sbjct: 129 IGLDEPEVLLISPMYIAYIRIIGPYG-------EKESYELGWGKLCGFLKENKLQSKATR 181 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 +G++ P+ K + + ++AQ + ++ G+Y ++TY+G +G+ Sbjct: 182 WFGISFDDPTITKKKQCRFYACASVAQRI--KPSGAIGTLTIESGKYAVYTYKGSYSGLL 239 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y R E Y D P ++ IPI++ Sbjct: 240 RAYTYIYS----REKGRLRNALSFEEYVTWSDN-----PAKQITKIYIPIQK 282 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 113/301 (37%), Gaps = 24/301 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I +L ++ HLDQPLSL+++A + S+W LQR+F+ TG + Y+R +LS +A Sbjct: 8 SRIERVLNFIHTHLDQPLSLEDIAEHSQCSRWQLQRIFQQQTGLNVAQYVRELKLSIAAD 67 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG--- 121 + +LDIA + F+S+ +F+R+FK+ F +P Y+R +R Sbjct: 68 KVLSGQSRMLDIAYELGFNSEVSFSRSFKQLFGVSPREYQRRGIRVGLRNPIAIRPEFTA 127 Query: 122 ----EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP---TI 174 + T + + + G++ L DF + W + Sbjct: 128 NKKIDTTFLQTHIEHRQAFTVYGLSSPIKGVLSDAPDF-SSIVPDTWLRLFDIIDGVLPL 186 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYV-------LTGHPVMLQGGEYVMF 227 + G+ K ++Q + Y L D + + EY + Sbjct: 187 AGNMLGV--VDTLSLKTEQQSIRYWAGLELDAEQRQSLQTLLTEEKLCSLTIPSQEYAVV 244 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 Y G + + + +P G ++E Y + E +PI Sbjct: 245 AYSGTVNEFSQLVEWLICDWLPESGFVSLDGYELESYGKITSTITDLKH----MEYWLPI 300 Query: 288 R 288 + Sbjct: 301 K 301 >UniRef50_C8P1I3 AraC family transcriptional regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1I3_ERYRH Length = 288 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 122/296 (41%), Gaps = 23/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ +++ + ++E HLD L L+++A + YS +H +F +TG + Y+R RRLS Sbjct: 7 MNTLEHLQNAIDYIETHLDSSLKLEDIAIHSNYSPYHFHNLFSALTGMGVMDYVRRRRLS 66 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY--RRSPEWSAFGIRPPL 118 ++ + ++D+A+ Y ++S ++F++AFKKQ TP+ R+ + F I+ Sbjct: 67 EAGMLFISQKVKVIDLAVHYDYESAESFSKAFKKQHHYTPSEIKKRKGSLQTTFPIKITH 126 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSC----SLEQISDFRHEMRYQFWH-DFLGNAPT 173 + + E + G +++S +L++I F E+ D Sbjct: 127 NQKGAVKMKMRIEEKESVNIAGYQKTFSYENGANLKEIPMFWDEINQSAKDLDLFKMNDH 186 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 + GL + + + + Y + D V L +++F G Sbjct: 187 KIEGIVGLCQ------QASDGFMTYLIGTSCDFQ----EGLVNVELPKSRWLVFDAVGPL 236 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VQ + +P + D+E Y ++ +L E+ + I+ Sbjct: 237 PQSVQNTWRDIVSLYLPTCSEEIDGSMDLEVY-----SQEDPNSESLVTEIWLRIK 287 >UniRef50_A9KR18 Transcriptional regulator, AraC family n=3 Tax=Firmicutes RepID=A9KR18_CLOPH Length = 301 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 107/304 (35%), Gaps = 25/304 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + L ++E +L + + VA KA S ++ QRMF +T I YIR RRL+ Sbjct: 1 MDMLTKMNAALDYIENNLTEDIDFTIVAQKACCSSYNFQRMFSFITDVPIAEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 ++A+ L+ T ++D+AL+Y +DS +F+RAF TP ++S + + Sbjct: 61 QAAIELQNTNAKVIDVALKYGYDSTVSFSRAFSNIHGITPNEAKQSGVELKAYPKISFQI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQ--------SYSCSLEQISDFRHEMRYQFWHDFLGN 170 + ++ T E + G+ S+ E Y+ + G+ Sbjct: 121 SIKGEKEMNYRIETKEAFDVFGIETVASLSGEDSFVSPAELWRKSHQNGDYERLFNASGD 180 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT-- 228 P + K + Y + + Y +F Sbjct: 181 LPKFISQDLCKIHGVENYRKTEGNTFPYMLCSFVSDSFK-TDGYTIQHIPSQTYAIFPSE 239 Query: 229 ----YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 EG ++ Y +P N R G + E Y EL Sbjct: 240 KFMWNEGSMEVLRNLQKRFYSEWLPTANYERVSGANFEIYGG--------DKEYGYIELW 291 Query: 285 IPIR 288 P++ Sbjct: 292 FPVK 295 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 116/302 (38%), Gaps = 24/302 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + + +L ++E +L+ LSL++++ KA YS +H R+F + G + Y+ +R+ + Sbjct: 9 EYIRRVNFVLDFIEKNLEADLSLESLSKKAYYSPYHFHRVFSTIVGENLNQYVNRKRIER 68 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY--------RRSPEWSAF 112 +++ L + PI ++A Y F+S+ +F+RAFKK + +P + R+ Sbjct: 69 IASILLIRSDTPIKELAYIYGFNSESSFSRAFKKYYGISPTRFKLEGKNTLRKIGIEFFT 128 Query: 113 GIRPPLR---LGEFTMPEHKFV--TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDF 167 + + ++ + V L++ L GV + ++ + + W Sbjct: 129 TEKYICSIDHIKKWIEMNAQIVITELQEIKLAGVM--HIGEFDKAGNMFQRLME--WGAK 184 Query: 168 LGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF 227 T + P+ + + +++D P+ L+ G Y + Sbjct: 185 KRVLATSDFKAITIYHDNPNVTQTSKLRFSTCITISEDINA--DGEIRPINLKKGIYAVG 242 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +E + + + R G E Y+ + ++ IP+ Sbjct: 243 HFEIKADEIPTAWKNMC-IWVIENGYEFRDGDYFEMYH---NDHKTHPDQKFILDICIPL 298 Query: 288 RR 289 R Sbjct: 299 ER 300 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 107/286 (37%), Gaps = 13/286 (4%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +I ++ ++ HL + L+ DN++ A S +H +R+FKDV G +G YI+ RL Sbjct: 104 HYALIINVQEYINRHLFEDLNSDNLSHIACMSIYHFRRVFKDVVGENVGDYIQRLRLEYI 163 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L T + ++ Q F ++ T +RAFKK F + +R++ A + Sbjct: 164 AFKLISTNTRVSELLEQTNFHNKHTLSRAFKKHFQMSIPAFRKTYSSVACENKI------ 217 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 P+ +++ + + + +Q +F + N ++ Sbjct: 218 IKQPDCSIKRIKEFKVAYLKFERTHRNKQAYSTLWGQIIEFAKKY--NLTDKGFKYVSIS 275 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + D+ + + +Q G Y +F +G + + Sbjct: 276 LDSLDITEIDKCRFLIGITVPYSM--EVPKGFGTLNIQAGLYSVFNIKGGYHELNKIYRN 333 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VY +P R+ E Y + + D L E+ +PI Sbjct: 334 VYLDWLPNSKYRLREQMTFEIYANTPNKTSTD---ELVTEIYLPIE 376 >UniRef50_A4B9Y7 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4B9Y7_9GAMM Length = 297 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 113/295 (38%), Gaps = 17/295 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 I+ L+ +E +L +++ +A S WH QR FK + G +G YIR RRL+++A Sbjct: 6 QHIQTLVDRIEANLADDVNVLGLADAFHMSPWHFQRTFKSLIGDTLGGYIRGRRLTRAAQ 65 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG--- 121 L + R ++DIA+ F+S + F+R+FK F TP +R +P L L Sbjct: 66 LLLESRRSVIDIAVSVGFNSHEAFSRSFKAYFNVTPKAFRAERPAITLREKPLLTLELFQ 125 Query: 122 ---EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL----GNAPTI 174 + + LIG + D+ ++ + W D L + Sbjct: 126 HLADGMDQNPVITERPEQHLIGQQIAIPSPFVSDVDYC-DLLFTPWTDLLSVEAALPGRV 184 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT-YEGLG 233 P +GL PS ++ + A Q + + MF Y G Sbjct: 185 PGEYFGL-MVSPSGTFTEDSLFYLAGAGVQQPIADPGEGMVALSFPAQQVAMFDIYSGTE 243 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V + + +YG +P TR G D E + D +PI+ Sbjct: 244 DTVAQTVDFIYGYWLPNSQYTRAGGHDYEYFENVSDFTVPRLHSRYV----LPIQ 294 >UniRef50_B8FSS1 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSS1_DESHD Length = 287 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 115/289 (39%), Gaps = 13/289 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ ++E HL + LSL+ ++ AG S +H +++F ++G + YI+ R+LS++ L Sbjct: 5 LNHVIDYIEEHLTEELSLEIISEYAGVSDYHFRKIFFYLSGLTLSEYIKNRKLSEANKDL 64 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP-EWSAFGIRPPLRLGEFTM 125 + ++A +Y + S FTRAFKK P+ + S + + + T Sbjct: 65 LQGE-TVTEVAFKYGYQSMDGFTRAFKKWSGFLPSDVIKKGLSKSFPKLSFVISVKGGTA 123 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT----IPPVLYGL 181 E + L+GV++ E ++ ++ + P + Sbjct: 124 MEFRIEDKPAFNLVGVSKRVPMQFEGVNKEIVKLAQSITAEQREEMHALQNIEPYEIINA 183 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFI 240 + + +E ++ + + + + V ++ + +F EG + +Q+ + Sbjct: 184 SYDADADFLKEEGDLTHLIGILTTE-NQVSDLLEKVPVEACTWAIFPNEGPFPSMLQDTM 242 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y +P N K + + E+ IP+R+ Sbjct: 243 AKIYSEWLPSSNYEVIKAPAF-----SFTKMNQHKKDCAYSEVWIPVRK 286 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 220 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 86/286 (30%), Gaps = 16/286 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 A + +L WL H L +A A S +H R+++ + G + + R+ ++ Sbjct: 9 YAARLEPVLQWLARHPQATPDLYRLAELACLSPFHFHRVYRALMGETVSDTAQRMRMQRA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L + +A + + S +FTRAF + P YR E Sbjct: 69 ALELTRGQDDLSRVAQRAGYQSLASFTRAFSASYGAPPGRYRAQHLLKR-------STRE 121 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 M V+ L + + ++I + + + L G+ Sbjct: 122 SVMYSVNLVSYPGLTLAAL--PHQGDYQRIGESFDRLALLAVNQGLIAPHAESGPWIGVY 179 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P Q + A +++ + Y G T + Sbjct: 180 YDDPRQVETGRLRSHACVA----SKGAPGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDW 235 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ +P E Y + L + +P+R Sbjct: 236 MFSEWLPASGEEPLDFPMFEEY---ANDPKTTPAAALLTRIYLPLR 278 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 113/296 (38%), Gaps = 20/296 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ +L ++ HLD L L+ +++ A +SK+H R FK G ++ Y++ RL ++ Sbjct: 11 YHARMQRVLDHIDRHLDGDLDLEAMSSVAAFSKFHFHRQFKATFGVSLHRYVQLARLRRA 70 Query: 63 AVALRLTA-RPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAF--------G 113 + L + + DIAL +++ F RAF+++FAQ+P+ +R+SP+W + Sbjct: 71 SKRLADGQGQSVTDIALDAGYETPDAFARAFRQRFAQSPSRFRKSPDWEPWLAAFGPLNA 130 Query: 114 IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 R + FT + + T + + R+ W G +P Sbjct: 131 ARSKIMQTTFTPDQVALREVAPTRVAIFEHRGDPETLDATIQ----RFIAWRKAAGLSPR 186 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQA-DGYVLTGHPVMLQGGEYVMFTYEGL 232 + + + + + + DQ D T + GG + G Sbjct: 187 T-NPTFNIWHSERRPPDPADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGD 245 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 ++ L +Y +P R D Y + EL +P++ Sbjct: 246 THNLEPAALYLYRDWLPASGEEMR---DFPIY--CQRFFLDAPEQGTAAELFLPLK 296 >UniRef50_A6LX85 Transcription activator, effector binding n=2 Tax=Bacteria RepID=A6LX85_CLOB8 Length = 297 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 119/306 (38%), Gaps = 28/306 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++E HL + ++ +NVA + S ++ R+F + G YIR R+LS Sbjct: 1 MSFGKSLQSAIDYMESHLLEKINYENVAKEVHMSCYNFHRIFSLMAGITANEYIRNRKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + L+LT I+D+A +Y +++ ++F +AF + +P L +R +++ Sbjct: 61 LAGQELQLTDSKIIDVAFKYGYETPESFAKAFSRFHGVSPKLAKRKGTQLCLFNPLAIKI 120 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQSYSCSLE------QISDFRHEMRYQFWHDFLGNA- 171 ++ I +++S + I DF E + + + N Sbjct: 121 ILEGGNTMNYRIEETGKQRFIAKVRAFSNEIMNEAGNHDIPDFWGECHKEHLVEEIRNMR 180 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYV-------LTGHPVMLQGGEY 224 P LYGL S K +E Y + D+ + Y Sbjct: 181 PDGKKDLYGLC----SPTKKNETTFDYGIGVLIDEDTHIDNEEAMLKKGYRIWEVDSATY 236 Query: 225 VMFTYEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCEL 283 V+F G G + E + +P + + + D E Y + L CEL Sbjct: 237 VVFKCYGNNGDCISEMWSRFFKEFLPQSDYEQTEDTDYEIYLNEGEPG-------LFCEL 289 Query: 284 LIPIRR 289 IP++R Sbjct: 290 WIPVKR 295 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 106/307 (34%), Gaps = 32/307 (10%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + +L ++E HL++ LSL+ +AA A YS +H R+F+ V ++ YI +R+ K Sbjct: 10 DHIKRLNKVLQFVEDHLEEELSLEKIAAIACYSPFHFHRIFRSVVNESLNVYIVRKRIEK 69 Query: 62 SAV-ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPL 118 +A +R I ++++ Y F+ +F+RAFKK + +P+ +R S I Sbjct: 70 AASILIRKPGISITELSVMYGFNGNTSFSRAFKKYYGMSPSDFRAQAPGRHSKICIEERK 129 Query: 119 RLGEFTMPEH------------------KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR 160 T E + TL L ++ + Sbjct: 130 NGKGKTFFEPYFWDMDNHITWMEARALVEIKTLPQLELAYISHIG-----DQGQAHTFQK 184 Query: 161 YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 W G T L + ++ + L + + + + Sbjct: 185 LMEWAGQAGLLRTPDFTLLKIYHDSFRITASEQVRMSACIVLKEPVST--DGLVGTMTMP 242 Query: 221 GGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLR 280 G+ V+ E + ++ + + E Y + + + Sbjct: 243 SGKCVVARMELAMDEFGKAWTELF-VWLNRNGYKTTERNCFEIYG---NDPSTHPQHHFI 298 Query: 281 CELLIPI 287 +L IPI Sbjct: 299 VDLCIPI 305 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 100/303 (33%), Gaps = 27/303 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 +D + + ++ HLD SLD VA A S +H R+FK + G I + R R+ Sbjct: 8 LDYRKPVFKAMDYISQHLDDNPSLDEVATAAAISTFHFHRIFKTMVGETIAGFTRRLRME 67 Query: 61 KSAVALRLTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPP 117 ++A L + I +AL F S Q F +AF+ FA +P+ YR+ W + P Sbjct: 68 RAARRLLAAPQSDITTLALAAGFSSSQNFAKAFRLHFAMSPSEYRQQQGGNWKSKIGNDP 127 Query: 118 LRLGEFTMPEHKFVT-------------LEDTPLIGVTQSYSCSLEQISDFRHEMRYQFW 164 L + VT + + + + E ++ Sbjct: 128 LPFETYDGLVMHPVTEHQGLLQGASVKQMPARRVAYMRRMGPYGKETCEQAHRDLLAL-- 185 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 F + P L P + L + G + G Y Sbjct: 186 --FASDEAMTPAGTLSLYWDIPDITDETRCRTDICIELGPEIHAGR--QLTTQTIAAGPY 241 Query: 225 VMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 + + G + T +G + L+ E+Y+ D ++ Sbjct: 242 AVCQFIARGDQLVTTWETAFG-WLVSKGLSCDDRPCYEQYHAGTDPDRDH----YVFDIC 296 Query: 285 IPI 287 IP+ Sbjct: 297 IPL 299 >UniRef50_B5RA11 Putative transcriptional regulator n=35 Tax=Salmonella enterica RepID=B5RA11_SALG2 Length = 285 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 4/287 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + II +L +E +L++ + ++ + GYS+ LQ FK+ G +IG YIR R+LS Sbjct: 2 MMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLS 61 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +SA L+LT++ + DIA + FDS Q+++R KK F P YR++ W +RPP L Sbjct: 62 RSATLLKLTSQSVTDIAFRMGFDSVQSYSRELKKTFGVNPNNYRKADFWDLRNLRPPYWL 121 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + L + G S+ + + ++++ H+ L T +Y Sbjct: 122 DCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLR---TWGENVYC 178 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ +P KD V + + DG + +++ G+Y F + G Q+F Sbjct: 179 LSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSR-VIKCGKYAKFHFVGHKEQYQQFS 237 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 T+Y +P LNL RR+G+DIE ++ A K + IP+ Sbjct: 238 NTIYMCILPKLNLIRREGEDIEYFHLASVQKQQSNESIVDLYYYIPV 284 >UniRef50_A9KJ61 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=A9KJ61_CLOPH Length = 313 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 106/301 (35%), Gaps = 27/301 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + + ++E ++ + L+ A KA S++H R F + G + YIR R+L+ Sbjct: 20 MDYMDKVNNAIDFIEANITDDIDLNLAARKACCSEYHFLRTFSFLAGIPLSEYIRRRKLT 79 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L ++D+A +Y + S + F RAFK TP R + + L Sbjct: 80 LAAFDLFDG-VKVVDVASKYGYSSPEAFARAFKGLHGITPIAARNTDAPLKAYPKITFHL 138 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-----PT 173 L +++ + G+T E+ + + QFW + +GN Sbjct: 139 SLSGDGEIDYRIAQKNSYEVCGITIDVPILNEKTNT----VITQFWEENIGNGVIGQFHR 194 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMF-----T 228 + Y + + + Y + + + + +F T Sbjct: 195 DIGLEYNICLNAALFNYNKN-TFSYMICYEMP-SSRVHGEYSVLSVPSFTWAVFSTPEHT 252 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++ ++ P G + E ++ D E+ +PI Sbjct: 253 SKETTDIIRNMRKRIFMEWFPTSVYKHAGGPEFEIFHNKND--------KFVVEIWVPII 304 Query: 289 R 289 + Sbjct: 305 K 305 >UniRef50_C1I6N3 Transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I6N3_9CLOT Length = 288 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 29/299 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L ++E +L + + L +A +AGYS +H R+FK + G ++ Y+R RR + Sbjct: 4 MCYINSIKKALNYIENNLQEDIDLSAIAKEAGYSLYHFHRIFKGIVGDSMKDYVRKRRFT 63 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L T + I++I ++Y ++S++ F+RAF+K + + P+ RR + + IR P+ + Sbjct: 64 EAAKELVYTNKSIVEIGIKYGYESREGFSRAFEKVYGRNPSEVRR--DNLLYFIREPINV 121 Query: 121 GEFTMPEHKFVTLEDTPL-------IGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 ++ M + K T TPL V + + + + + +Q W++ + Sbjct: 122 -DYMMFQLKLTTEGLTPLYRNLSERYVVGKKWKVKADGSNLQDIPLLWQKWNNEKESEKI 180 Query: 174 IPPV----LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 I + G+ Y + + L+ Y +F Sbjct: 181 INRKCADEIMGICIFSQGNV------FDYMIGHEVNTMEYVPENMVIYRLEPSLYAVFRV 234 Query: 230 EGLG-TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G VQ+ +Y + R DIE YY L +L IPI Sbjct: 235 IGPITESVQKTWDYIYSVWLSESKYKHRNIDDIEYYYY--------TEGELVADLYIPI 285 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 106/299 (35%), Gaps = 22/299 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQP---LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 D I ++ + L +P +L+++AA A S +H R+++ +TG ++ ++ R Sbjct: 9 DYRRRIARVVEAI---LLEPGAHHTLESLAAVAHLSPFHFHRVYRALTGESVVETVQRLR 65 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI---- 114 L+++A L A + +A ++S Q F RAF+ +P+ ++ + A Sbjct: 66 LAQAAQRLTDAAASVTTVAHDAGYNSPQAFARAFRGFTGVSPSEFKARQKRLAAPCVGRA 125 Query: 115 ---RPPLRLGEFTMPEHKFVTLEDT-PLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 + P V L + P ++ + + I + Sbjct: 126 ADAQLAASKNNAPAPALPAVELTEIAPFDVLSLRHDGPVATIGQTFR----SLMTMLRCD 181 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 + G+ P+ A +D P+ L+GG Y + Sbjct: 182 ENAVMDQRVGICVRDPAVKDSFSYRA-AIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLI 240 Query: 231 GLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 G + +YG +P R + +E Y A +L+IPIR+ Sbjct: 241 GPYALISPTFRALYGGWLPQSGYLRDRRPALELYRLPLVAGLQQT---CVTDLMIPIRK 296 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 113/288 (39%), Gaps = 9/288 (3%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 +R LL LE + +PLS VAA YS ++ R+F+ V +IG YI+ L ++ Sbjct: 6 HIERLRSLLNLLENNFTKPLSSSEVAAATFYSYRNINRIFRAVFHKSIGRYIKELLLQEA 65 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA---FGIRPPLR 119 A L + + I DIA + + Q F +AF+++F +P+ +R+ + + P Sbjct: 66 ARRLAYSDKAITDIAFELNYSDLQAFNKAFRREFDCSPSQFRQQEKKDMKAWINTKLPEE 125 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + E + +L T ++ +T + + + I+D + + L T Sbjct: 126 IKELDRLTYSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLLKEDTH---YL 182 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 G KD+ L Q+ + ++ G+YV T++G + Sbjct: 183 GELMDDDEIVKDENCRYNAAITLPQEAVFEPTGFFNTKTIESGQYVCVTHQGDRNKLDTV 242 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + +E Y E +L E+ +P+ Sbjct: 243 YEQIFLHWIVKNEFEIVDKPFLEFYLNDE---TDTATKDLLTEIYVPV 287 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 120/293 (40%), Gaps = 21/293 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ + ++ HLD+ +S+++VA +SK++ R+FK TG +I A+I+ ++ Sbjct: 1 MITNKLVNQSIDYIMRHLDEEISIEDVADYCHFSKYYFSRVFKKETGESIYAFIKRLKME 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE----WSAFGIR 115 +SA+ L+ + I DI Y + S ++ AFKK +PA +R+S F Sbjct: 61 QSALNLKIEKDKSITDIGYDYGY-SPSNYSSAFKKHHNISPAEFRKSKNTTCVPHPFYQD 119 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 + F + + + E + + + Y + ++ ++ + + D+ + Sbjct: 120 KLAKFQSFEEYDQRILIQELDDFVVIYERYIGNYIELGKNWYDFTEK-YKDYFKEDTLLI 178 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 Y PS D+ + D + +QGG++ + ++GL Sbjct: 179 ERFY----DDPSITSLDQCLYDICMTV-----DKNCSLDNVTTIQGGKFALCRFDGLIQD 229 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + V+ +P + ++ Y +++ +L IPI+ Sbjct: 230 IFAAFQGVFNIWLPDSGYEMDERYGLDIYRAI-----DWESMHVVMDLCIPIK 277 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 216 bits (550), Expect = 8e-55, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 109/289 (37%), Gaps = 17/289 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Q +I + ++ HL L D ++ AG SK+H +R+FK + G ++G YI RL Sbjct: 107 QYELIIKVQEYINCHLFDDLDSDRLSQVAGISKFHFRRLFKAICGDSLGNYIFRLRLEYI 166 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR--L 120 A L T + ++ Q + ++ T +RAFK F + +R+ + + P++ L Sbjct: 167 AFKLISTDTSVPELLSQINYQNKHTLSRAFKSYFNCSIPEFRKKHSNARPEGKNPIQVEL 226 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 + + L+ ++ S+S +Q+ F P+ Sbjct: 227 SIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQFSEN----------YELPSKGCQYVS 276 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L P ++ + Q+ + GEY +F ++GL + Sbjct: 277 LTLDYPLITPEEHSRF--MVGVTLPQSFETPKGFGMYEISSGEYAIFRFKGLYHELNRVY 334 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Y +P + T R+ E Y + L + IP+ R Sbjct: 335 RHIYLDWLPTSDYTLREPFTFETYI---NTPEKTPASELITAIYIPVTR 380 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 20/295 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + ++E +L L + GYS R+F V+G+++ YIR R+++ Sbjct: 1 MDIMKSFNLAIDYIEDNLTDELDEKEITRITGYSFPMFSRIFSIVSGYSLSEYIRLRKMT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG-IRPPLR 119 +A+ L+ + + I+DIA++Y ++SQ +F AFK TP ++ ++ F I + Sbjct: 61 NAAIDLKNSDKRIIDIAIKYGYNSQDSFALAFKSFHKLTPGQVKKGEKYQYFSRIYFSIS 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + K + + G+ + S + W + P + Sbjct: 121 VQGGNQMDIKIEKKKAFKVAGIKSDVTKSSN---------FPKVWDRLVEKVPREKFEEF 171 Query: 180 G---LNETRPSQDKDDEQEVFYTTALA-QDQADGYVLTGHPVMLQGGEYVMFTYEGL-GT 234 G + D+E Y D+ L + + EY + + +G Sbjct: 172 GSGQIFGVGYDYIMDEEDSFIYLAGFDLTDEVKAKELGLDTLSIPEKEYAIVSLQGPIPK 231 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + P + D E Y + + EL +PI + Sbjct: 232 CIHEGWKYIISYFFPKEGYRHDESPDFEVYG-----DGDPNSEDYKMELWVPIVK 281 >UniRef50_C6CRD1 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=C6CRD1_PAESJ Length = 303 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 100/307 (32%), Gaps = 34/307 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L+ + + +A A S + QRMF V + YIR RRL+ Sbjct: 1 MDWLQRMNLAVEYIEDNLEHDIDYEQIARIALCSVYQFQRMFSFVLEIPLSEYIRRRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L+ + DIAL+Y +++ ++F+RAF+ TP R + R ++ Sbjct: 61 LAAFDLQDRKNKVTDIALKYGYETPESFSRAFQNLHGLTPTAARLAGSPLKAYPRLSFQI 120 Query: 121 --GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP--- 175 ++ V E + G+ Y ++ I++ + W + N Sbjct: 121 ILKGVAEMNYRIVEREAFQVFGLEDIY--GMDNIANQDGITIPEIWQNISKNGEFDRLFH 178 Query: 176 ------------PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 G S Y + + + Sbjct: 179 SLAGDWRAEGRFGKELGEVFAFDSYRFTSNTTFPYLIGCYKSAGSTI-EGYTVIDVPAST 237 Query: 224 YVMFTY------EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 + +F+ G ++ ++ + G + E Y Sbjct: 238 WAVFSTLNDGNGSGNYD-LRSLKNRIFSEWLQTSKYHIIDGGNFEMY-------CTHPSG 289 Query: 278 NLRCELL 284 + CEL Sbjct: 290 DEYCELW 296 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 80/301 (26%), Positives = 124/301 (41%), Gaps = 20/301 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q I+ L +E + PLS++ +A A S WH QR F + G +G YIR RR++ Sbjct: 22 MRQIQAIQTQLDRIESLITAPLSIEKLALDASMSYWHFQRTFTAMVGEPVGRYIRRRRIA 81 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ L +LD+AL Y+F+S + FTRAFK + + TP+ +R S R L Sbjct: 82 HAAMRLLDYESTLLDLALDYQFESHEAFTRAFKNELSVTPSDWRE-GRGSILYPRHREHL 140 Query: 121 GEFTMPE--------HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA- 171 + + + + V+L T G+ + + + W+ F A Sbjct: 141 TQAKLDQRYKNMRLLPEIVSLPSTTFAGLQSRFLSATSD-EANNMTVIPNLWNAFFERAS 199 Query: 172 ---PTIPPVLYGLNETRPSQDKD--DEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 V YGL+E + + E Y A D H GG + Sbjct: 200 ELQNLTEGVYYGLSENPEAINLARQHPDEAIYLAAAQVDPDAPVPEGMHSWNSVGGLFAK 259 Query: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 F ++G + E I +YG P R+G DI R+ P + N E+ +P Sbjct: 260 FEHQGPVDTLGETIAYIYGKWFPESEYKEREGPDINRFGPR----FIPQSENSLFEIFVP 315 Query: 287 I 287 I Sbjct: 316 I 316 >UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root RepID=Q187G0_CLOD6 Length = 288 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 14/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + +LE LD + V +GYS R+F +T + Y+R+RRL+ Sbjct: 1 MNIIKSFNSTIDYLETVLDDEIDEKKVTRISGYSYSMFSRLFSILTEMTLSEYLRSRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-SPEWSAFGIRPPLR 119 ++A+ LR T I+D+A ++ ++S +F AFK TP+ R P ++ L Sbjct: 61 EAAIILRDTDEKIIDVAFKFGYESSDSFGTAFKNFHGFTPSEVRIGKPFKLVSRVQLALS 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + + + + GV Q + + + ++ + H+ + N T + Sbjct: 121 VRGGRSMNIRIQKKKAFTVAGVNQQ-NINSSICASLWQKLFSKVSHEEMLNLGT--GEVV 177 Query: 180 GLNETRPSQDK---DDEQEVFYTTA-LAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GT 234 G+ S D D + Y + D + + + EY + G Sbjct: 178 GVCHDILSLDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPE 237 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + P D E YY + + EL IP+ + Sbjct: 238 CIHNGWKYAMEVFFPEHGYVHSGKPDFEYYYE-----GDMYSKDYKMELWIPVCK 287 >UniRef50_B9YCD3 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9YCD3_9FIRM Length = 310 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 19/297 (6%) Query: 2 DQAGIIRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 D I + ++E HL D+ L L+ V A GYSK+H R+F +TG + YI+ RR+S Sbjct: 21 DNREQISRAVDYIEEHLQDETLDLNAVTAAVGYSKYHWHRLFTALTGVPVHRYIQRRRMS 80 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L TA PIL IAL + +Q++F+R F+ + +P YRR + R L+ Sbjct: 81 EAARRLVFTADPILRIALDSGYQTQRSFSRQFQAVYHCSPKRYRRRKLYLPLQPRLELQN 140 Query: 121 GEFTMP-EHKFVTLED--TPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + K ++ L+G I ++ + + P Sbjct: 141 SQPDALRNFKIQIRDEGTITLVGYCAELRHGFGAIGRTWRKLHQ---NKSSIPGRSDPDF 197 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQ----DQADGYVLTGHPVMLQGGEYVMFTYEG-L 232 L G+++ + DQA + L YV+F Y+G Sbjct: 198 LIGVHDYTEFSNSQKGPMFTCWAGAQVELLDDQAQSVPKGMRRLTLPASRYVVFEYQGRC 257 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRK--GQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ I +Y P + + D+ RY + D + ++ IPI Sbjct: 258 QDSLEPVIELIYNQWFPSASCQLNENARYDLIRYGESVDEQGLSD-----IQIGIPI 309 >UniRef50_A6FJ46 Uncharacterized protein conserved in bacteria n=1 Tax=Moritella sp. PE36 RepID=A6FJ46_9GAMM Length = 312 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 123/308 (39%), Gaps = 29/308 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 ++ I LL ++ ++DQPLS++ +A K+ +S+W LQR+F TG + Y+R +LS Sbjct: 10 NRFTRIGKLLDFINENIDQPLSVEQLADKSCWSRWQLQRVFHHETGLNLAQYVRELKLSL 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L + ++DIAL F S+ +F+R FK FA +P Y G+R P++L Sbjct: 70 AAEQLLGSKSRVVDIALALGFSSEVSFSRTFKNMFAYSPMAY--RRRGKRLGLRTPIKLC 127 Query: 122 EFT---------MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 + + + T + L + S +++ ++ + W +F+ N P Sbjct: 128 SRVLDSFDLTARLLQIRIETRPEFTLHCTSGVISGLFSLEPNYQQQV-PKIWSEFIYNLP 186 Query: 173 TIPPVLY------------GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 + + DD + Y G + + Sbjct: 187 EVEKTSVLSEVSSKHMDIELIGVVGVIDANDDMNAIPYWAGSTAGALLGTTS-LDTIDVP 245 Query: 221 GGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLR 280 EY + + G +++ + ++ +P N G ++E Y D + Sbjct: 246 AQEYAVIPFTGPIKQLEQVLAWLFSHWIPDSNYDSVDGYELEIYPVNYDP----EDSSSY 301 Query: 281 CELLIPIR 288 E +PI Sbjct: 302 MEYWLPIE 309 >UniRef50_C7ILS3 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ILS3_9CLOT Length = 280 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 100/291 (34%), Gaps = 21/291 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E HL+ + ++ Q F +TG + Y+R R+L+ Sbjct: 1 MDWVDRMNQAIHYVEDHLNNKIDEKEISRITACPFSLFQGSFTQITGIPLSEYVRRRKLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR--PPL 118 +A L+ T ++D+AL+Y + S F+ AFK+ TP+ R+ F R L Sbjct: 61 CAAYDLQNTEEKVIDVALKYGYQSSDAFSVAFKRLHGITPSDARKDGVKLTFYCRLDFAL 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 + ++ + ++G+ ++ + + + + + G Sbjct: 121 IIKGVDRMDYTIIERTPFNVMGIRRTTPYGGGTWAIVKSDGSNEAIKETTGR-------- 172 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG--V 236 + ++ Y + D+ + ++ F +G + + Sbjct: 173 --FYDLGLCFSFGEDGSNDYMCGIEWDK--EPIEGLDIFKYPEATWLKFEAKGSISSQVL 228 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + MP + IE+Y D E+ IP+ Sbjct: 229 GSVWQRINNEFMPQSKYKKTGLPTIEKYVL-----WDDAADICNVEIWIPV 274 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 22/288 (7%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 + L ++ ++ PLSL +A +AG S H R+FK+ G + I++ RL K+A L Sbjct: 15 NALYYIYSNISAPLSLQELAKEAGVSAHHFHRIFKEEQGQNLYETIKSIRLQKAANLLLS 74 Query: 69 TARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM-- 125 I ++A + S +F +AFK +F TP +R + L M Sbjct: 75 NHYSTISEVAQLCGYSSSASFIKAFKGRFHLTPREWRHGGHRQ--YAKEILSTSSAAMAS 132 Query: 126 ------PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 E + + + + + I+ ++ + + + Sbjct: 133 QRSFLGLEPTIKKIPAFRAVYL--RHKGYNKSIALSWQKLMAWGFEHQISSQ----ARQI 186 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 G++ PS E Y AL ++ + +F +G V Sbjct: 187 GIHHDNPSITPLAECR--YIAALEVEEGFRAQGLLGVMEFPPTLCAVFEVQGRYGDVLGL 244 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 I VY +P + Y D N + + +P+ Sbjct: 245 IDYVYHEWLPQSGYEAKTIPAFALYQK---NHFLDPLGNFQLDFCLPV 289 >UniRef50_C6C946 Transcriptional regulator, AraC family n=3 Tax=Dickeya RepID=C6C946_DICDC Length = 313 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 130/288 (45%), Gaps = 12/288 (4%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 I DL+ W+E HL+ PL + +V AK+GYSKWHLQRMFK TG ++G YIR RRLS++AV L Sbjct: 12 IADLVGWIESHLESPLMISDVTAKSGYSKWHLQRMFKKETGISLGTYIRNRRLSQAAVEL 71 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 +LT++ I ++AL+Y FDSQQ+FTR FKK F +P YR+ W ++P LRL +P Sbjct: 72 KLTSQTIQEVALRYCFDSQQSFTRTFKKHFGTSPGHYRKQSSWDFSSLQPSLRLNVNAVP 131 Query: 127 EHKFV---TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 + V L L Q++D R W G + +Y + Sbjct: 132 VPEVVALPRLPANRCHFEYTQVVDDLVQVNDIAR--RPVLWEKACGRSHAADVSIYVSST 189 Query: 184 TRPSQDKDDEQ-EVFYTTALAQDQADGYVLTGHPVMLQGGE----YVMFTYEGLGTGVQE 238 P ++ Q V Y + + G Y+ F + G Q Sbjct: 190 VYPDDNRIKRQVRVNYDVGVITHAEELLADDDGIGE--QGTDVDSYLRFRFIGNLQEYQT 247 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 F+ +Y +P T+ D+E + IP Sbjct: 248 FLRAIYHHILPGRPYTKMGNNDVEIVRCRRKPDGAIDTSQFEVDYFIP 295 >UniRef50_C0Z5D7 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5D7_BREBN Length = 285 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 16/292 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I L ++E L + ++LD VA+ AGYSK+H QR+F VTG +G YI RRL+ Sbjct: 1 MNYMEQITYALSFIEKQLTEKVTLDEVASAAGYSKYHFQRLFFHVTGETVGQYISKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A AL L + + ++A Y FDS + FTRAF K+F P+ RRS + + + L Sbjct: 61 EAAKALSLEQKSVTEVAFTYGFDSHEAFTRAFTKRFGLPPSALRRSGKMPRYMM-----L 115 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQI--SDFRHEMRYQFWHDFLGNAPTIPP-V 177 +P + + + V + +L F W P Sbjct: 116 ERMELPYLENIQRQSIEPFYVPADEALNLAGYYSPSFSVRDITGCWSRLGQQVGWQPTQK 175 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 YG+ E Y +L + + + + L Y++F ++G ++ Sbjct: 176 RYGILRYPD--TFGLELSFTYFASLPASEQA-DIDSLESLTLPASSYLVFPHKGSVQNLK 232 Query: 238 EFILTVYGTCMPMLNL--TRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +YG+ M + D E Y G+ + C + IP+ Sbjct: 233 LTYQYIYGSWMAHASESDQLYARYDFEYYDHR---FLGNDHPDSLCFIYIPV 281 >UniRef50_C5RQY0 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQY0_CLOCL Length = 286 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 22/298 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E H+ ++L +V+ YS +H R+F + + YIR R+L+ Sbjct: 1 MDLLTQLNLAMDYIEEHICDDIALADVSEVTTYSSYHFGRLFYYIAEMPLSEYIRKRKLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--IRPPL 118 +A+ L+ ++D+A++Y +D+ +FTRAF +Q TP + R++ + + Sbjct: 61 LAAMELQSNDVKVIDLAVKYGYDNADSFTRAFVRQHGVTPTVGRQTGVMLKIFTPLTFQI 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSY-SCSLEQISDFRHEMR--YQFWHDFLGNAPTIP 175 ++ + E+ + G+ + + + + +I DF E + + F Sbjct: 121 KIKGVQEMNWRIEQKEEFEIFGIERIFRNDDVGKIPDFWTECQNNGSYERLFEDAGGNRG 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 + + D E Y A+ + + + + +F +GL Sbjct: 181 GKDACVINAICGHIEPDANEFPYML-FAEKKEGCRIDGYKTAKISKHTWAVFRLDGLKDH 239 Query: 236 ----VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E Y +P + KG D+E Y + E+ IP+ R Sbjct: 240 DDCKIPELFQRAYSEWLPSSGYDKAKGPDMEIYGDDFE------------EVWIPVVR 285 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 8/278 (2%) Query: 14 LEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPI 73 +E L++ + L+ +A GYS WH R FK V I YI+ RL K+A L+++ PI Sbjct: 17 IEEQLEKEIGLNQIAFLTGYSDWHFHRFFKSVQKENIKTYIKRLRLEKAAYELKISNFPI 76 Query: 74 LDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTL 133 L+I ++ F S + FT+AFK+ TP+ +R+ + + + +H F Sbjct: 77 LEIGMEAGFSSHEAFTKAFKRVIGITPSEFRKKHQIKMKDLSLSQLSLPSGLTKHSFQKK 136 Query: 134 E--DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG-NAPTIPPVLYGLNETRPSQDK 190 ++ + S L + Q F + G+++ P Sbjct: 137 TISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVTC 196 Query: 191 DDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM 250 D +++ + GG Y+ Y G + + + Sbjct: 197 KDNIRFDLGFTISEKFPS-PPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYCIV 255 Query: 251 LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 L + E Y P ++ IP+ Sbjct: 256 SKLKLKNNPPWECYLN----PFEPIPDKRITDIYIPLE 289 >UniRef50_C5EKR4 AraC-family transcriptional regulator n=2 Tax=Clostridiales RepID=C5EKR4_9FIRM Length = 295 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 120/296 (40%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHL---DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 M+ ++ ++ +E HL ++P+ + ++ AG S Q++F + G YIR R Sbjct: 1 MEWNEKLQLIIDHVEHHLQAREEPVDREEISRIAGCSFDFFQKVFSYMNGMGFAEYIRFR 60 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 +L+ + L+ T I+DI+ +Y ++S +FT+AF++ P R + + P Sbjct: 61 KLTLAGYDLKSTDMKIVDISYKYGYNSPTSFTKAFQQFHGIPPKEAREN--EVKLRVMPK 118 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCS----LEQISDFRHEMRYQFWHDFLGNAPT 173 L++ + + LIG T SC+ E+I F +E + + L + T Sbjct: 119 LQIAQRRQFSWQVQRKAGFRLIGKTIRVSCADGEHYEKIPGFWNECQKDGTYPVLRSLDT 178 Query: 174 IPPV-LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 ++GL S D E+ Y+ + D++ + L + +F G Sbjct: 179 GAQKGMFGLF----SLCGGDMDEIEYSIMVISDKS--LPPGLTGLELPEQTWAVFDCRGP 232 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +QE + G + ++E Y + + ++ IP+ Sbjct: 233 VPKAIQEGWKYLNGEWLVRYPFRHAPCPELEWY-----SDGNPYGEDYLSQIWIPV 283 >UniRef50_B6GD23 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD23_9ACTN Length = 305 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 109/299 (36%), Gaps = 22/299 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + + ++E HLD + + A A S+ +RMF V G + YIR RRLS Sbjct: 11 MGWIEGLNASMEYIEKHLDDDIDVVEAARLATCSEGQFRRMFSYVAGVGLTEYIRRRRLS 70 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+AL R ++D+A++ + S FTRAF++ F +P+ RR + L Sbjct: 71 CAALALSRGER-VIDVAIRCGYASSTAFTRAFREAFGVSPSDARRPGTTLCVFPQLTFSL 129 Query: 121 G--EFTMPEHKFVTLEDTPLIGVTQSY----SCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + VT ++ LIG+ L Q++D E FW Sbjct: 130 AVVGSEPLSWRIVTHDEMRLIGIAFPCDAAMDAPLIQMADEGREELRHFWGSASQAGD-- 187 Query: 175 PPVLYGLNETRP-----SQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 L+ L + + ++ Y A++ + + + G + +F Sbjct: 188 IERLFSLADDGGPRRIFGVNSVRRGDLTYHIAVSSS--EEAPAWTDEIRVSRGSWAVFEC 245 Query: 230 EGLGT-GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G E +Y +P +E Y R E+ IP+ Sbjct: 246 VGPCEVATAEHYHRIYAEWLPASGYELAHDVSLEVY-----PSGDFSSTGYRSEIWIPV 299 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 101/288 (35%), Gaps = 13/288 (4%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I ++L + L+ S++ +A+ S +H R+FK+ G ++ AY++ +L Sbjct: 10 DHLERINEVLFRIHSDLEHNGSVEELASLVAMSVFHFNRVFKERVGESVHAYVKRVKLEH 69 Query: 62 SAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L + I F S +FT+AFK+ F TP +R + Sbjct: 70 AANLLLFNPSATITHCMQAVGFSSNASFTQAFKENFGVTPTKWRE---VDKANEKRDFTF 126 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 E ++ K T+ + V + I ++ Q W G + Sbjct: 127 SEKSL-HVKIQTMPSFDVAYV--RHKGYDRTIQQAWLKL--QAWALGHG-VDFSDQRMIA 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ + P + + L + + + + +F+ +G+ +++++ Sbjct: 181 LHHSNPRFVESSQCHYVACLELPKGREFYRSGDIGVMRIPQTFCAVFSLKGVYGDLKKYM 240 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y P + Y + + +P+R Sbjct: 241 DVIYHEWFPQSAYEKIALPSFAIYRE---NHFINADERFDLDFCVPVR 285 >UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales RepID=B8HE83_ARTCA Length = 288 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 106/293 (36%), Gaps = 14/293 (4%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 ++ ++ +E HL + + + N+A G +++H++RMF + G + YIR RR++ +A Sbjct: 2 IAVLNRVIDSIEEHLTEEIEVANLAGGLGTTEYHVRRMFSSLAGMPLSEYIRRRRMTVAA 61 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--PEWSAFGIRPPLRLG 121 + +L A+++ + S + F RAF+ +PA RR+ P + +R L + Sbjct: 62 ADVI-GDGDLLGTAVRFGYGSTEAFGRAFRAVHGISPADARRNGGPLRTQPQLRFRLTIE 120 Query: 122 EFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 T + + L+G + I + T P Sbjct: 121 GNTTMDTRIADRPAFRLVGHAARVPLIHQGPNPHIQAHIASLPAAEHARLKALCNTEPAG 180 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG-TGV 236 L ++ D + ++ Y +A + + + G + +F G + Sbjct: 181 LLQVSADV-DPDYAEGSDLTYLHGVAVSEGTPVPEDLDAIEVPAGAWAVFRTSGAYPAAL 239 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 Q P R G + D + EL +P+ R Sbjct: 240 QSTWAATAAHWFPSNPWRLRPGPSVVAILDRADDFSTAT-----TELWLPVER 287 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 112/292 (38%), Gaps = 15/292 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I+ +L++++ +L + L L VA KAG S +H RMFK+V G + Y+ +L K+ Sbjct: 19 NLEIVIPILVYIQANLHEDLDLKVVAKKAGLSPFHFHRMFKNVVGETLKQYVLRIKLEKA 78 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI--RPPLRL 120 A AL+ IL I+ + F + ++FTRAFK++F TP YR+ + R Sbjct: 79 AFALKYWDEKILSISNELGFKNPESFTRAFKREFQYTPKDYRQQFRKGELSLEERHSFLN 138 Query: 121 GEFTMPEHKFVTLE---DTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + E VTL+ + + + F +++ N Sbjct: 139 QMTNVFEISPVTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYRN----DCF 194 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT-GV 236 L G+ P+ + + DQ L+GG++ TY G + Sbjct: 195 LLGVGHDAPTITPKELLRFD--CCIEVDQPFHSEGKISYQQLEGGQFATVTYVGPYGMNM 252 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + +Y N+ +E Y + ++ +PIR Sbjct: 253 KHAYQKLYQEIQHNKNIEFVGLPVVEIYRTTTINPSYKLNQ---TDIYVPIR 301 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 103/293 (35%), Gaps = 17/293 (5%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 ++ L ++E +LD+ LS+++++ + G S+ HL R FK G ++ I RL ++A Sbjct: 3 EKLKAALNYIESNLDKSLSIESISTQVGMSQSHLHRKFKAELGLSLYELIILLRLKRAAY 62 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP------- 117 L ++DIA + + S Q FTRAF+K F Q P+ +R+ W + + Sbjct: 63 QLAYRQTKVIDIAFEAHYKSHQAFTRAFQKVFKQAPSAFRKRANWFFWQQKYDPFLALRK 122 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + + + T + + + +T + R + W P Sbjct: 123 INMNDNTCFNVELIEFHTLSIAYLTHKGHPNQ----LHRSIQTFIDWRRARA-LPPHKSR 177 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADG--YVLTGHPVMLQGGEYVMFTYEGLGTG 235 + L P + + ++ + + G Y Y+G Sbjct: 178 TFNLLYHDPKRVEPEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQ 237 Query: 236 VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + I ++ + R D + ++ + + Sbjct: 238 LDQAIYYLFNLWLEQSGEKLR---DFPLFIERVSFFPDVAANKAISDIYLALE 287 >UniRef50_A8GJ26 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GJ26_SERP5 Length = 288 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 94/290 (32%), Positives = 153/290 (52%), Gaps = 9/290 (3%) Query: 1 MD-QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M+ Q IR+LL+W+E +L PLSLD V+AK+GYSKW+LQRMFK TG ++ +YIRARRL Sbjct: 1 METQENHIRELLVWIEDNLTNPLSLDIVSAKSGYSKWYLQRMFKTQTGLSLASYIRARRL 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 +A ALR T + ILDI+++Y+FD+QQTF+R FKK FA++P++YR + + + L Sbjct: 61 YLAAFALRFTQKTILDISIEYQFDNQQTFSRCFKKHFAESPSVYRHARKQDFSHLVRSLS 120 Query: 120 LGEFTMPEH-KF-VTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + + V + G + +Y + + +R + F + + P + Sbjct: 121 ANHPGDIQVDRIKVAKGQYAIKGKSYAYHLDIADLDKSHLHIRSKIREQFYQSVASRPAL 180 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 Y L + P ++ V Y +A+D V P G+Y F Y G + Sbjct: 181 TYALTQFIPDG---EQVRVEYALGVAEDCPTSDVAGLEPWPEIHGDYCRFCYSGKPVALH 237 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + ++ +Y +P L L RR G D+ + + + + + L + L+P+ Sbjct: 238 DHVVQIYTQALPELGLARRVGPDLTMFNYSLNER---EELQLELQHLVPV 284 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 18/284 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + L+ +E L++ L+L ++ + S H+ R+F+ TG +I +Y+RARRLS +A + Sbjct: 4 LDKLIWQIETDLNKDLTLTVLSDRCAISTHHMCRLFQLSTGLSIMSYVRARRLSMAADTI 63 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 IL AL + S + FTRAF F P+ R++ S+ + PL++ Sbjct: 64 ARHDGDILTAALDAGYGSHEAFTRAFANYFNALPSTVRKARSTSSLDLMEPLKMKNDMFV 123 Query: 127 EHKFVTL---EDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 E + + + ++G++ S + W F + V+ G Sbjct: 124 EVQPPEMRRADAFMVVGLSTP-------CSLENNSTIPALWQRFNLRESEVEEVVSGAAY 176 Query: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 D+ Y + +A + L Y +FT+ G + + + T+ Sbjct: 177 -GVCSAADEAGNCTYLAGV---KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTVYTI 232 Query: 244 YGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + +P L D ERY D + E+ IP+ Sbjct: 233 WNKALPEAGLKTADSPDFERY----DQRFNPETGRGSVEIWIPV 272 >UniRef50_C4L2T4 Transcriptional regulator, AraC family n=25 Tax=Bacilli RepID=C4L2T4_EXISA Length = 291 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 108/290 (37%), Gaps = 14/290 (4%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + +L+ ++E HL + L + G S H +RMF ++G + YIR RR S + Sbjct: 3 KALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIANE 62 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP-EWSAFGIRPPLRLGEF 123 L + + +IA Y + S + F+RAF+ P+ ++ + S + + Sbjct: 63 KLVHGS-SVTEIAYLYGYQSVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKGG 121 Query: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI----PPVLY 179 T E K E ++GV++ E +++ E+ + + + P Sbjct: 122 TSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKSITEEQRAHMHELGNLYPHRAL 181 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQE 238 + ++E + + A + Y + + + +F G +QE Sbjct: 182 NASFNFDDGHLEEEGYLTHMIGFATTREIKY-DDLEVISIPKSLWAIFPNTGPFPNTLQE 240 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + Y +P + I +K N+ E+ +P++ Sbjct: 241 TMARTYAEWLPSSGYALQDLPSI------SFSKIETGYDNVYSEVWVPVK 284 >UniRef50_B0MC81 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MC81_9FIRM Length = 288 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 113/296 (38%), Gaps = 22/296 (7%) Query: 1 MDQAGIIRDLLIWLEGHLD---QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 M+ ++ ++ ++E HL +P+ ++ A S Q++F + G + Y+R+R Sbjct: 1 MEWNEKLQMIIDYIEHHLQRVQEPIDPGEISKIAECSFGFFQKVFSYMNGISFAEYVRSR 60 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 +L+ + L+ T + ++D++ Y +DS +FTRAF++ +P R S + + P Sbjct: 61 KLTLAGYDLKSTDQRVVDVSYLYGYDSPTSFTRAFQQFHGVSPKEARISK--TKLKVVPK 118 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHD-----FLGNAP 172 +++ + LIG + + C E+ E + + + Sbjct: 119 MQVSVKQEYTWRVEQKPAFRLIGKSIRFFCDDEEKPSKILEFWSECQRNGVFSCLISMDK 178 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL 232 PP L+GL ++ E+ Y+ A D ++ + +F G Sbjct: 179 GEPPGLFGLFHN----VEESRNEMQYSIMAAAD--GEVPEGYGEFLIPETSWAVFDLSGP 232 Query: 233 -GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + K ++E Y + N ++ IPI Sbjct: 233 VPQAIHSGWKYLEEEWLVKYPFRHAKCPELEWY-----SSGNFYDKNYLSQIWIPI 283 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 203 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 100/327 (30%), Gaps = 56/327 (17%) Query: 2 DQAGIIRDLLIWLEGHLDQP---LSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 D I ++ + L +P +LD++AA A S +H R+++ V G ++ ++ R Sbjct: 9 DYRRRIARVVEAI---LVEPGARHTLDSLAAIAHMSPYHFHRIYRAVMGESVVDTVKRLR 65 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 L+++A L A+ I +A +DS Q F RAF+ +P+ +R Sbjct: 66 LAEAAQRLTDAAQ-ITAVAHDAGYDSPQAFARAFRDFTGVSPSEFRTRQRHLVVNPAASE 124 Query: 119 ---------------------RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRH 157 +P + V L + + Q + + I+ Sbjct: 125 ASVGRRRTAQACAAQRGDGDESEQVPALPSVEVVELAPLDV--LCQRHDGPVGTIAQTFR 182 Query: 158 EMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQA---------- 207 + N G+ A A Sbjct: 183 TL----MTTLRCNQNPQLQQRVGICGRD--ATVASGFRYHAGIIAASQTAFSRAIERLDE 236 Query: 208 -------DGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQD 260 P+ L+GG Y + G + +Y +P R + Sbjct: 237 SAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPYELISPTFRALYSGWLPRSGYRRDQRPG 296 Query: 261 IERYYPAEDAKAGDRPINLRCELLIPI 287 +E Y D A +LLIPI Sbjct: 297 LELYRSLPDRGALQP---CITDLLIPI 320 >UniRef50_C2HEQ6 AraC family transcriptional regulator DNA-binding subunit n=13 Tax=Bacilli RepID=C2HEQ6_ENTFC Length = 298 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 115/294 (39%), Gaps = 14/294 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ + L+ ++E HL + L+ +A G S++ L+R+F + G ++ YI+ RRL+ Sbjct: 10 INMLKDLNQLIDYIEEHLTESLTYKKIAENTGISEYQLKRIFTFIAGMSLMDYIKNRRLA 69 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALY-RRSPEWSAFGIRPPLR 119 + L + + A +Y +++ + F+RAF+ P+ R + S + + Sbjct: 70 LANRDLL-GGEKVTETAFRYGYETVEGFSRAFRDWSGYLPSEISRYGIQKSFPRLTFFID 128 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF----WHDFLGNAPTIP 175 + E + E ++GV + E ++ ++ + P Sbjct: 129 VRGGKSMEFRIEKKEQFYVVGVAKKVPVQFEGVNQEIQKLVQTITETQREEMHKLGDLYP 188 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GT 234 + ++ +++ + + A + + + ++ + +F +G Sbjct: 189 HQVINVSYGFDGDRLEEKGSLMHMIGFATTK-ENPYADLEMLAIEEHTWAIFPNKGPFPQ 247 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Q+ +Y +P + + +I K G+ ++ E+ I ++ Sbjct: 248 TLQDTWGKIYAEWLPSSDYELVEAPEI------SFTKWGEDFSHVYSEIWIAVK 295 >UniRef50_C8QBQ6 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8QBQ6_9ENTR Length = 288 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 82/286 (28%), Positives = 133/286 (46%), Gaps = 8/286 (2%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + I DL+ W+E +L L++D ++ K+GYSKWH+QRMFK++TG + +Y R RRL+ S Sbjct: 7 KKQYINDLVDWIEANLTDELNIDLISLKSGYSKWHMQRMFKEMTGQTLASYTRKRRLTMS 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ALRLT P++DIA+++ FD+QQ FTR FK F+ TP YRR PE + Sbjct: 67 AMALRLTRMPLIDIAVRFGFDNQQNFTRVFKNHFSLTPGAYRRIPELQLKDFHSRIPTQH 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + + + L G + C + ++ Q DF+ A + Sbjct: 127 RWV-DVRLAEKPELRLCGEVIEWECRFGEYIHDHGDVVAQHARDFVAFAGQHVNKGWLGF 185 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 + P + D+Q + AL D + G Y ++G + F Sbjct: 186 QFSPGEGSADQQHISLFQALESQHGDVLPSNVVNWTGESGLYAEIDWQGAPEQINAFTAD 245 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC-ELLIPI 287 +Y +P L + RR+G+D+ + +L IP+ Sbjct: 246 MYYIHLPALGVARREGKDL------LRLDLQNSTPDLLTGTFFIPV 285 >UniRef50_A9KR86 Transcriptional regulator, AraC family n=21 Tax=Clostridiales RepID=A9KR86_CLOPH Length = 298 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 108/306 (35%), Gaps = 32/306 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 ++ I + ++E H+ + ++++ VA++ GYS +H R+F G ++ YIR RRLS Sbjct: 5 LNYREDIETCVEYIEEHIKENITMEEVASQIGYSLYHFSRVFSLCKGISVMEYIRNRRLS 64 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L R I+DIA Y F++ F +F+ F +P + + + + + Sbjct: 65 LAATQLFQG-RKIIDIAFDYEFETPSGFANSFRNAFGYSPTQFMKRMAG-YAETKTTVEI 122 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 G + V + + G Y D + FW ++ G + +Y Sbjct: 123 GGYI-MNPAIVKRPEFMVAG----YGIKTNITGDAYTKDVASFWSNYDGE--NLESKMYK 175 Query: 181 L------NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY----- 229 + E ++ Y + + V++ Y +FT Sbjct: 176 ILNPKKHGEVGLCVPLSEDGNAIYLLGVIVEDFSKVEEDMLTVVVPEAVYAVFTTPPVDT 235 Query: 230 ------EGLGTGVQEFILTVYGTCMPMLNLTRRKGQ-DIERYYPAEDAKAGDRPINLRCE 282 + + ++ + + D E Y + + Sbjct: 236 TKDMEQKEFAKIIASTWKYIFEEWFKDSGYVYDESKLDFEYYDERC-----HHRQDTVMD 290 Query: 283 LLIPIR 288 + +P++ Sbjct: 291 IYVPVK 296 >UniRef50_Q2NSQ1 Putative right origin-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ1_SODGM Length = 201 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 118/182 (64%), Positives = 142/182 (78%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MDQAGII+DLL WLEGHLD PL+L+ VA ++GYSKWHLQR FK TG AIGAYIRARRLS Sbjct: 1 MDQAGIIQDLLSWLEGHLDTPLTLNRVAERSGYSKWHLQRKFKLATGQAIGAYIRARRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++ +ALRLT+R + DIALQY FDSQQTFTR FKKQF QTPALYRRS +W G+ PP R Sbjct: 61 RAVLALRLTSRSVADIALQYGFDSQQTFTRPFKKQFIQTPALYRRSRKWHFLGMYPPYRF 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ +FVTL+ LIG +QSY+C+LEQ+S++R +R FW FL PT PPVLYG Sbjct: 121 DSRPLPQAEFVTLQVMTLIGTSQSYTCTLEQLSEYRTNLRSHFWRQFLAAMPTKPPVLYG 180 Query: 181 LN 182 L+ Sbjct: 181 LS 182 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 113/282 (40%), Gaps = 20/282 (7%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 L ++E H D PL+L ++AA AG S +HL R+F+ TG ++ Y+R RRLS +A L Sbjct: 16 KALWYIETHADSPLALADIAAAAGLSPFHLSRLFQARTGTSVVRYLRGRRLSAAAQRLAE 75 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT---M 125 A IL +AL + + FTRAF +QF QTP R + +R+ + Sbjct: 76 GAGDILPVALSAGYTTHAAFTRAFCEQFGQTPERVREHGI-DGLALVQAIRVDDAPAACT 134 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 + + + G+ ++ W P P+ +G+ Sbjct: 135 EAPRLLDTPAFQVAGIGMRHTRDSGG-------AIPGQWAQLNREWPAPAPISFGVC--- 184 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 + DDE Y AL V + Y++ + G + ++ + Sbjct: 185 --CNSDDEGGFDYIAALPASALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLD 242 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P L+ D+ERY D + + N E+ +P+ Sbjct: 243 QYLPGTGLSLADAPDLERY----DTRFDEHTGNGGVEIWLPV 280 >UniRef50_C3LC07 Transcriptional regulator, AraC family n=7 Tax=Bacillus RepID=C3LC07_BACAC Length = 296 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 19/258 (7%) Query: 1 MD-QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M+ I+ + ++E + + +L N+A AG+S+ H R+F+ + G + Y+R RRL Sbjct: 1 MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG------ 113 +++A L T I+DIA ++ F S +TFTRAFKK F TP+ YR+ + Sbjct: 61 ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK 120 Query: 114 IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYS----CSLEQISDFRHEMRYQFWHDFLG 169 R E++ V + + G + + + I F E + + Sbjct: 121 QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP 180 Query: 170 NAPTIPP-VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 N V GL + + Y + + Y +FT Sbjct: 181 NRKDTSQWVELGLCTDFNLET----GDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFT 236 Query: 229 YEGLGTGVQEFILTVYGT 246 + + ++ Sbjct: 237 RR---KFLMKKWYRLFTK 251 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 109/288 (37%), Gaps = 18/288 (6%) Query: 8 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR 67 D++ ++ ++D +++D + + SK+HL R+FK+ G I I++ RL K+A L Sbjct: 14 NDVMNYIYKYIDTNINIDELCLELKISKFHLHRIFKEEFGKNIYESIKSIRLEKAANLLI 73 Query: 68 LTARP-ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG----- 121 I DIA + SQ +F R+FK++F TP + ++ + + + ++ Sbjct: 74 TNRYSTITDIAKMTGYSSQTSFLRSFKQRFLMTPKEW-KNGGYKEYSNKIVEKISTNSQA 132 Query: 122 -EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +F+ E V + + G + + I +++ + + + + Sbjct: 133 IDFSNIEPSIVKMPEIK--GYYIRHKGYDKSIKKTWQKLQTWIYTNDIKEYKQM-----A 185 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 L+ P ++ + L + +++ G Y F+ G V + I Sbjct: 186 LHHDNPIITPLEDCQYIAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLI 245 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VY T + Y+ + +PIR Sbjct: 246 QWVYHTWLIESGYETTPNPSYTIYHK---NHFLSDDGEFILDYYLPIR 290 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 200 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 114/291 (39%), Gaps = 24/291 (8%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ +L PL LD +A + S+ L R+ K ++ AY+ +R+ ++ Sbjct: 9 YQRKINQVIDYINANLHLPLRLDIIAGQVNVSERQLLRIMKGALNESLYAYVARQRVERA 68 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 + + + D+A + +D+ Q+F++AFKKQF+ +P Y + Sbjct: 69 VLYMHTEDMSLADLASRVGYDNPQSFSKAFKKQFSVSPKAYMDKLRARLREETE--KWSN 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT-----IPPV 177 E + ++D L+ + E + W+ +G Sbjct: 127 PHDLEVEVCEVDDLDLVYIRIFGKYG-------EAEPYEEAWNLLIGFLKENQALSEDTR 179 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 GL+ P+ D+ + ++ ++ + LQ G+Y ++T +G G+Q Sbjct: 180 FIGLSFDDPNVTHPDQCRFYACASVGKEII--PSGMFGTIRLQKGKYAVYTLKGSYAGLQ 237 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 E T+ N T+R G E Y + + ++ IPI+ Sbjct: 238 ELYNTINIDF----NYTKRHGMAFEEYVSYSEEDDDTQ----VTKIYIPIK 280 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 196 bits (498), Expect = 8e-49, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 95/291 (32%), Gaps = 20/291 (6%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D ++ ++ +LE + +QPL+L VAAKA S +H R+FK VT + Y+R RL + Sbjct: 4 DYLQRLKPVIRYLEQNFNQPLNLPEVAAKANISPYHFHRIFKAVTNETLAEYLRRLRLER 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 A L I ++AL+ F S Q+ +AFK++F TP+ R Sbjct: 64 IATDLFYKQVSITELALENGFSSSQSLAKAFKQRFGLTPSELRECESNEKLCQLMRNSKI 123 Query: 122 EFTMPEHKFVTLEDTPLIG-------------VTQSYSCSLEQISDFRHEMRYQFWHDFL 168 T+ +TP G ++ + + +++ + + Sbjct: 124 GHTLRNIGNANQSETPYHGDIDQQRRVTMETTTIEAGTLAYIRVTGPYGQGYEEAMKHLC 183 Query: 169 ---GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYV 225 G + P D++ + D + GG Y Sbjct: 184 TWAGAKGFSCENAIFIYHDNPEITPDEKCRTDICFRVPADTQASGRVELQVF--PGGSYA 241 Query: 226 MFT-YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDR 275 + + + L + E Y+ + Sbjct: 242 YIRQTVKQMNEYGQAWSEL-MKLVVDTGLESDERPCFELYHSFDPQTYVSD 291 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 104/286 (36%), Gaps = 17/286 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + + L ++E + DQ +S++ + + YS ++QR+F+ G IGAY + R+ + Sbjct: 8 NLNCVYNTLSFIEKNYDQLISIEQLEDISHYSYRNIQRIFRYTCGETIGAYQKRLRVENA 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 L + I IAL+ F + +F++AFK+ F +P R L + Sbjct: 68 YKILLYSDHSISAIALKVGFSNVASFSKAFKQHFLISPKEARAGKTPLFMKADI-LPVEA 126 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNA-PTIPPVLYGL 181 + + + + + T + + + +I W FL N P YG+ Sbjct: 127 TQILQPQIIYVRPTTVYYRSSFINYIDTEIESQ--------WDTFLQNEFPEQGNDFYGI 178 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P ++ + GG+Y FT+ G +++ Sbjct: 179 VADEPLIRENLNCRYDTC-----SSLQSLTSRLPSKTIGGGKYAQFTHYGRYETIEDTYS 233 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y + L IE+Y D D + +P+ Sbjct: 234 QIYSGWILTAGLRFSHTPVIEKYTRHPDN--TDSVEEQITYIWLPL 277 >UniRef50_Q47QG5 Transcriptional regulator, AraC family n=17 Tax=Actinomycetales RepID=Q47QG5_THEFY Length = 300 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 102/295 (34%), Gaps = 17/295 (5%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 + + ++E HLDQ + +A A S++H++R+F + G + YIR RRL+ + Sbjct: 11 LDRLNQAMEYIERHLDQRIEGAELAQIAATSEYHMRRLFSALAGMPLSEYIRRRRLTVAG 70 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL--G 121 + R +LDIA++Y + S + F RAF+ P RR+ R RL Sbjct: 71 AEVLAGDRTLLDIAVRYGYGSAEAFARAFRAMHGVGPGEARRTGAPLRSQPRMSFRLVVE 130 Query: 122 EFTMPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 T ++ V + ++G Y I +F + + P Sbjct: 131 GSTDMRYRIVEKDAFQVVGKKARVPLVYEGPNPAIVEFVRSIDPGTLQRLAELSDQEPRG 190 Query: 178 LYGLNETRPS--QDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG-LGT 234 + + E+ Y + + + G + +F EG Sbjct: 191 VVAAVANIAGERVSAPEGTELDYYHGVVTSAPA--PEDMAVLPVAAGLWAVFEVEGEAPY 248 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q V+ P G ++ + EL +P+ R Sbjct: 249 AIQYLWRDVFTQWFPANPYQSVPGPEL------LRTTMSQDGAYVEAELWVPVER 297 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 102/287 (35%), Gaps = 33/287 (11%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 L +LE H + L +A AG S WH R+++DV G + ++ RL ++ Sbjct: 6 YEQRFLRALHYLENHYTDSIDLQRIADAAGLSPWHWHRLYRDVMGETLHTTVKWMRLHRA 65 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A + T +P DIA + +++ Q+F R+F+ + +P YR P Sbjct: 66 AWLISYTDKPFADIARECGYNNAQSFARSFRDAYGLSPQQYRERPPPRYP---------- 115 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 T + + S C +++ D +++ L A T + ++ Sbjct: 116 -----VHLETRAPVTVAMLAHSGEC--QRLGDTFYQLESLL---RLRGAETSQARAFSIH 165 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 P+ D + ++A + A + GG Y + + G + Sbjct: 166 ---PAIDPLHADK-HVAASVAPEYAMAP---LQAGEIAGGRYAVLRHRGPYADLDSVYDW 218 Query: 243 VYGTCMPMLNLTRR-KGQDI-ERYYPAEDAKAGDRPINLRCELLIPI 287 P I E Y P+ D + R ++ IP+ Sbjct: 219 FVQEWFPAAGQHIASDRPVILEYYDPSSDIPVQQK----RVDICIPL 261 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 12/261 (4%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I + +E ++P L+ +AA A S QR F++ G + G Y+R RL ++A+ Sbjct: 53 RIVKAIRLIESTTEEPFPLERIAAHANLSASRFQRRFQEAMGESPGEYLRRTRLDRAAIF 112 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L ++ +L IAL + S + F RAF +QF P YR+ ++ + P E + Sbjct: 113 LIISQESVLSIALSTGYASHEAFIRAFHRQFGLVPTQYRQFARRASTPLAP---EDEPRV 169 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 + + + P+ + + S + D P G+ + Sbjct: 170 AQVRVESFPSQPV--LAMRFYGSYALVEDNWRRFAECLDRAGF---PLADAQAVGIVQDN 224 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 P +D Y A+ D ++L + + + + T+ Sbjct: 225 PEITPNDLVR--YDCAIVDAGFDREHPALSRLILPAARFACLEHRAPYSHIFPVYRTIGS 282 Query: 246 TCMPMLNLTRRKG--QDIERY 264 P G +ERY Sbjct: 283 VWGPRSGECFGAGGTGTLERY 303 >UniRef50_A9MRK1 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MRK1_SALAR Length = 286 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 121/289 (41%), Gaps = 6/289 (2%) Query: 1 MDQAGII-RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M I + + W+E H+++ ++D++ GYS+ +Q MFK G +G Y+R R++ Sbjct: 1 MSYEKKIVQHFVRWIEDHIEEDKTIDDLVNYTGYSRRAVQLMFKKEYGVPVGTYMRQRKM 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 ++A LRLT +++IA + F Q F RAFK F TP YR P W + P + Sbjct: 61 CRAATLLRLTKLSVIEIAHRVHFSGTQNFGRAFKHAFNMTPTEYRNLPSWDLSLLVPAIN 120 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHE-MRYQFWHDFLGNAPTIPPVL 178 + + V + G Y + + + R + + T ++ Sbjct: 121 IDNCWNVDSCIVERSGIYVSGDECFYQQKILRTPTLESKRNRLKKIRHYSELYKT--NIV 178 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 N P ++V T L+ + + ++GG Y+ F + G + + Sbjct: 179 IASNFLPPKNRYSAIRDVIDITMLSGVEVEKNTAKNDTFYVEGGRYIKFVFNGKWSDYSK 238 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 F +Y +P L RR G DIE ++ + D C+ IP+ Sbjct: 239 FSHYIYMNILPKTKLHRRSGADIELFHYTTNFYDDDP--KFICDYFIPV 285 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 114/294 (38%), Gaps = 23/294 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++ H+D+ +++ +VA + +SK++ R+FK+ TG +I +I+ +L Sbjct: 1 MKTNEIVNRSITYIMKHIDENITIGDVAEQCHFSKYYFSRIFKNETGESIYGFIKRLKLE 60 Query: 61 KSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 +SA L+ R I DI Y + +++ FKK ++P +R + + Sbjct: 61 QSAFRLKVERERTITDIGFDYGY-CPSNYSQVFKKHHNESPIEFRNNIFQHSVNHPF--- 116 Query: 120 LGEFTMPEHKFVTLED----TPLIGVTQSYSCSLEQISDFRHEM-RYQFWHDFLGNAPTI 174 + + + E+ + + + +I ++ + +++ + D Sbjct: 117 ---YPHAQVNIESFEECSRKISIEIINDQFVIYERRIGNYNELIEKWEEFTDKYKKYIDE 173 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 V PS D+ + D + ++ GG++ ++ Y+G Sbjct: 174 NTVFLERTFDDPSITSADKCIYDICMTV-----DKNCDVENTCVIPGGKFAVYHYKGFPE 228 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + ++ P++ + Y K + + ++ IPI+ Sbjct: 229 QIYTAYQNMFQVWFPVVKKRIDNRYGFDIY-----NKIDCDSMYMELDICIPIK 277 >UniRef50_A6M0H0 Transcription activator, effector binding n=2 Tax=Clostridium RepID=A6M0H0_CLOB8 Length = 297 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 121/302 (40%), Gaps = 28/302 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I + + ++E +L +SL +++ G SK++L R+FK +TG +I Y++ R+L+ Sbjct: 3 DLKETIIETVAYIEDNLYNKISLADISLHTGISKYYLHRIFKSLTGESIMEYVQGRKLTS 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR-- 119 S L T I+DIAL+Y FD +Q++ RAFKK F TP R + ++ + Sbjct: 63 SLNELINTTMRIIDIALEYGFDYEQSYIRAFKKCFGHTPLKIRSDKISLSLILKEKINCN 122 Query: 120 ----LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIP 175 +G +FV + LIG+ +S + + DF N Sbjct: 123 DILSIGNSITYNPQFVFKQKFNLIGIKHKI------LSKSGDKSANSYGRDFFYNHKHKI 176 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG---- 231 L +E D + ++Y ++ + + + +YV+F + G Sbjct: 177 NNLINPHEYFGFTDWGSDDFIYYIPSVQVSDINTIPEGMISISIPAHKYVVFRFVGFFRP 236 Query: 232 ---LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI--P 286 G + ++ +Y + E + R + CEL + P Sbjct: 237 DDLNGRHLGRLLVQLYRKWIFKSGYKFAATFRFEYIDNS-------RSKDNYCELYVYQP 289 Query: 287 IR 288 I Sbjct: 290 IE 291 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 113/287 (39%), Gaps = 15/287 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D I ++ +LE + DQP+S+ + + YS ++QR+FK G IG + + ++ Sbjct: 3 DSLNCIYRVINFLEKNYDQPISVKELEEVSHYSYRNIQRIFKYSCGETIGGFQQRLKVEN 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + T + IA++ F + +F++AFK+ F +P R++ E G L + Sbjct: 63 AYKRILYTKENLSCIAVEVGFANIASFSKAFKQHFGISPKAARQNKEELLCGHEI-LPIT 121 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 + E + V L+ + + + + E+I + +HD +G+ Sbjct: 122 SDVLLEPEIVYLKPMQVYYQSTNTYYNNEEIEVLWEKFMENKFHD-------SGTEYFGV 174 Query: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 P + +++ + ++ GG+Y F + G + E Sbjct: 175 IADEPLIKTEISCRYDACSSMQSENKK-----LPSKIIFGGKYARFIHPGSYETIDETYT 229 Query: 242 TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 +Y + L IE+Y + + +L+P++ Sbjct: 230 KIYSRWIFHSELEFSHTPIIEKYERYSE--HAENEEEQLTYILLPLK 274 >UniRef50_UPI000190DF59 right origin-binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190DF59 Length = 211 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 185/206 (89%), Positives = 198/206 (96%) Query: 84 SQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQ 143 +QQTFTRAFKKQF+QTPALYRRSPEWSAFGIRPPLRLGEFT+PEH+FVTLEDTPL+GVTQ Sbjct: 6 TQQTFTRAFKKQFSQTPALYRRSPEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQ 65 Query: 144 SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALA 203 SYSCSLEQISDFRHEMR QFWHDFLG++PTIPPVLYGLNETRPS +KDDEQEVFYTTAL Sbjct: 66 SYSCSLEQISDFRHEMRVQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTTALP 125 Query: 204 QDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIER 263 Q+QADGYV + HPV+LQGGEYVMFTYEGLGTGVQ+FILTVYGTCMPMLNLTRRKGQDIER Sbjct: 126 QEQADGYVQSAHPVLLQGGEYVMFTYEGLGTGVQDFILTVYGTCMPMLNLTRRKGQDIER 185 Query: 264 YYPAEDAKAGDRPINLRCELLIPIRR 289 YYP+ED K GDRPINLRCE LIPIRR Sbjct: 186 YYPSEDTKTGDRPINLRCEFLIPIRR 211 >UniRef50_UPI0001787EAC transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787EAC Length = 447 Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 14/295 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I++ + ++E HL +PL+L+ +A A S +L R+F +TGH + YIR RR+S Sbjct: 1 MQTGEIVQRAIDFVEDHLTEPLALEEIAGVAAMSLPNLYRLFHSITGHPVKEYIRKRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS---PEWSAFGIRPP 117 ++A LR T P +DI + F+S F + FK+ TP YR++ + + Sbjct: 61 EAASCLRNTDLPTIDIGYRCGFESYPAFMKTFKRCTGLTPGAYRKARLVYSFERMNLNER 120 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP- 176 + +F + T L+ + ++ + + Sbjct: 121 ITFMGERDASERFPEVRITRLLPRKGIGCLFAAEHEKGIETAAIDYFRTLMSSHHIDIHE 180 Query: 177 -VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTG 235 L+G N + K ++ + + + ++L GG Y + + Sbjct: 181 LRLFGWNVDLEDESKPFGYQLLAVDVKERARMMNHPE-LQAIVLDGGLYAVVRTPSVAED 239 Query: 236 -VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +Q ++ +P + K +E Y ++ +R +L +P+ R Sbjct: 240 CIQNTWNRLFSEWLPRSVFEQGKHHFMEEYVL-------NKNQIVRMKLYLPVER 287 Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/183 (9%), Positives = 45/183 (24%), Gaps = 13/183 (7%) Query: 107 PEWSAFGIRPPLRLGEFTMP-EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWH 165 + ++ L + + + V L I + +E+ + W Sbjct: 272 NKNQIVRMKLYLPVERSKLMGRIEIVELSTLKAIAFRRKGPDCVER-----ADEASIAW- 325 Query: 166 DFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYV 225 L + ++ ++ V L+GG Y Sbjct: 326 --LSRNGFRGDSRIRVFMRCDDSLLEESSAYEVYIVPPEEFLPSLEDKDVQVELEGGTYA 383 Query: 226 MFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 G + + +Y + + + Y D + + + + Sbjct: 384 CLE-SGAYGTMTGVLHRIYR-WLDASS-EFTPDPERRWYASY-DLEGASDDGMIPAKCYV 439 Query: 286 PIR 288 P++ Sbjct: 440 PVK 442 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 111/292 (38%), Gaps = 9/292 (3%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D + + ++ ++ SL ++ SK+H QR+FK + G + YI RL + Sbjct: 5 DIEERLSLVCYLIDSEPNEKYSLQELSDVVRLSKYHFQRVFKSMVGVSPHRYILLSRLRR 64 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++ L I+DIAL F+S + FTRAF + F QTP +R+SP+WS++G R +R+ Sbjct: 65 ASFELVYFKELKIIDIALLAGFESPEAFTRAFVRLFDQTPTEFRKSPQWSSWGHRFNIRV 124 Query: 121 G-EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 E K + +T LE + F + + ++F Sbjct: 125 PVREKKYEIKIEEYPSRECVMITHKGEY-LEGMKTFDILVSWLVENNFYSETSVKSIPFI 183 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT--GVQ 237 + P + + ++ + L + G + + TY G G Sbjct: 184 TIPYANPLESAGSDYRCDIAISINC-KVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFV 242 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 I V +P + + ++ L ++ IP+ R Sbjct: 243 HAITNVLTEWLPETQWEPLPAPIL---FEHINSPLFVPETELITKVCIPVCR 291 >UniRef50_UPI0001C368D7 AraC-family transcriptional regulator n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C368D7 Length = 320 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 123/317 (38%), Gaps = 40/317 (12%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I +L ++E HL + ++ + +A AG S ++ QR+FK +TG + Y++ RRL+ Sbjct: 1 MHAWEAIDGVLDFMEEHLREEMNTEALAQSAGLSPFYFQRLFKRLTGRPVLEYVKMRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR- 119 +A AL + ILDIA+ Y F S +FTRAFK+ + +P YR+ +P L Sbjct: 61 LAASALEDREKRILDIAVDYGFSSHASFTRAFKEAYGISPEKYRKDRPMLNTCEKPELSM 120 Query: 120 -----------LGEFTMPEHKFVTLEDTP-LIGVTQSYSCS--LEQISDFRHEMRYQFWH 165 + + E + + L + +G+ + + ++ Q W Sbjct: 121 RYHLVDEGVPLIAGDIVLEIRRMRLTEPEWYLGLETAVEIKKQVPAGESTGIDVPGQLWK 180 Query: 166 DFLGNAPTIPPVLYGLNETRPSQDKDDE-QEVFYTTAL----------AQDQADGYVLTG 214 F P + + E S D E Y A++++ Sbjct: 181 AFHEKKPAVDGLAQEGPEMGMSHKADPEMGTFLYFAGALSERGTEYAGAEERSAKDGFPL 240 Query: 215 HPVMLQGGEYVMFTYEGL------GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE 268 L GEY++ E + + + ++GT +P LT E+Y Sbjct: 241 VKRELPAGEYLVCRIEAETFEKLVTAALDQAGVYLFGTWLPAHGLTFLP-FSAEKY---- 295 Query: 269 DAKAGDRPINLRCELLI 285 ++ E+ + Sbjct: 296 ---FLKNEDDIYMEIWV 309 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 16/289 (5%) Query: 1 MDQAGIIRDLLIWLEG-HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 +D I +L LE L + LD +A A S +H R+++ +TG IR RL Sbjct: 11 LDYVARIERVLKHLEATDLTEAPDLDKMAGIAALSPFHFHRVYRLMTGETPAETIRRIRL 70 Query: 60 SKSAVALRLTARPILDIALQY-RFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 +++ AL+ + +++A + + + Q F RA K + T + RRS + L Sbjct: 71 ARAVPALKQS----VELATEASGYATSQAFARALKAETGHTASEIRRS-VPLRESLEHRL 125 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 R + PL + + +++ + + + L Sbjct: 126 RHPATAETPLGIEIVAADPLTLTALRNTGAYPELNAVYQRLFDLVFSQL---SMEHLAGL 182 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 YG P + A+ + +++ G Y + G +Q Sbjct: 183 YGYQHDDPRHTAPEACR--AEVAVDVGGKAELTEDLYHIVVPSGLYARLRHLGDYDAIQP 240 Query: 239 FILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + T+Y + + D +LRC+L +P+ Sbjct: 241 AMDTLYLAVI-DAGYALADQP---LHLHFLDDPEEVATADLRCDLFLPL 285 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 84/287 (29%), Gaps = 23/287 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 +D + +L LE D LS++ + +A S +H R+F V G A G R R+ Sbjct: 2 IDYRRRLIPVLRALEQ--DPDLSIEALVDRACLSLYHFHRVFTAVAGEAPGEMCRRLRMQ 59 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L T + IAL S Q F +AF++ + TP +RR + + Sbjct: 60 RAAWQLCYTNASVTTIALGAGLASSQAFAKAFRRHYGCTPGAFRRDKSKNGHLLSKDGHA 119 Query: 121 GEFTMP-----------EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 169 + +P K + ++ L + + ++ Sbjct: 120 SDRLLPYAEDHSSARSNTMKTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLAQ 179 Query: 170 NAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY 229 + P + + ++ G Y Y Sbjct: 180 ------GEWIFIYHDNPEVTPPAQCRTDIGVTVPAGTVGA--GEVEIQLIPAGRYAQSRY 231 Query: 230 EGL-GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDR 275 + G + L G E Y+ + D Sbjct: 232 LITDRSQYGPRWQEHVGD-IVAAGLAFGDGPCFELYHSVSNDPLRDD 277 >UniRef50_C3RPB0 AraC-family transcriptional regulator n=3 Tax=Bacteria RepID=C3RPB0_9MOLU Length = 286 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 108/301 (35%), Gaps = 29/301 (9%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L ++E + D+ + +D +AA A SK++ QR+F +T + Y++ RRL Sbjct: 1 MYAWQEIQVTLDYIEENYDKEIDIDKLAAIAHLSKYYYQRLFFRLTKKTVNDYVKLRRLE 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 K+A L+ T + ILDIA+ F FTRAFK+ + TP YR I+P L+L Sbjct: 61 KAANQLKNTEKRILDIAIACGFSGHSAFTRAFKEVYKITPDDYRNQKIHLDHFIKPDLQL 120 Query: 121 GEFTMPE--HKFV-----TLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 + V + + + Y S D E + Sbjct: 121 NYVVIDTGVPLIVEGMVLEINEKQVCNDRIFYGKSKMAKVDELGEPKINNIVSLYQELDV 180 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL- 232 V+ DD Y + D+ + ++ G+YV+ +YE Sbjct: 181 QDAVVV-----DILTLSDDPALFNYFVGIEIDRPS---IDCEQRIIPSGKYVVCSYEAEN 232 Query: 233 -----GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +Y L + Y P N EL + Sbjct: 233 FESLVNEALYKASRYLYEVWFVEHRLEPDDLLVQKYYNPY--------QENCYIELWAKV 284 Query: 288 R 288 R Sbjct: 285 R 285 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 93/300 (31%), Gaps = 22/300 (7%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKW----HLQRMFKDVTGHAIGAYIRAR 57 D +L ++ HL +PL++D + A AG + H R+F + G + YI Sbjct: 6 DYQQKFERVLSHIDEHLSKPLAVDTLIAIAGLPQTQGQGHFLRLFSAMYGIELIDYINLL 65 Query: 58 RLSKSAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG--- 113 R +S L + DIA F + F+ F + TP +R PEW+A+ Sbjct: 66 RDLQSVFELAYRPNISMADIASNASFQCPKAFSEDFNARNGMTPEAFRLKPEWNAWFEKQ 125 Query: 114 -----IRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFL 168 +R P + V L L V S S + + W + Sbjct: 126 AALDTMRTPNLASNDIHHKVTLVDLASIELAVVEHSGPVS----NLHGSLQAFIGWRRAM 181 Query: 169 GNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFT 228 + P + + L E + + + V L G Y + Sbjct: 182 -HTPPLVSRSFNLVYHDVKHVPASEYRLDIGAEIGRPLTAQDV-GMVSKQLPKGRYALLA 239 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + G + E I +YG + D + + ++ Sbjct: 240 HTGNEASLGEAINDLYGQWLVNSGEPLA---DFPLVLERVTQFPDVAQHKAVTHIYLGLK 296 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 88/294 (29%), Gaps = 19/294 (6%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + L ++E +L LSL +A A S +H QRMF+ V G A++ RRL + Sbjct: 13 QSVNRALDYIEVNLAGQLSLPLIAGAACVSPFHFQRMFRAVMGETPHAFVLRRRLENALG 72 Query: 65 ALRLTAR-PILDIALQYRFDSQQTFTRAFKKQFAQTPALY--------RRSPEWSAFGIR 115 + R P+ DIAL F S F+R F++ F +P RR Sbjct: 73 DISQGNRQPLTDIALGRGFSSLSDFSRNFRRHFGCSPRKLDLETCLAGRRRALDDTLAGV 132 Query: 116 PPLRLGEFTMPEHKFVTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 L + VTL D P V E+ S MR W G Sbjct: 133 SGLGGSAADQAQEFSVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGVEH-- 190 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 G +P + + + + G Sbjct: 191 -HQWLGYLWDQPRLASAADCRYDVAVEV---THGRHCGEIGVFRFPPMKVAEVVIRGGLA 246 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V T +P E + G L C++ PIR Sbjct: 247 LEMRAFGWVRDTWLPASGYLPTDLPAFEAWLGLP-YAHGAEHFELACQI--PIR 297 >UniRef50_A4QAY1 Putative uncharacterized protein n=1 Tax=Corynebacterium glutamicum R RepID=A4QAY1_CORGB Length = 282 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 115/290 (39%), Gaps = 20/290 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ +E L + +D +A +A +++HL++MF + G ++ YIR RRL+ +A L Sbjct: 4 LNRIIQEIEDDL--EVDVDKLARRALTTEYHLRKMFGTLAGMSLAEYIRNRRLTLAAADL 61 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP--EWSAFGIRPPLRLGEFT 124 + +LD+A++Y + S + F RAF++ A P+ R S +R + + T Sbjct: 62 KAGQA-VLDVAVKYGYASSEAFARAFRRFHAVNPSQARSDSIMLSSQPRLRFHIHVKGVT 120 Query: 125 MPEHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 ++ + + L G + + I DF + + L P Sbjct: 121 DLRYRIIEKQAFYLTGFHTQVQLVFKGDNQGIVDFEKSLGKEAKARLLSLNDIEPKGALS 180 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEF 239 ++ + + + Y A+A V + + G +VMF EG +Q+ Sbjct: 181 IS-DEIENQQAEGSTLDYWHAVAT---SNPVEEFESMEVPAGTWVMFESEGAFPESIQQM 236 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 P + + G + +ED +L +PI R Sbjct: 237 WADAATEWFPANSYSWAPGPQLLHTEYSEDFSTASA------QLWLPITR 280 >UniRef50_A9KPU7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KPU7_CLOPH Length = 294 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 25/303 (8%) Query: 1 MD--QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 M+ +I D +I +E +L LSLD +A + G SK+H R+FK +TG + Y+R R+ Sbjct: 1 MNIANRKLIEDAVILIEDNLKTNLSLDEIAKQIGISKFHFHRIFKAITGSPLITYVRGRK 60 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 L+ S L I+DIA Y F+ +Q++ RAFK+ F TP+ +R+ R Sbjct: 61 LTSSLNELLDDKLKIIDIAYDYNFEYEQSYERAFKQLFGLTPSAFRQKNCELPIVPRIDT 120 Query: 119 R----LGEFTMPEHKFVTLEDTPLIGVTQ--SYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 + + + + T+ L G+ ++ + + M + + +L Sbjct: 121 SLLNDISKGIVITPWYCTMPKFHLAGIKTLINHIENYNTATANSSAMDFYYNKRYLLQNA 180 Query: 173 TIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEG- 231 + YGL D +Y ++ ++ + ++ +Y +F Y G Sbjct: 181 INEHLYYGLVTYHDFYTAD-----YYMPSVEVSESFDFNSIFTCQTIERSDYAVFRYVGL 235 Query: 232 -LGTG-----VQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLI 285 + E + +P + + ER + + ++ Sbjct: 236 HSPEDLTMKLLSEIYEVIETVWLPTTSFKPTRQFHFER-----MNQKICKEDYCEADIYF 290 Query: 286 PIR 288 PI+ Sbjct: 291 PIK 293 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 99/294 (33%), Gaps = 23/294 (7%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 + D+L + + L +AA A +S+ H R+F + G + YI RL ++A Sbjct: 30 SRLNDVLHEIHKDISADLPAARLAAIAAFSEHHFHRVFAEYMGETVHRYIARIRLEQAAN 89 Query: 65 ALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 L + + ++AL F S +F+RAFK Q +P +R A L++ E Sbjct: 90 QLMFDQSATVSEVALACGFKSLSSFSRAFKLQMGSSPGEWRSRSHTDAQLQTEFLQVPEI 149 Query: 124 ----------TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 +P+ + + + + I+ ++ W G Sbjct: 150 ARGYQNIANRALPQPVICEVPSRLMAYI--RHHGYDRSIAHTWQKL--DLWRFENGL--- 202 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG 233 + L + P + Y + + + + L GG + F G+ Sbjct: 203 HTQGQFALLHSNPCLVPLKDCR--YVACVEIHKTPLQRSVINVLRLPGGIHARFHLAGVY 260 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 ++ + +P L R + + D EL IPI Sbjct: 261 GEFIPYLSRILQEWVPHSGLRVRTTP---IWVAYNKNQFTDSQHEFDLELYIPI 311 >UniRef50_B6ICR1 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR1_ECOSE Length = 294 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 8/287 (2%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II D+LIW+E H++ + +++V +GYS+ ++Q +FK TG ++G Y++ RRL Sbjct: 1 MLQTMIINDILIWIENHIEDGIIIEDVVNLSGYSRRYIQYLFKKETGLSLGGYLKRRRLC 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + A+ +RLT +LDIA++ RFDSQQ+F+R FKK F P +YR W + PP Sbjct: 61 RGAMYVRLTTMRMLDIAVRLRFDSQQSFSREFKKVFNCPPYIYRTRDYWDLSCLCPPWEY 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 +P+ FV L L +S + + +R + + + Sbjct: 121 NMTGIPKVDFVRLP--QLSYSGHMFSYNENILGTRGEAVREKNITNDMRLY---SENFLY 175 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 + PS + VF T + + + + GEY+ ++G + +FI Sbjct: 176 ITYYSPSIKNSEN--VFIKTFSCPQENEERKCNNQNISIPAGEYLKTYFKGNIASLHKFI 233 Query: 241 LTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 VY +P + RR+G DIE Y+ + + D+ + + +P+ Sbjct: 234 RQVYFVILPEYKMARRRGGDIE-YFDICEYRNNDKKPYVNLQFFVPV 279 >UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BBL2_9BACI Length = 311 Score = 186 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 38/287 (13%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 +Q I +L +++ HL L L+ +A + YS +H QR+FK G + AYI+ RL Sbjct: 5 EQFIQITKVLEYIDQHLQDTLPLEKLAKVSTYSPFHFQRIFKSFMGESPAAYIKRLRLEN 64 Query: 62 SAVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR--------------- 105 +A L PI ++AL F S FT +FK+ F+ +P +R Sbjct: 65 AAHLLIYEREIPITEVALMCGFSSISYFTYSFKENFSTSPKKWREGAYLELFPRVYQDSK 124 Query: 106 ------SPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSL-EQISDFRHE 158 + + P + + + + L V + E I D + Sbjct: 125 KSKLFSNIKKEEQQQNPYNEFRWLDLDKVRTIELP--VCATVNRQSVGPYTEGIPDAWED 182 Query: 159 M-RYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPV 217 + + + + P +G+ P ++ A+ QD+ Sbjct: 183 LYHWTTSRELMK----PDPFTFGVPRNNPYITPPEKTRYDCRIAIDQDK---IPEGEPAF 235 Query: 218 MLQGGEYVMFTYEGLGT-----GVQEFILTVYGTCMPMLNLTRRKGQ 259 + +GG++V++ ++ + E +Y +P Sbjct: 236 LFKGGKHVVYEFDEPVDYSERGRLIECYSELYSFWLPRSGYRYLDNP 282 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 103/303 (33%), Gaps = 29/303 (9%) Query: 3 QAGIIRDLLIWLEGHLDQP------------LSLDNVAAKAGYSKWHLQRMFKDVTGHAI 50 G I +L +L + + +S+ +A A S +LQ MFK T + Sbjct: 8 YQGQIETILHYLNSMIQKNWTGKTADEFNRLISIPELAKMACMSVRNLQLMFKAYTSETL 67 Query: 51 GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWS 110 YI R+ + L+ + I +I F +Q +K++ TP ++ Sbjct: 68 HQYIIRTRMEYAQQLLKDNKKSIAEIYEYIGFANQSALNNTLQKKYNLTPRELQKK---- 123 Query: 111 AFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 + + P ++ V E P++ ++ + F + +++ Sbjct: 124 --LLETSHTYPSYISP-YRIVESETIPVLFLSYIGNYDTCSTVAF-ETYTWDCLYEYAKE 179 Query: 171 APTIPPV--LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYV--LTGHPVMLQGGEYVM 226 +P +G+ ++ + A+ + + L G Y + Sbjct: 180 NSLLPDKEDYWGIAYDDTDITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAV 239 Query: 227 FTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIP 286 + ++G + F T+ +P + + +E Y ++ L E+ IP Sbjct: 240 YVHQGDYALLDAFYETILKQ-LPQF-YSLGETPILEHYL---NSPTDTDVKELLTEVWIP 294 Query: 287 IRR 289 I + Sbjct: 295 IVK 297 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 26/293 (8%) Query: 7 IRDLLIWLEGHLDQPL-------SLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 + ++ HL + L +AA A S H R+++ + G +G RL Sbjct: 37 VERVV----AHLQDSIRAGSPLPDLAALAAVAHQSPHHFHRVYRALAGETLGQTTARLRL 92 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRP--- 116 S++ L R I D+AL + + Q RAF+ +P+ R++P A ++ Sbjct: 93 SQAVHLLGEPGRSITDVALAVGYQTPQALARAFRALLQVSPSSLRQAPAIRAQTLQQLAT 152 Query: 117 --PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 + LE ++ + Q + F + + + + Sbjct: 153 PALAPHAAPAPLQVTVQWLEPLEVVVLRQRGAFDDLDRG-FGRIAAWAERAGVIEHLHAL 211 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 V + P+Q E + + TA+A H +L G + + + G Sbjct: 212 IGVPLSDHRDVPAQQHLFECGIAFATAVA------PPAPLHVRVLGEGAHAVLRHTGSYA 265 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 G+++ + + +P R +Y D +LR ++ +P+ Sbjct: 266 GLEDALDRLLADWLPGSGHALRDAP---LHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 93/290 (32%), Gaps = 16/290 (5%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I ++ ++ + +LD +A A +S +H R+F + G + A+IR R+ ++ Sbjct: 71 YEARINRVIDYIVADPARDFTLDELAGAAPFSPFHFHRIFAGLVGETLHAFIRRLRMDRA 130 Query: 63 AVALRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 A L A + D+A+ F S Q F RAF+++F TP+ YRR + G Sbjct: 131 ANMLAFAPALSVTDVAMDCGFSSSQNFARAFRERFDMTPSEYRRRRHYLT---------G 181 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 H + G ++ + + D A P YG Sbjct: 182 ADREGAHCLLADPFRAHAGNGKARNAAPGDPGYESSMGDGVAGRDGTACALAHPSEPYGS 241 Query: 182 NETRPSQDKDDEQEVFYT----TALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 + + L D V+ + G Sbjct: 242 PTLPGTASPHGDVPWLADGPPHVRLDPDSTRSDVMNVEVAERPACRVAYLRHIGPYAS-- 299 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 E I V+G M + + + D P N R + I I Sbjct: 300 ETIGPVWGRLMAWAGQRGLMRPGVPGFGVSWDNPEVTPPENCRYDACIAI 349 Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 39/180 (21%), Gaps = 8/180 (4%) Query: 111 AFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 170 +R + + + + + E I + L Sbjct: 261 PPHVRLDPDSTRSDVMNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMR 320 Query: 171 APTIPPVLYGLNETRPSQDKDDEQEVFYTTAL--AQDQADGYVLTGHPVMLQGGEYVMFT 228 +G++ P + A+ D + L GG Y + Sbjct: 321 PGVPG---FGVSWDNPEVTPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYR 377 Query: 229 YEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 G +Y +P E Y+ D + + +R Sbjct: 378 SMISCNGFFRAWNDMYTQWLPASGWQCDDRPGYELYH---DMLGCPAEGPWDVGICVAVR 434 >UniRef50_B0N339 Putative uncharacterized protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N339_9FIRM Length = 211 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 13/222 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I + L ++E HL + + + +VA +A S ++ Q+ F+ + G ++ YIR RRLS Sbjct: 1 MNWTDGISNALKYIEEHLKEDIKIVDVANEAYVSSFYFQKAFRILCGFSVAEYIRYRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE--WSAFGIRPPL 118 + + T + I++IAL+Y +DS +FT+AF + TP + R+ S ++ Sbjct: 61 LAGSEVITTNKKIIEIALEYGYDSPDSFTKAFTRFHGVTPTVARKEQLMIKSFAPLKIQF 120 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVL 178 L + ++K + E ++G + + D +FW + + +A + Sbjct: 121 TLKGGSTMDYKIIEKEAFTVLGKARRFDF------DCAFNEIPKFWGEHMQSADKKVCGV 174 Query: 179 YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 YG+ + + ++ Y A + Sbjct: 175 YGVC-----IEDEKDEGFKYLIADEYVLDSEIPDGYEVCEIP 211 >UniRef50_A8SYK8 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYK8_9FIRM Length = 309 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 119/302 (39%), Gaps = 23/302 (7%) Query: 1 MDQAGIIRDLLIWLEGHL--DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARR 58 ++ + + + ++E HL + L + +A +A S + +++F +TG+ IG YIR RR Sbjct: 7 LNWTEGLINAIDYIETHLIDGEVLDQNTIARQAYSSPDNFRKVFHLITGYTIGEYIRNRR 66 Query: 59 LSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 LS + L + R + DIAL+Y +D+ ++FT+AF + +P+ R + R L Sbjct: 67 LSLAGEELISSNRTVTDIALEYGYDTPESFTKAFTRFHGNSPSYVRNNKSGLHNFTRIVL 126 Query: 119 RLG--EFTMPEHKFVTLEDTPLIGVTQSYS-----CSLEQISDFRHEMRYQFWHDFLG-- 169 R+ +M ++ V + + + G ++ ++ + I F E Q W + Sbjct: 127 RVTADGGSMLNYRIVKINNMCIAGYSRVFTSLDTAKNNVLIPKFTRECCSQSWDKLMEIK 186 Query: 170 -NAPTIPPVLYGLNETR---PSQDKDDEQEVFYTTA---LAQDQADGYVLTGHPVMLQGG 222 N L+G + ++ YT Q+ + + + G Sbjct: 187 SNNEKPNNCLFGYRSNDFINIDKFNNEISCFNYTFGRMITKQEISGLNISDYSITSIPDG 246 Query: 223 EYVMFTYEG-LGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRC 281 E++ F G Q +Y +P + +E + L Sbjct: 247 EWICFDCSDTTPAGQQSLWYKIYTEFLPFSHYNIVPDVTLEC----SNVSLEKEQNYLLL 302 Query: 282 EL 283 ++ Sbjct: 303 QI 304 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 109/338 (32%), Gaps = 65/338 (19%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I ++L ++ H+D PL ++A A +S +H QR F TG+ + Y+ RL K+ Sbjct: 21 KIENVLTYINEHIDHPLLATDLADVACFSVFHFQRAFTLYTGYNVAEYVLLTRLRKAVYE 80 Query: 66 LRL-TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR------------------- 105 LR + +LDIAL F Q+FTRAFK+QF Q P+++R+ Sbjct: 81 LRYRPSMSVLDIALSCGFSHHQSFTRAFKRQFCQAPSIFRKQFVEYVRKSHAIPTHQAIV 140 Query: 106 --------------------------SPEWSAFGIRPPLRLGEFTMP----------EHK 129 + + +++ M + + Sbjct: 141 GAPANVSYFEELTPTTHSSCIKMLTVNENNGKHANKKEIKIRGAYMTDISSKNIPLQQIQ 200 Query: 130 FVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQD 189 + T + +T + ++ W G +P Y + P Sbjct: 201 VIDFPRTAIAFLTHEGDPE----GVMKTVAQFIQWRKQYGPSPRT-SKTYNILYNDPRDV 255 Query: 190 KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMP 249 +E ++ + + ++ G F + G + E I +Y T Sbjct: 256 PKEEYRFDVAASI-RKVVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISL 314 Query: 250 MLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + R + ++ +PI Sbjct: 315 NEDYEIRNAP---LFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_D2NAV2 Transcriptional regulator n=1 Tax=Staphylococcus aureus subsp. aureus ST398 RepID=D2NAV2_STAAU Length = 288 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 105/294 (35%), Gaps = 15/294 (5%) Query: 1 MDQA-GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 MD + D + +++ +L + L+L ++A G + H + +F +TG + YI+ R+L Sbjct: 1 MDMILKNLNDSIDYIDQNLTKDLNLYDIAYFVGLPEQHYRNLFIFLTGIGLSEYIKKRKL 60 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL-YRRSPEWSAFGIRPPL 118 + L + +A++Y + S FT++FK P+ Y S + + Sbjct: 61 YFANKDLLN-KESVTSVAIKYGY-SIDGFTKSFKDWSGYLPSQIYEEQVLISYPKLSFAI 118 Query: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQF----WHDFLGNAPTI 174 + + + V L ++GV + E +++ E+ + Sbjct: 119 NVKGGIDMKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITNIQKEEMNNLQNIE 178 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-G 233 P + ++ +E + + + + + + + ++++F EG Sbjct: 179 PKEIVNVSYDADENFIKEEGYLTHMIGVITTE-NNISDQLDVINIDESKWIVFENEGKFP 237 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Q+ +Y +P + N E+ + + Sbjct: 238 KVLQDTYAKIYSEWLPETEYKLANVPMF-----SFTKFNDSDSDNAYSEIWVAV 286 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 114/297 (38%), Gaps = 16/297 (5%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E +++ +++D A A S + RMF +TG+++ YIR RR+S Sbjct: 1 MNYYERIQKSIDYIESNVENKINIDFAAQTAFMSLSNFYRMFFALTGYSVKEYIRLRRIS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A+ ++ T ++DIA+++ F+S +F+RAFK+ P+ YR+ F + Sbjct: 61 LAAIDIQGTDTCLIDIAIKFDFESGDSFSRAFKRITGFLPSDYRKKKSLYKFERIDIMEK 120 Query: 121 GEFTMPEHKFVTLEDTPLIG----VTQSYSCSLEQISDFRHEMRYQFWHDFLG-NAPTIP 175 + D ++ +Y C + + W + G N Sbjct: 121 YFDIQDKELIENYPDIKVLKEMEPTRVAYFCYYGKQPEHHAFTVMAQWLNKNGLNVNEQN 180 Query: 176 PVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE----G 231 ++G N P+ ++E +A + +L GG Y + G Sbjct: 181 LRIFGYNNPSPASPDEEEYGYEVCATVADNIVVND-DLVKEKVLGGGLYAVTNVRRGQDG 239 Query: 232 LG-TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + + Q +E + +D +L +PI Sbjct: 240 DIGGEIIKAWSR-FNNWLSDSKYVYGGHQWLEEHLGFDDN----ANHIGGIDLYMPI 291 >UniRef50_UPI0001789679 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789679 Length = 289 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 19/295 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ II LI +E +L+QPLS+ +VA SK++ R+F + G ++ YI +RRL+ Sbjct: 1 MNHHRIIEQALIHIEENLEQPLSVSSVALTFNMSKYYFHRLFSAMMGCSLNQYILSRRLN 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI------ 114 + + + DIA Q F +Q +FTRAFK+ + P+ R + Sbjct: 61 AALSLIHNNNLSLTDIAYQLAFGTQASFTRAFKQHYGVAPSSLRAGFNKISPTPIPTVVK 120 Query: 115 RPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 RP + + + ++T + G+ + + H I Sbjct: 121 RPFKNMNGDVVTDFTLTEFKETRISGIAFEVDLATDDYKKKIHSHSKML-------LNHI 173 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 + G S + + + D V + F Y G Sbjct: 174 DDNINGSCFVIYSNCQPNSTRFKVLFGIPSDIQIHKP-FYFTVDVPTIFCARFNYFGDLL 232 Query: 235 GVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E + T Y + + DIE D ++ + PI++ Sbjct: 233 DIGEVLKTDYARFLKISKQE-SDQSDIELIQVFND----VHNLDSTYHIYAPIKK 282 >UniRef50_D2LQS1 Transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQS1_BACS4 Length = 301 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 116/292 (39%), Gaps = 22/292 (7%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD I+D ++E H+++ ++++ + + YSK+H R+FK V G ++ Y++ R+L+ Sbjct: 1 MDYLEKIQDFSDYVEAHIEEDMNINAIINQLYYSKFHFYRVFKAVVGLSVHEYVKRRKLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR-------SPEWSAFG 113 ++A L T IL IALQ+ F SQ+ F R FKK + P +R+ + + Sbjct: 61 RAADCLLHTKDSILTIALQFGFQSQEVFIRNFKKIYGVPPGKFRKVQIPMRSNNRINVES 120 Query: 114 IRPPLRL-GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP 172 IR ++L + T+ D L+GV +SD + +F A Sbjct: 121 IRLNMKLAKGKAIVNEHLETINDLMLVGVIHR-------VSDSNPLSIIERMTNFFTKAH 173 Query: 173 TIPPVLYGLNETR--PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 +P L G ++ A+ ++ V +T++ Sbjct: 174 LVPNQLNGNVYRVCLDFDTNNEAASFQELIAIEVSNLSQIPDGMVGKVIDNVHVVTYTHQ 233 Query: 231 GLG-----TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 G + + +Y +P+L T IE+Y D Sbjct: 234 GKLFTEEEGKIIDTYHFIYQYRIPLLKATLTSDYIIEKYGKDFKGPYEDDAH 285 >UniRef50_C9AWD9 AraC-family transcriptional regulator n=5 Tax=Firmicutes RepID=C9AWD9_ENTCA Length = 300 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 117/309 (37%), Gaps = 33/309 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ + ++E +L +PL ++ +A A S ++ QR+F + ++ YI+ RRL+ Sbjct: 1 MHAWEAIQKSIDYIEDNLTEPLEIETLAQVASLSVFYYQRLFTRLVKISVREYIKLRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + A+ L+ + ++D+A + F S F+R FK + +P+LY++ P +P L L Sbjct: 61 RGALLLKNQKKRVIDVAFEVGFSSHAVFSRTFKTVYRISPSLYQKKPIGLQNFDKPDLSL 120 Query: 121 GEFTMPE----------HKFVTL---EDTPLIGVTQSYSCSLEQISDFRHEM--RYQFWH 165 G E + GV Y + ++ R + + WH Sbjct: 121 GYIVTEEGIPLISEGVVLEIQKKSNPHPLVFYGVLGYYPFNYGKMLGQRTGIDPIEEIWH 180 Query: 166 DFLGNAPTIPPVL-YGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 +FL P Y + + P E Y D + G L +Y Sbjct: 181 EFLQKIANQPGKANYQIGVSFPGDAP--EGYSSYFVGQVGDDSQGST--FSEWTLPARDY 236 Query: 225 VMFTY----EGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLR 280 V+ ++ E L + + + + E Y E+ + Sbjct: 237 VVCSFDTISEQLIINMGKAMRYT-RFWLKKKGWIAEDFFP-ELYQERENHV-------VH 287 Query: 281 CELLIPIRR 289 EL IP ++ Sbjct: 288 VELWIPFKK 296 >UniRef50_B2K4J9 Transcriptional regulator, AraC family n=34 Tax=Enterobacteriaceae RepID=B2K4J9_YERPB Length = 297 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDI 76 +L++ +LD+VA +GYSKWHLQR FK + G + +YIR R L+++AVALR++ +PI+ I Sbjct: 19 NLEKRPTLDDVAKISGYSKWHLQRKFKSIVGLQLASYIRGRVLTRAAVALRISRKPIITI 78 Query: 77 ALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDT 136 + + FDSQQTFTR FKK+F TP +R+ W G+ P E PE K VTL Sbjct: 79 SDELGFDSQQTFTRTFKKRFGVTPNSFRQMNHWDVQGMIPRFGFYENYTPEIKQVTLPGK 138 Query: 137 PLIGVTQSYSCSLEQISDF------RHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDK 190 L+G T+ E+ + M+ + DF +Y L + + Sbjct: 139 ELVGFTRR--LDFEEYNGCVVQRSSCMAMKDEILLDFFKEVNFACQRIYSLFSVKDVDGQ 196 Query: 191 DDEQEVFYTTALAQDQADGYVL--TGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCM 248 ++ V+Y+TA+ +++ + + GE++ +++G +F ++ + Sbjct: 197 QGQKSVYYSTAIDKERKHEIQGSREIDHIAIPEGEFLSISHQGSAKECVKFATYLFNNVL 256 Query: 249 PMLNLTRRKGQDIER 263 P L +G ++E Sbjct: 257 PKLRDEVGRGIEMEV 271 >UniRef50_Q49JG3 LdaA n=9 Tax=Enterobacteriaceae RepID=Q49JG3_ECOLX Length = 309 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 19/282 (6%) Query: 7 IRDLLIWLEGHLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I +L ++E +++ P+ ++++ +GYS+ +LQ +F D G +G YI+ RR+S++AV Sbjct: 8 INAILDYIEDNIEISPIDINSLVEYSGYSRRYLQLLFFDYIGMPVGKYIQRRRVSRAAVL 67 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 LRLT P++ I+ + +DSQQTFTR FKK TP YR+ W+ F + R + Sbjct: 68 LRLTNLPLVTISEKLCYDSQQTFTREFKKHTGNTPLQYRKDKIWT-FKNQTGHRHLDTLF 126 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 P + LE+ G ++ + E Q W+ L+ N Sbjct: 127 PVPELRRLENKDFFG----TPVCFKEKIPYTAENSQQKWNMVKSLFSRSDEPLFVSNAIS 182 Query: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYG 245 +D F ++ + + + G + G + FTY G I +Y Sbjct: 183 KENKLNDN---FIINSIFWAKKEHSSIEGK---IDEGLFAYFTYHGSIKDYVFHINNIYM 236 Query: 246 TCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P L +R D+E D + E +P+ Sbjct: 237 NVLPYXGLQKRNSYDLEIITRNTD-------GSFYFEYYLPV 271 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 90/295 (30%), Gaps = 37/295 (12%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D +R ++ +LE H +PL L +A +A S +H R++K VTG A +R RL Sbjct: 4 DYRERLRPVIRYLEQHYREPLDLAVLAERAALSPYHFHRVYKAVTGETPAATVRRLRLEN 63 Query: 62 -SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGI------ 114 + I +AL++ + S Q +AF+ F T R ++ ++ Sbjct: 64 IARQLFFAANADITTLALEHGYASSQALAKAFRAHFGMTARDIRACRDFESWMQAMQNSK 123 Query: 115 -------------------RPPLRLGEFTM-PEHKFVTLEDTPLIGVTQSYSCSLEQISD 154 P + E M + + TL + + + Sbjct: 124 IGYLLHKNGHAAHAANGDTAPVINPQEQAMTTDMQTTTLAPCTVAYIRVTGEYGKNYEPA 183 Query: 155 FRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTG 214 ++ G + P D+ + D A G Sbjct: 184 TNRLYQWA------GAHGLADGECLFIYLDSPEITPADKCRTDICLTVPDDTATGN--GI 235 Query: 215 HPVMLQGGEYVMFTYEGL-GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAE 268 L GG Y + + + + + L E+Y+ + Sbjct: 236 EKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSAVI-AAQLEIDDRPCFEQYHHYD 289 >UniRef50_B3IA10 LdaA n=1 Tax=Escherichia coli E22 RepID=B3IA10_ECOLX Length = 327 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 20/288 (6%) Query: 1 MDQAGIIRDLLIWLEGHLDQ-PLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRL 59 M + + + +++ +LD+ +++D++ A +GYS+ +LQ +FK G A+G YI+ RR+ Sbjct: 40 MLKLMTVNAITQYIDDNLDKTSINIDDLVAYSGYSRRYLQLLFKRHIGMAVGRYIQLRRV 99 Query: 60 SKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR 119 S++AV LRLT + +I+ + +DS QTF+R FKK TP YR S WS + R Sbjct: 100 SRAAVFLRLTDLSLSEISERLLYDSPQTFSREFKKNTGYTPLQYRSSNVWSFMNL-TGFR 158 Query: 120 LGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 T P K L+ + + + C E+I + + + +A Sbjct: 159 DTNTTFPAPKLYQLQKRDI--YAEHFICCQEEIPYYGLNSLSRIER--ITSALRDGNKKI 214 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEF 239 L+ ++ T L ++ + +++ G Y + + G +F Sbjct: 215 FLSNLVEKNV---GHKINIHTMLWLEKGNSET----KIVINKGIYASWKFVGTIQNYIQF 267 Query: 240 ILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 I +Y +P L R+G DIE + D L +P+ Sbjct: 268 INHIYMNVLPFYGLNPREGYDIETFKEYSDD-------ELEFNYFLPV 308 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 117/291 (40%), Gaps = 21/291 (7%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 + +I + ++ H+ + +S+++VA +SK++ RMFK+ T +I A+I+ R+ +S Sbjct: 4 KKSLINKSIEYILQHIHEDISIEDVANYCNFSKYYFSRMFKEETEVSIYAFIKRMRMDQS 63 Query: 63 AVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE----WSAFGIRPP 117 +V+L+ + I DI + Y S ++ AF KQ++ P +R++ + F Sbjct: 64 SVSLKVEKDKTITDIGVNY-GYSSSNYSSAFSKQYSICPLEFRKAINSTCVSNPFCPSKY 122 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 F K + + + Y + I D + + + ++ + Sbjct: 123 NTFKSFEHYNKKIIIENLADFKVIYERYIGNYIDIGDNWYSF-MERYKTYIKPDTLLIEK 181 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQ 237 Y PS + ++ + +D V + ++GG++ ++ + G + Sbjct: 182 SY----DDPSITELEKCIYDLCITVGED-----VELENVTTIKGGKFAVYRFNGYIHDIF 232 Query: 238 EFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 V+ +P + + Y+ + ++ +L I I+ Sbjct: 233 VTFQGVFNIWLPRSGYKMDERYGLGIYHNI-----DRKNNHVTMDLCIAIK 278 >UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lactococcus lactis RepID=O87252_9LACT Length = 265 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 107/274 (39%), Gaps = 22/274 (8%) Query: 24 LDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFD 83 ++ +A S+++ Q++F ++G +G YIR RRLSKS LR T I+DIA +Y + Sbjct: 4 IEQLARV---SEYNFQKIFSVLSGLTLGDYIRKRRLSKSLYDLRETDEKIIDIAFKYGYS 60 Query: 84 SQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLR--LGEFTMPEHKFVTLEDTPLIGV 141 S ++++R+F++ F +P+ R+ + +R + + + + G+ Sbjct: 61 SSESYSRSFQQLFNISPSKARKEQHELTIFPKLSIRVQIKGGIQMNYLITNKPEMMITGI 120 Query: 142 TQSYSCSL---EQISDFRHEMRYQ--FWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEV 196 +SY I F F + P + G+ + + Sbjct: 121 KESYPNITVGQASIPKFWDRFNESDLFNQVINEKSEHSPNTILGICL------PREGEAY 174 Query: 197 FYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGL-GTGVQEFILTVYGTCMPMLNLTR 255 Y + D+ + L ++ +F G + + +Y + P T+ Sbjct: 175 DYFIGVYTDEKTTA-DKLETITLPASDWAVFKAVGKVPEAIHQTYQDIYESFFPSTTYTQ 233 Query: 256 RKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 +K D E Y + N E+ IPI + Sbjct: 234 KKAPDFESYPLDLNPM----SENHITEIWIPIHK 263 >UniRef50_Q18D16 AraC-family transcriptional regulator n=6 Tax=Clostridium difficile RepID=Q18D16_CLOD6 Length = 303 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 113/313 (36%), Gaps = 36/313 (11%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I+ L +E +L + +S++ +A KA S ++ QR+FK + + YI+ RRL+ Sbjct: 1 MHAWESIQITLDLIEANLSEEISINELANKANLSPFYYQRLFKRLVNKTVMEYIKLRRLA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +++ L ILD+AL + F S +TFTR+FKK + TP YR +P I+P L L Sbjct: 61 RASEYLAEHKNRILDVALNFGFASHETFTRSFKKAYGLTPEKYRANPVKLNHFIKPELIL 120 Query: 121 GEFTMPE----------HKFVTLE---DTPLIGVTQSYS-CSLEQISDFRHEMRYQFWHD 166 + E + +G+ C L + + W Sbjct: 121 NYAMVDEGVPLIADDIVIEVNRKTLSNPRTFVGIEIEVPICQLVGGETTGIAIVEELWMK 180 Query: 167 FLGNAPTIPPVLYGLNETRPSQD-KDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYV 225 IP + G NE E Y + + V L EY+ Sbjct: 181 LGSQRHNIPNQIPGGNEFAALYMGNAKEGNCMYMAGVEVESGTS-VEGYSTFELPVKEYL 239 Query: 226 MFTYEGLGTGVQEFIL-------TVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPIN 278 + +E E + M NLT IE YYP P Sbjct: 240 VCGFE--AENFNELVNSAVFKADKFMERWMKKHNLTTTD-FAIEMYYP-------TTPEA 289 Query: 279 LRCELLI---PIR 288 E I PI Sbjct: 290 AYLEHWIVPVPIE 302 >UniRef50_B9Y4X5 Putative uncharacterized protein n=5 Tax=Firmicutes RepID=B9Y4X5_9FIRM Length = 307 Score = 169 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 110/311 (35%), Gaps = 32/311 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M I++ L +E L + + + +A + S ++ Q++FK + ++ Y++ RRLS Sbjct: 1 MYTWEAIQEALDQIEKELPRGIKTEWLAEQVSLSPFYFQKLFKRLVHKSVQEYVKLRRLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 + L R I +IA Y F S FTR FK+ + TP YR+ I+P + L Sbjct: 61 RVIEELNQEDRTITEIAYDYHFSSPANFTRVFKETYGITPEEYRKKRPRLNTMIKPDIAL 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRH----------------EMRYQFW 164 + E L D L+ + + + E F ++ Q W Sbjct: 121 TYKDLDE-NIPILIDDLLLEIRRKTLETEETYLGFSTLVDTAKQIPMGESTGIDIPGQCW 179 Query: 165 HDFLGNAPTIPPVLYGLNETRPSQDKDD-EQEVFYTTALAQDQADGYVLTGHPVMLQGGE 223 F + V+ E S D + Y T L G Sbjct: 180 TRFHQEKSKLKTVINPDFEMGMSYGADPIKGTFHYFTGALYPMPQEISEPYVIQSLPPGN 239 Query: 224 YVMFTYEGL------GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277 Y++ E G+ + + T +P +L + E+Y Sbjct: 240 YIVCRIEAENFETLVCEGLDKAASYLLNTWLPSRSLEI-EPFSAEKY-------NLAETE 291 Query: 278 NLRCELLIPIR 288 ++ EL + ++ Sbjct: 292 DISMELWVKLK 302 >UniRef50_A6LY67 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY67_CLOB8 Length = 291 Score = 169 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 25/300 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ + D + +LE HL + +SL+ +A + +SK+H R+FK V G IG Y RRL+ Sbjct: 1 MNTKNYVLDAIEYLEKHLLEGVSLEQLAKQFNFSKFHYARLFKAVLGENIGDYQMKRRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A++L T IL+IA+ + SQ++FTR FK F TP YR + + + Sbjct: 61 IAAMSLLETRDSILNIAIMCGYSSQESFTRMFKAYFGITPKDYRDNEIEYLNLYKYSITQ 120 Query: 121 GE-------FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 + T E++ + + G+ ++ ++ + L Sbjct: 121 EDIERVMSYGTATEYEIIHKNSFEITGLLYHGDNKKHDVARIFNQTAQKV---QLDKIYN 177 Query: 174 IPPVLYGLNETRPSQDKDDEQE---VFYTTALAQ---DQADGYVLTGHPVMLQGGEYVMF 227 +YGL K++E + + Q D + +Y ++ Sbjct: 178 QIDGVYGL-----DFCKNEEVRSYEFDFIAGIDSRYFSQIDRKDAQLVHKYIPENDYAVY 232 Query: 228 TYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + +Q I + + + E Y N+ L IPI Sbjct: 233 SLTNIIEKIQIQIQRNWFSLLTDELYIPCDNYAYEFY----PNGFVPNQKNIDAYLFIPI 288 >UniRef50_D0YAG4 Transcriptional regulator, AraC family n=6 Tax=Klebsiella RepID=D0YAG4_KLEVA Length = 299 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 116/281 (41%), Gaps = 4/281 (1%) Query: 9 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRL 68 +L WLE ++ S+D++A GYS+ + +F IG YIR RRL+ +AV+LRL Sbjct: 8 KMLAWLEDNIYCNPSIDDLAQYMGYSRRFVYEVFYQYGQLPIGQYIRLRRLTIAAVSLRL 67 Query: 69 TARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEH 128 T +PI IA Q +DS QTF+R FKK+F+ +P YR + W + ++P+ Sbjct: 68 TRQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYRCAVHWDTALLLKKFDPEGESLPQA 127 Query: 129 KFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQ 188 +F +L + G Y L + + T + + Sbjct: 128 RFCSLPERVYRGSPMKYELRLSDM--VLQSTSKTAVRQKVDRFFTAGGGRLSVLSDYYAA 185 Query: 189 DKDD-EQEVFYTTALAQDQADGYVLTGH-PVMLQGGEYVMFTYEGLGTGVQEFILTVYGT 246 ++ EV +++ LT + + + G YV + G +Y Sbjct: 186 RNNELNVEVNAFVGCHRERGALPALTTNSTLTTRPGLYVGVEFYGSWARYARLSSDLYME 245 Query: 247 CMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +P L +RR+G DIE + R IP+ Sbjct: 246 LLPALGASRREGVDIECFLERHTEGGPAAERRYRVRYFIPV 286 >UniRef50_P77601 Putative HTH-type transcriptional regulator ykgA n=49 Tax=Enterobacteriaceae RepID=YKGA_ECOLI Length = 239 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 4/213 (1%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + I++ LL W+E +L+ P+S++++A K+GYS+ ++Q +F++ +G YIR RRL Sbjct: 12 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLC 71 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A+ +RLTA+ +LDIAL FDSQQ+F+R FKK F +P YR W I P + Sbjct: 72 RAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLI 131 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAPTIPPVLY 179 + E + + +TP+ G + Y + + D ++R + N T +Y Sbjct: 132 RQQQKTECRLINFPETPIFGNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTD---IY 188 Query: 180 GLNETRPSQDKDDEQEVFYTTALAQDQADGYVL 212 ++ PS D V + AD Sbjct: 189 FVSTFEPSTKSVDLLTVETFAGTVCEYADMPKE 221 >UniRef50_B7LRE5 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LRE5_ESCF3 Length = 266 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 121/282 (42%), Gaps = 17/282 (6%) Query: 7 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66 + ++ W+ +++ P++++++ +GYS+ HL +F TGH++ Y+R +RLS +A L Sbjct: 1 MINIFAWINKNIESPINVEDLVKISGYSRRHLHTLFMQYTGHSVAEYVRLKRLSYTAHLL 60 Query: 67 RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126 +LT +LDI+L+Y +DS Q+F+R FK+ + TP YRRS +W + Sbjct: 61 KLTNLSVLDISLRYHYDSPQSFSRVFKRYYQMTPLAYRRSQQWGKKIHFVDPSERTDVV- 119 Query: 127 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRP 186 + FV E G + + DF + Q + + ++ P Sbjct: 120 -YDFVYYEGDTFSGSLHQFHLDMSSRLDFWQKAAMQINDMKFRSLQHTSQIRSSVSYY-P 177 Query: 187 SQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGT 246 S V Y + D A+ + + G+Y+ + G+ + +Y Sbjct: 178 SLHSKSSMVVDY---VYDDGANSKTD----IAIASGDYIKISRRGILNDMVGLPNVLYRN 230 Query: 247 CMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + NL R G+D E D+ + IP++ Sbjct: 231 ILYAHNLIRGNGRDFEIIER-------DKGHTINFSYYIPVK 265 >UniRef50_Q24QP2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24QP2_DESHY Length = 300 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 110/308 (35%), Gaps = 32/308 (10%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M + ++E HLD+ ++ ++A GYS +H +F+ +IG Y+R RRL Sbjct: 1 MPYKRDMERCRDYIEAHLDENITAQDLAEFLGYSFYHFCHVFRICNSLSIGEYLRRRRLQ 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++ +L R I DIAL+ F++ F +AF+K+F + +++ Sbjct: 61 RARESLGQGGR-ITDIALKSGFETSAGFAKAFQKEFGMSARAHKKM-----LLQHNEHAE 114 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSC-------SLEQISDFR--HEMRYQFWHDFLGNA 171 + K E +G + S + + + + D+ A Sbjct: 115 KGRMGMQVKMARKEGFKAVGYSISPQGERKSRESKVSDLGAYWLHADFSSVSKEDYAKLA 174 Query: 172 PTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTY-- 229 GL +P Q+ D+ + Y + + + G +Y +FT Sbjct: 175 KGEIADEIGL-WFQPDQESDN---LNYFFGPVVEDFAYVPREMVTLEVPGADYAVFTTCP 230 Query: 230 -------EGLGTGVQEFILTVYGTCMPMLNLTRR-KGQDIERYYPAEDAKAGDRPINLRC 281 G VQ+ ++ + + E Y + G ++ Sbjct: 231 ADLAHDRFAFGQEVQKTWKYIFEEWFEESDYIFDQEKLAFEFY---TNENGGMDSMSAVA 287 Query: 282 ELLIPIRR 289 + IP+++ Sbjct: 288 NIYIPVKK 295 >UniRef50_C4UL45 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UL45_YERRU Length = 280 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 11/286 (3%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 ++R +L W+E ++ S+ + + GYS+ L+ F +G +G Y+ RR+S++A+ Sbjct: 4 AVVRYILSWVEENIYTGASIGKLVDETGYSRRTLELWFLKYSGFPLGEYLLRRRMSRAAM 63 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 LR+T IL+++ + F S Q FTR+F+ TP YR+ +WS ++ PL + + Sbjct: 64 LLRMTELSILEVSTMFHFYSSQNFTRSFRIFSGVTPTKYRKQDKWSVKLLQRPLLMEDTH 123 Query: 125 MPEHKFVTLEDTPLIG--VTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 + + L + L G V +++ L + D N+ + + + Sbjct: 124 NLKAEHCVLPELKLRGSSVVCAHNFILPLVEDDLARRMKSAVSSIRDNSGNEVCIAFRI- 182 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 PS ++ + D +++ GEY+ F + GL + F Sbjct: 183 --MPSASLSASRDAVINVEMIIHDMDEKKEGTEEIVIPAGEYIQFRFSGLWSEYIVFTRL 240 Query: 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 VY + + RR D+ + D+ +L C LLIP+ Sbjct: 241 VYFK-LVEEKVCRRNSYDLIFFTYQPDS-----NDDLICRLLIPVE 280 >UniRef50_C6PRW6 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PRW6_9CLOT Length = 286 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 29/300 (9%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 D ++ L+ ++E +L LSL++++ YS ++ QR+F VT +I YI RRL + Sbjct: 3 DYLSVVNLLIEYIEENLQSDLSLESLSKLVNYSTYYTQRIFSTVTCMSIHDYITERRLIR 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 + + I+D+AL+Y + S FT+AFKK+F P+ ++ E + PLR+ Sbjct: 63 AGEEILNGG-KIIDVALKYGYSSHNGFTKAFKKKFGLLPS---KADECLDITVDKPLRIL 118 Query: 122 EFTMPE--------HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPT 173 E HK + LE+ L G + + + DF ++ + + + Sbjct: 119 ERDFYNKDGNLCICHKLIYLEELVLWG-----NIFVVNLKDFWNDDNMIRYVENKVISFI 173 Query: 174 IPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLT-GHPVMLQGGEYVMFTYEGL 232 + E + F + ++ AD G +++ YV F+Y G Sbjct: 174 RANESSSTYCIGILCSSNLEVQYFIGKIVHENTADVCKCNRGKKLVIPKSLYVKFSYRGN 233 Query: 233 GTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL---IPIRR 289 I+T C +T Y D L+ ++ +PI++ Sbjct: 234 IKENPNIIITDALKCFSTCGITP--------YQEKIDHIEIFTKSYLQTKIFDIVVPIKK 285 >UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW30_HALNC Length = 287 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 101/293 (34%), Gaps = 24/293 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + ++ + LE P++L A+ G S + L R+F G + ++ R RL++ Sbjct: 11 NYLDQLQ-VCRLLEARQSDPVALKTFCAEHGVSVYTLNRLFLKWLGQSPRSWQRRLRLNE 69 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE-WSAFGIRPPLRL 120 +A+ L T + +L IA ++SQQ+F RAF++++ P +RR PLR Sbjct: 70 AAILLGRTDQSVLSIAQTVGYESQQSFCRAFRREWGVNPTCFRRQFRMQHGDLPTQPLR- 128 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 L + ++Q + S +Q+ + + W G T V G Sbjct: 129 -----MPVTHGVLPPLKI--ISQRFVGSYDQVPHYWR--VFGAWVTQTG-LDTKQGVFVG 178 Query: 181 LNETRPSQDKDDEQEVFYTTALAQDQAD-----GYVLTGHPVMLQGGEYVMFTYEGLGTG 235 + P E Y + GG Y +G Sbjct: 179 VTWDDPDVTPKGEIR--YDCGFLPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHE 236 Query: 236 V-QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 + + + +P +E + A R E+ +PI Sbjct: 237 LVPDRYQRLVCQWLPSSGWQLDLRPALEWFAEA---PWRMPEHEWRFEIRLPI 286 >UniRef50_C8QFY6 Transcriptional regulator, AraC family n=3 Tax=Enterobacteriaceae RepID=C8QFY6_9ENTR Length = 142 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 66/118 (55%), Positives = 84/118 (71%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M Q II L W++ +LD+ LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ Sbjct: 1 MMQEEIIHSLTHWIDQNLDKTLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL 118 +A ALR T RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + A RP L Sbjct: 61 LAAEALRQTQRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTAYRHTMRRQAMIQRPRL 118 >UniRef50_B7JL95 Transcriptional regulator, AraC family n=54 Tax=Bacillus cereus group RepID=B7JL95_BACC0 Length = 299 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 64/104 (61%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + +I+ + ++E HL + L+ + VA+ + S +H R+F+ G ++ YIR RRL+ Sbjct: 4 EYKEMIKKAIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYIGMSVTDYIRKRRLTH 63 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 +A L T R ++DIA+QY F SQ+ FTRAFK+ F P YR+ Sbjct: 64 AAQVLVSTERAVIDIAMQYGFSSQEAFTRAFKRMFQLPPKKYRK 107 >UniRef50_A8FAK8 Possible AraC family transcriptional regulator n=2 Tax=Bacillus pumilus RepID=A8FAK8_BACP2 Length = 295 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 7/127 (5%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 + I++ L ++E HL L L +A AGYS++H R+FK V ++ Y+R RR+++ Sbjct: 5 EHEKTIQETLNYIEQHLKDDLPLQTLAKHAGYSRFHFHRIFKKVIKKSVVDYLRERRMTQ 64 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L T + +DIA QYRF SQ++FTRAFKK + +PA YR+ +R + Sbjct: 65 AAKDLIHTDQRAIDIAFQYRFSSQESFTRAFKKIYDMSPARYRK-------LLRNVINEE 117 Query: 122 EFTMPEH 128 E M +H Sbjct: 118 ETNMADH 124 >UniRef50_A6M0I1 Helix-turn-helix-domain containing protein, AraC type n=2 Tax=Clostridium RepID=A6M0I1_CLOB8 Length = 127 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 66/111 (59%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M+ I+ + ++E +L++ + L +A KA SK+H R+F V G + YIR +RL Sbjct: 1 MNYEACIKKSIEYIENNLNKKIQLKELADKAFLSKYHFHRVFHSVVGEPVAEYIRKKRLE 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA 111 ++A L T I+DIAL+Y+F +Q++FT+AFKK + P +R++ Sbjct: 61 EAANELLTTENKIIDIALKYQFSNQESFTKAFKKLYGIPPKEFRKNKINLT 111 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 54/103 (52%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 + +++ H +PL+L+ VA +AG S ++ ++FK+ G Y+ R+ ++ A Sbjct: 409 KLGKAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEA 468 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPE 108 L T + + +I ++ F+R FKKQ +P+ YR+ + Sbjct: 469 LAETDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQ 511 >UniRef50_A8RX40 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RX40_9CLOT Length = 140 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%) Query: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 +Q +R ++ ++E HL++ L+L+ +A AGYS++HL R+F + TG I Y++ RRL+ Sbjct: 3 NQKHTVRKVIDYIEEHLEEKLNLEQIAEHAGYSRFHLNRIFMEETGGTIHKYVQERRLTM 62 Query: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 +A L T I IA + SQQ F+ AFK+ + P YR+ + R + Sbjct: 63 AAEKLVDTDMDITQIAYDAGYQSQQAFSLAFKQVYLCPPGAYRKRGIYLPAKKRIQMHQA 122 Query: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLE 150 + GV + Sbjct: 123 SC------------FTIYGVCDRGMGGIA 139 >UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVM9_HALO1 Length = 301 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 94/292 (32%), Gaps = 33/292 (11%) Query: 19 DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIAL 78 D+ +SL +A + G S HLQR F + G + Y R +L +AV L T ILDIAL Sbjct: 20 DKRVSLARLAEQTGLSPSHLQRTFARLAGESPKQYARRMQLECAAVLLLSTDDSILDIAL 79 Query: 79 QYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR---------------------PP 117 FDS + FTRAF K F ++P +R +A R P Sbjct: 80 ASGFDSHEGFTRAFAKHFTRSPREFRVRGVSAAIEDRSRHAELIAHVGPCVHLFRAALTP 139 Query: 118 LRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPV 177 + M + + ++++ +I+ ++ + N + Sbjct: 140 SPPAKRNMMNYDITQQSIDAMTILSKTARVEQAEIASVLGQILPAIFTHATQNGIAMTGP 199 Query: 178 LYGLNE-TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGV 236 P + + + V ++ + + G G+ Sbjct: 200 PIVRYHAWGPGMVTLEG-------GIPVVEGATGADGIEYVRIEPCTAAVAIHTGPYDGL 252 Query: 237 QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIR 288 + + + L E Y D P + + PI+ Sbjct: 253 GDAHAAI-ERYVHENGLQVAGAP-FEVYL--TDPGEVPNPEEWKTRVCWPIK 300 >UniRef50_D1AJR4 Transcriptional regulator, AraC family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AJR4_SEBTE Length = 313 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 90/310 (29%), Gaps = 25/310 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + +L ++E L L + V+ A S R+F +TG ++ YIR R+LS Sbjct: 1 MDNTKRVNMVLDYIEQQLCHELDEEAVSRIACCSFQQFLRIFSYMTGISLHEYIRRRKLS 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A L R ILD A+ Y +D+ F+RAFK TP + R Sbjct: 61 AAAEELVKNRRNILDTAVSYGYDTHSGFSRAFKMHHNATPTEIIEGIKEPQLFERLFFLS 120 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSL--------------------EQISDFRHEMR 160 + + D + +T S F + Sbjct: 121 PSSAENKTYRIEKGDLKMAKLTNIGFKSFGPYRLIGRAVDTKLMSNDIAMLWGKFFADGS 180 Query: 161 YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 + D N + + G+ + + + Y + A L Sbjct: 181 FHSLLDLCRNKENLTELPDGVA--GIMHNFGEGGSIRYLAGIIFSSAAEVPEGFDSFELP 238 Query: 221 GGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRR--KGQDIERY-YPAEDAKAGDRPI 277 G G + + + + E Y D Sbjct: 239 AGIIAESQITGEEYEIYSQGHELTVSAIESSGYIIDRENFYQCEAYTDERFSNPKKDGET 298 Query: 278 NLRCELLIPI 287 L + IP+ Sbjct: 299 ILTLDYYIPV 308 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 54/100 (54%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 ++ +L +++ HLD + L ++A S +H R+FK TG + Y+ +R+ + Sbjct: 182 RQLQQVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIEHAKQ 241 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYR 104 L+ T R I+DIA + F+S ++ F++ TP +YR Sbjct: 242 LLKQTDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_C2LMQ2 Regulatory protein n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ2_PROMI Length = 285 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 120/294 (40%), Gaps = 20/294 (6%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 II D+L W+E +L +P+S +V K+GYS+ + Q +F T I YI +R+LS S Sbjct: 2 HDKIINDILDWIEDNLTKPISTIDVIKKSGYSQRYFQDLFLHKTKSTIAKYILSRKLSMS 61 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A+ L+LT I +I+ Y F SQQ F+RAFK+ F TP YR+S W RP ++ + Sbjct: 62 AILLKLTRYSISEISNDYSFTSQQNFSRAFKRYFKVTPEFYRKSKFWDFRYYRPQHKVFD 121 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 F + + L L+ + F + N I + + Sbjct: 122 FKKINCQLIYLSKDRLLDNNSDDFKFFDISIPFDFKSNIAIEGLGYKNKKQIEIIKSLV- 180 Query: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVML---------QGGEYVMFTYEGLG 233 +D V Y L+ + + + + +G +Y +F++ G Sbjct: 181 -----DSSNDNLCVSYNYFLSSKVKNKITVKYNIKYIHDYNFSFNKEGLKYYLFSFLGSW 235 Query: 234 TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 +Y +P+L RR G DIE + LIPI Sbjct: 236 EDYMILSNIIYMRELPLLQAKRRDGYDIEIF-----NSGKLDKNICSLNYLIPI 284 >UniRef50_C0BW87 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0BW87_9CLOT Length = 333 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 34/270 (12%) Query: 2 DQAGIIRDLLIWLEG---HLD-QPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 + I+ ++ ++ + + + L+L ++ + GYS+++ R FK++ G Y+R R Sbjct: 3 EWQKQIQMIVDEIDSCIKNYNGEDLTLRFLSRRLGYSEFYTTRKFKEILGIQFRDYLRLR 62 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIR-P 116 +L+ + +R + + ILDIA Y F S + FTRAFK + TP+ YR++P+ + Sbjct: 63 KLAFALKEIRDSEKSILDIAFDYGFSSHEAFTRAFKGTYGVTPSEYRKNPKPVVLRTKIN 122 Query: 117 PLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 P + E + D I + I ++ + FW Sbjct: 123 PFDRYFLGLGEIGMIKSTDDVKIYFVTIPAHKFLHIKNYESNGYWDFWQKQNQIPGQDIE 182 Query: 177 VLYGLNETRPSQDKDDEQ----------------------------EVFYTTALAQDQAD 208 + GL ++ + DD Y L D Sbjct: 183 TICGLLDSIKGKLDDDGGSDSNSGNGQVMAYINDPDGRLCDWGILRTECYGARLPADHKG 242 Query: 209 GYVLTGHPVMLQGGEYVMFTYEGLGTGVQE 238 + + EY++F + G QE Sbjct: 243 EVPAQMLMIDIPEAEYIVFEH-GPFDYEQE 271 >UniRef50_B8I6Y6 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I6Y6_CLOCE Length = 297 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 96/304 (31%), Gaps = 36/304 (11%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 I L + E ++ LSL ++ AG+S +H R+F VTG ++ YI RRL+ Sbjct: 8 YQKKIEQALEYAEYNIGSDLSLQTISKIAGFSPYHFHRIFHSVTGKSLHQYILERRLNNC 67 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 A L I IAL + F S +F R+FKK F TP Y+++ + + L + Sbjct: 68 ASKLLYEDCDITRIALDFGFSSSSSFARSFKKHFGCTPTQYKKTKDRKYPVPFSEIVLQQ 127 Query: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAP-----TIPPV 177 + + L + + + + + T Sbjct: 128 ISFDPELEKHFNEIVLADLRTICIGVTGLSEVWENPEINRAYEQIFTWLKENKKFTSDTK 187 Query: 178 LYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLG---- 233 + G+ P + D ++ Y +F G Sbjct: 188 ICGITMDTPEVQNLSSCRYYACATAESYIHDEHLA-----------YRVFQTSGNYICCK 236 Query: 234 ---------TGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELL 284 + + +YG M + +E Y D ++ Sbjct: 237 INRCIKDFAACFFKHMDYLYGFYMVSHKFSPDNRPFVEFYERMPD-------GDIYIHFC 289 Query: 285 IPIR 288 +P++ Sbjct: 290 VPVK 293 >UniRef50_C0A4C8 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A4C8_9BACT Length = 309 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 A +R + ++E HLD+ LD +A +AG SK+H R+F+ TG + Y R+ + Sbjct: 206 ASSLRRITDFMEAHLDEEFRLDELAREAGMSKFHFCRLFRKTTGLSPSRYFIRLRMEMAR 265 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 LR T+R ++++ L+ + S F + F+++ P+ YRR Sbjct: 266 RLLRETSRSVIEVGLEVGYSSPSHFAQVFQREAGVPPSEYRRQG 309 >UniRef50_B8FUU7 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUU7_DESHD Length = 129 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 69/107 (64%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + D L ++E +LD + L+++A KA SK++ R+F VTG ++ YI RR++ Sbjct: 1 MDYRAKVYDSLDYIEENLDDRIDLEDLAQKAYLSKYYYHRLFHKVTGESVTRYITRRRMA 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSP 107 K+A L T +PI+DIAL+Y++ SQ++FTRAF + + P YR+ Sbjct: 61 KAAEELVETEQPIIDIALKYQYASQESFTRAFMRIYGLAPGKYRKIH 107 >UniRef50_C5BEG3 Transposon tn10 tetd protein (Orfr) n=2 Tax=Edwardsiella RepID=C5BEG3_EDWI9 Length = 122 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 80/109 (73%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 ++ L+ W+E +LD+ + +D++A +AGYSKW+LQR+FK+VTG+++ AY+R RRL ++ Sbjct: 7 HQLLVDALIQWIEQNLDKRILIDDIAERAGYSKWYLQRLFKEVTGYSLAAYVRKRRLIRA 66 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSA 111 A L+ + + I++I LQY FDSQQTF+RAFK+++ +P YR+ + Sbjct: 67 AAELQRSNKKIMEIMLQYGFDSQQTFSRAFKRRYGTSPGSYRQQADGDR 115 >UniRef50_B2VKB8 Regulatory protein SoxS n=1 Tax=Erwinia tasmaniensis RepID=B2VKB8_ERWT9 Length = 141 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 77/111 (69%) Query: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 II L W++ +L + LS+D VAAK+GYSKWHLQRMF+ VT +G YIR RRL+ + Sbjct: 2 HDDIINTLTHWIDNNLGKNLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLA 61 Query: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFG 113 A ALR + RP+ DIA+QY +DSQQTF+R F++QF+QTP YR + Sbjct: 62 AEALRQSHRPVFDIAMQYGYDSQQTFSRVFRRQFSQTPTDYRNTMRRQRLQ 112 >UniRef50_B9E6P5 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E6P5_MACCJ Length = 305 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 113/296 (38%), Gaps = 24/296 (8%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M ++ +++LE HL QP +LD+++ S +H+ + F +TG + Y+ +R+++ Sbjct: 24 MKSIETVQKTIVYLEDHLLQPFTLDDLSNYLEESAFHITQSFTMITGMTVEEYLHSRKMT 83 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 ++A L ++D+A +Y + S F+ AF + +P R +PE R L+L Sbjct: 84 EAANYLLNGNYRLVDVAKKYGYTSAHEFSTAFSEFHGTSPIQARANPEKLQMVHRLYLQL 143 Query: 121 GEFTMP--EHKFVTLEDTPLIGVTQS----YSCSLEQISDFRHEMRYQFWHDFLGNAPTI 174 T P + + T L+G + + + I D + + D L + T Sbjct: 144 STTTKPPAYYSIKRADHTELVGKSVRIDNQHLSNQFLIPDLIYNENQDGFIDELLHLSTN 203 Query: 175 PPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGT 234 + L+ V + +++ + +Y +F G Sbjct: 204 GKLYVTLHPDI--------TGVHIFIGVQSERS----YHYETSAINHAQYAVFHSRGHLD 251 Query: 235 GV-QEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR 289 + E ++ LN R + Y D + EL IPI R Sbjct: 252 YIFSEIWYSIEKQVDLQLNYLRNEQF---IYVLPSDYAFDNNFNK--VELWIPIER 302 >UniRef50_A8I184 Transcriptional regulator n=3 Tax=Rhizobiales RepID=A8I184_AZOC5 Length = 310 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 51/101 (50%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +R ++ ++ +L +SL +++ A S H R F+ G +I + RL ++ Sbjct: 207 KMRRVIDYINDNLASEISLSDLSDIACLSHHHFARAFRSAVGVPPHRFISSLRLQRAQEM 266 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L T + +IA RF SQ TFTRAF++ +P YRR Sbjct: 267 LAHTQSSLTEIAYSCRFSSQSTFTRAFRRHVGMSPGEYRRK 307 >UniRef50_Q6WFA3 Putative transcription factor Roh n=1 Tax=Enterobacter cloacae RepID=Q6WFA3_ENTCL Length = 134 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 55/117 (47%), Positives = 81/117 (69%) Query: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 +++D++ W+E L L ++ +A K+GYS+WH QR+FK TG A+G Y+RARRL+ +AV Sbjct: 9 SVVKDIVQWVENSLTSTLLVEEIAEKSGYSRWHFQRIFKHATGIALGEYVRARRLTCAAV 68 Query: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 L+LT + +L+IAL Y F+SQQTFTR+FK +F P YR+ W+ + PPL L Sbjct: 69 ELKLTTKTVLEIALHYGFESQQTFTRSFKNKFHLPPGRYRKQIAWNLSALCPPLLLE 125 >UniRef50_A5V467 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V467_SPHWW Length = 296 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 56/101 (55%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 +++ + ++E H+ + +SLD +A +AG S++H R+FKD G AY+ RR+ ++ Sbjct: 195 VLQRVKDYVEAHIAEDISLDMLAREAGVSRFHFIRLFKDSVGMTPHAYLIERRMVRACNL 254 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 L T + I +IA+ F+ F F++ + P +R+ Sbjct: 255 LMHTKQSIGEIAVNCGFEDPSYFAARFRRLYRMCPREFRKR 295 >UniRef50_A6TN59 Helix-turn-helix-domain containing protein, AraC type n=7 Tax=Clostridia RepID=A6TN59_ALKMQ Length = 303 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 24/253 (9%) Query: 1 MDQAGII---RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRAR 57 M++ +I + + ++E +L+ P++L ++A AGYS+WH R+FK++TG A Y+RA Sbjct: 1 MERWEVINAVQRMQDYIEQNLNCPITLSDLAKVAGYSQWHSARIFKELTGKAPFEYMRAL 60 Query: 58 RLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPP 117 RL+K+A+ LR ++D+A + FDS + FTRAF KQF +P Y SPE I Sbjct: 61 RLTKAALLLRDKRTKVIDVAFDFVFDSHEGFTRAFSKQFGVSPKKYSNSPEPIQLFIPNR 120 Query: 118 LR------LGEFTMPE---------HKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQ 162 +R M + V LI + + + + Sbjct: 121 IREYYLTLQKGEVMMSDKKRTNTVFVQVVERPSRKLIIKRGIKATHYFEYCEEVECEVWG 180 Query: 163 FWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGG 222 + N +P + + A + L Sbjct: 181 ILISIKEAMYEPAGMWLSENLIKPGTSS-----YVQGVEVPINYAGRVPEGFDVIELPPC 235 Query: 223 EYVMFTYEGLGTG 235 + ++F E Sbjct: 236 KMMVFQGE-PYED 247 >UniRef50_A9KJQ6 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=A9KJQ6_CLOPH Length = 265 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 8/194 (4%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 MD + + ++E +L +++ A G S W QR+F +T + YIR R+L+ Sbjct: 1 MDWQKGMNSAIDYIEKNLTGNVNVRTAAGFVGCSTWEFQRIFSFLTHIPLSEYIRQRKLT 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 +A ++ I+DIAL+Y ++S F+RAF K F P+ R + R + Sbjct: 61 LAAQEIKDNDVKIIDIALKYGYESPAAFSRAFNKLFGIAPSSVRNTENNLKTYPR----I 116 Query: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRY----QFWHDFLGNAPTIPP 176 + + + + G + + D +++ W + Sbjct: 117 TFEKIENERLIKMSRFSERGYVVRENGPVYFTKDMDKTVKWFEEILGWSGDIVARDDEGF 176 Query: 177 VLYGLNETRPSQDK 190 YG PS+ Sbjct: 177 GDYGCVFDYPSEVA 190 >UniRef50_B6ICR2 Putative transcription regulator n=1 Tax=Escherichia coli SE11 RepID=B6ICR2_ECOSE Length = 276 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 118/283 (41%), Gaps = 21/283 (7%) Query: 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 65 I++ +++W+E +++ + +++VA GY + ++Q +FK ++G YIR R+++++A Sbjct: 11 IVQHIILWIEDNIESTIKIEDVATITGYCRRNVQLIFKRYVHISLGEYIRRRKIARAAAL 70 Query: 66 LRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTM 125 L+ + ++DI+++ FDSQQ+FTR FKK P YR W+ + PP G+ Sbjct: 71 LKTSTLNLIDISIRLHFDSQQSFTREFKKILGVPPQKYRNRNYWNLPYLCPPYIWGKAIS 130 Query: 126 PEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185 F+ L + L + S + + +Y ++ Sbjct: 131 F--TFLELSEMVLTTDVIPGNYS-----------CFSRKETIMSYIDKYKADVYCISGYG 177 Query: 186 PSQDKDD-EQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVY 244 Q D + Y D+A + + G Y F Y+G +Y Sbjct: 178 LQQKIGDLDYRDNYIATTKNDKAHC-----KKLTIPSGLYAKFLYKGTWRDFLRLPKYLY 232 Query: 245 GTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPI 287 T +P L DI + P DA + + C IP+ Sbjct: 233 LTLLPAHGLAHMDACDI-IHIPYPDA-GLVKNNEIECTYYIPV 273 >UniRef50_B4WTP1 Transcriptional regulator, AraC family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WTP1_9SYNE Length = 294 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 54/102 (52%) Query: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 ++ ++ ++E +L Q LS+ ++A+ SK + R FK G + Y+ +R+ ++ Sbjct: 192 RSQLKRVIDYIEANLAQDLSIFDLASLTNMSKSYFSRSFKQSVGISPYQYVIQQRVERAK 251 Query: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR 105 L+ + I DIAL F +Q T+AF++ TP Y++ Sbjct: 252 QLLKQQSISISDIALDCGFANQTHLTKAFRQMTGTTPKAYQK 293 >UniRef50_P0A9E4 Regulatory protein soxS n=98 Tax=Proteobacteria RepID=SOXS_ECO57 Length = 107 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 58/106 (54%), Positives = 77/106 (72%) Query: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 M II+DL+ W++ H+DQPL++D VA K+GYSKW+LQRMF+ VT +G YIR RRL Sbjct: 1 MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLL 60 Query: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS 106 +AV LR T RPI DIA+ + SQQTF+R F++QF +TP+ YR Sbjct: 61 LAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHR 106 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.160 0.502 Lambda K H 0.267 0.0490 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,054,453,335 Number of Sequences: 3077464 Number of extensions: 111245722 Number of successful extensions: 311256 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 18741 Number of HSP's successfully gapped in prelim test: 1855 Number of HSP's that attempted gapping in prelim test: 261440 Number of HSP's gapped (non-prelim): 26078 length of query: 289 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 162 effective length of database: 649,558,428 effective search space: 105228465336 effective search space used: 105228465336 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 93 (40.2 bits)