BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (182 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammap... 375 e-103 UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammapr... 318 6e-86 UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromo... 204 1e-51 UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammapr... 199 2e-50 UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas... 184 1e-45 UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidat... 179 4e-44 UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromo... 179 5e-44 UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammapro... 165 5e-40 UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera... 159 3e-38 UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammapro... 159 5e-38 UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiel... 158 7e-38 UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammapr... 152 5e-36 UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidat... 148 8e-35 UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella ... 146 3e-34 UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothi... 144 2e-33 UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylob... 143 3e-33 UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalili... 140 3e-32 UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalk... 140 3e-32 UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylo... 139 3e-32 UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acineto... 139 4e-32 UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiat... 139 5e-32 UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine ... 138 9e-32 UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella... 138 1e-31 UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methyloc... 137 1e-31 UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammapro... 137 2e-31 UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma p... 137 2e-31 UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicr... 137 2e-31 UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanosp... 134 1e-30 UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera... 134 2e-30 UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaprot... 133 3e-30 UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallion... 130 2e-29 UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultu... 129 4e-29 UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammapro... 129 5e-29 UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylo... 126 3e-28 UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudom... 125 5e-28 UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionel... 125 6e-28 UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta pr... 124 1e-27 UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella m... 122 8e-27 UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria... 120 2e-26 UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingell... 120 2e-26 UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydro... 119 7e-26 UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammapr... 118 8e-26 UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=... 117 2e-25 UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma... 117 2e-25 UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosom... 116 4e-25 UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisser... 114 1e-24 UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelob... 114 2e-24 UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickett... 114 2e-24 UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrob... 112 8e-24 UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiob... 108 6e-23 UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteri... 108 1e-22 UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobac... 107 1e-22 UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomon... 107 2e-22 UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidith... 107 2e-22 UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkhol... 106 4e-22 UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclass... 105 5e-22 UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyc... 103 3e-21 UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candida... 102 6e-21 UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfur... 100 2e-20 UniRef50_A5CVM9 16S rRNA processing protein RimM n=1 Tax=Candida... 100 2e-20 UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francis... 100 3e-20 UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkhol... 100 3e-20 UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetoc... 99 8e-20 UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma p... 99 8e-20 UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacte... 98 1e-19 UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitroso... 97 2e-19 UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobac... 97 3e-19 UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter ... 95 1e-18 UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrh... 94 1e-18 UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera... 94 2e-18 UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermoto... 92 1e-17 UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phylloba... 91 1e-17 UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostri... 90 3e-17 UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine ... 90 4e-17 UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostri... 89 6e-17 UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthoba... 88 2e-16 UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteri... 87 2e-16 UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiob... 87 3e-16 UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipe... 87 3e-16 UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacte... 87 4e-16 UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdema... 86 4e-16 UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinom... 85 1e-15 UniRef50_Q057I4 Ribosome maturation factor rimM n=1 Tax=Buchnera... 85 1e-15 UniRef50_UPI0001698198 16S rRNA-processing protein n=1 Tax=Endor... 85 1e-15 UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotog... 83 4e-15 UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetel... 83 5e-15 UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 82 6e-15 UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfo... 82 7e-15 UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinom... 82 7e-15 UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphapro... 82 9e-15 UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2... 82 1e-14 UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialist... 82 1e-14 UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetos... 82 1e-14 UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia ... 81 1e-14 UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillon... 81 2e-14 UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Bre... 80 3e-14 UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfa... 80 3e-14 UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella... 80 3e-14 UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenz... 80 4e-14 UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttle... 80 4e-14 UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostrid... 79 7e-14 UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucl... 79 9e-14 UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacilla... 79 9e-14 UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacilla... 79 1e-13 UniRef50_Q5SJH5 Ribosome maturation factor rimM n=2 Tax=Thermus ... 78 1e-13 UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomi... 78 1e-13 UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Sel... 78 1e-13 UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidami... 78 1e-13 UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntroph... 77 2e-13 UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 77 3e-13 UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactoba... 77 3e-13 UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfo... 77 4e-13 UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanoba... 76 4e-13 UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobi... 76 5e-13 UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halother... 76 6e-13 UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobia... 75 1e-12 UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenz... 75 1e-12 UniRef50_A8F3G2 Ribosome maturation factor rimM n=1 Tax=Thermoto... 74 2e-12 UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotro... 74 2e-12 UniRef50_Q73PB6 Ribosome maturation factor rimM n=2 Tax=Treponem... 74 2e-12 UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chlorof... 74 2e-12 UniRef50_C9RLH6 16S rRNA processing protein RimM n=1 Tax=Fibroba... 74 2e-12 UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococ... 74 2e-12 UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomi... 74 2e-12 UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotog... 74 3e-12 UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillal... 74 3e-12 UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococc... 74 3e-12 UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphapro... 73 4e-12 UniRef50_A9WEK5 Ribosome maturation factor rimM n=2 Tax=Chlorofl... 72 6e-12 UniRef50_C5SJF8 16S rRNA processing protein RimM n=1 Tax=Asticca... 72 7e-12 UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosi... 72 9e-12 UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillon... 72 1e-11 UniRef50_B7A7I3 16S rRNA processing protein RimM n=3 Tax=Thermac... 72 1e-11 UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranae... 71 1e-11 UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfo... 71 2e-11 UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonel... 71 2e-11 UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbioba... 71 2e-11 UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinom... 70 2e-11 UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadec... 70 2e-11 UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepI... 70 2e-11 UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostri... 70 3e-11 UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli ... 70 3e-11 UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Maripro... 70 3e-11 UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostrid... 70 3e-11 UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospi... 70 4e-11 UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonif... 70 4e-11 UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyog... 69 5e-11 UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli... 69 5e-11 UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingom... 69 6e-11 UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobac... 69 7e-11 UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Cauloba... 69 7e-11 UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacill... 69 8e-11 UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphyl... 69 8e-11 UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococc... 69 9e-11 UniRef50_C7N9T4 16S rRNA processing protein RimM n=5 Tax=Fusobac... 69 1e-10 UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudov... 68 1e-10 UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostri... 68 1e-10 UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobac... 68 1e-10 UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfit... 67 2e-10 UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobac... 67 2e-10 UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodoth... 67 2e-10 UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobac... 67 3e-10 UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodoba... 67 3e-10 UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostri... 67 3e-10 UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobac... 67 3e-10 UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, s... 67 3e-10 UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschi... 67 3e-10 UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microsc... 67 3e-10 UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquet... 67 4e-10 UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasm... 66 4e-10 UniRef50_Q08WS7 16S rRNA processing protein RimM n=1 Tax=Stigmat... 66 4e-10 UniRef50_A7HBQ0 Ribosome maturation factor rimM n=4 Tax=Anaeromy... 66 4e-10 UniRef50_B1CC26 Putative uncharacterized protein n=1 Tax=Anaerof... 66 5e-10 UniRef50_C1SG75 16S rRNA processing protein RimM n=1 Tax=Denitro... 66 6e-10 UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacte... 65 8e-10 UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostri... 65 9e-10 UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostri... 65 1e-09 UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissel... 65 1e-09 UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermom... 64 2e-09 UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicycl... 64 2e-09 UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxyd... 64 2e-09 UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Auranti... 64 2e-09 UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfu... 64 2e-09 UniRef50_A5CF62 Ribosome maturation factor rimM n=2 Tax=Orientia... 64 2e-09 UniRef50_Q1IYA4 Ribosome maturation factor rimM n=2 Tax=Deinococ... 64 3e-09 UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa Re... 64 3e-09 UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostri... 64 3e-09 UniRef50_A9F3N7 Ribosome maturation factor rimM n=1 Tax=Sorangiu... 63 4e-09 UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechoc... 63 5e-09 UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothe... 63 5e-09 UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfo... 63 5e-09 UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseifle... 63 5e-09 UniRef50_Q1AW75 Ribosome maturation factor rimM n=1 Tax=Rubrobac... 62 7e-09 UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliph... 62 7e-09 UniRef50_Q024L7 Ribosome maturation factor rimM n=1 Tax=Candidat... 62 8e-09 UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehaloco... 62 8e-09 UniRef50_B2IDX8 Ribosome maturation factor rimM n=2 Tax=Beijerin... 62 8e-09 UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostri... 62 9e-09 UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobac... 62 1e-08 UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermob... 62 1e-08 UniRef50_Q7MA05 PUTATIVE 16S RRNA PROCESSING PROTEIN n=1 Tax=Wol... 61 1e-08 UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=... 61 2e-08 UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechoc... 61 2e-08 UniRef50_A7HKS0 Ribosome maturation factor rimM n=1 Tax=Fervidob... 61 2e-08 UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synecho... 61 2e-08 UniRef50_B9L6B3 16S rRNA processing protein RimM n=2 Tax=Nautili... 61 2e-08 UniRef50_D0LKH3 16S rRNA processing protein RimM n=1 Tax=Haliang... 60 3e-08 UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodoba... 60 3e-08 UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylob... 60 3e-08 UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobact... 60 4e-08 UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroh... 60 5e-08 UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinom... 59 5e-08 UniRef50_C1CUT9 Putative 16S rRNA-processing protein RimM n=1 Ta... 59 6e-08 UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacte... 59 7e-08 UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactoba... 59 7e-08 UniRef50_A7H4B3 Ribosome maturation factor rimM n=17 Tax=Campylo... 59 8e-08 UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramid... 59 9e-08 UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Therman... 59 9e-08 UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechoc... 59 9e-08 UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidat... 59 1e-07 UniRef50_A3PF96 Ribosome maturation factor rimM n=7 Tax=Prochlor... 58 1e-07 UniRef50_UPI00017437A2 16S rRNA processing protein rimM n=1 Tax=... 58 2e-07 UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta p... 58 2e-07 UniRef50_B0S8N9 RimM protein, required for 16S rRNA processing n... 57 2e-07 UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinom... 57 2e-07 UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomy... 57 2e-07 UniRef50_Q2VZV7 Ribosome maturation factor rimM n=3 Tax=Magnetos... 57 2e-07 UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconos... 57 3e-07 UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=... 57 3e-07 UniRef50_A6GIE2 16S rRNA processing protein RimM n=1 Tax=Plesioc... 57 3e-07 UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomon... 57 3e-07 UniRef50_C1E6K5 Predicted protein (Fragment) n=1 Tax=Micromonas ... 57 3e-07 UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Par... 57 3e-07 UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfo... 57 4e-07 UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pedioco... 56 4e-07 UniRef50_A5V9P8 Ribosome maturation factor rimM n=5 Tax=Sphingom... 56 5e-07 UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphapro... 56 6e-07 UniRef50_O67156 Ribosome maturation factor rimM n=2 Tax=Aquifica... 56 6e-07 UniRef50_C0QSS3 16S rRNA processing protein RimM n=2 Tax=Hydroge... 55 9e-07 UniRef50_Q0SMF7 Ribosome maturation factor rimM n=22 Tax=Borreli... 55 1e-06 UniRef50_Q0BRH0 Ribosome maturation factor rimM n=1 Tax=Granulib... 55 1e-06 UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthros... 55 1e-06 UniRef50_Q1JX94 16S rRNA processing protein RimM n=1 Tax=Desulfu... 55 1e-06 UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Coryneb... 55 1e-06 UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomy... 54 2e-06 UniRef50_A8L5A4 Ribosome maturation factor rimM n=2 Tax=Frankia ... 54 2e-06 UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfo... 54 2e-06 UniRef50_A6Q550 Ribosome maturation factor rimM n=1 Tax=Nitratir... 54 2e-06 UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonel... 54 3e-06 UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitre... 54 3e-06 >UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammaproteobacteria RepID=RIMM_SHIBS Length = 185 Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL Sbjct: 4 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 63 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE Sbjct: 64 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 123 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP Sbjct: 124 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 183 Query: 181 GF 182 GF Sbjct: 184 GF 185 >UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammaproteobacteria RepID=RIMM_YERE8 Length = 182 Score = 318 bits (815), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 148/182 (81%), Positives = 165/182 (90%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQL P PIVLGKMGS+YGIRGWLRVFSSTE+AESIFDYQPWFIQ+ G+WQ V+L Sbjct: 1 MSKQLNPVVPEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 E WK H+QD+IIK+KGVDDRDAANLLTNCEIVVDS QLP+LEE DYYWKDLMGCQVVTT Sbjct: 61 EDWKRHSQDLIIKVKGVDDRDAANLLTNCEIVVDSKQLPELEEDDYYWKDLMGCQVVTTA 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GY+LGK++DMMETGSNDV+V+KANLKDAFG+KERLVPFL GQVIK VDLT + +EVDWDP Sbjct: 121 GYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDP 180 Query: 181 GF 182 GF Sbjct: 181 GF 182 >UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromonadales RepID=RIMM_PSEHT Length = 178 Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 95/169 (56%), Positives = 124/169 (73%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IV+GK+G+ YGI+GWL+V S T+D IFD+ PW I + G+WQ +++ W+ HN+ I K Sbjct: 10 IVVGKLGAPYGIKGWLKVHSFTDDPAGIFDFSPWLIGQQGKWQTLEVVDWRRHNKGFIAK 69 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 V+DRD A T+ EI +DS+QLP+L +G++YW+DL+G VVT +GYDLG V D+MET Sbjct: 70 FAQVNDRDEAVAYTHAEISMDSAQLPELPQGEFYWRDLIGMSVVTDKGYDLGIVDDLMET 129 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDVLV+KAN KDAFG ERL+PFL VI +V R I VDWDPGF Sbjct: 130 GSNDVLVVKANSKDAFGQAERLIPFLTDTVIIEVKHDAREITVDWDPGF 178 >UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammaproteobacteria RepID=RIMM_SHELP Length = 176 Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 85/171 (49%), Positives = 127/171 (74%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P+VLGK+G+S+GI+GWL++ S T+ E IFDY PW I++ G+W++V++ W++ + +I Sbjct: 6 EPVVLGKLGASHGIKGWLKITSYTDSVEDIFDYSPWLIKEQGEWREVKVAQWRYQGKAII 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 L+GV RD A +LTNCEI + + + L E ++YW+DL+GC+VV T+GY +GKV ++ Sbjct: 66 AALEGVTTRDQAQMLTNCEIAIPAEAMKALPEDEFYWRDLIGCEVVNTKGYKMGKVDQIV 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETGSNDVL++KAN KD FG ER++PF+ Q I +V+L + I VDWDP F Sbjct: 126 ETGSNDVLLVKANAKDGFGKTERMIPFVTEQFILEVNLAEKQILVDWDPDF 176 >UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZI34_9GAMM Length = 175 Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 85/171 (49%), Positives = 123/171 (71%), Gaps = 1/171 (0%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +PIV+GK G+ +GI+GWL++ S T+DAESIF Y+P ++ G Q+V + WK H+ + Sbjct: 6 EPIVIGKFGAVHGIKGWLKIHSYTDDAESIFQYKPLLMKYNGVMQEVNITDWKAHSGTFV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K+K D R+ + L E++V+ ++LP LE+ D+YW+DL+GCQV T +GY LG V DMM Sbjct: 66 AKIKSFDVREESQALVGVELLVNINELPDLED-DFYWRDLIGCQVETDKGYHLGAVTDMM 124 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETGS DVLV+KAN DAFG K+RL+PF+ QV+ V++T + I V+W+P F Sbjct: 125 ETGSKDVLVVKANANDAFGQKQRLIPFIKEQVVLDVNITGKLIIVNWEPDF 175 >UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=RIMM_BLOPB Length = 189 Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 124/182 (68%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 ++K+ P+ P+V+G++ +YGI GW+R+ S TE ++IF Y P+FI W+++ L Sbjct: 8 INKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFL 67 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + WK + I+K++GV +R++A L+ C I++D +Q P + + +YYWKDL+GC V+T + Sbjct: 68 DKWKLIGKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQ 127 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LG ++ ++ET +NDVLV+K + + IK L+PFL +VIK ++L TR++ VDWDP Sbjct: 128 GVLLGDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRTVTVDWDP 187 Query: 181 GF 182 F Sbjct: 188 NF 189 >UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromonadaceae RepID=RIMM_ALTMD Length = 173 Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 80/171 (46%), Positives = 125/171 (73%), Gaps = 3/171 (1%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +++GK+G+ YG++GW+++ S TE E IF+Y PWFI G+ ++ Q++ W+ H + ++ Sbjct: 6 DKVIVGKIGAPYGVKGWVKINSYTETPEGIFEYAPWFI---GEEKEYQIDQWRPHGKSLV 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K+ GVD RD A + N +I +++SQLP L + YW++L G +VVTT+GYDLG V ++ Sbjct: 63 AKIVGVDSRDDAERIKNLDININASQLPDLGDEGVYWRELTGMKVVTTQGYDLGVVKEVF 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDV+ +KAN+ DAFG KERL+PF+ +V+++VD + I+VDWDPGF Sbjct: 123 NTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKVIKVDWDPGF 173 >UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammaproteobacteria RepID=RIMM_NITOC Length = 175 Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 75/169 (44%), Positives = 115/169 (68%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++G++ YG++GWLRV+S T+ +I DY+PW++Q+ G WQ +L + + +++ Sbjct: 14 VLVGRISGLYGVQGWLRVYSYTQPRNNILDYEPWYLQQNGAWQARRLRKGRVQGKGIVVA 73 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+G+D+RD A L CEI V QLP +EG+YYW DL+G QV+T +G LG+V ++ET Sbjct: 74 LEGIDERDVAALWVGCEIAVHRDQLPPPQEGEYYWSDLIGLQVITLQGEVLGQVDRLLET 133 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDVLV++ G +ERL+PFL G ++K+VDL + VDWDP F Sbjct: 134 GANDVLVVR-------GERERLLPFLMGMIVKQVDLQQGLLTVDWDPDF 175 >UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera aphidicola RepID=RIMM_BUCAI Length = 176 Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 111/176 (63%), Gaps = 2/176 (1%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 ++ P+ P+++GK+G SYGI GW+ +FS TE+ E IF+Y PWF K W ++Q+++W Sbjct: 3 NISINKPIQPLLIGKVGKSYGILGWINIFSFTEEQEKIFNYLPWFFFKEKNWTRIQIKNW 62 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K + + I+ +K + DR + TN +I++ LP L++ DYYW D++ +V + + Sbjct: 63 KKYKNNFIVHIKDISDRSVVSQFTNADIIISKHTLPALKKNDYYWNDIINYKVFNIDQHY 122 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG V++++ T +ND+L++K LK K L+PF+D ++IK V+ + I V WD Sbjct: 123 LGTVINLIRTRNNDILIVKNKLK--IHQKNILIPFIDNKIIKNVNTDKKFILVQWD 176 >UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_MARMS Length = 181 Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MS+ A AP +V+G++ S YG++GW++++S TE + IFDY+ W+++ W+ V+L Sbjct: 1 MSELKQAAAPEQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + + ++ +KG DRD + ++ +D+++LP+LEEGDYYW L G +V+T E Sbjct: 61 SQGRLQGRGLVASVKGYTDRDQVKDICGMDVYIDAAELPELEEGDYYWSQLEGLRVITKE 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LGKV +METG+NDV+V++A + +F +ERL+P+ G + +DL + + VDWDP Sbjct: 121 GVLLGKVSQLMETGANDVIVVRA-CEGSFDREERLIPYAPGTYVLNIDLEQQEMVVDWDP 179 Query: 181 GF 182 F Sbjct: 180 EF 181 >UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAD0_KANKD Length = 173 Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 73/167 (43%), Positives = 113/167 (67%), Gaps = 5/167 (2%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 P+++GK+ + GI+GW++VFS T+ E+I +Y PW+++ GQWQQV + + + + ++ Sbjct: 7 PLIVGKLNGASGIKGWVKVFSYTDPKENILNYSPWYLKLDGQWQQVLIINGREQGKTVVA 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +L+G +DR+ A EI +D SQLPQLEEG+YYW+DL+G VV G ++G V MME Sbjct: 67 QLEGCNDRNTAESYRGVEIAIDESQLPQLEEGEYYWRDLVGLTVVNVAGDEMGTVEKMME 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 TG+NDVLV+K K+ E L+P++ + KVDL ++ I VDW+ Sbjct: 127 TGANDVLVVKTASKE-----ELLIPYVPEYSVIKVDLESKQITVDWE 168 >UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammaproteobacteria RepID=B8GN77_THISH Length = 167 Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IVLG++ YG++GW++VFS T E I Y P + GQW++ ++ K H + +++K Sbjct: 6 IVLGRVTGLYGVQGWVKVFSETRPREEIVRYNPVLLGHEGQWRETRVVGGKAHGKGVVMK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G DDRDAA L EI V QL +L +G+YYW DL+G +VVTT G LG V + ET Sbjct: 66 FQGCDDRDAAAALMGQEIAVWREQLARLPKGEYYWADLVGLEVVTTGGESLGVVDSLFET 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV+V+K + +ERL+P++ G+ ++ VDL ++ VDWDP F Sbjct: 126 GANDVIVVKGD-------RERLIPYVRGEFVRDVDLEAGTLTVDWDPEF 167 >UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia floridanus RepID=RIMM_BLOFL Length = 185 Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 115/181 (63%), Gaps = 2/181 (1%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M + P++PIV+G++ +YGI GW+++ S TE E IF Y PWFI +W+ ++L Sbjct: 1 MKVIVINSTPINPIVIGRIKGAYGILGWVKILSFTEKIEDIFVYNPWFIFFRSKWKVIKL 60 Query: 61 ESWK-HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVT 118 E W+ +N++ I+K V DR+ A L+ +VV+S Q P+L D YYWKD++GC+++T Sbjct: 61 EYWRLMNNKNYIVKFFNVSDRNHAMALSQHNLVVESIQFPKLYNKDEYYWKDIIGCKIMT 120 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G LG+V+ +++T ++D+LV+++ + L+PF+ ++IK VDL + VDW Sbjct: 121 INGKCLGRVISIIDTKAHDILVVRSEEYGFTKYVDCLIPFILKKIIKDVDLIKNIVVVDW 180 Query: 179 D 179 + Sbjct: 181 E 181 >UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RIMM_HAHCH Length = 173 Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 2/172 (1%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHHNQDM 70 + + +GK+ YG++GWL+V S T E++ Y W +++ G +L S K + + Sbjct: 3 EKVCIGKIVGVYGVKGWLKVRSFTSPPENMLRYANWELVREDGNRSSAKLRSGKPQGKGI 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +I L GVDDR+ A C+I ++SS+LP LEEG+YYW+ L G V T+EG ++G+V + Sbjct: 63 VIALAGVDDRNLAKSYVGCQIEIESSELPALEEGEYYWRQLEGLTVFTSEGVNIGRVSHL 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDVLV+ + ++ +ERL+P+L GQ I+ +DL + VDWDP F Sbjct: 123 IETGANDVLVVIGS-AESIDKRERLIPYLPGQFIENIDLDKNLMVVDWDPDF 173 >UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVJ7_HALNC Length = 178 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 112/184 (60%), Gaps = 13/184 (7%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK------AGQWQQV 58 L +P D +V+G +G ++G++GW + + T A+ I Y+ WF++ AG+W +V Sbjct: 2 LKPPSPADSVVIGVIGRAFGVKGWSWITTYTRPADGITQYRQWFVRSPADGGDAGKWYRV 61 Query: 59 QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 + +Q ++ KL+G+DDR A LT EI+V + LP++ EG+YYW+DL GC+V Sbjct: 62 T--KFAAQSQGIVAKLEGIDDRTQAEALTGAEILVPTDALPKVAEGEYYWRDLTGCRVQH 119 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G D G V +++ETG+NDVLV+ G +ERL+PF+ V+ +++ R I VDW Sbjct: 120 VSGQDFGVVQELLETGANDVLVVGGE-----GQRERLIPFIPDDVLVSINIDQRLIVVDW 174 Query: 179 DPGF 182 DP F Sbjct: 175 DPDF 178 >UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylobacillus flagellatus KT RepID=RIMM_METFK Length = 173 Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 112/174 (64%), Gaps = 13/174 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----QKAGQWQQVQLESWKHHNQ 68 +++G++ + YG+ GW++V +TE +S+FDY W + ++ QWQ ++E K HN Sbjct: 8 VIMGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVEKAKVHND 67 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++KL+G+DDRD A + V +LP+ EEG+YYW DL+G QV + D G+VV Sbjct: 68 LLLVKLQGIDDRDQAFSCKGMYVAVYRDELPEPEEGEYYWSDLIGLQVRNQQEVDFGQVV 127 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ TG+NDVLV+K G +ERLVPF+ GQV+ +VD +++ VDWDP F Sbjct: 128 DVFATGANDVLVVK-------GDRERLVPFI-GQVVLEVDTDGKTMLVDWDPEF 173 >UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMM_ALHEH Length = 170 Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 104/172 (60%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQDM 70 D + +G++ +G+RGW++V+S TE E+I DY W++++ G W V+ + + + + Sbjct: 6 DIVPMGEVVGLHGVRGWVKVYSHTEPREAILDYPHWYLRRDDGDWVPVERTAGRCQGKGL 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + + V+DRD A +I V LP+L EG YYW DL G TT G LG+V + Sbjct: 66 VAAFRDVEDRDRARAYIGLQIGVPRRDLPELPEGQYYWADLEGLAAYTTGGEPLGRVSHL 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDVLV++ G +ERLVPF+ GQ +++VDLT IE+DWDP F Sbjct: 126 FATGANDVLVLQ-------GDRERLVPFVYGQTVRRVDLTAGRIELDWDPDF 170 >UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMI0_9GAMM Length = 169 Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G++ YG++GW+R+FS TE +I D+ +++ W+ V++E+ + H +++K Sbjct: 8 IRVGRVSGVYGVKGWVRIFSETEPRAAIADFPHLWLRAGADWRLVEVEAGRAHGHGVVMK 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 DR+AA L E+ ++ LP E+G+YYW DL+G +V +G LG++ MET Sbjct: 68 FAETADREAAYGLMGAELAIERDWLPPAEDGEYYWADLLGMKVEHQDGTALGRISGFMET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDVLV++ G +ERL+P++ GQ I VDL R + VDWDP F Sbjct: 128 GANDVLVVR-------GDRERLIPWVRGQYILDVDLEGRRLRVDWDPEF 169 >UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WZ27_METML Length = 196 Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 23/191 (12%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G++ + YG+ GWL+V TE + +FDY W++ K W+++ +E+ K HN +++K Sbjct: 7 VVMGRIVAPYGVYGWLKVVPDTEAIDGLFDYDSWWLGKGDDWREMVVETAKIHNDVIVVK 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L G+DDRDAA +I V +QLP+ +E +YYW DL+G +V ++G D G + ++ ET Sbjct: 67 LVGIDDRDAAFACKGKQIAVPRAQLPEPDENEYYWSDLVGLRVTNSQGVDFGVITEVFET 126 Query: 134 GSNDVLVIKANL---------------KDAFGI-------KERLVPFLDGQVIKKVDLTT 171 G+NDVLV+K + DA + +ERL+PF+ V+ VDL Sbjct: 127 GANDVLVVKPDALVKPDSSAKADSKAKSDAVPVEAGKDKPQERLIPFV-ADVVLTVDLEA 185 Query: 172 RSIEVDWDPGF 182 +S+ VDWD F Sbjct: 186 KSMLVDWDEDF 196 >UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acinetobacter RepID=RIMM_ACIAD Length = 182 Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 110/177 (62%), Gaps = 6/177 (3%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 T P D I +G++ S+YG+ GWL V+S+TE ++FDY PWFI+ WQ V ++ WK Sbjct: 4 TQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKP 63 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV----TTEG 121 H + +++ LK V DR+AA L I V SQLP+ + +YYW DL G V+ + Sbjct: 64 HGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQE 123 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +LG++ ++ ETG+NDV+V++A D+ +ER++P+ V+++VDL I V+W Sbjct: 124 VNLGQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW 178 >UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiatoa sp. PS RepID=A7BX44_9GAMM Length = 168 Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 102/169 (60%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I++G++ YG+ GW+++FS T I +Y PW + + GQWQ + + K H + +I + Sbjct: 7 IIIGRINGLYGVSGWVKIFSYTTPITKILEYSPWQLCQKGQWQILSMYEGKAHGKGIIAR 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+ DRD A L +I + SQLP + + +YYW DL+G V+ + LG V ++ET Sbjct: 67 LESSHDRDEAVRLLGADIAIFRSQLPPVSKNEYYWNDLLGLTVINHDNITLGIVDHLLET 126 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ND+LVIK G KE L+PF+ QVI ++DLT R I VDWD F Sbjct: 127 GANDILVIK-------GEKECLIPFVLEQVILEIDLTQRIIRVDWDKDF 168 >UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RY72_9GAMM Length = 183 Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 7/173 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P+ GK+ YGI+GW+++ S T+ AE++F + W +Q+ G V+ + WK + M+ Sbjct: 7 NPLTAGKITGCYGIKGWVKIHSFTDPAENLFRFGKWMLQRRGALVAVEFDHWKPQGKGMV 66 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE---GYD---LG 125 + GVDDRD A +IVV++ LP LEEG++YW+ L G Q E G D LG Sbjct: 67 AHIAGVDDRDLAESYKGLQIVVEADSLPPLEEGEFYWRQLQGLQAWGREPDSGDDRVLLG 126 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V ++ETG+NDVLV+KA D+ KERL+P+L G + +VDL I++DW Sbjct: 127 TVDYLIETGANDVLVLKAT-GDSIDDKERLIPYLPGDTVSRVDLEEAVIDIDW 178 >UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella burnetii RepID=RIMM_COXB2 Length = 168 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 107/173 (61%), Gaps = 7/173 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 P D +++G++ YG+RGW++V S T +++ ++ W IQ +WQ ++L++ K H Sbjct: 3 PNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHEPF 62 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++KL+ +DD + A TN I ++ L L+EGDYYW DL+G VV T G +LG V Sbjct: 63 LVVKLENIDDPETAKHYTNDLIAIERGALGALKEGDYYWTDLIGLAVVNTHGIELGTVDS 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETGSNDVLV+++ +ERL+P+ I+ +DL + I V+WD F Sbjct: 123 LIETGSNDVLVVRSKE------RERLIPY-TSYTIQSIDLEKKIIVVEWDADF 168 >UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methylococcus capsulatus RepID=RIMM_METCA Length = 172 Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G++ ++G+RGW++ S T+ ++ Y+PW +++ ++ + + H +I++ Sbjct: 11 VVVGRVSGAFGVRGWVKAVSFTDPPVNLVGYRPWTLRRGDAERRADVLEGREHGNAVIVR 70 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+GVD R+ A L E+ V SQLP G+YY DL+G +VV LG+VVD+MET Sbjct: 71 LQGVDTREQAEALKGFEVTVRRSQLPPPAPGEYYRVDLVGLKVVNLGETVLGEVVDVMET 130 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDVLV++ G +ERL+PF+ G +K V+L I VDWDPGF Sbjct: 131 GANDVLVVQ-------GDRERLLPFVQGVFVKSVNLEESRIVVDWDPGF 172 >UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_CHRSD Length = 184 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/169 (39%), Positives = 104/169 (61%), Gaps = 1/169 (0%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +VLG++ S YG++GWL+V+S T E IF++ W + K G+ + +L + H + ++ Sbjct: 17 VVLGRLTSPYGVKGWLKVYSYTSPIEGIFEHAEWVLSKRGERRACKLSQGRPHGKGLVAS 76 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+G+ R+ A +I++ LP L GDYYW L G +V T +G LG+V + ET Sbjct: 77 LEGISSRELAEQWAGADILLPKQALPALAPGDYYWYQLEGLRVETLDGECLGQVNYLFET 136 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDVLVI+ + + + +ERL+PFL VI++VDL + VDWDP F Sbjct: 137 GANDVLVIRPS-EASLDERERLLPFLPDDVIRQVDLDAGRMIVDWDPEF 184 >UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YSV4_9GAMM Length = 173 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 107/172 (62%), Gaps = 5/172 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G++ + +G+RGW++V + TE E++ YQPW I + +Q++ W+ H + ++ Sbjct: 4 LVVGRITAVFGVRGWVKVHAYTEKVETLCSYQPWLIDTPAGVKPIQIDEWRRHGESLVAH 63 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT---EGYDLGKVVDM 130 + G+DDRD A +I+V+ +LP+L+ DYYW L G VV+ E LG V + Sbjct: 64 IAGIDDRDIAQTWCGNDILVEKDKLPELKSDDYYWHQLEGLSVVSHYEGEQIRLGTVKSL 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDVLVIK + ++ +ERL+P++D Q + + + R I+V WDP F Sbjct: 124 LETGANDVLVIKGD-AESIDREERLIPYVD-QFVTSISMVDRRIDVIWDPAF 173 >UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RIMM_THICR Length = 181 Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 108/169 (63%), Gaps = 5/169 (2%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN--QD 69 + I+LG++ YG++GW+++FS T+ ++I Y PW ++ +W+ Q+E + + Sbjct: 8 EKIILGQINGIYGVQGWVKIFSHTDPRQNILSYSPWLVKVKNEWRTFQVEEGRAQQGGKS 67 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ KL+G+DDRD A CEI + QLP EEG +YW L+GCQV + EG DLG+V + Sbjct: 68 VVAKLEGIDDRDLAREYIGCEIAILPEQLPATEEG-FYWMQLIGCQVTSVEGEDLGQVTE 126 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ETG++DVL ++ DA G+ L+PF+ I VD+ ++ I+VDW Sbjct: 127 IVETGAHDVLRVEKQ-SDA-GLVSTLIPFVMETFILDVDVESKQIQVDW 173 >UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanospirillales RepID=RIMM_ALCBS Length = 196 Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 112/179 (62%), Gaps = 11/179 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK----------AGQWQQVQLESW 63 +V+G++ +G++GW++V+S T+ ++ YQPW +++ AG W+ V++ + Sbjct: 19 VVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTGF 78 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + + +I +L+GV DR+AA L +I V + LPQ +G+YYW+DL+G +V G D Sbjct: 79 RPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGMD 138 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V M+ETG+NDV+V++ + +++ +ERL+P+L VI + L + VDWDP F Sbjct: 139 LGSVTRMVETGANDVVVVRGD-RNSLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF 196 >UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RIMM_BUCBP Length = 180 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 106/170 (62%), Gaps = 1/170 (0%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + K G+++GI GW+RVFS TE E+IFDY PWFI+K + ++ + WK + ++K Sbjct: 10 LTIAKFGAAHGILGWIRVFSYTEKKENIFDYVPWFIKKEQKIIKILPKYWKILKKTFLVK 69 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + V++R A LTN +I+++ LP+L +YYWKD++ C V T LG+V +++ T Sbjct: 70 INDVNNRSMAQKLTNYDILINQKTLPKLNNNEYYWKDIVDCTVFDTNFIKLGRVSELIRT 129 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV-DWDPGF 182 SND+LV+KA+ + L+PFL Q+I +V++ + I + +W F Sbjct: 130 PSNDILVVKASNIKNISQNDMLIPFLHPQIISEVNINNKKIVIKNWKQTF 179 >UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaproteobacteria RepID=RIMM_THIDA Length = 189 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 8/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G++ + +G++GW++V +ED ++ D++ W + + Q Q +E+ + H + ++ K Sbjct: 29 VVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVEAVQDHGKSLVAK 88 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L G+DDRDAA L E+ V S LP EE ++YW DL+G V+ EG +LGKV +ME+ Sbjct: 89 LVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREGVELGKVDSLMES 148 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G++D+LV+K G +E L+PF+ + KVDL ++EVDW Sbjct: 149 GAHDLLVVK-------GRREHLIPFV-AAFVGKVDLAGGTVEVDW 185 >UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallionellaceae RepID=C5V5Y4_9PROT Length = 186 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 105/170 (61%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMII 72 +++G++ S++GI+GW+++ +E +S+ Y+ W++ + G W++V + + H++ + Sbjct: 22 VIMGRVASAFGIKGWVKIQPFSEYVDSLLGYKTWYLGHENGPWREVTVAQCETHDKTLAA 81 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + DR AA L I V S LP EEG+YYW DL+G V+ G LG V++++E Sbjct: 82 QFPDCPDRTAAEKLKGLLIAVPRSSLPTQEEGEYYWADLIGMSVINGAGETLGTVIELLE 141 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDVL+++ N D L+PFL+ VI VD+TT++I+V+W F Sbjct: 142 TGANDVLIVRGNGPDV------LIPFLN-SVIGPVDVTTKTIQVNWSADF 184 >UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KCL6_9GAMM Length = 190 Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 8/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++GK+ +GI+GW++VFS T ++I YQPW I+ GQWQ + + + + ++ + Sbjct: 30 LLVGKINGLFGIQGWVKVFSHTNPRKNILSYQPWHIEVNGQWQTLDIIKGREQGKTLVAQ 89 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +K V D D A +I ++ SQLP+L +G+YYW+DL+G V+ E LGKV +++T Sbjct: 90 IKDVHDMDQARTFIGIDIYINKSQLPKLNKGEYYWEDLIGLNVINQEKIVLGKVSGLVDT 149 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSN VLV+ G KE VP+++ +I VD+ + I VDWD F Sbjct: 150 GSNSVLVVN-------GRKEHWVPYIEPFLI-SVDIDKQQIVVDWDDNF 190 >UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_SACD2 Length = 183 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 110/172 (63%), Gaps = 4/172 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G++ +GI+GW+++ S T+ +++ +Y P ++ ++ ++ ++ Q ++++ Sbjct: 13 ITVGRITGVFGIKGWVKLKSFTDPQDNVLEYSPLLLKTKHGVKECEIAEYQFRPQGLVVR 72 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EG--YDLGKVVDM 130 LKGVDDR+AA L ++ +D S LP+L++ D+YW L G +VVT EG DLG V + Sbjct: 73 LKGVDDRNAAEALAPVDVAIDKSLLPELDDDDFYWHQLEGLRVVTIYEGNTQDLGVVSKV 132 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 M TG+NDVL +K + + + ++RLVP++ +KKVDL+ I VDWDP F Sbjct: 133 MATGANDVLEVKPDAQ-SIDDRDRLVPYVLDLYVKKVDLSAECITVDWDPEF 183 >UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9Z5_9GAMM Length = 172 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 101/165 (61%), Gaps = 4/165 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +GK+ ++GI+GW++VFS T+ +I +Y P F+ + G+W ++++ + +++ Sbjct: 8 IPVGKISGAFGIKGWVKVFSFTDPRTNILEYSPLFLSRQGEWIEIKVSGGHLQGKGVVMG 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + V DRD L E+ + QL EE ++YW DL G V+ E LG+V ++ET Sbjct: 68 IANVTDRDQVQPLIGSELAIKKEQLEPAEEDEFYWSDLQGLTVMNLEDETLGQVDHLLET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+NDVLV+KA ++ ERL+PF+ +++K VDL + I+VDW Sbjct: 128 GANDVLVVKAKGENT----ERLIPFVMEEIVKAVDLDKQLIQVDW 168 >UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudomonadaceae RepID=RIMM_PSEU2 Length = 179 Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 113/178 (63%), Gaps = 3/178 (1%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLESWK 64 T + D IV+GK+ S +G+RG ++V+S T+ ++ DY+ W +++ G +QV+L S + Sbjct: 4 TPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVSGR 63 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 ++ ++ KLKG+DDR+ A LL+ EI V + P L++G+YYW L G +V+ G L Sbjct: 64 LQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQLL 123 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GK+ ++ETGSNDV+V+K + +ERL+P+ + Q + +D+ ++VDWD F Sbjct: 124 GKIDHLLETGSNDVMVVKP-CAGSLDDRERLLPYTE-QCVLAIDMAAGEMKVDWDADF 179 >UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionella RepID=RIMM_LEGPA Length = 169 Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++G+ G +GI+G++ V S T+ A++I Y W + QWQ ++L + + ++ +I + Sbjct: 8 VIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQ 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 ++G +R+ + LTN +I V SQL L G+YYW L+G V+ ++G GKVV++M T Sbjct: 68 IEGYPERELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPT 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDVLV++ G K L+P+L GQ + +D + + I VDWD F Sbjct: 128 GSNDVLVVE-------GEKRHLIPYLPGQFVINIDESQQVITVDWDMNF 169 >UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta proteobacterium KB13 RepID=B6BW84_9PROT Length = 165 Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/170 (40%), Positives = 108/170 (63%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMII 72 +++GK+ S+YGI+GW+++ TE A++ Y+ F+ + + W +V+++ K QD+I Sbjct: 5 VIIGKIISAYGIKGWVKIRPFTETAKNFIQYKTQFLSRNQKDWNRVEIKEIKIQGQDVIA 64 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + G+ DRD + + + QLPQL E ++YW DL+G +V+ + DLGKVV ++E Sbjct: 65 DI-GLTDRDQSISHKGYFLAIARDQLPQLPEDEFYWDDLIGLKVIDVDREDLGKVVGLIE 123 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDVLV+ G +ERL+P++ QVIKKVD + IEVDWD F Sbjct: 124 TGANDVLVVS-------GDRERLIPYI-PQVIKKVDTHNQLIEVDWDKEF 165 >UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella marisrubri RepID=Q1MYQ9_9GAMM Length = 176 Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 3/177 (1%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 ++ P + +GK+ YGI+GW++V+S TE E++F Y W + K GQ V++ W+ Sbjct: 2 SKIPDNFTKIGKITGVYGIKGWVKVYSYTEPKENVFSYDGWHLVKKGQLVPVKVREWRTQ 61 Query: 67 NQDMIIKLKGVDDRD-AANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 + ++ L DR+ A C++V+D QLP+ EG++Y+ L G VVTT+ LG Sbjct: 62 GKGLVAALDDCQDRNQAQEQYVQCDVVMDKGQLPEPGEGEFYYHQLEGLLVVTTDDVVLG 121 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +V + TG+NDVLV+K K++ +ER +P+ + K VDL I VDWDP F Sbjct: 122 RVDYLFNTGNNDVLVVKP-CKESLDGRERWLPYTN-DCTKDVDLKQGFIRVDWDPEF 176 >UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria RepID=RIMM_RUTMC Length = 189 Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 102/169 (60%), Gaps = 8/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++G++ S +G++GW+++FS T E+I YQPW I WQ +++ + ++ + Sbjct: 29 LLIGQINSLFGVQGWVKIFSHTHPRENILFYQPWHINVDANWQTLEIIQGCVQAKTIVAQ 88 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +K V D++ A ++ + SQLPQL+ G+YYW DL+G +V+ LGKV ++++T Sbjct: 89 IKDVFDKEQARAYIGIDLYIKKSQLPQLKSGEYYWDDLIGLEVINKAKIILGKVSNLVDT 148 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSN+VLVI G +E VP++ +I KVD+ + I VDWD F Sbjct: 149 GSNNVLVIN-------GEREHWVPYISPFLI-KVDIDNQIILVDWDENF 189 >UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GME9_9NEIS Length = 169 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G + ++GI+GW++V S+TE +S+ DY W + K + ++ES K ++ +K Sbjct: 8 VAMGYIKGAFGIKGWIKVQSNTEYTDSLLDYPQWRLSKGKEHILAEVESGKMAGDELQVK 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L + DRDAA LL I V Q EEG+YYW DL+G V EG LG+V+++MET Sbjct: 68 LAHIHDRDAAALLRGYTIEVPREQFEPTEEGEYYWADLVGMAVKNREGIHLGEVINLMET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G++D+L+++ E+L+PF++ Q I VD R I DW Sbjct: 128 GAHDILIVRGEH------GEKLIPFVE-QFIDNVDNENRQITCDW 165 >UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXB2_9GAMM Length = 185 Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 106/174 (60%), Gaps = 3/174 (1%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 T +A +G++ YGI GWL VFS TED E+IFD QPW I A + + +++W+ Sbjct: 10 TNEANASLFKIGELKKPYGIHGWLWVFSFTEDREAIFDMQPWVINTAMGQKTLTVKNWRQ 69 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT-TEGYDL 124 + +++L V DR+ A + + + + + L +L E +YYW DL+G V++ +E L Sbjct: 70 QGKGYVVQLNEVPDRNIAETMFSVSLWAEKNNLSELAENEYYWSDLIGLTVISQSENVIL 129 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+V ++ ETG++ ++V++ D+ +ERL+P+ Q + +V+LT +++ VDW Sbjct: 130 GRVKELFETGAHAIMVVEPT-ADSVDGEERLIPW-HKQTVGEVNLTEQTLMVDW 181 >UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammaproteobacteria RepID=RIMM_XANC5 Length = 180 Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMII 72 I+LG++ ++G++G L++ S TE +IF YQPW ++ +GQ V + +++I Sbjct: 18 ILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRDQGKNLIA 77 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 GV DRD + EI V S LP + +YYW DL QV T EG LG V + Sbjct: 78 VFPGVTDRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFS 137 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TGSNDV+V++ G +ER++PF+ +K VD I VDWDP F Sbjct: 138 TGSNDVVVVR-------GDRERMIPFVFPDFVKSVDFDANLIVVDWDPDF 180 >UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E31 Length = 167 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 9/172 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDM 70 D +++GK+ +GI+GWL+V TE+ ++ +Y W I K W ++E+ ++ + Sbjct: 4 DVVIMGKIVGPHGIKGWLKVHPFTEEIGTLSNYPQWLISKDEKHWVGHKVETATVKDKTL 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++KL G+DDR+ ++ + + + +LP+L+ YYW DL+G V GY G + M Sbjct: 64 LVKLVGIDDRNGSDSVNKNMVGILKEELPKLDADTYYWSDLIGLDVQNEAGYYFGSIQTM 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 METGSNDV+VIK G +E L+P+L VI KVDL + + VDWD + Sbjct: 124 METGSNDVMVIK-------GEREFLIPYLP-DVIIKVDLEAKKVLVDWDENY 167 >UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHP4_9GAMM Length = 198 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 23/191 (12%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-----WQQVQLESWKHHNQ 68 +V+GK+ + YG++GW++V S T+ E+I YQ +++ + WQ + + K+H + Sbjct: 9 VVIGKITAVYGVKGWVKVHSFTDPMENILGYQSYYLSGGNKGTGESWQSLSFDEVKYHGK 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT--------- 119 ++ ++GV DR+ A +I + S++P+L+ D+YW+DL+G +V + Sbjct: 69 GLVALIEGVSDREVARGYCQRDIAIPISEMPELDTDDFYWRDLIGLKVFSVNIADEHDAD 128 Query: 120 --------EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 G LG V MMETG+NDVL +K + +ERL+P+L QV+K VD+ Sbjct: 129 TEQIDPVGHGVLLGAVHQMMETGANDVLAVK-QCDGSIDDQERLIPWLPDQVVKHVDIEA 187 Query: 172 RSIEVDWDPGF 182 I+VDW F Sbjct: 188 GFIQVDWPVDF 198 >UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosomonadaceae RepID=RIMM_NITMU Length = 168 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 10/169 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMII 72 +++G++ Y + GW++VF TE + + DY W++ + G+W + ++ + H ++ Sbjct: 2 VIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLLA 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD---YYWKDLMGCQVVTTEGYDLGKVVD 129 L+ DRDAA L +I + LP L E YYW DL+G V+ +G LGKV Sbjct: 62 SLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVAG 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ETG+NDVL ++ N ++ ERL+PF+D QVI KVDL I VDW Sbjct: 122 LLETGANDVLQVQ-NPEET----ERLIPFID-QVIIKVDLAAGRITVDW 164 >UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisseriaceae RepID=RIMM_NEIG1 Length = 169 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G + +GI+GWL++ ++TE ++S+ DY W + K G+ V LE+ K N ++ +K Sbjct: 8 VAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVVNGELQVK 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G+DDRD+A L I + EE +YYW DL+G VV + LGKV ++MET Sbjct: 68 FEGIDDRDSAFSLRGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDDTVLGKVSNLMET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+NDVL+I + L+PF+ Q I+ VD +++I DW Sbjct: 128 GANDVLMIDGEH------GQILIPFV-SQYIETVDTGSKTITADW 165 >UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMM_DICNV Length = 175 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I LG++ +G+RGW+++ S E+IF+Y + + Q ++L + + +I Sbjct: 8 IALGRIIGVHGVRGWVKIHSECRPREAIFNYSVFQATRHHHAQTLKLLDARRSGKSLIAL 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + DRDAA L + V + LPQL+ G YYW D++G V+ G LGKV D+ ET Sbjct: 68 FADICDRDAALQLNGFTLNVTRADLPQLKNGQYYWTDVLGLTVINRSGEHLGKVCDIFET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+NDVLVI KD +E L+PF+ + I ++D + + VDW Sbjct: 128 GANDVLVIN---KDG---QEYLIPFISERYIDRIDFENKYLYVDW 166 >UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickettsiella grylli RepID=A8PP11_9COXI Length = 170 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/172 (36%), Positives = 91/172 (52%), Gaps = 10/172 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH---HNQDM 70 I++G +G YGI GW+++ S TE ++ DY+PW+++ G+ L K H Q + Sbjct: 6 ILVGSIGKPYGINGWVKINSYTEPFTNLIDYRPWYLEAPGKRSSPILVGVKKCCLHGQQL 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + + ++A TN +I V+ Q L G+YYW DL G +V E LG + + Sbjct: 66 LALFENSTTPESARFYTNYKIYVERDQFFPLHAGEYYWADLEGLKVYNRENIYLGIIQII 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDVLVI K LVPFL Q I+ +DL T+ + VDWD F Sbjct: 126 FATGANDVLVISDK-------KRYLVPFLFNQTIQSIDLKTKIMIVDWDANF 170 >UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrobacter RepID=RIMM_PSYCK Length = 177 Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 98/163 (60%), Gaps = 2/163 (1%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ YGI+GWL VFS T+D +IFD +PW+++ A + + +++W+ ++ + + Sbjct: 13 IGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTVKAWREQGTGIVAQFE 72 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 + DR+ A + + V+ LP+ E +YYW DL+ +V+ + LG + +M ETG+ Sbjct: 73 QIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQDEYLGDITEMFETGA 132 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 + ++ + A D+ +ERL+P+ Q + KVDLT +++ V W Sbjct: 133 HAIMRVAAT-TDSLDKEERLIPW-HKQTVVKVDLTEKTVLVAW 173 >UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6Y0_9GAMM Length = 182 Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 98/167 (58%), Gaps = 5/167 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ-QVQLESWKHHNQDMII 72 I++G++ +GIRG ++V S ES+F Y+ + ++ G+ +QL + + ++ Sbjct: 8 IIVGRIVGVHGIRGQVKVHSDCRPRESLFQYRQFIARQNGRPDIALQLLRGQTSGKGLVA 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 G++DRD A L + + QLP ++G+YYW DL+G +V +G LG+V ++ E Sbjct: 68 AFTGINDRDQALALGGYTLYISRDQLPAPQDGEYYWADLIGLRVENRQGITLGRVSELFE 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 TG+ND+LV+KA+ A E L+PF+ + ++ +DL + VDW+ Sbjct: 128 TGANDILVVKADNSKA----EILIPFVRPRYVEAIDLANGLMRVDWE 170 >UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteria RepID=RIMM_POLNA Length = 202 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 15/191 (7%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-----------GQ 54 ++ P D + +G++ ++G++GW+++ + D E++F + W++Q Sbjct: 13 SSSLPDDALEVGRILDAWGVKGWVKILPHSTDPEALFSAKTWYLQTPDVKFRPGFSLFSG 72 Query: 55 WQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGC 114 ++++ K H+ ++ K G+DDRDAA L I + S P +YYW DL+G Sbjct: 73 TVSLKVDEAKIHSGAVVAKFSGLDDRDAAEALRGARIFLSRSSFPAASADEYYWVDLIGL 132 Query: 115 QVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIK---ERLVPFLDGQVIKKVDLTT 171 V+ EG LG V D+M TG + VL ++ G ER++PF+ + KVD+ Sbjct: 133 NVLNREGVALGCVRDLMATGPHSVLCVEYASTQEDGTSATAERMIPFV-AAYVDKVDIAG 191 Query: 172 RSIEVDWDPGF 182 + I VDW P + Sbjct: 192 KCITVDWQPDY 202 >UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobacteraceae RepID=RIMM_JANMA Length = 179 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 99/176 (56%), Gaps = 7/176 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 + P D +++G + +YG+ GW+RV + DA+++ + W++ K ++ V++ K H Sbjct: 2 KVPEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKP-EFHDVEMMQSKIHT 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 D++ KL GV RDAA L + + S P L + ++YW DL+G +V +G LG+V Sbjct: 61 GDVVAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQV 120 Query: 128 VDMMETGSNDVLVI----KANLKDA-FGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 DMM+ G++ +L + A D +E L+PF++ Q + VD T + I VDW Sbjct: 121 SDMMDNGAHPILRVAVPQAAETTDPKAAPQELLIPFVE-QFVITVDRTAKKITVDW 175 >UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomonas intermedia K12 RepID=C7I5F5_THIIN Length = 180 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 99/177 (55%), Gaps = 5/177 (2%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG---QWQQVQLESWKHH 66 P D ++G + ++G+RGW++V A ++ + W++ + G + + + + H Sbjct: 4 PDDLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLVRRH 63 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ L+G +DR A L +I V + P +EG++YW DL+GC+V + EG DLG+ Sbjct: 64 GSALVALLEGPEDRSGAEALRGRQIAVRRADFPPPDEGEFYWADLIGCEVRSPEGADLGR 123 Query: 127 VVDMMETGSNDVLVIKANLKDA-FGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V+ +ME+ ++ VL ++ A +ERL+PF++ ++ VDL ++I WD + Sbjct: 124 VIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIV-SVDLPAKTIIALWDASY 179 >UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidithiobacillus RepID=B7J947_ACIF2 Length = 171 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 92/165 (55%), Gaps = 8/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +VLG++ YG+RG ++VFS TE +SI DY PW++ + LE + + ++ K Sbjct: 11 VVLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGP--DRRPWVLEDGRMQGEGVVAK 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L V+DR+ A L EI V + LP+L G++YW L G +V+ EG LG V +ET Sbjct: 69 LAQVEDREQARALIGQEIAVIRADLPELGAGEFYWSTLTGLRVLNREGIVLGTVSAFLET 128 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+NDV+VI D G E L+P+ + VDL I VDW Sbjct: 129 GANDVMVI----DDGKG-GELLIPW-SAEASAGVDLPAGQIVVDW 167 >UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkholderiaceae RepID=RIMM_BURPP Length = 248 Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 7/179 (3%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTE---DAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 P D + +G + +YG++GW++V + + +++ + W++ K + + K H Sbjct: 71 PADAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERKSAPSLQAKMH 130 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++ L GV DRD A L + + S+ P L ++YW DL+G VV G +LGK Sbjct: 131 SDSVVAHLGGVTDRDVALALRGSRVYISRSEFPALGADEFYWVDLLGLDVVNVAGVNLGK 190 Query: 127 VVDMMETGSNDVLVIKANLKDAFG---IKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V DM++ G++ VL I+ D G I ERL+PF+ G +K VD + I VDW+ + Sbjct: 191 VADMIDNGAHSVLRIEYPDTDKSGKPVIGERLIPFV-GVFVKTVDQAAKQITVDWEADY 248 >UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclassified Gammaproteobacteria RepID=A4ADG3_9GAMM Length = 179 Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 99/170 (58%), Gaps = 4/170 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 ++ GK+ +YGI+GW++V T+ ++ F ++ + + GQ + ++L + + + + Sbjct: 9 LLAGKITGAYGIKGWVKVQVFTDPPDNFFAFRHHQVLRRGQLETIELVDGRSQGKGWVAR 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD---LGKVVDM 130 + GVD+R A LL EI V S+LP L +YYW L G QV G LG+V + Sbjct: 69 VVGVDNRTDAELLRGTEIWVPQSELPVLASDEYYWHQLQGLQVWCEHGEQRLLLGEVDHL 128 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +ETG+NDVLV++++ + + +ERL+P+L V+ VD ++ V+W P Sbjct: 129 LETGANDVLVLRSS-EGSIDERERLIPYLPDSVVLAVDTEAGTMTVNWHP 177 >UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyclaceae RepID=RIMM_DECAR Length = 170 Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 7/168 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D +VLG++ YGI+GWL ++ +D + + W+I + G+ W++ +L+S K H + Sbjct: 5 DIVVLGRLADPYGIQGWLWLYPFGDDPLAWAEMPVWWIAREGEPWRECRLKSLKAHGNGV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ L GV DR AA + + LP E+ ++YW DL+G V+ T +GKVV + Sbjct: 65 VVLLDGVADRTAAESMKGVLVGAPREALPTTEKNEFYWTDLIGLDVINTADERIGKVVGL 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +ETG+N VL + + K ERL+PF+ V+ V+ I V+W Sbjct: 125 IETGANSVLRVMGDDK-----VERLLPFVSA-VVLAVEKEAGQIRVEW 166 >UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RNG5_9PROT Length = 190 Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG----QWQQVQLESWKHHNQD 69 IVLGK+ + YG++G LRV +D W++ G WQQ +L + HN Sbjct: 24 IVLGKIVAPYGVQGALRVCPFADDPSGWSRLTHWWLASEGDAPEAWQQTRLLKCRLHNDM 83 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I +L GV DR AA + V + LP G+YYW DL+G V+ + G LG+++ Sbjct: 84 LIAELAGVVDRTAAEASCGKLVGVPRAALPPTAAGEYYWADLVGLAVINSRGESLGRIIG 143 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +++T +N V+ + + ERL+PF+ V+ VDL R + VDW+ Sbjct: 144 LLDTPANAVMRVGDGQQG-----ERLLPFV-AAVVLAVDLPGRFVRVDWE 187 >UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfuromonadales RepID=RIMM_GEOLS Length = 176 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 6/164 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMII 72 I +G++ ++GIRG LR+ S + + ES+ + I+ AG +Q+QL+ +H+ ++ Sbjct: 9 IAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTRQIQLKKAAYHSGKFLL 68 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 L+G D + A L E+++ QLP + +YYW DL+G VVT EG LG + D++E Sbjct: 69 TLEGFDTIEKAQELAGAELLLQREQLPPPDADEYYWHDLLGLSVVTNEGQALGIIKDILE 128 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 TG+NDV ++ +D +E L+P + VI V++ T ++ + Sbjct: 129 TGANDVYLV----RDDATKREYLIPAI-ASVISSVNIHTGTMTI 167 >UniRef50_A5CVM9 16S rRNA processing protein RimM n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CVM9_VESOH Length = 136 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 8/143 (5%) Query: 40 SIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP 99 +I YQPW+I WQ + + + + ++ ++K + D++ A + + + + SQL Sbjct: 2 NILSYQPWYINVDSHWQTLNISQGRVQAKTIVAQIKDIFDKEQARVYIDINLYIKKSQLL 61 Query: 100 QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFL 159 +L+EG+YYW DL+G +VV + LGKV ++++TGSN+VLV++ G KE VP++ Sbjct: 62 RLKEGEYYWNDLIGLEVVNKAQFVLGKVFNLVDTGSNNVLVVR-------GGKEHWVPYI 114 Query: 160 DGQVIKKVDLTTRSIEVDWDPGF 182 +I +VD+ + I VDWD F Sbjct: 115 SPFLI-QVDINNQIILVDWDENF 136 >UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francisella RepID=RIMM_FRATN Length = 169 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--KAGQWQQVQLESWKHHNQD 69 D + + K+G++Y + G L ++ E++ Y W+IQ WQQ++ ES Sbjct: 4 DFVEIAKIGATYKLDGELNLYPLANSIETLISYGDWYIQLPATNVWQQLKGESVLKRADK 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + IKL ++D D A N I V LPQL E + Y+KDL+GC V G VVD Sbjct: 64 VYIKLANINDADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVD 123 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+N+VLV K + E L+P++ ++ + DL ++ I VDW+ + Sbjct: 124 IIETGANEVLVCKEDN------SEYLIPYVKQYIVSE-DLNSKKIVVDWEYDY 169 >UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkholderiales RepID=RIMM_RALEH Length = 222 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 14/181 (7%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI---QKAG---------QWQQ 57 P D + +G +G++YGIRGW++V +DA ++ + W++ +AG Q Sbjct: 40 PEDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVC 99 Query: 58 VQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 V++ + H+ ++ + GV DR+ A L + + + P EE ++YW DL+GC V Sbjct: 100 VKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPEEDEFYWVDLIGCTVS 159 Query: 118 TTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G LG+V +++ G++ +L + L D ERL+PF+D ++ VD + I VD Sbjct: 160 NEQGELLGEVSGLIDNGAHQILQVACVLPDGKA-GERLIPFVDA-FLRSVDTAGKRIVVD 217 Query: 178 W 178 W Sbjct: 218 W 218 >UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMM_MAGSM Length = 177 Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW--FIQKAGQWQQVQLESWKHHNQDMI 71 + LG + ++G++G +RV S TE + IFD+ W F K Q+++L S + H + ++ Sbjct: 10 VTLGYVMGAFGLKGEMRVRSLTERPDGIFDHPVWWLFNPKQKTRQEMRLGSGRLHGKGVV 69 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDY---YWKDLMGCQVVTTEGYDLGKVV 128 L GV R+A L EI V S LP + W DL+GCQVV +G +LG+VV Sbjct: 70 ATLAGVTTREAVQALFGTEIQVPRSMLPDGGDDPGVDGIWADLIGCQVVEVDGTELGRVV 129 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +MM TG+NDVL+++ + E+L+P+++ +V+ ++DL + I+V G Sbjct: 130 EMMATGANDVLIVRGGPEG-----EKLLPYIE-EVVVELDLDRQIIKVKLMEGM 177 >UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KXD1_9GAMM Length = 183 Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 12/179 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESI-----FDYQPWFIQKAGQW--QQVQLESW 63 +D + + + YGI+GW+++ ED +++ + P + GQ + V ++S Sbjct: 2 LDRLTVASIAGVYGIKGWVKLRLFVEDPDTLAQLEQLEISPPAKEPGGQGTSRPVVIDSV 61 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + + + + G+DDRD+A L EI V LP +G+YYW L G V EG Sbjct: 62 RKQGRGTVAHIVGIDDRDSAEALRRYEITVPREGLPDPADGEYYWHQLQGLAVWCREGSG 121 Query: 124 ----LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G+V ++ETG+NDVLV+ A + ERL+P L +V+K+VDL R I VDW Sbjct: 122 DAVCVGRVAYLLETGANDVLVV-APTAGSIDDSERLIPLLFDEVVKEVDLERREIWVDW 179 >UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacter RepID=RIMM_GEOSF Length = 174 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 85/144 (59%), Gaps = 6/144 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMIIK 73 ++GK+ +++G+RG LR+ S + D +S + I+K G + + + K H + +I+ Sbjct: 9 LIGKVSATHGVRGQLRITSFSGDMDSFMALRSVMIKKPGGGMETLAVAEAKAHGKKIILS 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 LKG D + L EI V QLP L +G+YYW DL+G QV+T +G LG++VD++ T Sbjct: 69 LKGYTDINDVLHLVGREIYVLRDQLPLLSDGEYYWCDLLGLQVMTEDGDILGELVDIIST 128 Query: 134 GSNDVLVIKANLKDAFGIKERLVP 157 GSNDV V+ G KE L+P Sbjct: 129 GSNDVYVVHGG-----GDKEILIP 147 >UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFS4_9PROT Length = 170 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMII 72 IV+G + YG+ GW+++ TE + + +Y W++ + +W +V + + + +++ Sbjct: 2 IVMGHIIGPYGVHGWIKINPYTEHLDGLMEYPQWWLGDEKAEWNKVHVVNGHIYGTTLLV 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD---YYWKDLMGCQVVTTEGYDLGKVVD 129 KLK DR A L +I + LP L E YYW DL+ +V+ +G LG VV Sbjct: 62 KLKEYSDRTQATKLKGIQIAIPRDWLPDLPENGVDGYYWTDLINAKVLNLKGEKLGTVVG 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + ETG+NDVL I ++ KE L+P + Q + KVDL I VDWD Sbjct: 122 LFETGANDVLRIVKMDQEK---KEILIPCIS-QYVMKVDLKNAQIIVDWD 167 >UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XB69_OXAFO Length = 180 Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 3/172 (1%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 + P D I +G + +YGIRGW ++ + +AE++ + W++ V++ + Sbjct: 9 EVPSDLIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLDLPDM-HNVKVMQARRQG 67 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++ G+D+R+AA L I + S+ P+L E +YYW DL+G V G LG V Sbjct: 68 DEIVAHFSGIDNREAAEALRGSVICISRSRFPELPEDEYYWVDLIGLSVFNLRGDALGTV 127 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +++ G++ VL + + ++E L+PF+D Q I VD I VDW+ Sbjct: 128 RGLIDNGAHPVLQVAVEDSEN-KVRELLIPFVD-QFIDDVDREGGKITVDWE 177 >UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GU91_9BURK Length = 188 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 98/187 (52%), Gaps = 24/187 (12%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----------QKAGQ---- 54 P D + LG++G YG++GW+ V S+E+ + + + W++ ++A Q Sbjct: 4 PDDLVELGRIGEPYGLKGWINVLPSSEEPDVLLKSKQWWVSRLPSSEGAVVRRAAQPKFE 63 Query: 55 ---WQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDL 111 ++ ++ K H+ ++ L+G++ + A + V ++ P EG+YYW DL Sbjct: 64 DLVFEPFRVLQSKPHSSRIVAHLEGIEQPELAAQFKGRRVYVSRARFPAPAEGEYYWVDL 123 Query: 112 MGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 +GC+V EG LG V +++ G++ +L +K++ + +E L+PF+ V+ VD Sbjct: 124 VGCRVTNLEGRVLGTVTQVVDHGAHPILSVKSDAE-----QEMLIPFVAAYVV-NVDTQA 177 Query: 172 RSIEVDW 178 + I+ DW Sbjct: 178 KQIQADW 184 >UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrhizobiaceae RepID=RIMM_RHOP5 Length = 176 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I + ++G+ +G+RG L+++ TED ++ DY P Q + + ++E+ + ++ Sbjct: 6 ICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGSR--RFEVETAREAKDHLVAT 63 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 LKGV RD A L E+ +D QLP+ +EG+YY DL+G VT G LGKV + Sbjct: 64 LKGVASRDDAVRLNGIELYIDRDQLPETDEGEYYHADLIGLAAVTAAGEPLGKVAAIHNF 123 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 G+ D++ I L+PF + V+ VDL Sbjct: 124 GAGDIIEIAPPSGPTL-----LLPFTN-AVVPTVDL 153 >UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera sp. MZ1T RepID=C4KAF6_THASP Length = 172 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----QKAGQWQQVQLESWKHHNQ 68 IVLG++ + +G++GW+++ +D S + W++ A W+Q L + + H + Sbjct: 2 IVLGRIVAPFGVQGWIKIHPFGDDPASWRNMSHWWLCSDDDAPAEAWKQYTLSACRPHGK 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ L + DR AA + I LP+ EG+YYW DL+G V G +G V Sbjct: 62 GLVAALAEISDRGAAEAIDGFYIAAPREALPKPAEGEYYWGDLVGLAVENEAGEAMGTVA 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ TG++DVL + + ERL+PF+ V+ VDL TR I V W Sbjct: 122 GLISTGAHDVL--QVREGEGEEGVERLIPFVAAYVL-DVDLATRRIRVAW 168 >UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermotogaceae RepID=RIMM_THEP1 Length = 176 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQD 69 + + +GK+ +++G++G ++ F T E + + + + + + + +ES + N+ Sbjct: 11 ERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNSEKKAFYNLTVESVRRMNKL 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+ K +D +AA + CE+ + +LP+L E +YY+ +++ C V G ++GKVVD Sbjct: 71 FLIRFKSIDTIEAAERIKGCEVFIKYEELPKLSEDEYYFYEILDCDVFYESGENVGKVVD 130 Query: 130 MMETGSNDVLVIKANLKDAF 149 ++ETGSNDVLV++ K+ Sbjct: 131 IIETGSNDVLVVRKKKKETL 150 >UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phyllobacteriaceae RepID=RIMM_MESSB Length = 212 Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 10/178 (5%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M+K +P+ L +G+++GI+G +RV + TED ++ Y P + + +Q+ Sbjct: 5 MAKPKAPAGIENPVQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMV---DGRVLQV 61 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTT 119 + + + +I++ KGVD R+AA L + VD S LP+ LEE ++Y+ DL+G V+ Sbjct: 62 AAIRPAKEVVIVRFKGVDGRNAAEALNGEALFVDRSALPEKLEEEEFYYADLIGMAVLDE 121 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G +LG+VV + G+ D+L + N ++PF + +DL+ +I +D Sbjct: 122 KGENLGRVVAVHNFGAGDLLEFRENSGPTV-----IIPFTR-DAVPDIDLSNNTIRID 173 >UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostridia RepID=RIMM_THEP3 Length = 167 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 8/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +GK+ S++GI+G ++V+ T E +D + W + + +E K ++ + +KL Sbjct: 7 VGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKGVCVKL 66 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 KG+D R A L + VDS +LEE +Y+ KDL+G +V T EG LG +V++++TG Sbjct: 67 KGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLVEVLKTG 126 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +NDV VIK +E L+P + +V+KKVD+ + + V G Sbjct: 127 ANDVYVIKTEE------REILIPAIK-EVVKKVDVDNKVMVVHLLEGL 167 >UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7M6_9GAMM Length = 180 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 99/175 (56%), Gaps = 9/175 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-----VQLESWKHH 66 + +VL ++ ++GI+GWL++ ED + + + + +Q V++ + + Sbjct: 3 ESLVLAEVLGAHGIKGWLKIRPLVEDPTFLEGLEGLVLASGPKMRQADSRGVKVTNLRPQ 62 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV--VTTEGYD- 123 + +I++ GVDDR A L + ++ LP LE+GD+YW+DL G +V EG Sbjct: 63 GRGWVIQVSGVDDRTQAEALRGMVLRGSAALLPDLEDGDFYWRDLEGLRVWCEAPEGLCL 122 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG++ ++ETG+NDVLV++ + + KERL+P+L +V+ VD+ ++ V W Sbjct: 123 LGEIDHLLETGANDVLVVRP-CEGSMDDKERLIPWLVDEVVHSVDMDAGTVRVIW 176 >UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostridium RepID=RIMM_CLOPS Length = 165 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 89/148 (60%), Gaps = 11/148 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +V+G++ +++G+RG ++V TED FDY + I K Q++++E K+ +I Sbjct: 3 DLLVVGQIINTHGLRGEMKVMPLTEDMRR-FDYLEYVILKG---QKIKVEGVKYFKDKVI 58 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +KL+G++ + A L + ++ +LEE +Y+ DL+GC VV TEG++ GK+ D++ Sbjct: 59 LKLQGINSIEEAEKLKRTYLEIEREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDVI 118 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFL 159 +T SNDV ++ G KE LVP L Sbjct: 119 QTPSNDVYWVQ-------GKKEVLVPVL 139 >UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthobacteraceae RepID=RIMM_XANP2 Length = 185 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I++ ++G+ +G+RG +R+F TED ++ DY P + A ++ ++ + + + Sbjct: 3 DRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDP--LTDATGKKRFRIAALRAAKDHFV 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVDM 130 +++G+ DR AA LTN ++ V LP ++ D +Y DL+G VV G +GKVV + Sbjct: 61 ARIEGIADRTAAEALTNLDLFVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVAL 120 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 + G+ D+L L A K +VPF + VD+ R + V Sbjct: 121 QDFGAGDILEYAPTLP-ATKAKTLMVPF-SKDAVPVVDVPGRRVVV 164 >UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteria RepID=RIMM_CLOPH Length = 169 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 95/171 (55%), Gaps = 6/171 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D + +G + S++GI+G ++VF +T+D + + + +++++E+ K Q +I Sbjct: 3 DLLRVGVISSTHGIKGEVKVFPTTDDMNRFKKLKMVTLDTGKEQKELEIENVKFFKQFVI 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K KG+D+ + ++++ L EG+++ DL+G Q +G LG++ +++ Sbjct: 63 LKFKGIDNINDIEKYKGKDLLISRENAVDLAEGEFFIFDLIGLQAEEEDGNSLGELTEVL 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +TG+NDV VIK KE L+P++D +KK+DL + + V PG Sbjct: 123 QTGANDVFVIKTKQG-----KEILIPYID-DCVKKIDLNEKKLVVHLIPGL 167 >UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHL9_9FIRM Length = 169 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 5/169 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +GK+ +++G++G ++V +++ E I + F++K G + H + +I+ Sbjct: 5 VAIGKVVTTHGVKGGMKVQPLSDNPERIKELIRVFVEKDGHSAARDVVEAFVHGRAWVIR 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+G+D DAA L + + S+ L E YY ++G V T +G LG +++++ET Sbjct: 65 LEGIDSCDAARELVGAMLTIPISERLPLPENSYYLDQIIGLDVYTVDGTYLGSIINVLET 124 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V++ N D ++ L+P L V+K +DL T +EVD G Sbjct: 125 GSNDVYVVE-NKADG---RQVLIPALKA-VVKSIDLDTGRMEVDPPEGL 168 >UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0C6_ERYRH Length = 181 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHHNQD 69 ++ I++G + +GI+G L+V T+ E F Q + G+ +ES++ H+ Sbjct: 17 MEHIIIGIIQKPFGIKGELKVAPKTDFVEDRFAPGQRVHFKLGGKTTDYVIESYRRHHGS 76 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++IK +G++ + EI +D +L E YY+ DL GC V +EG +LG V + Sbjct: 77 ILIKFEGLNSLNDVEFFHKGEISIDRESQHELPEDQYYFIDLEGCTVF-SEGVELGVVSE 135 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +MET ++ VL IKA +D LVPF++ + I+ VD ++ I+++W G Sbjct: 136 IMETPAHPVLRIKAEERDI------LVPFVE-RFIQDVDTKSKRIDINWMEG 180 >UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacter RepID=RIMM_GEOMG Length = 173 Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 8/159 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQDM 70 D ++LGK+ +++GIRG L V + + +I Q ++ + + +++ H + Sbjct: 6 DLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRV 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ LKG + + L E+ Q P L+EG++YW DL+G V T+EG LG++ ++ Sbjct: 66 LLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEI 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 + TGSNDV V++ G +E L+P L+ ++ VDL Sbjct: 126 IATGSNDVYVVRD------GEREYLIPALE-DIVVGVDL 157 >UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD25_9FIRM Length = 179 Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 99/182 (54%), Gaps = 7/182 (3%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQL 60 +KQ ++P+ +++GK+ +++GIRG L+V T+ E F Q + Q+V + Sbjct: 3 TKQRKGESPMKKMIIGKIVNTFGIRGELKVVPDTDFVEERFAPGQTLTVCLPEGDQEVTI 62 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + K H +++ L+GV + + CE+ VD LP L EG+YY+ L G + + + Sbjct: 63 AAVKEHKGLLLVLLEGVTNINQVERYKGCELAVDQEALPPLAEGEYYFFQLKGLKAIDPQ 122 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G +LG VV M + + +++ LK G K+ L+P++D +K+VDL ++I +D Sbjct: 123 GNELGTVVRMEASAAQNLI----RLKKPDG-KQALIPYID-VFVKQVDLQAKTITLDLIE 176 Query: 181 GF 182 G Sbjct: 177 GL 178 >UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinomycetales RepID=RIMM_MYCA1 Length = 175 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK---AGQWQQVQLESWKHHNQDM 70 + +G++ ++GI G + V T+D + F K G + +ES + H + Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVD 129 +++L GV DRDAA+ L VVDS++LP ++E D YY L G QV TT G +G V + Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGAVAE 122 Query: 130 MMETGSNDVLVIKANLKDAFGI-KERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T + ++L ++ DA G +E LVPF+ ++ V L IE+D G Sbjct: 123 VLHTAAGELLAVR---DDADGAPREVLVPFVSA-IVTAVSLDDGLIEIDPPDGL 172 >UniRef50_Q057I4 Ribosome maturation factor rimM n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=RIMM_BUCCC Length = 169 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-QWQQVQLESWKHHNQDMII 72 I +GK+G YGI GW +FS TE +IF+Y PW ++K+ + + +K H +I Sbjct: 2 ITIGKIGKPYGILGWFHMFSYTEKKNNIFNYFPWKLEKSNILLYKNNIIHYKTHTDHFLI 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K+K +++R I++ + QLP+L+ +YYW D+ C + + +G + ++++ Sbjct: 62 KIKDINNRTQTLNFIKQNILIKNFQLPKLKNKEYYWNDIFSCYIFDLKKKKIGSIKNIID 121 Query: 133 T 133 Sbjct: 122 N 122 >UniRef50_UPI0001698198 16S rRNA-processing protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698198 Length = 99 Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 61/92 (66%), Gaps = 7/92 (7%) Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I K++G DDRD A L + +I + +QLP LE G+YYW DL G +V T +G +LG+V Sbjct: 15 VIAKIQGCDDRDQAAALQDSKIAIRRAQLPALEAGEYYWTDLEGLRVETLDGVELGRVSY 74 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDG 161 + ETG+NDV+V+K G +ER++P+ G Sbjct: 75 LFETGANDVVVVK-------GERERMIPYTLG 99 >UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=RIMM_KOSOT Length = 200 Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 3/154 (1%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQDMI 71 I +GK+ +G+RG +++ S T + + + +KAG + ++++ + + I Sbjct: 13 IPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGKGYI 72 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + KG +AA + + + LP L+EG+YY+ L+ C+V EG +GKV D++ Sbjct: 73 VHFKGFKSVEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVTDII 132 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 ETG+NDV+V+ L D F ++E L+P + +++ Sbjct: 133 ETGANDVIVVTKELPD-FTVEEELIPVIKDYIVE 165 >UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetella RepID=RIMM_BORPD Length = 206 Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 26/203 (12%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--------- 51 M A P D + LG++ +YG++GW++V + A+ + W++ + Sbjct: 1 MPDAAHAAVPGDLVELGRINGAYGVKGWVKVQPHSAQADVLRKASSWWLTRLVPEKARGV 60 Query: 52 -AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKD 110 A Q+ ++ + ++ +L G+ DRD A L + V SQ P + +YYW D Sbjct: 61 VASAPQEYKVVQARPQGASVVAQLAGITDRDQAEALRGLAVQVSRSQFPAAADDEYYWVD 120 Query: 111 LMGCQVVTT---EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIK------------ERL 155 L+GC T E +G V ++ + G++ +L + A G + E L Sbjct: 121 LIGCAFYTNAEGEPARVGVVEEVFDNGAHAILRVVLQRAPAPGGEPEPRRDAKGRPLEML 180 Query: 156 VPFLDGQVIKKVDLTTRSIEVDW 178 VPF+ ++ VDL+ R I+ +W Sbjct: 181 VPFVGAHIL-AVDLSARRIDSNW 202 >UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMM_SYNWW Length = 172 Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 6/169 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +GK+ +YG GWL+V T+ E + + + G+ ++ K HN + K Sbjct: 7 VAIGKIAGTYGYAGWLKVIPLTDFPERFYKLDKVILNQGGKLGTFLVDGLKAHNNFYLFK 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 G+D + A N + +D S+L L EG +Y L G V E LG++ D++ET Sbjct: 67 FSGIDTVEVAQGFQNGILQIDESELYPLPEGYFYHFQLQGLSVYDEEKGLLGELTDIIET 126 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ D+ E L+P + VI V L + +E+ PG Sbjct: 127 GANDVYVV-----DSPQYGEILIPAIK-DVILAVKLEEKRMEIKLLPGL 169 >UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U5V9_9DELT Length = 199 Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQ-LESWKHHNQDMI 71 I++G + +GIRG + S D+ S+F ++Q G+ + SW+ H ++ Sbjct: 7 ILVGGVVRPHGIRGEI-CIKSHADSPSLFGLVAALYLQDKGKPPIPHAVRSWREHKGMVL 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L GVDDRD A L E++V + LP+L+EG++Y LMGC+V +G D+G + Sbjct: 66 LTLDGVDDRDKAEALRGREVLVREADLPELDEGEHYLYQLMGCRVTLADGTDVGVLEHFF 125 Query: 132 ETGSNDVLVI 141 ETG D VI Sbjct: 126 ETGEQDTWVI 135 >UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinomycetales RepID=D1AB16_THECD Length = 172 Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +V+G++G +G+RG + V T+D ++ F + +E + H ++ Sbjct: 4 DQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGRLL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ GVDDR AA L +VVD+ LP LE+ D ++ +L+G VTT+G +G V D+ Sbjct: 64 LRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTVRDI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + D+LVI+ ++ G E LVPF+ ++ +VD+ I +D PG Sbjct: 124 LHY-AQDLLVIR---RETGG--EALVPFV-AALVPEVDVAGGRIVIDPPPGL 168 >UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphaproteobacteria RepID=RIMM_BRASO Length = 199 Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 10/158 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMII 72 I + ++G+++G+RG +R+++ TED ++ Y P + + ++ + K H ++ Sbjct: 6 ICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDH---LVA 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KG+ DR+AA L E+ V +LP+ ++ +YY DL+G TT G LG+V+ + Sbjct: 63 SFKGITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHN 122 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLT 170 G+ D++ I ++PF + V+ VDL Sbjct: 123 FGAGDIIEIAPPSGSTL-----MLPFTNA-VVPTVDLA 154 >UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKU2_DESAH Length = 172 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQV-QLESWKHHNQDMIIKL 74 LG + +G++G+L+V S E+ ++++G+ + + H + ++++ Sbjct: 8 LGVVTGVHGLKGFLKVRSFAGSLETFKSGLEMVVRRSGKADECYTILKASPHKKGILMQF 67 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYDLGKVVDMMET 133 GVD RDAA E++VD LP+ E+ Y+W+DL+G +V T G+ LG + +MET Sbjct: 68 SGVD-RDAAETFVGAELLVDRRLLPEPEDDAYFWEDLIGLKVTDRTLGF-LGTIDSIMET 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V+K N KE L+P L V+ VDL + VD G Sbjct: 126 GSNDVFVVK-NKDKGLKNKEFLIPGL-ASVVIGVDLERGEMTVDLPEGL 172 >UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQK3_9FIRM Length = 168 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 4/130 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G++ + +G+RG LRV TE + F+ G+ V+ S + H II Sbjct: 10 ITVGRIVAPHGVRGDLRVLPETERPAMFKKLKKLFL--GGRTYDVR--SSRPHKNVYIIH 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L GV+DR+ A L + + ++LP+L EG+YY+ L+G VV+ G +G + +++ET Sbjct: 66 LAGVEDRNGAEPLVGTPVEIPVAELPKLPEGEYYYFQLIGLTVVSDTGDTVGTLTEIIET 125 Query: 134 GSNDVLVIKA 143 G+N+V +K Sbjct: 126 GANNVYAVKT 135 >UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=RIMM_HERA2 Length = 174 Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 7/172 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +TA D +++G++ +++G+RG L++ + E I + F+ + + + Sbjct: 1 MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIG-RLHQ 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 H +++L VD RDAA + E + S L +Y+ DL+G QV T G D+ Sbjct: 60 HKGSLYLLRLNEVDTRDAAEAMQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDI 119 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G+ V+++ETG+NDVLV++ G + LVP + V++ +D+ +I V Sbjct: 120 GRAVEIIETGANDVLVVR-----KLGQADILVPMVR-TVVRSIDIAGGTITV 165 >UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia RepID=C4Z931_EUBR3 Length = 178 Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 73/131 (55%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D + +G + S++GIRG ++VF +T+DA + + + + +++ S K +I Sbjct: 13 DLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFKNQVI 72 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K KG+DD + + V LEE +Y+ DL+G V + EG +LG + D++ Sbjct: 73 LKFKGIDDINDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVIDDVL 132 Query: 132 ETGSNDVLVIK 142 +TG+NDV V+K Sbjct: 133 QTGANDVYVVK 143 >UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillonellaceae RepID=C9KKT7_9FIRM Length = 180 Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 10/171 (5%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 A D + +GK+G+++GI G +R+ T+ E D + + + + +ES K+H Sbjct: 12 NAAKDRVTIGKVGAAHGIHGEMRIIPLTDFTERFADMKEVMVGD----ELLHIESCKYHK 67 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 Q +++K + R+ A LT + VD S+ LEEG++Y D++G V G LG V Sbjct: 68 QFILLKFREYPVREDAMRLTGRLLTVDRSEAVPLEEGEFYTFDIIGLTVYDETGNTLGTV 127 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +++ TGSNDV +A D +E L+P L V+K +D+ + VD Sbjct: 128 ENVLRTGSNDVY--QARRPDG---RELLIPALKA-VVKVIDVAGGRMVVDL 172 >UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFN2_BREBN Length = 175 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 90/162 (55%), Gaps = 10/162 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIF---DYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G+RG +RV +T+ + F + F + ++++ S + H I+ Sbjct: 12 VGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLSEPLKLKIASRRPHKNFEIV 71 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 G + + E+ + + L +LEE ++Y L+GC VVT EG +LGK+VD+M+ Sbjct: 72 SFHGFEHINDIEKYKGGELKIPAEALMELEEDEFYIHQLVGCVVVTDEGEELGKIVDVMQ 131 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 G+NDV V+K E L+P++D + IK+VD+T + + Sbjct: 132 PGANDVWVVKGKR------GEILLPYID-ECIKEVDITNKRV 166 >UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FNP4_DESAA Length = 169 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 16/176 (9%) Query: 12 DPIVLGKMGSSYGIRG--WLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ---LESWKHH 66 D + +G++ +GIRG LR F+ D IF + K G + +Q LES + + Sbjct: 5 DFVEVGQVAGVHGIRGAVLLRSFADNPD---IFAKGGKLLLK-GPGENIQEYILESSRPY 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ +L+GV DR A L I+V LP+LE +YYW DL+G +V +G LG Sbjct: 61 KGKLLAELQGVSDRSGAEALKGRMILVHRDALPELEPDEYYWFDLIGMEVAAPDGSRLGV 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ++ETG+NDV VIK G KE L P L V+ +DL + VD G Sbjct: 121 LDAIIETGANDVYVIKD------GEKEILAPALP-WVVLSIDLEAGVMIVDLPEGL 169 >UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMM_MOOTA Length = 176 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 12/175 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ------KAGQWQQVQLESWKHHN 67 I +GK+ ++GIRG ++VF T+ E ++ + G+ V + S + Sbjct: 6 IGVGKIIGTHGIRGEVKVFPLTDFPERFRPGTRLILEQEGADGREGRTFPVTVISVRPGK 65 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 ++I+KL ++D D A + + V+ ++ L EG YY L+G +V TT G LG + Sbjct: 66 GNLILKLAEINDADQAGAVRGATLKVEPWEVEPLPEGHYYIYQLLGSRVYTTGGEFLGIL 125 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ TG+NDV V++ +DA E L+P L V+++VDL + I V+ PG Sbjct: 126 RDILATGANDVYVVRN--EDA---GEILIPALK-TVVRQVDLARKEIRVELPPGL 174 >UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NX77_9RHOB Length = 184 Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 4/149 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++ K+G+++GIRG +RV +D S DY + + ++E + +I K Sbjct: 9 VLMAKIGAAHGIRGEVRVKPYGDDPLSFADY--GILTTRDGKRSFEVERARVQKTVVITK 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 KG+ DR+ A L ++ +D QLP+ EE ++Y+ DL G V+ G LGK++ + + Sbjct: 67 FKGITDRNQAEELNGIDLFIDRDQLPEPEEDEFYYSDLTGLDVLDQTGETLGKIIAVQDF 126 Query: 134 GSNDVLVIKANLKDAFGIK--ERLVPFLD 160 G+ D+L ++ +F I + VP +D Sbjct: 127 GAGDLLEVRPKRGRSFYIPFTKDFVPEID 155 >UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAZ1_9FIRM Length = 172 Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 91/169 (53%), Gaps = 8/169 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +G + S++G++G ++V+ +TE++ D Q + + G +++ + S ++ + +I++ Sbjct: 7 VGVITSTHGLKGEVKVYPTTEESRRFDDLCGQKVYAGRDGSLEELTIVSVRYFKKQVILR 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 ++ D + L +++ Q LEEG+YY DL+G +VV +G +LG + D++ T Sbjct: 67 FAEKNNIDEVSSLRQARLLISREQALPLEEGEYYVADLLGLKVVADDGRELGILTDVLTT 126 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV VI G + ++P + Q + K DL I V PG Sbjct: 127 GANDVYVIGRQ-----GQSDLMIPAIR-QCVLKTDLEAGEILVHLLPGL 169 >UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostridia RepID=RIMM_CLOTH Length = 174 Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQK--AGQWQQVQLESWKHHNQDMII 72 +GK+ +++GI+G ++ T++ F+ W ++ K + + + + S KHH +I+ Sbjct: 7 VGKIVNTHGIKGEVKAIPLTDNPRR-FNKLKWAYVSKEISNEMPKFDIVSVKHHKNFVIL 65 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K G+DD +AA L +++D +L + ++ DL+G V TE LG + D++ Sbjct: 66 KFSGIDDMNAAEKLKEHFVIIDRKDAVKLPKDTFFICDLIGMNVFDTEEKKLGVLTDVLS 125 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TGSNDV V+K++ KE L+P L V+KKV + VD G Sbjct: 126 TGSNDVYVVKSD-----NNKEILIPALKS-VVKKVCFEDNKMVVDLPQGL 169 >UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucleobacter necessarius RepID=RIMM_POLSQ Length = 188 Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 17/178 (9%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----QKAGQWQ--------QVQL 60 I LG + + G++G ++V + D ++ + ++ + AG Q ++ Sbjct: 10 IELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTEEATLTQYKV 69 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 +S K H+ ++++ L GV DRD A L I++D P+ E YYW DL+GC+ + Sbjct: 70 KSAKMHSGNVVLTLDGVSDRDQALALKGARILLDRDAFPKAESDSYYWVDLIGCKAKNLQ 129 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG V+D+ E G++ V+ I + LVPF+ +V++ VDL + + +DW Sbjct: 130 DEILGDVIDVTENGAHGVIAIGDISTKTI---QYLVPFVK-EVVRNVDLPNKLLTLDW 183 >UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacillales RepID=RIMM_LISMH Length = 172 Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 97/170 (57%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIF---DYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G+ G +RV ++T+ E F + F + + + +++ + S + H ++ Sbjct: 7 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G + + + +QL LEE ++Y+ +++GC VVTT+G +LG++ +++ Sbjct: 67 MFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTDGEELGEITEILT 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+K + K KE+L+P++ V+K++++ + I ++ G Sbjct: 127 PGANDVWVVKGSDK-----KEKLIPYI-ADVVKEININDKKITIEVMEGL 170 >UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacillales RepID=RIMM_BACWK Length = 171 Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 8/153 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFI--QKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G++G +RV S T+ E + +I +K + V++ S + H ++ Sbjct: 7 VGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEKGTDYLTVKVTSHRQHKTFDLL 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 L+G ++ D L I V QL +L EG+YY+ +++GC VVT EG LG + +++ Sbjct: 67 TLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEILS 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 G+NDV VIK ++ L+P++D V++ Sbjct: 127 PGANDVWVIKRPKG-----QDLLIPYIDDVVLQ 154 >UniRef50_Q5SJH5 Ribosome maturation factor rimM n=2 Tax=Thermus thermophilus RepID=RIMM_THET8 Length = 162 Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 18/170 (10%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G+ G+ Y ++G LR + + +++ G W+ + E +++++ L Sbjct: 6 IGRFGAPYALKGGLRFRGEP----VVLHLERVYVEGHG-WRAI--EDLYRVGEELVVHLA 58 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 GV DR A L + + + LP LEEG YY+ L+G V EG +G+VVD+++ G+ Sbjct: 59 GVTDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLP-VYVEGRQVGEVVDILDAGA 117 Query: 136 NDVLVIKA---NLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DVL+I+ L+D ERLVP V + SI VD PG Sbjct: 118 QDVLIIRGVGERLRDR---AERLVPLQA----PYVRVEEGSIHVDPIPGL 160 >UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LE37_RHOVA Length = 193 Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 13/169 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D ++LG++G ++G+RG +++ + T E I Y P + A + + + + + Sbjct: 4 DKVLLGRIGGAHGLRGEVKIATFTAAPEDITAYGP--LSSADGTRTFVITGMRAASPGSV 61 Query: 72 I-KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVD 129 I +LKGV DR A L E+ V LP EE D +Y+ DL+G V+ EG +GKV+ Sbjct: 62 IARLKGVADRTQAEALNGIELYVPRDSLPPPEEDDEFYYSDLIGLAAVSPEGAAVGKVIG 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKER--LVPFLDGQVIKKVDLTTRSIEV 176 + G+ D++ ++ FG + + L+PF D + VDL + V Sbjct: 122 VHNFGAGDLIEVR------FGDERQPVLIPF-DNAHVPHVDLGAGRVTV 163 >UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Selenomonas RepID=C4V0K2_9FIRM Length = 169 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 91/172 (52%), Gaps = 24/172 (13%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQV----- 58 +L+ P + IV+G++G+ +G+RG LR+ T+ F ++ Q ++V Sbjct: 3 RLSQSVPDERIVIGRIGAPHGVRGDLRIIPLTD-----------FPERFAQMREVMAGDE 51 Query: 59 --QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 + + K +++++ + D R+ A LT + V ++ L+EG+YY D++G V Sbjct: 52 LLHITAVKPQGRNILMHFREYDVRETAQRLTGRVLTVPRAEAAPLDEGEYYVFDIVGLTV 111 Query: 117 VTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVD 168 +G +LG V D++ TGSNDV + +DA G E LVP L V++ +D Sbjct: 112 RDEDGNELGTVTDVLRTGSNDVYAV----RDAEG-HELLVPALR-TVVQNID 157 >UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidaminococcus RepID=D2RIH1_ACIFE Length = 164 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IV+GK+ + +G+RG R+ T+ E + + ++ V L + H ++K Sbjct: 5 IVIGKIVAPHGVRGEFRIMPQTDHPERYAKMKKITLDNGREYTVVSL---RQHKNVYLMK 61 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 ++G+D + A L IV+ +LP L EG +Y +D++G VT EG +G + D++ Sbjct: 62 VEGIDSMNDAETLRGRTIVLRPEELPPLPEGQFYVRDIIGFAAVTPEGETVGTLKDVLSP 121 Query: 134 GSNDVLVI 141 GS DV VI Sbjct: 122 GSTDVFVI 129 >UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMM_SYNFM Length = 176 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQ 59 MSK + P + +GK+ ++GIRG L++F E + + +F++ K G + + Sbjct: 1 MSKTVE---PACLVPVGKVTRTHGIRGALKIFPYGESLAAQAAGERFFLRSKNGGYCTLT 57 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + + ++ + + D + A EI + +LP + EG+YY L+G +VT Sbjct: 58 LIGLRAQGRMLVCGFEEIKDVNGAQPFVGEEIFLPEDRLPPVSEGEYYHYRLIGLDIVTL 117 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +G LG + ++ETG NDV V + +E L+P ++ VI+++DL + + VD Sbjct: 118 DGESLGVLRKIIETGGNDVYVAEREG------REILIPAIE-DVIREIDLERKRMVVDLP 170 Query: 180 PGF 182 G Sbjct: 171 EGL 173 >UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMM_SYNAS Length = 166 Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 8/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQDMIIKL 74 +G++ S+G++G ++ S E+ E + I K + + ++ H ++L Sbjct: 6 IGEIVKSHGLKGRMKAKSYVENGEDLSSVHEAMIVKGKEEPRGYKVRKIVLHKTYFFLEL 65 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 + +D ++A+ L +++ L +YYW+DLMG QVVT EG LG++ + TG Sbjct: 66 ETIDTVESADSLVGSTVLIPEDDRAALSGDEYYWRDLMGLQVVTEEGRFLGRIESIFPTG 125 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 SNDV V A G +E L+P + VI K+DL + + V PG Sbjct: 126 SNDVYVC------AGGSREILLPAIS-DVILKIDLDKKEMVVRLLPGL 166 >UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactobacillus RepID=RIMM_LACGA Length = 173 Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 8/163 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTE-DAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +GK+ S +G++G ++V ++T+ E + + FI+ + Q+Q++ ++ + H Q ++K Sbjct: 7 VGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQFYLVKF 66 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMET 133 + +D D A + E+ V + +L EG YY+KD++ C V E G LG + ++ Sbjct: 67 EEIDGIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEKLGVLANIETP 126 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G+ND+ IK +F I P ++ V+ KVDL + IEV Sbjct: 127 GANDIWEIKPEHGKSFWI-----PNIES-VVNKVDLANKRIEV 163 >UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5A1_DESAS Length = 173 Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G++ ++ G RG++RV T+ E + + G ++ + E +H + ++IK Sbjct: 10 ITIGEIVNTQGNRGYVRVLPLTDFPERFKGMKQVSVYTKGAYRLMHPEDVYNHKKFVVIK 69 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 K + D AA L + V+ + L G YY +LMG V +EG G++ D++ T Sbjct: 70 FKEIPDMTAAESLKGGLLQVEPKDIVPLPRGSYYVFNLMGMNVYNSEGRHYGRIKDILTT 129 Query: 134 GSNDVLVI--KANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV ++ +A +D L+P L QV+K +D+ + + VD G Sbjct: 130 GANDVYIVWYEAEKRDL------LIPALK-QVVKLIDVENKKMVVDLPEGL 173 >UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanobacteria RepID=RIMM_NOSP7 Length = 235 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 13/176 (7%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESI-FDYQPWFIQKAG-QWQQVQLESWKH-HNQDM-I 71 +GK+ S G+ G L+V+ ++ E + W + G + Q +QL + ++ N+++ + Sbjct: 59 IGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLHLDGTEPQPIQLLTGRYISNKNLYV 118 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV-VTTEGYDLGKVVDM 130 IKL GV++ D A L C+++V +S PQL E +Y+ DL+G +V + G +G VVD+ Sbjct: 119 IKLAGVENCDQAEALRGCKLMVPASDRPQLAEDEYHVLDLIGLEVFMQASGELVGTVVDI 178 Query: 131 METGSNDVLVIKANLKDAFGIKER----LVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G ND+L +K L +F ++ L+PF++ + VDL + IE+ PG Sbjct: 179 IPAG-NDLLEVK--LHPSFTTDKKQKTVLIPFVEA-IAPVVDLKSNRIEITPPPGL 230 >UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobiales RepID=RIMM_RHIE6 Length = 193 Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P+++ +G + G+RG +R + T D ++ DY ++ +++ K+ ++ Sbjct: 10 NPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDGRSFEILEIREMKNV---VV 66 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ +G++DR+AA L E+ ++ LP +LE+ ++Y+ DL G + +G G V Sbjct: 67 VRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARDDQGVSYGTVTG 126 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 + + G+ D+L +K G + L+PF + V+ ++DL ++ +D Sbjct: 127 VFDFGAGDLLELKGP-----GKRPVLIPFSEASVL-EIDLEAGTLLID 168 >UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halothermothrix orenii H 168 RepID=RIMM_HALOH Length = 170 Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 74/134 (55%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +GK+ + G +G +RV T+ E + F+ + + + ++E + H + +IIK Sbjct: 6 ITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFVIIK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G+DD AA + I + + L EG Y+ +L+G +V T EG LGKVVD++ T Sbjct: 66 FEGIDDIGAALAYKDYFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDIITT 125 Query: 134 GSNDVLVIKANLKD 147 G D++ +K + KD Sbjct: 126 GGTDIIKVKGDKKD 139 >UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobiales RepID=RIMM_AGRRK Length = 190 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 91/168 (54%), Gaps = 11/168 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P+++ +G++ G+RG +R + T D ++ DY ++ +++ K+ +I Sbjct: 6 NPVLMATIGAAQGLRGEVRARAFTSDPTALGDYGHLHSMDGRIFEVLEIREAKNV---VI 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ +GV++RDAA L E+ ++ LP +LE+ ++++ DL G + V +G G V Sbjct: 63 VRFRGVNNRDAAEALNGLELYIERDNLPDDELEDDEFFYTDLEGLEAVDDKGTAYGTVSG 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 + + G+ D+L +K G + L+PF + V+ ++DL I +D Sbjct: 123 VYDFGAGDLLELKGP-----GKRPVLIPFSEAAVL-EIDLEGGKILID 164 >UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QVP2_9RHOB Length = 186 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++ K+G+++G+RG +RV +D S DY K G+ Q ++ S + ++ K Sbjct: 9 VLMAKIGAAHGVRGEVRVKPFGDDPLSFTDYG-VLTTKDGK-QSFEVVSARVQKTVVVTK 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 K V DR+ A L E+ +D QLP+ +E ++Y+ DL G V +G LGK+V + + Sbjct: 67 FKEVTDRNRAEELNGTELYIDRDQLPETDEDEFYYSDLNGLDVKDPQGELLGKIVAVQDF 126 Query: 134 GSNDVLVIKANLKDAFGI 151 G+ D+ I+ F I Sbjct: 127 GAGDLFEIRPKRGKTFYI 144 >UniRef50_A8F3G2 Ribosome maturation factor rimM n=1 Tax=Thermotoga lettingae TMO RepID=RIMM_THELT Length = 168 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 9/157 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQD 69 D +V+GK+ ++G+ G ++V T E + FI+ Q ++Q+E + + Sbjct: 3 DYVVIGKITKTHGLFGSVKVLPLTNALEVFQKLENVFIKNDAQSNTHRLQIEEIRKAGKG 62 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVV 128 +IK G+DD + A + + V + LP+ + +YY+ +L+ +V+ G +G+V Sbjct: 63 FLIKFSGIDDEERARKIVGLSLAVRVTDLPKPKSPNEYYYYELLNVEVLDQSGNFIGRVE 122 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 D+++TGSN+V V+K G E L+P + +IK Sbjct: 123 DIIQTGSNEVAVVKN------GSFEMLIPVIHDYIIK 153 >UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZ72_ABIDE Length = 181 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 8/137 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--------KAGQWQQVQLESWKHHN 67 +G + S++G+ G ++VF +T+ + + FI K +V++E+ K+ Sbjct: 7 VGVLTSTHGLTGGIKVFPTTDCLDRFDSLKRAFIDLSSGKGTIKGNGMLEVEVENVKYFK 66 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 I+ KG+D+ D +++V L EG++Y D++GC+V+T G + G V Sbjct: 67 NTPIVTFKGIDNVDLVAKYKGMDLLVAREDALPLAEGEHYVSDVIGCKVITDTGKEYGVV 126 Query: 128 VDMMETGSNDVLVIKAN 144 +++ETG+N VLV+K N Sbjct: 127 SEVIETGANKVLVVKPN 143 >UniRef50_Q73PB6 Ribosome maturation factor rimM n=2 Tax=Treponema RepID=RIMM_TREDE Length = 179 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 10/174 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF--IQKAGQWQQ------VQLES 62 +D + G++ ++GI G+++V S + + E + F I K +Q ++E Sbjct: 1 MDLLATGRIRGTFGIEGFVKVESFSGEYEHFLGFDRVFLSILKEKLREQKYKDGWFEIEE 60 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 D ++K KG+D+ +AA LT E+ + + L+EG+ Y DL C +V EG Sbjct: 61 VNLRKADALVKFKGIDNPEAAKCLTGSELFIPRDKAAPLDEGEVYVHDLCNCNLV-CEGT 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 +GK+ + E G +L I +A VPF + + I K+DL +++E+ Sbjct: 120 LVGKITSVAEGGGGYLLEIAGKTSEAAAESSFYVPF-NKEFIGKIDLKAKTVEL 172 >UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4R6_CHLAD Length = 169 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHHNQDM 70 D + +G +G+ +G+RG +++ S + E + + + FI QV + H + Sbjct: 3 DLLYIGVLGAPFGVRGQIKLHSISSHPEHLIRHLRTVFIGPKRIPHQVT-RLFLHKPGLL 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 II+L+ V DRDAA+ L E+ + ++ L E ++++ DL+G VT G +G+V D+ Sbjct: 62 IIQLQSVTDRDAASDLRGAEVYIAAADAAPLGEDEFFYHDLIGLAAVTDTGDLIGEVRDV 121 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 +ETG+ ++ VI G + LVP + I +DL R + + Sbjct: 122 LETGAGEIAVIARR-----GRADALVPMVR-DFIVAIDLVERRLVI 161 >UniRef50_C9RLH6 16S rRNA processing protein RimM n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLH6_FIBSS Length = 185 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 4/169 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQDMII 72 I + ++ ++G++G+++ T D + +QK G+ ++ LE K N ++ Sbjct: 8 ITVCQLMRAHGVKGYIKAMPLTHDLTRCKSLKDVRVQKRNGEVLELTLEDAKQANNLWLL 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K KG D +A + L N ++++ S+ L EG+YY DL G +V T +G D+G+V+++ E Sbjct: 68 KFKGFDTPEALSPLVNGDVMIPESERLPLPEGEYYLDDLEGFRVHTEDGRDVGEVIEVQE 127 Query: 133 TGSNDVLVIKANL--KDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + D +IK +L + F K L P++D +K+++ + I D D Sbjct: 128 LMTVDAFLIKFDLAVQSEFSSKSILAPWID-DCVKEINDEEKFIVCDSD 175 >UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococcaceae RepID=RIMM_PELTS Length = 170 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +GK+ + G RG +RV T+ E + + G + HH +IIK Sbjct: 6 IRIGKILKTQGNRGAVRVLPLTDYPERFKNMSRVQVSLKGFRTFFTVGEVYHHKNFIIIK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 K ++ AA L + V +L L E +Y D++G +V T G +LG+V D+++T Sbjct: 66 FKEIESMAAAEKLKGAFLEVGRDELVPLPEDRFYIFDIIGLKVYDTGGRNLGRVTDVLQT 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ G K L+P L QV+K V+LT + V+ G Sbjct: 126 GANDVYVVDT------GGKPLLIPALK-QVVKSVNLTEGKMVVELPEGL 167 >UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QFI5_9RHIZ Length = 185 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 12/169 (7%) Query: 14 IVLGKMGSSYGIRG--WLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 I+LG++ +GIRG +R +++T DA I Y P + A + L+ + ++ ++ Sbjct: 10 ILLGEISGVHGIRGDILVRTYTATPDA--IASYGP--LTDATGTKTFSLKIVRVTDKGVV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ G+ DR A L ++ + +LP+ ++Y DL+G V + +GK+V + Sbjct: 66 ARIAGISDRTTAEALRGTKLFIAREKLPETSASEFYHSDLIGLNAVAEDNTPIGKIVSVQ 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G+ D+L L+ G E +PF D Q + KVDL+ R++ + P Sbjct: 126 NFGAGDLL----ELQPPEGASE-FIPFED-QWVPKVDLSARTVVIRRPP 168 >UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMM_PETMO Length = 185 Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 96/179 (53%), Gaps = 24/179 (13%) Query: 12 DPIVLGKMGSSYGIRGWLRV--FSSTEDA----ESIFDY----QPWFIQKAGQWQQVQLE 61 + I + K+ +S+G+ G +++ F++ +D E + Y + +F K Q + + Sbjct: 10 NKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPL--- 66 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 N+ ++ L+G+ D D A + E+ +D LP L +YYW +++ +V +G Sbjct: 67 -----NKFFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDG 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVI--KKVDLTTRSIEVDW 178 +GKV ++++TG+NDV+ IK NL+D KE L+P D +I KK D + +++W Sbjct: 122 EYVGKVEEIIQTGANDVISIK-NLEDD---KEVLIPMTDHYIIELKKEDKSIIVKKIEW 176 >UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillales RepID=RIMM_EXISA Length = 172 Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 96/170 (56%), Gaps = 9/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHHNQDMII 72 + +GK+ +++G++G +++ ++T+ E F F+ G Q++ + +++ H Q ++ Sbjct: 4 LYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQFHLV 63 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KG D+ + ++ V + + L+E ++Y+ +++GC+ V +G +G V D+ E Sbjct: 64 TFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAV-VDGEVIGVVDDIFE 122 Query: 133 T-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 T G+NDV VIK G + L+P+++ V++++D+ + + + PG Sbjct: 123 TNGANDVWVIKRP-----GKSDALIPYIE-SVVQEIDVDAKRVVITPIPG 166 >UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococcus xanthus DK 1622 RepID=RIMM_MYXXD Length = 188 Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 9/171 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESW 63 +TA +P + LG + ++G+RG + + + +E++ + W +AG ++++LE+ Sbjct: 1 MTATSPY--LELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEAL 58 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + ++ I+ L+GV+ R+ A L ++ V L EG+++ DL+G V G Sbjct: 59 RPTPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNA 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 LG+V ++ TG LVI+A+ G +E +VPF D + + VDL R I Sbjct: 119 LGRVEEIWTTGEVPNLVIRAS-----GREELVVPFAD-EFVPTVDLEARRI 163 >UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_PARL1 Length = 188 Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 13/172 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII- 72 + LG + ++G+RG +RV TE E + Y P + + L K +D++I Sbjct: 14 VCLGVVTGAHGVRGLVRVKPYTEMPEGVAAYGPVETKDGATSFAISL---KGMAKDLVIC 70 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQL---EEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 KL+GVDDRD A L E+ V +LP+ EEG +Y+ DL+G + V +G D G++ Sbjct: 71 KLEGVDDRDVAAALRGTELYVPRERLPRASGDEEG-WYYADLIGLRAVGLDGRDYGRIAG 129 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 + G+ D+L I A G + L+ F D + + +VD+ + +D G Sbjct: 130 VENFGAGDLLEIAP----AEGGQTVLMGFTD-ENVPEVDIAGGRVVIDPPAG 176 >UniRef50_A9WEK5 Ribosome maturation factor rimM n=2 Tax=Chloroflexus RepID=RIMM_CHLAA Length = 174 Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 7/149 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHHNQDM 70 D + +G +G+ +G+RG +R+ S + E + + + FI QV + H + Sbjct: 8 DLLYIGALGAPFGVRGQIRLHSISSHPEHLIRHLRTVFIGPKRVPHQVS-RLYMHKPGLL 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 II+L+ + DRDAA L E+ + ++ L ++++ D++G Q VT G D+G+V D+ Sbjct: 67 IIQLQTITDRDAAADLRGEEVYIAAADAAPLAADEFFYHDVIGMQAVTDSGEDIGEVRDI 126 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFL 159 +ETG+ +++VI G + LVP + Sbjct: 127 LETGAGEIVVITRR-----GRPDALVPMV 150 >UniRef50_C5SJF8 16S rRNA processing protein RimM n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SJF8_9CAUL Length = 180 Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 78/130 (60%), Gaps = 3/130 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + ++ +S+G+RG ++ S +D S+ +Y P + + G+ V + + + H +++K Sbjct: 5 VFVAQVAASFGVRGEFKLISHMDDPLSVLEYNPLYNPR-GEPALV-ITAARVHKGALVVK 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G+ D+D A+ L ++ V LP++E E D+Y DL+G +V +T+G +G++ + + Sbjct: 63 AEGISDKDKADALKGLKLYVRREDLPEVEDEDDFYITDLIGLEVRSTDGSVIGRLKGVED 122 Query: 133 TGSNDVLVIK 142 G+ D+L I+ Sbjct: 123 FGAGDLLDIQ 132 >UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosipho RepID=RIMM_THEM4 Length = 178 Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 7/156 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQD 69 D + + +G ++G+ G LR+F T E I + FI +K + ++ N Sbjct: 11 DKVPIAVLGKTHGLNGELRLFPLTNMPEVIESLEEVFIYNEKVKKLLIGRIIHMSLANGY 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I+K +G+D + A + ++ S+LP L +YY+ +++G +V +G LG + + Sbjct: 71 YIVKFRGIDTLNDAKKFVGSTLYIEKSRLPILSSDEYYFYEVIGMKVYDEKGIFLGNIDE 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 +++TGSNDV VI + KD E L+P + V++ Sbjct: 131 VIQTGSNDVFVINKDTKD-----EILIPVIKEYVLQ 161 >UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillonellaceae RepID=D1BLK6_VEIPT Length = 165 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 4/130 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G + + +G+RG LR+ T+ E +I ++ + S + H Q ++ Sbjct: 5 DFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYID----GKEYHVASARFHKQFVL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K + +R+ A L T I V L +L EG YY D++G +V T G LG V D++ Sbjct: 61 ASFKEIPNRNTAELFTKKAIQVRREDLVELPEGRYYIFDIIGLEVQDTMGNVLGTVTDVL 120 Query: 132 ETGSNDVLVI 141 + G+NDV V+ Sbjct: 121 QPGANDVYVV 130 >UniRef50_B7A7I3 16S rRNA processing protein RimM n=3 Tax=Thermaceae RepID=B7A7I3_THEAQ Length = 164 Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 18/170 (10%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G+ G+ Y + G L+ E + + + W+ V E +++++ L Sbjct: 8 IGRFGAPYALAGGLKF-----RGEPVVAHLTRIYVEGHGWRAV--EDLYQVGEELVVHLA 60 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 GV R+ A L + + + LP LEEG YY+ L+G V EG +G+V D+++ G+ Sbjct: 61 GVSTRELAEALVGLRVYAEVADLPPLEEGQYYYFALIGLP-VYVEGQKVGEVADILDAGA 119 Query: 136 NDVLVIKA---NLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DVLVI+ L+D ERLVP V + I V+ PG Sbjct: 120 QDVLVIRGVGERLRDR---AERLVPLQA----PYVRVEAEGIHVEPIPGL 162 >UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMM_NATTJ Length = 179 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQKAGQWQQV--QLESWKHH 66 +D + +GK+ ++G++G L+V S T D E+ F+ + + + + + + +ES H Sbjct: 5 LDLVYVGKIVGTHGVKGELKVISLT-DIENRFNELDRVYLVNEQDHYDPIIAHIESSFTH 63 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 I+K DD + + I + + PQLEE +YY+ + G VVT E LG Sbjct: 64 KNMEIVKFSEWDDINQVEGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEFLGT 123 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++ +TGSNDV + D K L+P L +V+KK+DL + + VD G Sbjct: 124 VTNIYQTGSNDVYEVSKEQDD----KPILIPAL-YEVVKKIDLDEQIMIVDLPEGL 174 >UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZV21_DESOH Length = 170 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMII 72 + +GK+ +GIRG +RV+S + D F++ G + +E K H + ++ Sbjct: 7 LCVGKIVGIHGIRGTVRVYSHSGDIAEFSQGNTLFLRGPKGDERVCTIEWCKPHGRHFLL 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +D R+ A + E+ + LP LE+ YYW DL+G V + LG++ ++ Sbjct: 67 GALELDSREQAAAVVGYELFALRASLPPLEDDTYYWDDLIGLAVFDKKTL-LGRITSIIP 125 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 T NDV V+ DA KE LVP L V+ +DL +++V Sbjct: 126 TPGNDVYVV----TDADTGKETLVPALK-SVVGHIDLAAGTMQV 164 >UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT38_9FIRM Length = 177 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQ---QVQLESWKHHNQDMI 71 + ++ +++GIRG L++ + T+ E F + +I K Q VQ+ H + Sbjct: 6 VARIVNTFGIRGQLKLIADTDFPEERFASGKTLYILKDLNSQPLASVQVAKAAIHKGTWL 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 I D+ + C + +D S+ +LEE YY L+G +VVT EG LGK+ +++ Sbjct: 66 ISFVDYDNINQVEGFKGCWLAIDESEQEELEEDSYYHHQLLGLEVVTLEGKTLGKIKEIL 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + GSNDV V++ N+ A K+ L+PF+ G V+K VDL ++V+ G Sbjct: 126 QLGSNDVFVVQRNIPKA---KDALIPFI-GDVVKTVDLEAGQVKVELMEGL 172 >UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbiobacterium thermophilum RepID=RIMM_SYMTH Length = 174 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 96/179 (53%), Gaps = 9/179 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + Q+ D I +G++ + +G+RG +RV+ +T+ E + I + + + Sbjct: 1 MAGQSRPDLIRIGQVTAPHGVRGAVRVYPTTDFPERFVTLKRVMIDGPDRAVGARFRGFV 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 + +I++L+G+ DR+ A L +++V ++ L EG YY D++G +VV +G L Sbjct: 61 KNL--VILELEGITDRNQAERLRGADLLVPREEVHPLPEGYYYDFDIIGIEVVDPDGRQL 118 Query: 125 GKVVDMMETGS-NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+VV++ T +D+ V++ A G K LVP + + +K++DL T + +D PG Sbjct: 119 GRVVEVDHTSPVHDLYVVET----APG-KRYLVPAVR-RFVKEIDLETGRMVIDPIPGL 171 >UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinomycetales RepID=RIMM_RHOE4 Length = 190 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 86/150 (57%), Gaps = 7/150 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ---LESWKHHNQDM 70 +V+G++ S+GI+G L V T++ E F + + ++ +E+ + H+ + Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQL-PQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L+GV DR A+ L V+DSS+L P + ++Y +L G +VV T+G ++G V++ Sbjct: 63 LLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGSVIE 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFL 159 ++ + + ++L I+ + + E L+PF+ Sbjct: 123 VLHSAAGELLSIRRTGETS---GELLIPFV 149 >UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadecabacter antarcticus RepID=B5J1W5_9RHOB Length = 183 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 9/172 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D IV+G + S+G+ G +R+ S D E++ +Y P Q + ++ + +I Sbjct: 6 DRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIMTIVIKGQTKGS--LI 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ G+ ++ A+ L ++ QLP L + ++Y DL+G T G LG+V + Sbjct: 64 ARVDGITTKEEADGLRGMDLYAQRDQLPSLPDDEFYHTDLVGLMTYDTGGAKLGRVKAVQ 123 Query: 132 ETGSNDVL-VIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G++D+L +I + KD LVPF V VDL + I VD G Sbjct: 124 TNGADDLLEIISPSDKDTV-----LVPFTKANV-PTVDLASGRIVVDPPRGL 169 >UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepID=C8UUQ0_LACRG Length = 198 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G + +++GIRG +RV +T+ E F + + S + H ++ K Sbjct: 33 IGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQHKGLTMLTFK 92 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 D + ++ V + L LEEG YY+KD++G V+ G LGKV +++ G Sbjct: 93 DYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVIDEHGQTLGKVSEILSPGP 152 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 NDV VI G E L+PFL V++ +DL + V Sbjct: 153 NDVWVIPRP-----GKSELLLPFLK-SVVQTIDLEQKEAHV 187 >UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P6R8_9FIRM Length = 185 Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 8/151 (5%) Query: 17 GKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKG 76 GK+ +++G+RG +RV + + + ++ G +V +E + H +I+K +G Sbjct: 24 GKIVTTHGVRGEVRVQPWCDTPGFLTQFACLYLDARGSQARV-VERARVHKNIVIVKFEG 82 Query: 77 VDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETGS 135 V++ + A L + +D + + +LEEG+ + +DL+GC V + G D G+V D+ TG+ Sbjct: 83 VENVEDAAGLRGKTVYIDRADV-ELEEGECFVQDLIGCTVRDADTGADYGQVYDVRATGA 141 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKK 166 NDV L+DA G +ERLVP + V+ K Sbjct: 142 NDVYY----LRDAAG-RERLVPAIADVVLAK 167 >UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli RepID=RIMM_LACSS Length = 176 Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 9/157 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWKHHNQDMIIKL 74 +GK+ +++GIRG +RV ++T+ E F ++ V + + + H Q +++ Sbjct: 8 VGKIVNTHGIRGEVRVIATTDFTEERFKKGTHLAVEMPNGLTPVTVSAMRQHKQFYLLQF 67 Query: 75 KGVDDRDAANLLTNCEIVVDSSQL-PQLEEGDYYWKDLMGCQVV-TTEGYDLGKVVDMME 132 +G+ + + L + + +S+ QLE+ +YY+ D++G +V+ ++G GKV ++++ Sbjct: 68 EGLGNINDVELFKGHNLKIAASERDDQLEDDEYYYGDIIGLEVIEESDGTSYGKVSEIID 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 G NDV VIK G + L+PFL VIKK+D+ Sbjct: 128 PGPNDVWVIKRR-----GRSDLLLPFLK-SVIKKIDI 158 >UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F050_9PROT Length = 182 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMIIKL 74 +G + ++G++G L VFS T A++I Y W+I K A + + H + M+ +L Sbjct: 9 IGDILGAHGLKGALIVFSHTRPAQAIAGYSCWWIGKTAATAKAYPVRRCWQHGKRMLAEL 68 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-LGKVVDMMET 133 +GV D D A L ++ V + + ++ +Y W++L+GC+V+ + LG V + E Sbjct: 69 EGVSDCDQAALFKKLKVWV-PIDVVETDDDEYLWEELIGCRVIKEGTLEPLGTVTALEEY 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ D L+++ DA E L+PF++ V+ V+L I VD G Sbjct: 128 GAQDNLLVQTP-DDAAEPGEWLIPFIE-DVVTDVNLDDCVITVDLPEGM 174 >UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostridium RepID=RIMM_CLOD6 Length = 171 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 85/147 (57%), Gaps = 3/147 (2%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ ++ G++G +RV+ T+D E + + +++ K ++ +E ++ +I+K+K Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLN-NKLAVEKVRYKGSMVIMKIK 68 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A L N + V +LEEG+++ D++G +V+T +G +G + D+++ + Sbjct: 69 GIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYSA 128 Query: 136 NDVLVIKANLKDAFGIK--ERLVPFLD 160 NDV V+K F I ++ VP +D Sbjct: 129 NDVYVVKGEEDKEFMIPAIKKFVPTID 155 >UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=RIMM_RHORT Length = 201 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 8/147 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++G + S+G+RG +RV S T+D ++ DY P + ++ +E +I + Sbjct: 5 LLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETG--TRRFAVEVRNQAKGVVICQ 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQ--LEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + GV DR AA+ L + +D + LP LEE +YY DL+G V +G LG V + Sbjct: 63 IPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHSVH 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPF 158 + G+ D+L + A G + L+PF Sbjct: 123 DFGAGDMLEVTL----AQGRRSVLLPF 145 >UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonifex degensii KC4 RepID=C9R885_AMMDK Length = 169 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G++ + +G RG L+V T+ E + + G+ ++ + H + ++ Sbjct: 4 DFITVGEIVAPHGYRGALKVLPLTDFPERFLGMKEAMVLLKGRRTTYTVKRARLHGKFVL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++L GV+ + A L + V ++ L G YY DL+G +V T EG LGK+ ++ Sbjct: 64 LELVGVERMEEAEALRGGLVQVPREEVYPLPPGHYYIFDLIGMEVFTEEGAFLGKIEAVL 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T +NDV +++ KE L+P L V+ VD+ R + V G Sbjct: 124 STRANDVFSVRSPEG-----KEILIPALK-TVVCSVDVPGRKMTVKLPEGL 168 >UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyoglomus RepID=B8E2G5_DICTD Length = 166 Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW---QQVQLESWKHHNQDMII 72 + K+G +GI+G ++++ + +++ Q ++ +++ LE+ + HN+ +I Sbjct: 4 IAKLGEPFGIKGGIKIWPFFDLIDTLKKGQKIYLSWGDTLLVRRELSLENIREHNKGYVI 63 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 ++ R+ A + ++++ LP+L EG YY +MG V G LGKV +++E Sbjct: 64 YFSEIETREDAEKIRGNWLLIEEEDLPKLPEGQYYTYQIMGLSVYEESGEYLGKVKEILE 123 Query: 133 TGSNDVLVIKANLKDAF 149 TGSNDV +++ +D + Sbjct: 124 TGSNDVYIVEGEDEDIY 140 >UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli RepID=RIMM_BACA2 Length = 174 Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 95/172 (55%), Gaps = 13/172 (7%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-----WFIQKAGQWQQVQLESWKHHNQDM 70 +GK+ +++GI+G +RV S T+ AE Y+P F + A + +V + + + H Q Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEE--RYKPGNTLYLFAEGAAEPIKVTVSAHRLHKQFH 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +++ K + + L N I V L +LEE ++Y+ +++GC+VV+ +G +G V ++ Sbjct: 66 LLQFKEMPSLNEVEHLRNMVIKVPEEDLGELEEDEFYFHEIIGCEVVSEDGELIGTVKEI 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+NDV V+ G K+ L+P++ V+K +++ + I++ G Sbjct: 126 LTPGANDVWVVARK-----GKKDALIPYI-ASVVKDININEKKIKIHVMEGL 171 >UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingomonadales RepID=RIMM_ERYLH Length = 169 Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 7/154 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD-MI 71 P+ L + ++G+RG +R+ E E++ + + + L+S + N+ I Sbjct: 6 PLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSF------NEGTLTLKSVRSDNKGGAI 59 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + V R+ A L + V LP LEEG+YY+ DL+G VT G +GKV+D+ Sbjct: 60 ARFAEVQGREQAEKLRGTTLTVPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVH 119 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 G+ D++ I + G+K +VP V++ Sbjct: 120 NYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVE 153 >UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMM_HELMI Length = 171 Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 7/169 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH--NQDMIIK 73 +G++ ++ G+RG +R++ TE + + F++ Q L H + +I+ Sbjct: 7 VGQIVNTQGVRGQVRLWPLTEKPSRFNEIKRVFVEAPPQGAPEVLTITSAHPLKKLVIVS 66 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + + D A L C + + ++P E YY L G V T G LG++ +++ET Sbjct: 67 FQEISDMTQAERLKGCYLTIPVEEVPAPEPDSYYHFQLEGLSVFTEAGERLGQIEEILET 126 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V+ + A E L+P L V+ KVDL ++ V G Sbjct: 127 GSNDVYVV----RQASPPGEVLIPALKS-VVLKVDLAAGTMTVRLPDGL 170 >UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Caulobacteraceae RepID=B4RCD0_PHEZH Length = 167 Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 73/129 (56%), Gaps = 2/129 (1%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I++G++ ++G+RG +R+ S T + ++ DY+ +++ + L S + ++++ Sbjct: 6 ILVGRVAGAFGVRGEVRLTSYTAEPSALLDYR--DLKREDGRPALTLLSGRPAKGGLVVR 63 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + V+ R+ A L + + LP+ EE ++Y DL+G V T +G LG+V ++ + Sbjct: 64 AQEVETREQAEALRGLNLYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNVQDF 123 Query: 134 GSNDVLVIK 142 G+ D+L I+ Sbjct: 124 GAGDLLEIE 132 >UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacilli RepID=RIMM_GEOTN Length = 175 Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 10/153 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIF---DYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++GIRG +RV S T+ E + + F + + +V ++S + H ++ Sbjct: 10 VGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLL 69 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G D + + V SQL +L EG+YY+ +++ C VVT G +GKV +++ Sbjct: 70 SFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGETIGKVKEILT 129 Query: 133 TGSNDVLVIKA-NLKDAFGIKERLVPFLDGQVI 164 G+NDV V++ + DA L+P++D V+ Sbjct: 130 PGANDVWVVRRQDGTDA------LIPYIDDVVM 156 >UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphylococcus RepID=RIMM_STAS1 Length = 168 Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 91/164 (55%), Gaps = 11/164 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQDMIIK 73 +GK+ +++GI+G ++V S+++ E+ F I +K + + + S++ H ++ Sbjct: 5 IGKIVNTHGIKGEIKVKSNSDFTETRFQPGELVIIERKNKEPLEFTIASYRMHKGLHMLT 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G+++ + L I+ + +L E ++Y+ D++GC V + +G+V ++ E Sbjct: 65 FEGINNINDIEYLKGETIMQERDHEEIELGEHEFYYSDIIGCTVFDDDDTPIGRVTEIFE 124 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 TG+NDV V+K G KE L+P++ V+K +D+ R I++ Sbjct: 125 TGANDVWVVK-------GDKEYLIPYI-ADVVKDIDVEGRRIQI 160 >UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococcus oeni PSU-1 RepID=RIMM_OENOB Length = 166 Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 93/176 (52%), Gaps = 27/176 (15%) Query: 16 LGKMGSSYGIRGWLRVFSSTE--------DAESIFDYQPWFIQKAGQWQQVQLESWK-HH 66 +G++ +++GI G L++ +T+ ++E + + +Q + ++Q L + H Sbjct: 6 IGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLIAGEKLVVQSSRPFKQFWLVKFSDHE 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 N +++ K KG D I ++ + P+L EG++ ++G +V+ +G +G+ Sbjct: 66 NINLVEKYKGED------------IFINERKEPRLSEGEFLVSQIIGLKVIDEKGNSIGE 113 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D TG+NDV IK + KE L+P++D QV+KKVDL T ++ ++ G Sbjct: 114 IADSFHTGANDVWTIKKS-----NGKEILIPYID-QVVKKVDLQTSTVTIELLEGL 163 >UniRef50_C7N9T4 16S rRNA processing protein RimM n=5 Tax=Fusobacteriaceae RepID=C7N9T4_LEPBD Length = 169 Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 6/168 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G + ++ +RG +++ S E+ E I + + + + V + + + + I+ Sbjct: 5 INIGTIVGTHHLRGSVKINSIFENIEVIENERVLLEKNEKKKLLVVKKVKRLNEKKAILD 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G+++ D A L ++ + LP+ E ++Y KDL G +V +E +G+VVD+MET Sbjct: 65 FEGIENIDEAKELNGFKVKIRRDLLPERNENEFYIKDLFGIEVF-SENEKIGEVVDVMET 123 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 ++++L+I +D KE +VP +D + + K+D IEV G Sbjct: 124 AAHNILII----EDIETKKEIMVPLID-EFVTKIDFPNNRIEVSLIDG 166 >UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R649_9RHOB Length = 185 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 A P D I++ ++G+++GIRG +RV +D S DY ++ ++ +++ + Sbjct: 2 ANKPEDRILMAQIGAAHGIRGEVRVKPFGDDPLSFGDY--GKLESEDGSRKFKVKRARVQ 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLG 125 ++ K +GV+DR+ A L ++ + +LP+ E E ++Y DL+G + + +G Sbjct: 60 KNVVVTKFEGVNDRNEAEALNGLKLYIPRERLPETEDEDEFYHSDLIGLKALDENKEQIG 119 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V+ +++ G+ D++ I K L PF V+ ++L +EV GF Sbjct: 120 TVLALLDFGAGDLIEIAPKSG-----KSLLFPFTKA-VVPVINLKEGFVEVHAPEGF 170 >UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUD1_9CLOT Length = 171 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 9/150 (6%) Query: 17 GKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKG 76 GK+ + G+RG +RV + AE++ + + ++ Q++++ S + + I+KL+G Sbjct: 9 GKITGTQGLRGEIRVDPWCDSAEALCRLKRLYFEEG--KQELKVVSARTQKRMAILKLEG 66 Query: 77 VDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETGS 135 VD + A+LL N ++ S Q +LE G Y+ +DL+G + V + G D G V D+++TG+ Sbjct: 67 VDSIEQADLLRN-RVLYASRQDFKLEPGRYFIQDLLGVKAVDADSGRDYGAVTDVLKTGA 125 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 NDV I + A+ L+P + VI+ Sbjct: 126 NDVYEITGDDGKAY-----LLPAIPMTVIE 150 >UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobacterales RepID=RIMM_PARDP Length = 167 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G + ++G+RG +R+ S T I Y P + + + ++L + + + Sbjct: 5 VCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGNRSFTIRLT--RPVTGGLGAR 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L GV+ R+ A L + D +LP L + ++Y DL+G V T G LGKV + + Sbjct: 63 LSGVETREQAEALKGVTLWADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIYDH 122 Query: 134 GSNDVLVIKANLKDAFGIKER---LVPFLDGQVIKKVDLTTRSIEVD 177 G+ D+L I FG R L+PF + VDL I D Sbjct: 123 GAGDILEI-------FGPGRRQVLLLPFTR-AFVPTVDLAAGRIVAD 161 >UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfitobacterium hafniense RepID=RIMM_DESHY Length = 170 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +D +++G++ +G++G ++V+ T++ + + + + + +++++ H ++ Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSEV 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L+G++ RD A + + D Q+P L+EG YY+ +L G QV + LG + + Sbjct: 61 YLTLEGINTRDKAEAIRGWAVKADRDQVPPLKEGWYYF-ELEGMQVYEGDVL-LGTLAQV 118 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TG+NDV ++K + E VP L V+K VD+ + ++V+ PG Sbjct: 119 IQTGANDVYLVKGDK------GEICVPALK-TVVKHVDVAGKRMDVELPPGL 163 >UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobacter violaceus RepID=RIMM_GLOVI Length = 181 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 11/171 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA---GQWQQVQLESWKHHNQDMII 72 +GK+ ++ G+RG +RV +T+ AE + + ++ G+ ++Q + Sbjct: 7 IGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDLFVC 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMM 131 + +GV++R+AA L + + +++ P L G+++ DLMG +V + G +G+V DM Sbjct: 67 RFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVSDMT 126 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G ND+LVI+ + G K +VPF+ ++ VDL IEV PG Sbjct: 127 RAG-NDLLVIRLS-----GGKTVMVPFVHA-LVPVVDLEAGRIEVVAIPGL 170 >UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHG4_RHOM4 Length = 179 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 75/139 (53%), Gaps = 8/139 (5%) Query: 11 VDP---IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHH 66 VDP +++G + ++G+RG +V T+D + ++ ++ + + V+LE ++ Sbjct: 4 VDPDELLLMGYVARAHGVRGAFKVVPETDDPTRFETLETIYVGRSPETARPVRLERVQYQ 63 Query: 67 NQD----MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 +++++ V DRDAA L + S LP L EG+++ DL+G +V T G Sbjct: 64 PTRRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLPPLAEGEFFLHDLIGLRVETEAGE 123 Query: 123 DLGKVVDMMETGSNDVLVI 141 +G V++++E ++ + V+ Sbjct: 124 TVGTVIEVLEMPAHLIYVV 142 >UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobacillus RepID=RIMM_LACF3 Length = 169 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIF-DYQPWFIQKAGQWQ-QVQLESWKHHNQDMIIK 73 +GK+ +++GIRG ++V ++T+ + F D ++ K Q ++ +E + H +++K Sbjct: 6 VGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKGLVLVK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 K ++ + + E+ V +LEEG YY+ ++G T +G LGK+ +++ Sbjct: 66 FKQFNNINEVQHFRDAELKVADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKIKEILAP 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ K + L+P +D V+K+VDL + V+ G Sbjct: 126 GANDVWVVDRKQK-----TDLLLPVID-DVVKEVDLAGGKVIVELLEGL 168 >UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodobacteraceae RepID=B7RJU4_9RHOB Length = 194 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES 62 +Q A A D I +G + SYG+RG LR+ S E I +Y P + + + L Sbjct: 7 RQFGAFAMSDKIPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALAL-- 64 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + + ++ V ++ A+ L + D +QLP L + ++Y DL+G +V T G Sbjct: 65 VRPIKNGFVARITDVTSKEEADALRGTLLYADRAQLPSLPDDEFYHADLLGLEVYDTGGT 124 Query: 123 DLGKVVDMMETGSNDVL 139 +GKV + G++D+L Sbjct: 125 LIGKVKTVQNHGADDLL 141 >UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ73_9CLOT Length = 172 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 6/142 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +GK+ + G++G +RV+ +T+D FDY F + ++E ++ +I+K+K Sbjct: 10 VGKIVKTQGLKGDVRVYPTTDDIYR-FDYLEEFYVGKDRENPWEVEDVRYKGNLVIMKIK 68 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A L +I V + +LEEG+++ D++G V T G +G + ++++ + Sbjct: 69 GIDRVEEAEKLVGKDIYVSRDESFELEEGEFFIADMIGMDVYTVSGEKVGVLKEVLQYSA 128 Query: 136 NDVLVIKANLKDAFGIKERLVP 157 NDV VIK KE L+P Sbjct: 129 NDVYVIKNEEG-----KEYLIP 145 >UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobacteraceae RepID=RIMM_CAUSK Length = 192 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +T +P + I++G++ ++G+RG LR+ + TED ++ ++ Q VQ + + Sbjct: 1 MTQSSPQNLILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSPALTVQ--TAR 58 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV--VTTEGY 122 ++ + GVD ++AA+ L + V + LP+ +E +YY DL+G V V T+ Sbjct: 59 VVKDGVVARCAGVDTKEAADALRGLRLYVPRAALPEPDEDEYYLADLIGLPVRHVATDEL 118 Query: 123 DLGKVVDMMETGSNDVLVIKANL 145 LGK+ + G++D+L I L Sbjct: 119 -LGKIKSVQNFGADDLLEIDPAL 140 >UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=3 Tax=rosids RepID=D1IBQ5_VITVI Length = 665 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 24/193 (12%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQK-AGQ--WQQVQ 59 T++ + + +G + S +G++G +RV +T+ E F +P W Q+ +G+ ++V+ Sbjct: 70 TSKVESEFVEVGYISSVHGLQGEIRVKPNTDFPELRFA-EPGIRWLRQQFSGKETIREVE 128 Query: 60 LESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 L + H + I+K G+D + A L ++V P+LEEG++Y +DL+G +V Sbjct: 129 LVEGRGHPGQKTWILKFGGIDTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVT 188 Query: 118 TTE-GYDLGKVVDMMETGSNDVLVI-----------KANLKDAFGIKERL--VPFLDGQV 163 E G +G VV++ TG+ND+L + N K G+ L VPF++ + Sbjct: 189 LKETGEPVGTVVNVFSTGANDLLQVMLDPSVKTPDHTGNPKSETGVSGPLVWVPFVEA-I 247 Query: 164 IKKVDLTTRSIEV 176 + VD+ R +++ Sbjct: 248 VPNVDMNKREMQI 260 >UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XN47_HIRBI Length = 193 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 28/176 (15%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW--------FIQKAGQWQQV 58 ++A +D +V+ ++G ++G+RG +RV S T AE F Y P F K+ Q + Sbjct: 6 SKASLDLVVVAQIGGAHGVRGHVRVRSFTVVAEDCFAYGPLLDENGDVIFTAKSYQENKD 65 Query: 59 QLESWKHHNQDMI--IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 W N+ + +KGV LL V + LP+ EE ++Y++DL+G +V Sbjct: 66 GFVVWPVENRQREEWMAMKGV-------LLH-----VPRNALPEPEEDEFYFEDLIGSKV 113 Query: 117 VTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTR 172 V +G +LG+V+++ G++D+L LK G + ++PF ++I KVD+ + Sbjct: 114 VHEDGRELGQVLNVHNFGADDLL----ELKSPHGT-DYMLPFT-LEIIPKVDVKAQ 163 >UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGD2_9SPHI Length = 177 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 85/166 (51%), Gaps = 7/166 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G + +YG++G + +++E + + F+ K +E + + +K + Sbjct: 9 VGYIAKTYGVKGEIHAVFDVDNSEEYREIESIFVVKDRHMVPYFIEQVRFVQGYVRLKFE 68 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 +DD D A +L ++++ LP+ EE +YY+ D++G VV + ++GKV + ++ + Sbjct: 69 EIDDVDQAKMLVGSKLMLPIDVLPETEEEEYYFHDILGYMVVDADKGEIGKVTQLYDSTN 128 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 D++ + KE L+P++ Q+I+K+D + I V PG Sbjct: 129 QDLIGVTHQG------KEVLIPYIKDQIIQKLDHEQKVIVVTL-PG 167 >UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M790_9BACT Length = 172 Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI----QKAGQWQQVQLESWKHHN 67 D +V+ K+ +G++G +RV T+ E ++ GQ+ + + Sbjct: 3 DRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDGEEVGQYPLKNVGELRSKG 62 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 Q +I++L G+ D A L C I V ++ L EG Y+ +DL+G Q G LG V Sbjct: 63 Q-IILELGGLSDAAEAEALRGCFICVPPDEMVPLPEGQYWIRDLVGLQAKDETGEVLGVV 121 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 D++ TG++D+ I + K+ LVPF+D Q I++V L R + Sbjct: 122 RDVLTTGASDIFEI-----EGLDGKKHLVPFVD-QFIRQVSLDRREL 162 >UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasma phagocytophilum HZ RepID=RIMM_ANAPZ Length = 171 Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I+LG + +++G+RG +++ + T D I Y P + + +V + S N +I K Sbjct: 8 ILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGP--LTDGSESLKVSVMSV-IKNGCVIAK 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + G+DDR +A L N ++ V SS LP+L+ ++Y +L+G V + G V ++ Sbjct: 65 ISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVFNF 124 Query: 134 GSNDVLVIKA--NLKDAFGIKERLVPFLD 160 GS D++ I K+ F + P +D Sbjct: 125 GSGDIVEISTPQGKKEMFSFTSNIFPSID 153 >UniRef50_Q08WS7 16S rRNA processing protein RimM n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08WS7_STIAU Length = 163 Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 19 MGSSYGIRG--WLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKG 76 M ++GIRG +R F S+ + +AG+ + +++E + ++ I+ L+G Sbjct: 1 MARAHGIRGEIAIRTFEXRPRRRSMVVERLSVRTRAGEERVLRIEDVRPTPKENIVALEG 60 Query: 77 VDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSN 136 VD R+AA L + L +EG+++ DL+G V G LG V ++ TG Sbjct: 61 VDTREAAEALVGAAVFAYREDLEPPQEGEFFQGDLVGLTAVDEAGQALGTVEEIWNTGEV 120 Query: 137 DVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 LVI++ G E +VPF D + + VDL Sbjct: 121 PNLVIRSA-----GQAELIVPFAD-EFVPSVDL 147 >UniRef50_A7HBQ0 Ribosome maturation factor rimM n=4 Tax=Anaeromyxobacter RepID=RIMM_ANADF Length = 165 Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 13/171 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI-- 71 I LGK+ + G++G L V S ++ + +++ G+ + E + Q + Sbjct: 4 IRLGKVVRAVGLKGHLGVAGSEG---ALATVRRIALRREGEPEPPLQEVLEARPQGRLWA 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++++GV DR +A E++ LP+ E +YW DL G VVT G +G V + Sbjct: 61 VRIEGVSDRTSAEAWVGAEVLALREDLPEAGEARHYWADLEGLPVVTVAGAAIGTVTGLY 120 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG DVLV+ E+LVP +VD+ R + VD G Sbjct: 121 ETGGVDVLVVTTEEGG-----EKLVPLAP---YVEVDVAGRRVVVDPPEGL 163 >UniRef50_B1CC26 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CC26_9FIRM Length = 162 Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 86/154 (55%), Gaps = 10/154 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + +V+GK+ + +GI+G L+V T+D + FI+ ++ ++ + + + +I Sbjct: 3 NNVVIGKIFNVHGIKGELKVRPLTDDINRFKILKRCFIKN----KEYEVSAARINKDQII 58 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +KLKG+DDR+ A +L N + V LEEG+Y+ +DL G +V+ + ++G + D++ Sbjct: 59 LKLKGLDDRNEAEILKNEYVEVLREDSVGLEEGEYFIEDLKGLKVLDEDDNEIGIMSDVL 118 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 + D+ V K G KE+++P L +++ Sbjct: 119 TNAAIDIYVFKIE-----G-KEQMLPALKENILE 146 >UniRef50_C1SG75 16S rRNA processing protein RimM n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SG75_9BACT Length = 173 Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ-QVQLESWKHHNQDMII 72 I +G++ +++G+ G L + TE E D Q + G Q +++E + + ++++ Sbjct: 8 IRVGRLINTHGLDGELVLQVLTESPEVFDDMQYMMLAVKGNVQASLEIEYMQEYKGNILV 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 GV+D D A E+V+ LP+L+ G+ YW +L GC V G +G + D ME Sbjct: 68 GFAGVEDIDTAKKYKGMEVVIPEEMLPELD-GEIYWHELEGCPVFDKNGELVGALADYME 126 Query: 133 TGSNDVLVIKA 143 G D+ IK Sbjct: 127 AGGADIFRIKC 137 >UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD56_9FIRM Length = 162 Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I + ++ +++G++G +++ T+D + F+ + G+ V ++ Sbjct: 2 IKVAQIINTHGLKGECKLYLVTDDPQHRFEKGRVLHLEDGRTLTVV--RYREQKGFGYCY 59 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G+D + A L + + LP+LEEG YY+ +LM C V + +LG+VVD++ET Sbjct: 60 FEGIDSIEKAEQLKTKNLFIAQDDLPELEEGQYYYHELMNCTVYNEKKENLGEVVDILET 119 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVI 164 G+N VL +K+ +F L+PF+ ++ Sbjct: 120 GANLVLRVKSK-NTSF-----LLPFVPAFIV 144 >UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostridium RepID=RIMM_CLOK5 Length = 162 Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 87/163 (53%), Gaps = 12/163 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G++ +++G++G L+V+ T+D + + +++ + + K ++ +I Sbjct: 3 DFITVGQIINTHGLKGELKVYPLTDDINRFKELKSVYVEGILK----NITGCKLQSKKVI 58 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K++G+D + A + V +LEEG Y+ D++GC+V+ EG GK+ +++ Sbjct: 59 LKIEGIDSIEKALEYKGKYLEVSRENAVKLEEGRYFIVDIVGCRVIDEEGVFYGKISEVI 118 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 T NDV IK G E L+P ++ V+ KVD+ + I Sbjct: 119 HTHRNDVYWIK-------GDNELLIPAIE-NVVLKVDVEKQEI 153 >UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostridium RepID=C5RHQ2_CLOCL Length = 164 Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 12/167 (7%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW-KHHNQD 69 V+ + +G + + +G++G +V T+D + FI+ G+ V SW K Q Sbjct: 2 VEFLAVGIITNVHGLKGEFKVKPLTDDIRRFNKLKKVFIK--GKEYNV---SWCKLQPQK 56 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K++G+D + A N + VD +L EG Y+ DL+GC VV G D G + D Sbjct: 57 VIVKVEGIDTVEEAMRYKNEYMQVDRENAIKLPEGRYFVADLIGCNVVDHNGKDEGVIKD 116 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 ++ TGSNDV ++++ G ++ L+P +D V+ +D+ R I + Sbjct: 117 VIFTGSNDVY---WSIRE--GREDLLIPVID-PVVDTIDIEKRVITI 157 >UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAC2_WEIPA Length = 191 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTE-DAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +GK+ +++GIRG +R+ +T+ AE + IQ VQ+ + + H Q M++ Sbjct: 29 VGKIVNTHGIRGEVRIVPTTDFPAERFKKNKNLIIQTPEGNLTVQIATSRQHKQFMLVSF 88 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-LGKVVDMMET 133 G+ + + +CE+ V L + ++Y+ +++G V+ + +GKV ++M Sbjct: 89 VGMGNINDVEQYKDCEVFVADELQQALPDDEFYYHEIIGLDVIDNATNEIIGKVSEIMPM 148 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +NDV V+ A G ++ L+PF++ V+ +DL T + +V+ Sbjct: 149 PANDVWVVHAK-----GKEDLLLPFIE-DVVTAIDLDTGTAKVN 186 >UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermomicrobia (class) RepID=B9KXC6_THERP Length = 184 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 76/143 (53%), Gaps = 4/143 (2%) Query: 2 SKQLTAQAPVDP--IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ 59 ++Q + P P + +G++ ++G+RG +++ T E I + ++ + + Sbjct: 7 NRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLE--YVYLGEEPTPRR 64 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + ++L+G+ R+ A + + +D SQ L E +YY +++G QVV Sbjct: 65 LLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDE 124 Query: 120 EGYDLGKVVDMMETGSNDVLVIK 142 G LG+V++++ETG+NDV V++ Sbjct: 125 AGNVLGRVIEILETGANDVYVVQ 147 >UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWB1_ALIAD Length = 177 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLE--SWKHHNQDMII 72 +G + +G+RG +RV+ T+ E F +++ G +LE S + H I+ Sbjct: 7 VGVVTKPHGLRGEVRVYPRTDFPEERFSPGSRLWLRPPGSEPVAELEVRSGRQHQNLWIV 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KG E+ V L L EG YY+ L+G +V++ EG LG + ++ Sbjct: 67 GFKGYHAISDVESWRGYELCVPEDMLHPLPEGAYYYHQLVGLEVISDEGEPLGVLAEVWT 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V++ G + L+P + VI VDL R + V PG Sbjct: 127 PGANDVYVVRKP-----GQPDLLLPAIR-DVILSVDLEARRMTVHLLPGL 170 >UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMM_CARHZ Length = 172 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 86/168 (51%), Gaps = 6/168 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G + ++GI GW++V T+ + + + F +K + +++E + + +++K Sbjct: 5 IAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQLQAERILVK 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 ++D AN L + + +++ QL+E ++Y L G V +G V +++ Sbjct: 65 FMEINDIKEANKLIFGYLKIPKNEIVQLKENEFYLFQLKGLTVYDLNYQKIGVVRTVLKN 124 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +ND+LVI D KE L+PF+ +K+V+L I+V+ PG Sbjct: 125 PANDLLVI-----DTIHDKELLLPFIK-VFVKEVNLPEGFIKVELLPG 166 >UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Aurantimonadaceae RepID=Q1YDR7_MOBAS Length = 194 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 6/154 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P++LG +G + GI+G RV S T D + Y P ++ + K+ ++ Sbjct: 9 NPVLLGVVGGAQGIKGECRVRSFTADPTDLGAYGPLVDASGNRYTVLSARVAKNV---VV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ K V DR+ A L ++ VD S LP+ + D +Y +DL+G V T G +G V+ Sbjct: 66 VRFKEVADRNHAERLNGRKLFVDRSVLPEPADDDEFYLEDLVGYAVETVAGDAVGTVIAF 125 Query: 131 METGSNDVLVIKANLKDAFGI--KERLVPFLDGQ 162 + + D++ I+ I E +P +D + Sbjct: 126 HDFNAGDIVEIRPTKGQTLMIPFSEAAIPVIDAE 159 >UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYR2_9DELT Length = 185 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 2/128 (1%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA--GQWQQVQLESWKHHNQDMIIK 73 +G++ G++G L+V + F+ A G L + + ++I+ Sbjct: 16 IGRIVKPQGVKGELKVLPLAGAPLDFSGLEELFLLPASGGPPLAYPLLAVRSQGGALVIR 75 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L GVDDR+ A L + + + + +LP L D YW L G T EG +G V D M T Sbjct: 76 LAGVDDRNQAEALRDRVVALAAGELPPLAPDDIYWHQLAGLAAYTAEGRKVGLVTDFMLT 135 Query: 134 GSNDVLVI 141 ++ +LVI Sbjct: 136 AAHPLLVI 143 >UniRef50_A5CF62 Ribosome maturation factor rimM n=2 Tax=Orientia tsutsugamushi RepID=RIMM_ORITB Length = 164 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 4/131 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G + S YGIRG + + S T+ A +I +Y+ K + +++ S K ++ +I Sbjct: 8 IPIGIISSPYGIRGQVAIKSFTDPASNILNYE----LKDYRKNIIKIHSAKILSKKIICN 63 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + + R AA LT ++ + +LPQL + +YY +L G +V EG +GK+ ++ Sbjct: 64 IDQIVTRTAAEQLTRTKLYIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNICNY 123 Query: 134 GSNDVLVIKAN 144 + D++ + N Sbjct: 124 NAGDIIEVVYN 134 >UniRef50_Q1IYA4 Ribosome maturation factor rimM n=2 Tax=Deinococcus RepID=RIMM_DEIGD Length = 178 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 AP D LG +G++G ++V+ D + + +++ G + + E+ Sbjct: 3 APADTTRLGYFLGPHGVQGGVKVYV-LGDPQQLLALPRVWVEGQGWLRVRRTEALA---P 58 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ L G+ R+AA L + + LP LEEG YY+ +L G V G LG+V Sbjct: 59 GAVLHLAGITSREAAEALRGLNVYAADADLPPLEEGSYYYHELRGLPVRDANGQPLGEVR 118 Query: 129 DMMETGSNDVLVIKANLKDAF 149 D+ ++G D+LV+ +AF Sbjct: 119 DVWDSGHQDLLVVSHAGGEAF 139 >UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9D0_POPTR Length = 673 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 82/142 (57%), Gaps = 8/142 (5%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQ-KAGQ--WQQVQL 60 T+++ + + +G + + +G++G + V +T+ E F + W Q +G+ ++V+L Sbjct: 77 TSKSESEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVEL 136 Query: 61 -ESWKHHNQDM-IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 E HH + I+K G+D D A LL ++V + P+LEEG++Y +DL+G +V+ Sbjct: 137 VEGRGHHGRKSWILKFGGIDTVDRAKLLVGSTLLVREYERPELEEGEFYSRDLIGMRVIL 196 Query: 119 TE-GYDLGKVVDMMETGSNDVL 139 E G +G VV++ + G ND+L Sbjct: 197 KETGECVGTVVNVFDNGGNDLL 218 >UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IJE3_CLOBU Length = 166 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ +++GI+G ++V+ TED + + ++ + K +I+K++ Sbjct: 8 IGQIINTHGIKGEVKVYPLTEDVNKFKRLKTVLVGGV----EMNILGVKFQKDRVILKIE 63 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A I + + P+L E YY DL C V T+G +LGK+ D++ T + Sbjct: 64 GIDTMNDAETYKQKYIEIPREKEPELPEDTYYVSDLKECIVYDTDGKELGKIFDVISTRN 123 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 NDV IK KE L+P L ++ +D+ + I Sbjct: 124 NDVYWIKEP-------KELLIPVL-RDIVLSIDINEKKI 154 >UniRef50_A9F3N7 Ribosome maturation factor rimM n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RIMM_SORC5 Length = 170 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 1/139 (0%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQDMII 72 + + + +G++G LR+ E ++ + P ++ G + ++ + + ++ +++ Sbjct: 6 VPVADVARPHGVQGELRLRLYNEASDLLLTRPPIRLRLPDGSARDAKIVATRPVDKALLV 65 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 ++ G+DDRDAA L + V L EG++Y D+ G +V+T +G LG V + Sbjct: 66 RIAGIDDRDAAEALRGATVCVPRDAFAPLSEGEFYACDVEGARVMTPDGDLLGHVRSLQS 125 Query: 133 TGSNDVLVIKANLKDAFGI 151 + DVLV++ D+ + Sbjct: 126 YPTCDVLVVERQGADSIEV 144 >UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechococcus sp. PCC 7002 RepID=RIMM_SYNP2 Length = 175 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 11/173 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESI-FDYQPWFIQKAGQWQQVQLESWKH--HNQDM 70 I++G++ ++ G++G +R+ ST+ E Q W Q V+LE + Sbjct: 7 IIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIPGKNLF 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++K + + DR A + +++V + P+LE +Y+ DL+G +V +V Sbjct: 67 VVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKLGIVSD 126 Query: 131 METGSNDVL-VIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + T + DVL V AN K+ LVPF+ ++ VDL +EVD PG Sbjct: 127 LYTAAQDVLEVTDANQ------KKHLVPFVKA-IVPVVDLVENRLEVDAPPGL 172 >UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMM_ACIC1 Length = 176 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G++ ++G+ G + V T+D + F G VQ W H+ ++++ Sbjct: 12 VAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGAVLTTDTGVTLTVQRTRW--HSGRLLVR 69 Query: 74 LKGVDDRDAANLLTNCEIV--VDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 G+DDR A L + VD P+ E +YY L+G +V T G ++G V +++ Sbjct: 70 FAGIDDRTTAEDLRGRVLFAEVDERVRPEDPE-EYYDYQLIGMRVETVTGQEIGVVREVL 128 Query: 132 ETGSNDVLVIKANLK-DAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DVL I+ + DAF VPF+ ++ +VD+ R + +D PG Sbjct: 129 HLPGQDVLAIERSADGDAF------VPFV-AALVPEVDVDQRRLRIDPPPGL 173 >UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5F8_9DELT Length = 197 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 15/177 (8%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF----IQKAGQWQQVQLESWKHHNQD 69 I++G +G +GIRG L + +S D+ S F G+ + + + + H Sbjct: 7 IIVGDVGRPHGIRGELGI-NSHADSPSYFARGALLRLSPPADPGRGKDYVVRAARPHQGR 65 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV----VTTEGYDLG 125 +++ L GV DR+AA L + V S+L + G+ + +L+G +V DLG Sbjct: 66 ILVTLDGVSDRNAAEALRGLAVCVPVSKLDPPDPGEVFLHELLGLRVRLAGAQPADPDLG 125 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+ ++G ++ +I +DA G +E L P D +++ +DL R +D PG Sbjct: 126 VLEDVRDSGGAELWII----RDAKG-REILFPAAD-ELVPDLDLEARIAVIDPPPGL 176 >UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseiflexus RepID=RIMM_ROSS1 Length = 182 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 92/179 (51%), Gaps = 26/179 (14%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAE-------SIF---DYQPWFIQKAGQWQQVQLESW 63 +++GK+ ++G+RG +++ + T+ + ++F + +P+ +Q+ + + L Sbjct: 12 LLIGKVIDAFGLRGEIKIRAITDQVDHLRRHVRTVFLGEERRPFTLQRVHEPKAGIL--- 68 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 I+ L GV DR A L E+ + L++ +Y+ L G +V+ + G + Sbjct: 69 -------ILSLGGVTDRTTAEALRGAEVTIRECDAAPLDQDEYFIHQLYGLRVIESGGGE 121 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +G V ++++TG+NDV+V++ G + L+P + V++++D+ I V PG Sbjct: 122 IGVVREVVQTGANDVIVVERQ-----GRSDTLLPMIH-DVVERLDVAAGQIVVRLLPGL 174 >UniRef50_Q1AW75 Ribosome maturation factor rimM n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RIMM_RUBXD Length = 163 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 DP+V+G + + +G+RG +RV + E P ++ ++ + + + Sbjct: 6 DPVVIGTITAPHGVRGTVRVRPAGEGRHLREGLSPLV-----GGRRRRILRARRTPKGFL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L+GV DR A L ++++D S+L EE ++Y DL+G + V G LG+V++ Sbjct: 61 VDLEGVPDRFRAAELRGEDLLLDRSELDAPEEDEFYVADLVGLEAVDERGGALGEVIETF 120 Query: 132 ETGSNDVLVIKAN 144 T +++VLV++ Sbjct: 121 PTPAHEVLVVRGE 133 >UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliphilus RepID=RIMM_ALKMQ Length = 168 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ +++GI+G L+V S ++ E + + +IQ G ++ + + K+ +I+ + Sbjct: 7 VGQIVNTHGIKGELKVTSLSDYLERFEELEWVYIQ--GYDEKYYIGNIKYRPTTVILSFE 64 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G D+ + +++D SQ +L E +Y DL+G T E LGK+VD+++ GS Sbjct: 65 GYDNINIVEQFKGKYVLIDESQRRELPEDTFYKADLIGLDGYTVEEVYLGKLVDIIQAGS 124 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 N+V V +D K+ L+P + + I ++ L + I VD Sbjct: 125 NEVYV----FRDKETNKDILIPAVK-EFIPEISLEKKRITVD 161 >UniRef50_Q024L7 Ribosome maturation factor rimM n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=RIMM_SOLUE Length = 176 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 10/121 (8%) Query: 14 IVLGKMGSSYGIRGWLR--VFSST----EDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 + + +G + G RG + V SS +D + +F + P + +AG+ ++V+ E+W +H Sbjct: 9 VTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPG-LPEAGERREVE-EAW-YHL 65 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGK 126 Q +++K +GVD A L E+ + +SQ L+EG+Y+ DL+GC+VV + G LGK Sbjct: 66 QTLVLKFRGVDTISEAESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSGQSLGK 125 Query: 127 V 127 V Sbjct: 126 V 126 >UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehalococcoides RepID=RIMM_DEHE1 Length = 167 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 25/176 (14%) Query: 14 IVLGKMGSSYGIRGWLRV-----FSSTEDA--ESIFDYQPWFIQKAGQWQQVQLESWKHH 66 I++GK+ +GI G L++ F DA E + P+ I + WQ+ Q Sbjct: 8 ILIGKVLGVWGINGGLKIEVLTDFPERFDAGNELLIGRAPYTISQT-SWQKAQ------- 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I+ L + DAA L+ ++ + ++ L +L +G YY L+G +V G +G+ Sbjct: 60 ---VIVHLSEITGIDAAEELSGAQVEIPAAALKKLPKGVYYDFQLIGLEVTDLSGNRIGQ 116 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ SND+ V ++G KE L+P + V+K+++L + +D PG Sbjct: 117 IKEILHMPSNDIYV------SSYGAKEALIPAVK-DVVKEINLQKGQVIIDPIPGL 165 >UniRef50_B2IDX8 Ribosome maturation factor rimM n=2 Tax=Beijerinckiaceae RepID=RIMM_BEII9 Length = 173 Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 12/157 (7%) Query: 25 IRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH-HNQDMIIKLKGVDDRDAA 83 +RG +R+ S TE ++I Y P + A + + S + N + +++GV R+AA Sbjct: 1 MRGEVRLQSFTEVPQAISAYGP--LSDASGKKSFSIASLRLVKNAVFVARIEGVTTREAA 58 Query: 84 NLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQ--VVTTEGYDL--GKVVDMMETGSNDVL 139 LTN + V LP EE ++Y DL+G V +G ++ G++ D++ G D+L Sbjct: 59 EALTNLSLYVSREALPPPEEEEFYLADLIGLDAFVADADGKEVLFGRIADVLNFGGGDIL 118 Query: 140 VIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 I + G + RL+PF QV+ ++DLT R + V Sbjct: 119 EIAPS----DGGETRLLPFTR-QVVPRIDLTARRVLV 150 >UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SPN7_9FIRM Length = 181 Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D + +G + SS+GI+G ++V+ +T+D + + ++ + +V S K +I Sbjct: 7 DRLRVGVITSSHGIKGEVKVYPTTDDNDRFKTLEKCYLSNGRETLEVNCTSCKFLKNMVI 66 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K + D+ + N +I+VD L +G+++ D++ V +G + D++ Sbjct: 67 LKFEEYDNINDIERFKNYDILVDREDAVPLMDGEFFICDVLDADVYDQNDEHIGILDDVL 126 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 ET +NDV V+K KD G E L+P + + VD R ++V Sbjct: 127 ETPANDVFVVK---KDDGG--ELLIPVV-SDFVYDVDTENRKVKV 165 >UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobacteria RepID=RIMM_TRIEI Length = 208 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 6/145 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE----SWKHHNQD 69 I +GK+ + G++G LRV+ S++ E + ++ GQ + + +E + Sbjct: 5 IEIGKIVAPQGLKGDLRVYPSSDFPERFTEPGKRWLLSPGQVEPISIELLSGRYVPGKGL 64 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKVV 128 +I+L G+ R A L N +++++ PQLE ++Y DL+G V+ G +GKV+ Sbjct: 65 YVIELAGIKSRQQAEALRNSQLLIEKGDRPQLEADEFYVPDLIGLTVINQLNGKTIGKVI 124 Query: 129 DMMETGSNDVLVIKANLKDAFGIKE 153 +++ G ND+L ++ D I E Sbjct: 125 NIIFAG-NDLLEVEKISTDTPVISE 148 >UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCM3_THET1 Length = 179 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 P + +++G++ S +G+RG ++V T++ E + ++ A ++ S + Sbjct: 10 PHPPDNYVIVGRILSPHGVRGEVKVEPITDNPERFKQLRQVYVGDALH----KVVSVRVL 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++++ +G++ + A L+ + + Q+ L E +Y DL G +VV+T G LG Sbjct: 66 PKFVLVRFEGMESPEQAKALSGMYLYIPKEQVMPLPEDTFYHFDLQGMEVVSTSGEPLGT 125 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ +NDV V+ E L+P + V+K VDL R + V+ PG Sbjct: 126 LREILIREANDVFVVDHPR------GEILIPAIK-DVVKDVDLENRRLVVELIPGL 174 >UniRef50_Q7MA05 PUTATIVE 16S RRNA PROCESSING PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7MA05_WOLSU Length = 130 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 10/122 (8%) Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ---LEEGDYYWKDLMGCQVVTTEG 121 H NQ + ++ R+ A LLTN + + Q LEEG+++W +++GC+V+ EG Sbjct: 9 HSNQA---RFDEINSREEAALLTNHLLYTTMEKTLQECTLEEGEHFWFEIVGCEVM-EEG 64 Query: 122 YDLGKVVDMMETGSNDVLVIKAN--LKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LGKV + G+ D L+I+ + L+ A GIK LVP++D + + D+ R +E Sbjct: 65 ERLGKVEGIERLGAVDYLIIQTDPLLQKALGIKRFLVPYID-RFVLLADVKNRLVECSGA 123 Query: 180 PG 181 G Sbjct: 124 KG 125 >UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3387B Length = 195 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 94/175 (53%), Gaps = 10/175 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKH--HNQDMI 71 +G + G++G L+V SST+ E + +I + Q V+L S ++ I Sbjct: 16 IGTIVGPRGLKGELKVLSSTDFPERFEISEEHWISDPNKSTLQSVKLISSRYVMEKNIYI 75 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL-GKVVDM 130 ++L+G++ R+ A LL N ++ + + +P+L++ +Y+ L+ +V + L G V D+ Sbjct: 76 VRLQGIETRNQAELLRNYKLFISNHSIPELKKDEYHISQLINLEVYHQKTKKLIGIVTDV 135 Query: 131 METGSNDVLVIK---ANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG +D+L I+ +L ++ ++ LVPF+ +++ VDL R IE++ G Sbjct: 136 FTTG-HDLLEIELENPSLPESDKKQKFLVPFV-YEIVPIVDLVNRRIELNPPKGL 188 >UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechococcus RepID=RIMM_SYNJA Length = 186 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 12/173 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ---LESWKHHNQDM 70 +++G++ +++G+RGWLRV ++ E + + P ++Q+ + + +E + + Sbjct: 10 LLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGL 69 Query: 71 -IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L+G+ DR AA +++V +SQ LE +Y++ DL+G V +G LG V Sbjct: 70 YLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGL-AVYHQGRLLGHVSA 128 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G DVL I K ++ L+PF+ ++ VDL ++V PG Sbjct: 129 IWAAG-QDVLEIATPDK-----RQVLIPFVKA-LVPVVDLEKGELQVQPPPGL 174 >UniRef50_A7HKS0 Ribosome maturation factor rimM n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=RIMM_FERNB Length = 177 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 25/176 (14%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ----------WQQVQLE 61 D I G + +++G+ G L+++ +F P ++K + + V+ Sbjct: 11 DKIPYGILSNTHGLNGDLKLY--------LFSNMPELVEKITEAVAYNESQKKFVIVKFS 62 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + + I+ L G+D A L I +D S P+ ++G+YY+ +++ +V G Sbjct: 63 KVRKASDYFIVHLTGIDTISEAEKLKGFIIYLDKSFFPKSKDGEYYFFEILNAEVYDNAG 122 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G V D++ETG+NDV+V+K +E L+P ++ ++ K+D + I V+ Sbjct: 123 EFIGIVEDIIETGNNDVIVVKKEK------EEVLIPVIERYIL-KIDKEAKKIIVN 171 >UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synechococcus RepID=RIMM_SYNS3 Length = 187 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 10/154 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQL-ESWKHHNQDM- 70 + +G + + G++G LR+ +++ E + W K ++V+L E + + + Sbjct: 19 LPVGTLVGAQGLKGELRLNPASDFPERFTEPGTRWLQAKGSAPKEVELLEGRQLPGKSLY 78 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV-VTTEGYDLGKVVD 129 +++LKGV++R +A L C ++V + P+L EG+++ DL+G + + +G V + Sbjct: 79 VVRLKGVNNRASAEALVGCTVLVPAKDRPELAEGEFHLLDLVGLEARLAGSDEPIGTVSN 138 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQV 163 ++ +G ND+L IK N K LVPF++ V Sbjct: 139 LI-SGGNDLLEIKLNSG-----KTVLVPFVEAIV 166 >UniRef50_B9L6B3 16S rRNA processing protein RimM n=2 Tax=Nautiliaceae RepID=B9L6B3_NAUPA Length = 173 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 16/173 (9%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQD 69 ++ I + K+G SYGI+GW ++ T D+ F + K ++ L K + Sbjct: 1 MNKIPIAKIGKSYGIKGWQKIHLLT-------DFPEQFKKDKTFPSDKIDLTIEKIDLKR 53 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ---LEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++K KG+D + A LTN + Q + L+E +Y+W D++GC V +G LG+ Sbjct: 54 GLVKFKGIDTPEDAKKLTNRMLYSTEEQTKEDIKLKENEYFWFDIIGCDVY-EDGELLGR 112 Query: 127 VVDMMETGSNDVLVIKAN--LKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 V ++ D LVI N L + K L+ F + +K VD+ + IE D Sbjct: 113 VKEIERANEADYLVINTNPELIEKKYPKRFLIDF--KRHVKDVDVENKKIEAD 163 >UniRef50_D0LKH3 16S rRNA processing protein RimM n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LKH3_HALO1 Length = 176 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 13/170 (7%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK---HHNQDMII 72 +G + +GIRG LRV + + ++ I A ++ + + + ++ Sbjct: 11 IGYVARPHGIRGELRVVTHEPSSSTLLSVSRMAIADA-VYEVASVRAVSGGGSADGAFLV 69 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +L+G+ DR+AA LL + V +LP LE+ + + DL+GC VV +G G V+ ++ Sbjct: 70 RLRGLGDRNAAELLRGRPVGVARDELP-LEDDEVFLADLVGCAVVLEDGTAYG-VIAAID 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G D LVI G ERL+P + + + VDL + V G Sbjct: 128 AGPQDRLVIHD------GEVERLLPLVS-EFVLDVDLEAERVVVAPPEGL 170 >UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodobacterales RepID=RIMM_JANSC Length = 187 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 9/172 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +G + S+G+RG +R+ S + I Y P + Q + L + Sbjct: 5 DHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITL--TRPVKAGYA 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 L GV ++ A+ L + S LP L + ++Y DL+G V+ T G +G V + Sbjct: 63 AMLSGVATKEDADALRGTRLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVA 122 Query: 132 ETGSNDVLVIKA-NLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ D+L + L L+PF V+ VD+ + VD G Sbjct: 123 NHGAGDILELSGPGLPSGL-----LIPFTL-AVVPTVDIAAGRVIVDMPDGL 168 >UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylobacterium RepID=RIMM_METRJ Length = 231 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 7/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII- 72 ++LG+ G ++G+ G +R+ S T D ++I Y + + DM+I Sbjct: 53 VLLGEFGRAHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDMLIA 112 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++KGV R AA L + V +L E+ D Y DL+G V G +G +V + Sbjct: 113 RVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEAGTLVGTIVAVP 172 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G D+L L+ G L+PF + +D+ R + V Sbjct: 173 NYGGGDLL----ELRPPNGGATALLPFTK-AFVPVLDVAQRRVTV 212 >UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RIMM_PELCD Length = 175 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQVQLESWKHHNQDM 70 D ++LG + ++G+RG L++ S +D + +Q F+++ + + + Sbjct: 7 DLLILGVVIGTHGLRGDLKIRGSDQDFPLLSKMHQLVFLREGETVLKCARRKAGWYKGHL 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++++ G D A L CE+ V +P L G+YYW L G V LG + D+ Sbjct: 67 LLQIAGYRDVRAVQHLVGCEVAVRRDDVPGLPAGEYYWFQLKGMTAVDRRLGALGCLEDI 126 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T ++D+ VI + +G E LVP + I VDL + I D G Sbjct: 127 FTTAAHDIYVINGD----YG--EVLVPAVKA-FIADVDLESNRILFDLPDGL 171 >UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXJ7_CHLT3 Length = 168 Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMIIK 73 V+G++ S G++G ++V T+ ES + + +++ K + +VQ+ + K H + Sbjct: 5 VVGEILKSRGLKGEVKVRVITDFPESFLERKSYYLGKTERDAHKVQVLAAKIHKGFAFLL 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDY-YWKDLMGCQVVTTEGYDLGKVVDMME 132 L GVD ++A+LL + VD SQL ++ +GD+ Y +L+G V+ LG++VD+ Sbjct: 65 LDGVDSVESADLLKGQFLFVDESQLMRV-KGDFAYLHELIGLAVLDENEKLLGRLVDLQH 123 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 S DV I+ K ++ L+P +D ++ KVD+ + + V Sbjct: 124 MPSCDVYEIETADK-----QKVLIPAIDDFIV-KVDVENKRVTV 161 >UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C5BWW9_BEUC1 Length = 182 Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 11/171 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +VL ++G++ G+RG +R+ T+D E+ + + + + Sbjct: 8 DDVVLARLGAALGLRGEVRLTVRTDD-ENRLAPGTKVRTDPPAAGPLTIARLRRTGAGYV 66 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 I + DR AA L E+V + P++++ +Y ++L+G + VT +G+ LG+VV + Sbjct: 67 IAFAEIADRTAAEALRGVELVAE----PRVDDDAWYPRELVGLEAVTPDGHVLGEVVAVE 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++DVLV+ LVPF+ ++ VD+ + VD G Sbjct: 123 HPPAHDVLVVVEPSG-----AHALVPFVTA-LVPSVDVAAGRVVVDPPGGL 167 >UniRef50_C1CUT9 Putative 16S rRNA-processing protein RimM n=1 Tax=Deinococcus deserti VCD115 RepID=C1CUT9_DEIDV Length = 194 Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 VD +G +G++G ++++ E + +++ G W +V+ + + Sbjct: 6 VDHTRVGHFLGPHGVQGGIKLYV-LGSPEQVLKLPRVYVEDRG-WLRVR--RAEPLVPGV 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L G+ R+ A L + S LP EEG YY+ +L G V G LG+VVD+ Sbjct: 62 ALHLAGITSREGAETLRGLNVYAADSDLPAPEEGVYYYHELRGLPVRDESGTPLGEVVDV 121 Query: 131 METGSNDVLVIKANLKDAF 149 ++G D+LV++ D+F Sbjct: 122 EDSGHQDLLVVRHEGGDSF 140 >UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBV5_9FIRM Length = 166 Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 81/154 (52%), Gaps = 7/154 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAGQWQQVQLESWKHHNQD 69 ++ I +G + +++G+RG ++V +++ E F +I G +++ + + + H Sbjct: 1 MEKIKIGILTNTHGLRGEVKVKITSDFWEERFAKNAVLYIDVDGHTKELCVVNARLHKGM 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K K DD + + + QL +L E + Y+ ++M +V +G ++G VV+ Sbjct: 61 LIVKFKDYDDINQVEHWKGNALYIFKEQLHELNEDEAYYHEMMNARVQDIDGNEIGTVVE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQV 163 ++ETG+N VL ++ +E L+PF+ V Sbjct: 121 LIETGANLVLRVRGEK------REFLIPFVKAFV 148 >UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactobacillus RepID=RIMM_LACH4 Length = 171 Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 + ++ +++G+ G ++V T+ E F ++ + + +E + Q +I+ K Sbjct: 6 VARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQFK 65 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETG 134 + D D A L +VV +L +G YY+KD+ C V+ E G +GK+VD+ G Sbjct: 66 EITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGKRIGKIVDIQSPG 125 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ND+ +++ + KE +P + V+KKVD+ + + V+ G Sbjct: 126 ANDIWLVRED-----DGKEYWIPNI-ADVVKKVDVAAKKVYVELMEGL 167 >UniRef50_A7H4B3 Ribosome maturation factor rimM n=17 Tax=Campylobacter RepID=RIMM_CAMJD Length = 179 Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 93/169 (55%), Gaps = 13/169 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN-QDM 70 D + + K+G + G++G++++ + ++ + +FI+ + ++ KH+N + Sbjct: 5 DFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKNTKEMLKI-----KHYNASNS 59 Query: 71 IIKLKGVDDRDAANLLTNC---EIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 + + +D + A LTN + + S Q +L++ ++++ D++ C+V E LGKV Sbjct: 60 TVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFDILECEVFE-EDKRLGKV 118 Query: 128 VDMMETGSNDVLVIKANLK--DAFGIKERLVPFLDGQVIKKVDLTTRSI 174 VD++ETG++ + I+++ K + K +P+LD + +K +D+ R I Sbjct: 119 VDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLD-KFVKNIDIEKRQI 166 >UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y0X8_9BACT Length = 175 Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK----AGQWQQVQLESWKHHNQD 69 +V+G++ ++G+RG +++ T+ E F+ + + AG ++ + Sbjct: 7 VVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRDGKHAGSYRVTGMRDALTRGC- 65 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + L+GV+ + A LL C + + + L G+++ DL+G + G LG V D Sbjct: 66 FLAALEGVETIEQAELLRGCSVEIAPDERVPLAPGEFWISDLIGLEACDDRGSKLGVVKD 125 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVP----FLDGQVIKKVDLTTRSIEVDWD 179 ++++G++ ++V++ + G K+ L+P FL G ++ +T R IE W+ Sbjct: 126 IVDSGASQLVVVRDD-----GGKDHLIPAAPEFLLGADLEARRVTLRLIEGLWE 174 >UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6K4_THEAS Length = 181 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 15/172 (8%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ----KAGQWQQVQLESWKHHNQD 69 + +G + ++GI+G L++ T+ E + +++ K +L+ QD Sbjct: 8 VTVGCIVGTHGIKGSLKLKPLTDYPERFLHMETLYLELPQVKGRHRPPRELKILDVRFQD 67 Query: 70 ----MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG-YDL 124 I+ L+G+D + A L I V LEEG Y+ D++G +VV E L Sbjct: 68 GKDLFIVTLEGIDTIEMAEDLKGALITVAPEDRVPLEEGVYWIDDIIGLEVVEDETDAVL 127 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G V D+M TGSNDV ++ G+ +++P G+VI+KVDL R I V Sbjct: 128 GVVEDVMPTGSNDVYEVRT----PDGVL-KMIPA-TGEVIRKVDLEARQIRV 173 >UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechocystis sp. PCC 6803 RepID=RIMM_SYNY3 Length = 185 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 24/179 (13%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW---------QQVQLESWKH- 65 +G + ++ GI+G +RV S++ D+ F+ K +W Q + L+ K Sbjct: 17 IGTIVAAQGIQGEVRVLSAS-------DFPARFLTKGQRWIRKTPQETPQPLTLKKGKQI 69 Query: 66 -HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD- 123 I++ + DR+ A L N +++V ++ LE G+++ DL+G V + D Sbjct: 70 PGKNLYILRFTEITDRNQAEALVNYQLLVPATDRLPLEPGEFHVTDLLGLIVYDHDNGDR 129 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V D G ND+L I D KE LVPF++ ++ V+L + +E+ PG Sbjct: 130 LGIVTDFYSAG-NDLLGITL---DKNPDKEVLVPFVEA-IVPTVELAEQRLEIKTIPGL 183 >UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMM_ACIBL Length = 209 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 17/172 (9%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSST-EDAESIFD--YQPWFIQKAGQWQQVQLESWKHHNQ 68 D I + ++ + G G VFS D +F+ + + + + G+ ++++LE H Sbjct: 11 DFITIARIQKTQGRVG--EVFSELFTDFPELFEQRHHLYVLPEKGERRELELEDHWFHKG 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD---LG 125 +++K +G++ D A L E+ + QLEEG Y DL+GC++ G + +G Sbjct: 69 GVVLKFQGIETIDDAEKLLRSEVQIPRQDRAQLEEGATYVSDLVGCELFEIHGSEARKVG 128 Query: 126 KVVDM-METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 V D+ G +LV+K G +E L+P+++ +K D + IE+ Sbjct: 129 VVADVDFSAGEAPLLVVK-------GDREHLIPYVES-FLKSTDFKAKRIEM 172 >UniRef50_A3PF96 Ribosome maturation factor rimM n=7 Tax=Prochlorococcus marinus RepID=RIMM_PROM0 Length = 179 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 100/182 (54%), Gaps = 26/182 (14%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES---------WK 64 + +G + S +GI G ++V +S+ D++ F++ +W Q + E +K Sbjct: 8 LTVGLITSCHGINGQVKV-------KSLSDFEERFLKPGMRWLQKENEPPSKIELISGFK 60 Query: 65 HHNQD-MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 ++ I+KL+G++ R+ A L +I+V + +LP+L++ +++ +L+ +V T E + Sbjct: 61 QPGKETFIVKLQGINTRNDAEQLKTFKILVRTDKLPKLKKEEFHLLELINLEVKTLENDE 120 Query: 124 L---GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 L GKV++ +E N++L+I+ K+ K+ L+PF+ +++ VD+ + + ++ Sbjct: 121 LKTIGKVIN-LENEKNNLLIIEL-FKNQ---KKVLIPFVK-EIVPLVDIKNQFVIINPPN 174 Query: 181 GF 182 G Sbjct: 175 GL 176 >UniRef50_UPI00017437A2 16S rRNA processing protein rimM n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017437A2 Length = 113 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 6/106 (5%) Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+ + +D+ D+A L ++ + LP+ E D+Y KDL G +V +E +G++VD+ Sbjct: 6 ILDFEEIDNVDSAKELNGYKVKIRRDLLPEKSEDDFYIKDLFGLEVF-SENNKIGEIVDV 64 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 MET ++++L+I +D KE ++P +D + + K+D IEV Sbjct: 65 METAAHNILII----EDIDTKKEIMIPLID-EFVTKIDFPNGKIEV 105 >UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJ48_9DELT Length = 184 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 12/150 (8%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ----KAGQWQQVQLESWKHHN 67 D + +G++ GI+G +++ + +Y + G W+ L + + Sbjct: 13 DLLAVGRVVKPQGIKGEIKIVPYSGRPADFREYHRLWPADGEAPGGGWE---LLATRESG 69 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +I +L G+ DRDAA L + + S LP G+ YW L G +G ++G V Sbjct: 70 GAVIARLAGIADRDAAEALRGRPLAIRSRDLPPAPAGELYWHQLQGLPARDEQGREIGTV 129 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVP 157 V ++ T + +VI D G +E LVP Sbjct: 130 VGLLATPARPTMVI----ADGAG-REILVP 154 >UniRef50_B0S8N9 RimM protein, required for 16S rRNA processing n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S8N9_LEPBA Length = 178 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMII 72 + +G GSS+GI+G+++VF+ E ++ ++ G+ + +E ++ + ++ Sbjct: 8 VKVGVFGSSHGIKGFIKVFTEGETLHTLKAPATCTVEDPQGKTSTIAIEEFRPNGNHFLV 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL--GKVVDM 130 K+KG D + ++ LP+ EG+ Y +DL+G V++ E K+ + Sbjct: 68 KIKGYDTPETVVKYRGYSLLWKKEDLPKPNEGEIYSEDLIGLLVISKETKQPLNYKITQV 127 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE-VDWD 179 M+ ++ +L K + I LVPFL+ Q + DL ++IE + W+ Sbjct: 128 MDNPAHPILECKPIQGEGETI---LVPFLN-QFVGDWDLENQTIECIHWE 173 >UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C7MY86_SACVD Length = 174 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/172 (22%), Positives = 89/172 (51%), Gaps = 6/172 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA--GQWQQVQLESWKHHNQDMI 71 +V+G++ +GIRG + V T+ E F + K G+ + + + + + H ++ Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKMRDGRTRPLTVAAVRPHGGRLL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ V DR AA + +++D +LP +++ D +Y +L G + +G +G V ++ Sbjct: 63 VRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGTVREV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + ++L ++ ++++ +E LVPF+ ++ +V++ I +D G Sbjct: 123 VHSPGGELLAVE--VEESGRRREVLVPFV-AAIVPRVEVDRGRIVLDPPEGL 171 >UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomycetales RepID=RIMM_NOCSJ Length = 184 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 24/181 (13%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-------GQWQQVQLESWKHH 66 +++G++G +GIRG L + T++ E F P + +A + ++V + S + H Sbjct: 6 VLVGRIGKPHGIRGELTLDVRTDEPERRF--APGAVLRAEPPAGSASRLRRVTVRSARWH 63 Query: 67 NQDMIIKLKGVDDRDAA----NLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 +++ + V DR AA +L + + D++ E YY L+G G Sbjct: 64 QSTLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPDE---YYDHQLVGLAAYDVSGA 120 Query: 123 DLGKVVDMMETGSNDVLVIKA-NLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG V ++ G+ D+L ++ + +DA LVPF+ ++ +VDL R + + PG Sbjct: 121 ALGSVTGLVHGGAQDLLTVRTPDGRDA------LVPFVKA-LVPEVDLAGRRVVIADRPG 173 Query: 182 F 182 Sbjct: 174 L 174 >UniRef50_Q2VZV7 Ribosome maturation factor rimM n=3 Tax=Magnetospirillum RepID=RIMM_MAGSA Length = 176 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 7/135 (5%) Query: 29 LRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTN 88 +R+ S TED I Y P ++ + +L+ +I L G+ DRDAA L Sbjct: 20 VRIKSFTEDPADIGFYSP--VENEAGSIKYRLKVTGEVKGLVIATLDGIGDRDAAEALKG 77 Query: 89 CEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDA 148 E+ V +LP+L E ++ + DL+G +G LG V + + G+ DVL IK K Sbjct: 78 TELWVARERLPRLAEDEFLYSDLIGLVAEGVDGKRLGIVKAVADYGAGDVLDIKLEPK-- 135 Query: 149 FGIKERLVPFLDGQV 163 + +VPF V Sbjct: 136 ---GDMMVPFTQASV 147 >UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconostoc RepID=RIMM_LEUMM Length = 173 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 77/145 (53%), Gaps = 6/145 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +G + +++GIRG +++ + T+ A+ F FI V+++S + H ++ Sbjct: 10 VGTIVNTHGIRGEVKIMAITDFAQDRFKKGADLFIDTKQGRIPVKVQSSRLHKNMWLVLF 69 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 GV + + ++ ++ + P+LE+ YY+ +++ VV +G +G V ++METG Sbjct: 70 VGVTNINEIEKYKGDDVYIEGTARPELEDDQYYYDEIIDSTVVDLDGNKIGVVKEIMETG 129 Query: 135 SNDVLVIKANLKDAFGIKERLVPFL 159 +NDV +++ + G + L+P + Sbjct: 130 ANDVWIVQRD-----GQSDALIPMI 149 >UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BF33 Length = 169 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 91/172 (52%), Gaps = 11/172 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDM 70 D +++G++ +G+RG + V ++T+D E F + +AG+ +Q+ +++ + H + Sbjct: 5 DMVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTTLLGVQAGREEQLTVKTARPHQGRL 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +++ + + R+ A + + P E+ D+Y +L+G VV G D+G+V + Sbjct: 65 LVRFEEIPGRNEAERHRGMKFYAE----PVFEDEDFYDFELVGLHVVHN-GTDIGEVTSI 119 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ++ +L + DA G +E L+P ++ +++ +VDL ++ + G Sbjct: 120 VRAPAHRLLEVTL---DAGG-REVLIPLVE-EIVPEVDLENSTVTITPPEGL 166 >UniRef50_A6GIE2 16S rRNA processing protein RimM n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GIE2_9DELT Length = 186 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 13/142 (9%) Query: 14 IVLGKMGSSYGIRGWLRVF-----SSTEDAESIFDYQPWFIQK--AGQWQQVQLESWKHH 66 ++LG + ++G+RG LRV SST ++P + A +V + K Sbjct: 8 VLLGYVAGAHGVRGALRVKLHNAESSTLAPGVALSFRPRGAEDDDAIARHEVTRVAPKPG 67 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT-----TEG 121 ++ + + L GV+ R+AA+ L E++++ LP+L+ ++Y DL+ V+ +G Sbjct: 68 SEMVRLWLAGVNAREAADALRGFEVLIERDALPELDADEFYLDDLVDLPVLRRRDPEAQG 127 Query: 122 YD-LGKVVDMMETGSNDVLVIK 142 +D LG +V + G D+LVI+ Sbjct: 128 FDALGTIVGISSNGEQDLLVIR 149 >UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMM_HYPNA Length = 181 Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQDMI 71 I +G + ++G+RG +RV S T D +++F Y P + +AG+ + K H I Sbjct: 11 IPMGVLKGAHGVRGEVRVKSFTADPDALFTYGP-LMDEAGKVLLTPITARPGKDH---FI 66 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ K ++ + L C + QLP+ +E ++Y++DL+G V T +V + Sbjct: 67 VRPKENLQKEDWDALRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQ 126 Query: 132 ETGSNDVLVIK 142 GS D+L I+ Sbjct: 127 NFGSGDLLEIE 137 >UniRef50_C1E6K5 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E6K5_9CHLO Length = 237 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 30/154 (19%) Query: 17 GKMGSSYGIRGWLRVFSSTEDAESIFDYQP----------------WFIQKAGQWQQVQL 60 G + S++G+RG +RV T+ E F + P + + G ++++ Sbjct: 6 GAVVSAHGLRGEVRVMPFTDFVEERF-FSPNTQYLEDEAQGRGVGGEYNKAPGSVSKIRI 64 Query: 61 ESWKHHNQ----DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE---GD----YYWK 109 S + + +IK+KGV+DR+AA L + V S+ PQL E GD +Y Sbjct: 65 VSGREVTSQGRVECLIKIKGVNDRNAAAALIGRRLFVSSTDRPQLREEQNGDGDDEFYAS 124 Query: 110 DLMGCQVVTTE-GYDLGKVVDMME-TGSNDVLVI 141 +L GC+V+ E G +G V+D+ G +D+L I Sbjct: 125 ELEGCEVIMKEDGKHVGVVIDIYRGAGEHDLLKI 158 >UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQ83_9PROT Length = 187 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G+ +G+RG ++ S TE AE I Y P + ++ L K + + Sbjct: 10 VVVGQFAGPHGVRGEFKLRSFTERAEDIVAYGPLYTEEGRILTASLLREVKPGL--FLAR 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 V + A ++ V LP +E +YY +DL+G +T G +G+V + + Sbjct: 68 APEVKTPEEAAAFKGAKLSVPRRALPAPDEDEYYIEDLIGLTALTPSGEVVGRVRQVADY 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 G+ ++ L G L+PF D + VD + VD Sbjct: 128 GAGPII----ELAPVSGKGALLLPF-DRTHVPTVDFGASRLIVD 166 >UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRI5_DESVM Length = 210 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 8/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G +G +G+RG + V E + + W G + + + + H ++ Sbjct: 7 IEIGLVGRPHGLRGEVGVDFWAESPD-LLRGTLWLRPGRGAPRPHTVAAVRRHQGRPLVL 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMME 132 +G+ DR AA L ++V +LP+ E + Y +L+G +V+ + G LG + D+ Sbjct: 66 FEGIADRSAAETLRGMHVLVPKDRLPEPAEDEVYLHELLGLRVLLHDTGAALGTLDDVQM 125 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G +V I+ A G KE L+P ++ + + +DL R + + PG Sbjct: 126 PGGQEVWSIRT----ADG-KEVLLPAVE-EFVASIDLDAREVRITPPPGL 169 >UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EI68_PEDAC Length = 192 Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 12/172 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-----IQKAGQWQQVQLESWKHHNQDM 70 + K+ ++ G+RG L+V + T+ E F Q V ++S K Sbjct: 27 VAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPFKGMW 86 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +I+L G+D + + + QL +L +G++Y ++G V+ +G LGKV ++ Sbjct: 87 LIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHKIIGLTVI-EDGQTLGKVKEI 145 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G NDV V++ G K+ L+P+L+ V+ KVDL +EV G Sbjct: 146 LSYGPNDVWVVERP-----GKKDLLLPYLN-DVVLKVDLDKSIVEVAVPEGL 191 >UniRef50_A5V9P8 Ribosome maturation factor rimM n=5 Tax=Sphingomonadaceae RepID=RIMM_SPHWW Length = 157 Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 8/130 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 PIVL + ++G++G +R+ TED + + G + L++ + + Sbjct: 6 PIVLAAIIGAHGLQGEVRLKLFTEDMGA-------YRTLDGAGRSFTLKTIRPGPNGAVA 58 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + + DR+AA L E+ V S LP L G+YY DL+G + +G +G + + Sbjct: 59 RFAEIGDRNAAEALRGTELSVPRSALPPLAPGEYYHVDLIGLPCL-VDGAPVGVAAMVED 117 Query: 133 TGSNDVLVIK 142 G+ DVL I+ Sbjct: 118 FGAGDVLEIE 127 >UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_RHOCS Length = 201 Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 69/130 (53%), Gaps = 3/130 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IV+ ++ ++G+ G +++ S T D ++F Y P ++G+ ++ +L + + Sbjct: 5 IVVAQILGAHGVHGRVKLKSFTADETAVFGYAP-LTDESGR-REFKLRRTGTGKDHFLAE 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + G+ ++AA+ L + ++ +LP E E ++Y DL+G VT + G + + + Sbjct: 63 VDGITGKEAADALRGTRLYIERDRLPAPEDEDEFYHADLIGLDTVTADDQPFGTIKAIYD 122 Query: 133 TGSNDVLVIK 142 G+ D+L I+ Sbjct: 123 FGAGDMLEIR 132 >UniRef50_O67156 Ribosome maturation factor rimM n=2 Tax=Aquificaceae RepID=RIMM_AQUAE Length = 166 Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 15/164 (9%) Query: 14 IVLGKMGSSYGIRGWLRV--FSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +V+GK+ ++G+ G L+V ++ E E++ + + +K G W ++E + +I Sbjct: 6 VVIGKVLDTFGLEGELKVRPYAPPEVFENL--EKVYLKRKGGDWVPFEVEWVDFIDDKVI 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 IK KG D D ++ + +LP+L E +YY +L+G +V T +G LGKV + Sbjct: 64 IKFKGYDSIDEVEQFKGAKLFLPKEELPELGEEEYYAYELVGMEVETDKGKKLGKVERVQ 123 Query: 132 ETGSNDVLVI-KANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 + G D LV+ K NL LVPF+ ++ KVD + I Sbjct: 124 DMGPYDALVLDKENL---------LVPFV-SDIVLKVDKENKKI 157 >UniRef50_C0QSS3 16S rRNA processing protein RimM n=2 Tax=Hydrogenothermaceae RepID=C0QSS3_PERMH Length = 169 Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 15/172 (8%) Query: 12 DPIVLGKMGSSYGIRGWLRV--FSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D ++ GK+ ++G+RG L++ F D + + K G + + +E + + Sbjct: 7 DFVIAGKIHGTHGVRGDLKIEIFPPNFDLPDVI----YIKDKEGNFVPLYIEHFS--KKK 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+ KG DD D A + + V+S +LP+L++ +Y L+ V+ G +GK++ Sbjct: 61 NLIRFKGFDDIDKAKKIKHRYFYVESHKLPELDKDQFYEYQLIDMDVIFN-GKVIGKIIK 119 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 + + L+IK + D K R +PF+ + +K+VD R + VD G Sbjct: 120 VDDRLPTAYLIIKC-VDD----KVRHLPFI-KEFVKEVDTEGRKVVVDLPEG 165 >UniRef50_Q0SMF7 Ribosome maturation factor rimM n=22 Tax=Borrelia RepID=RIMM_BORAP Length = 166 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Query: 17 GKMGSSYGIRGWLRVFSSTE---DAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 G + SSYG+ G+ R+ S + D ++ + + + G +V++ + + +K Sbjct: 5 GVILSSYGVNGYARIKSISNNFCDFINLKNNKVLLKKSNGFAIEVKVIDVNIKSNSLFLK 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G+D ++ L E+ VD S L+EG+YY L+G +V + LG+VV E Sbjct: 65 FEGIDAPESVKPLIGFELWVDDSLASSLKEGEYYLGKLIGYTIV-NDNRKLGEVVAFFEY 123 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 +N L +K GIK +PFL I +D ++IE+ Sbjct: 124 LNNVFLEVKV------GIKFFFIPFLS-IYIGNIDAREKTIEL 159 >UniRef50_Q0BRH0 Ribosome maturation factor rimM n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=RIMM_GRABC Length = 186 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I+LG +G +G+RG + V S T D + + Y +AG +Q+ L+ + Sbjct: 4 DLILLGVIGRPHGVRGLVHVVSYTADPDDLTAYG-LLHDEAG--RQIMLDWRADGLAGIT 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMG--CQVVTTEGYDLGKVV 128 I V DR AA LTN + ++ LP +E E D+Y DL+G ++V E LG+V Sbjct: 61 IDGVPVQDRSAAERLTNTRLFINRDALPPVEDEDDFYLVDLIGLEARLVADETL-LGQVA 119 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 + + G+ L I + G LVPF V VD+ + +D Sbjct: 120 QVHDYGAGASLEITRS-----GGASLLVPFTRAAV-PVVDIAAGRVLID 162 >UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthrospira RepID=B5W499_SPIMA Length = 212 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 6/137 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE----SWKHHNQD 69 I +GK+ ++ G+ G +RV+ +++ E + ++QK GQ + +E + Sbjct: 5 IEIGKIVAAQGLDGEMRVYPNSDFPERFIEPGTRWLQKPGQNEPSPVELLGGRFIPGKGL 64 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL-GKVV 128 I++ GV+ R+ A L + + + P L++ ++Y DL+G +V + D+ G V+ Sbjct: 65 YAIEMVGVETREQAEALRDSRLFIQYGARPHLDDNEFYVLDLIGLEVFNQDTQDMIGTVI 124 Query: 129 DMMETGSNDVLVIKANL 145 D++ G ND+L ++ N Sbjct: 125 DVIPAG-NDLLEVQLNF 140 >UniRef50_Q1JX94 16S rRNA processing protein RimM n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX94_DESAC Length = 153 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 SW H Q +++ LKG + + E+ + +LP L+E +YW L G QVV Sbjct: 37 SW--HKQQILLVLKGFEHINKIESFVGAEVYMAVDELPDLDEDSHYWHQLEGLQVVDKRA 94 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG + ++ETG++DV V++ E + P + +I ++DL I+VD G Sbjct: 95 GKLGVLTSLLETGAHDVYVVEGPH------GEVMFPAV-AALITEIDLDRGVIQVDLPDG 147 Query: 182 F 182 Sbjct: 148 L 148 >UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Corynebacterium RepID=RIMM_CORGB Length = 171 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 9/155 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMIIKL 74 +GK+ S+GIRG + V ST+D + F K AG+ + +++ + H +++K Sbjct: 9 IGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKF 68 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 V DR AA+ L + E+G +Y +L +V+ EG D+G+V +M Sbjct: 69 AEVPDRTAADSLRGTRFFAAPLEDEDDEDG-FYDHELESLRVI-HEGEDIGEVTGVMHGP 126 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 + ++L ++ KE L+PF+ ++ +VDL Sbjct: 127 AGEILEVRLTSG-----KETLIPFVHA-IVPEVDL 155 >UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomycetales RepID=RIMM_SACEN Length = 180 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 85/175 (48%), Gaps = 14/175 (8%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----QKAGQWQQVQLESWKHHNQ 68 + +G++ +G+RG L V T+ E + P + + A + + + + H Sbjct: 9 LAVGRIVRPHGVRGELVVEVRTDSPE--LRFAPGSVLGMRRRGAHASENFTVAAARPHAG 66 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKV 127 ++++ +GV+ R+AA L + V + +L ++ D ++ L G +VV G + G V Sbjct: 67 RLLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAGVV 126 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ T + ++L ++ +E LVPF+ +++ ++DL I VD G Sbjct: 127 AEVVHTPAGELLAVRTPDD-----REVLVPFVS-EMVPEIDLEAGRIVVDPPEGL 175 >UniRef50_A8L5A4 Ribosome maturation factor rimM n=2 Tax=Frankia RepID=RIMM_FRASN Length = 218 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 53/218 (24%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-------------------- 51 +P+V+G++G +GIRG + V T+ E F +++ Sbjct: 3 EPVVVGRVGRPHGIRGDVTVDVRTDLPERRFAPGARLVRQVADGPASRPAADAAGAADAV 62 Query: 52 -----------------AGQWQQVQLE--SWKHHNQDMIIKLKGVDDRDAANLLTNCEIV 92 AG L + + H+ ++++ GV DRDAA L + Sbjct: 63 GTAAGPGSAGDSGAARAAGPPVATVLSVVASRWHSGRLLVRFDGVTDRDAAEALRGSFLT 122 Query: 93 VDSSQL-PQL------EEGDYYW-KDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKAN 144 +DS + P + ++G+ +W +DL+G T G LG+VVD++ + ++L I Sbjct: 123 IDSDECGPAVDPDDEDDDGELWWDRDLVGLHARTPAGDVLGEVVDVIHSPGGEILAIGRP 182 Query: 145 LKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 E LVPF+ +++ VD I VD PG Sbjct: 183 EG-----GEYLVPFVR-EIVPTVDPAAGHIVVDPPPGL 214 >UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVQ3_DESAD Length = 185 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAGQW-QQVQLESWKHHNQDMI 71 +V+ ++ +G+RG + S D+ +FD P ++ K GQ ++ + S + H ++ Sbjct: 4 LVVAEVVKPHGLRGEV-CIESHADSPFLFDEVPCLYLAKKGQKPRRFVVRSSRKHKGRVL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + KGV+DRD A L EI+V + LP+ + + Y +L G V +G +G + + + Sbjct: 63 LTFKGVEDRDQAENLRGMEILVREADLPESGDDEVYMYELEGMSVELEDGTVVGTISNFI 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + VI + A G KE L P ++ + + VDL + V+ G Sbjct: 123 LAPGQETWVISS----AEG-KEILFPAVE-EFVLSVDLDAEKVVVEPPEGL 167 >UniRef50_A6Q550 Ribosome maturation factor rimM n=1 Tax=Nitratiruptor sp. SB155-2 RepID=RIMM_NITSB Length = 173 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQ---LEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +K +G+D D A TN + D + L E +Y+W D++GC V EG LGKVV Sbjct: 56 VKFQGIDSVDEAKKYTNAYLYSDEETTKKSFPLGEDEYFWFDILGCDVF-EEGKRLGKVV 114 Query: 129 DMMETGSNDVLVIKAN--LKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 D+ + D L+++ + D K L+PFLD I+ V L + I+ Sbjct: 115 DIQRLPAGDYLLVETDKSFVDMKKAKSFLIPFLD-MFIEDVHLDQKRIDT 163 >UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonella RepID=RIMM_BARBK Length = 191 Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 9/146 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 ++L + +++GIRG + V + + + Y + K ++ V S + H ++I++ Sbjct: 12 VLLAVIRAAHGIRGDVVVNLLGAEPQRLKTYGVLYDDKGRLYEIV---SMRVHKNNVIVR 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KGVDDR A L ++ ++ Q L+ ++Y DL+G +V LG+V Sbjct: 69 FKGVDDRSTAEALKGVQLYIERDQFADDLDTDEFYQIDLIGLRVYDNTNQLLGEVSGFFN 128 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPF 158 G+ D+L ++ K L+PF Sbjct: 129 FGAGDLLEVR-----LISHKTELIPF 149 >UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SQK6_PHYPA Length = 200 Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 94/182 (51%), Gaps = 13/182 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQ-KAGQWQQVQLESWKHHN- 67 D + +G + ++G+ G LR+ SST+ E F+ W + + G+ ++E + Sbjct: 2 DFVEIGIVAETHGVYGELRIRSSTDFPEERFETPGTRWIKKMRMGKPSITEVELIEGRET 61 Query: 68 ----QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEGY 122 +++LKGVD + A+ +++ + + P LEE + Y DL+G VV E Sbjct: 62 IGKQTSWLVRLKGVDTLEKASEFQGATMLIRADERPVSLEEDEDYIPDLLGMDVVIQETK 121 Query: 123 D-LGKVVDMMETGSNDVLVIKANLKDAFGIKERL-VPFLDGQVIKKVDLTTRSIEVDWDP 180 + +G +VD+ +G++D+L ++ K G R+ +PF+ +++ VD+++ +E+ Sbjct: 122 ETIGTIVDVHNSGASDLLRVQLT-KPIRGKDVRIWIPFVK-EIVPVVDISSNRVEISPPD 179 Query: 181 GF 182 G Sbjct: 180 GL 181 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammap... 271 8e-72 UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammapr... 255 5e-67 UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromo... 227 1e-58 UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammapr... 226 2e-58 UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammapro... 215 6e-55 UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiel... 210 2e-53 UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromo... 207 1e-52 UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella ... 206 2e-52 UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammapro... 206 4e-52 UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammapro... 205 7e-52 UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas... 204 1e-51 UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanosp... 201 1e-50 UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammapr... 200 2e-50 UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaprot... 199 3e-50 UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methyloc... 199 3e-50 UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalk... 198 6e-50 UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudom... 198 8e-50 UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylo... 197 9e-50 UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalili... 197 1e-49 UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acineto... 197 2e-49 UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidat... 197 2e-49 UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylob... 196 3e-49 UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylo... 196 4e-49 UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclass... 193 2e-48 UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothi... 192 4e-48 UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallion... 192 5e-48 UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiob... 192 5e-48 UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicr... 192 6e-48 UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella m... 191 8e-48 UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiat... 190 2e-47 UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammapro... 189 3e-47 UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella... 189 3e-47 UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteri... 189 4e-47 UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobac... 188 6e-47 UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkhol... 188 6e-47 UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfur... 188 9e-47 UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammapr... 187 1e-46 UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenz... 187 1e-46 UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteri... 187 1e-46 UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine ... 186 3e-46 UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultu... 185 4e-46 UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidat... 185 5e-46 UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia ... 185 5e-46 UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelob... 185 5e-46 UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobac... 185 6e-46 UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrob... 185 6e-46 UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisser... 183 2e-45 UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkhol... 183 3e-45 UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinom... 182 3e-45 UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Bre... 182 4e-45 UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma p... 182 4e-45 UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococ... 182 6e-45 UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma... 182 7e-45 UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphapro... 181 7e-45 UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingell... 181 8e-45 UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonif... 181 1e-44 UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudov... 180 1e-44 UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenz... 180 2e-44 UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicycl... 180 2e-44 UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera... 180 2e-44 UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomon... 179 3e-44 UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickett... 179 4e-44 UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydro... 179 5e-44 UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfa... 179 5e-44 UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobac... 178 7e-44 UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphyl... 178 7e-44 UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobac... 178 7e-44 UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacilla... 178 7e-44 UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta pr... 178 9e-44 UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria... 178 1e-43 UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionel... 178 1e-43 UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillon... 177 1e-43 UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostri... 177 1e-43 UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, s... 177 1e-43 UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiob... 177 1e-43 UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermob... 177 1e-43 UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosom... 177 1e-43 UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfo... 177 2e-43 UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phylloba... 177 2e-43 UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrh... 177 2e-43 UniRef50_Q9FHG3 Genomic DNA, chromosome 5, TAC clone:K11I1 n=2 T... 175 4e-43 UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera... 175 5e-43 UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera... 175 6e-43 UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostrid... 175 8e-43 UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillal... 174 9e-43 UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacill... 174 9e-43 UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Sel... 174 9e-43 UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbioba... 173 2e-42 UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactoba... 172 3e-42 UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacte... 172 4e-42 UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella... 172 5e-42 UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfo... 172 6e-42 UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=... 172 6e-42 UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodoba... 172 7e-42 UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetel... 171 7e-42 UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomi... 171 9e-42 UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermom... 171 9e-42 UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitroso... 171 1e-41 UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadec... 170 1e-41 UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 170 2e-41 UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdema... 170 2e-41 UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialist... 170 2e-41 UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanoba... 170 2e-41 UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranae... 170 2e-41 UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillon... 169 4e-41 UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttle... 169 4e-41 UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candida... 169 5e-41 UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntroph... 169 6e-41 UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepI... 168 6e-41 UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidith... 168 7e-41 UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter ... 168 8e-41 UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechoc... 168 9e-41 UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacte... 168 9e-41 UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobi... 168 9e-41 UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostrid... 168 9e-41 UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodoba... 168 1e-40 UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfo... 167 1e-40 UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyc... 167 1e-40 UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma p... 167 1e-40 UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa Re... 167 2e-40 UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacilla... 167 2e-40 UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipe... 165 8e-40 UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobac... 165 8e-40 UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacte... 164 1e-39 UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=... 164 1e-39 UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetos... 164 1e-39 UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2... 164 1e-39 UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermoto... 164 1e-39 UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactoba... 163 2e-39 UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthoba... 163 3e-39 UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechoc... 163 3e-39 UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli ... 163 3e-39 UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobia... 162 5e-39 UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Cauloba... 162 7e-39 UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine ... 160 1e-38 UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfit... 160 1e-38 UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococc... 160 2e-38 UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostri... 160 2e-38 UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothe... 160 2e-38 UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pedioco... 160 2e-38 UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacte... 159 3e-38 UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfo... 159 4e-38 UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomy... 159 4e-38 UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostri... 159 4e-38 UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobac... 159 5e-38 UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinom... 159 5e-38 UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfo... 159 5e-38 UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissel... 159 5e-38 UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomi... 159 6e-38 UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxyd... 158 7e-38 UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinom... 158 8e-38 UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodoth... 158 8e-38 UniRef50_Q0AKL5 Ribosome maturation factor rimM n=2 Tax=Hyphomon... 158 1e-37 UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosi... 158 1e-37 UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramid... 157 1e-37 UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobac... 157 2e-37 UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechoc... 157 2e-37 UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotog... 157 2e-37 UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostri... 156 2e-37 UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliph... 156 2e-37 UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidami... 156 4e-37 UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli... 156 4e-37 UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospi... 156 4e-37 UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Therman... 155 4e-37 UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostri... 155 7e-37 UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphapro... 155 9e-37 UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=... 155 9e-37 UniRef50_C0XS98 16S rRNA-processing protein n=1 Tax=Corynebacter... 154 9e-37 UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconos... 154 1e-36 UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucl... 154 2e-36 UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthros... 154 2e-36 UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehaloco... 154 2e-36 UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francis... 153 2e-36 UniRef50_A3TRE4 16S rRNA-processing protein n=1 Tax=Janibacter s... 153 3e-36 UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquet... 153 3e-36 UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonel... 153 3e-36 UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostri... 152 4e-36 UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 152 5e-36 UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Coryneb... 152 6e-36 UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonel... 152 7e-36 UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Maripro... 152 7e-36 UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetoc... 151 8e-36 UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphapro... 151 1e-35 UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Auranti... 150 2e-35 UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotro... 150 2e-35 UniRef50_Q688X2 Os05g0566300 protein n=4 Tax=Poaceae RepID=Q688X... 150 2e-35 UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinom... 150 2e-35 UniRef50_B2GFY3 Ribosome maturation factor rimM n=2 Tax=Micrococ... 150 2e-35 UniRef50_C2KW13 Possible 16S rRNA processing protein n=1 Tax=Ori... 150 2e-35 UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halother... 149 3e-35 UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Par... 149 4e-35 UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomy... 149 4e-35 UniRef50_B1VYW1 Ribosome maturation factor rimM n=20 Tax=Actinom... 149 6e-35 UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synecho... 149 6e-35 UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobac... 149 6e-35 UniRef50_B0JU07 Ribosome maturation factor rimM n=5 Tax=Chroococ... 149 6e-35 UniRef50_C7LP63 16S rRNA processing protein RimM n=1 Tax=Desulfo... 148 8e-35 UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostri... 148 9e-35 UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschi... 148 1e-34 UniRef50_B4WHU3 16S rRNA processing protein RimM n=1 Tax=Synecho... 147 1e-34 UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococc... 147 1e-34 UniRef50_C1TLS3 16S rRNA processing protein RimM n=1 Tax=Dethios... 147 2e-34 UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasm... 147 2e-34 UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyog... 146 4e-34 UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotog... 145 5e-34 UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobact... 145 7e-34 UniRef50_D0WR63 16S rRNA processing protein RimM n=1 Tax=Actinom... 145 7e-34 UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostri... 145 8e-34 UniRef50_C3RL40 Ribosome maturation factor rimM n=4 Tax=Bacteria... 144 1e-33 UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingom... 144 1e-33 UniRef50_Q72DU2 Ribosome maturation factor rimM n=6 Tax=Desulfov... 144 1e-33 UniRef50_A3HW20 RimM n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW20_9... 144 2e-33 UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chlorof... 144 2e-33 UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostri... 144 2e-33 UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microsc... 144 2e-33 UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseifle... 143 2e-33 UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylob... 143 3e-33 UniRef50_D1NUF5 16S rRNA processing protein RimM n=1 Tax=Bifidob... 143 3e-33 UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinom... 142 4e-33 UniRef50_A2C552 Ribosome maturation factor rimM n=8 Tax=cellular... 142 5e-33 UniRef50_C7MB75 16S rRNA processing protein RimM n=1 Tax=Brachyb... 142 7e-33 UniRef50_C2KRG1 16S rRNA processing protein RimM n=3 Tax=Mobilun... 142 7e-33 UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitre... 142 8e-33 UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroh... 141 8e-33 UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomon... 141 1e-32 UniRef50_B0S046 Ribosome maturation factor rimM n=2 Tax=Finegold... 140 1e-32 UniRef50_UPI000196BAC6 hypothetical protein CATMIT_00493 n=1 Tax... 140 1e-32 UniRef50_C0GQX6 16S rRNA processing protein RimM n=1 Tax=Desulfo... 140 2e-32 UniRef50_C8X433 16S rRNA processing protein RimM n=1 Tax=Desulfo... 140 2e-32 UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta p... 140 3e-32 UniRef50_C5SJF8 16S rRNA processing protein RimM n=1 Tax=Asticca... 140 3e-32 UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfu... 140 3e-32 UniRef50_Q1MQV0 Ribosome maturation factor rimM n=1 Tax=Lawsonia... 139 4e-32 UniRef50_B3DTN1 Ribosome maturation factor rimM n=19 Tax=Bifidob... 139 4e-32 UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfo... 138 5e-32 UniRef50_A8SMU8 Putative uncharacterized protein n=1 Tax=Parvimo... 138 5e-32 UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidat... 138 6e-32 UniRef50_Q1IYA4 Ribosome maturation factor rimM n=2 Tax=Deinococ... 138 6e-32 UniRef50_Q5P9G0 Ribosome maturation factor rimM n=4 Tax=Anaplasm... 138 6e-32 UniRef50_A5CVM9 16S rRNA processing protein RimM n=1 Tax=Candida... 138 7e-32 UniRef50_Q73PB6 Ribosome maturation factor rimM n=2 Tax=Treponem... 138 8e-32 UniRef50_A7HKS0 Ribosome maturation factor rimM n=1 Tax=Fervidob... 138 9e-32 Sequences not found previously or not previously below threshold: UniRef50_C5YVW0 Putative uncharacterized protein Sb09g028680 n=2... 153 2e-36 UniRef50_Q6NGI4 Ribosome maturation factor rimM n=1 Tax=Coryneba... 142 4e-33 UniRef50_C1F3B3 Ribosome maturation factor rimM n=1 Tax=Acidobac... 142 7e-33 UniRef50_C7NGX6 16S rRNA processing protein RimM n=1 Tax=Kytococ... 142 7e-33 UniRef50_C4XKL9 Probable 16S rRNA processing protein RimM n=1 Ta... 142 7e-33 UniRef50_Q4BZC6 RimM protein:PRC-barrel n=1 Tax=Crocosphaera wat... 142 8e-33 UniRef50_A0JXU0 Ribosome maturation factor rimM n=4 Tax=Micrococ... 141 1e-32 UniRef50_A6NV55 Putative uncharacterized protein n=1 Tax=Bactero... 140 2e-32 >UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammaproteobacteria RepID=RIMM_SHIBS Length = 185 Score = 271 bits (694), Expect = 8e-72, Method: Composition-based stats. Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL Sbjct: 4 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 63 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE Sbjct: 64 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 123 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP Sbjct: 124 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 183 Query: 181 GF 182 GF Sbjct: 184 GF 185 >UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammaproteobacteria RepID=RIMM_YERE8 Length = 182 Score = 255 bits (652), Expect = 5e-67, Method: Composition-based stats. Identities = 148/182 (81%), Positives = 165/182 (90%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQL P PIVLGKMGS+YGIRGWLRVFSSTE+AESIFDYQPWFIQ+ G+WQ V+L Sbjct: 1 MSKQLNPVVPEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 E WK H+QD+IIK+KGVDDRDAANLLTNCEIVVDS QLP+LEE DYYWKDLMGCQVVTT Sbjct: 61 EDWKRHSQDLIIKVKGVDDRDAANLLTNCEIVVDSKQLPELEEDDYYWKDLMGCQVVTTA 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GY+LGK++DMMETGSNDV+V+KANLKDAFG+KERLVPFL GQVIK VDLT + +EVDWDP Sbjct: 121 GYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDP 180 Query: 181 GF 182 GF Sbjct: 181 GF 182 >UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromonadales RepID=RIMM_PSEHT Length = 178 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 95/178 (53%), Positives = 127/178 (71%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 ++ + IV+GK+G+ YGI+GWL+V S T+D IFD+ PW I + G+WQ +++ W+ Sbjct: 1 MSQENTSSIIVVGKLGAPYGIKGWLKVHSFTDDPAGIFDFSPWLIGQQGKWQTLEVVDWR 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 HN+ I K V+DRD A T+ EI +DS+QLP+L +G++YW+DL+G VVT +GYDL Sbjct: 61 RHNKGFIAKFAQVNDRDEAVAYTHAEISMDSAQLPELPQGEFYWRDLIGMSVVTDKGYDL 120 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V D+METGSNDVLV+KAN KDAFG ERL+PFL VI +V R I VDWDPGF Sbjct: 121 GIVDDLMETGSNDVLVVKANSKDAFGQAERLIPFLTDTVIIEVKHDAREITVDWDPGF 178 >UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammaproteobacteria RepID=RIMM_SHELP Length = 176 Score = 226 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 85/171 (49%), Positives = 127/171 (74%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +P+VLGK+G+S+GI+GWL++ S T+ E IFDY PW I++ G+W++V++ W++ + +I Sbjct: 6 EPVVLGKLGASHGIKGWLKITSYTDSVEDIFDYSPWLIKEQGEWREVKVAQWRYQGKAII 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 L+GV RD A +LTNCEI + + + L E ++YW+DL+GC+VV T+GY +GKV ++ Sbjct: 66 AALEGVTTRDQAQMLTNCEIAIPAEAMKALPEDEFYWRDLIGCEVVNTKGYKMGKVDQIV 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETGSNDVL++KAN KD FG ER++PF+ Q I +V+L + I VDWDP F Sbjct: 126 ETGSNDVLLVKANAKDGFGKTERMIPFVTEQFILEVNLAEKQILVDWDPDF 176 >UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_MARMS Length = 181 Score = 215 bits (549), Expect = 6e-55, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 119/182 (65%), Gaps = 1/182 (0%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MS+ A AP +V+G++ S YG++GW++++S TE + IFDY+ W+++ W+ V+L Sbjct: 1 MSELKQAAAPEQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + + ++ +KG DRD + ++ +D+++LP+LEEGDYYW L G +V+T E Sbjct: 61 SQGRLQGRGLVASVKGYTDRDQVKDICGMDVYIDAAELPELEEGDYYWSQLEGLRVITKE 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LGKV +METG+NDV+V++A + +F +ERL+P+ G + +DL + + VDWDP Sbjct: 121 GVLLGKVSQLMETGANDVIVVRA-CEGSFDREERLIPYAPGTYVLNIDLEQQEMVVDWDP 179 Query: 181 GF 182 F Sbjct: 180 EF 181 >UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAD0_KANKD Length = 173 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 113/167 (67%), Gaps = 5/167 (2%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 P+++GK+ + GI+GW++VFS T+ E+I +Y PW+++ GQWQQV + + + + ++ Sbjct: 7 PLIVGKLNGASGIKGWVKVFSYTDPKENILNYSPWYLKLDGQWQQVLIINGREQGKTVVA 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +L+G +DR+ A EI +D SQLPQLEEG+YYW+DL+G VV G ++G V MME Sbjct: 67 QLEGCNDRNTAESYRGVEIAIDESQLPQLEEGEYYWRDLVGLTVVNVAGDEMGTVEKMME 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 TG+NDVLV+K K+ E L+P++ + KVDL ++ I VDW+ Sbjct: 127 TGANDVLVVKTASKE-----ELLIPYVPEYSVIKVDLESKQITVDWE 168 >UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromonadaceae RepID=RIMM_ALTMD Length = 173 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 125/171 (73%), Gaps = 3/171 (1%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +++GK+G+ YG++GW+++ S TE E IF+Y PWFI G+ ++ Q++ W+ H + ++ Sbjct: 6 DKVIVGKIGAPYGVKGWVKINSYTETPEGIFEYAPWFI---GEEKEYQIDQWRPHGKSLV 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K+ GVD RD A + N +I +++SQLP L + YW++L G +VVTT+GYDLG V ++ Sbjct: 63 AKIVGVDSRDDAERIKNLDININASQLPDLGDEGVYWRELTGMKVVTTQGYDLGVVKEVF 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDV+ +KAN+ DAFG KERL+PF+ +V+++VD + I+VDWDPGF Sbjct: 123 NTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKVIKVDWDPGF 173 >UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RIMM_HAHCH Length = 173 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 2/172 (1%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHHNQDM 70 + + +GK+ YG++GWL+V S T E++ Y W +++ G +L S K + + Sbjct: 3 EKVCIGKIVGVYGVKGWLKVRSFTSPPENMLRYANWELVREDGNRSSAKLRSGKPQGKGI 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +I L GVDDR+ A C+I ++SS+LP LEEG+YYW+ L G V T+EG ++G+V + Sbjct: 63 VIALAGVDDRNLAKSYVGCQIEIESSELPALEEGEYYWRQLEGLTVFTSEGVNIGRVSHL 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDVLV+ + ++ +ERL+P+L GQ I+ +DL + VDWDP F Sbjct: 123 IETGANDVLVVIGS-AESIDKRERLIPYLPGQFIENIDLDKNLMVVDWDPDF 173 >UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_CHRSD Length = 184 Score = 206 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +VLG++ S YG++GWL+V+S T E IF++ W + K G+ + +L + H + + Sbjct: 14 DEHVVLGRLTSPYGVKGWLKVYSYTSPIEGIFEHAEWVLSKRGERRACKLSQGRPHGKGL 73 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L+G+ R+ A +I++ LP L GDYYW L G +V T +G LG+V + Sbjct: 74 VASLEGISSRELAEQWAGADILLPKQALPALAPGDYYWYQLEGLRVETLDGECLGQVNYL 133 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG+NDVLVI+ + + +ERL+PFL VI++VDL + VDWDP F Sbjct: 134 FETGANDVLVIRPSEA-SLDERERLLPFLPDDVIRQVDLDAGRMIVDWDPEF 184 >UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammaproteobacteria RepID=RIMM_NITOC Length = 175 Score = 205 bits (522), Expect = 7e-52, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 120/181 (66%), Gaps = 9/181 (4%) Query: 4 QLTAQAPVDP--IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 +L +A D +++G++ YG++GWLRV+S T+ +I DY+PW++Q+ G WQ +L Sbjct: 2 ELGQEATDDKRYVLVGRISGLYGVQGWLRVYSYTQPRNNILDYEPWYLQQNGAWQARRLR 61 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + + +++ L+G+D+RD A L CEI V QLP +EG+YYW DL+G QV+T +G Sbjct: 62 KGRVQGKGIVVALEGIDERDVAALWVGCEIAVHRDQLPPPQEGEYYWSDLIGLQVITLQG 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG+V ++ETG+NDVLV++ G +ERL+PFL G ++K+VDL + VDWDP Sbjct: 122 EVLGQVDRLLETGANDVLVVR-------GERERLLPFLMGMIVKQVDLQQGLLTVDWDPD 174 Query: 182 F 182 F Sbjct: 175 F 175 >UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZI34_9GAMM Length = 175 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 85/172 (49%), Positives = 122/172 (70%), Gaps = 1/172 (0%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +PIV+GK G+ +GI+GWL++ S T+DAESIF Y+P ++ G Q+V + WK H+ Sbjct: 5 AEPIVIGKFGAVHGIKGWLKIHSYTDDAESIFQYKPLLMKYNGVMQEVNITDWKAHSGTF 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + K+K D R+ + L E++V+ ++LP L E D+YW+DL+GCQV T +GY LG V DM Sbjct: 65 VAKIKSFDVREESQALVGVELLVNINELPDL-EDDFYWRDLIGCQVETDKGYHLGAVTDM 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 METGS DVLV+KAN DAFG K+RL+PF+ QV+ V++T + I V+W+P F Sbjct: 124 METGSKDVLVVKANANDAFGQKQRLIPFIKEQVVLDVNITGKLIIVNWEPDF 175 >UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanospirillales RepID=RIMM_ALCBS Length = 196 Score = 201 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 111/180 (61%), Gaps = 11/180 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA----------GQWQQVQLES 62 +V+G++ +G++GW++V+S T+ ++ YQPW +++ G W+ V++ Sbjct: 18 LVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTG 77 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 ++ + +I +L+GV DR+AA L +I V + LPQ +G+YYW+DL+G +V G Sbjct: 78 FRPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGM 137 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DLG V M+ETG+NDV+V++ + +++ +ERL+P+L VI + L + VDWDP F Sbjct: 138 DLGSVTRMVETGANDVVVVRGD-RNSLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF 196 >UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammaproteobacteria RepID=B8GN77_THISH Length = 167 Score = 200 bits (509), Expect = 2e-50, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IVLG++ YG++GW++VFS T E I Y P + GQW++ ++ K H + +++K Sbjct: 6 IVLGRVTGLYGVQGWVKVFSETRPREEIVRYNPVLLGHEGQWRETRVVGGKAHGKGVVMK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G DDRDAA L EI V QL +L +G+YYW DL+G +VVTT G LG V + ET Sbjct: 66 FQGCDDRDAAAALMGQEIAVWREQLARLPKGEYYWADLVGLEVVTTGGESLGVVDSLFET 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV+V+K G +ERL+P++ G+ ++ VDL ++ VDWDP F Sbjct: 126 GANDVIVVK-------GDRERLIPYVRGEFVRDVDLEAGTLTVDWDPEF 167 >UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaproteobacteria RepID=RIMM_THIDA Length = 189 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 108/181 (59%), Gaps = 14/181 (7%) Query: 8 QAPVDP------IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 P D +V+G++ + +G++GW++V +ED ++ D++ W + + Q Q +E Sbjct: 17 SPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVE 76 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + + H + ++ KL G+DDRDAA L E+ V S LP EE ++YW DL+G V+ EG Sbjct: 77 AVQDHGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREG 136 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +LGKV +ME+G++D+LV+K G +E L+PF+ + KVDL ++EVDW Sbjct: 137 VELGKVDSLMESGAHDLLVVK-------GRREHLIPFV-AAFVGKVDLAGGTVEVDWGED 188 Query: 182 F 182 + Sbjct: 189 Y 189 >UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methylococcus capsulatus RepID=RIMM_METCA Length = 172 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 8/179 (4%) Query: 5 LTAQAPVDP-IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 + + D +V+G++ ++G+RGW++ S T+ ++ Y+PW +++ ++ + Sbjct: 1 MPGNSGNDRSVVVGRVSGAFGVRGWVKAVSFTDPPVNLVGYRPWTLRRGDAERRADVLEG 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H +I++L+GVD R+ A L E+ V SQLP G+YY DL+G +VV Sbjct: 61 REHGNAVIVRLQGVDTREQAEALKGFEVTVRRSQLPPPAPGEYYRVDLVGLKVVNLGETV 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG+VVD+METG+NDVLV++ G +ERL+PF+ G +K V+L I VDWDPGF Sbjct: 121 LGEVVDVMETGANDVLVVQ-------GDRERLLPFVQGVFVKSVNLEESRIVVDWDPGF 172 >UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMI0_9GAMM Length = 169 Score = 198 bits (505), Expect = 6e-50, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 105/171 (61%), Gaps = 7/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + I +G++ YG++GW+R+FS TE +I D+ +++ W+ V++E+ + H ++ Sbjct: 6 ERIRVGRVSGVYGVKGWVRIFSETEPRAAIADFPHLWLRAGADWRLVEVEAGRAHGHGVV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K DR+AA L E+ ++ LP E+G+YYW DL+G +V +G LG++ M Sbjct: 66 MKFAETADREAAYGLMGAELAIERDWLPPAEDGEYYWADLLGMKVEHQDGTALGRISGFM 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG+NDVLV++ G +ERL+P++ GQ I VDL R + VDWDP F Sbjct: 126 ETGANDVLVVR-------GDRERLIPWVRGQYILDVDLEGRRLRVDWDPEF 169 >UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudomonadaceae RepID=RIMM_PSEU2 Length = 179 Score = 198 bits (504), Expect = 8e-50, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%), Gaps = 3/180 (1%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLES 62 T + D IV+GK+ S +G+RG ++V+S T+ ++ DY+ W +++ G +QV+L S Sbjct: 2 NATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVS 61 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + ++ ++ KLKG+DDR+ A LL+ EI V + P L++G+YYW L G +V+ G Sbjct: 62 GRLQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQ 121 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LGK+ ++ETGSNDV+V+K + +ERL+P+ + Q + +D+ ++VDWD F Sbjct: 122 LLGKIDHLLETGSNDVMVVK-PCAGSLDDRERLLPYTE-QCVLAIDMAAGEMKVDWDADF 179 >UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9Z5_9GAMM Length = 172 Score = 197 bits (503), Expect = 9e-50, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 103/172 (59%), Gaps = 4/172 (2%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + I +GK+ ++GI+GW++VFS T+ +I +Y P F+ + G+W ++++ + + Sbjct: 5 EEFIPVGKISGAFGIKGWVKVFSFTDPRTNILEYSPLFLSRQGEWIEIKVSGGHLQGKGV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ + V DRD L E+ + QL EE ++YW DL G V+ E LG+V + Sbjct: 65 VMGIANVTDRDQVQPLIGSELAIKKEQLEPAEEDEFYWSDLQGLTVMNLEDETLGQVDHL 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDVLV+KA ++ ERL+PF+ +++K VDL + I+VDW + Sbjct: 125 LETGANDVLVVKAKGENT----ERLIPFVMEEIVKAVDLDKQLIQVDWSKDY 172 >UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMM_ALHEH Length = 170 Score = 197 bits (502), Expect = 1e-49, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 104/173 (60%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQD 69 D + +G++ +G+RGW++V+S TE E+I DY W++++ G W V+ + + + Sbjct: 5 DDIVPMGEVVGLHGVRGWVKVYSHTEPREAILDYPHWYLRRDDGDWVPVERTAGRCQGKG 64 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ + V+DRD A +I V LP+L EG YYW DL G TT G LG+V Sbjct: 65 LVAAFRDVEDRDRARAYIGLQIGVPRRDLPELPEGQYYWADLEGLAAYTTGGEPLGRVSH 124 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TG+NDVLV++ G +ERLVPF+ GQ +++VDLT IE+DWDP F Sbjct: 125 LFATGANDVLVLQ-------GDRERLVPFVYGQTVRRVDLTAGRIELDWDPDF 170 >UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acinetobacter RepID=RIMM_ACIAD Length = 182 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 6/179 (3%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 T P D I +G++ S+YG+ GWL V+S+TE ++FDY PWFI+ WQ V ++ W Sbjct: 2 TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRW 61 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K H + +++ LK V DR+AA L I V SQLP+ + +YYW DL G V+ + + Sbjct: 62 KPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEE 121 Query: 124 ----LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG++ ++ ETG+NDV+V++A D+ +ER++P+ V+++VDL I V+W Sbjct: 122 QEVNLGQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW 178 >UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=RIMM_BLOPB Length = 189 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 124/182 (68%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 ++K+ P+ P+V+G++ +YGI GW+R+ S TE ++IF Y P+FI W+++ L Sbjct: 8 INKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFL 67 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + WK + I+K++GV +R++A L+ C I++D +Q P + + +YYWKDL+GC V+T + Sbjct: 68 DKWKLIGKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQ 127 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LG ++ ++ET +NDVLV+K + + IK L+PFL +VIK ++L TR++ VDWDP Sbjct: 128 GVLLGDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRTVTVDWDP 187 Query: 181 GF 182 F Sbjct: 188 NF 189 >UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylobacillus flagellatus KT RepID=RIMM_METFK Length = 173 Score = 196 bits (499), Expect = 3e-49, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 13/176 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-----QWQQVQLESWKHH 66 + +++G++ + YG+ GW++V +TE +S+FDY W + + QWQ ++E K H Sbjct: 6 ELVIMGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVEKAKVH 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 N +++KL+G+DDRD A + V +LP+ EEG+YYW DL+G QV + D G+ Sbjct: 66 NDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELPEPEEGEYYWSDLIGLQVRNQQEVDFGQ 125 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VVD+ TG+NDVLV+K G +ERLVPF+ GQV+ +VD +++ VDWDP F Sbjct: 126 VVDVFATGANDVLVVK-------GDRERLVPFI-GQVVLEVDTDGKTMLVDWDPEF 173 >UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WZ27_METML Length = 196 Score = 196 bits (498), Expect = 4e-49, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 23/194 (11%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +V+G++ + YG+ GWL+V TE + +FDY W++ K W+++ +E+ K HN + Sbjct: 4 DNMVVMGRIVAPYGVYGWLKVVPDTEAIDGLFDYDSWWLGKGDDWREMVVETAKIHNDVI 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++KL G+DDRDAA +I V +QLP+ +E +YYW DL+G +V ++G D G + ++ Sbjct: 64 VVKLVGIDDRDAAFACKGKQIAVPRAQLPEPDENEYYWSDLVGLRVTNSQGVDFGVITEV 123 Query: 131 METGSNDVLVIKAN----------------------LKDAFGIKERLVPFLDGQVIKKVD 168 ETG+NDVLV+K + +ERL+PF+ V+ VD Sbjct: 124 FETGANDVLVVKPDALVKPDSSAKADSKAKSDAVPVEAGKDKPQERLIPFV-ADVVLTVD 182 Query: 169 LTTRSIEVDWDPGF 182 L +S+ VDWD F Sbjct: 183 LEAKSMLVDWDEDF 196 >UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclassified Gammaproteobacteria RepID=A4ADG3_9GAMM Length = 179 Score = 193 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 5/178 (2%) Query: 7 AQAPVD-PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 P + ++ GK+ +YGI+GW++V T+ ++ F ++ + + GQ + ++L + Sbjct: 1 MNTPENQMLLAGKITGAYGIKGWVKVQVFTDPPDNFFAFRHHQVLRRGQLETIELVDGRS 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-- 123 + + ++ GVD+R A LL EI V S+LP L +YYW L G QV G Sbjct: 61 QGKGWVARVVGVDNRTDAELLRGTEIWVPQSELPVLASDEYYWHQLQGLQVWCEHGEQRL 120 Query: 124 -LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG+V ++ETG+NDVLV++++ + +ERL+P+L V+ VD ++ V+W P Sbjct: 121 LLGEVDHLLETGANDVLVLRSSEG-SIDERERLIPYLPDSVVLAVDTEAGTMTVNWHP 177 >UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVJ7_HALNC Length = 178 Score = 192 bits (489), Expect = 4e-48, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 112/184 (60%), Gaps = 13/184 (7%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ------KAGQWQQV 58 L +P D +V+G +G ++G++GW + + T A+ I Y+ WF++ AG+W Sbjct: 2 LKPPSPADSVVIGVIGRAFGVKGWSWITTYTRPADGITQYRQWFVRSPADGGDAGKW--Y 59 Query: 59 QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 ++ + +Q ++ KL+G+DDR A LT EI+V + LP++ EG+YYW+DL GC+V Sbjct: 60 RVTKFAAQSQGIVAKLEGIDDRTQAEALTGAEILVPTDALPKVAEGEYYWRDLTGCRVQH 119 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G D G V +++ETG+NDVLV+ G +ERL+PF+ V+ +++ R I VDW Sbjct: 120 VSGQDFGVVQELLETGANDVLVV-----GGEGQRERLIPFIPDDVLVSINIDQRLIVVDW 174 Query: 179 DPGF 182 DP F Sbjct: 175 DPDF 178 >UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallionellaceae RepID=C5V5Y4_9PROT Length = 186 Score = 192 bits (489), Expect = 5e-48, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESW 63 L + +++G++ S++GI+GW+++ +E +S+ Y+ W++ + G W++V + Sbjct: 13 LQPKVSEPMVIMGRVASAFGIKGWVKIQPFSEYVDSLLGYKTWYLGHENGPWREVTVAQC 72 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H++ + + DR AA L I V S LP EEG+YYW DL+G V+ G Sbjct: 73 ETHDKTLAAQFPDCPDRTAAEKLKGLLIAVPRSSLPTQEEGEYYWADLIGMSVINGAGET 132 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V++++ETG+NDVL+++ N D L+PFL+ VI VD+TT++I+V+W F Sbjct: 133 LGTVIELLETGANDVLIVRGNGPD------VLIPFLNS-VIGPVDVTTKTIQVNWSADF 184 >UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6Y0_9GAMM Length = 182 Score = 192 bits (488), Expect = 5e-48, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 98/167 (58%), Gaps = 5/167 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLESWKHHNQDMII 72 I++G++ +GIRG ++V S ES+F Y+ + ++ G+ +QL + + ++ Sbjct: 8 IIVGRIVGVHGIRGQVKVHSDCRPRESLFQYRQFIARQNGRPDIALQLLRGQTSGKGLVA 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 G++DRD A L + + QLP ++G+YYW DL+G +V +G LG+V ++ E Sbjct: 68 AFTGINDRDQALALGGYTLYISRDQLPAPQDGEYYWADLIGLRVENRQGITLGRVSELFE 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 TG+ND+LV+KA+ A E L+PF+ + ++ +DL + VDW+ Sbjct: 128 TGANDILVVKADNSKA----EILIPFVRPRYVEAIDLANGLMRVDWE 170 >UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RIMM_THICR Length = 181 Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 108/176 (61%), Gaps = 5/176 (2%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + + + I+LG++ YG++GW+++FS T+ ++I Y PW ++ +W+ Q+E + Sbjct: 1 MMSSKQDEKIILGQINGIYGVQGWVKIFSHTDPRQNILSYSPWLVKVKNEWRTFQVEEGR 60 Query: 65 HH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + ++ KL+G+DDRD A CEI + QLP EEG +YW L+GCQV + EG Sbjct: 61 AQQGGKSVVAKLEGIDDRDLAREYIGCEIAILPEQLPATEEG-FYWMQLIGCQVTSVEGE 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 DLG+V +++ETG++DVL ++ G+ L+PF+ I VD+ ++ I+VDW Sbjct: 120 DLGQVTEIVETGAHDVLRVEKQSD--AGLVSTLIPFVMETFILDVDVESKQIQVDW 173 >UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella marisrubri RepID=Q1MYQ9_9GAMM Length = 176 Score = 191 bits (487), Expect = 8e-48, Method: Composition-based stats. Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 3/177 (1%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 ++ P + +GK+ YGI+GW++V+S TE E++F Y W + K GQ V++ W+ Sbjct: 2 SKIPDNFTKIGKITGVYGIKGWVKVYSYTEPKENVFSYDGWHLVKKGQLVPVKVREWRTQ 61 Query: 67 NQDMIIKLKGVDDRDAA-NLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 + ++ L DR+ A C++V+D QLP+ EG++Y+ L G VVTT+ LG Sbjct: 62 GKGLVAALDDCQDRNQAQEQYVQCDVVMDKGQLPEPGEGEFYYHQLEGLLVVTTDDVVLG 121 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +V + TG+NDVLV+K K++ +ER +P+ + K VDL I VDWDP F Sbjct: 122 RVDYLFNTGNNDVLVVK-PCKESLDGRERWLPYTN-DCTKDVDLKQGFIRVDWDPEF 176 >UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiatoa sp. PS RepID=A7BX44_9GAMM Length = 168 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 7/174 (4%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 + I++G++ YG+ GW+++FS T I +Y PW + + GQWQ + + K H + Sbjct: 2 SAEKRIIIGRINGLYGVSGWVKIFSYTTPITKILEYSPWQLCQKGQWQILSMYEGKAHGK 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +I +L+ DRD A L +I + SQLP + + +YYW DL+G V+ + LG V Sbjct: 62 GIIARLESSHDRDEAVRLLGADIAIFRSQLPPVSKNEYYWNDLLGLTVINHDNITLGIVD 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+ND+LVIK G KE L+PF+ QVI ++DLT R I VDWD F Sbjct: 122 HLLETGANDILVIK-------GEKECLIPFVLEQVILEIDLTQRIIRVDWDKDF 168 >UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_SACD2 Length = 183 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 109/174 (62%), Gaps = 4/174 (2%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + I +G++ +GI+GW+++ S T+ +++ +Y P ++ ++ ++ ++ Q ++ Sbjct: 11 NLITVGRITGVFGIKGWVKLKSFTDPQDNVLEYSPLLLKTKHGVKECEIAEYQFRPQGLV 70 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT---EGYDLGKVV 128 ++LKGVDDR+AA L ++ +D S LP+L++ D+YW L G +VVT DLG V Sbjct: 71 VRLKGVDDRNAAEALAPVDVAIDKSLLPELDDDDFYWHQLEGLRVVTIYEGNTQDLGVVS 130 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +M TG+NDVL +K + + + ++RLVP++ +KKVDL+ I VDWDP F Sbjct: 131 KVMATGANDVLEVKPDAQ-SIDDRDRLVPYVLDLYVKKVDLSAECITVDWDPEF 183 >UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella burnetii RepID=RIMM_COXB2 Length = 168 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 7/174 (4%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 P D +++G++ YG+RGW++V S T +++ ++ W IQ +WQ ++L++ K H Sbjct: 2 KPNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHEP 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++KL+ +DD + A TN I ++ L L+EGDYYW DL+G VV T G +LG V Sbjct: 62 FLVVKLENIDDPETAKHYTNDLIAIERGALGALKEGDYYWTDLIGLAVVNTHGIELGTVD 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETGSNDVLV+++ +ERL+P+ I+ +DL + I V+WD F Sbjct: 122 SLIETGSNDVLVVRSKE------RERLIPYT-SYTIQSIDLEKKIIVVEWDADF 168 >UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteria RepID=RIMM_POLNA Length = 202 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 15/191 (7%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-----------Q 54 ++ P D + +G++ ++G++GW+++ + D E++F + W++Q Sbjct: 13 SSSLPDDALEVGRILDAWGVKGWVKILPHSTDPEALFSAKTWYLQTPDVKFRPGFSLFSG 72 Query: 55 WQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGC 114 ++++ K H+ ++ K G+DDRDAA L I + S P +YYW DL+G Sbjct: 73 TVSLKVDEAKIHSGAVVAKFSGLDDRDAAEALRGARIFLSRSSFPAASADEYYWVDLIGL 132 Query: 115 QVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIK---ERLVPFLDGQVIKKVDLTT 171 V+ EG LG V D+M TG + VL ++ G ER++PF+ + KVD+ Sbjct: 133 NVLNREGVALGCVRDLMATGPHSVLCVEYASTQEDGTSATAERMIPFV-AAYVDKVDIAG 191 Query: 172 RSIEVDWDPGF 182 + I VDW P + Sbjct: 192 KCITVDWQPDY 202 >UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobacteraceae RepID=RIMM_JANMA Length = 179 Score = 188 bits (479), Expect = 6e-47, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 7/177 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + P D +++G + +YG+ GW+RV + DA+++ + W++ K ++ V++ K H Sbjct: 1 MKVPEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKP-EFHDVEMMQSKIH 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 D++ KL GV RDAA L + + S P L + ++YW DL+G +V +G LG+ Sbjct: 60 TGDVVAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQ 119 Query: 127 VVDMMETGSNDVLVIKANL-----KDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V DMM+ G++ +L + +E L+PF++ Q + VD T + I VDW Sbjct: 120 VSDMMDNGAHPILRVAVPQAAETTDPKAAPQELLIPFVE-QFVITVDRTAKKITVDW 175 >UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkholderiales RepID=RIMM_RALEH Length = 222 Score = 188 bits (479), Expect = 6e-47, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 14/181 (7%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA------------GQWQQ 57 P D + +G +G++YGIRGW++V +DA ++ + W++ Q Sbjct: 40 PEDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVC 99 Query: 58 VQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 V++ + H+ ++ + GV DR+ A L + + + P EE ++YW DL+GC V Sbjct: 100 VKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPEEDEFYWVDLIGCTVS 159 Query: 118 TTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G LG+V +++ G++ +L + L D ERL+PF+D ++ VD + I VD Sbjct: 160 NEQGELLGEVSGLIDNGAHQILQVACVLPDGKAG-ERLIPFVDA-FLRSVDTAGKRIVVD 217 Query: 178 W 178 W Sbjct: 218 W 218 >UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfuromonadales RepID=RIMM_GEOLS Length = 176 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHN 67 + + I +G++ ++GIRG LR+ S + + ES+ + I+ AG +Q+QL+ +H+ Sbjct: 4 SSDNLIAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTRQIQLKKAAYHS 63 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 ++ L+G D + A L E+++ QLP + +YYW DL+G VVT EG LG + Sbjct: 64 GKFLLTLEGFDTIEKAQELAGAELLLQREQLPPPDADEYYWHDLLGLSVVTNEGQALGII 123 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ETG+NDV +++ D +E L+P + VI V++ T ++ + G Sbjct: 124 KDILETGANDVYLVR----DDATKREYLIPAI-ASVISSVNIHTGTMTITPLEGL 173 >UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammaproteobacteria RepID=RIMM_XANC5 Length = 180 Score = 187 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 8/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMI 71 I+LG++ ++G++G L++ S TE +IF YQPW ++ +GQ V + +++I Sbjct: 17 RILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGVRGRDQGKNLI 76 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 GV DRD + EI V S LP + +YYW DL QV T EG LG V + Sbjct: 77 AVFPGVTDRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLF 136 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TGSNDV+V++ G +ER++PF+ +K VD I VDWDP F Sbjct: 137 STGSNDVVVVR-------GDRERMIPFVFPDFVKSVDFDANLIVVDWDPDF 180 >UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NX77_9RHOB Length = 184 Score = 187 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +++ K+G+++GIRG +RV +D S DY + + ++E + + Sbjct: 6 DQKVLMAKIGAAHGIRGEVRVKPYGDDPLSFADYGILTTRDGK--RSFEVERARVQKTVV 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I K KG+ DR+ A L ++ +D QLP+ EE ++Y+ DL G V+ G LGK++ + Sbjct: 64 ITKFKGITDRNQAEELNGIDLFIDRDQLPEPEEDEFYYSDLTGLDVLDQTGETLGKIIAV 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+ D+L ++ + +PF + ++DL + V + Sbjct: 124 QDFGAGDLLEVRPKRG-----RSFYIPFTK-DFVPEIDLENGRVCVSLPEDY 169 >UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteria RepID=RIMM_CLOPH Length = 169 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 95/172 (55%), Gaps = 6/172 (3%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D + +G + S++GI+G ++VF +T+D + + + +++++E+ K Q + Sbjct: 2 EDLLRVGVISSTHGIKGEVKVFPTTDDMNRFKKLKMVTLDTGKEQKELEIENVKFFKQFV 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+K KG+D+ + ++++ L EG+++ DL+G Q +G LG++ ++ Sbjct: 62 ILKFKGIDNINDIEKYKGKDLLISRENAVDLAEGEFFIFDLIGLQAEEEDGNSLGELTEV 121 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TG+NDV VIK KE L+P++D +KK+DL + + V PG Sbjct: 122 LQTGANDVFVIKTKQG-----KEILIPYID-DCVKKIDLNEKKLVVHLIPGL 167 >UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RY72_9GAMM Length = 183 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 7/178 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 ++ +P+ GK+ YGI+GW+++ S T+ AE++F + W +Q+ G V+ + WK Sbjct: 2 NESGSNPLTAGKITGCYGIKGWVKIHSFTDPAENLFRFGKWMLQRRGALVAVEFDHWKPQ 61 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV------TTE 120 + M+ + GVDDRD A +IVV++ LP LEEG++YW+ L G Q + Sbjct: 62 GKGMVAHIAGVDDRDLAESYKGLQIVVEADSLPPLEEGEFYWRQLQGLQAWGREPDSGDD 121 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG V ++ETG+NDVLV+KA D+ KERL+P+L G + +VDL I++DW Sbjct: 122 RVLLGTVDYLIETGANDVLVLKAT-GDSIDDKERLIPYLPGDTVSRVDLEEAVIDIDW 178 >UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KCL6_9GAMM Length = 190 Score = 185 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 103/170 (60%), Gaps = 8/170 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 +++GK+ +GI+GW++VFS T ++I YQPW I+ GQWQ + + + + ++ Sbjct: 29 RLLVGKINGLFGIQGWVKVFSHTNPRKNILSYQPWHIEVNGQWQTLDIIKGREQGKTLVA 88 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 ++K V D D A +I ++ SQLP+L +G+YYW+DL+G V+ E LGKV +++ Sbjct: 89 QIKDVHDMDQARTFIGIDIYINKSQLPKLNKGEYYWEDLIGLNVINQEKIVLGKVSGLVD 148 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TGSN VLV+ G KE VP+++ +I VD+ + I VDWD F Sbjct: 149 TGSNSVLVV-------NGRKEHWVPYIEPFLI-SVDIDKQQIVVDWDDNF 190 >UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia floridanus RepID=RIMM_BLOFL Length = 185 Score = 185 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 116/181 (64%), Gaps = 2/181 (1%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M + P++PIV+G++ +YGI GW+++ S TE E IF Y PWFI +W+ ++L Sbjct: 1 MKVIVINSTPINPIVIGRIKGAYGILGWVKILSFTEKIEDIFVYNPWFIFFRSKWKVIKL 60 Query: 61 ESWK-HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQL-EEGDYYWKDLMGCQVVT 118 E W+ +N++ I+K V DR+ A L+ +VV+S Q P+L + +YYWKD++GC+++T Sbjct: 61 EYWRLMNNKNYIVKFFNVSDRNHAMALSQHNLVVESIQFPKLYNKDEYYWKDIIGCKIMT 120 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G LG+V+ +++T ++D+LV+++ + L+PF+ ++IK VDL + VDW Sbjct: 121 INGKCLGRVISIIDTKAHDILVVRSEEYGFTKYVDCLIPFILKKIIKDVDLIKNIVVVDW 180 Query: 179 D 179 + Sbjct: 181 E 181 >UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia RepID=C4Z931_EUBR3 Length = 178 Score = 185 bits (471), Expect = 5e-46, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 6/175 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 Q D + +G + S++GIRG ++VF +T+DA + + + + +++ S K Sbjct: 9 QRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFK 68 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +I+K KG+DD + + V LEE +Y+ DL+G V + EG +LG + Sbjct: 69 NQVILKFKGIDDINDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVI 128 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+++TG+NDV V+K G + L+P + I VD+ +++V G Sbjct: 129 DDVLQTGANDVYVVKK-----AGANDLLIPAIK-DCILDVDVENGTMKVHLLAGL 177 >UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMM_DICNV Length = 175 Score = 185 bits (471), Expect = 5e-46, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 6/166 (3%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I LG++ +G+RGW+++ S E+IF+Y + + Q ++L + + +I Sbjct: 7 LIALGRIIGVHGVRGWVKIHSECRPREAIFNYSVFQATRHHHAQTLKLLDARRSGKSLIA 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + DRDAA L + V + LPQL+ G YYW D++G V+ G LGKV D+ E Sbjct: 67 LFADICDRDAALQLNGFTLNVTRADLPQLKNGQYYWTDVLGLTVINRSGEHLGKVCDIFE 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 TG+NDVLVI + +E L+PF+ + I ++D + + VDW Sbjct: 127 TGANDVLVINKD------GQEYLIPFISERYIDRIDFENKYLYVDW 166 >UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XB69_OXAFO Length = 180 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 3/178 (1%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 ++ + P D I +G + +YGIRGW ++ + +AE++ + W++ V++ Sbjct: 3 NRAGHIEVPSDLIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLDLPD-MHNVKVM 61 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + +++ G+D+R+AA L I + S+ P+L E +YYW DL+G V G Sbjct: 62 QARRQGDEIVAHFSGIDNREAAEALRGSVICISRSRFPELPEDEYYWVDLIGLSVFNLRG 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG V +++ G++ VL + + ++E L+PF+D Q I VD I VDW+ Sbjct: 122 DALGTVRGLIDNGAHPVLQVAVEDSE-NKVRELLIPFVD-QFIDDVDREGGKITVDWE 177 >UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrobacter RepID=RIMM_PSYCK Length = 177 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 104/182 (57%), Gaps = 5/182 (2%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MS A A + +G++ YGI+GWL VFS T+D +IFD +PW+++ A + + + Sbjct: 1 MSSAPNASA---LMKIGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTV 57 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 ++W+ ++ + + + DR+ A + + V+ LP+ E +YYW DL+ +V+ + Sbjct: 58 KAWREQGTGIVAQFEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQ 117 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG + +M ETG++ ++ + A D+ +ERL+P+ V+K VDLT +++ V W Sbjct: 118 DEYLGDITEMFETGAHAIMRVAAT-TDSLDKEERLIPWHKQTVVK-VDLTEKTVLVAWPS 175 Query: 181 GF 182 + Sbjct: 176 DY 177 >UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisseriaceae RepID=RIMM_NEIG1 Length = 169 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 7/167 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + +G + +GI+GWL++ ++TE ++S+ DY W + K G+ V LE+ K N ++ Sbjct: 6 NRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVVNGELQ 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K +G+DDRD+A L I + EE +YYW DL+G VV + LGKV ++M Sbjct: 66 VKFEGIDDRDSAFSLRGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDDTVLGKVSNLM 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ETG+NDVL+I + L+PF+ Q I+ VD +++I DW Sbjct: 126 ETGANDVLMIDGEHG------QILIPFV-SQYIETVDTGSKTITADW 165 >UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkholderiaceae RepID=RIMM_BURPP Length = 248 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 7/188 (3%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDA---ESIFDYQPWFIQKAGQWQQ 57 M + P D + +G + +YG++GW++V + + +++ + W++ K + + Sbjct: 62 MRMETVESWPADAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERKS 121 Query: 58 VQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 K H+ ++ L GV DRD A L + + S+ P L ++YW DL+G VV Sbjct: 122 APSLQAKMHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPALGADEFYWVDLLGLDVV 181 Query: 118 TTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGI---KERLVPFLDGQVIKKVDLTTRSI 174 G +LGKV DM++ G++ VL I+ D G ERL+PF+ G +K VD + I Sbjct: 182 NVAGVNLGKVADMIDNGAHSVLRIEYPDTDKSGKPVIGERLIPFV-GVFVKTVDQAAKQI 240 Query: 175 EVDWDPGF 182 VDW+ + Sbjct: 241 TVDWEADY 248 >UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinomycetales RepID=D1AB16_THECD Length = 172 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D +V+G++G +G+RG + V T+D ++ F + +E + H + Sbjct: 3 DDQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ GVDDR AA L +VVD+ LP LE+ +++ +L+G VTT+G +G V D Sbjct: 63 LLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTVRD 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ + D+LVI+ E LVPF+ ++ +VD+ I +D PG Sbjct: 123 ILHY-AQDLLVIRRETG-----GEALVPFV-AALVPEVDVAGGRIVIDPPPGL 168 >UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFN2_BREBN Length = 175 Score = 182 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G+RG +RV +T+ + F F + ++++ S + H I+ Sbjct: 12 VGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLSEPLKLKIASRRPHKNFEIV 71 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 G + + E+ + + L +LEE ++Y L+GC VVT EG +LGK+VD+M+ Sbjct: 72 SFHGFEHINDIEKYKGGELKIPAEALMELEEDEFYIHQLVGCVVVTDEGEELGKIVDVMQ 131 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+K E L+P++D + IK+VD+T + + G Sbjct: 132 PGANDVWVVKGKRG------EILLPYID-ECIKEVDITNKRVVCHLMEGL 174 >UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YSV4_9GAMM Length = 173 Score = 182 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 65/172 (37%), Positives = 108/172 (62%), Gaps = 5/172 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+G++ + +G+RGW++V + TE E++ YQPW I + +Q++ W+ H + ++ Sbjct: 4 LVVGRITAVFGVRGWVKVHAYTEKVETLCSYQPWLIDTPAGVKPIQIDEWRRHGESLVAH 63 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGY--DLGKVVDM 130 + G+DDRD A +I+V+ +LP+L+ DYYW L G VV+ EG LG V + Sbjct: 64 IAGIDDRDIAQTWCGNDILVEKDKLPELKSDDYYWHQLEGLSVVSHYEGEQIRLGTVKSL 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDVLVIK + ++ +ERL+P++D Q + + + R I+V WDP F Sbjct: 124 LETGANDVLVIKGD-AESIDREERLIPYVD-QFVTSISMVDRRIDVIWDPAF 173 >UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococcaceae RepID=RIMM_PELTS Length = 170 Score = 182 bits (462), Expect = 6e-45, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +GK+ + G RG +RV T+ E + + G + HH +IIK Sbjct: 6 IRIGKILKTQGNRGAVRVLPLTDYPERFKNMSRVQVSLKGFRTFFTVGEVYHHKNFIIIK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 K ++ AA L + V +L L E +Y D++G +V T G +LG+V D+++T Sbjct: 66 FKEIESMAAAEKLKGAFLEVGRDELVPLPEDRFYIFDIIGLKVYDTGGRNLGRVTDVLQT 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ G K L+P L QV+K V+LT + V+ G Sbjct: 126 GANDVYVVDT------GGKPLLIPALK-QVVKSVNLTEGKMVVELPEGL 167 >UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHP4_9GAMM Length = 198 Score = 182 bits (462), Expect = 7e-45, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 23/193 (11%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-----WQQVQLESWKHH 66 + +V+GK+ + YG++GW++V S T+ E+I YQ +++ + WQ + + K+H Sbjct: 7 ELVVIGKITAVYGVKGWVKVHSFTDPMENILGYQSYYLSGGNKGTGESWQSLSFDEVKYH 66 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE------ 120 + ++ ++GV DR+ A +I + S++P+L+ D+YW+DL+G +V + Sbjct: 67 GKGLVALIEGVSDREVARGYCQRDIAIPISEMPELDTDDFYWRDLIGLKVFSVNIADEHD 126 Query: 121 -----------GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 G LG V MMETG+NDVL +K + +ERL+P+L QV+K VD+ Sbjct: 127 ADTEQIDPVGHGVLLGAVHQMMETGANDVLAVK-QCDGSIDDQERLIPWLPDQVVKHVDI 185 Query: 170 TTRSIEVDWDPGF 182 I+VDW F Sbjct: 186 EAGFIQVDWPVDF 198 >UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphaproteobacteria RepID=RIMM_BRASO Length = 199 Score = 181 bits (461), Expect = 7e-45, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I + ++G+++G+RG +R+++ TED ++ Y P + + ++ + ++ Sbjct: 5 LICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGS--RSFEVTKAREAKDHLVA 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KG+ DR+AA L E+ V +LP+ ++ +YY DL+G TT G LG+V+ + Sbjct: 63 SFKGITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHN 122 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G+ D++ I ++PF + V+ VDL + ++ Sbjct: 123 FGAGDIIEIAPPSGST-----LMLPFTNA-VVPTVDLAGGRVIIELPD 164 >UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GME9_9NEIS Length = 169 Score = 181 bits (461), Expect = 8e-45, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 7/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G + ++GI+GW++V S+TE +S+ DY W + K + ++ES K ++ +K Sbjct: 8 VAMGYIKGAFGIKGWIKVQSNTEYTDSLLDYPQWRLSKGKEHILAEVESGKMAGDELQVK 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L + DRDAA LL I V Q EEG+YYW DL+G V EG LG+V+++MET Sbjct: 68 LAHIHDRDAAALLRGYTIEVPREQFEPTEEGEYYWADLVGMAVKNREGIHLGEVINLMET 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G++D+L+++ E+L+PF++ Q I VD R I DW Sbjct: 128 GAHDILIVRGEHG------EKLIPFVE-QFIDNVDNENRQITCDW 165 >UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonifex degensii KC4 RepID=C9R885_AMMDK Length = 169 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G++ + +G RG L+V T+ E + + G+ ++ + H + ++ Sbjct: 4 DFITVGEIVAPHGYRGALKVLPLTDFPERFLGMKEAMVLLKGRRTTYTVKRARLHGKFVL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++L GV+ + A L + V ++ L G YY DL+G +V T EG LGK+ ++ Sbjct: 64 LELVGVERMEEAEALRGGLVQVPREEVYPLPPGHYYIFDLIGMEVFTEEGAFLGKIEAVL 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T +NDV +++ KE L+P L V+ VD+ R + V G Sbjct: 124 STRANDVFSVRSPEG-----KEILIPALK-TVVCSVDVPGRKMTVKLPEGL 168 >UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R649_9RHOB Length = 185 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 89/177 (50%), Gaps = 9/177 (5%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 A P D I++ ++G+++GIRG +RV +D S DY ++ ++ +++ + Sbjct: 2 ANKPEDRILMAQIGAAHGIRGEVRVKPFGDDPLSFGDYGK--LESEDGSRKFKVKRARVQ 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLG 125 ++ K +GV+DR+ A L ++ + +LP+ E E ++Y DL+G + + +G Sbjct: 60 KNVVVTKFEGVNDRNEAEALNGLKLYIPRERLPETEDEDEFYHSDLIGLKALDENKEQIG 119 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V+ +++ G+ D++ I K L PF V+ ++L +EV GF Sbjct: 120 TVLALLDFGAGDLIEIAPKSG-----KSLLFPFTKA-VVPVINLKEGFVEVHAPEGF 170 >UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QVP2_9RHOB Length = 186 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 8/176 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + +++ K+G+++G+RG +RV +D S DY + Q ++ S + Sbjct: 2 SSKETQKVLMAKIGAAHGVRGEVRVKPFGDDPLSFTDYGVLTTKDGKQ--SFEVVSARVQ 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ K K V DR+ A L E+ +D QLP+ +E ++Y+ DL G V +G LGK Sbjct: 60 KTVVVTKFKEVTDRNRAEELNGTELYIDRDQLPETDEDEFYYSDLNGLDVKDPQGELLGK 119 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +V + + G+ D+ I+ K +PF + + ++L + + D + Sbjct: 120 IVAVQDFGAGDLFEIRPKRG-----KTFYIPFTK-EFVPTINLDSGFVVADLPEDY 169 >UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWB1_ALIAD Length = 177 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 9/171 (5%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQ--QVQLESWKHHNQDMI 71 +G + +G+RG +RV+ T+ E F +++ G ++++ S + H I Sbjct: 6 TVGVVTKPHGLRGEVRVYPRTDFPEERFSPGSRLWLRPPGSEPVAELEVRSGRQHQNLWI 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + KG E+ V L L EG YY+ L+G +V++ EG LG + ++ Sbjct: 66 VGFKGYHAISDVESWRGYELCVPEDMLHPLPEGAYYYHQLVGLEVISDEGEPLGVLAEVW 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V++ G + L+P + VI VDL R + V PG Sbjct: 126 TPGANDVYVVRKP-----GQPDLLLPAIR-DVILSVDLEARRMTVHLLPGL 170 >UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera sp. MZ1T RepID=C4KAF6_THASP Length = 172 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-----QKAGQWQQVQLESWKHHN 67 IVLG++ + +G++GW+++ +D S + W++ A W+Q L + + H Sbjct: 1 MIVLGRIVAPFGVQGWIKIHPFGDDPASWRNMSHWWLCSDDDAPAEAWKQYTLSACRPHG 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 + ++ L + DR AA + I LP+ EG+YYW DL+G V G +G V Sbjct: 61 KGLVAALAEISDRGAAEAIDGFYIAAPREALPKPAEGEYYWGDLVGLAVENEAGEAMGTV 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ TG++DVL + + ERL+PF+ + VDL TR I V W Sbjct: 121 AGLISTGAHDVL--QVREGEGEEGVERLIPFV-AAYVLDVDLATRRIRVAW 168 >UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomonas intermedia K12 RepID=C7I5F5_THIIN Length = 180 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 5/177 (2%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG---QWQQVQLESW 63 P D ++G + ++G+RGW++V A ++ + W++ + G + + + Sbjct: 1 MAIPDDLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H ++ L+G +DR A L +I V + P +EG++YW DL+GC+V + EG D Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPPDEGEFYWADLIGCEVRSPEGAD 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAF-GIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG+V+ +ME+ ++ VL ++ A +ERL+PF++ ++ VDL ++I WD Sbjct: 121 LGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIV-SVDLPAKTIIALWD 176 >UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickettsiella grylli RepID=A8PP11_9COXI Length = 170 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 10/173 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQD 69 I++G +G YGI GW+++ S TE ++ DY+PW+++ G+ V ++ H Q Sbjct: 5 KILVGSIGKPYGINGWVKINSYTEPFTNLIDYRPWYLEAPGKRSSPILVGVKKCCLHGQQ 64 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ + ++A TN +I V+ Q L G+YYW DL G +V E LG + Sbjct: 65 LLALFENSTTPESARFYTNYKIYVERDQFFPLHAGEYYWADLEGLKVYNRENIYLGIIQI 124 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TG+NDVLVI K LVPFL Q I+ +DL T+ + VDWD F Sbjct: 125 IFATGANDVLVI-------SDKKRYLVPFLFNQTIQSIDLKTKIMIVDWDANF 170 >UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXB2_9GAMM Length = 185 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 109/183 (59%), Gaps = 7/183 (3%) Query: 1 MSKQLT----AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ 56 M+KQ T +A +G++ YGI GWL VFS TED E+IFD QPW I A + Sbjct: 1 MAKQPTDLHTNEANASLFKIGELKKPYGIHGWLWVFSFTEDREAIFDMQPWVINTAMGQK 60 Query: 57 QVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 + +++W+ + +++L V DR+ A + + + + + L +L E +YYW DL+G V Sbjct: 61 TLTVKNWRQQGKGYVVQLNEVPDRNIAETMFSVSLWAEKNNLSELAENEYYWSDLIGLTV 120 Query: 117 VTT-EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 ++ E LG+V ++ ETG++ ++V++ D+ +ERL+P+ Q + +V+LT +++ Sbjct: 121 ISQSENVILGRVKELFETGAHAIMVVE-PTADSVDGEERLIPW-HKQTVGEVNLTEQTLM 178 Query: 176 VDW 178 VDW Sbjct: 179 VDW 181 >UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FNP4_DESAA Length = 169 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D + +G++ +GIRG + + S ++ + ++ G+ Q+ LES + + + Sbjct: 5 DFVEVGQVAGVHGIRGAVLLRSFADNPDIFAKGGKLLLKGPGENIQEYILESSRPYKGKL 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + +L+GV DR A L I+V LP+LE +YYW DL+G +V +G LG + + Sbjct: 65 LAELQGVSDRSGAEALKGRMILVHRDALPELEPDEYYWFDLIGMEVAAPDGSRLGVLDAI 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDV VIK G KE L P L V+ +DL + VD G Sbjct: 125 IETGANDVYVIK------DGEKEILAPAL-PWVVLSIDLEAGVMIVDLPEGL 169 >UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMM_HELMI Length = 171 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 7/172 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA--GQWQQVQLESWKHHNQDM 70 + +G++ ++ G+RG +R++ TE + + F++ G + + + S + + Sbjct: 4 RVRVGQIVNTQGVRGQVRLWPLTEKPSRFNEIKRVFVEAPPQGAPEVLTITSAHPLKKLV 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+ + + D A L C + + ++P E YY L G V T G LG++ ++ Sbjct: 64 IVSFQEISDMTQAERLKGCYLTIPVEEVPAPEPDSYYHFQLEGLSVFTEAGERLGQIEEI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETGSNDV V++ A E L+P L V+ KVDL ++ V G Sbjct: 124 LETGSNDVYVVR----QASPPGEVLIPALKS-VVLKVDLAAGTMTVRLPDGL 170 >UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphylococcus RepID=RIMM_STAS1 Length = 168 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 94/173 (54%), Gaps = 11/173 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQDM 70 + +GK+ +++GI+G ++V S+++ E+ F I +K + + + S++ H Sbjct: 2 KVEIGKIVNTHGIKGEIKVKSNSDFTETRFQPGELVIIERKNKEPLEFTIASYRMHKGLH 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSS-QLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ +G+++ + L I+ + + +L E ++Y+ D++GC V + +G+V + Sbjct: 62 MLTFEGINNINDIEYLKGETIMQERDHEEIELGEHEFYYSDIIGCTVFDDDDTPIGRVTE 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ETG+NDV V+K G KE L+P++ V+K +D+ R I++ G Sbjct: 122 IFETGANDVWVVK-------GDKEYLIPYI-ADVVKDIDVEGRRIQITPMEGL 166 >UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobacterales RepID=RIMM_PARDP Length = 167 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + +G + ++G+RG +R+ S T I Y P + + + + + + Sbjct: 3 ERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGN--RSFTIRLTRPVTGGLG 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +L GV+ R+ A L + D +LP L + ++Y DL+G V T G LGKV + Sbjct: 61 ARLSGVETREQAEALKGVTLWADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIY 120 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D+L I + L+PF + VDL I D Sbjct: 121 DHGAGDILEIFGPGRRQV----LLLPFTRA-FVPTVDLAAGRIVADPPE 164 >UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacillales RepID=RIMM_BACWK Length = 171 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 92/170 (54%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G++G +RV S T+ E + + +K + V++ S + H ++ Sbjct: 7 VGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEKGTDYLTVKVTSHRQHKTFDLL 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 L+G ++ D L I V QL +L EG+YY+ +++GC VVT EG LG + +++ Sbjct: 67 TLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEILS 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV VIK ++ L+P++D V+ +V++ + + + G Sbjct: 127 PGANDVWVIKRPKG-----QDLLIPYID-DVVLQVNIENKLVTIHVMEGL 170 >UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta proteobacterium KB13 RepID=B6BW84_9PROT Length = 165 Score = 178 bits (452), Expect = 9e-44, Method: Composition-based stats. Identities = 68/173 (39%), Positives = 109/173 (63%), Gaps = 10/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQD 69 + +++GK+ S+YGI+GW+++ TE A++ Y+ F+ + + W +V+++ K QD Sbjct: 2 ENLVIIGKIISAYGIKGWVKIRPFTETAKNFIQYKTQFLSRNQKDWNRVEIKEIKIQGQD 61 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I + G+ DRD + + + QLPQL E ++YW DL+G +V+ + DLGKVV Sbjct: 62 VIADI-GLTDRDQSISHKGYFLAIARDQLPQLPEDEFYWDDLIGLKVIDVDREDLGKVVG 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+NDVLV+ G +ERL+P++ QVIKKVD + IEVDWD F Sbjct: 121 LIETGANDVLVV-------SGDRERLIPYI-PQVIKKVDTHNQLIEVDWDKEF 165 >UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria RepID=RIMM_RUTMC Length = 189 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 8/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +++G++ S +G++GW+++FS T E+I YQPW I WQ +++ + + Sbjct: 26 DKRLLIGQINSLFGVQGWVKIFSHTHPRENILFYQPWHINVDANWQTLEIIQGCVQAKTI 85 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + ++K V D++ A ++ + SQLPQL+ G+YYW DL+G +V+ LGKV ++ Sbjct: 86 VAQIKDVFDKEQARAYIGIDLYIKKSQLPQLKSGEYYWDDLIGLEVINKAKIILGKVSNL 145 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TGSN+VLVI G +E VP++ +IK VD+ + I VDWD F Sbjct: 146 VDTGSNNVLVI-------NGEREHWVPYISPFLIK-VDIDNQIILVDWDENF 189 >UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionella RepID=RIMM_LEGPA Length = 169 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +++G+ G +GI+G++ V S T+ A++I Y W + QWQ ++L + + ++ +I + Sbjct: 8 VIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQ 67 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 ++G +R+ + LTN +I V SQL L G+YYW L+G V+ ++G GKVV++M T Sbjct: 68 IEGYPERELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPT 127 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDVLV++ G K L+P+L GQ + +D + + I VDWD F Sbjct: 128 GSNDVLVVE-------GEKRHLIPYLPGQFVINIDESQQVITVDWDMNF 169 >UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillonellaceae RepID=C9KKT7_9FIRM Length = 180 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 A D + +GK+G+++GI G +R+ T+ E D + + + + +ES K+H Sbjct: 12 NAAKDRVTIGKVGAAHGIHGEMRIIPLTDFTERFADMKEVMVGD----ELLHIESCKYHK 67 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 Q +++K + R+ A LT + VD S+ LEEG++Y D++G V G LG V Sbjct: 68 QFILLKFREYPVREDAMRLTGRLLTVDRSEAVPLEEGEFYTFDIIGLTVYDETGNTLGTV 127 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +++ TGSNDV + +E L+P L V+K +D+ + VD Sbjct: 128 ENVLRTGSNDVYQARRP-----DGRELLIPALKA-VVKVIDVAGGRMVVDLPE 174 >UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostridia RepID=RIMM_THEP3 Length = 167 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQD 69 D +GK+ S++GI+G ++V+ T E +D + +I + + +E K ++ Sbjct: 2 ADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISKG 61 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + +KLKG+D R A L + VDS +LEE +Y+ KDL+G +V T EG LG +V+ Sbjct: 62 VCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLVE 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++TG+NDV VIK +E L+P + +V+KKVD+ + + V G Sbjct: 122 VLKTGANDVYVIKTEE------REILIPAIK-EVVKKVDVDNKVMVVHLLEGL 167 >UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=3 Tax=rosids RepID=D1IBQ5_VITVI Length = 665 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 22/198 (11%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQK----AGQWQQVQL 60 T++ + + +G + S +G++G +RV +T+ E + ++++ ++V+L Sbjct: 70 TSKVESEFVEVGYISSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVEL 129 Query: 61 ESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 + H + I+K G+D + A L ++V P+LEEG++Y +DL+G +V Sbjct: 130 VEGRGHPGQKTWILKFGGIDTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVTL 189 Query: 119 TE-GYDLGKVVDMMETGSNDVL------VIKANLKDAFGIKE-------RLVPFLDGQVI 164 E G +G VV++ TG+ND+L +K E VPF++ ++ Sbjct: 190 KETGEPVGTVVNVFSTGANDLLQVMLDPSVKTPDHTGNPKSETGVSGPLVWVPFVEA-IV 248 Query: 165 KKVDLTTRSIEVDWDPGF 182 VD+ R +++ G Sbjct: 249 PNVDMNKREMQITPPKGL 266 >UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHL9_9FIRM Length = 169 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 5/169 (2%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +GK+ +++G++G ++V +++ E I + F++K G + H + +I+ Sbjct: 5 VAIGKVVTTHGVKGGMKVQPLSDNPERIKELIRVFVEKDGHSAARDVVEAFVHGRAWVIR 64 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L+G+D DAA L + + S+ L E YY ++G V T +G LG +++++ET Sbjct: 65 LEGIDSCDAARELVGAMLTIPISERLPLPENSYYLDQIIGLDVYTVDGTYLGSIINVLET 124 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V++ + ++ L+P L V+K +DL T +EVD G Sbjct: 125 GSNDVYVVE----NKADGRQVLIPALKA-VVKSIDLDTGRMEVDPPEGL 168 >UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCM3_THET1 Length = 179 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 P + +++G++ S +G+RG ++V T++ E + ++ A ++ S + Sbjct: 10 PHPPDNYVIVGRILSPHGVRGEVKVEPITDNPERFKQLRQVYVGDALH----KVVSVRVL 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++++ +G++ + A L+ + + Q+ L E +Y DL G +VV+T G LG Sbjct: 66 PKFVLVRFEGMESPEQAKALSGMYLYIPKEQVMPLPEDTFYHFDLQGMEVVSTSGEPLGT 125 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ +NDV V+ E L+P + V+K VDL R + V+ PG Sbjct: 126 LREILIREANDVFVVDHPRG------EILIPAIK-DVVKDVDLENRRLVVELIPGL 174 >UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosomonadaceae RepID=RIMM_NITMU Length = 168 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 10/170 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMI 71 +++G++ Y + GW++VF TE + + DY W++ + G+W + ++ + H ++ Sbjct: 1 MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GD--YYWKDLMGCQVVTTEGYDLGKVV 128 L+ DRDAA L +I + LP L E G+ YYW DL+G V+ +G LGKV Sbjct: 61 ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ETG+NDVL ++ + ERL+PF+D QVI KVDL I VDW Sbjct: 121 GLLETGANDVLQVQNPEE-----TERLIPFID-QVIIKVDLAAGRITVDW 164 >UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5A1_DESAS Length = 173 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 5/178 (2%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + ++ + I +G++ ++ G RG++RV T+ E + + G ++ + E Sbjct: 1 MDKESSKNYITIGEIVNTQGNRGYVRVLPLTDFPERFKGMKQVSVYTKGAYRLMHPEDVY 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +H + ++IK K + D AA L + V+ + L G YY +LMG V +EG Sbjct: 61 NHKKFVVIKFKEIPDMTAAESLKGGLLQVEPKDIVPLPRGSYYVFNLMGMNVYNSEGRHY 120 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G++ D++ TG+NDV ++ + ++ L+P L QV+K +D+ + + VD G Sbjct: 121 GRIKDILTTGANDVYIVWYEAE----KRDLLIPALK-QVVKLIDVENKKMVVDLPEGL 173 >UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phyllobacteriaceae RepID=RIMM_MESSB Length = 212 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 10/178 (5%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M+K +P+ L +G+++GI+G +RV + TED ++ Y P + + +Q+ Sbjct: 5 MAKPKAPAGIENPVQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMVDG---RVLQV 61 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTT 119 + + + +I++ KGVD R+AA L + VD S LP+ LEE ++Y+ DL+G V+ Sbjct: 62 AAIRPAKEVVIVRFKGVDGRNAAEALNGEALFVDRSALPEKLEEEEFYYADLIGMAVLDE 121 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G +LG+VV + G+ D+L + N ++PF + +DL+ +I +D Sbjct: 122 KGENLGRVVAVHNFGAGDLLEFRENSGPT-----VIIPFTRDA-VPDIDLSNNTIRID 173 >UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrhizobiaceae RepID=RIMM_RHOP5 Length = 176 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 8/167 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I + ++G+ +G+RG L+++ TED ++ DY P Q ++ ++E+ + ++ Sbjct: 5 RICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGS--RRFEVETAREAKDHLVA 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 LKGV RD A L E+ +D QLP+ +EG+YY DL+G VT G LGKV + Sbjct: 63 TLKGVASRDDAVRLNGIELYIDRDQLPETDEGEYYHADLIGLAAVTAAGEPLGKVAAIHN 122 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G+ D++ I L+PF + V+ VDL + ++ Sbjct: 123 FGAGDIIEIAPPSGPT-----LLLPFTNA-VVPTVDLEGGRVVIEMP 163 >UniRef50_Q9FHG3 Genomic DNA, chromosome 5, TAC clone:K11I1 n=2 Tax=Arabidopsis thaliana RepID=Q9FHG3_ARATH Length = 653 Score = 175 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 96/195 (49%), Gaps = 15/195 (7%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKA----GQWQ 56 + + ++ + +D + +G + +G++G + + +T+ + ++++ + Sbjct: 69 AVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQQLLGQDKID 128 Query: 57 QVQLESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGC 114 +V+L + H + I+K +G+DD D L ++ + P+L+EG++Y +DL+G Sbjct: 129 EVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDEGEFYSRDLVGM 188 Query: 115 QVVTTE-GYDLGKVVDMMETGSNDVLVI------KANLKDAFGIKERLVPFLDGQVIKKV 167 +V+ E G +G V ++ + G ND+L + + +A + +PF+D ++ V Sbjct: 189 RVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTNQLVWIPFVDA-IVPDV 247 Query: 168 DLTTRSIEVDWDPGF 182 DL + + + G Sbjct: 248 DLERKEMYITPPKGL 262 >UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera aphidicola RepID=RIMM_BUCAI Length = 176 Score = 175 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 111/176 (63%), Gaps = 2/176 (1%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 ++ P+ P+++GK+G SYGI GW+ +FS TE+ E IF+Y PWF K W ++Q+++W Sbjct: 3 NISINKPIQPLLIGKVGKSYGILGWINIFSFTEEQEKIFNYLPWFFFKEKNWTRIQIKNW 62 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K + + I+ +K + DR + TN +I++ LP L++ DYYW D++ +V + + Sbjct: 63 KKYKNNFIVHIKDISDRSVVSQFTNADIIISKHTLPALKKNDYYWNDIINYKVFNIDQHY 122 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG V++++ T +ND+L++K LK K L+PF+D ++IK V+ + I V WD Sbjct: 123 LGTVINLIRTRNNDILIVKNKLK--IHQKNILIPFIDNKIIKNVNTDKKFILVQWD 176 >UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RIMM_BUCBP Length = 180 Score = 175 bits (445), Expect = 6e-43, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 106/171 (61%), Gaps = 1/171 (0%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + + K G+++GI GW+RVFS TE E+IFDY PWFI+K + ++ + WK + ++ Sbjct: 9 HLTIAKFGAAHGILGWIRVFSYTEKKENIFDYVPWFIKKEQKIIKILPKYWKILKKTFLV 68 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K+ V++R A LTN +I+++ LP+L +YYWKD++ C V T LG+V +++ Sbjct: 69 KINDVNNRSMAQKLTNYDILINQKTLPKLNNNEYYWKDIVDCTVFDTNFIKLGRVSELIR 128 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV-DWDPGF 182 T SND+LV+KA+ + L+PFL Q+I +V++ + I + +W F Sbjct: 129 TPSNDILVVKASNIKNISQNDMLIPFLHPQIISEVNINNKKIVIKNWKQTF 179 >UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostridia RepID=RIMM_CLOTH Length = 174 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--AGQWQQVQLESWKHHNQDMI 71 + +GK+ +++GI+G ++ T++ + ++ K + + + + S KHH +I Sbjct: 5 LQVGKIVNTHGIKGEVKAIPLTDNPRRFNKLKWAYVSKEISNEMPKFDIVSVKHHKNFVI 64 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K G+DD +AA L +++D +L + ++ DL+G V TE LG + D++ Sbjct: 65 LKFSGIDDMNAAEKLKEHFVIIDRKDAVKLPKDTFFICDLIGMNVFDTEEKKLGVLTDVL 124 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TGSNDV V+K++ KE L+P L V+KKV + VD G Sbjct: 125 STGSNDVYVVKSDN-----NKEILIPALKS-VVKKVCFEDNKMVVDLPQGL 169 >UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillales RepID=RIMM_EXISA Length = 172 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 98/174 (56%), Gaps = 9/174 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQD 69 +D + +GK+ +++G++G +++ ++T+ E F F+ G Q++ + +++ H Q Sbjct: 1 MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ KG D+ + ++ V + + L+E ++Y+ +++GC+ V +G +G V D Sbjct: 61 HLVTFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAV-VDGEVIGVVDD 119 Query: 130 MMET-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ET G+NDV VIK G + L+P+++ V++++D+ + + + PG Sbjct: 120 IFETNGANDVWVIKRP-----GKSDALIPYIES-VVQEIDVDAKRVVITPIPGM 167 >UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacilli RepID=RIMM_GEOTN Length = 175 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++GIRG +RV S T+ E + F + + +V ++S + H ++ Sbjct: 10 VGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSHRVHKSFDLL 69 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G D + + V SQL +L EG+YY+ +++ C VVT G +GKV +++ Sbjct: 70 SFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGETIGKVKEILT 129 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V++ + L+P++D V+ VD + I + G Sbjct: 130 PGANDVWVVRRQ-----DGTDALIPYID-DVVMHVDPERKIIIIRPMEGL 173 >UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Selenomonas RepID=C4V0K2_9FIRM Length = 169 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 10/177 (5%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 +L+ P + IV+G++G+ +G+RG LR+ T+ E + + + + + Sbjct: 3 RLSQSVPDERIVIGRIGAPHGVRGDLRIIPLTDFPERFAQMREVMAGD----ELLHITAV 58 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K +++++ + D R+ A LT + V ++ L+EG+YY D++G V +G + Sbjct: 59 KPQGRNILMHFREYDVRETAQRLTGRVLTVPRAEAAPLDEGEYYVFDIVGLTVRDEDGNE 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG V D++ TGSNDV ++ E LVP L V++ +D + V Sbjct: 119 LGTVTDVLRTGSNDVYAVRDAEGH-----ELLVPALR-TVVQNIDTAGGCMTVRLPE 169 >UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbiobacterium thermophilum RepID=RIMM_SYMTH Length = 174 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 9/179 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + Q+ D I +G++ + +G+RG +RV+ +T+ E + I + + + Sbjct: 1 MAGQSRPDLIRIGQVTAPHGVRGAVRVYPTTDFPERFVTLKRVMIDGPDRAVGARFRGF- 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +I++L+G+ DR+ A L +++V ++ L EG YY D++G +VV +G L Sbjct: 60 -VKNLVILELEGITDRNQAERLRGADLLVPREEVHPLPEGYYYDFDIIGIEVVDPDGRQL 118 Query: 125 GKVVDMMET-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+VV++ T +D+ V++ K LVP + +K++DL T + +D PG Sbjct: 119 GRVVEVDHTSPVHDLYVVET-----APGKRYLVPAVRR-FVKEIDLETGRMVIDPIPGL 171 >UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactobacillus RepID=RIMM_LACGA Length = 173 Score = 172 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 8/170 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +GK+ S +G++G ++V ++T+ E + + FI+ + Q+Q++ ++ + H Q ++K Sbjct: 6 EVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQFYLVK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMME 132 + +D D A + E+ V + +L EG YY+KD++ C V E G LG + ++ Sbjct: 66 FEEIDGIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEKLGVLANIET 125 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ND+ IK K +P ++ V+ KVDL + IEV G Sbjct: 126 PGANDIWEIKPEHG-----KSFWIPNIES-VVNKVDLANKRIEVTLLEGL 169 >UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacter RepID=RIMM_GEOMG Length = 173 Score = 172 bits (437), Expect = 4e-42, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQDM 70 D ++LGK+ +++GIRG L V + + +I Q ++ ++ +++ H + Sbjct: 6 DLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRV 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ LKG + + L E+ Q P L+EG++YW DL+G V T+EG LG++ ++ Sbjct: 66 LLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEI 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TGSNDV V++ G +E L+P L+ V+ VDL + V G Sbjct: 126 IATGSNDVYVVR------DGEREYLIPALEDIVVG-VDLDKGIMTVSPTEGL 170 >UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMM_MOOTA Length = 176 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 12/177 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ------KAGQWQQVQLESWKH 65 + I +GK+ ++GIRG ++VF T+ E ++ + G+ V + S + Sbjct: 4 ERIGVGKIIGTHGIRGEVKVFPLTDFPERFRPGTRLILEQEGADGREGRTFPVTVISVRP 63 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 ++I+KL ++D D A + + V+ ++ L EG YY L+G +V TT G LG Sbjct: 64 GKGNLILKLAEINDADQAGAVRGATLKVEPWEVEPLPEGHYYIYQLLGSRVYTTGGEFLG 123 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D++ TG+NDV V++ E L+P L V+++VDL + I V+ PG Sbjct: 124 ILRDILATGANDVYVVRNE-----DAGEILIPALK-TVVRQVDLARKEIRVELPPGL 174 >UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U5V9_9DELT Length = 199 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 7/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ-QVQLESWKHHNQDMI 71 I++G + +GIRG + + S + ++Q G+ + SW+ H ++ Sbjct: 6 LILVGGVVRPHGIRGEICIKSHADSPSLFGLVAALYLQDKGKPPIPHAVRSWREHKGMVL 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L GVDDRD A L E++V + LP+L+EG++Y LMGC+V +G D+G + Sbjct: 66 LTLDGVDDRDKAEALRGREVLVREADLPELDEGEHYLYQLMGCRVTLADGTDVGVLEHFF 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG D VI E ++P + + + VDL I +D G Sbjct: 126 ETGEQDTWVIINEAG-----TEIMLPAV-PEFVLDVDLDAGVIVIDPPAGL 170 >UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E31 Length = 167 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQD 69 D +++GK+ +GI+GWL+V TE+ ++ +Y W I K W ++E+ ++ Sbjct: 3 DDVVIMGKIVGPHGIKGWLKVHPFTEEIGTLSNYPQWLISKDEKHWVGHKVETATVKDKT 62 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++KL G+DDR+ ++ + + + +LP+L+ YYW DL+G V GY G + Sbjct: 63 LLVKLVGIDDRNGSDSVNKNMVGILKEELPKLDADTYYWSDLIGLDVQNEAGYYFGSIQT 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 MMETGSNDV+VIK G +E L+P+L VI KVDL + + VDWD + Sbjct: 123 MMETGSNDVMVIK-------GEREFLIPYL-PDVIIKVDLEAKKVLVDWDENY 167 >UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodobacteraceae RepID=B7RJU4_9RHOB Length = 194 Score = 172 bits (436), Expect = 7e-42, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 7/179 (3%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES 62 +Q A A D I +G + SYG+RG LR+ S E I +Y P + + + L Sbjct: 7 RQFGAFAMSDKIPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALAL-- 64 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + + ++ V ++ A+ L + D +QLP L + ++Y DL+G +V T G Sbjct: 65 VRPIKNGFVARITDVTSKEEADALRGTLLYADRAQLPSLPDDEFYHADLLGLEVYDTGGT 124 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +GKV + G++D+L + A +PF + VDL + I D G Sbjct: 125 LIGKVKTVQNHGADDLLETQLAGTSAT----VFLPFTKAA-VPTVDLASGRIIADPPDG 178 >UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetella RepID=RIMM_BORPD Length = 206 Score = 171 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 26/207 (12%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--------- 51 M A P D + LG++ +YG++GW++V + A+ + W++ + Sbjct: 1 MPDAAHAAVPGDLVELGRINGAYGVKGWVKVQPHSAQADVLRKASSWWLTRLVPEKARGV 60 Query: 52 -AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKD 110 A Q+ ++ + ++ +L G+ DRD A L + V SQ P + +YYW D Sbjct: 61 VASAPQEYKVVQARPQGASVVAQLAGITDRDQAEALRGLAVQVSRSQFPAAADDEYYWVD 120 Query: 111 LMGCQVVTT-EGYD--LGKVVDMMETGSNDVLVIKANLKDAFGIK------------ERL 155 L+GC T EG +G V ++ + G++ +L + A G + E L Sbjct: 121 LIGCAFYTNAEGEPARVGVVEEVFDNGAHAILRVVLQRAPAPGGEPEPRRDAKGRPLEML 180 Query: 156 VPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VPF+ G I VDL+ R I+ +W Sbjct: 181 VPFV-GAHILAVDLSARRIDSNWPTEL 206 >UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LE37_RHOVA Length = 193 Score = 171 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN-QD 69 D ++LG++G ++G+RG +++ + T E I Y P + A + + + + Sbjct: 3 EDKVLLGRIGGAHGLRGEVKIATFTAAPEDITAYGP--LSSADGTRTFVITGMRAASPGS 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEG-DYYWKDLMGCQVVTTEGYDLGKVV 128 +I +LKGV DR A L E+ V LP EE ++Y+ DL+G V+ EG +GKV+ Sbjct: 61 VIARLKGVADRTQAEALNGIELYVPRDSLPPPEEDDEFYYSDLIGLAAVSPEGAAVGKVI 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 + G+ D++ ++ + L+PF D + VDL + V Sbjct: 121 GVHNFGAGDLIEVRFGDERQP----VLIPF-DNAHVPHVDLGAGRVTV 163 >UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermomicrobia (class) RepID=B9KXC6_THERP Length = 184 Score = 171 bits (435), Expect = 9e-42, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 2 SKQLTAQAPV--DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ 59 ++Q + P + + +G++ ++G+RG +++ T E I + ++ + + Sbjct: 7 NRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYL--GEEPTPRR 64 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + ++L+G+ R+ A + + +D SQ L E +YY +++G QVV Sbjct: 65 LLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDE 124 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G LG+V++++ETG+NDV V++ E L+P + VI VDL + + V Sbjct: 125 AGNVLGRVIEILETGANDVYVVQRP-----DGSELLLPAIRS-VILAVDLEQQRLVVRPP 178 >UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFS4_9PROT Length = 170 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-QWQQVQLESWKHHNQDMI 71 IV+G + YG+ GW+++ TE + + +Y W++ +W +V + + + ++ Sbjct: 1 MIVMGHIIGPYGVHGWIKINPYTEHLDGLMEYPQWWLGDEKAEWNKVHVVNGHIYGTTLL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE---GDYYWKDLMGCQVVTTEGYDLGKVV 128 +KLK DR A L +I + LP L E YYW DL+ +V+ +G LG VV Sbjct: 61 VKLKEYSDRTQATKLKGIQIAIPRDWLPDLPENGVDGYYWTDLINAKVLNLKGEKLGTVV 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + ETG+NDVL I ++ KE L+P + Q + KVDL I VDWD Sbjct: 121 GLFETGANDVLRIVKMDQE---KKEILIPCI-SQYVMKVDLKNAQIIVDWD 167 >UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadecabacter antarcticus RepID=B5J1W5_9RHOB Length = 183 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 7/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D IV+G + S+G+ G +R+ S D E++ +Y P Q + ++ + Sbjct: 5 DDRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIMTIVIKG--QTKGSL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I ++ G+ ++ A+ L ++ QLP L + ++Y DL+G T G LG+V + Sbjct: 63 IARVDGITTKEEADGLRGMDLYAQRDQLPSLPDDEFYHTDLVGLMTYDTGGAKLGRVKAV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G++D+L I + LVPF + VDL + I VD G Sbjct: 123 QTNGADDLLEIISPSDKDT----VLVPFTKAN-VPTVDLASGRIVVDPPRGL 169 >UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMM_SYNWW Length = 172 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +GK+ +YG GWL+V T+ E + + + G+ ++ K HN Sbjct: 4 DKLVAIGKIAGTYGYAGWLKVIPLTDFPERFYKLDKVILNQGGKLGTFLVDGLKAHNNFY 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + K G+D + A N + +D S+L L EG +Y L G V E LG++ D+ Sbjct: 64 LFKFSGIDTVEVAQGFQNGILQIDESELYPLPEGYFYHFQLQGLSVYDEEKGLLGELTDI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDV V+ D+ E L+P + VI V L + +E+ PG Sbjct: 124 IETGANDVYVV-----DSPQYGEILIPAIK-DVILAVKLEEKRMEIKLLPGL 169 >UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD25_9FIRM Length = 179 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 7/182 (3%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQL 60 +KQ ++P+ +++GK+ +++GIRG L+V T+ E F + Q+V + Sbjct: 3 TKQRKGESPMKKMIIGKIVNTFGIRGELKVVPDTDFVEERFAPGQTLTVCLPEGDQEVTI 62 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + K H +++ L+GV + + CE+ VD LP L EG+YY+ L G + + + Sbjct: 63 AAVKEHKGLLLVLLEGVTNINQVERYKGCELAVDQEALPPLAEGEYYFFQLKGLKAIDPQ 122 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G +LG VV M + + +++ +K K+ L+P++D +K+VDL ++I +D Sbjct: 123 GNELGTVVRMEASAAQNLIRLKKP-----DGKQALIPYID-VFVKQVDLQAKTITLDLIE 176 Query: 181 GF 182 G Sbjct: 177 GL 178 >UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQK3_9FIRM Length = 168 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 I +G++ + +G+RG LRV TE + F+ + + S + H II Sbjct: 10 ITVGRIVAPHGVRGDLRVLPETERPAMFKKLKKLFLGG----RTYDVRSSRPHKNVYIIH 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L GV+DR+ A L + + ++LP+L EG+YY+ L+G VV+ G +G + +++ET Sbjct: 66 LAGVEDRNGAEPLVGTPVEIPVAELPKLPEGEYYYFQLIGLTVVSDTGDTVGTLTEIIET 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G+N+V +K KE +P + + V +++ V Sbjct: 126 GANNVYAVKTAEG-----KEIYLPAIPS-CVLSVQPEEKTMTVHLPE 166 >UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanobacteria RepID=RIMM_NOSP7 Length = 235 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--KAGQWQQVQ 59 + Q + + +GK+ S G+ G L+V+ ++ E ++ + Q +Q Sbjct: 45 NTQSPVPNLDNWLEIGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLHLDGTEPQPIQ 104 Query: 60 LESWKH--HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 L + ++ + +IKL GV++ D A L C+++V +S PQL E +Y+ DL+G +V Sbjct: 105 LLTGRYISNKNLYVIKLAGVENCDQAEALRGCKLMVPASDRPQLAEDEYHVLDLIGLEVF 164 Query: 118 TT-EGYDLGKVVDMMETGSNDVLVIK--ANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 G +G VVD++ G ND+L +K + K L+PF++ + VDL + I Sbjct: 165 MQASGELVGTVVDIIPAG-NDLLEVKLHPSFTTDKKQKTVLIPFVEA-IAPVVDLKSNRI 222 Query: 175 EVDWDPGF 182 E+ PG Sbjct: 223 EITPPPGL 230 >UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMM_NATTJ Length = 179 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 8/179 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI---QKAGQWQQVQLESW 63 +D + +GK+ ++G++G L+V S T+ + ++ Q +ES Sbjct: 1 MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESS 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 H I+K DD + + I + + PQLEE +YY+ + G VVT E Sbjct: 61 FTHKNMEIVKFSEWDDINQVEGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEF 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V ++ +TGSNDV + D K L+P L +V+KK+DL + + VD G Sbjct: 121 LGTVTNIYQTGSNDVYEVSKEQDD----KPILIPAL-YEVVKKIDLDEQIMIVDLPEGL 174 >UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillonellaceae RepID=D1BLK6_VEIPT Length = 165 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G + + +G+RG LR+ T+ E +I ++ + S + H Q ++ Sbjct: 5 DFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDG----KEYHVASARFHKQFVL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K + +R+ A L T I V L +L EG YY D++G +V T G LG V D++ Sbjct: 61 ASFKEIPNRNTAELFTKKAIQVRREDLVELPEGRYYIFDIIGLEVQDTMGNVLGTVTDVL 120 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+NDV V+ + G ++L ++ +V+K +++ + + VD Sbjct: 121 QPGANDVYVVSKD-----GEPDQLFAAIE-EVVKDINVKNKLMIVDPPE 163 >UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAZ1_9FIRM Length = 172 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 8/173 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQKAGQWQQVQLESWKHHNQD 69 D +G + S++G++G ++V+ +TE++ D Q + + G +++ + S ++ + Sbjct: 3 DYFQVGVITSTHGLKGEVKVYPTTEESRRFDDLCGQKVYAGRDGSLEELTIVSVRYFKKQ 62 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I++ ++ D + L +++ Q LEEG+YY DL+G +VV +G +LG + D Sbjct: 63 VILRFAEKNNIDEVSSLRQARLLISREQALPLEEGEYYVADLLGLKVVADDGRELGILTD 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ TG+NDV VI G + ++P + Q + K DL I V PG Sbjct: 123 VLTTGANDVYVIGRQ-----GQSDLMIPAIR-QCVLKTDLEAGEILVHLLPGL 169 >UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RNG5_9PROT Length = 190 Score = 169 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ----WQQVQLESWKHHNQD 69 IVLGK+ + YG++G LRV +D W++ G WQQ +L + HN Sbjct: 24 IVLGKIVAPYGVQGALRVCPFADDPSGWSRLTHWWLASEGDAPEAWQQTRLLKCRLHNDM 83 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I +L GV DR AA + V + LP G+YYW DL+G V+ + G LG+++ Sbjct: 84 LIAELAGVVDRTAAEASCGKLVGVPRAALPPTAAGEYYWADLVGLAVINSRGESLGRIIG 143 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +++T +N V+ + ERL+PF+ V+ VDL R + VDW+ Sbjct: 144 LLDTPANAVMRV-----GDGQQGERLLPFV-AAVVLAVDLPGRFVRVDWE 187 >UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMM_SYNFM Length = 176 Score = 169 bits (428), Expect = 6e-41, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQ 59 MSK + P + +GK+ ++GIRG L++F E + + +F++ K G + + Sbjct: 1 MSKTVE---PACLVPVGKVTRTHGIRGALKIFPYGESLAAQAAGERFFLRSKNGGYCTLT 57 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + + ++ + + D + A EI + +LP + EG+YY L+G +VT Sbjct: 58 LIGLRAQGRMLVCGFEEIKDVNGAQPFVGEEIFLPEDRLPPVSEGEYYHYRLIGLDIVTL 117 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +G LG + ++ETG NDV V + +E L+P ++ VI+++DL + + VD Sbjct: 118 DGESLGVLRKIIETGGNDVYVAERE------GREILIPAIE-DVIREIDLERKRMVVDLP 170 Query: 180 PGF 182 G Sbjct: 171 EGL 173 >UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepID=C8UUQ0_LACRG Length = 198 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 6/176 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + D +G + +++GIRG +RV +T+ E F + + S + H Sbjct: 24 GEKMPDYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQH 83 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ K D + ++ V + L LEEG YY+KD++G V+ G LGK Sbjct: 84 KGLTMLTFKDYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVIDEHGQTLGK 143 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V +++ G NDV VI G E L+PFL V++ +DL + V G Sbjct: 144 VSEILSPGPNDVWVIPRP-----GKSELLLPFLKS-VVQTIDLEQKEAHVIVPEGL 193 >UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidithiobacillus RepID=B7J947_ACIF2 Length = 171 Score = 168 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +VLG++ YG+RG ++VFS TE +SI DY PW++ + LE + + ++ K Sbjct: 11 VVLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPD--RRPWVLEDGRMQGEGVVAK 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 L V+DR+ A L EI V + LP+L G++YW L G +V+ EG LG V +ET Sbjct: 69 LAQVEDREQARALIGQEIAVIRADLPELGAGEFYWSTLTGLRVLNREGIVLGTVSAFLET 128 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+NDV+VI D E L+P+ + VDL I VDW Sbjct: 129 GANDVMVI-----DDGKGGELLIPW-SAEASAGVDLPAGQIVVDW 167 >UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GU91_9BURK Length = 188 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 24/194 (12%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--------------- 51 P D + LG++G YG++GW+ V S+E+ + + + W++ + Sbjct: 1 MNVPDDLVELGRIGEPYGLKGWINVLPSSEEPDVLLKSKQWWVSRLPSSEGAVVRRAAQP 60 Query: 52 ---AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYW 108 ++ ++ K H+ ++ L+G++ + A + V ++ P EG+YYW Sbjct: 61 KFEDLVFEPFRVLQSKPHSSRIVAHLEGIEQPELAAQFKGRRVYVSRARFPAPAEGEYYW 120 Query: 109 KDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVD 168 DL+GC+V EG LG V +++ G++ +L +K++ + +E L+PF+ V+ VD Sbjct: 121 VDLVGCRVTNLEGRVLGTVTQVVDHGAHPILSVKSDAE-----QEMLIPFVAAYVV-NVD 174 Query: 169 LTTRSIEVDWDPGF 182 + I+ DW + Sbjct: 175 TQAKQIQADWQEDY 188 >UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechococcus RepID=RIMM_SYNJA Length = 186 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 12/173 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ---LE-SWKHHNQD 69 +++G++ +++G+RGWLRV ++ E + + P ++Q+ + + +E + Sbjct: 10 LLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKGL 69 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L+G+ DR AA +++V +SQ LE +Y++ DL+G V +G LG V Sbjct: 70 YLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYH-QGRLLGHVSA 128 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G DVL I K ++ L+PF+ ++ VDL ++V PG Sbjct: 129 IWAAG-QDVLEIATPDK-----RQVLIPFVKA-LVPVVDLEKGELQVQPPPGL 174 >UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacter RepID=RIMM_GEOSF Length = 174 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 7/169 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMIIK 73 ++GK+ +++G+RG LR+ S + D +S + I+K G + + + K H + +I+ Sbjct: 9 LIGKVSATHGVRGQLRITSFSGDMDSFMALRSVMIKKPGGGMETLAVAEAKAHGKKIILS 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 LKG D + L EI V QLP L +G+YYW DL+G QV+T +G LG++VD++ T Sbjct: 69 LKGYTDINDVLHLVGREIYVLRDQLPLLSDGEYYWCDLLGLQVMTEDGDILGELVDIIST 128 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V+ G KE L+P LD V+ + V G Sbjct: 129 GSNDVYVVH-----GGGDKEILIPALDDVVLDVD-TVAGRMTVSLPEGL 171 >UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobiales RepID=RIMM_RHIE6 Length = 193 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 90/180 (50%), Gaps = 13/180 (7%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M + +T +P+++ +G + G+RG +R + T D ++ DY + ++ Sbjct: 1 MKEPMT--KLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDG---RSFEI 55 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVT 118 + ++++ +G++DR+AA L E+ ++ LP +LE+ ++Y+ DL G + Sbjct: 56 LEIREMKNVVVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARD 115 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G G V + + G+ D+L +K G + L+PF + + ++DL ++ +D Sbjct: 116 DQGVSYGTVTGVFDFGAGDLLELKGP-----GKRPVLIPFSEAS-VLEIDLEAGTLLIDP 169 >UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostridium RepID=RIMM_CLOD6 Length = 171 Score = 168 bits (426), Expect = 9e-41, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 92/167 (55%), Gaps = 7/167 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ ++ G++G +RV+ T+D E + + +++ K ++ +E ++ +I+K+K Sbjct: 10 VGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLN-NKLAVEKVRYKGSMVIMKIK 68 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A L N + V +LEEG+++ D++G +V+T +G +G + D+++ + Sbjct: 69 GIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYSA 128 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 NDV V+K KE ++P + + +D+ R + +D G Sbjct: 129 NDVYVVKGEE-----DKEFMIPAIKK-FVPTIDIDERKMIIDPIKGM 169 >UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodobacterales RepID=RIMM_JANSC Length = 187 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +G + S+G+RG +R+ S + I Y P + Q + L + Sbjct: 5 DHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLT--RPVKAGYA 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 L GV ++ A+ L + S LP L + ++Y DL+G V+ T G +G V + Sbjct: 63 AMLSGVATKEDADALRGTRLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVA 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ D+L + + L+PF V+ VD+ + VD G Sbjct: 123 NHGAGDILELSGPGLPSG----LLIPFTLA-VVPTVDIAAGRVIVDMPDGL 168 >UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZV21_DESOH Length = 170 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDM 70 + + +GK+ +GIRG +RV+S + D F++ G + +E K H + Sbjct: 5 EFLCVGKIVGIHGIRGTVRVYSHSGDIAEFSQGNTLFLRGPKGDERVCTIEWCKPHGRHF 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ +D R+ A + E+ + LP LE+ YYW DL+G V + LG++ + Sbjct: 65 LLGALELDSREQAAAVVGYELFALRASLPPLEDDTYYWDDLIGLAVFDKK-TLLGRITSI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + T NDV V+ DA KE LVP L V+ +DL +++V Sbjct: 124 IPTPGNDVYVV----TDADTGKETLVPALKS-VVGHIDLAAGTMQVSLPESL 170 >UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyclaceae RepID=RIMM_DECAR Length = 170 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 7/168 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D +VLG++ YGI+GWL ++ +D + + W+I + G+ W++ +L+S K H + Sbjct: 5 DIVVLGRLADPYGIQGWLWLYPFGDDPLAWAEMPVWWIAREGEPWRECRLKSLKAHGNGV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ L GV DR AA + + LP E+ ++YW DL+G V+ T +GKVV + Sbjct: 65 VVLLDGVADRTAAESMKGVLVGAPREALPTTEKNEFYWTDLIGLDVINTADERIGKVVGL 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +ETG+N VL + + K ERL+PF+ V+ V+ I V+W Sbjct: 125 IETGANSVLRVMGDDK-----VERLLPFVSA-VVLAVEKEAGQIRVEW 166 >UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KXD1_9GAMM Length = 183 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 12/179 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-------GQWQQVQLESW 63 +D + + + YGI+GW+++ ED +++ + I G + V ++S Sbjct: 2 LDRLTVASIAGVYGIKGWVKLRLFVEDPDTLAQLEQLEISPPAKEPGGQGTSRPVVIDSV 61 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG-- 121 + + + + G+DDRD+A L EI V LP +G+YYW L G V EG Sbjct: 62 RKQGRGTVAHIVGIDDRDSAEALRRYEITVPREGLPDPADGEYYWHQLQGLAVWCREGSG 121 Query: 122 --YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G+V ++ETG+NDVLV+ A + ERL+P L +V+K+VDL R I VDW Sbjct: 122 DAVCVGRVAYLLETGANDVLVV-APTAGSIDDSERLIPLLFDEVVKEVDLERREIWVDW 179 >UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9D0_POPTR Length = 673 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 98/199 (49%), Gaps = 23/199 (11%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQK----AGQWQQVQL 60 T+++ + + +G + + +G++G + V +T+ E ++++ ++V+L Sbjct: 77 TSKSESEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVEL 136 Query: 61 ESWKHHNQD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 + H+ I+K G+D D A LL ++V + P+LEEG++Y +DL+G +V+ Sbjct: 137 VEGRGHHGRKSWILKFGGIDTVDRAKLLVGSTLLVREYERPELEEGEFYSRDLIGMRVIL 196 Query: 119 TE-GYDLGKVVDMMETGSNDVLVI----KANLKDAFGIKE----------RLVPFLDGQV 163 E G +G VV++ + G ND+L + +++ G + VPF++ + Sbjct: 197 KETGECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEA-I 255 Query: 164 IKKVDLTTRSIEVDWDPGF 182 + V++ R + + G Sbjct: 256 VPDVNMNEREMRITPPKGL 274 >UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacillales RepID=RIMM_LISMH Length = 172 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 96/170 (56%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++G+ G +RV ++T+ E F F + + + +++ + S + H ++ Sbjct: 7 VGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKHKNFDLL 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G + + + +QL LEE ++Y+ +++GC VVTT+G +LG++ +++ Sbjct: 67 MFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTDGEELGEITEILT 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+K + K KE+L+P++ V+K++++ + I ++ G Sbjct: 127 PGANDVWVVKGSDK-----KEKLIPYI-ADVVKEININDKKITIEVMEGL 170 >UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0C6_ERYRH Length = 181 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQD 69 ++ I++G + +GI+G L+V T+ E F + G+ +ES++ H+ Sbjct: 17 MEHIIIGIIQKPFGIKGELKVAPKTDFVEDRFAPGQRVHFKLGGKTTDYVIESYRRHHGS 76 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++IK +G++ + EI +D +L E YY+ DL GC V + EG +LG V + Sbjct: 77 ILIKFEGLNSLNDVEFFHKGEISIDRESQHELPEDQYYFIDLEGCTVFS-EGVELGVVSE 135 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +MET ++ VL IKA +D LVPF++ I+ VD ++ I+++W G Sbjct: 136 IMETPAHPVLRIKAEERD------ILVPFVER-FIQDVDTKSKRIDINWMEGL 181 >UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobacillus RepID=RIMM_LACF3 Length = 169 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP--WFIQKAGQWQQVQLESWKHHNQ 68 ++ +GK+ +++GIRG ++V ++T+ + F + ++K ++ +E + H Sbjct: 1 MELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKG 60 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++K K ++ + + E+ V +LEEG YY+ ++G T +G LGK+ Sbjct: 61 LVLVKFKQFNNINEVQHFRDAELKVADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKIK 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ G+NDV V+ K + L+P +D V+K+VDL + V+ G Sbjct: 121 EILAPGANDVWVVDRKQK-----TDLLLPVID-DVVKEVDLAGGKVIVELLEGL 168 >UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBV5_9FIRM Length = 166 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHHNQD 69 ++ I +G + +++G+RG ++V +++ E F +I G +++ + + + H Sbjct: 1 MEKIKIGILTNTHGLRGEVKVKITSDFWEERFAKNAVLYIDVDGHTKELCVVNARLHKGM 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K K DD + + + QL +L E + Y+ ++M +V +G ++G VV+ Sbjct: 61 LIVKFKDYDDINQVEHWKGNALYIFKEQLHELNEDEAYYHEMMNARVQDIDGNEIGTVVE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+N VL ++ +E L+PF+ + D + ++V G Sbjct: 121 LIETGANLVLRVRGE------KREFLIPFVKA-FVTMFDKEKKIMQVTMMEGL 166 >UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3387B Length = 195 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 10/190 (5%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQV 58 M Q + + +G + G++G L+V SST+ E + +I + Q V Sbjct: 1 MQNNYMQQNIDNMLKIGTIVGPRGLKGELKVLSSTDFPERFEISEEHWISDPNKSTLQSV 60 Query: 59 QLESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 +L S ++ I++L+G++ R+ A LL N ++ + + +P+L++ +Y+ L+ +V Sbjct: 61 KLISSRYVMEKNIYIVRLQGIETRNQAELLRNYKLFISNHSIPELKKDEYHISQLINLEV 120 Query: 117 VTTEGYDL-GKVVDMMETGSNDVLVIK---ANLKDAFGIKERLVPFLDGQVIKKVDLTTR 172 + L G V D+ TG +D+L I+ +L ++ ++ LVPF+ +++ VDL R Sbjct: 121 YHQKTKKLIGIVTDVFTTG-HDLLEIELENPSLPESDKKQKFLVPFV-YEIVPIVDLVNR 178 Query: 173 SIEVDWDPGF 182 IE++ G Sbjct: 179 RIELNPPKGL 188 >UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=RIMM_HERA2 Length = 174 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 7/172 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +TA D +++G++ +++G+RG L++ + E I + F+ + + + Sbjct: 1 MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFVGDLSKPYTIG-RLHQ 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 H +++L VD RDAA + E + S L +Y+ DL+G QV T G D+ Sbjct: 60 HKGSLYLLRLNEVDTRDAAEAMQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGEDI 119 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G+ V+++ETG+NDVLV++ G + LVP + V++ +D+ +I V Sbjct: 120 GRAVEIIETGANDVLVVRK-----LGQADILVPMVR-TVVRSIDIAGGTITV 165 >UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKU2_DESAH Length = 172 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQDMI 71 LG + +G++G+L+V S E+ ++++G+ + + H + ++ Sbjct: 5 LFTLGVVTGVHGLKGFLKVRSFAGSLETFKSGLEMVVRRSGKADECYTILKASPHKKGIL 64 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ GV DRDAA E++VD LP+ E+ Y+W+DL+G +V LG + +M Sbjct: 65 MQFSGV-DRDAAETFVGAELLVDRRLLPEPEDDAYFWEDLIGLKVTDRTLGFLGTIDSIM 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETGSNDV V+K N KE L+P L V+ VDL + VD G Sbjct: 124 ETGSNDVFVVK-NKDKGLKNKEFLIPGL-ASVVIGVDLERGEMTVDLPEGL 172 >UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermotogaceae RepID=RIMM_THEP1 Length = 176 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQD 69 + + +GK+ +++G++G ++ F T E + + + + + + +ES + N+ Sbjct: 11 ERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNSEKKAFYNLTVESVRRMNKL 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+ K +D +AA + CE+ + +LP+L E +YY+ +++ C V G ++GKVVD Sbjct: 71 FLIRFKSIDTIEAAERIKGCEVFIKYEELPKLSEDEYYFYEILDCDVFYESGENVGKVVD 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 ++ETGSNDVLV++ KE L+P ++ ++D + I Sbjct: 131 IIETGSNDVLVVRKK------KKETLIPMTKDCIV-EIDKGAKKII 169 >UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactobacillus RepID=RIMM_LACH4 Length = 171 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 7/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 + ++ +++G+ G ++V T+ E F ++ + + +E + Q +I+ K Sbjct: 6 VARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFWLIQFK 65 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETG 134 + D D A L +VV +L +G YY+KD+ C V+ E G +GK+VD+ G Sbjct: 66 EITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGKRIGKIVDIQSPG 125 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ND+ +++ + KE +P + V+KKVD+ + + V+ G Sbjct: 126 ANDIWLVRED-----DGKEYWIPNI-ADVVKKVDVAAKKVYVELMEGL 167 >UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthobacteraceae RepID=RIMM_XANP2 Length = 185 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 5/167 (2%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D I++ ++G+ +G+RG +R+F TED ++ DY P + A ++ ++ + + Sbjct: 2 ADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDP--LTDATGKKRFRIAALRAAKDHF 59 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVVD 129 + +++G+ DR AA LTN ++ V LP ++ D +Y DL+G VV G +GKVV Sbjct: 60 VARIEGIADRTAAEALTNLDLFVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVVA 119 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 + + G+ D+L L A K +VPF + VD+ R + V Sbjct: 120 LQDFGAGDILEYAPTLP-ATKAKTLMVPF-SKDAVPVVDVPGRRVVV 164 >UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechococcus sp. PCC 7002 RepID=RIMM_SYNP2 Length = 175 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 11/178 (6%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWK--H 65 A D I++G++ ++ G++G +R+ ST+ E ++Q Q Q V+LE + Sbjct: 2 AEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY-DL 124 ++K + + DR A + +++V + P+LE +Y+ DL+G +V L Sbjct: 62 GKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKL 121 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V D+ T + DVL + K+ LVPF+ ++ VDL +EVD PG Sbjct: 122 GIVSDLY-TAAQDVLEVTD-----ANQKKHLVPFVKA-IVPVVDLVENRLEVDAPPGL 172 >UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli RepID=RIMM_LACSS Length = 176 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWKHHNQ 68 P +GK+ +++GIRG +RV ++T+ E F ++ V + + + H Q Sbjct: 2 PEKYYQVGKIVNTHGIRGEVRVIATTDFTEERFKKGTHLAVEMPNGLTPVTVSAMRQHKQ 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTT-EGYDLGK 126 +++ +G+ + + L + + +S+ LE+ +YY+ D++G +V+ +G GK Sbjct: 62 FYLLQFEGLGNINDVELFKGHNLKIAASERDDQLEDDEYYYGDIIGLEVIEESDGTSYGK 121 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++++ G NDV VIK G + L+PFL VIKK+D+ V+ G Sbjct: 122 VSEIIDPGPNDVWVIKRR-----GRSDLLLPFLKS-VIKKIDIEAGKAYVEVPEGL 171 >UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobiales RepID=RIMM_AGRRK Length = 190 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +P+++ +G++ G+RG +R + T D ++ DY + ++ + + Sbjct: 5 ENPVLMATIGAAQGLRGEVRARAFTSDPTALGDYGHLHSMDG---RIFEVLEIREAKNVV 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 I++ +GV++RDAA L E+ ++ LP +LE+ ++++ DL G + V +G G V Sbjct: 62 IVRFRGVNNRDAAEALNGLELYIERDNLPDDELEDDEFFYTDLEGLEAVDDKGTAYGTVS 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + + G+ D+L +K G + L+PF + + ++DL I +D Sbjct: 122 GVYDFGAGDLLELKGP-----GKRPVLIPFSEAA-VLEIDLEGGKILIDPM 166 >UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Caulobacteraceae RepID=B4RCD0_PHEZH Length = 167 Score = 162 bits (410), Expect = 7e-39, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 8/170 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I++G++ ++G+RG +R+ S T + ++ DY+ +++ + L S + + Sbjct: 3 DSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRD--LKREDGRPALTLLSGRPAKGGL 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +++ + V+ R+ A L + + LP+ EE ++Y DL+G V T +G LG+V ++ Sbjct: 61 VVRAQEVETREQAEALRGLNLYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNV 120 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D+L I+ A+ +PF + + +V L + Sbjct: 121 QDFGAGDLLEIEPPEGAAWY-----LPFTK-EAVPEVRLAEGKVVAVRPE 164 >UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7M6_9GAMM Length = 180 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 9/173 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-----VQLESWKHHNQ 68 +VL ++ ++GI+GWL++ ED + + + + +Q V++ + + + Sbjct: 5 LVLAEVLGAHGIKGWLKIRPLVEDPTFLEGLEGLVLASGPKMRQADSRGVKVTNLRPQGR 64 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY---DLG 125 +I++ GVDDR A L + ++ LP LE+GD+YW+DL G +V LG Sbjct: 65 GWVIQVSGVDDRTQAEALRGMVLRGSAALLPDLEDGDFYWRDLEGLRVWCEAPEGLCLLG 124 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ ++ETG+NDVLV++ + + KERL+P+L +V+ VD+ ++ V W Sbjct: 125 EIDHLLETGANDVLVVR-PCEGSMDDKERLIPWLVDEVVHSVDMDAGTVRVIW 176 >UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfitobacterium hafniense RepID=RIMM_DESHY Length = 170 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 93/172 (54%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +D +++G++ +G++G ++V+ T++ + + + + + +++++ H ++ Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSEV 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L+G++ RD A + + D Q+P L+EG +Y+ +L G QV LG + + Sbjct: 61 YLTLEGINTRDKAEAIRGWAVKADRDQVPPLKEG-WYYFELEGMQVY-EGDVLLGTLAQV 118 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TG+NDV ++K + E VP L V+K VD+ + ++V+ PG Sbjct: 119 IQTGANDVYLVKGDKG------EICVPALK-TVVKHVDVAGKRMDVELPPGL 163 >UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococcus oeni PSU-1 RepID=RIMM_OENOB Length = 166 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 91/172 (52%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + + +G++ +++GI G L++ +T+ E F + +++ ++S + Q Sbjct: 1 MKELRIGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLIAG---EKLVVQSSRPFKQFW 57 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++K ++ + +I ++ + P+L EG++ ++G +V+ +G +G++ D Sbjct: 58 LVKFSDHENINLVEKYKGEDIFINERKEPRLSEGEFLVSQIIGLKVIDEKGNSIGEIADS 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDV IK + KE L+P++D QV+KKVDL T ++ ++ G Sbjct: 118 FHTGANDVWTIKKSNG-----KEILIPYID-QVVKKVDLQTSTVTIELLEGL 163 >UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ73_9CLOT Length = 172 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 88/167 (52%), Gaps = 7/167 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +GK+ + G++G +RV+ +T+D + +++ K + ++E ++ +I+K+K Sbjct: 10 VGKIVKTQGLKGDVRVYPTTDDIYRFDYLEEFYVGKDRE-NPWEVEDVRYKGNLVIMKIK 68 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A L +I V + +LEEG+++ D++G V T G +G + ++++ + Sbjct: 69 GIDRVEEAEKLVGKDIYVSRDESFELEEGEFFIADMIGMDVYTVSGEKVGVLKEVLQYSA 128 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 NDV VIK KE L+P + + ++D+ + +D G Sbjct: 129 NDVYVIKNEEG-----KEYLIPAVMK-FVPEIDIEEDKMIIDPIKGM 169 >UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMM_ACIC1 Length = 176 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + +G++ ++G+ G + V T+D + F G + ++ + H+ +++ Sbjct: 11 RVAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGAVLTTDTG--VTLTVQRTRWHSGRLLV 68 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + G+DDR A L + + + + E+ +YY L+G +V T G ++G V +++ Sbjct: 69 RFAGIDDRTTAEDLRGRVLFAEVDERVRPEDPEEYYDYQLIGMRVETVTGQEIGVVREVL 128 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DVL I+ + + VPF+ ++ +VD+ R + +D PG Sbjct: 129 HLPGQDVLAIERSA-----DGDAFVPFV-AALVPEVDVDQRRLRIDPPPGL 173 >UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EI68_PEDAC Length = 192 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 12/172 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAG----QWQQVQLESWKHHNQDM 70 + K+ ++ G+RG L+V + T+ E F + K Q V ++S K Sbjct: 27 VAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKPFKGMW 86 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +I+L G+D + + + QL +L +G++Y ++G V+ +G LGKV ++ Sbjct: 87 LIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHKIIGLTVI-EDGQTLGKVKEI 145 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G NDV V++ G K+ L+P+L+ V+ KVDL +EV G Sbjct: 146 LSYGPNDVWVVERP-----GKKDLLLPYLN-DVVLKVDLDKSIVEVAVPEGL 191 >UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD56_9FIRM Length = 162 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I + ++ +++G++G +++ T+D + F+ + G + + + ++ Sbjct: 1 MIKVAQIINTHGLKGECKLYLVTDDPQHRFEKGRVLHLEDG--RTLTVVRYREQKGFGYC 58 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G+D + A L + + LP+LEEG YY+ +LM C V + +LG+VVD++E Sbjct: 59 YFEGIDSIEKAEQLKTKNLFIAQDDLPELEEGQYYYHELMNCTVYNEKKENLGEVVDILE 118 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+N VL +K+ L+PF+ ++ V+ T I + G Sbjct: 119 TGANLVLRVKSKNTS------FLLPFVPAFIV-DVNKDTHEIIIREMDGL 161 >UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRI5_DESVM Length = 210 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I +G +G +G+RG + V E + + W G + + + + H Sbjct: 4 DSFIEIGLVGRPHGLRGEVGVDFWAESPD-LLRGTLWLRPGRGAPRPHTVAAVRRHQGRP 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVD 129 ++ +G+ DR AA L ++V +LP+ E + Y +L+G +V+ + G LG + D Sbjct: 63 LVLFEGIADRSAAETLRGMHVLVPKDRLPEPAEDEVYLHELLGLRVLLHDTGAALGTLDD 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G +V I+ KE L+P ++ + + +DL R + + PG Sbjct: 123 VQMPGGQEVWSIRT-----ADGKEVLLPAVE-EFVASIDLDAREVRITPPPGL 169 >UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomycetales RepID=RIMM_SACEN Length = 180 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 10/173 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF---IQKAGQWQQVQLESWKHHNQDM 70 + +G++ +G+RG L V T+ E F + A + + + + H + Sbjct: 9 LAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRRGAHASENFTVAAARPHAGRL 68 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ +GV+ R+AA L + V + +L ++ +++ L G +VV G + G V + Sbjct: 69 LVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAGVVAE 128 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T + ++L ++ +E LVPF+ +++ ++DL I VD G Sbjct: 129 VVHTPAGELLAVRTP-----DDREVLVPFV-SEMVPEIDLEAGRIVVDPPEGL 175 >UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SPN7_9FIRM Length = 181 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D + +G + SS+GI+G ++V+ +T+D + + ++ + +V S K + Sbjct: 6 EDRLRVGVITSSHGIKGEVKVYPTTDDNDRFKTLEKCYLSNGRETLEVNCTSCKFLKNMV 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+K + D+ + N +I+VD L +G+++ D++ V +G + D+ Sbjct: 66 ILKFEEYDNINDIERFKNYDILVDREDAVPLMDGEFFICDVLDADVYDQNDEHIGILDDV 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 +ET +NDV V+K + E L+P + + VD R ++V Sbjct: 126 LETPANDVFVVKKD-----DGGELLIPVV-SDFVYDVDTENRKVKV 165 >UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobacteraceae RepID=RIMM_CAUSK Length = 192 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +T +P + I++G++ ++G+RG LR+ + TED ++ ++ Q + +++ + Sbjct: 1 MTQSSPQNLILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSP--ALTVQTAR 58 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYD 123 ++ + GVD ++AA+ L + V + LP+ +E +YY DL+G V Sbjct: 59 VVKDGVVARCAGVDTKEAADALRGLRLYVPRAALPEPDEDEYYLADLIGLPVRHVATDEL 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LGK+ + G++D+L I A G + +PF + +V + + D Sbjct: 119 LGKIKSVQNFGADDLLEIDP----ALGGQTWYLPFTRAA-VPEVKIADGVVLADPP 169 >UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C7MY86_SACVD Length = 174 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--AGQWQQVQLESWKHHNQDMI 71 +V+G++ +GIRG + V T+ E F + K G+ + + + + + H ++ Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKMRDGRTRPLTVAAVRPHGGRLL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ V DR AA + +++D +LP +++ ++Y +L G + +G +G V ++ Sbjct: 63 VRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGTVREV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + ++L ++ ++ +E LVPF+ ++ +V++ I +D G Sbjct: 123 VHSPGGELLAVEVE--ESGRRREVLVPFV-AAIVPRVEVDRGRIVLDPPEGL 171 >UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVQ3_DESAD Length = 185 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 7/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQD 69 ++ +V+ ++ +G+RG + + S + + ++ K GQ ++ + S + H Sbjct: 1 MEMLVVAEVVKPHGLRGEVCIESHADSPFLFDEVPCLYLAKKGQKPRRFVVRSSRKHKGR 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ KGV+DRD A L EI+V + LP+ + + Y +L G V +G +G + + Sbjct: 61 VLLTFKGVEDRDQAENLRGMEILVREADLPESGDDEVYMYELEGMSVELEDGTVVGTISN 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + VI + KE L P ++ + + VDL + V+ G Sbjct: 121 FILAPGQETWVI-----SSAEGKEILFPAVE-EFVLSVDLDAEKVVVEPPEGL 167 >UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAC2_WEIPA Length = 191 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 91/182 (50%), Gaps = 8/182 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDA-ESIFDYQPWFIQKAGQWQQVQ 59 +++ + + + +GK+ +++GIRG +R+ +T+ E + IQ VQ Sbjct: 14 INRTIEKEENMALYKVGKIVNTHGIRGEVRIVPTTDFPAERFKKNKNLIIQTPEGNLTVQ 73 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 + + + H Q M++ G+ + + +CE+ V L + ++Y+ +++G V+ Sbjct: 74 IATSRQHKQFMLVSFVGMGNINDVEQYKDCEVFVADELQQALPDDEFYYHEIIGLDVIDN 133 Query: 120 E-GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +GKV ++M +NDV V+ A G ++ L+PF++ V+ +DL T + +V+ Sbjct: 134 ATNEIIGKVSEIMPMPANDVWVVH-----AKGKEDLLLPFIE-DVVTAIDLDTGTAKVNL 187 Query: 179 DP 180 Sbjct: 188 LE 189 >UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QFI5_9RHIZ Length = 185 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 84/168 (50%), Gaps = 8/168 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I+LG++ +GIRG + V + T ++I Y P + A + L+ + ++ ++ Sbjct: 9 RILLGEISGVHGIRGDILVRTYTATPDAIASYGP--LTDATGTKTFSLKIVRVTDKGVVA 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 ++ G+ DR A L ++ + +LP+ ++Y DL+G V + +GK+V + Sbjct: 67 RIAGISDRTTAEALRGTKLFIAREKLPETSASEFYHSDLIGLNAVAEDNTPIGKIVSVQN 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G+ D+L ++ + +PF + Q + KVDL+ R++ + P Sbjct: 127 FGAGDLLELQPPEGASE-----FIPF-EDQWVPKVDLSARTVVIRRPP 168 >UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMM_CARHZ Length = 172 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + I +G + ++GI GW++V T+ + + + F +K + +++E + + ++ Sbjct: 3 NLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQLQAERIL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K ++D AN L + + +++ QL+E ++Y L G V +G V ++ Sbjct: 63 VKFMEINDIKEANKLIFGYLKIPKNEIVQLKENEFYLFQLKGLTVYDLNYQKIGVVRTVL 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +ND+LVI D KE L+PF+ +K+V+L I+V+ PG Sbjct: 123 KNPANDLLVI-----DTIHDKELLLPFIK-VFVKEVNLPEGFIKVELLPGM 167 >UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinomycetales RepID=RIMM_MYCA1 Length = 175 Score = 158 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK---AGQWQQVQLESWKHHNQDM 70 + +G++ ++GI G + V T+D + F K G + +ES + H + Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L GV DRDAA+ L VVDS++LP ++E YY L G QV TT G +G V + Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGAVAE 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T + ++L ++ + A +E LVPF+ ++ V L IE+D G Sbjct: 123 VLHTAAGELLAVRDDADGA--PREVLVPFVSA-IVTAVSLDDGLIEIDPPDGL 172 >UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHG4_RHOM4 Length = 179 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 90/178 (50%), Gaps = 11/178 (6%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLESWKHHNQ 68 P + +++G + ++G+RG +V T+D + ++ ++ + + V+LE ++ Sbjct: 6 PDELLLMGYVARAHGVRGAFKVVPETDDPTRFETLETIYVGRSPETARPVRLERVQYQPT 65 Query: 69 D----MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +++++ V DRDAA L + S LP L EG+++ DL+G +V T G + Sbjct: 66 RRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLPPLAEGEFFLHDLIGLRVETEAGETV 125 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V++++E ++ + V+ G +VP ++ ++++DL R + + G Sbjct: 126 GTVIEVLEMPAHLIYVVGRP-----GRPHAMVPDVE-VFVRELDLEGRRLVIRPIEGL 177 >UniRef50_Q0AKL5 Ribosome maturation factor rimM n=2 Tax=Hyphomonadaceae RepID=RIMM_MARMM Length = 185 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 + D + + + ++G+RG +V S + F Y F+ G+ + ++ + Sbjct: 3 EPADDLVFIAAIAGAHGVRGECKVKSFAGNPADAFKYGA-FLDIDGK-TILTPKAARPVK 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++ DRD A L ++ V S LP+LEE ++Y DL+G +V +G +G + Sbjct: 61 DGFVVRFAEPLDRDKAQALKGTKLHVLRSALPELEEDEFYHSDLLGLKVQGLDGAPMGTL 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 + GS D+L I ++PF + + V + I +D Sbjct: 121 KAVHNFGSGDLLEITGTPDR---NGSWMLPFTR-EFVPHVSIAEGVITIDPPED 170 >UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosipho RepID=RIMM_THEM4 Length = 178 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQD 69 D + + +G ++G+ G LR+F T E I + FI +K + ++ N Sbjct: 11 DKVPIAVLGKTHGLNGELRLFPLTNMPEVIESLEEVFIYNEKVKKLLIGRIIHMSLANGY 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I+K +G+D + A + ++ S+LP L +YY+ +++G +V +G LG + + Sbjct: 71 YIVKFRGIDTLNDAKKFVGSTLYIEKSRLPILSSDEYYFYEVIGMKVYDEKGIFLGNIDE 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +++TGSNDV VI + KD E L+P + + + ++D + I V Sbjct: 131 VIQTGSNDVFVINKDTKD-----EILIPVIK-EYVLQIDKKSNKIVVKLPE 175 >UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y0X8_9BACT Length = 175 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 82/173 (47%), Gaps = 9/173 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHH--NQD 69 +V+G++ ++G+RG +++ T+ E F+ + F + ++ + Sbjct: 6 RVVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRDGKHAGSYRVTGMRDALTRGC 65 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + L+GV+ + A LL C + + + L G+++ DL+G + G LG V D Sbjct: 66 FLAALEGVETIEQAELLRGCSVEIAPDERVPLAPGEFWISDLIGLEACDDRGSKLGVVKD 125 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++++G++ ++V++ + G K+ L+P + + DL R + + G Sbjct: 126 IVDSGASQLVVVRDD-----GGKDHLIPA-APEFLLGADLEARRVTLRLIEGL 172 >UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobacteria RepID=RIMM_TRIEI Length = 208 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 36/203 (17%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE----SWKHHNQD 69 I +GK+ + G++G LRV+ S++ E + ++ GQ + + +E + Sbjct: 5 IEIGKIVAPQGLKGDLRVYPSSDFPERFTEPGKRWLLSPGQVEPISIELLSGRYVPGKGL 64 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKVV 128 +I+L G+ R A L N +++++ PQLE ++Y DL+G V+ G +GKV+ Sbjct: 65 YVIELAGIKSRQQAEALRNSQLLIEKGDRPQLEADEFYVPDLIGLTVINQLNGKTIGKVI 124 Query: 129 DMMETGSNDVLVIKANLKD-----------------------------AFGIKERLVPFL 159 +++ ND+L ++ D + K+ L+PF+ Sbjct: 125 NII-FAGNDLLEVEKISTDTPVISEVVENNLPSKSKRSRDTKNQKKNQSPPSKKILIPFV 183 Query: 160 DGQVIKKVDLTTRSIEVDWDPGF 182 +++ V+ IE+ G Sbjct: 184 K-EIVPIVNFEQSIIEITPPDGL 205 >UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechocystis sp. PCC 6803 RepID=RIMM_SYNY3 Length = 185 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 11/188 (5%) Query: 1 MSKQLT-AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQ 57 M++ +T Q + + +G + ++ GI+G +RV S+++ +I+K Q Q Sbjct: 1 MAEPMTEQQKTENWLEIGTIVAAQGIQGEVRVLSASDFPARFLTKGQRWIRKTPQETPQP 60 Query: 58 VQLESWK--HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQ 115 + L+ K I++ + DR+ A L N +++V ++ LE G+++ DL+G Sbjct: 61 LTLKKGKQIPGKNLYILRFTEITDRNQAEALVNYQLLVPATDRLPLEPGEFHVTDLLGLI 120 Query: 116 VVTTE-GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 V + G LG V D G ND+L I D KE LVPF++ ++ V+L + + Sbjct: 121 VYDHDNGDRLGIVTDFYSAG-NDLLGITL---DKNPDKEVLVPFVEA-IVPTVELAEQRL 175 Query: 175 EVDWDPGF 182 E+ PG Sbjct: 176 EIKTIPGL 183 >UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=RIMM_KOSOT Length = 200 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 86/157 (54%), Gaps = 3/157 (1%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQ 68 I +GK+ +G+RG +++ S T + + + +KAG + ++++ + + Sbjct: 10 DSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGK 69 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 I+ KG +AA + + + LP L+EG+YY+ L+ C+V EG +GKV Sbjct: 70 GYIVHFKGFKSVEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVT 129 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 D++ETG+NDV+V+ L D F ++E L+P + +++ Sbjct: 130 DIIETGANDVIVVTKELPD-FTVEEELIPVIKDYIVE 165 >UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostridium RepID=RIMM_CLOPS Length = 165 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 97/168 (57%), Gaps = 12/168 (7%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D +V+G++ +++G+RG ++V TED FDY + I K Q++++E K+ + Sbjct: 2 EDLLVVGQIINTHGLRGEMKVMPLTEDM-RRFDYLEYVILKG---QKIKVEGVKYFKDKV 57 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+KL+G++ + A L + ++ +LEE +Y+ DL+GC VV TEG++ GK+ D+ Sbjct: 58 ILKLQGINSIEEAEKLKRTYLEIEREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKDV 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++T SNDV ++ G KE LVP L ++ +++ + I + Sbjct: 118 IQTPSNDVYWVQ-------GKKEVLVPVLK-DIVLDINMDEKLITIRP 157 >UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliphilus RepID=RIMM_ALKMQ Length = 168 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + +G++ +++GI+G L+V S ++ E + + +IQ G ++ + + K+ +I+ Sbjct: 4 MLKVGQIVNTHGIKGELKVTSLSDYLERFEELEWVYIQ--GYDEKYYIGNIKYRPTTVIL 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G D+ + +++D SQ +L E +Y DL+G T E LGK+VD+++ Sbjct: 62 SFEGYDNINIVEQFKGKYVLIDESQRRELPEDTFYKADLIGLDGYTVEEVYLGKLVDIIQ 121 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSN+V V + D K+ L+P + + I ++ L + I VD G Sbjct: 122 AGSNEVYVFR----DKETNKDILIPAVK-EFIPEISLEKKRITVDPIEGM 166 >UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidaminococcus RepID=D2RIH1_ACIFE Length = 164 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 IV+GK+ + +G+RG R+ T+ E + + ++ + S + H ++ Sbjct: 4 HIVIGKIVAPHGVRGEFRIMPQTDHPERYAKMKKITLDNG---REYTVVSLRQHKNVYLM 60 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K++G+D + A L IV+ +LP L EG +Y +D++G VT EG +G + D++ Sbjct: 61 KVEGIDSMNDAETLRGRTIVLRPEELPPLPEGQFYVRDIIGFAAVTPEGETVGTLKDVLS 120 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GS DV VI + + LV + G I+ +D + I V Sbjct: 121 PGSTDVFVIAPPQGE-----DILVAAI-GDNIRNIDWEKKQITVVLPE 162 >UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli RepID=RIMM_BACA2 Length = 174 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP---WFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++GI+G +RV S T+ AE + F + A + +V + + + H Q ++ Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFAEGAAEPIKVTVSAHRLHKQFHLL 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + K + + L N I V L +LEE ++Y+ +++GC+VV+ +G +G V +++ Sbjct: 68 QFKEMPSLNEVEHLRNMVIKVPEEDLGELEEDEFYFHEIIGCEVVSEDGELIGTVKEILT 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ G K+ L+P++ V+K +++ + I++ G Sbjct: 128 PGANDVWVVARK-----GKKDALIPYI-ASVVKDININEKKIKIHVMEGL 171 >UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=RIMM_RHORT Length = 201 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + +++G + S+G+RG +RV S T+D ++ DY P + + V++ + +I Sbjct: 3 ERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRN--QAKGVVI 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQ--LEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ GV DR AA+ L + +D + LP LEE +YY DL+G V +G LG V Sbjct: 61 CQIPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHS 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + G+ D+L + A G + L+PF V+ VD+ + D G Sbjct: 121 VHDFGAGDMLEVTL----AQGRRSVLLPFTKA-VVPLVDVKAGRLVADPPLGL 168 >UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6K4_THEAS Length = 181 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ------KAGQWQQVQLESWKHH 66 + +G + ++GI+G L++ T+ E + +++ + +++++ + Sbjct: 7 RVTVGCIVGTHGIKGSLKLKPLTDYPERFLHMETLYLELPQVKGRHRPPRELKILDVRFQ 66 Query: 67 --NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYD 123 I+ L+G+D + A L I V LEEG Y+ D++G +VV Sbjct: 67 DGKDLFIVTLEGIDTIEMAEDLKGALITVAPEDRVPLEEGVYWIDDIIGLEVVEDETDAV 126 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V D+M TGSNDV ++ ++P G+VI+KVDL R I V G Sbjct: 127 LGVVEDVMPTGSNDVYEVRTPDGVLK-----MIPAT-GEVIRKVDLEARQIRVHLLEGL 179 >UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostridium RepID=RIMM_CLOK5 Length = 162 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 88/169 (52%), Gaps = 12/169 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G++ +++G++G L+V+ T+D + + +++ + + K ++ +I Sbjct: 3 DFITVGQIINTHGLKGELKVYPLTDDINRFKELKSVYVEGILK----NITGCKLQSKKVI 58 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K++G+D + A + V +LEEG Y+ D++GC+V+ EG GK+ +++ Sbjct: 59 LKIEGIDSIEKALEYKGKYLEVSRENAVKLEEGRYFIVDIVGCRVIDEEGVFYGKISEVI 118 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 T NDV IK G E L+P ++ V+ KVD+ + I + Sbjct: 119 HTHRNDVYWIK-------GDNELLIPAIEN-VVLKVDVEKQEIIIKPVE 159 >UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_PARL1 Length = 188 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 9/183 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M+ + LG + ++G+RG +RV TE E + Y P + + L Sbjct: 1 MAPTPDRDGQDKKVCLGVVTGAHGVRGLVRVKPYTEMPEGVAAYGPVETKDGATSFAISL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD--YYWKDLMGCQVVT 118 + +I KL+GVDDRD A L E+ V +LP+ + +Y+ DL+G + V Sbjct: 61 KGM--AKDLVICKLEGVDDRDVAAALRGTELYVPRERLPRASGDEEGWYYADLIGLRAVG 118 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G D G++ + G+ D+L I A G + L+ F D + + +VD+ + +D Sbjct: 119 LDGRDYGRIAGVENFGAGDLLEIAP----AEGGQTVLMGFTD-ENVPEVDIAGGRVVIDP 173 Query: 179 DPG 181 G Sbjct: 174 PAG 176 >UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BF33 Length = 169 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 90/173 (52%), Gaps = 11/173 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQD 69 D +++G++ +G+RG + V ++T+D E F + +AG+ +Q+ +++ + H Sbjct: 4 ADMVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTTLLGVQAGREEQLTVKTARPHQGR 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++++ + + R+ A + + P E+ D+Y +L+G VV G D+G+V Sbjct: 64 LLVRFEEIPGRNEAERHRGMKFYAE----PVFEDEDFYDFELVGLHVVH-NGTDIGEVTS 118 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ ++ +L + + G +E L+P ++ +++ +VDL ++ + G Sbjct: 119 IVRAPAHRLLEVTLD----AGGREVLIPLVE-EIVPEVDLENSTVTITPPEGL 166 >UniRef50_C0XS98 16S rRNA-processing protein n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XS98_9CORY Length = 182 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMII 72 +++GK+ S+GI+G + V T+D + F ++ G+ +++ +++ + H +++ Sbjct: 19 LLIGKVVKSHGIKGEVAVEVLTDDPDQRFAVGEVLTGRQPGKERELTIKTLRPHQNRLLM 78 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + V DR A+ L + + E ++Y +L+G +V+ EG ++G+V +M+ Sbjct: 79 SFEEVPDRTQADSLRGMQFFAPPLEREDDSE-EFYDHELIGLKVIH-EGREVGEVTGVMD 136 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T + +L I + +E LVPF+ + ++DL +++ + G Sbjct: 137 TPNRKILEID------YDGREVLVPFV-IDFVPEIDLGEQTLTITPPEGL 179 >UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconostoc RepID=RIMM_LEUMM Length = 173 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +G + +++GIRG +++ + T+ A+ F FI V+++S + H ++ Sbjct: 10 VGTIVNTHGIRGEVKIMAITDFAQDRFKKGADLFIDTKQGRIPVKVQSSRLHKNMWLVLF 69 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 GV + + ++ ++ + P+LE+ YY+ +++ VV +G +G V ++METG Sbjct: 70 VGVTNINEIEKYKGDDVYIEGTARPELEDDQYYYDEIIDSTVVDLDGNKIGVVKEIMETG 129 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +NDV +++ + G + L+P +D V + + I +D G Sbjct: 130 ANDVWIVQRD-----GQSDALIPMIDDVVKSVD-VDAKLITIDALEGL 171 >UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucleobacter necessarius RepID=RIMM_POLSQ Length = 188 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 17/187 (9%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-------------QK 51 ++ + + I LG + + G++G ++V + D ++ + ++ + Sbjct: 1 MSTPSLDNLIELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTE 60 Query: 52 AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDL 111 Q +++S K H+ ++++ L GV DRD A L I++D P+ E YYW DL Sbjct: 61 EATLTQYKVKSAKMHSGNVVLTLDGVSDRDQALALKGARILLDRDAFPKAESDSYYWVDL 120 Query: 112 MGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 +GC+ + LG V+D+ E G++ V+ I + LVPF+ +V++ VDL Sbjct: 121 IGCKAKNLQDEILGDVIDVTENGAHGVIAIGDISTKTI---QYLVPFVK-EVVRNVDLPN 176 Query: 172 RSIEVDW 178 + + +DW Sbjct: 177 KLLTLDW 183 >UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthrospira RepID=B5W499_SPIMA Length = 212 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 38/207 (18%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWK--HHN 67 D I +GK+ ++ G+ G +RV+ +++ E + ++QK GQ V+L + Sbjct: 3 DWIEIGKIVAAQGLDGEMRVYPNSDFPERFIEPGTRWLQKPGQNEPSPVELLGGRFIPGK 62 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-LGK 126 I++ GV+ R+ A L + + + P L++ ++Y DL+G +V + D +G Sbjct: 63 GLYAIEMVGVETREQAEALRDSRLFIQYGARPHLDDNEFYVLDLIGLEVFNQDTQDMIGT 122 Query: 127 VVDMMETGSNDVLVIKAN-------------------------------LKDAFGIKERL 155 V+D++ G ND+L ++ N A K L Sbjct: 123 VIDVIPAG-NDLLEVQLNFTPTEEDLATDTERQAKLEKIPQNKRRKRHFQTKAKQPKTVL 181 Query: 156 VPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +PF+ ++ VDL R +E+ G Sbjct: 182 IPFVK-DIVPVVDLENRRLEITPPQGL 207 >UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehalococcoides RepID=RIMM_DEHE1 Length = 167 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + I++GK+ +GI G L++ T+ E I +A + + Sbjct: 5 EEYILIGKVLGVWGINGGLKIEVLTDFPERFDAGNELLIGRA----PYTISQTSWQKAQV 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+ L + DAA L+ ++ + ++ L +L +G YY L+G +V G +G++ ++ Sbjct: 61 IVHLSEITGIDAAEELSGAQVEIPAAALKKLPKGVYYDFQLIGLEVTDLSGNRIGQIKEI 120 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + SND+ V ++G KE L+P + V+K+++L + +D PG Sbjct: 121 LHMPSNDIYV------SSYGAKEALIPAVK-DVVKEINLQKGQVIIDPIPGL 165 >UniRef50_C5YVW0 Putative uncharacterized protein Sb09g028680 n=2 Tax=Andropogoneae RepID=C5YVW0_SORBI Length = 663 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 87/193 (45%), Gaps = 22/193 (11%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQ----KAGQWQQVQLESWKH 65 + + +G + ++G+RG + V T+ E + +++ Q ++ +L + Sbjct: 94 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 153 Query: 66 H--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GY 122 H + I+ G+D+ D A + ++V + P++E+ ++Y DL+G +V+ + G Sbjct: 154 HTGKKSWIVSFDGIDNLDEARQIVGSAVLVKAGDRPEIEDDEFYSLDLVGMRVIVKDTGK 213 Query: 123 DLGKVVDMMETGSNDVLVI------------KANLKDAFGIKE-RLVPFLDGQVIKKVDL 169 +G V + G D+L + + +D+ +E +PF + ++ VD+ Sbjct: 214 VVGTVGQIFNFGGGDLLQVMIGSAEGTAVDPDSENQDSISSREHVWIPFAE-DIVPDVDM 272 Query: 170 TTRSIEVDWDPGF 182 +R + + G Sbjct: 273 ASREMWITPPKGL 285 >UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francisella RepID=RIMM_FRATN Length = 169 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQD 69 D + + K+G++Y + G L ++ E++ Y W+IQ WQQ++ ES Sbjct: 4 DFVEIAKIGATYKLDGELNLYPLANSIETLISYGDWYIQLPATNVWQQLKGESVLKRADK 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + IKL ++D D A N I V LPQL E + Y+KDL+GC V G VVD Sbjct: 64 VYIKLANINDADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVD 123 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+N+VLV K + E L+P++ ++ + DL ++ I VDW+ + Sbjct: 124 IIETGANEVLVCKED------NSEYLIPYVKQYIVSE-DLNSKKIVVDWEYDY 169 >UniRef50_A3TRE4 16S rRNA-processing protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TRE4_9MICO Length = 183 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 86/178 (48%), Gaps = 13/178 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA----GQWQQVQLESWKHHN 67 + +++ ++G +G+RG + V + T+D E+ + F +A G + + + + + H Sbjct: 6 NALLVARIGKPHGLRGEVTVQTHTDDPEARYVPGTVFDTEAQPGTGVPRTLTVSTARLHR 65 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD---YYWKDLMGCQVVTTEGYDL 124 Q ++ + DR A L ++ +D + ++E + +Y DL+G V G L Sbjct: 66 QIWLLGFAEIPDRTGAESLRGTQLFLDPDEADEVESDEDDGFYEHDLVGLAVQDPSGAVL 125 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+V ++ D+L ++ + ++ LVPF++ ++ ++D+ + VD G Sbjct: 126 GEVTGLVLGAVQDLLEVRLTNR-----RDVLVPFVEA-IVTEIDIEAGHVVVDAPAGL 177 >UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M790_9BACT Length = 172 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 9/175 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ---QVQLESWKHHN 67 D +V+ K+ +G++G +RV T+ E + G+ ++ Sbjct: 2 EDRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDGEEVGQYPLKNVGELRSK 61 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +I++L G+ D A L C I V ++ L EG Y+ +DL+G Q G LG V Sbjct: 62 GQIILELGGLSDAAEAEALRGCFICVPPDEMVPLPEGQYWIRDLVGLQAKDETGEVLGVV 121 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ TG++D+ I+ K+ LVPF+D Q I++V L R + + G Sbjct: 122 RDVLTTGASDIFEIE-----GLDGKKHLVPFVD-QFIRQVSLDRRELVISMMEGL 170 >UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT38_9FIRM Length = 177 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 8/171 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQ---VQLESWKHHNQDMI 71 + ++ +++GIRG L++ + T+ E F + +I K Q VQ+ H + Sbjct: 6 VARIVNTFGIRGQLKLIADTDFPEERFASGKTLYILKDLNSQPLASVQVAKAAIHKGTWL 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 I D+ + C + +D S+ +LEE YY L+G +VVT EG LGK+ +++ Sbjct: 66 ISFVDYDNINQVEGFKGCWLAIDESEQEELEEDSYYHHQLLGLEVVTLEGKTLGKIKEIL 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + GSNDV V++ N+ A K+ L+PF+ G V+K VDL ++V+ G Sbjct: 126 QLGSNDVFVVQRNIPKA---KDALIPFI-GDVVKTVDLEAGQVKVELMEGL 172 >UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P6R8_9FIRM Length = 185 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 17 GKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKG 76 GK+ +++G+RG +RV + + + ++ A Q +E + H +I+K +G Sbjct: 24 GKIVTTHGVRGEVRVQPWCDTPGFLTQFACLYL-DARGSQARVVERARVHKNIVIVKFEG 82 Query: 77 VDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETGS 135 V++ + A L + +D + + +LEEG+ + +DL+GC V + G D G+V D+ TG+ Sbjct: 83 VENVEDAAGLRGKTVYIDRADV-ELEEGECFVQDLIGCTVRDADTGADYGQVYDVRATGA 141 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 NDV ++ +ERLVP + V+ DL I + G Sbjct: 142 NDVYYLRD-----AAGRERLVPAI-ADVVLAKDLDAGIITIRPLEGL 182 >UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMM_SYNAS Length = 166 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQVQLESWKHHNQD 69 + +G++ S+G++G ++ S E+ E + ++ ++ + + ++ H Sbjct: 1 MKFFEIGEIVKSHGLKGRMKAKSYVENGEDLSSVHEAMIVKGKEEPRGYKVRKIVLHKTY 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++L+ +D ++A+ L +++ L +YYW+DLMG QVVT EG LG++ Sbjct: 61 FFLELETIDTVESADSLVGSTVLIPEDDRAALSGDEYYWRDLMGLQVVTEEGRFLGRIES 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TGSNDV V A G +E L+P + VI K+DL + + V PG Sbjct: 121 IFPTGSNDVYVC------AGGSREILLPAI-SDVILKIDLDKKEMVVRLLPGL 166 >UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Corynebacterium RepID=RIMM_CORGB Length = 171 Score = 152 bits (384), Expect = 6e-36, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 9/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMII 72 + +GK+ S+GIRG + V ST+D + F K AG+ + +++ + H +++ Sbjct: 7 LQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLV 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K V DR AA+ L + + +E +Y +L +V+ EG D+G+V +M Sbjct: 67 KFAEVPDRTAADSLRGTRFFAAPLE-DEDDEDGFYDHELESLRVIH-EGEDIGEVTGVMH 124 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ++L ++ KE L+PF+ ++ +VDL + + G Sbjct: 125 GPAGEILEVRLTSG-----KETLIPFVHA-IVPEVDLEEGTATITPPEGL 168 >UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonella RepID=RIMM_BARBK Length = 191 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 10/166 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 ++L + +++GIRG + V + + + Y + K + ++ S + H ++I++ Sbjct: 12 VLLAVIRAAHGIRGDVVVNLLGAEPQRLKTYGVLYDDKG---RLYEIVSMRVHKNNVIVR 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KGVDDR A L ++ ++ Q L+ ++Y DL+G +V LG+V Sbjct: 69 FKGVDDRSTAEALKGVQLYIERDQFADDLDTDEFYQIDLIGLRVYDNTNQLLGEVSGFFN 128 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+ D+L ++ K L+PF + ++ + + + VD Sbjct: 129 FGAGDLLEVR-----LISHKTELIPFSKAA-VPEICVASGFLVVDP 168 >UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F050_9PROT Length = 182 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMI 71 + +G + ++G++G L VFS T A++I Y W+I K A + + H + M+ Sbjct: 6 LLHIGDILGAHGLKGALIVFSHTRPAQAIAGYSCWWIGKTAATAKAYPVRRCWQHGKRML 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG-YDLGKVVDM 130 +L+GV D D A L ++ V + + ++ +Y W++L+GC+V+ LG V + Sbjct: 66 AELEGVSDCDQAALFKKLKVWVPID-VVETDDDEYLWEELIGCRVIKEGTLEPLGTVTAL 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 E G+ D L+++ DA E L+PF++ V+ V+L I VD G Sbjct: 125 EEYGAQDNLLVQTP-DDAAEPGEWLIPFIE-DVVTDVNLDDCVITVDLPEGM 174 >UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMM_MAGSM Length = 177 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQDMI 71 + LG + ++G++G +RV S TE + IFD+ W++ Q Q+++L S + H + ++ Sbjct: 10 VTLGYVMGAFGLKGEMRVRSLTERPDGIFDHPVWWLFNPKQKTRQEMRLGSGRLHGKGVV 69 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDY---YWKDLMGCQVVTTEGYDLGKVV 128 L GV R+A L EI V S LP + W DL+GCQVV +G +LG+VV Sbjct: 70 ATLAGVTTREAVQALFGTEIQVPRSMLPDGGDDPGVDGIWADLIGCQVVEVDGTELGRVV 129 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +MM TG+NDVL+++ E+L+P+++ +V+ ++DL + I+V G Sbjct: 130 EMMATGANDVLIVR-----GGPEGEKLLPYIE-EVVVELDLDRQIIKVKLMEGM 177 >UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_RHOCS Length = 201 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 IV+ ++ ++G+ G +++ S T D ++F Y P + ++ +L + Sbjct: 4 RIVVAQILGAHGVHGRVKLKSFTADETAVFGYAP--LTDESGRREFKLRRTGTGKDHFLA 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ G+ ++AA+ L + ++ +LP E E ++Y DL+G VT + G + + Sbjct: 62 EVDGITGKEAADALRGTRLYIERDRLPAPEDEDEFYHADLIGLDTVTADDQPFGTIKAIY 121 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+ D+L I+ K +PF + +++ + V+ F Sbjct: 122 DFGAGDMLEIRH-----VSEKTVFLPFTKA-CVPVIEIAAGRVVVEPPANF 166 >UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Aurantimonadaceae RepID=Q1YDR7_MOBAS Length = 194 Score = 150 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +P++LG +G + GI+G RV S T D + Y P + + S + + Sbjct: 8 ENPVLLGVVGGAQGIKGECRVRSFTADPTDLGAYGPLVDASGNR---YTVLSARVAKNVV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQL-EEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ K V DR+ A L ++ VD S LP+ ++ ++Y +DL+G V T G +G V+ Sbjct: 65 VVRFKEVADRNHAERLNGRKLFVDRSVLPEPADDDEFYLEDLVGYAVETVAGDAVGTVIA 124 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW-DPGF 182 + + D++ I+ ++PF + I +D R + V+ G Sbjct: 125 FHDFNAGDIVEIRPTKGQT-----LMIPFSEAA-IPVIDAERRLMVVEPGPAGL 172 >UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZ72_ABIDE Length = 181 Score = 150 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--------KAGQWQQVQLES 62 + +G + S++G+ G ++VF +T+ + + FI K +V++E+ Sbjct: 2 ENYFRVGVLTSTHGLTGGIKVFPTTDCLDRFDSLKRAFIDLSSGKGTIKGNGMLEVEVEN 61 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 K+ I+ KG+D+ D +++V L EG++Y D++GC+V+T G Sbjct: 62 VKYFKNTPIVTFKGIDNVDLVAKYKGMDLLVAREDALPLAEGEHYVSDVIGCKVITDTGK 121 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G V +++ETG+N VLV+K N +KE +P + + + +++ ++V G Sbjct: 122 EYGVVSEVIETGANKVLVVKPNEAHKE-LKEFCLPHI-PECVLEINTEEGFVKVHIMKGL 179 >UniRef50_Q688X2 Os05g0566300 protein n=4 Tax=Poaceae RepID=Q688X2_ORYSJ Length = 304 Score = 150 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 22/191 (11%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFD--YQPWFIQKAG---QWQQVQLESWKHH- 66 +V+G + ++G+RG + V T+ + F + W +A Q ++ +L + H Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135 Query: 67 -NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDL 124 + I+ GVD D A + I+V P++EE + Y DL+G +V+ + G + Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRPKMEEDEIYSLDLVGMRVIVKDTGKLV 195 Query: 125 GKVVDMMETGSNDVLVI-------------KANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 G V + G+ D+L + N + +PF + ++ +D+ + Sbjct: 196 GTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAE-DIVPDIDMES 254 Query: 172 RSIEVDWDPGF 182 R + + G Sbjct: 255 REMWITPPKGL 265 >UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinomycetales RepID=RIMM_RHOE4 Length = 190 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQDM 70 +V+G++ S+GI+G L V T++ E F + + + +E+ + H+ + Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L+GV DR A+ L V+DSS+L ++ ++Y +L G +VV T+G ++G V++ Sbjct: 63 LLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGSVIE 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ + + ++L I+ + + E L+PF+ ++ V + + ++ G Sbjct: 123 VLHSAAGELLSIRRTGETS---GELLIPFV-AAIVTSVSIADGVVMIEPPEGL 171 >UniRef50_B2GFY3 Ribosome maturation factor rimM n=2 Tax=Micrococcaceae RepID=RIMM_KOCRD Length = 191 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 83/188 (44%), Gaps = 25/188 (13%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF---IQKAGQW--------------Q 56 + + ++G +G+RG + V T+D ++ F + G+ Q Sbjct: 3 VRVARIGKPHGVRGEVTVELFTDDPQARFAPGSVLSIQHARGGRRGQGSAADAREPLAVQ 62 Query: 57 QVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 + + + + ++ + + + DR+AA E+ + + LP LE+ +++ DL+G Sbjct: 63 SLTVTGHRWNKDVLVARFEEISDRNAAEAARGLELFAEVADLP-LEDDEWHQDDLLGLVA 121 Query: 117 VT--TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 V +G V +++ + D+L I G + LVPF++ +++ +VDL + Sbjct: 122 VDLTRGEARIGTVKALIQGSAQDLLEITPQG----GGRTVLVPFVE-EIVPEVDLDRGLV 176 Query: 175 EVDWDPGF 182 V PG Sbjct: 177 LVSPPPGL 184 >UniRef50_C2KW13 Possible 16S rRNA processing protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KW13_9FIRM Length = 174 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 83/176 (47%), Gaps = 16/176 (9%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-------WQQVQLESWKHH 66 + +G + +G++G ++VF +TE+ + +++ + + +++S + Sbjct: 5 LRVGTILKPHGLKGEMKVFPTTEEPRRFTQLKELILRRESKGLRDTSFSESRKIKSVRFQ 64 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++++L+G+D + A N +++ Q L + +++ D +G +V LG+ Sbjct: 65 GEFLLLQLEGIDSVEMAEKYRNVSLMIPREQALPLGDNEFFLGDYIGMEVYIEGKELLGE 124 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V +++ETG+N V ++ KE L+P + V+ ++ I + G Sbjct: 125 VKEVIETGANLVFSVEGKE------KEYLIPHIPP-VVYEI--KENRIAIHLMEGL 171 >UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halothermothrix orenii H 168 RepID=RIMM_HALOH Length = 170 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 7/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I +GK+ + G +G +RV T+ E + F+ + + + ++E + H + + Sbjct: 3 DKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFV 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 IIK +G+DD AA + I + + L EG Y+ +L+G +V T EG LGKVVD+ Sbjct: 63 IIKFEGIDDIGAALAYKDYFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDI 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TG D++ +K + K+ +VP +++ ++ I + PG Sbjct: 123 ITTGGTDIIKVKGD------KKDYMVPAAR-EIVVNINPDEEKIIIKPIPGL 167 >UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQ83_9PROT Length = 187 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%) Query: 7 AQAPVDP-IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 ++P D +V+G+ +G+RG ++ S TE AE I Y P + ++ L K Sbjct: 2 GKSPQDRMVVVGQFAGPHGVRGEFKLRSFTERAEDIVAYGPLYTEEGRILTASLLREVKP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 + + V + A ++ V LP +E +YY +DL+G +T G +G Sbjct: 62 --GLFLARAPEVKTPEEAAAFKGAKLSVPRRALPAPDEDEYYIEDLIGLTALTPSGEVVG 119 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +V + + G+ ++ L G L+PF D + VD + VD Sbjct: 120 RVRQVADYGAGPIIE----LAPVSGKGALLLPF-DRTHVPTVDFGASRLIVDPP 168 >UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomycetales RepID=RIMM_NOCSJ Length = 184 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-----GQWQQVQLESWKHHNQ 68 +++G++G +GIRG L + T++ E F + + ++V + S + H Sbjct: 6 VLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSARWHQS 65 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVD-SSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++ + V DR AA + + + +YY L+G G LG V Sbjct: 66 TLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGAALGSV 125 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ G+ D+L ++ ++ LVPF+ ++ +VDL R + + PG Sbjct: 126 TGLVHGGAQDLLTVRTP-----DGRDALVPFVKA-LVPEVDLAGRRVVIADRPGL 174 >UniRef50_B1VYW1 Ribosome maturation factor rimM n=20 Tax=Actinomycetales RepID=RIMM_STRGG Length = 198 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+ ++G ++GI+G + V T++ E + + +E+ + H+ ++++ Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTVEAGRVHSGRLLLR 62 Query: 74 LKGVDDRDAANLLTNCEIVVD-SSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +GV DR A L N ++ + EE ++Y L+ VV +G +G++ ++ Sbjct: 63 FEGVRDRTGAEALRNTLLIAEVDPDELPEEEDEFYDHQLIDLDVVLADGTGIGRITEISH 122 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 S D+ +++ E ++PF++ +++ ++DL + + PG Sbjct: 123 LPSQDLFIVERP-----DGSEVMIPFVE-EIVTEIDLEEQRAVITPPPGL 166 >UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synechococcus RepID=RIMM_SYNS3 Length = 187 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWK- 64 + D + +G + + G++G LR+ +++ E + ++Q K ++V+L + Sbjct: 12 PNSTNDWLPVGTLVGAQGLKGELRLNPASDFPERFTEPGTRWLQAKGSAPKEVELLEGRQ 71 Query: 65 -HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGY 122 +++LKGV++R +A L C ++V + P+L EG+++ DL+G + Sbjct: 72 LPGKSLYVVRLKGVNNRASAEALVGCTVLVPAKDRPELAEGEFHLLDLVGLEARLAGSDE 131 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTR 172 +G V +++ G ND+L IK N K LVPF++ ++ V L Sbjct: 132 PIGTVSNLIS-GGNDLLEIKLNSG-----KTVLVPFVEA-IVPDVQLEEG 174 >UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobacter violaceus RepID=RIMM_GLOVI Length = 181 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 11/173 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK---AGQWQQVQLESWKHHNQDM 70 + +GK+ ++ G+RG +RV +T+ AE + + + G+ ++Q Sbjct: 5 LEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDLF 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVD 129 + + +GV++R+AA L + + +++ P L G+++ DLMG +V + G +G+V D Sbjct: 65 VCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVSD 124 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 M G ND+LVI+ + G K +VPF+ ++ VDL IEV PG Sbjct: 125 MTRAG-NDLLVIRLS-----GGKTVMVPFVHA-LVPVVDLEAGRIEVVAIPGL 170 >UniRef50_B0JU07 Ribosome maturation factor rimM n=5 Tax=Chroococcales RepID=RIMM_MICAN Length = 192 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--KAGQWQQVQLESWK--HH 66 + + +G + + G+ G LRV S ++ E IQ + G+ +++ L + Sbjct: 3 ENWLEIGTIVAPQGLEGELRVLSVSDFPERFQKRGMRGIQGPQGGEIREITLLRGRELPG 62 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLG 125 +IKL+GV++R+ A L ++ + + P+L+ +Y+ +L+ +V G +G Sbjct: 63 KNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEKIG 122 Query: 126 KVVDMMETGSNDVLV---------IKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 VVD+ G ND+L +K + LVPF+ +++ VDL IE+ Sbjct: 123 VVVDIFWAG-NDILAVQLEANLASVKKKSPSSDSEARALVPFVK-EIVPLVDLKAARIEI 180 Query: 177 DWDPGF 182 PG Sbjct: 181 APPPGL 186 >UniRef50_C7LP63 16S rRNA processing protein RimM n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LP63_DESBD Length = 182 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQ 68 PV + LG++ +G+RG L + + +++ G+ + LE W+ H Sbjct: 8 PVKLVELGRVQKPHGLRGELCIEPYADSPFIFEGLTRVYLRLPGKKPKPCVLEGWRAHQG 67 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +I + RD A +++ LP L+E ++ +DL+G V+ G +G + Sbjct: 68 RALITVDRSQGRDQAEAWRGADVLARERDLPPLDEDEFRPEDLLGLPVMHVNGSRIGVLE 127 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ + ++ I + + E ++P +D + I +DL I VD G Sbjct: 128 DIRDVAGQELWFILDDAGN-----EIMLPAVD-EFILDIDLEAGVILVDPPDGL 175 >UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IJE3_CLOBU Length = 166 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 12/163 (7%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLK 75 +G++ +++GI+G ++V+ TED + + ++ + K +I+K++ Sbjct: 8 IGQIINTHGIKGEVKVYPLTEDVNKFKRLKTVLVGG----VEMNILGVKFQKDRVILKIE 63 Query: 76 GVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGS 135 G+D + A I + + P+L E YY DL C V T+G +LGK+ D++ T + Sbjct: 64 GIDTMNDAETYKQKYIEIPREKEPELPEDTYYVSDLKECIVYDTDGKELGKIFDVISTRN 123 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 NDV IK KE L+P + ++ +D+ + I + Sbjct: 124 NDVYWIKEP-------KELLIP-VLRDIVLSIDINEKKIVIRP 158 >UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XN47_HIRBI Length = 193 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES 62 + ++A +D +V+ ++G ++G+RG +RV S T AE F Y P + +S Sbjct: 2 RDEQSKASLDLVVVAQIGGAHGVRGHVRVRSFTVVAEDCFAYGPLLDENGD--VIFTAKS 59 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 ++ + ++ R+ + + V + LP+ EE ++Y++DL+G +VV +G Sbjct: 60 YQENKDGFVVWPVENRQREEWMAMKGVLLHVPRNALPEPEEDEFYFEDLIGSKVVHEDGR 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +LG+V+++ G++D+L +K+ + ++PF ++I KVD+ + + + Sbjct: 120 ELGQVLNVHNFGADDLLELKSPHG-----TDYMLPFT-LEIIPKVDVKAQLLTAKPEE 171 >UniRef50_B4WHU3 16S rRNA processing protein RimM n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WHU3_9SYNE Length = 229 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 50/219 (22%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-QWQQVQLESWKH--HNQ 68 D +++G++ ++G+ G ++V+ ++ E + +I+K G +QL S ++ Sbjct: 9 DWLLIGRIVGAHGLNGHIKVYPESDFPERFIEPGERWIEKPGANPTPIQLISGRYLEGKN 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKV 127 ++KL G+D RD A L+ ++VV + G+++ DL+G +V+ + +G + Sbjct: 69 IYLVKLAGIDFRDQAEDLSGAKLVVPVGDRLPVAPGEFHVSDLIGLRVILQSDQTAIGTI 128 Query: 128 VDMMETGSNDVLVIKANLKDAFGI------------------------------------ 151 ++ TG +D+L + ++ Sbjct: 129 TNVFTTG-HDLLEVSLPTAESTSDLDTASKRTEPERALSLESKHHPSLRSKAAQKLRRKA 187 Query: 152 --------KERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 K L+PF++ ++ VD+ +E+ G Sbjct: 188 RRAKKKQTKTLLIPFVE-DIVPVVDVLAGRVEITPPAGL 225 >UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococcus xanthus DK 1622 RepID=RIMM_MYXXD Length = 188 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 94/177 (53%), Gaps = 9/177 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESW 63 +TA +P + LG + ++G+RG + + + +E++ +++ +AG ++++LE+ Sbjct: 1 MTATSP--YLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEAL 58 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + ++ I+ L+GV+ R+ A L ++ V L EG+++ DL+G V G Sbjct: 59 RPTPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNA 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG+V ++ TG LVI+A+ G +E +VPF D + + VDL R I + Sbjct: 119 LGRVEEIWTTGEVPNLVIRAS-----GREELVVPFAD-EFVPTVDLEARRIVIHPPE 169 >UniRef50_C1TLS3 16S rRNA processing protein RimM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLS3_9BACT Length = 177 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 11/177 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW----QQVQLESWKHH 66 D + +GK+ + +G++G +VF T+ + + + ++ Sbjct: 4 DDLVEVGKVIAPHGVKGEFKVFPLTDFPDRFESMDELNLYDGKGRFIKAVPISSVRFRPD 63 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLG 125 +++I + DRD A L I V Q L EG+Y+ DL+G V+ G +G Sbjct: 64 KGEVMITSPKICDRDEAESLRGLLIKVSKDQRRDLPEGEYWIDDLIGLSVIDEGSGETIG 123 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+M TG +DV +K + ++P + G+ + VD+ + ++V G Sbjct: 124 TLCDVMVTGGSDVYTVKRP-----DGRNMMIPAV-GEYVSSVDIASGVLKVKNIEGL 174 >UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasma phagocytophilum HZ RepID=RIMM_ANAPZ Length = 171 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I+LG + +++G+RG +++ + T D I Y P + + +V + S N +I Sbjct: 7 FILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGP--LTDGSESLKVSVMSV-IKNGCVIA 63 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K+ G+DDR +A L N ++ V SS LP+L+ ++Y +L+G V + G V ++ Sbjct: 64 KISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVFN 123 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GS D++ I K+ + F +D+ TR + + Sbjct: 124 FGSGDIVEISTPQG-----KKEMFSFTSNIF-PSIDMKTREMTIVPPE 165 >UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyoglomus RepID=B8E2G5_DICTD Length = 166 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQD 69 + + K+G +GI+G ++++ + +++ Q ++ +++ LE+ + HN+ Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIDTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I ++ R+ A + ++++ LP+L EG YY +MG V G LGKV + Sbjct: 61 YVIYFSEIETREDAEKIRGNWLLIEEEDLPKLPEGQYYTYQIMGLSVYEESGEYLGKVKE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 ++ETGSNDV +++ +D + +P + ++ +++L I + Sbjct: 121 ILETGSNDVYIVEGEDEDIY------IPAIKDVIV-EINLDEGKIII 160 >UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMM_PETMO Length = 185 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQV--QLESWKHHNQ 68 + I + K+ +S+G+ G +++ T + I + + + ++ K N+ Sbjct: 9 DNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLNK 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ L+G+ D D A + E+ +D LP L +YYW +++ +V +G +GKV Sbjct: 69 FFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDGEYVGKVE 128 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 ++++TG+NDV+ IK D KE L+P D +I ++ +SI V Sbjct: 129 EIIQTGANDVISIKNLEDD----KEVLIPMTDHYII-ELKKEDKSIIV 171 >UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RIMM_PELCD Length = 175 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVF-SSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D ++LG + ++G+RG L++ S + +Q F+++ + + + Sbjct: 7 DLLILGVVIGTHGLRGDLKIRGSDQDFPLLSKMHQLVFLREGETVLKCARRKAGWYKGHL 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++++ G D A L CE+ V +P L G+YYW L G V LG + D+ Sbjct: 67 LLQIAGYRDVRAVQHLVGCEVAVRRDDVPGLPAGEYYWFQLKGMTAVDRRLGALGCLEDI 126 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T ++D+ VI + E LVP + I VDL + I D G Sbjct: 127 FTTAAHDIYVINGDYG------EVLVPAVKA-FIADVDLESNRILFDLPDGL 171 >UniRef50_D0WR63 16S rRNA processing protein RimM n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR63_9ACTO Length = 192 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 6/169 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + +G+ +G++G LR+ T+ E + + + + + + Sbjct: 3 LTVAVIGAPHGLKGELRLDVRTDQPERRLGIGAMLETDPQEAGPLTVARTREYKGAIYAM 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 DR A L ++ V++ + +EE +Y +L+G +V+ EGY+LG+++ + Sbjct: 63 FSECTDRTMAERLRGVKLTVETDEDDYVEEDAFYEHELVGLEVLDPEGYELGRIIGLETF 122 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+LV++ D VPF+ +++ +VDL + V G Sbjct: 123 PAQDMLVVREPDGDVAR-----VPFVR-EIVTEVDLDDNCVVVRAPQGL 165 >UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostridium RepID=C5RHQ2_CLOCL Length = 164 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 V+ + +G + + +G++G +V T+D + FI+ ++ + K Q + Sbjct: 2 VEFLAVGIITNVHGLKGEFKVKPLTDDIRRFNKLKKVFIKG----KEYNVSWCKLQPQKV 57 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+K++G+D + A N + VD +L EG Y+ DL+GC VV G D G + D+ Sbjct: 58 IVKVEGIDTVEEAMRYKNEYMQVDRENAIKLPEGRYFVADLIGCNVVDHNGKDEGVIKDV 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + TGSNDV G ++ L+P +D V+ +D+ R I + Sbjct: 118 IFTGSNDVYW-----SIREGREDLLIPVIDP-VVDTIDIEKRVITIQPVE 161 >UniRef50_C3RL40 Ribosome maturation factor rimM n=4 Tax=Bacteria RepID=C3RL40_9MOLU Length = 169 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQD 69 ++ + +GK+ ++G++G L++ S+++ A+ F I+ Q ++ + + H + Sbjct: 1 MEKLKIGKIVGTHGLKGELKIRSNSDFADKRFKKGNEIIIRYQNQDLVYKIITSRIHKGN 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ + D + + L+ +Y++ DL+G QVV+TEG +G V Sbjct: 61 YLVSFRDNQDINLVEKYIGSFVYGYKDDEL-LDADEYFYTDLIGMQVVSTEGTKIGPVTS 119 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + +D+L I N K +P++D IK VD+ + I V G Sbjct: 120 IYDNTRHDILNIDHN------GKNVAIPYVDA-FIKDVDVEKKIIVVMLIKGL 165 >UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingomonadales RepID=RIMM_ERYLH Length = 169 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 7/154 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH-HNQDMI 71 P+ L + ++G+RG +R+ E E++ + + + L+S + + I Sbjct: 6 PLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSF------NEGTLTLKSVRSDNKGGAI 59 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + V R+ A L + V LP LEEG+YY+ DL+G VT G +GKV+D+ Sbjct: 60 ARFAEVQGREQAEKLRGTTLTVPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVH 119 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIK 165 G+ D++ I + G+K +VP V++ Sbjct: 120 NYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVE 153 >UniRef50_Q72DU2 Ribosome maturation factor rimM n=6 Tax=Desulfovibrio RepID=RIMM_DESVH Length = 176 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 10/172 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMI 71 I +G + +G++G + V + +++ + V+++S + H + Sbjct: 6 FIEIGLLTRPHGLKGEVCVDYYADSP--FLLEGTVYLKAGRAAPRPVKVQSMRMHKGRPL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYDLGKVVDM 130 + +GV+DR AA LL ++V LP+L+E + Y +L G VV G LG + + Sbjct: 64 VIFEGVNDRTAAELLRGHVMLVPEDTLPELDEDEVYLFELEGISVVIDESGEHLGVIERI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ VI+ KE L P + +DL +R+ + PG Sbjct: 124 DTDAYQEIWVIRTPQG-----KEVLFPA-AAPFVLDIDLDSRTARIAPPPGL 169 >UniRef50_A3HW20 RimM n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW20_9SPHI Length = 176 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH-NQDMIIKL 74 LG + +G+RG + V T++ E D + F+++ + LE + ++ K Sbjct: 9 LGYVAKVHGLRGEVVVVLDTDNPEDYEDLEHLFLEQKSRLVPFFLEHFVLQPGNKVLAKF 68 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 + D + A L E+ + + LP+LE+ YY+ +L+G +V +G V + + Sbjct: 69 EDYDSLNQAEELVGSEVYLPLTALPELEDDQYYFHELIGFEVFDETIGLIGTVQVVYDLE 128 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+L + KE L+P + +I++VD T + + G Sbjct: 129 TQDLLGVTHQ------GKEVLIP-IQDGIIQEVDKTAKKVFCHLPEGL 169 >UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4R6_CHLAD Length = 169 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQVQLESWKHHNQD 69 D + +G +G+ +G+RG +++ S + E + + FI QV + H Sbjct: 2 DDLLYIGVLGAPFGVRGQIKLHSISSHPEHLIRHLRTVFIGPKRIPHQVT-RLFLHKPGL 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +II+L+ V DRDAA+ L E+ + ++ L E ++++ DL+G VT G +G+V D Sbjct: 61 LIIQLQSVTDRDAASDLRGAEVYIAAADAAPLGEDEFFYHDLIGLAAVTDTGDLIGEVRD 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+ ++ VI G + LVP + ++ +DL R + + G Sbjct: 121 VLETGAGEIAVIARR-----GRADALVPMVRDFIV-AIDLVERRLVIRPIDGL 167 >UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUD1_9CLOT Length = 171 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 10/166 (6%) Query: 17 GKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKG 76 GK+ + G+RG +RV + AE++ + + ++ Q ++++ S + + I+KL+G Sbjct: 9 GKITGTQGLRGEIRVDPWCDSAEALCRLKRLYFEEGKQ--ELKVVSARTQKRMAILKLEG 66 Query: 77 VDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMMETGS 135 VD + A+LL N + +LE G Y+ +DL+G + V + G D G V D+++TG+ Sbjct: 67 VDSIEQADLLRNRVLYASRQDF-KLEPGRYFIQDLLGVKAVDADSGRDYGAVTDVLKTGA 125 Query: 136 NDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 NDV I + K L+P + VI ++ L + + G Sbjct: 126 NDVYEITGD-----DGKAYLLPAIPMTVI-EIRLEEGLMRIRPIEG 165 >UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGD2_9SPHI Length = 177 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 6/172 (3%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D +G + +YG++G + +++E + + F+ K +E + + Sbjct: 4 EDCYEVGYIAKTYGVKGEIHAVFDVDNSEEYREIESIFVVKDRHMVPYFIEQVRFVQGYV 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +K + +DD D A +L ++++ LP+ EE +YY+ D++G VV + ++GKV + Sbjct: 64 RLKFEEIDDVDQAKMLVGSKLMLPIDVLPETEEEEYYFHDILGYMVVDADKGEIGKVTQL 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ + D++ + KE L+P++ Q+I+K+D + I V G Sbjct: 124 YDSTNQDLIGVTHQ------GKEVLIPYIKDQIIQKLDHEQKVIVVTLPGGL 169 >UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseiflexus RepID=RIMM_ROSS1 Length = 182 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHH 66 + + +++GK+ ++G+RG +++ + T+ + + + + F+ + + +Q + Sbjct: 6 PSADEVLLIGKVIDAFGLRGEIKIRAITDQVDHLRRHVRTVFLGEERRPFTLQ-RVHEPK 64 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I+ L GV DR A L E+ + L++ +Y+ L G +V+ + G ++G Sbjct: 65 AGILILSLGGVTDRTTAEALRGAEVTIRECDAAPLDQDEYFIHQLYGLRVIESGGGEIGV 124 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++++TG+NDV+V++ G + L+P + V++++D+ I V PG Sbjct: 125 VREVVQTGANDVIVVERQ-----GRSDTLLPMIH-DVVERLDVAAGQIVVRLLPGL 174 >UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylobacterium RepID=RIMM_METRJ Length = 231 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 7/173 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN-QDM 70 + ++LG+ G ++G+ G +R+ S T D ++I Y + + + Sbjct: 51 NLVLLGEFGRAHGLTGEVRLKSYTGDPQAIAGYGALQTSDGRTLALADVRPAPGSSPDML 110 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I ++KGV R AA L + V +L E + + Y DL+G V G +G +V Sbjct: 111 IARVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEAGTLVGTIVA 170 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G D+L ++ G L+PF + +D+ R + V Sbjct: 171 VPNYGGGDLLELRPPN----GGATALLPFTKA-FVPVLDVAQRRVTVAAPEDL 218 >UniRef50_D1NUF5 16S rRNA processing protein RimM n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUF5_9BIFI Length = 215 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 17/186 (9%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +D + + ++G + G++G + V S T++ E F+ K G+ Q +E + Sbjct: 20 MDLLRVARVGRAQGLKGEVTVQSFTDEPEYRFEPGSELYTKDGE-QTFVVERSRSMKNRW 78 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVV--------TTEG 121 I+K +GVDDR AA + + ++ LEE +Y KDL+G +V E Sbjct: 79 ILKFEGVDDRTAAEAINGTVLYGEADDAEDMLEEDVWYAKDLVGLEVRMAPDNLLGLEED 138 Query: 122 YDLGKVVDMMETGSNDVLVIK--ANLKDAFG---IKERLVPFLDGQVIKKVDLTTRSIEV 176 +GKVVD+++ G +L ++ ++DA G K LVPF++ Q++ ++D + + Sbjct: 139 RLIGKVVDVID-GPQWLLKVRLAEPVRDADGVVVEKTALVPFVE-QIVTEIDPEQQVALI 196 Query: 177 DWDPGF 182 + G Sbjct: 197 NPPGGL 202 >UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C5BWW9_BEUC1 Length = 182 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 11/178 (6%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +++ D +VL ++G++ G+RG +R+ T+D E+ + + + Sbjct: 1 MSSTDQDDDVVLARLGAALGLRGEVRLTVRTDD-ENRLAPGTKVRTDPPAAGPLTIARLR 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +I + DR AA L E+V + P++++ +Y ++L+G + VT +G+ L Sbjct: 60 RTGAGYVIAFAEIADRTAAEALRGVELVAE----PRVDDDAWYPRELVGLEAVTPDGHVL 115 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+VV + ++DVLV+ LVPF+ ++ VD+ + VD G Sbjct: 116 GEVVAVEHPPAHDVLVVVEPSG-----AHALVPFVTA-LVPSVDVAAGRVVVDPPGGL 167 >UniRef50_Q6NGI4 Ribosome maturation factor rimM n=1 Tax=Corynebacterium diphtheriae RepID=RIMM_CORDI Length = 166 Score = 142 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-QKAGQWQQVQLESWKHHNQDMII 72 +++G++ S+GIRG + + +TE+ E F ++ G+ + + S + H +++ Sbjct: 3 LMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLV 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K K + DR AA+ L L + +Y +L G V+ E +G+V ++ Sbjct: 63 KFKEIADRTAADSLRGTRFFAAP--LDDDVDDGFYDHELEGLAVIHGE-EKIGEVSGVIH 119 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +L + KE L+PF+ ++ +VDL + + G Sbjct: 120 GPAQSLLEVTLESG-----KEVLIPFVH-DIVPEVDLDAGTCVITPPEGL 163 >UniRef50_A2C552 Ribosome maturation factor rimM n=8 Tax=cellular organisms RepID=RIMM_PROM1 Length = 176 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWK--HHNQDMII 72 +G++ + G+RG LR+ S++ E +IQK + +++L K ++ Sbjct: 10 IGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKLIPGKSIYVL 69 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT-TEGYDLGKVVDMM 131 ++GV R +A + ++V+ P L + +Y++ DL+G + + +G V D++ Sbjct: 70 SIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALIGYVTDLI 129 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G ND+L I+ K+ LVPF+ +++ ++++ + + ++ PG Sbjct: 130 K-GGNDLLEIE-----LVEGKKVLVPFVK-EIVPEIEIKEKWLLINPPPGL 173 >UniRef50_C1F3B3 Ribosome maturation factor rimM n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RIMM_ACIC5 Length = 213 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 12/175 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ----WQQVQLESWKHHNQD 69 + L + G RG + T+ E + + F+ + ++++L ++ Sbjct: 7 VTLAHIVRPQGRRGEVIAELLTDFPEKFAERRHVFLTRDAASDAAPREMELAGYRLAQNR 66 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKVV 128 +++ G+D DAA +L ++V+ S+ L++ Y DL+GC V G +G V Sbjct: 67 VVLHFAGIDSIDAAEMLRGLDVVIPESERAPLDQDAAYISDLIGCDVWDEAAGQRVGIVQ 126 Query: 129 DMMETGSN-DVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ S+ D+LV+ +PF+ ++K +D T + I + G Sbjct: 127 DVDRQASHVDLLVVDCENGQRAE-----IPFVKAFLVK-LDTTGKRITMRLPEGL 175 >UniRef50_C7NGX6 16S rRNA processing protein RimM n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGX6_KYTSD Length = 182 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 S + P + L ++G + ++G + V T++ E + + + Sbjct: 5 SNRERGSIPEGMVRLARIGKPHALKGEVTVQLHTDEPEVRLAVGTAVQTVPAEEGPLTIA 64 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 S + H ++ + V RD A L +V + + +L+ +Y +DL G +VV +G Sbjct: 65 SRRVHQGVTLLGFEQVTGRDGAEALRGVVLVAPADE--ELDGEGFYPEDLRGLEVVDGQG 122 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG V D+ + D+L + + LVPF++ +++ VDL + V G Sbjct: 123 EPLGAVKDLHLRPAQDLLEVTTTAGH-----DVLVPFVE-ELVPHVDLEAGQVTVTAPAG 176 Query: 182 F 182 Sbjct: 177 L 177 >UniRef50_C7MB75 16S rRNA processing protein RimM n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB75_BRAFD Length = 194 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 81/172 (47%), Gaps = 9/172 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWKHHNQDMII 72 +++ +G ++G+RG + + T+ E F ++ AGQ + + ++S + + Sbjct: 6 VIVATIGRAHGLRGEVALTLRTDQPEERLQPGTAFEVEVAGQVRALTVQSTRMQQDRWYV 65 Query: 73 KLKGVDDRDAANLLTNCEIVV--DSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + + VDDR A L ++V+ D+ Q + + +Y L G V +G +LG V + Sbjct: 66 RFEEVDDRTGAASLRGIDLVLSLDAEQEAEEDPDAWYPAQLKGLSVRHVDGRELGTVAGV 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+LV++ + + +P ++ +++ +VDL + D G Sbjct: 126 DHYPAQDLLVVRTPDR-----RRVQLPLVE-ELVPEVDLEQGVVIADPPGGL 171 >UniRef50_C4XKL9 Probable 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKL9_DESMR Length = 184 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 13/176 (7%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ---KAGQWQQVQLESWKHHNQDM 70 I++G + +G+RG L V S + + G+ + + + + H + Sbjct: 7 IIVGVVARPHGVRGELVVDSHADSPTYFARGSTLRLSPPSDPGRGRDYVVRAARPHQDRI 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE----GYDLGK 126 +I L V DR AA+ L I V + +L E + + DL G +V + DLG Sbjct: 67 LITLDNVPDRTAADALRGLAICVPADRLVAAAEDEVFLHDLPGLRVRLADAAPTDPDLGV 126 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+ + G ++ VI+ +E L P D + VDL + +D PG Sbjct: 127 IEDVRDYGGPEIWVIRD-----AKGREILFPATD-DFVPDVDLDAGVVTIDPPPGL 176 >UniRef50_C2KRG1 16S rRNA processing protein RimM n=3 Tax=Mobiluncus RepID=C2KRG1_9ACTO Length = 196 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 20/184 (10%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + + +G + G+RG +RV T++ + F + + ++ ++ +H + + Sbjct: 2 KVTVATLGRASGVRGEIRVALRTDNPHTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFVA 61 Query: 73 KLKGVDDRDAANLLTNCEIVV---DSSQLPQLE-----------EGDYYWKDLMGCQVVT 118 K + DRD A L ++V+ + P E +Y +L+G T Sbjct: 62 SFKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQT 121 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G LG V D++ + D+L + + L+PF+ +++ +VDL + + Sbjct: 122 QTGESLGMVSDLIIGTAQDLLEVTT-----ADGHKVLIPFVF-ELVPEVDLAAGRVVMAP 175 Query: 179 DPGF 182 G Sbjct: 176 PGGL 179 >UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SQK6_PHYPA Length = 200 Score = 142 bits (358), Expect = 8e-33, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 11/182 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQK----AGQWQQVQLESWK- 64 D + +G + ++G+ G LR+ SST+ E F+ +I+K +V+L + Sbjct: 1 DDFVEIGIVAETHGVYGELRIRSSTDFPEERFETPGTRWIKKMRMGKPSITEVELIEGRE 60 Query: 65 --HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEG 121 +++LKGVD + A+ +++ + + P LEE + Y DL+G VV E Sbjct: 61 TIGKQTSWLVRLKGVDTLEKASEFQGATMLIRADERPVSLEEDEDYIPDLLGMDVVIQET 120 Query: 122 YD-LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + +G +VD+ +G++D+L ++ +PF+ +++ VD+++ +E+ Sbjct: 121 KETIGTIVDVHNSGASDLLRVQLTKPIRGKDVRIWIPFVK-EIVPVVDISSNRVEISPPD 179 Query: 181 GF 182 G Sbjct: 180 GL 181 >UniRef50_Q4BZC6 RimM protein:PRC-barrel n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BZC6_CROWT Length = 190 Score = 142 bits (358), Expect = 8e-33, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 12/179 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHH--NQD 69 + +G + + G+RG L+V SST+ E + +++ + ++L S K Sbjct: 9 LEIGTIVAPKGLRGELKVLSSTDFPERFKNPGKRWLKSPQNASLEPIELISGKPVAGKNI 68 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVV 128 I++L+G+++R+ A L ++++ P+L E +Y+ L+ V G +G VV Sbjct: 69 YIVRLQGIENRNQAENLRGHKLLILDETPPKLSEEEYHVSQLIDLDVYDQNTGKMIGNVV 128 Query: 129 DMMETGSNDVLVIK-----ANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ G +D+L IK K+ VPF+ +++ VDL IE++ G Sbjct: 129 DIFSAG-HDLLEIKLITDTETEVKHKKEKKVFVPFV-YEIVPVVDLEQHKIEINPPIGL 185 >UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXJ7_CHLT3 Length = 168 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 7/167 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQD 69 ++ V+G++ S G++G ++V T+ ES + + +++ K +VQ+ + K H Sbjct: 1 MNLFVVGEILKSRGLKGEVKVRVITDFPESFLERKSYYLGKTERDAHKVQVLAAKIHKGF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + L GVD ++A+LL + VD SQL +++ Y +L+G V+ LG++VD Sbjct: 61 AFLLLDGVDSVESADLLKGQFLFVDESQLMRVKGDFAYLHELIGLAVLDENEKLLGRLVD 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 + S DV I+ K ++ L+P +D ++K VD+ + + V Sbjct: 121 LQHMPSCDVYEIETADK-----QKVLIPAIDDFIVK-VDVENKRVTV 161 >UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMM_HYPNA Length = 181 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 7/164 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I +G + ++G+RG +RV S T D +++F Y P + + + I+ Sbjct: 10 LIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLM--DEAGKVLLTPITARPGKDHFIV 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + K ++ + L C + QLP+ +E ++Y++DL+G V T +V + Sbjct: 68 RPKENLQKEDWDALRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQN 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 GS D+L I+ A VP + +D+ I + Sbjct: 128 FGSGDLLEIEIPGAPAT----IYVPLTRAD-VPVIDMAAHRIVI 166 >UniRef50_A0JXU0 Ribosome maturation factor rimM n=4 Tax=Micrococcaceae RepID=RIMM_ARTS2 Length = 197 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + ++G +GIRG + V T+ E F F+ + + ++S + + +++ Sbjct: 3 LQVARIGKPHGIRGEVTVQVLTDAPEDRFIPGTRFVVEPASAGPLTVDSARWNKDILLLG 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G++ R+ A L ++ +++ +L + ++ +Y +L+G V +G + + Sbjct: 63 FEGIETRNQAEALRGAKLFIETEELEEEDDEGWYEHELVGLDVR-VGDAVVGTISGLRTL 121 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++V+++ KE L+PF++ +++ +V++ + I V PG Sbjct: 122 PVQDLIVVESP-----DGKEILIPFVE-EIVPEVNVGEKYILVTPPPGL 164 >UniRef50_B0S046 Ribosome maturation factor rimM n=2 Tax=Finegoldia magna RepID=RIMM_FINM2 Length = 162 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 ++ I + ++ +++GI+G L++ T++ E + +++ + +V +++++ + + Sbjct: 1 MEYIAVAEVLNTHGIKGCLKMRPLTDNIERFDEDICYYL--GDKKVKVTIQNYRMYKGFL 58 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I + +D + + +D +L++G +Y DL+G + G +G +VD+ Sbjct: 59 YIDFEEFNDINEVLGFKKQYLYIDEKDRYELKDGSFYIDDLIGLKAY-FNGEYIGDLVDV 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + SNDV VIK + KE ++P + + IKK+DL I+V G Sbjct: 118 ISIYSNDVYVIKNDE------KEFMIPAVK-EFIKKIDLENGLIDVVIIEGM 162 >UniRef50_UPI000196BAC6 hypothetical protein CATMIT_00493 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAC6 Length = 167 Score = 140 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 11/173 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQD 69 ++ + +GK+ +++GI+G L++ SST+ E F ++ ++ ++ H Sbjct: 1 MELVEIGKIINTFGIKGDLKIASSTDFGEQRFAPGSHILVKTPREYLDFEISKHYIHKGF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I KG D + C L EG +Y D++ C+V G +GKV D Sbjct: 61 DMIAFKGFTDINEVEKYKGCICYAPKDTSL-LPEGMHYISDIVDCEVYN-NGTYIGKVTD 118 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + G+ ++ + N K+ ++P++D +K D+ + I+V GF Sbjct: 119 VYQ-GAQAIIGVDVN------GKQVMIPYIDA-FVKNKDIEHKRIDVSLIGGF 163 >UniRef50_C0GQX6 16S rRNA processing protein RimM n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GQX6_9DELT Length = 178 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 74/172 (43%), Gaps = 7/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D + GK+ +G++G + + + + + +++ G+ + ES + H + Sbjct: 5 DLLTCGKVVKPHGLKGEICIIWYADSPLLLKKAEKIYLRMPGKRPRAFTPESSREHGSRL 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +++L+ + RD A EI+ DS LP+ ++ + Y +L+GC V G LG + Sbjct: 65 LLQLEQITGRDQAEKWRGAEILADSKDLPRDDDNEIYLHELLGCSVFLDSGEYLGVLQGF 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + +V I +E L P + + I +D + + G Sbjct: 125 VPRKNGEVWEIVDEKG-----REILFPA-EDEFIVHLDPEAKKAVISPPGGL 170 >UniRef50_A6NV55 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NV55_9BACE Length = 167 Score = 140 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 87/171 (50%), Gaps = 13/171 (7%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + G++ +++G++G +++ + E + + +I Q V++ S + H +++ Sbjct: 5 FLEAGQIVNTHGVQGEVKIVPWCDSPEFLCQFDVLYIDG----QPVRIRSSRVHKGNVLA 60 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMM 131 L+GV D +AA L ++ +D + + +L +G ++ DLMG +V + LG++ D++ Sbjct: 61 TLEGVSDVNAAMRLKGKKVSIDRTGV-ELPDGRHFLADLMGLEVRDADTDEVLGEIKDIL 119 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++V V+K G L+P +D + +K+ ++ I V G Sbjct: 120 TPPAHEVYVVKG------GAHSYLIPAVD-EFLKETNVEGGYIRVHLIEGM 163 >UniRef50_C8X433 16S rRNA processing protein RimM n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X433_DESRD Length = 182 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMI 71 + +G++ G+RG + + + + ++Q + + + + S + H + Sbjct: 6 LVPIGRIAKPLGLRGEVCLEPHADFPFVFASLERIYLQFERRRPKPYAVLSHRVHKGRDV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L G++ RDAA + E++ + LP+ ++ +DL GC+V +G +G+V+++ Sbjct: 66 LLLHGIEGRDAAESIRGREVLARARDLPEPDDAVLLRQDLPGCRVELEDGAWVGEVLEVQ 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + DV VI +E L P + + VDL R + + G Sbjct: 126 DNRAQDVWVILGPQG-----QEILFPVCEA-FVLDVDLERRVVVIRPPEGL 170 >UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJ48_9DELT Length = 184 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQD 69 D + +G++ GI+G +++ + +Y + +L + + Sbjct: 12 DDLLAVGRVVKPQGIKGEIKIVPYSGRPADFREYHRLWPADGEAPGGGWELLATRESGGA 71 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I +L G+ DRDAA L + + S LP G+ YW L G +G ++G VV Sbjct: 72 VIARLAGIADRDAAEALRGRPLAIRSRDLPPAPAGELYWHQLQGLPARDEQGREIGTVVG 131 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRS---IEVDWDPGF 182 ++ T + +VI +E LVP + + ++ + + PG Sbjct: 132 LLATPARPTMVIAD-----GAGREILVP-VHAEFMQYQPAAVGRAAFVLLTPPPGL 181 >UniRef50_C5SJF8 16S rRNA processing protein RimM n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SJF8_9CAUL Length = 180 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 87/170 (51%), Gaps = 9/170 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + + ++ +S+G+RG ++ S +D S+ +Y P + + + + + H ++ Sbjct: 3 ELVFVAQVAASFGVRGEFKLISHMDDPLSVLEYNPLY--NPRGEPALVITAARVHKGALV 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +K +G+ D+D A+ L ++ V LP++E E D+Y DL+G +V +T+G +G++ + Sbjct: 61 VKAEGISDKDKADALKGLKLYVRREDLPEVEDEDDFYITDLIGLEVRSTDGSVIGRLKGV 120 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D+L I+ ++ + + + +V++ + + Sbjct: 121 EDFGAGDLLDIQPKGGASYYL------MFTRENVPEVNIGAGYVVISPPQ 164 >UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYR2_9DELT Length = 185 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 8/165 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQV 58 M T + + +G++ G++G L+V + F+ G Sbjct: 1 MRIIFTGARRGELVEIGRIVKPQGVKGELKVLPLAGAPLDFSGLEELFLLPASGGPPLAY 60 Query: 59 QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 L + + ++I+L GVDDR+ A L + + + + +LP L D YW L G T Sbjct: 61 PLLAVRSQGGALVIRLAGVDDRNQAEALRDRVVALAAGELPPLAPDDIYWHQLAGLAAYT 120 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQV 163 EG +G V D M T ++ +LVI +E LVP + + Sbjct: 121 AEGRKVGLVTDFMLTAAHPLLVIVDEQ-----HREYLVP-VHPEF 159 >UniRef50_Q1MQV0 Ribosome maturation factor rimM n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=RIMM_LAWIP Length = 173 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 10/172 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMI 71 + +G + +GI+G +R+ T+ + F+QK+ ++ ++ S + H + Sbjct: 5 LVAVGVLSRPHGIKGEIRLIRYTDSIDVFL--GEVFLQKSNSLPKKAEIISSRIHQGVAL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYDLGKVVDM 130 + KG DR A +L ++V S LP++E + Y DL+G VV +GK+ + Sbjct: 63 VCFKGFSDRSAVEVLRGQTLLVSRSFLPEIESNESYLCDLLGFSVVLDNTDEVIGKLEYV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G ++ I KE L+P + + + +VD + I ++ G Sbjct: 123 SFPGGQELWSIITPEG-----KEVLLPAI-PEFVLEVDTNAQLIRINPPKGL 168 >UniRef50_B3DTN1 Ribosome maturation factor rimM n=19 Tax=Bifidobacteriaceae RepID=RIMM_BIFLD Length = 199 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 20/190 (10%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 ++ + + ++G + G++G + V T+D E F+ + G+ + + +E + Sbjct: 8 LELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYI-VEGSRTFKDRW 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTTEGYDLG---- 125 I+KL+GVDDR+AA L E+ ++ LE ++Y KDL+G + EG LG Sbjct: 67 ILKLEGVDDRNAAEALNGVELYGEADDAEDMLEADEWYPKDLIGLEARLVEGNGLGLPAG 126 Query: 126 ----KVVDMMETGSNDVLVIKANLKDAFGI---------KERLVPFLDGQVIKKVDLTTR 172 KVVD++++ + +L I+ G K LVPF++ ++ +DL + Sbjct: 127 QVVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEA-LVPDIDLEEQ 185 Query: 173 SIEVDWDPGF 182 + +D G Sbjct: 186 YLTLDPPGGL 195 >UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5F8_9DELT Length = 197 Score = 138 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ---KAGQWQQVQLESWKH 65 A I++G +G +GIRG L + S + + G+ + + + + Sbjct: 2 AADKYIIVGDVGRPHGIRGELGINSHADSPSYFARGALLRLSPPADPGRGKDYVVRAARP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT----TEG 121 H +++ L GV DR+AA L + V S+L + G+ + +L+G +V Sbjct: 62 HQGRILVTLDGVSDRNAAEALRGLAVCVPVSKLDPPDPGEVFLHELLGLRVRLAGAQPAD 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 DLG + D+ ++G ++ +I+ +E L P D +++ +DL R +D PG Sbjct: 122 PDLGVLEDVRDSGGAELWIIRD-----AKGREILFPAAD-ELVPDLDLEARIAVIDPPPG 175 Query: 182 F 182 Sbjct: 176 L 176 >UniRef50_A8SMU8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMU8_9FIRM Length = 166 Score = 138 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 11/173 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 ++ I + K+ + +GI+G ++++S T + + ++I K V ++S K + D+ Sbjct: 1 MEFIEVAKIINVHGIKGTVKIYSLTSNIDRFNADCIFYIDKK---IPVTIKSVKELSSDL 57 Query: 71 -IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ D+ + N + ++ S L +L E +YY L+G V + +GK+ + Sbjct: 58 ALLTFNEYDNINQVLEFKNKGLFIEESNLLELPEDEYYIYKLIGVDVYDQDNKFIGKIKN 117 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T +NDV I N KD + +P + + IK VD+ ++V G Sbjct: 118 VLTTLANDVYDIDYNGKDVY------IPAVK-EFIKDVDIEKSIMKVSIIDGM 163 >UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMM_ACIBL Length = 209 Score = 138 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 13/182 (7%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWK 64 ++ D I + ++ + G G + T+ E + + + G+ ++++LE Sbjct: 5 SSTNTDDFITIARIQKTQGRVGEVFSELFTDFPELFEQRHHLYVLPEKGERRELELEDHW 64 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG--- 121 H +++K +G++ D A L E+ + QLEEG Y DL+GC++ G Sbjct: 65 FHKGGVVLKFQGIETIDDAEKLLRSEVQIPRQDRAQLEEGATYVSDLVGCELFEIHGSEA 124 Query: 122 YDLGKVVDM-METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +G V D+ G +LV+K G +E L+P+++ +K D + IE+ Sbjct: 125 RKVGVVADVDFSAGEAPLLVVK-------GDREHLIPYVES-FLKSTDFKAKRIEMVLPQ 176 Query: 181 GF 182 G Sbjct: 177 GM 178 >UniRef50_Q1IYA4 Ribosome maturation factor rimM n=2 Tax=Deinococcus RepID=RIMM_DEIGD Length = 178 Score = 138 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 AP D LG +G++G ++V+ D + + +++ G +++ + Sbjct: 1 MNAPADTTRLGYFLGPHGVQGGVKVYVL-GDPQQLLALPRVWVEGQGW---LRVRRTEAL 56 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ L G+ R+AA L + + LP LEEG YY+ +L G V G LG+ Sbjct: 57 APGAVLHLAGITSREAAEALRGLNVYAADADLPPLEEGSYYYHELRGLPVRDANGQPLGE 116 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFL 159 V D+ ++G D+LV+ +AF + P++ Sbjct: 117 VRDVWDSGHQDLLVVSHAGGEAFLPLQA--PYV 147 >UniRef50_Q5P9G0 Ribosome maturation factor rimM n=4 Tax=Anaplasma RepID=RIMM_ANAMM Length = 171 Score = 138 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 9/161 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D ++LG + + +G+ G ++V + TED I Y P + V + S +I Sbjct: 5 DMVLLGVVRAPHGVMGLVKVRTFTEDPSHISAYGP--LTDGHNCFNVTVVSVLGA-DSVI 61 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K G+ R + L + V S LP+L+E ++Y +L+G +G G + ++ Sbjct: 62 AKFDGLSSRTESEKLRGKRLYVSRSSLPRLQEDEFYENELIGMDAKLEDGTAYGVISAIL 121 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTR 172 GS D++ + + K +VPF VD+ R Sbjct: 122 NFGSCDIIELSTSTG-----KVVMVPFSRSTF-PVVDVERR 156 >UniRef50_A5CVM9 16S rRNA processing protein RimM n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CVM9_VESOH Length = 136 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 8/143 (5%) Query: 40 SIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP 99 +I YQPW+I WQ + + + + ++ ++K + D++ A + + + + SQL Sbjct: 2 NILSYQPWYINVDSHWQTLNISQGRVQAKTIVAQIKDIFDKEQARVYIDINLYIKKSQLL 61 Query: 100 QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFL 159 +L+EG+YYW DL+G +VV + LGKV ++++TGSN+VLV++ G KE VP++ Sbjct: 62 RLKEGEYYWNDLIGLEVVNKAQFVLGKVFNLVDTGSNNVLVVR-------GGKEHWVPYI 114 Query: 160 DGQVIKKVDLTTRSIEVDWDPGF 182 +I+ VD+ + I VDWD F Sbjct: 115 SPFLIQ-VDINNQIILVDWDENF 136 >UniRef50_Q73PB6 Ribosome maturation factor rimM n=2 Tax=Treponema RepID=RIMM_TREDE Length = 179 Score = 138 bits (349), Expect = 8e-32, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 10/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ--------VQLES 62 +D + G++ ++GI G+++V S + + E + F+ + + ++E Sbjct: 1 MDLLATGRIRGTFGIEGFVKVESFSGEYEHFLGFDRVFLSILKEKLREQKYKDGWFEIEE 60 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 D ++K KG+D+ +AA LT E+ + + L+EG+ Y DL C +V EG Sbjct: 61 VNLRKADALVKFKGIDNPEAAKCLTGSELFIPRDKAAPLDEGEVYVHDLCNCNLVC-EGT 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 +GK+ + E G +L I +A VPF + + I K+DL +++E Sbjct: 120 LVGKITSVAEGGGGYLLEIAGKTSEAAAESSFYVPF-NKEFIGKIDLKAKTVE 171 >UniRef50_A7HKS0 Ribosome maturation factor rimM n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=RIMM_FERNB Length = 177 Score = 138 bits (349), Expect = 9e-32, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 9/171 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW--FIQKAGQWQQVQLESWKHHNQD 69 D I G + +++G+ G L+++ + E + + + ++ V+ + + Sbjct: 11 DKIPYGILSNTHGLNGDLKLYLFSNMPELVEKITEAVAYNESQKKFVIVKFSKVRKASDY 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I+ L G+D A L I +D S P+ ++G+YY+ +++ +V G +G V D Sbjct: 71 FIVHLTGIDTISEAEKLKGFIIYLDKSFFPKSKDGEYYFFEILNAEVYDNAGEFIGIVED 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++ETG+NDV+V+K +E L+P ++ I K+D + I V+ Sbjct: 131 IIETGNNDVIVVKKE------KEEVLIPVIERY-ILKIDKEAKKIIVNMPE 174 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammap... 238 9e-62 UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammapr... 231 1e-59 UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromo... 216 3e-55 UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammapr... 216 4e-55 UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammapro... 205 5e-52 UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiel... 198 6e-50 UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammapro... 198 9e-50 UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromo... 196 2e-49 UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methyloc... 195 6e-49 UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudom... 194 9e-49 UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenz... 194 1e-48 UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella ... 194 1e-48 UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaprot... 194 1e-48 UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammapro... 193 2e-48 UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanosp... 193 2e-48 UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas... 193 2e-48 UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylo... 192 3e-48 UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalk... 192 6e-48 UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclass... 192 7e-48 UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylo... 191 1e-47 UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkhol... 191 1e-47 UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinom... 190 2e-47 UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobac... 190 2e-47 UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammapr... 189 3e-47 UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfur... 189 3e-47 UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalili... 189 3e-47 UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteri... 189 4e-47 UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobac... 188 6e-47 UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicr... 188 7e-47 UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteri... 188 8e-47 UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia ... 188 9e-47 UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenz... 188 9e-47 UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylob... 187 1e-46 UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acineto... 187 1e-46 UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiob... 187 2e-46 UniRef50_Q9FHG3 Genomic DNA, chromosome 5, TAC clone:K11I1 n=2 T... 185 6e-46 UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphapro... 185 6e-46 UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, s... 185 8e-46 UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudov... 184 8e-46 UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobac... 184 1e-45 UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococ... 184 1e-45 UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella... 183 2e-45 UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallion... 183 2e-45 UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Bre... 183 2e-45 UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfa... 183 2e-45 UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanoba... 183 3e-45 UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammapro... 183 3e-45 UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella m... 183 3e-45 UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermob... 182 3e-45 UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothi... 182 3e-45 UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidat... 182 3e-45 UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicycl... 182 3e-45 UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkhol... 182 3e-45 UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelob... 181 8e-45 UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiat... 181 1e-44 UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobac... 181 1e-44 UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrob... 181 1e-44 UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacilla... 181 1e-44 UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiob... 180 2e-44 UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfo... 180 2e-44 UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultu... 180 2e-44 UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacill... 180 2e-44 UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomon... 180 2e-44 UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonif... 180 2e-44 UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisser... 180 2e-44 UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phylloba... 179 3e-44 UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillon... 179 4e-44 UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa Re... 179 4e-44 UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammapr... 179 5e-44 UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostri... 179 5e-44 UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrh... 179 5e-44 UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactoba... 179 5e-44 UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbioba... 178 7e-44 UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingell... 178 7e-44 UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Sel... 178 8e-44 UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfo... 177 1e-43 UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodoba... 177 2e-43 UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadec... 177 2e-43 UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine ... 177 2e-43 UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillal... 176 2e-43 UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera... 176 3e-43 UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphyl... 176 3e-43 UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermom... 175 5e-43 UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=... 175 5e-43 UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma... 175 6e-43 UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomi... 175 7e-43 UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechoc... 175 8e-43 UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria... 174 9e-43 UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidat... 174 9e-43 UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostrid... 174 1e-42 UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepI... 174 1e-42 UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacte... 174 1e-42 UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialist... 174 1e-42 UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionel... 174 1e-42 UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdema... 174 2e-42 UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostrid... 173 3e-42 UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella... 173 3e-42 UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodoba... 173 3e-42 UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma p... 172 4e-42 UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickett... 172 5e-42 UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 172 5e-42 UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobi... 172 5e-42 UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranae... 172 6e-42 UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetel... 172 6e-42 UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfo... 171 8e-42 UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosom... 171 8e-42 UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfo... 171 1e-41 UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter ... 171 1e-41 UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Cauloba... 171 1e-41 UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera... 170 1e-41 UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydro... 170 2e-41 UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfo... 170 2e-41 UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta pr... 170 2e-41 UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechoc... 170 2e-41 UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacte... 169 4e-41 UniRef50_Q0AKL5 Ribosome maturation factor rimM n=2 Tax=Hyphomon... 169 4e-41 UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttle... 169 5e-41 UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobia... 169 5e-41 UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntroph... 168 6e-41 UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillon... 168 7e-41 UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactoba... 168 8e-41 UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomy... 168 1e-40 UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothe... 168 1e-40 UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobac... 167 1e-40 UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitroso... 167 1e-40 UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma p... 167 1e-40 UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechoc... 167 1e-40 UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermoto... 167 2e-40 UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobac... 167 2e-40 UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipe... 166 2e-40 UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramid... 166 3e-40 UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphapro... 166 3e-40 UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodoth... 166 3e-40 UniRef50_C5YVW0 Putative uncharacterized protein Sb09g028680 n=2... 166 3e-40 UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinom... 166 3e-40 UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostri... 166 3e-40 UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=... 165 4e-40 UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacilla... 165 5e-40 UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera... 165 6e-40 UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacte... 165 6e-40 UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli ... 165 7e-40 UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidith... 165 7e-40 UniRef50_A3TRE4 16S rRNA-processing protein n=1 Tax=Janibacter s... 165 8e-40 UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobac... 165 8e-40 UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacte... 164 1e-39 UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pedioco... 164 1e-39 UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candida... 164 1e-39 UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetos... 164 1e-39 UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2... 164 1e-39 UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliph... 164 1e-39 UniRef50_C0XS98 16S rRNA-processing protein n=1 Tax=Corynebacter... 164 2e-39 UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostri... 164 2e-39 UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissel... 163 2e-39 UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthoba... 163 2e-39 UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfit... 162 3e-39 UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomi... 162 4e-39 UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Coryneb... 162 6e-39 UniRef50_Q688X2 Os05g0566300 protein n=4 Tax=Poaceae RepID=Q688X... 162 6e-39 UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxyd... 161 8e-39 UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidami... 161 1e-38 UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=... 161 1e-38 UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synecho... 161 1e-38 UniRef50_C7LP63 16S rRNA processing protein RimM n=1 Tax=Desulfo... 161 1e-38 UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyc... 160 1e-38 UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinom... 160 2e-38 UniRef50_C1F3B3 Ribosome maturation factor rimM n=1 Tax=Acidobac... 160 2e-38 UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Therman... 160 2e-38 UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospi... 160 2e-38 UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconos... 160 2e-38 UniRef50_B2GFY3 Ribosome maturation factor rimM n=2 Tax=Micrococ... 160 2e-38 UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquet... 160 2e-38 UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococc... 160 3e-38 UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthros... 159 3e-38 UniRef50_C7NGX6 16S rRNA processing protein RimM n=1 Tax=Kytococ... 159 4e-38 UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehaloco... 159 5e-38 UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine ... 159 5e-38 UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostri... 159 5e-38 UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosi... 159 5e-38 UniRef50_A0JXU0 Ribosome maturation factor rimM n=4 Tax=Micrococ... 159 6e-38 UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostri... 158 7e-38 UniRef50_B1VYW1 Ribosome maturation factor rimM n=20 Tax=Actinom... 158 9e-38 UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonel... 158 9e-38 UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Auranti... 157 1e-37 UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucl... 157 1e-37 UniRef50_C7MB75 16S rRNA processing protein RimM n=1 Tax=Brachyb... 157 2e-37 UniRef50_C1TLS3 16S rRNA processing protein RimM n=1 Tax=Dethios... 157 2e-37 UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halother... 157 2e-37 UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasm... 157 2e-37 UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostri... 156 2e-37 UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotro... 156 3e-37 UniRef50_B0JU07 Ribosome maturation factor rimM n=5 Tax=Chroococ... 156 3e-37 UniRef50_A3HW20 RimM n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW20_9... 156 4e-37 UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinom... 156 4e-37 UniRef50_B4WHU3 16S rRNA processing protein RimM n=1 Tax=Synecho... 155 4e-37 UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotog... 155 6e-37 UniRef50_Q6NGI4 Ribosome maturation factor rimM n=1 Tax=Coryneba... 155 6e-37 UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomy... 155 8e-37 UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli... 155 9e-37 UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microsc... 154 9e-37 UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylob... 154 1e-36 UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonel... 154 1e-36 UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobac... 154 1e-36 UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Maripro... 154 1e-36 UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphapro... 154 1e-36 UniRef50_Q72DU2 Ribosome maturation factor rimM n=6 Tax=Desulfov... 154 1e-36 UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostri... 154 1e-36 UniRef50_Q4BZC6 RimM protein:PRC-barrel n=1 Tax=Crocosphaera wat... 154 1e-36 UniRef50_D0WR63 16S rRNA processing protein RimM n=1 Tax=Actinom... 154 2e-36 UniRef50_C4XKL9 Probable 16S rRNA processing protein RimM n=1 Ta... 153 2e-36 UniRef50_C0GQX6 16S rRNA processing protein RimM n=1 Tax=Desulfo... 153 2e-36 UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Par... 153 3e-36 UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntroph... 152 4e-36 UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francis... 152 4e-36 UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyog... 152 6e-36 UniRef50_Q1MQV0 Ribosome maturation factor rimM n=1 Tax=Lawsonia... 152 6e-36 UniRef50_B3DTN1 Ribosome maturation factor rimM n=19 Tax=Bifidob... 152 7e-36 UniRef50_D1NUF5 16S rRNA processing protein RimM n=1 Tax=Bifidob... 151 8e-36 UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschi... 151 9e-36 UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinom... 150 1e-35 UniRef50_C4LJC2 16S rRNA processing protein n=1 Tax=Corynebacter... 150 1e-35 UniRef50_C8X433 16S rRNA processing protein RimM n=1 Tax=Desulfo... 150 1e-35 UniRef50_C3RL40 Ribosome maturation factor rimM n=4 Tax=Bacteria... 150 2e-35 UniRef50_C2KRG1 16S rRNA processing protein RimM n=3 Tax=Mobilun... 150 2e-35 UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomon... 150 2e-35 UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobact... 150 2e-35 UniRef50_C7H4K9 16S rRNA processing protein RimM (Fragment) n=2 ... 150 2e-35 UniRef50_C2KW13 Possible 16S rRNA processing protein n=1 Tax=Ori... 150 2e-35 UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococc... 150 2e-35 UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfo... 150 2e-35 UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostri... 150 2e-35 UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chlorof... 149 3e-35 UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotog... 149 4e-35 UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta p... 149 4e-35 UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitre... 149 4e-35 UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostri... 149 5e-35 UniRef50_A2C552 Ribosome maturation factor rimM n=8 Tax=cellular... 149 6e-35 UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetoc... 148 7e-35 UniRef50_B0S046 Ribosome maturation factor rimM n=2 Tax=Finegold... 148 8e-35 UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidat... 148 1e-34 UniRef50_A8SMU8 Putative uncharacterized protein n=1 Tax=Parvimo... 147 1e-34 UniRef50_A8IWD5 RimM-like protein (Fragment) n=1 Tax=Chlamydomon... 147 2e-34 UniRef50_D1VUX0 16S rRNA processing protein RimM n=1 Tax=Peptoni... 147 2e-34 UniRef50_C7R321 16S rRNA processing protein RimM n=3 Tax=Microco... 147 2e-34 UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingom... 147 2e-34 UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfu... 147 2e-34 UniRef50_A4RXW7 Predicted protein n=3 Tax=Mamiellales RepID=A4RX... 146 3e-34 UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroh... 145 4e-34 UniRef50_A6NV55 Putative uncharacterized protein n=1 Tax=Bactero... 145 4e-34 UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseifle... 145 5e-34 UniRef50_D2MLY7 16S rRNA processing protein RimM n=1 Tax=Bulleid... 145 5e-34 Sequences not found previously or not previously below threshold: >UniRef50_Q31XD7 Ribosome maturation factor rimM n=209 Tax=Gammaproteobacteria RepID=RIMM_SHIBS Length = 185 Score = 238 bits (607), Expect = 9e-62, Method: Composition-based stats. Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL Sbjct: 4 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 63 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE Sbjct: 64 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 123 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP Sbjct: 124 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 183 Query: 181 GF 182 GF Sbjct: 184 GF 185 >UniRef50_A1JK24 Ribosome maturation factor rimM n=52 Tax=Gammaproteobacteria RepID=RIMM_YERE8 Length = 182 Score = 231 bits (589), Expect = 1e-59, Method: Composition-based stats. Identities = 148/182 (81%), Positives = 165/182 (90%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MSKQL P PIVLGKMGS+YGIRGWLRVFSSTE+AESIFDYQPWFIQ+ G+WQ V+L Sbjct: 1 MSKQLNPVVPEQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWFIQQGGKWQHVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 E WK H+QD+IIK+KGVDDRDAANLLTNCEIVVDS QLP+LEE DYYWKDLMGCQVVTT Sbjct: 61 EDWKRHSQDLIIKVKGVDDRDAANLLTNCEIVVDSKQLPELEEDDYYWKDLMGCQVVTTA 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GY+LGK++DMMETGSNDV+V+KANLKDAFG+KERLVPFL GQVIK VDLT + +EVDWDP Sbjct: 121 GYELGKIIDMMETGSNDVMVVKANLKDAFGMKERLVPFLHGQVIKNVDLTAQRVEVDWDP 180 Query: 181 GF 182 GF Sbjct: 181 GF 182 >UniRef50_Q3IEC8 Ribosome maturation factor rimM n=6 Tax=Alteromonadales RepID=RIMM_PSEHT Length = 178 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 95/178 (53%), Positives = 127/178 (71%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 ++ + IV+GK+G+ YGI+GWL+V S T+D IFD+ PW I + G+WQ +++ W+ Sbjct: 1 MSQENTSSIIVVGKLGAPYGIKGWLKVHSFTDDPAGIFDFSPWLIGQQGKWQTLEVVDWR 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 HN+ I K V+DRD A T+ EI +DS+QLP+L +G++YW+DL+G VVT +GYDL Sbjct: 61 RHNKGFIAKFAQVNDRDEAVAYTHAEISMDSAQLPELPQGEFYWRDLIGMSVVTDKGYDL 120 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V D+METGSNDVLV+KAN KDAFG ERL+PFL VI +V R I VDWDPGF Sbjct: 121 GIVDDLMETGSNDVLVVKANSKDAFGQAERLIPFLTDTVIIEVKHDAREITVDWDPGF 178 >UniRef50_A3QBT7 Ribosome maturation factor rimM n=24 Tax=Gammaproteobacteria RepID=RIMM_SHELP Length = 176 Score = 216 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 85/176 (48%), Positives = 128/176 (72%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + +P+VLGK+G+S+GI+GWL++ S T+ E IFDY PW I++ G+W++V++ W++ Sbjct: 1 MSSHQEPVVLGKLGASHGIKGWLKITSYTDSVEDIFDYSPWLIKEQGEWREVKVAQWRYQ 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + +I L+GV RD A +LTNCEI + + + L E ++YW+DL+GC+VV T+GY +GK Sbjct: 61 GKAIIAALEGVTTRDQAQMLTNCEIAIPAEAMKALPEDEFYWRDLIGCEVVNTKGYKMGK 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++ETGSNDVL++KAN KD FG ER++PF+ Q I +V+L + I VDWDP F Sbjct: 121 VDQIVETGSNDVLLVKANAKDGFGKTERMIPFVTEQFILEVNLAEKQILVDWDPDF 176 >UniRef50_A6W1U1 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_MARMS Length = 181 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MS+ A AP +V+G++ S YG++GW++++S TE + IFDY+ W+++ W+ V+L Sbjct: 1 MSELKQAAAPEQALVVGRITSVYGVKGWVKLYSHTEPMQGIFDYKHWWLKTPSGWKTVEL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + + ++ +KG DRD + ++ +D+++LP+LEEGDYYW L G +V+T E Sbjct: 61 SQGRLQGRGLVASVKGYTDRDQVKDICGMDVYIDAAELPELEEGDYYWSQLEGLRVITKE 120 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LGKV +METG+NDV+V++A +F +ERL+P+ G + +DL + + VDWDP Sbjct: 121 GVLLGKVSQLMETGANDVIVVRACEG-SFDREERLIPYAPGTYVLNIDLEQQEMVVDWDP 179 Query: 181 GF 182 F Sbjct: 180 EF 181 >UniRef50_C7RAD0 16S rRNA processing protein RimM n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAD0_KANKD Length = 173 Score = 198 bits (505), Expect = 6e-50, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 111/167 (66%), Gaps = 5/167 (2%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 P+++GK+ + GI+GW++VFS T+ E+I +Y PW+++ GQWQQV + + + + ++ Sbjct: 6 KPLIVGKLNGASGIKGWVKVFSYTDPKENILNYSPWYLKLDGQWQQVLIINGREQGKTVV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +L+G +DR+ A EI +D SQLPQLEEG+YYW+DL+G VV G ++G V MM Sbjct: 66 AQLEGCNDRNTAESYRGVEIAIDESQLPQLEEGEYYWRDLVGLTVVNVAGDEMGTVEKMM 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ETG+NDVLV+K +E L+P++ + KVDL ++ I VDW Sbjct: 126 ETGANDVLVVKT-----ASKEELLIPYVPEYSVIKVDLESKQITVDW 167 >UniRef50_Q1QT49 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_CHRSD Length = 184 Score = 198 bits (504), Expect = 9e-50, Method: Composition-based stats. Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +VLG++ S YG++GWL+V+S T E IF++ W + K G+ + +L + H + + Sbjct: 14 DEHVVLGRLTSPYGVKGWLKVYSYTSPIEGIFEHAEWVLSKRGERRACKLSQGRPHGKGL 73 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L+G+ R+ A +I++ LP L GDYYW L G +V T +G LG+V + Sbjct: 74 VASLEGISSRELAEQWAGADILLPKQALPALAPGDYYWYQLEGLRVETLDGECLGQVNYL 133 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG+NDVLVI+ + + +ERL+PFL VI++VDL + VDWDP F Sbjct: 134 FETGANDVLVIR-PSEASLDERERLLPFLPDDVIRQVDLDAGRMIVDWDPEF 184 >UniRef50_B4RXC6 Ribosome maturation factor rimM n=3 Tax=Alteromonadaceae RepID=RIMM_ALTMD Length = 173 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 80/176 (45%), Positives = 125/176 (71%), Gaps = 3/176 (1%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 D +++GK+G+ YG++GW+++ S TE E IF+Y PWFI G+ ++ Q++ W+ H Sbjct: 1 MSLASDKVIVGKIGAPYGVKGWVKINSYTETPEGIFEYAPWFI---GEEKEYQIDQWRPH 57 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++ K+ GVD RD A + N +I +++SQLP L + YW++L G +VVTT+GYDLG Sbjct: 58 GKSLVAKIVGVDSRDDAERIKNLDININASQLPDLGDEGVYWRELTGMKVVTTQGYDLGV 117 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++ TG+NDV+ +KAN+ DAFG KERL+PF+ +V+++VD + I+VDWDPGF Sbjct: 118 VKEVFNTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKVIKVDWDPGF 173 >UniRef50_Q60BS2 Ribosome maturation factor rimM n=1 Tax=Methylococcus capsulatus RepID=RIMM_METCA Length = 172 Score = 195 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 108/179 (60%), Gaps = 8/179 (4%) Query: 5 LTAQAPVDP-IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 + + D +V+G++ ++G+RGW++ S T+ ++ Y+PW +++ ++ + Sbjct: 1 MPGNSGNDRSVVVGRVSGAFGVRGWVKAVSFTDPPVNLVGYRPWTLRRGDAERRADVLEG 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H +I++L+GVD R+ A L E+ V SQLP G+YY DL+G +VV Sbjct: 61 REHGNAVIVRLQGVDTREQAEALKGFEVTVRRSQLPPPAPGEYYRVDLVGLKVVNLGETV 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG+VVD+METG+NDVLV++ G +ERL+PF+ G +K V+L I VDWDPGF Sbjct: 121 LGEVVDVMETGANDVLVVQ-------GDRERLLPFVQGVFVKSVNLEESRIVVDWDPGF 172 >UniRef50_Q4ZWY8 Ribosome maturation factor rimM n=21 Tax=Pseudomonadaceae RepID=RIMM_PSEU2 Length = 179 Score = 194 bits (495), Expect = 9e-49, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 113/180 (62%), Gaps = 3/180 (1%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLES 62 T + D IV+GK+ S +G+RG ++V+S T+ ++ DY+ W +++ G +QV+L S Sbjct: 2 NATPASADDLIVIGKIYSVHGVRGEVKVYSFTDPIGNLLDYKTWTLRREGSVDKQVELVS 61 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + ++ ++ KLKG+DDR+ A LL+ EI V + P L++G+YYW L G +V+ G Sbjct: 62 GRLQSKFLVTKLKGLDDREEARLLSGYEICVPRNLFPDLDDGEYYWYQLEGLKVIDQLGQ 121 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LGK+ ++ETGSNDV+V+K + +ERL+P+ + Q + +D+ ++VDWD F Sbjct: 122 LLGKIDHLLETGSNDVMVVK-PCAGSLDDRERLLPYTE-QCVLAIDMAAGEMKVDWDADF 179 >UniRef50_A0NX77 16S rRNA processing protein RimM n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NX77_9RHOB Length = 184 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 86/177 (48%), Gaps = 9/177 (5%) Query: 7 AQAPVD-PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 + D +++ K+G+++GIRG +RV +D S DY + + ++E + Sbjct: 1 MTSEDDQKVLMAKIGAAHGIRGEVRVKPYGDDPLSFADYGILTTRDGK--RSFEVERARV 58 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 +I K KG+ DR+ A L ++ +D QLP+ EE ++Y+ DL G V+ G LG Sbjct: 59 QKTVVITKFKGITDRNQAEELNGIDLFIDRDQLPEPEEDEFYYSDLTGLDVLDQTGETLG 118 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 K++ + + G+ D+L ++ + +PF + ++DL + V + Sbjct: 119 KIIAVQDFGAGDLLEVRPKR-----GRSFYIPFTK-DFVPEIDLENGRVCVSLPEDY 169 >UniRef50_Q2SL57 Ribosome maturation factor rimM n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RIMM_HAHCH Length = 173 Score = 194 bits (493), Expect = 1e-48, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 2/174 (1%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHHNQ 68 + + +GK+ YG++GWL+V S T E++ Y W +++ G +L S K + Sbjct: 1 MSEKVCIGKIVGVYGVKGWLKVRSFTSPPENMLRYANWELVREDGNRSSAKLRSGKPQGK 60 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++I L GVDDR+ A C+I ++SS+LP LEEG+YYW+ L G V T+EG ++G+V Sbjct: 61 GIVIALAGVDDRNLAKSYVGCQIEIESSELPALEEGEYYWRQLEGLTVFTSEGVNIGRVS 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+NDVLV+ + ++ +ERL+P+L GQ I+ +DL + VDWDP F Sbjct: 121 HLIETGANDVLVVIGS-AESIDKRERLIPYLPGQFIENIDLDKNLMVVDWDPDF 173 >UniRef50_Q3SGC3 Ribosome maturation factor rimM n=2 Tax=Betaproteobacteria RepID=RIMM_THIDA Length = 189 Score = 194 bits (493), Expect = 1e-48, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 107/181 (59%), Gaps = 8/181 (4%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 S +V+G++ + +G++GW++V +ED ++ D++ W + + Q Q +E Sbjct: 17 SPPPDLAESEAWVVMGRVSAPFGVKGWVKVQPFSEDPGTLMDFESWRVGRGEQQAQYAVE 76 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + + H + ++ KL G+DDRDAA L E+ V S LP EE ++YW DL+G V+ EG Sbjct: 77 AVQDHGKSLVAKLVGIDDRDAAFALRGQEVSVAKSALPPPEENEFYWSDLIGLTVMNREG 136 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +LGKV +ME+G++D+LV+K G +E L+PF+ + KVDL ++EVDW Sbjct: 137 VELGKVDSLMESGAHDLLVVK-------GRREHLIPFV-AAFVGKVDLAGGTVEVDWGED 188 Query: 182 F 182 + Sbjct: 189 Y 189 >UniRef50_Q3J8X9 Ribosome maturation factor rimM n=4 Tax=Gammaproteobacteria RepID=RIMM_NITOC Length = 175 Score = 193 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 78/181 (43%), Positives = 120/181 (66%), Gaps = 9/181 (4%) Query: 4 QLTAQAPVD--PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 +L +A D +++G++ YG++GWLRV+S T+ +I DY+PW++Q+ G WQ +L Sbjct: 2 ELGQEATDDKRYVLVGRISGLYGVQGWLRVYSYTQPRNNILDYEPWYLQQNGAWQARRLR 61 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + + +++ L+G+D+RD A L CEI V QLP +EG+YYW DL+G QV+T +G Sbjct: 62 KGRVQGKGIVVALEGIDERDVAALWVGCEIAVHRDQLPPPQEGEYYWSDLIGLQVITLQG 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG+V ++ETG+NDVLV++ G +ERL+PFL G ++K+VDL + VDWDP Sbjct: 122 EVLGQVDRLLETGANDVLVVR-------GERERLLPFLMGMIVKQVDLQQGLLTVDWDPD 174 Query: 182 F 182 F Sbjct: 175 F 175 >UniRef50_Q0VRF1 Ribosome maturation factor rimM n=2 Tax=Oceanospirillales RepID=RIMM_ALCBS Length = 196 Score = 193 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 111/180 (61%), Gaps = 11/180 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA----------GQWQQVQLES 62 +V+G++ +G++GW++V+S T+ ++ YQPW +++ G W+ V++ Sbjct: 18 LVVVGRILGVHGVKGWVKVYSYTDPMVNLQQYQPWHLKQGALNSGGSSAAGTWKPVKVTG 77 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 ++ + +I +L+GV DR+AA L +I V + LPQ +G+YYW+DL+G +V G Sbjct: 78 FRPQGKGLIAQLEGVSDREAAAALVGQDIGVPADLLPQSGQGEYYWRDLIGLRVKHVNGM 137 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 DLG V M+ETG+NDV+V++ + +++ +ERL+P+L VI + L + VDWDP F Sbjct: 138 DLGSVTRMVETGANDVVVVRGD-RNSLDRRERLIPWLPEDVITAISLEDGEMTVDWDPDF 196 >UniRef50_Q1ZI34 16S rRNA-processing protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZI34_9GAMM Length = 175 Score = 193 bits (491), Expect = 2e-48, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 122/176 (69%), Gaps = 1/176 (0%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 +PIV+GK G+ +GI+GWL++ S T+DAESIF Y+P ++ G Q+V + WK H Sbjct: 1 MSNVAEPIVIGKFGAVHGIKGWLKIHSYTDDAESIFQYKPLLMKYNGVMQEVNITDWKAH 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + + K+K D R+ + L E++V+ ++LP LE+ +YW+DL+GCQV T +GY LG Sbjct: 61 SGTFVAKIKSFDVREESQALVGVELLVNINELPDLEDD-FYWRDLIGCQVETDKGYHLGA 119 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V DMMETGS DVLV+KAN DAFG K+RL+PF+ QV+ V++T + I V+W+P F Sbjct: 120 VTDMMETGSKDVLVVKANANDAFGQKQRLIPFIKEQVVLDVNITGKLIIVNWEPDF 175 >UniRef50_C6WZ27 16S rRNA processing protein RimM n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WZ27_METML Length = 196 Score = 192 bits (490), Expect = 3e-48, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 23/194 (11%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +V+G++ + YG+ GWL+V TE + +FDY W++ K W+++ +E+ K HN + Sbjct: 4 DNMVVMGRIVAPYGVYGWLKVVPDTEAIDGLFDYDSWWLGKGDDWREMVVETAKIHNDVI 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++KL G+DDRDAA +I V +QLP+ +E +YYW DL+G +V ++G D G + ++ Sbjct: 64 VVKLVGIDDRDAAFACKGKQIAVPRAQLPEPDENEYYWSDLVGLRVTNSQGVDFGVITEV 123 Query: 131 METGSNDVLVIKAN----------------------LKDAFGIKERLVPFLDGQVIKKVD 168 ETG+NDVLV+K + +ERL+PF+ V+ VD Sbjct: 124 FETGANDVLVVKPDALVKPDSSAKADSKAKSDAVPVEAGKDKPQERLIPFV-ADVVLTVD 182 Query: 169 LTTRSIEVDWDPGF 182 L +S+ VDWD F Sbjct: 183 LEAKSMLVDWDEDF 196 >UniRef50_B9ZMI0 16S rRNA processing protein RimM n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMI0_9GAMM Length = 169 Score = 192 bits (488), Expect = 6e-48, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 7/176 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + I +G++ YG++GW+R+FS TE +I D+ +++ W+ V++E+ + H Sbjct: 1 MNEAGERIRVGRVSGVYGVKGWVRIFSETEPRAAIADFPHLWLRAGADWRLVEVEAGRAH 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +++K DR+AA L E+ ++ LP E+G+YYW DL+G +V +G LG+ Sbjct: 61 GHGVVMKFAETADREAAYGLMGAELAIERDWLPPAEDGEYYWADLLGMKVEHQDGTALGR 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + METG+NDVLV++ G +ERL+P++ GQ I VDL R + VDWDP F Sbjct: 121 ISGFMETGANDVLVVR-------GDRERLIPWVRGQYILDVDLEGRRLRVDWDPEF 169 >UniRef50_A4ADG3 16S rRNA processing protein rimM n=2 Tax=unclassified Gammaproteobacteria RepID=A4ADG3_9GAMM Length = 179 Score = 192 bits (488), Expect = 7e-48, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 6/180 (3%) Query: 7 AQAPVD-PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 P + ++ GK+ +YGI+GW++V T+ ++ F ++ + + GQ + ++L + Sbjct: 1 MNTPENQMLLAGKITGAYGIKGWVKVQVFTDPPDNFFAFRHHQVLRRGQLETIELVDGRS 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-- 123 + + ++ GVD+R A LL EI V S+LP L +YYW L G QV G Sbjct: 61 QGKGWVARVVGVDNRTDAELLRGTEIWVPQSELPVLASDEYYWHQLQGLQVWCEHGEQRL 120 Query: 124 -LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW-DPG 181 LG+V ++ETG+NDVLV++++ + +ERL+P+L V+ VD ++ V+W Sbjct: 121 LLGEVDHLLETGANDVLVLRSSEG-SIDERERLIPYLPDSVVLAVDTEAGTMTVNWHPED 179 >UniRef50_C0N9Z5 16S rRNA processing protein RimM n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9Z5_9GAMM Length = 172 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 4/172 (2%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + I +GK+ ++GI+GW++VFS T+ +I +Y P F+ + G+W ++++ Sbjct: 1 MATSEEFIPVGKISGAFGIKGWVKVFSFTDPRTNILEYSPLFLSRQGEWIEIKVSGGHLQ 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + +++ + V DRD L E+ + QL EE ++YW DL G V+ E LG+ Sbjct: 61 GKGVVMGIANVTDRDQVQPLIGSELAIKKEQLEPAEEDEFYWSDLQGLTVMNLEDETLGQ 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V ++ETG+NDVLV+KA ++ ERL+PF+ +++K VDL + I+VDW Sbjct: 121 VDHLLETGANDVLVVKAKGENT----ERLIPFVMEEIVKAVDLDKQLIQVDW 168 >UniRef50_Q0KD80 Ribosome maturation factor rimM n=10 Tax=Burkholderiales RepID=RIMM_RALEH Length = 222 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 16/185 (8%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA------------GQWQQ 57 P D + +G +G++YGIRGW++V +DA ++ + W++ Q Sbjct: 40 PEDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVC 99 Query: 58 VQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 V++ + H+ ++ + GV DR+ A L + + + P EE ++YW DL+GC V Sbjct: 100 VKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPEEDEFYWVDLIGCTVS 159 Query: 118 TTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G LG+V +++ G++ +L + L D ERL+PF+D ++ VD + I VD Sbjct: 160 NEQGELLGEVSGLIDNGAHQILQVACVLPDGKAG-ERLIPFVDA-FLRSVDTAGKRIVVD 217 Query: 178 WDPGF 182 W G Sbjct: 218 W--GL 220 >UniRef50_D1AB16 16S rRNA processing protein RimM n=8 Tax=Actinomycetales RepID=D1AB16_THECD Length = 172 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D +V+G++G +G+RG + V T+D ++ F + +E + H Sbjct: 2 RDDQVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPLTVERARWHVGR 61 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVV 128 ++++ GVDDR AA L +VVD+ LP LE+ +++ +L+G VTT+G +G V Sbjct: 62 LLLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTVR 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ + D+LVI+ E LVPF+ ++ +VD+ I +D PG Sbjct: 122 DILHY-AQDLLVIRRETGG-----EALVPFV-AALVPEVDVAGGRIVIDPPPGL 168 >UniRef50_A6SVI5 Ribosome maturation factor rimM n=3 Tax=Oxalobacteraceae RepID=RIMM_JANMA Length = 179 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 7/177 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + P D +++G + +YG+ GW+RV + DA+++ + W++ K ++ V++ K H Sbjct: 1 MKVPEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKP-EFHDVEMMQSKIH 59 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 D++ KL GV RDAA L + + S P L + ++YW DL+G +V +G LG+ Sbjct: 60 TGDVVAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQ 119 Query: 127 VVDMMETGSNDVLVIKANLK-----DAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V DMM+ G++ +L + +E L+PF++ Q + VD T + I VDW Sbjct: 120 VSDMMDNGAHPILRVAVPQAAETTDPKAAPQELLIPFVE-QFVITVDRTAKKITVDW 175 >UniRef50_B8GN77 16S rRNA processing protein RimM n=2 Tax=Gammaproteobacteria RepID=B8GN77_THISH Length = 167 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 IVLG++ YG++GW++VFS T E I Y P + GQW++ ++ K H + +++K Sbjct: 6 IVLGRVTGLYGVQGWVKVFSETRPREEIVRYNPVLLGHEGQWRETRVVGGKAHGKGVVMK 65 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G DDRDAA L EI V QL +L +G+YYW DL+G +VVTT G LG V + ET Sbjct: 66 FQGCDDRDAAAALMGQEIAVWREQLARLPKGEYYWADLVGLEVVTTGGESLGVVDSLFET 125 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV+V+K G +ERL+P++ G+ ++ VDL ++ VDWDP F Sbjct: 126 GANDVIVVK-------GDRERLIPYVRGEFVRDVDLEAGTLTVDWDPEF 167 >UniRef50_B3E5S5 Ribosome maturation factor rimM n=2 Tax=Desulfuromonadales RepID=RIMM_GEOLS Length = 176 Score = 189 bits (481), Expect = 3e-47, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 6/175 (3%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHN 67 + + I +G++ ++GIRG LR+ S + + ES+ + I+ AG +Q+QL+ +H+ Sbjct: 4 SSDNLIAVGRISGTHGIRGQLRLHSYSGNLESLQAAKNVLIRFPAGGTRQIQLKKAAYHS 63 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 ++ L+G D + A L E+++ QLP + +YYW DL+G VVT EG LG + Sbjct: 64 GKFLLTLEGFDTIEKAQELAGAELLLQREQLPPPDADEYYWHDLLGLSVVTNEGQALGII 123 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ETG+NDV +++ + +E L+P + VI V++ T ++ + G Sbjct: 124 KDILETGANDVYLVRDD----ATKREYLIPAI-ASVISSVNIHTGTMTITPLEGL 173 >UniRef50_Q0AA98 Ribosome maturation factor rimM n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=RIMM_ALHEH Length = 170 Score = 189 bits (481), Expect = 3e-47, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 8/177 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKH 65 + D + +G++ +G+RGW++V+S TE E+I DY W+++ G W V+ + + Sbjct: 1 MEGADDIVPMGEVVGLHGVRGWVKVYSHTEPREAILDYPHWYLRRDDGDWVPVERTAGRC 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 + ++ + V+DRD A +I V LP+L EG YYW DL G TT G LG Sbjct: 61 QGKGLVAAFRDVEDRDRARAYIGLQIGVPRRDLPELPEGQYYWADLEGLAAYTTGGEPLG 120 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +V + TG+NDVLV++ G +ERLVPF+ GQ +++VDLT IE+DWDP F Sbjct: 121 RVSHLFATGANDVLVLQ-------GDRERLVPFVYGQTVRRVDLTAGRIELDWDPDF 170 >UniRef50_A1VM98 Ribosome maturation factor rimM n=15 Tax=Bacteria RepID=RIMM_POLNA Length = 202 Score = 189 bits (480), Expect = 4e-47, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 15/192 (7%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG----------- 53 ++ P D + +G++ ++G++GW+++ + D E++F + W++Q Sbjct: 12 TSSSLPDDALEVGRILDAWGVKGWVKILPHSTDPEALFSAKTWYLQTPDVKFRPGFSLFS 71 Query: 54 QWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMG 113 ++++ K H+ ++ K G+DDRDAA L I + S P +YYW DL+G Sbjct: 72 GTVSLKVDEAKIHSGAVVAKFSGLDDRDAAEALRGARIFLSRSSFPAASADEYYWVDLIG 131 Query: 114 CQVVTTEGYDLGKVVDMMETGSNDVLVIK---ANLKDAFGIKERLVPFLDGQVIKKVDLT 170 V+ EG LG V D+M TG + VL ++ ER++PF+ + KVD+ Sbjct: 132 LNVLNREGVALGCVRDLMATGPHSVLCVEYASTQEDGTSATAERMIPFVAAY-VDKVDIA 190 Query: 171 TRSIEVDWDPGF 182 + I VDW P + Sbjct: 191 GKCITVDWQPDY 202 >UniRef50_A1B8V4 Ribosome maturation factor rimM n=6 Tax=Rhodobacterales RepID=RIMM_PARDP Length = 167 Score = 188 bits (479), Expect = 6e-47, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 7/169 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + +G + ++G+RG +R+ S T I Y P + + + + + + Sbjct: 3 ERVCVGAIAGAFGVRGEVRLKSFTSQPNDIAGYSPLYTEDGN--RSFTIRLTRPVTGGLG 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +L GV+ R+ A L + D +LP L + ++Y DL+G V T G LGKV + Sbjct: 61 ARLSGVETREQAEALKGVTLWADRDKLPALPDDEFYHADLIGLSVYDTGGALLGKVRAIY 120 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D+L I + L+PF + VDL I D Sbjct: 121 DHGAGDILEIFGPGRRQV----LLLPFTRA-FVPTVDLAAGRIVADPPE 164 >UniRef50_Q31HX9 Ribosome maturation factor rimM n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RIMM_THICR Length = 181 Score = 188 bits (479), Expect = 7e-47, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 5/176 (2%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + + + I+LG++ YG++GW+++FS T+ ++I Y PW ++ +W+ Q+E + Sbjct: 1 MMSSKQDEKIILGQINGIYGVQGWVKIFSHTDPRQNILSYSPWLVKVKNEWRTFQVEEGR 60 Query: 65 HHNQD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 ++ KL+G+DDRD A CEI + QLP EEG +YW L+GCQV + EG Sbjct: 61 AQQGGKSVVAKLEGIDDRDLAREYIGCEIAILPEQLPATEEG-FYWMQLIGCQVTSVEGE 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 DLG+V +++ETG++DVL ++ L+PF+ I VD+ ++ I+VDW Sbjct: 120 DLGQVTEIVETGAHDVLRVEKQSDAGLVST--LIPFVMETFILDVDVESKQIQVDW 173 >UniRef50_A9KLM3 Ribosome maturation factor rimM n=11 Tax=Bacteria RepID=RIMM_CLOPH Length = 169 Score = 188 bits (478), Expect = 8e-47, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 95/173 (54%), Gaps = 6/173 (3%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D + +G + S++GI+G ++VF +T+D + + + +++++E+ K Q Sbjct: 1 MEDLLRVGVISSTHGIKGEVKVFPTTDDMNRFKKLKMVTLDTGKEQKELEIENVKFFKQF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K KG+D+ + ++++ L EG+++ DL+G Q +G LG++ + Sbjct: 61 VILKFKGIDNINDIEKYKGKDLLISRENAVDLAEGEFFIFDLIGLQAEEEDGNSLGELTE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++TG+NDV VIK KE L+P++D +KK+DL + + V PG Sbjct: 121 VLQTGANDVFVIKTKQ-----GKEILIPYID-DCVKKIDLNEKKLVVHLIPGL 167 >UniRef50_C4Z931 16S rRNA-processing protein n=17 Tax=Clostridia RepID=C4Z931_EUBR3 Length = 178 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 6/175 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 Q D + +G + S++GIRG ++VF +T+DA + + + + +++ S K Sbjct: 9 QRMEDLLQVGVITSTHGIRGEVKVFPTTDDAARFKKLKNVILDNGKERRDLEITSVKFFK 68 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +I+K KG+DD + + V LEE +Y+ DL+G V + EG +LG + Sbjct: 69 NQVILKFKGIDDINDVEKYKKAPLFVTRENAVPLEENEYFIADLIGLSVTSDEGEELGVI 128 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+++TG+NDV V+K G + L+P + I VD+ +++V G Sbjct: 129 DDVLQTGANDVYVVKK-----AGANDLLIPAIK-DCILDVDVENGTMKVHLLAGL 177 >UniRef50_B9QVP2 16S rRNA processing protein RimM n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QVP2_9RHOB Length = 186 Score = 188 bits (478), Expect = 9e-47, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 8/177 (4%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 + +++ K+G+++G+RG +RV +D S DY + Q ++ S + Sbjct: 1 MSSKETQKVLMAKIGAAHGVRGEVRVKPFGDDPLSFTDYGVLTTKDGKQ--SFEVVSARV 58 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 ++ K K V DR+ A L E+ +D QLP+ +E ++Y+ DL G V +G LG Sbjct: 59 QKTVVVTKFKEVTDRNRAEELNGTELYIDRDQLPETDEDEFYYSDLNGLDVKDPQGELLG 118 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 K+V + + G+ D+ I+ K +PF + + ++L + + D + Sbjct: 119 KIVAVQDFGAGDLFEIRPKR-----GKTFYIPFTK-EFVPTINLDSGFVVADLPEDY 169 >UniRef50_Q1GYT7 Ribosome maturation factor rimM n=1 Tax=Methylobacillus flagellatus KT RepID=RIMM_METFK Length = 173 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 13/176 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-----QWQQVQLESWKHH 66 + +++G++ + YG+ GW++V +TE +S+FDY W + + QWQ ++E K H Sbjct: 6 ELVIMGRIVAPYGVYGWVKVQPATEYVDSLFDYGRWMLGRGDPKQPEQWQSCEVEKAKVH 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 N +++KL+G+DDRD A + V +LP+ EEG+YYW DL+G QV + D G+ Sbjct: 66 NDLLLVKLQGIDDRDQAFSCKGMYVAVYRDELPEPEEGEYYWSDLIGLQVRNQQEVDFGQ 125 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VVD+ TG+NDVLV+K G +ERLVPF+ GQV+ +VD +++ VDWDP F Sbjct: 126 VVDVFATGANDVLVVK-------GDRERLVPFI-GQVVLEVDTDGKTMLVDWDPEF 173 >UniRef50_Q6F7I0 Ribosome maturation factor rimM n=17 Tax=Acinetobacter RepID=RIMM_ACIAD Length = 182 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 6/179 (3%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 T P D I +G++ S+YG+ GWL V+S+TE ++FDY PWFI+ WQ V ++ W Sbjct: 2 TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRW 61 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K H + +++ LK V DR+AA L I V SQLP+ + +YYW DL G V+ + + Sbjct: 62 KPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEE 121 Query: 124 ----LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG++ ++ ETG+NDV+V++A D+ +ER++P+ V+++VDL I V+W Sbjct: 122 QEVNLGQIHELFETGANDVMVVRAT-ADSVDAEERMIPW-HKDVVQRVDLEAGRIYVNW 178 >UniRef50_C8N6Y0 16S rRNA processing protein RimM n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6Y0_9GAMM Length = 182 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 100/175 (57%), Gaps = 7/175 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLESW 63 ++ + I++G++ +GIRG ++V S ES+F Y+ + ++ G+ +QL Sbjct: 1 MSHDSAD--IIVGRIVGVHGIRGQVKVHSDCRPRESLFQYRQFIARQNGRPDIALQLLRG 58 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + + ++ G++DRD A L + + QLP ++G+YYW DL+G +V +G Sbjct: 59 QTSGKGLVAAFTGINDRDQALALGGYTLYISRDQLPAPQDGEYYWADLIGLRVENRQGIT 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG+V ++ ETG+ND+LV+KA+ A E L+PF+ + ++ +DL + VDW Sbjct: 119 LGRVSELFETGANDILVVKADNSKA----EILIPFVRPRYVEAIDLANGLMRVDW 169 >UniRef50_Q9FHG3 Genomic DNA, chromosome 5, TAC clone:K11I1 n=2 Tax=Arabidopsis thaliana RepID=Q9FHG3_ARATH Length = 653 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 96/195 (49%), Gaps = 15/195 (7%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKA----GQWQ 56 + + ++ + +D + +G + +G++G + + +T+ + ++++ + Sbjct: 69 AVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLKQQLLGQDKID 128 Query: 57 QVQLESWKHHN--QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGC 114 +V+L + H + I+K +G+DD D L ++ + P+L+EG++Y +DL+G Sbjct: 129 EVELVEGRPHPAQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDEGEFYSRDLVGM 188 Query: 115 QVVTTE-GYDLGKVVDMMETGSNDVLVI------KANLKDAFGIKERLVPFLDGQVIKKV 167 +V+ E G +G V ++ + G ND+L + + +A + +PF+D ++ V Sbjct: 189 RVLLKETGQLVGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTNQLVWIPFVDA-IVPDV 247 Query: 168 DLTTRSIEVDWDPGF 182 DL + + + G Sbjct: 248 DLERKEMYITPPKGL 262 >UniRef50_A4YK99 Ribosome maturation factor rimM n=8 Tax=Alphaproteobacteria RepID=RIMM_BRASO Length = 199 Score = 185 bits (471), Expect = 6e-46, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 I + ++G+++G+RG +R+++ TED ++ Y P + + ++ + Sbjct: 2 MSKLICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGS--RSFEVTKAREAKDH 59 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ KG+ DR+AA L E+ V +LP+ ++ +YY DL+G TT G LG+V+ Sbjct: 60 LVASFKGITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLA 119 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D++ I ++PF + V+ VDL + ++ Sbjct: 120 IHNFGAGDIIEIAPPSGS-----TLMLPFTNA-VVPTVDLAGGRVIIELPD 164 >UniRef50_D1IBQ5 Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=3 Tax=rosids RepID=D1IBQ5_VITVI Length = 665 Score = 185 bits (470), Expect = 8e-46, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 22/198 (11%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQK----AGQWQQVQL 60 T++ + + +G + S +G++G +RV +T+ E + ++++ ++V+L Sbjct: 70 TSKVESEFVEVGYISSVHGLQGEIRVKPNTDFPELRFAEPGIRWLRQQFSGKETIREVEL 129 Query: 61 ESWKHHNQ--DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 + H I+K G+D + A L ++V P+LEEG++Y +DL+G +V Sbjct: 130 VEGRGHPGQKTWILKFGGIDTVEEAKQLVGSSLLVREDDRPELEEGEFYSRDLLGMRVTL 189 Query: 119 TE-GYDLGKVVDMMETGSNDVLV------IKANLKDAFGIKE-------RLVPFLDGQVI 164 E G +G VV++ TG+ND+L +K E VPF++ ++ Sbjct: 190 KETGEPVGTVVNVFSTGANDLLQVMLDPSVKTPDHTGNPKSETGVSGPLVWVPFVEA-IV 248 Query: 165 KKVDLTTRSIEVDWDPGF 182 VD+ R +++ G Sbjct: 249 PNVDMNKREMQITPPKGL 266 >UniRef50_B6R649 16S rRNA processing protein RimM n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R649_9RHOB Length = 185 Score = 184 bits (469), Expect = 8e-46, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 89/178 (50%), Gaps = 9/178 (5%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 A P D I++ ++G+++GIRG +RV +D S DY ++ ++ +++ + Sbjct: 1 MANKPEDRILMAQIGAAHGIRGEVRVKPFGDDPLSFGDYGK--LESEDGSRKFKVKRARV 58 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE-EGDYYWKDLMGCQVVTTEGYDL 124 ++ K +GV+DR+ A L ++ + +LP+ E E ++Y DL+G + + + Sbjct: 59 QKNVVVTKFEGVNDRNEAEALNGLKLYIPRERLPETEDEDEFYHSDLIGLKALDENKEQI 118 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V+ +++ G+ D++ I K L PF V+ ++L +EV GF Sbjct: 119 GTVLALLDFGAGDLIEIAPKS-----GKSLLFPFTKA-VVPVINLKEGFVEVHAPEGF 170 >UniRef50_C3XB69 Ribosome maturation factor rimM n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XB69_OXAFO Length = 180 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 3/177 (1%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 ++ + P D I +G + +YGIRGW ++ + +AE++ + W++ V++ Sbjct: 3 NRAGHIEVPSDLIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLDLPD-MHNVKVM 61 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + +++ G+D+R+AA L I + S+ P+L E +YYW DL+G V G Sbjct: 62 QARRQGDEIVAHFSGIDNREAAEALRGSVICISRSRFPELPEDEYYWVDLIGLSVFNLRG 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 LG V +++ G++ VL + + ++E L+PF+D Q I VD I VDW Sbjct: 122 DALGTVRGLIDNGAHPVLQVAVEDSEN-KVRELLIPFVD-QFIDDVDREGGKITVDW 176 >UniRef50_A5D1J5 Ribosome maturation factor rimM n=3 Tax=Peptococcaceae RepID=RIMM_PELTS Length = 170 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I +GK+ + G RG +RV T+ E + + G + HH + Sbjct: 3 ESYIRIGKILKTQGNRGAVRVLPLTDYPERFKNMSRVQVSLKGFRTFFTVGEVYHHKNFI 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 IIK K ++ AA L + V +L L E +Y D++G +V T G +LG+V D+ Sbjct: 63 IIKFKEIESMAAAEKLKGAFLEVGRDELVPLPEDRFYIFDIIGLKVYDTGGRNLGRVTDV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TG+NDV V+ G K L+P L QV+K V+LT + V+ G Sbjct: 123 LQTGANDVYVVDT------GGKPLLIPALK-QVVKSVNLTEGKMVVELPEGL 167 >UniRef50_B6J1N3 Ribosome maturation factor rimM n=6 Tax=Coxiella burnetii RepID=RIMM_COXB2 Length = 168 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 7/174 (4%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 P D +++G++ YG+RGW++V S T +++ ++ W IQ +WQ ++L++ K H Sbjct: 2 KPNDKVIIGRLARPYGLRGWIKVVSFTHPIDNLLNHPTWQIQHNNEWQPLKLQAGKLHEP 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++KL+ +DD + A TN I ++ L L+EGDYYW DL+G VV T G +LG V Sbjct: 62 FLVVKLENIDDPETAKHYTNDLIAIERGALGALKEGDYYWTDLIGLAVVNTHGIELGTVD 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETGSNDVLV+++ +ERL+P+ I+ +DL + I V+WD F Sbjct: 122 SLIETGSNDVLVVRSKE------RERLIPYT-SYTIQSIDLEKKIIVVEWDADF 168 >UniRef50_C5V5Y4 16S rRNA processing protein RimM n=2 Tax=Gallionellaceae RepID=C5V5Y4_9PROT Length = 186 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESW 63 L + +++G++ S++GI+GW+++ +E +S+ Y+ W++ + G W++V + Sbjct: 13 LQPKVSEPMVIMGRVASAFGIKGWVKIQPFSEYVDSLLGYKTWYLGHENGPWREVTVAQC 72 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H++ + + DR AA L I V S LP EEG+YYW DL+G V+ G Sbjct: 73 ETHDKTLAAQFPDCPDRTAAEKLKGLLIAVPRSSLPTQEEGEYYWADLIGMSVINGAGET 132 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V++++ETG+NDVL+++ N + L+PFL+ VI VD+TT++I+V+W F Sbjct: 133 LGTVIELLETGANDVLIVRGN------GPDVLIPFLNS-VIGPVDVTTKTIQVNWSADF 184 >UniRef50_C0ZFN2 Probable 16S rRNA processing protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFN2_BREBN Length = 175 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 10/181 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ---PWFIQKAGQWQQVQLE 61 + + +GK+ +++G+RG +RV +T+ + F F + ++++ Sbjct: 1 MNTLSQNSFYGVGKLVNTHGLRGEVRVTPTTDFPDQRFRKGNELYLFHPTLSEPLKLKIA 60 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 S + H I+ G + + E+ + + L +LEE ++Y L+GC VVT EG Sbjct: 61 SRRPHKNFEIVSFHGFEHINDIEKYKGGELKIPAEALMELEEDEFYIHQLVGCVVVTDEG 120 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +LGK+VD+M+ G+NDV V+K E L+P++D + IK+VD+T + + G Sbjct: 121 EELGKIVDVMQPGANDVWVVKGKRG------EILLPYID-ECIKEVDITNKRVVCHLMEG 173 Query: 182 F 182 Sbjct: 174 L 174 >UniRef50_B8FNP4 16S rRNA processing protein RimM n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FNP4_DESAA Length = 169 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D + +G++ +GIRG + + S ++ + ++ G+ Q+ LES + + + Sbjct: 5 DFVEVGQVAGVHGIRGAVLLRSFADNPDIFAKGGKLLLKGPGENIQEYILESSRPYKGKL 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + +L+GV DR A L I+V LP+LE +YYW DL+G +V +G LG + + Sbjct: 65 LAELQGVSDRSGAEALKGRMILVHRDALPELEPDEYYWFDLIGMEVAAPDGSRLGVLDAI 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +ETG+NDV VIK G KE L P L V+ +DL + VD G Sbjct: 125 IETGANDVYVIKD------GEKEILAPAL-PWVVLSIDLEAGVMIVDLPEGL 169 >UniRef50_B2J3X9 Ribosome maturation factor rimM n=16 Tax=Cyanobacteria RepID=RIMM_NOSP7 Length = 235 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--KAGQWQQVQ 59 + Q + + +GK+ S G+ G L+V+ ++ E ++ + Q +Q Sbjct: 45 NTQSPVPNLDNWLEIGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLHLDGTEPQPIQ 104 Query: 60 LESWKH--HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 L + ++ + +IKL GV++ D A L C+++V +S PQL E +Y+ DL+G +V Sbjct: 105 LLTGRYISNKNLYVIKLAGVENCDQAEALRGCKLMVPASDRPQLAEDEYHVLDLIGLEVF 164 Query: 118 TT-EGYDLGKVVDMMETGSNDVLVIK--ANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 G +G VVD++ G ND+L +K + K L+PF++ + VDL + I Sbjct: 165 MQASGELVGTVVDIIPAG-NDLLEVKLHPSFTTDKKQKTVLIPFVEA-IAPVVDLKSNRI 222 Query: 175 EVDWDPGF 182 E+ PG Sbjct: 223 EITPPPGL 230 >UniRef50_Q21LG3 Ribosome maturation factor rimM n=3 Tax=Gammaproteobacteria RepID=RIMM_SACD2 Length = 183 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 107/182 (58%), Gaps = 4/182 (2%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 + I +G++ +GI+GW+++ S T+ +++ +Y P ++ ++ ++ + Sbjct: 3 TPVEAKKSNLITVGRITGVFGIKGWVKLKSFTDPQDNVLEYSPLLLKTKHGVKECEIAEY 62 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT---E 120 + Q ++++LKGVDDR+AA L ++ +D S LP+L++ D+YW L G +VVT Sbjct: 63 QFRPQGLVVRLKGVDDRNAAEALAPVDVAIDKSLLPELDDDDFYWHQLEGLRVVTIYEGN 122 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 DLG V +M TG+NDVL +K + ++RLVP++ +KKVDL+ I VDWDP Sbjct: 123 TQDLGVVSKVMATGANDVLEVK-PDAQSIDDRDRLVPYVLDLYVKKVDLSAECITVDWDP 181 Query: 181 GF 182 F Sbjct: 182 EF 183 >UniRef50_Q1MYQ9 16S rRNA-processing protein n=1 Tax=Bermanella marisrubri RepID=Q1MYQ9_9GAMM Length = 176 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 66/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 ++ P + +GK+ YGI+GW++V+S TE E++F Y W + K GQ V++ W+ Sbjct: 1 MSKIPDNFTKIGKITGVYGIKGWVKVYSYTEPKENVFSYDGWHLVKKGQLVPVKVREWRT 60 Query: 66 HNQDMIIKLKGVDDRDAA-NLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 + ++ L DR+ A C++V+D QLP+ EG++Y+ L G VVTT+ L Sbjct: 61 QGKGLVAALDDCQDRNQAQEQYVQCDVVMDKGQLPEPGEGEFYYHQLEGLLVVTTDDVVL 120 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+V + TG+NDVLV+K K++ +ER +P+ + K VDL I VDWDP F Sbjct: 121 GRVDYLFNTGNNDVLVVK-PCKESLDGRERWLPYTN-DCTKDVDLKQGFIRVDWDPEF 176 >UniRef50_D1CCM3 16S rRNA processing protein RimM n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCM3_THET1 Length = 179 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 P + +++G++ S +G+RG ++V T++ E + ++ A ++ S + Sbjct: 10 PHPPDNYVIVGRILSPHGVRGEVKVEPITDNPERFKQLRQVYVGDA----LHKVVSVRVL 65 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++++ +G++ + A L+ + + Q+ L E +Y DL G +VV+T G LG Sbjct: 66 PKFVLVRFEGMESPEQAKALSGMYLYIPKEQVMPLPEDTFYHFDLQGMEVVSTSGEPLGT 125 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ +NDV V+ E L+P + V+K VDL R + V+ PG Sbjct: 126 LREILIREANDVFVVDHPRG------EILIPAIK-DVVKDVDLENRRLVVELIPGL 174 >UniRef50_D0KVJ7 16S rRNA processing protein RimM n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVJ7_HALNC Length = 178 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 111/184 (60%), Gaps = 13/184 (7%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA------GQWQQV 58 L +P D +V+G +G ++G++GW + + T A+ I Y+ WF++ G+W Sbjct: 2 LKPPSPADSVVIGVIGRAFGVKGWSWITTYTRPADGITQYRQWFVRSPADGGDAGKW--Y 59 Query: 59 QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 ++ + +Q ++ KL+G+DDR A LT EI+V + LP++ EG+YYW+DL GC+V Sbjct: 60 RVTKFAAQSQGIVAKLEGIDDRTQAEALTGAEILVPTDALPKVAEGEYYWRDLTGCRVQH 119 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G D G V +++ETG+NDVLV+ G +ERL+PF+ V+ +++ R I VDW Sbjct: 120 VSGQDFGVVQELLETGANDVLVV-----GGEGQRERLIPFIPDDVLVSINIDQRLIVVDW 174 Query: 179 DPGF 182 DP F Sbjct: 175 DPDF 178 >UniRef50_Q493M2 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=RIMM_BLOPB Length = 189 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 75/182 (41%), Positives = 124/182 (68%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 ++K+ P+ P+V+G++ +YGI GW+R+ S TE ++IF Y P+FI W+++ L Sbjct: 8 INKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFL 67 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + WK + I+K++GV +R++A L+ C I++D +Q P + + +YYWKDL+GC V+T + Sbjct: 68 DKWKLIGKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQ 127 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G LG ++ ++ET +NDVLV+K + + IK L+PFL +VIK ++L TR++ VDWDP Sbjct: 128 GVLLGDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRTVTVDWDP 187 Query: 181 GF 182 F Sbjct: 188 NF 189 >UniRef50_C8WWB1 16S rRNA processing protein RimM n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWB1_ALIAD Length = 177 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAG--QWQQVQLESWKHHNQD 69 +G + +G+RG +RV+ T+ E F +++ G ++++ S + H Sbjct: 4 YYTVGVVTKPHGLRGEVRVYPRTDFPEERFSPGSRLWLRPPGSEPVAELEVRSGRQHQNL 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I+ KG E+ V L L EG YY+ L+G +V++ EG LG + + Sbjct: 64 WIVGFKGYHAISDVESWRGYELCVPEDMLHPLPEGAYYYHQLVGLEVISDEGEPLGVLAE 123 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+NDV V++ G + L+P + VI VDL R + V PG Sbjct: 124 VWTPGANDVYVVRKP-----GQPDLLLPAIR-DVILSVDLEARRMTVHLLPGL 170 >UniRef50_B2T606 Ribosome maturation factor rimM n=57 Tax=Burkholderiaceae RepID=RIMM_BURPP Length = 248 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 7/188 (3%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDA---ESIFDYQPWFIQKAGQWQQ 57 M + P D + +G + +YG++GW++V + + +++ + W++ K + + Sbjct: 62 MRMETVESWPADAVEVGAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLIKGQERKS 121 Query: 58 VQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV 117 K H+ ++ L GV DRD A L + + S+ P L ++YW DL+G VV Sbjct: 122 APSLQAKMHSDSVVAHLGGVTDRDVALALRGSRVYISRSEFPALGADEFYWVDLLGLDVV 181 Query: 118 TTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGI---KERLVPFLDGQVIKKVDLTTRSI 174 G +LGKV DM++ G++ VL I+ D G ERL+PF+ G +K VD + I Sbjct: 182 NVAGVNLGKVADMIDNGAHSVLRIEYPDTDKSGKPVIGERLIPFV-GVFVKTVDQAAKQI 240 Query: 175 EVDWDPGF 182 VDW+ + Sbjct: 241 TVDWEADY 248 >UniRef50_A5EXZ2 Ribosome maturation factor rimM n=1 Tax=Dichelobacter nodosus VCS1703A RepID=RIMM_DICNV Length = 175 Score = 181 bits (461), Expect = 8e-45, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 6/166 (3%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I LG++ +G+RGW+++ S E+IF+Y + + Q ++L + + +I Sbjct: 7 LIALGRIIGVHGVRGWVKIHSECRPREAIFNYSVFQATRHHHAQTLKLLDARRSGKSLIA 66 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + DRDAA L + V + LPQL+ G YYW D++G V+ G LGKV D+ E Sbjct: 67 LFADICDRDAALQLNGFTLNVTRADLPQLKNGQYYWTDVLGLTVINRSGEHLGKVCDIFE 126 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 TG+NDVLVI +E L+PF+ + I ++D + + VDW Sbjct: 127 TGANDVLVI------NKDGQEYLIPFISERYIDRIDFENKYLYVDW 166 >UniRef50_A7BX44 16S rRNA-processing protein rimM n=1 Tax=Beggiatoa sp. PS RepID=A7BX44_9GAMM Length = 168 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 7/174 (4%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 + I++G++ YG+ GW+++FS T I +Y PW + + GQWQ + + K H + Sbjct: 2 SAEKRIIIGRINGLYGVSGWVKIFSYTTPITKILEYSPWQLCQKGQWQILSMYEGKAHGK 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +I +L+ DRD A L +I + SQLP + + +YYW DL+G V+ + LG V Sbjct: 62 GIIARLESSHDRDEAVRLLGADIAIFRSQLPPVSKNEYYWNDLLGLTVINHDNITLGIVD 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+ND+LVIK G KE L+PF+ QVI ++DLT R I VDWD F Sbjct: 122 HLLETGANDILVIK-------GEKECLIPFVLEQVILEIDLTQRIIRVDWDKDF 168 >UniRef50_B0TH66 Ribosome maturation factor rimM n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RIMM_HELMI Length = 171 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 7/175 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA--GQWQQVQLESWKHHN 67 + +G++ ++ G+RG +R++ TE + + F++ G + + + S Sbjct: 1 MAKRVRVGQIVNTQGVRGQVRLWPLTEKPSRFNEIKRVFVEAPPQGAPEVLTITSAHPLK 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 + +I+ + + D A L C + + ++P E YY L G V T G LG++ Sbjct: 61 KLVIVSFQEISDMTQAERLKGCYLTIPVEEVPAPEPDSYYHFQLEGLSVFTEAGERLGQI 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ETGSNDV V++ A E L+P L V+ KVDL ++ V G Sbjct: 121 EEILETGSNDVYVVR----QASPPGEVLIPALKS-VVLKVDLAAGTMTVRLPDGL 170 >UniRef50_Q1Q8A5 Ribosome maturation factor rimM n=3 Tax=Psychrobacter RepID=RIMM_PSYCK Length = 177 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 104/182 (57%), Gaps = 5/182 (2%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 MS A A + +G++ YGI+GWL VFS T+D +IFD +PW+++ A + + + Sbjct: 1 MSSAPNASALMK---IGQLKKPYGIKGWLWVFSETDDRTAIFDIKPWWMKTATGMKPLTV 57 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 ++W+ ++ + + + DR+ A + + V+ LP+ E +YYW DL+ +V+ + Sbjct: 58 KAWREQGTGIVAQFEQIPDRNVAETMNGVTLWVEQDILPEPAEDEYYWSDLVSLRVMNEQ 117 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG + +M ETG++ ++ + A D+ +ERL+P+ V+K VDLT +++ V W Sbjct: 118 DEYLGDITEMFETGAHAIMRVAAT-TDSLDKEERLIPWHKQTVVK-VDLTEKTVLVAWPS 175 Query: 181 GF 182 + Sbjct: 176 DY 177 >UniRef50_A9VT80 Ribosome maturation factor rimM n=43 Tax=Bacillales RepID=RIMM_BACWK Length = 171 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ---PWFIQKAGQWQQVQLESWKHHNQ 68 +GK+ +++G++G +RV S T+ E + + +K + V++ S + H Sbjct: 3 KWFNVGKIVNTHGVKGEIRVISRTDFPEERYKVGNTLYIWDEKGTDYLTVKVTSHRQHKT 62 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ L+G ++ D L I V QL +L EG+YY+ +++GC VVT EG LG + Sbjct: 63 FDLLTLEGYNNVDEVEKLKGSLIKVPEEQLGELAEGEYYYHEIIGCNVVTEEGEALGTIK 122 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ G+NDV VIK ++ L+P++D V+ +V++ + + + G Sbjct: 123 EILSPGANDVWVIKRP-----KGQDLLIPYID-DVVLQVNIENKLVTIHVMEGL 170 >UniRef50_C0GHL9 16S rRNA processing protein RimM n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHL9_9FIRM Length = 169 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 + +GK+ +++G++G ++V +++ E I + F++K G + H + Sbjct: 1 MEQSVAIGKVVTTHGVKGGMKVQPLSDNPERIKELIRVFVEKDGHSAARDVVEAFVHGRA 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+L+G+D DAA L + + S+ L E YY ++G V T +G LG +++ Sbjct: 61 WVIRLEGIDSCDAARELVGAMLTIPISERLPLPENSYYLDQIIGLDVYTVDGTYLGSIIN 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETGSNDV V++ + ++ L+P L V+K +DL T +EVD G Sbjct: 121 VLETGSNDVYVVE----NKADGRQVLIPALKA-VVKSIDLDTGRMEVDPPEGL 168 >UniRef50_D1U5V9 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U5V9_9DELT Length = 199 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 7/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW-QQVQLESWKHHNQDMI 71 I++G + +GIRG + + S + ++Q G+ + SW+ H ++ Sbjct: 6 LILVGGVVRPHGIRGEICIKSHADSPSLFGLVAALYLQDKGKPPIPHAVRSWREHKGMVL 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L GVDDRD A L E++V + LP+L+EG++Y LMGC+V +G D+G + Sbjct: 66 LTLDGVDDRDKAEALRGREVLVREADLPELDEGEHYLYQLMGCRVTLADGTDVGVLEHFF 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETG D VI E ++P + + + VDL I +D G Sbjct: 126 ETGEQDTWVIINEAGT-----EIMLPAV-PEFVLDVDLDAGVIVIDPPAGL 170 >UniRef50_D1KCL6 16S rRNA processing protein RimM n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KCL6_9GAMM Length = 190 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 65/171 (38%), Positives = 103/171 (60%), Gaps = 8/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +++GK+ +GI+GW++VFS T ++I YQPW I+ GQWQ + + + + ++ Sbjct: 28 KRLLVGKINGLFGIQGWVKVFSHTNPRKNILSYQPWHIEVNGQWQTLDIIKGREQGKTLV 87 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++K V D D A +I ++ SQLP+L +G+YYW+DL+G V+ E LGKV ++ Sbjct: 88 AQIKDVHDMDQARTFIGIDIYINKSQLPKLNKGEYYWEDLIGLNVINQEKIVLGKVSGLV 147 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +TGSN VLV+ G KE VP+++ +I VD+ + I VDWD F Sbjct: 148 DTGSNSVLVV-------NGRKEHWVPYIEPFLI-SVDIDKQQIVVDWDDNF 190 >UniRef50_A4IM75 Ribosome maturation factor rimM n=114 Tax=Bacilli RepID=RIMM_GEOTN Length = 175 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 9/179 (5%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ---PWFIQKAGQWQQVQLESW 63 + +GK+ +++GIRG +RV S T+ E + F + + +V ++S Sbjct: 1 MKVMERWFNVGKIVNTHGIRGEVRVISRTDFPEERYKKGNKLYIFRECDTEPIEVTVKSH 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H ++ +G D + + V SQL +L EG+YY+ +++ C VVT G Sbjct: 61 RVHKSFDLLSFEGYDSINDVEPFKGAMLKVPESQLGELNEGEYYFHEIIDCTVVTEAGET 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +GKV +++ G+NDV V++ + L+P++D V+ VD + I + G Sbjct: 121 IGKVKEILTPGANDVWVVRRQ-----DGTDALIPYID-DVVMHVDPERKIIIIRPMEGL 173 >UniRef50_C7I5F5 16S rRNA processing protein RimM n=1 Tax=Thiomonas intermedia K12 RepID=C7I5F5_THIIN Length = 180 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 98/177 (55%), Gaps = 5/177 (2%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG---QWQQVQLESW 63 P D ++G + ++G+RGW++V A ++ + W++ + G + + + Sbjct: 1 MAIPDDLYLVGHILDAWGVRGWVKVAPDAPQATALLKSKTWWLSRPGFENEPTPIAVRLV 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + H ++ L+G +DR A L +I V + P +EG++YW DL+GC+V + EG D Sbjct: 61 RRHGSALVALLEGPEDRSGAEALRGRQIAVRRADFPPPDEGEFYWADLIGCEVRSPEGAD 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDA-FGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG+V+ +ME+ ++ VL ++ A +ERL+PF++ ++ VDL ++I WD Sbjct: 121 LGRVIGLMESAAHAVLRVQIPQASADAKPRERLIPFVEAYIV-SVDLPAKTIIALWD 176 >UniRef50_C9R885 16S rRNA processing protein RimM n=1 Tax=Ammonifex degensii KC4 RepID=C9R885_AMMDK Length = 169 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G++ + +G RG L+V T+ E + + G+ ++ + H + ++ Sbjct: 4 DFITVGEIVAPHGYRGALKVLPLTDFPERFLGMKEAMVLLKGRRTTYTVKRARLHGKFVL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++L GV+ + A L + V ++ L G YY DL+G +V T EG LGK+ ++ Sbjct: 64 LELVGVERMEEAEALRGGLVQVPREEVYPLPPGHYYIFDLIGMEVFTEEGAFLGKIEAVL 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T +NDV +++ KE L+P L V+ VD+ R + V G Sbjct: 124 STRANDVFSVRSPE-----GKEILIPALK-TVVCSVDVPGRKMTVKLPEGL 168 >UniRef50_Q5FA58 Ribosome maturation factor rimM n=31 Tax=Neisseriaceae RepID=RIMM_NEIG1 Length = 169 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 7/172 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + + +G + +GI+GWL++ ++TE ++S+ DY W + K G+ V LE+ K Sbjct: 1 MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLAKDGKTVSVTLEAGKVV 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 N ++ +K +G+DDRD+A L I + EE +YYW DL+G VV + LGK Sbjct: 61 NGELQVKFEGIDDRDSAFSLRGYTIEIPREAFAPTEEDEYYWADLVGMTVVNKDDTVLGK 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V ++METG+NDVL+I + L+PF+ Q I+ VD +++I DW Sbjct: 121 VSNLMETGANDVLMIDGEHG------QILIPFV-SQYIETVDTGSKTITADW 165 >UniRef50_Q11CR1 Ribosome maturation factor rimM n=3 Tax=Phyllobacteriaceae RepID=RIMM_MESSB Length = 212 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 10/178 (5%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M+K +P+ L +G+++GI+G +RV + TED ++ Y P + + +Q+ Sbjct: 5 MAKPKAPAGIENPVQLAVIGAAHGIKGEVRVKTFTEDPMALGSYGPLHMVDG---RVLQV 61 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTT 119 + + + +I++ KGVD R+AA L + VD S LP+ LEE ++Y+ DL+G V+ Sbjct: 62 AAIRPAKEVVIVRFKGVDGRNAAEALNGEALFVDRSALPEKLEEEEFYYADLIGMAVLDE 121 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G +LG+VV + G+ D+L + N ++PF + +DL+ +I +D Sbjct: 122 KGENLGRVVAVHNFGAGDLLEFRENSGP-----TVIIPFTRDA-VPDIDLSNNTIRID 173 >UniRef50_C9KKT7 16S rRNA processing protein RimM n=2 Tax=Veillonellaceae RepID=C9KKT7_9FIRM Length = 180 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 A D + +GK+G+++GI G +R+ T+ E D + + + +ES K+H Sbjct: 11 KNAAKDRVTIGKVGAAHGIHGEMRIIPLTDFTERFADMKEVMVGDE----LLHIESCKYH 66 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 Q +++K + R+ A LT + VD S+ LEEG++Y D++G V G LG Sbjct: 67 KQFILLKFREYPVREDAMRLTGRLLTVDRSEAVPLEEGEFYTFDIIGLTVYDETGNTLGT 126 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 V +++ TGSNDV + +E L+P L V+K +D+ + VD Sbjct: 127 VENVLRTGSNDVYQARRP-----DGRELLIPALKA-VVKVIDVAGGRMVVDLPE 174 >UniRef50_B9N9D0 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9D0_POPTR Length = 673 Score = 179 bits (455), Expect = 4e-44, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 94/199 (47%), Gaps = 23/199 (11%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQK----AGQWQQVQL 60 T+++ + + +G + + +G++G + V +T+ E ++++ ++V+L Sbjct: 77 TSKSESEFVEVGYISNVHGLQGEISVKPTTDFPELRFSKPGRRWLRQLVSGKDVIREVEL 136 Query: 61 ESWKHHNQD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 + H+ I+K G+D D A LL ++V + P+LEEG++Y +DL+G +V+ Sbjct: 137 VEGRGHHGRKSWILKFGGIDTVDRAKLLVGSTLLVREYERPELEEGEFYSRDLIGMRVIL 196 Query: 119 TE-GYDLGKVVDMMETGSNDVLVI--------------KANLKDAFGIKERLVPFLDGQV 163 E G +G VV++ + G ND+L + + VPF++ + Sbjct: 197 KETGECVGTVVNVFDNGGNDLLQVMLYTSSDVPGGTGKSKPAEAGVSGHLAWVPFVEA-I 255 Query: 164 IKKVDLTTRSIEVDWDPGF 182 + V++ R + + G Sbjct: 256 VPDVNMNEREMRITPPKGL 274 >UniRef50_Q3BVY9 Ribosome maturation factor rimM n=21 Tax=Gammaproteobacteria RepID=RIMM_XANC5 Length = 180 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 8/181 (4%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLE 61 + + I+LG++ ++G++G L++ S TE +IF YQPW ++ GQ V Sbjct: 7 ESTQMKQTERRILLGRIVGAFGVKGELKLESWTEPRTAIFRYQPWIVRAPSGQESVVSGV 66 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + +++I GV DRD + EI V S LP + +YYW DL QV T EG Sbjct: 67 RGRDQGKNLIAVFPGVTDRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEG 126 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG V + TGSNDV+V++ G +ER++PF+ +K VD I VDWDP Sbjct: 127 VKLGTVSHLFSTGSNDVVVVR-------GDRERMIPFVFPDFVKSVDFDANLIVVDWDPD 179 Query: 182 F 182 F Sbjct: 180 F 180 >UniRef50_B0K9W5 Ribosome maturation factor rimM n=11 Tax=Clostridia RepID=RIMM_THEP3 Length = 167 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 8/174 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQ 68 D +GK+ S++GI+G ++V+ T E +D + +I Q + +E K ++ Sbjct: 1 MADYYNVGKVTSAHGIKGEVKVYPLTNVPERFYDLEYVWIFDDQQRPHKYDIEYVKIISK 60 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 + +KLKG+D R A L + VDS +LEE +Y+ KDL+G +V T EG LG +V Sbjct: 61 GVCVKLKGIDTRGDAEKLKGAFLKVDSQNALELEENEYFIKDLVGMKVYTEEGSFLGTLV 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++++TG+NDV VIK +E L+P + +V+KKVD+ + + V G Sbjct: 121 EVLKTGANDVYVIKTEE------REILIPAIK-EVVKKVDVDNKVMVVHLLEGL 167 >UniRef50_Q07UU6 Ribosome maturation factor rimM n=10 Tax=Bradyrhizobiaceae RepID=RIMM_RHOP5 Length = 176 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 I + ++G+ +G+RG L+++ TED ++ DY P Q ++ ++E+ + ++ Sbjct: 4 KRICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGS--RRFEVETAREAKDHLV 61 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 LKGV RD A L E+ +D QLP+ +EG+YY DL+G VT G LGKV + Sbjct: 62 ATLKGVASRDDAVRLNGIELYIDRDQLPETDEGEYYHADLIGLAAVTAAGEPLGKVAAIH 121 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G+ D++ I L+PF + V+ VDL + ++ Sbjct: 122 NFGAGDIIEIAPPSGP-----TLLLPFTNA-VVPTVDLEGGRVVIEMP 163 >UniRef50_Q044E4 Ribosome maturation factor rimM n=11 Tax=Lactobacillus RepID=RIMM_LACGA Length = 173 Score = 179 bits (454), Expect = 5e-44, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 91/173 (52%), Gaps = 8/173 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +GK+ S +G++G ++V ++T+ E + + FI+ + Q+Q++ ++ + H Q Sbjct: 3 EYFEVGKILSPHGLKGEVKVNATTDFPEERLANGSRLFIKNSDQYQELIVDGARRHKQFY 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVD 129 ++K + +D D A + E+ V + +L EG YY+KD++ C V E G LG + + Sbjct: 63 LVKFEEIDGIDQAEKVCGKELYVAETDQQELPEGSYYFKDILNCPVYDAETGEKLGVLAN 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+ND+ IK K +P ++ V+ KVDL + IEV G Sbjct: 123 IETPGANDIWEIKPEH-----GKSFWIPNIES-VVNKVDLANKRIEVTLLEGL 169 >UniRef50_Q67PD9 Ribosome maturation factor rimM n=1 Tax=Symbiobacterium thermophilum RepID=RIMM_SYMTH Length = 174 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 9/179 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + Q+ D I +G++ + +G+RG +RV+ +T+ E + I + + + Sbjct: 1 MAGQSRPDLIRIGQVTAPHGVRGAVRVYPTTDFPERFVTLKRVMIDGPDRAVGARFRGF- 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +I++L+G+ DR+ A L +++V ++ L EG YY D++G +VV +G L Sbjct: 60 -VKNLVILELEGITDRNQAERLRGADLLVPREEVHPLPEGYYYDFDIIGIEVVDPDGRQL 118 Query: 125 GKVVDMMET-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+VV++ T +D+ V++ K LVP + +K++DL T + +D PG Sbjct: 119 GRVVEVDHTSPVHDLYVVET-----APGKRYLVPAVRR-FVKEIDLETGRMVIDPIPGL 171 >UniRef50_C4GME9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GME9_9NEIS Length = 169 Score = 178 bits (453), Expect = 7e-44, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 98/172 (56%), Gaps = 7/172 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + + +G + ++GI+GW++V S+TE +S+ DY W + K + ++ES K Sbjct: 1 MSNTQNWVAMGYIKGAFGIKGWIKVQSNTEYTDSLLDYPQWRLSKGKEHILAEVESGKMA 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ +KL + DRDAA LL I V Q EEG+YYW DL+G V EG LG+ Sbjct: 61 GDELQVKLAHIHDRDAAALLRGYTIEVPREQFEPTEEGEYYWADLVGMAVKNREGIHLGE 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 V+++METG++D+L+++ E+L+PF++ Q I VD R I DW Sbjct: 121 VINLMETGAHDILIVRGEHG------EKLIPFVE-QFIDNVDNENRQITCDW 165 >UniRef50_C4V0K2 Possible 16S rRNA processing protein n=2 Tax=Selenomonas RepID=C4V0K2_9FIRM Length = 169 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 11/180 (6%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M++ L+ P + IV+G++G+ +G+RG LR+ T+ E + + + Sbjct: 1 MTR-LSQSVPDERIVIGRIGAPHGVRGDLRIIPLTDFPERFAQMREVMAGDE----LLHI 55 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + K +++++ + D R+ A LT + V ++ L+EG+YY D++G V + Sbjct: 56 TAVKPQGRNILMHFREYDVRETAQRLTGRVLTVPRAEAAPLDEGEYYVFDIVGLTVRDED 115 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G +LG V D++ TGSNDV ++ E LVP L V++ +D + V Sbjct: 116 GNELGTVTDVLRTGSNDVYAVRDAEGH-----ELLVPALR-TVVQNIDTAGGCMTVRLPE 169 >UniRef50_C8W5A1 16S rRNA processing protein RimM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5A1_DESAS Length = 173 Score = 177 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 90/178 (50%), Gaps = 5/178 (2%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + ++ + I +G++ ++ G RG++RV T+ E + + G ++ + E Sbjct: 1 MDKESSKNYITIGEIVNTQGNRGYVRVLPLTDFPERFKGMKQVSVYTKGAYRLMHPEDVY 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +H + ++IK K + D AA L + V+ + L G YY +LMG V +EG Sbjct: 61 NHKKFVVIKFKEIPDMTAAESLKGGLLQVEPKDIVPLPRGSYYVFNLMGMNVYNSEGRHY 120 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G++ D++ TG+NDV ++ + ++ L+P L QV+K +D+ + + VD G Sbjct: 121 GRIKDILTTGANDVYIVWYEAE----KRDLLIPALK-QVVKLIDVENKKMVVDLPEGL 173 >UniRef50_B7RJU4 16S rRNA processing protein RimM n=4 Tax=Rhodobacteraceae RepID=B7RJU4_9RHOB Length = 194 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 7/179 (3%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES 62 +Q A A D I +G + SYG+RG LR+ S E I +Y P + + + L Sbjct: 7 RQFGAFAMSDKIPVGAISGSYGVRGELRIKSYCAVPEDIENYSPLTSEDGSRRYALAL-- 64 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 + + ++ V ++ A+ L + D +QLP L + ++Y DL+G +V T G Sbjct: 65 VRPIKNGFVARITDVTSKEEADALRGTLLYADRAQLPSLPDDEFYHADLLGLEVYDTGGT 124 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +GKV + G++D+L + A +PF + VDL + I D G Sbjct: 125 LIGKVKTVQNHGADDLLE----TQLAGTSATVFLPFTKAA-VPTVDLASGRIIADPPDG 178 >UniRef50_B5J1W5 16S rRNA processing protein RimM n=2 Tax=Octadecabacter antarcticus RepID=B5J1W5_9RHOB Length = 183 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 7/176 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 D IV+G + S+G+ G +R+ S D E++ +Y P Q + ++ Sbjct: 1 MPMSDDRIVVGTIAGSFGVNGDVRLKSFCADPEALANYTPLTRADGSQIMTIVIKG--QT 58 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I ++ G+ ++ A+ L ++ QLP L + ++Y DL+G T G LG+ Sbjct: 59 KGSLIARVDGITTKEEADGLRGMDLYAQRDQLPSLPDDEFYHTDLVGLMTYDTGGAKLGR 118 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V + G++D+L I + LVPF + VDL + I VD G Sbjct: 119 VKAVQTNGADDLLEIISPS----DKDTVLVPFTKAN-VPTVDLASGRIVVDPPRGL 169 >UniRef50_B7RY72 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RY72_9GAMM Length = 183 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 106/179 (59%), Gaps = 7/179 (3%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 ++ +P+ GK+ YGI+GW+++ S T+ AE++F + W +Q+ G V+ + WK Sbjct: 1 MNESGSNPLTAGKITGCYGIKGWVKIHSFTDPAENLFRFGKWMLQRRGALVAVEFDHWKP 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV------TT 119 + M+ + GVDDRD A +IVV++ LP LEEG++YW+ L G Q Sbjct: 61 QGKGMVAHIAGVDDRDLAESYKGLQIVVEADSLPPLEEGEFYWRQLQGLQAWGREPDSGD 120 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 + LG V ++ETG+NDVLV+KA D+ KERL+P+L G + +VDL I++DW Sbjct: 121 DRVLLGTVDYLIETGANDVLVLKAT-GDSIDDKERLIPYLPGDTVSRVDLEEAVIDIDW 178 >UniRef50_C4L602 Ribosome maturation factor rimM n=4 Tax=Bacillales RepID=RIMM_EXISA Length = 172 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 97/174 (55%), Gaps = 9/174 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 +D + +GK+ +++G++G +++ ++T+ E F+ G Q++ + +++ H Q Sbjct: 1 MDWLYVGKIANTHGLKGEVKILAATDFPEERFKKGNTLFLDVDGTKQEMTITTYRPHKQF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ KG D+ + ++ V + + L+E ++Y+ +++GC+ V +G +G V D Sbjct: 61 HLVTFKGFDNINLIEKYKGLKLYVHAEHVHDLDEHEFYYHEIIGCEAV-VDGEVIGVVDD 119 Query: 130 MMET-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ET G+NDV VIK G + L+P+++ V++++D+ + + + PG Sbjct: 120 IFETNGANDVWVIKRP-----GKSDALIPYIES-VVQEIDVDAKRVVITPIPGM 167 >UniRef50_C4KAF6 16S rRNA processing protein RimM n=1 Tax=Thauera sp. MZ1T RepID=C4KAF6_THASP Length = 172 Score = 176 bits (447), Expect = 3e-43, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 8/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-----WQQVQLESWKHHN 67 IVLG++ + +G++GW+++ +D S + W++ W+Q L + + H Sbjct: 1 MIVLGRIVAPFGVQGWIKIHPFGDDPASWRNMSHWWLCSDDDAPAEAWKQYTLSACRPHG 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 + ++ L + DR AA + I LP+ EG+YYW DL+G V G +G V Sbjct: 61 KGLVAALAEISDRGAAEAIDGFYIAAPREALPKPAEGEYYWGDLVGLAVENEAGEAMGTV 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ TG++DVL + + ERL+PF+ + VDL TR I V W Sbjct: 121 AGLISTGAHDVL--QVREGEGEEGVERLIPFVAAY-VLDVDLATRRIRVAW 168 >UniRef50_Q49X25 Ribosome maturation factor rimM n=62 Tax=Staphylococcus RepID=RIMM_STAS1 Length = 168 Score = 176 bits (447), Expect = 3e-43, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 94/173 (54%), Gaps = 11/173 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQDM 70 + +GK+ +++GI+G ++V S+++ E+ F I +K + + + S++ H Sbjct: 2 KVEIGKIVNTHGIKGEIKVKSNSDFTETRFQPGELVIIERKNKEPLEFTIASYRMHKGLH 61 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSS-QLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ +G+++ + L I+ + + +L E ++Y+ D++GC V + +G+V + Sbjct: 62 MLTFEGINNINDIEYLKGETIMQERDHEEIELGEHEFYYSDIIGCTVFDDDDTPIGRVTE 121 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ETG+NDV V+K G KE L+P++ V+K +D+ R I++ G Sbjct: 122 IFETGANDVWVVK-------GDKEYLIPYI-ADVVKDIDVEGRRIQITPMEGL 166 >UniRef50_B9KXC6 16S rRNA processing protein RimM n=2 Tax=Thermomicrobia (class) RepID=B9KXC6_THERP Length = 184 Score = 175 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 89/180 (49%), Gaps = 10/180 (5%) Query: 2 SKQLTAQAPV--DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ 59 ++Q + P + + +G++ ++G+RG +++ T E I + ++ + + Sbjct: 7 NRQPPVERPASPERLSIGRIVGAHGVRGTVKLKIWTHFPERIPHLEYVYL--GEEPTPRR 64 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + ++L+G+ R+ A + + +D SQ L E +YY +++G QVV Sbjct: 65 LLRARVQGDLAFLQLEGITTRNEAEAMRGVVVRIDRSQAAPLGEDEYYQFEILGLQVVDE 124 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G LG+V++++ETG+NDV V++ E L+P + VI VDL + + V Sbjct: 125 AGNVLGRVIEILETGANDVYVVQRP-----DGSELLLPAIRS-VILAVDLEQQRLVVRPP 178 >UniRef50_UPI0001C3387B 16S rRNA processing protein RimM n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3387B Length = 195 Score = 175 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 96/190 (50%), Gaps = 10/190 (5%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQV 58 M Q + + +G + G++G L+V SST+ E + +I + Q V Sbjct: 1 MQNNYMQQNIDNMLKIGTIVGPRGLKGELKVLSSTDFPERFEISEEHWISDPNKSTLQSV 60 Query: 59 QLESWKHH--NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 +L S ++ I++L+G++ R+ A LL N ++ + + +P+L++ +Y+ L+ +V Sbjct: 61 KLISSRYVMEKNIYIVRLQGIETRNQAELLRNYKLFISNHSIPELKKDEYHISQLINLEV 120 Query: 117 VTTEGYDL-GKVVDMMETGSNDVLVIKANL---KDAFGIKERLVPFLDGQVIKKVDLTTR 172 + L G V D+ TG +D+L I+ ++ ++ LVPF+ +++ VDL R Sbjct: 121 YHQKTKKLIGIVTDVFTTG-HDLLEIELENPSLPESDKKQKFLVPFV-YEIVPIVDLVNR 178 Query: 173 SIEVDWDPGF 182 IE++ G Sbjct: 179 RIELNPPKGL 188 >UniRef50_A0YHP4 16S rRNA-processing protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHP4_9GAMM Length = 198 Score = 175 bits (445), Expect = 6e-43, Method: Composition-based stats. Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 23/193 (11%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-----WQQVQLESWKHH 66 + +V+GK+ + YG++GW++V S T+ E+I YQ +++ + WQ + + K+H Sbjct: 7 ELVVIGKITAVYGVKGWVKVHSFTDPMENILGYQSYYLSGGNKGTGESWQSLSFDEVKYH 66 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE------ 120 + ++ ++GV DR+ A +I + S++P+L+ D+YW+DL+G +V + Sbjct: 67 GKGLVALIEGVSDREVARGYCQRDIAIPISEMPELDTDDFYWRDLIGLKVFSVNIADEHD 126 Query: 121 -----------GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDL 169 G LG V MMETG+NDVL +K + +ERL+P+L QV+K VD+ Sbjct: 127 ADTEQIDPVGHGVLLGAVHQMMETGANDVLAVKQCDG-SIDDQERLIPWLPDQVVKHVDI 185 Query: 170 TTRSIEVDWDPGF 182 I+VDW F Sbjct: 186 EAGFIQVDWPVDF 198 >UniRef50_D2LE37 16S rRNA processing protein RimM n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LE37_RHOVA Length = 193 Score = 175 bits (444), Expect = 7e-43, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 9/171 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH-NQD 69 D ++LG++G ++G+RG +++ + T E I Y P + A + + + Sbjct: 3 EDKVLLGRIGGAHGLRGEVKIATFTAAPEDITAYGP--LSSADGTRTFVITGMRAASPGS 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEG-DYYWKDLMGCQVVTTEGYDLGKVV 128 +I +LKGV DR A L E+ V LP EE ++Y+ DL+G V+ EG +GKV+ Sbjct: 61 VIARLKGVADRTQAEALNGIELYVPRDSLPPPEEDDEFYYSDLIGLAAVSPEGAAVGKVI 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + G+ D++ ++ + L+PF D + VDL + V Sbjct: 121 GVHNFGAGDLIEVRFGDERQP----VLIPF-DNAHVPHVDLGAGRVTVIRP 166 >UniRef50_Q2JUD0 Ribosome maturation factor rimM n=2 Tax=Synechococcus RepID=RIMM_SYNJA Length = 186 Score = 175 bits (444), Expect = 8e-43, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 12/174 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQ---LE-SWKHHNQ 68 +++G++ +++G+RGWLRV ++ E + + P ++Q+ + + +E + Sbjct: 9 WLLVGQVVAAHGLRGWLRVKCWSDFPERLTEPGPRWLQRDSDPEPLLHPLIEGQFFPAKG 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++L+G+ DR AA +++V +SQ LE +Y++ DL+G V +G LG V Sbjct: 69 LYLVRLEGIPDRTAAEAWVGAKVLVPASQRLPLEPEEYHYSDLIGLAVYH-QGRLLGHVS 127 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G DVL I ++ L+PF+ ++ VDL ++V PG Sbjct: 128 AIWAAG-QDVLEIATP-----DKRQVLIPFVKA-LVPVVDLEKGELQVQPPPGL 174 >UniRef50_A1AXN8 Ribosome maturation factor rimM n=3 Tax=Bacteria RepID=RIMM_RUTMC Length = 189 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 8/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +++G++ S +G++GW+++FS T E+I YQPW I WQ +++ + + Sbjct: 26 DKRLLIGQINSLFGVQGWVKIFSHTHPRENILFYQPWHINVDANWQTLEIIQGCVQAKTI 85 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + ++K V D++ A ++ + SQLPQL+ G+YYW DL+G +V+ LGKV ++ Sbjct: 86 VAQIKDVFDKEQARAYIGIDLYIKKSQLPQLKSGEYYWDDLIGLEVINKAKIILGKVSNL 145 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TGSN+VLVI G +E VP++ +IK VD+ + I VDWD F Sbjct: 146 VDTGSNNVLVI-------NGEREHWVPYISPFLIK-VDIDNQIILVDWDENF 189 >UniRef50_Q7VQF9 Ribosome maturation factor rimM n=1 Tax=Candidatus Blochmannia floridanus RepID=RIMM_BLOFL Length = 185 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 115/180 (63%), Gaps = 2/180 (1%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M + P++PIV+G++ +YGI GW+++ S TE E IF Y PWFI +W+ ++L Sbjct: 1 MKVIVINSTPINPIVIGRIKGAYGILGWVKILSFTEKIEDIFVYNPWFIFFRSKWKVIKL 60 Query: 61 ESWKH-HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQL-EEGDYYWKDLMGCQVVT 118 E W+ +N++ I+K V DR+ A L+ +VV+S Q P+L + +YYWKD++GC+++T Sbjct: 61 EYWRLMNNKNYIVKFFNVSDRNHAMALSQHNLVVESIQFPKLYNKDEYYWKDIIGCKIMT 120 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G LG+V+ +++T ++D+LV+++ + L+PF+ ++IK VDL + VDW Sbjct: 121 INGKCLGRVISIIDTKAHDILVVRSEEYGFTKYVDCLIPFILKKIIKDVDLIKNIVVVDW 180 >UniRef50_A3DDH3 Ribosome maturation factor rimM n=7 Tax=Clostridia RepID=RIMM_CLOTH Length = 174 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA--GQWQQVQLESWKHHNQDM 70 + +GK+ +++GI+G ++ T++ + ++ K + + + S KHH + Sbjct: 4 YLQVGKIVNTHGIKGEVKAIPLTDNPRRFNKLKWAYVSKEISNEMPKFDIVSVKHHKNFV 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I+K G+DD +AA L +++D +L + ++ DL+G V TE LG + D+ Sbjct: 64 ILKFSGIDDMNAAEKLKEHFVIIDRKDAVKLPKDTFFICDLIGMNVFDTEEKKLGVLTDV 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TGSNDV V+K++ KE L+P L V+KKV + VD G Sbjct: 124 LSTGSNDVYVVKSDN-----NKEILIPALKS-VVKKVCFEDNKMVVDLPQGL 169 >UniRef50_C8UUQ0 16S rRNA processing protein n=6 Tax=Bacilli RepID=C8UUQ0_LACRG Length = 198 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 6/176 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + D +G + +++GIRG +RV +T+ E F + + S + H Sbjct: 24 GEKMPDYYDIGTIVNTHGIRGEVRVLVTTDFPEQRFKVGNKVYVATTPKTALTINSVRQH 83 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ K D + ++ V + L LEEG YY+KD++G V+ G LGK Sbjct: 84 KGLTMLTFKDYTDINQVLPFKGKKLQVTEAALKPLEEGSYYYKDIIGLTVIDEHGQTLGK 143 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V +++ G NDV VI G E L+PFL V++ +DL + V G Sbjct: 144 VSEILSPGPNDVWVIPRP-----GKSELLLPFLKS-VVQTIDLEQKEAHVIVPEGL 193 >UniRef50_Q39RN7 Ribosome maturation factor rimM n=3 Tax=Geobacter RepID=RIMM_GEOMG Length = 173 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQDM 70 D ++LGK+ +++GIRG L V + + +I Q ++ ++ +++ H + Sbjct: 6 DLVLLGKVVATHGIRGQLSVVPFSGEFSTILSMQTVYLSGPDNRKESFEVDRAAVHRNRV 65 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ LKG + + L E+ Q P L+EG++YW DL+G V T+EG LG++ ++ Sbjct: 66 LLTLKGFANINEVLHLVGRELFARRDQFPPLDEGEFYWCDLIGLSVTTSEGLSLGRIEEI 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TGSNDV V++ G +E L+P L+ V+ VDL + V G Sbjct: 126 IATGSNDVYVVRD------GEREYLIPALEDIVVG-VDLDKGIMTVSPTEGL 170 >UniRef50_C9LQK3 16S rRNA processing protein RimM n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQK3_9FIRM Length = 168 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 10/169 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 I +G++ + +G+RG LRV TE + F+ + + S + H I Sbjct: 8 KWITVGRIVAPHGVRGDLRVLPETERPAMFKKLKKLFLGG----RTYDVRSSRPHKNVYI 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 I L GV+DR+ A L + + ++LP+L EG+YY+ L+G VV+ G +G + +++ Sbjct: 64 IHLAGVEDRNGAEPLVGTPVEIPVAELPKLPEGEYYYFQLIGLTVVSDTGDTVGTLTEII 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ETG+N+V +K KE +P + + V +++ V Sbjct: 124 ETGANNVYAVKTAE-----GKEIYLPAI-PSCVLSVQPEEKTMTVHLPE 166 >UniRef50_Q5X7Z0 Ribosome maturation factor rimM n=6 Tax=Legionella RepID=RIMM_LEGPA Length = 169 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 7/176 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + +++G+ G +GI+G++ V S T+ A++I Y W + QWQ ++L + + Sbjct: 1 MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ +I +++G +R+ + LTN +I V SQL L G+YYW L+G V+ ++G GK Sbjct: 61 SKAIIAQIEGYPERELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGK 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VV++M TGSNDVLV++ G K L+P+L GQ + +D + + I VDWD F Sbjct: 121 VVEIMPTGSNDVLVVE-------GEKRHLIPYLPGQFVINIDESQQVITVDWDMNF 169 >UniRef50_B9YD25 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD25_9FIRM Length = 179 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 7/182 (3%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQL 60 +KQ ++P+ +++GK+ +++GIRG L+V T+ E F + Q+V + Sbjct: 3 TKQRKGESPMKKMIIGKIVNTFGIRGELKVVPDTDFVEERFAPGQTLTVCLPEGDQEVTI 62 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE 120 + K H +++ L+GV + + CE+ VD LP L EG+YY+ L G + + + Sbjct: 63 AAVKEHKGLLLVLLEGVTNINQVERYKGCELAVDQEALPPLAEGEYYFFQLKGLKAIDPQ 122 Query: 121 GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 G +LG VV M + + +++ +K K+ L+P++D +K+VDL ++I +D Sbjct: 123 GNELGTVVRMEASAAQNLIRLKKP-----DGKQALIPYID-VFVKQVDLQAKTITLDLIE 176 Query: 181 GF 182 G Sbjct: 177 GL 178 >UniRef50_Q18BB6 Ribosome maturation factor rimM n=6 Tax=Clostridium RepID=RIMM_CLOD6 Length = 171 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +G++ ++ G++G +RV+ T+D E + + +++ K ++ +E ++ +I+K+ Sbjct: 9 KVGQIVNTQGLKGEVRVYPLTDDIERFDELKDFYLGKDLN-NKLAVEKVRYKGSMVIMKI 67 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 KG+D + A L N + V +LEEG+++ D++G +V+T +G +G + D+++ Sbjct: 68 KGIDSIEKAEKLKNKFMYVSREDSRELEEGEFFIADMIGMEVLTVDGKYVGILEDVLQYS 127 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +NDV V+K KE ++P + + +D+ R + +D G Sbjct: 128 ANDVYVVKGEE-----DKEFMIPAIKK-FVPTIDIDERKMIIDPIKGM 169 >UniRef50_Q2RJV5 Ribosome maturation factor rimM n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RIMM_MOOTA Length = 176 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 12/177 (6%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ------KAGQWQQVQLESWKH 65 + I +GK+ ++GIRG ++VF T+ E ++ + G+ V + S + Sbjct: 4 ERIGVGKIIGTHGIRGEVKVFPLTDFPERFRPGTRLILEQEGADGREGRTFPVTVISVRP 63 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 ++I+KL ++D D A + + V+ ++ L EG YY L+G +V TT G LG Sbjct: 64 GKGNLILKLAEINDADQAGAVRGATLKVEPWEVEPLPEGHYYIYQLLGSRVYTTGGEFLG 123 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D++ TG+NDV V++ E L+P L V+++VDL + I V+ PG Sbjct: 124 ILRDILATGANDVYVVRNEDAG-----EILIPALK-TVVRQVDLARKEIRVELPPGL 174 >UniRef50_Q28UE7 Ribosome maturation factor rimM n=25 Tax=Rhodobacterales RepID=RIMM_JANSC Length = 187 Score = 173 bits (439), Expect = 3e-42, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D +G + S+G+RG +R+ S + I Y P + Q + L + Sbjct: 5 DHTCVGAISGSFGVRGEVRLKSFCAEPSDIGSYGPLSTEDGAQTYTITLT--RPVKAGYA 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 L GV ++ A+ L + S LP L + ++Y DL+G V+ T G +G V + Sbjct: 63 AMLSGVATKEDADALRGTRLYAPRSALPSLPDDEFYHADLVGLTVLDTGGEVIGTVASVA 122 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+ D+L + + L+PF V+ VD+ + VD G Sbjct: 123 NHGAGDILELSGPGLPSG----LLIPFTLA-VVPTVDIAAGRVIVDMPDGL 168 >UniRef50_Q1YSV4 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YSV4_9GAMM Length = 173 Score = 172 bits (438), Expect = 4e-42, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 108/175 (61%), Gaps = 5/175 (2%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + +V+G++ + +G+RGW++V + TE E++ YQPW I + +Q++ W+ H + + Sbjct: 1 MKTLVVGRITAVFGVRGWVKVHAYTEKVETLCSYQPWLIDTPAGVKPIQIDEWRRHGESL 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT---EGYDLGKV 127 + + G+DDRD A +I+V+ +LP+L+ DYYW L G VV+ E LG V Sbjct: 61 VAHIAGIDDRDIAQTWCGNDILVEKDKLPELKSDDYYWHQLEGLSVVSHYEGEQIRLGTV 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+NDVLVIK + ++ +ERL+P++D Q + + + R I+V WDP F Sbjct: 121 KSLLETGANDVLVIKGD-AESIDREERLIPYVD-QFVTSISMVDRRIDVIWDPAF 173 >UniRef50_A8PP11 16S rRNA processing protein RimM n=1 Tax=Rickettsiella grylli RepID=A8PP11_9COXI Length = 170 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 10/174 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQ 68 I++G +G YGI GW+++ S TE ++ DY+PW+++ G+ V ++ H Q Sbjct: 4 KKILVGSIGKPYGINGWVKINSYTEPFTNLIDYRPWYLEAPGKRSSPILVGVKKCCLHGQ 63 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ + ++A TN +I V+ Q L G+YYW DL G +V E LG + Sbjct: 64 QLLALFENSTTPESARFYTNYKIYVERDQFFPLHAGEYYWADLEGLKVYNRENIYLGIIQ 123 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TG+NDVLVI K LVPFL Q I+ +DL T+ + VDWD F Sbjct: 124 IIFATGANDVLVI-------SDKKRYLVPFLFNQTIQSIDLKTKIMIVDWDANF 170 >UniRef50_Q0AWV6 Ribosome maturation factor rimM n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RIMM_SYNWW Length = 172 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 6/174 (3%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ 68 + +GK+ +YG GWL+V T+ E + + + G+ ++ K HN Sbjct: 2 NSDKLVAIGKIAGTYGYAGWLKVIPLTDFPERFYKLDKVILNQGGKLGTFLVDGLKAHNN 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 + K G+D + A N + +D S+L L EG +Y L G V E LG++ Sbjct: 62 FYLFKFSGIDTVEVAQGFQNGILQIDESELYPLPEGYFYHFQLQGLSVYDEEKGLLGELT 121 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ETG+NDV V+ + E L+P + VI V L + +E+ PG Sbjct: 122 DIIETGANDVYVVDSPQYG-----EILIPAIK-DVILAVKLEEKRMEIKLLPGL 169 >UniRef50_B3PR17 Ribosome maturation factor rimM n=47 Tax=Rhizobiales RepID=RIMM_RHIE6 Length = 193 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 90/180 (50%), Gaps = 13/180 (7%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M + +T +P+++ +G + G+RG +R + T D ++ DY + ++ Sbjct: 1 MKEPMT--KLENPVLMATIGGAQGLRGEVRAKAYTADPTALGDYGHLHSMDG---RSFEI 55 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVT 118 + ++++ +G++DR+AA L E+ ++ LP +LE+ ++Y+ DL G + Sbjct: 56 LEIREMKNVVVVRFRGINDRNAAEALNGLELYIERDNLPDEELEDDEFYYADLEGLEARD 115 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G G V + + G+ D+L +K G + L+PF + + ++DL ++ +D Sbjct: 116 DQGVSYGTVTGVFDFGAGDLLELKGP-----GKRPVLIPFSEAS-VLEIDLEAGTLLIDP 169 >UniRef50_B2A2N9 Ribosome maturation factor rimM n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RIMM_NATTJ Length = 179 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 8/179 (4%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI---QKAGQWQQVQLESW 63 +D + +GK+ ++G++G L+V S T+ + ++ Q +ES Sbjct: 1 MHPELDLVYVGKIVGTHGVKGELKVISLTDIENRFNELDRVYLVNEQDHYDPIIAHIESS 60 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 H I+K DD + + I + + PQLEE +YY+ + G VVT E Sbjct: 61 FTHKNMEIVKFSEWDDINQVEGFHDWYIKIPREERPQLEEDEYYFDQITGLSVVTVEDEF 120 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V ++ +TGSNDV + K L+P L +V+KK+DL + + VD G Sbjct: 121 LGTVTNIYQTGSNDVYEVSKEQ----DDKPILIPAL-YEVVKKIDLDEQIMIVDLPEGL 174 >UniRef50_A9IK36 Ribosome maturation factor rimM n=5 Tax=Bordetella RepID=RIMM_BORPD Length = 206 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 26/207 (12%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--------- 51 M A P D + LG++ +YG++GW++V + A+ + W++ + Sbjct: 1 MPDAAHAAVPGDLVELGRINGAYGVKGWVKVQPHSAQADVLRKASSWWLTRLVPEKARGV 60 Query: 52 -AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKD 110 A Q+ ++ + ++ +L G+ DRD A L + V SQ P + +YYW D Sbjct: 61 VASAPQEYKVVQARPQGASVVAQLAGITDRDQAEALRGLAVQVSRSQFPAAADDEYYWVD 120 Query: 111 LMGCQVVTT-EGYD--LGKVVDMMETGSNDVLVIKANLKDAFGIK------------ERL 155 L+GC T EG +G V ++ + G++ +L + A G + E L Sbjct: 121 LIGCAFYTNAEGEPARVGVVEEVFDNGAHAILRVVLQRAPAPGGEPEPRRDAKGRPLEML 180 Query: 156 VPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VPF+ G I VDL+ R I+ +W Sbjct: 181 VPFV-GAHILAVDLSARRIDSNWPTEL 206 >UniRef50_C6BVQ3 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVQ3_DESAD Length = 185 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 7/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQD 69 ++ +V+ ++ +G+RG + + S + + ++ K GQ ++ + S + H Sbjct: 1 MEMLVVAEVVKPHGLRGEVCIESHADSPFLFDEVPCLYLAKKGQKPRRFVVRSSRKHKGR 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ KGV+DRD A L EI+V + LP+ + + Y +L G V +G +G + + Sbjct: 61 VLLTFKGVEDRDQAENLRGMEILVREADLPESGDDEVYMYELEGMSVELEDGTVVGTISN 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + VI + KE L P ++ + + VDL + V+ G Sbjct: 121 FILAPGQETWVI-----SSAEGKEILFPAVE-EFVLSVDLDAEKVVVEPPEGL 167 >UniRef50_Q2YBJ3 Ribosome maturation factor rimM n=3 Tax=Nitrosomonadaceae RepID=RIMM_NITMU Length = 168 Score = 171 bits (435), Expect = 8e-42, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 97/170 (57%), Gaps = 10/170 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMI 71 +++G++ Y + GW++VF TE + + DY W++ + G+W + ++ + H ++ Sbjct: 1 MVIMGRVAGPYAVAGWIKVFPYTEYVDGLLDYPDWWLGSEGGKWHKFKVIEGEVHGSVLL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GD--YYWKDLMGCQVVTTEGYDLGKVV 128 L+ DRDAA L +I + LP L E G+ YYW DL+G V+ +G LGKV Sbjct: 61 ASLEQCADRDAAARLKGLKIAIPRRLLPALPESGEEGYYWSDLIGLAVINLQGEVLGKVA 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ETG+NDVL ++ + ERL+PF+D +IK VDL I VDW Sbjct: 121 GLLETGANDVLQVQNPEET-----ERLIPFIDQVIIK-VDLAAGRITVDW 164 >UniRef50_A8ZV21 16S rRNA processing protein RimM n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZV21_DESOH Length = 170 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 7/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQDM 70 + + +GK+ +GIRG +RV+S + D F++ G + +E K H + Sbjct: 5 EFLCVGKIVGIHGIRGTVRVYSHSGDIAEFSQGNTLFLRGPKGDERVCTIEWCKPHGRHF 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ +D R+ A + E+ + LP LE+ YYW DL+G V + LG++ + Sbjct: 65 LLGALELDSREQAAAVVGYELFALRASLPPLEDDTYYWDDLIGLAVFDKK-TLLGRITSI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + T NDV V+ DA KE LVP L V+ +DL +++V Sbjct: 124 IPTPGNDVYVV----TDADTGKETLVPALKS-VVGHIDLAAGTMQVSLPESL 170 >UniRef50_A6GU91 16S rRNA-processing protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GU91_9BURK Length = 188 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 24/194 (12%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--------------- 51 P D + LG++G YG++GW+ V S+E+ + + + W++ + Sbjct: 1 MNVPDDLVELGRIGEPYGLKGWINVLPSSEEPDVLLKSKQWWVSRLPSSEGAVVRRAAQP 60 Query: 52 ---AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYW 108 ++ ++ K H+ ++ L+G++ + A + V ++ P EG+YYW Sbjct: 61 KFEDLVFEPFRVLQSKPHSSRIVAHLEGIEQPELAAQFKGRRVYVSRARFPAPAEGEYYW 120 Query: 109 KDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVD 168 DL+GC+V EG LG V +++ G++ +L +K++ + +E L+PF+ V+ VD Sbjct: 121 VDLVGCRVTNLEGRVLGTVTQVVDHGAHPILSVKSDAE-----QEMLIPFVAAYVV-NVD 174 Query: 169 LTTRSIEVDWDPGF 182 + I+ DW + Sbjct: 175 TQAKQIQADWQEDY 188 >UniRef50_B4RCD0 16S rRNA processing protein RimM n=3 Tax=Caulobacteraceae RepID=B4RCD0_PHEZH Length = 167 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I++G++ ++G+RG +R+ S T + ++ DY+ +++ + L S + + Sbjct: 3 DSLILVGRVAGAFGVRGEVRLTSYTAEPSALLDYRD--LKREDGRPALTLLSGRPAKGGL 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +++ + V+ R+ A L + + LP+ EE ++Y DL+G V T +G LG+V ++ Sbjct: 61 VVRAQEVETREQAEALRGLNLYIPRDILPEPEEDEFYVTDLIGLAVETPQGEPLGRVKNV 120 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+ D+L I+ A +PF + + +V L + Sbjct: 121 QDFGAGDLLEIEPPEGAA-----WYLPFTK-EAVPEVRLAEGKVVAVRPE 164 >UniRef50_P59425 Ribosome maturation factor rimM n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RIMM_BUCBP Length = 180 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 103/164 (62%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + K G+++GI GW+RVFS TE E+IFDY PWFI+K + ++ + WK + ++K Sbjct: 10 LTIAKFGAAHGILGWIRVFSYTEKKENIFDYVPWFIKKEQKIIKILPKYWKILKKTFLVK 69 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + V++R A LTN +I+++ LP+L +YYWKD++ C V T LG+V +++ T Sbjct: 70 INDVNNRSMAQKLTNYDILINQKTLPKLNNNEYYWKDIVDCTVFDTNFIKLGRVSELIRT 129 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 SND+LV+KA+ + L+PFL Q+I +V++ + I + Sbjct: 130 PSNDILVVKASNIKNISQNDMLIPFLHPQIISEVNINNKKIVIK 173 >UniRef50_C8PXB2 16S rRNA processing protein RimM n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXB2_9GAMM Length = 185 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 109/183 (59%), Gaps = 7/183 (3%) Query: 1 MSKQLT----AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ 56 M+KQ T +A +G++ YGI GWL VFS TED E+IFD QPW I A + Sbjct: 1 MAKQPTDLHTNEANASLFKIGELKKPYGIHGWLWVFSFTEDREAIFDMQPWVINTAMGQK 60 Query: 57 QVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 + +++W+ + +++L V DR+ A + + + + + L +L E +YYW DL+G V Sbjct: 61 TLTVKNWRQQGKGYVVQLNEVPDRNIAETMFSVSLWAEKNNLSELAENEYYWSDLIGLTV 120 Query: 117 VTT-EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 ++ E LG+V ++ ETG++ ++V++ D+ +ERL+P+ Q + +V+LT +++ Sbjct: 121 ISQSENVILGRVKELFETGAHAIMVVE-PTADSVDGEERLIPW-HKQTVGEVNLTEQTLM 178 Query: 176 VDW 178 VDW Sbjct: 179 VDW 181 >UniRef50_B8DRI5 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRI5_DESVM Length = 210 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 10/176 (5%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHN 67 + I +G +G +G+RG + V E + + +++ G + + + + H Sbjct: 2 SDDSFIEIGLVGRPHGLRGEVGVDFWAESPDLLR--GTLWLRPGRGAPRPHTVAAVRRHQ 59 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGK 126 ++ +G+ DR AA L ++V +LP+ E + Y +L+G +V+ + G LG Sbjct: 60 GRPLVLFEGIADRSAAETLRGMHVLVPKDRLPEPAEDEVYLHELLGLRVLLHDTGAALGT 119 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+ G +V I+ KE L+P ++ + + +DL R + + PG Sbjct: 120 LDDVQMPGGQEVWSIRT-----ADGKEVLLPAVE-EFVASIDLDAREVRITPPPGL 169 >UniRef50_B6BW84 16S rRNA processing protein RimM n=1 Tax=beta proteobacterium KB13 RepID=B6BW84_9PROT Length = 165 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 68/174 (39%), Positives = 109/174 (62%), Gaps = 10/174 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQ 68 + +++GK+ S+YGI+GW+++ TE A++ Y+ F+ + + W +V+++ K Q Sbjct: 1 MENLVIIGKIISAYGIKGWVKIRPFTETAKNFIQYKTQFLSRNQKDWNRVEIKEIKIQGQ 60 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 D+I + G+ DRD + + + QLPQL E ++YW DL+G +V+ + DLGKVV Sbjct: 61 DVIADI-GLTDRDQSISHKGYFLAIARDQLPQLPEDEFYWDDLIGLKVIDVDREDLGKVV 119 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+NDVLV+ G +ERL+P++ QVIKKVD + IEVDWD F Sbjct: 120 GLIETGANDVLVV-------SGDRERLIPYI-PQVIKKVDTHNQLIEVDWDKEF 165 >UniRef50_B1XKY8 Ribosome maturation factor rimM n=1 Tax=Synechococcus sp. PCC 7002 RepID=RIMM_SYNP2 Length = 175 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 11/178 (6%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWK--H 65 A D I++G++ ++ G++G +R+ ST+ E ++Q Q Q V+LE + Sbjct: 2 AEQDWIIIGQVVAAQGLKGEVRINPSTDFPERFEVPGQRWLQLPNQDPQSVELERGRQIP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY-DL 124 ++K + + DR A + +++V + P+LE +Y+ DL+G +V L Sbjct: 62 GKNLFVVKFEHIQDRTQAENIRGAKVLVRAGDRPELEADEYHVSDLIGLEVFDYNTQAKL 121 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V D+ T + DVL + K+ LVPF+ ++ VDL +EVD PG Sbjct: 122 GIVSDLY-TAAQDVLEVTDAN-----QKKHLVPFVKA-IVPVVDLVENRLEVDAPPGL 172 >UniRef50_A8RBV5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBV5_9FIRM Length = 166 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTED-AESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 ++ I +G + +++G+RG ++V +++ E +I G +++ + + + H Sbjct: 1 MEKIKIGILTNTHGLRGEVKVKITSDFWEERFAKNAVLYIDVDGHTKELCVVNARLHKGM 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K K DD + + + QL +L E + Y+ ++M +V +G ++G VV+ Sbjct: 61 LIVKFKDYDDINQVEHWKGNALYIFKEQLHELNEDEAYYHEMMNARVQDIDGNEIGTVVE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ETG+N VL ++ +E L+PF+ + D + ++V G Sbjct: 121 LIETGANLVLRVRGE------KREFLIPFVKA-FVTMFDKEKKIMQVTMMEGL 166 >UniRef50_Q0AKL5 Ribosome maturation factor rimM n=2 Tax=Hyphomonadaceae RepID=RIMM_MARMM Length = 185 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 6/174 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 + D + + + ++G+RG +V S + F Y + + ++ + Sbjct: 3 EPADDLVFIAAIAGAHGVRGECKVKSFAGNPADAFKYGAFLDIDGKTI--LTPKAARPVK 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++ DRD A L ++ V S LP+LEE ++Y DL+G +V +G +G + Sbjct: 61 DGFVVRFAEPLDRDKAQALKGTKLHVLRSALPELEEDEFYHSDLLGLKVQGLDGAPMGTL 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 + GS D+L I ++PF + + V + I +D Sbjct: 121 KAVHNFGSGDLLEITGTPDRNGS---WMLPFTR-EFVPHVSIAEGVITIDPPED 170 >UniRef50_C4GAZ1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAZ1_9FIRM Length = 172 Score = 169 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY--QPWFIQKAGQWQQVQLESWKHHN 67 D +G + S++G++G ++V+ +TE++ D Q + + G +++ + S ++ Sbjct: 1 MQDYFQVGVITSTHGLKGEVKVYPTTEESRRFDDLCGQKVYAGRDGSLEELTIVSVRYFK 60 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 + +I++ ++ D + L +++ Q LEEG+YY DL+G +VV +G +LG + Sbjct: 61 KQVILRFAEKNNIDEVSSLRQARLLISREQALPLEEGEYYVADLLGLKVVADDGRELGIL 120 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ TG+NDV VI G + ++P + Q + K DL I V PG Sbjct: 121 TDVLTTGANDVYVI-----GRQGQSDLMIPAIR-QCVLKTDLEAGEILVHLLPGL 169 >UniRef50_B9JCM0 Ribosome maturation factor rimM n=5 Tax=Rhizobiales RepID=RIMM_AGRRK Length = 190 Score = 169 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 87/175 (49%), Gaps = 11/175 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 +P+++ +G++ G+RG +R + T D ++ DY + ++ + Sbjct: 1 MTKLENPVLMATIGAAQGLRGEVRARAFTSDPTALGDYGHLHSMDG---RIFEVLEIREA 57 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLP--QLEEGDYYWKDLMGCQVVTTEGYDL 124 +I++ +GV++RDAA L E+ ++ LP +LE+ ++++ DL G + V +G Sbjct: 58 KNVVIVRFRGVNNRDAAEALNGLELYIERDNLPDDELEDDEFFYTDLEGLEAVDDKGTAY 117 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G V + + G+ D+L +K G + L+PF + + ++DL I +D Sbjct: 118 GTVSGVYDFGAGDLLELKGP-----GKRPVLIPFSEAA-VLEIDLEGGKILIDPM 166 >UniRef50_A0LMM1 Ribosome maturation factor rimM n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=RIMM_SYNFM Length = 176 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQ 59 MSK + P + +GK+ ++GIRG L++F E + + +F++ K G + + Sbjct: 1 MSKTVE---PACLVPVGKVTRTHGIRGALKIFPYGESLAAQAAGERFFLRSKNGGYCTLT 57 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 L + + ++ + + D + A EI + +LP + EG+YY L+G +VT Sbjct: 58 LIGLRAQGRMLVCGFEEIKDVNGAQPFVGEEIFLPEDRLPPVSEGEYYHYRLIGLDIVTL 117 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +G LG + ++ETG NDV V + +E L+P ++ VI+++DL + + VD Sbjct: 118 DGESLGVLRKIIETGGNDVYVAERE------GREILIPAIE-DVIREIDLERKRMVVDLP 170 Query: 180 PGF 182 G Sbjct: 171 EGL 173 >UniRef50_D1BLK6 16S rRNA processing protein RimM n=4 Tax=Veillonellaceae RepID=D1BLK6_VEIPT Length = 165 Score = 168 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 D I +G + + +G+RG LR+ T+ E +I ++ + S + H Q ++ Sbjct: 5 DFITIGVIIAPHGVRGDLRIMPQTDFPERFMHMDACYIDG----KEYHVASARFHKQFVL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 K + +R+ A L T I V L +L EG YY D++G +V T G LG V D++ Sbjct: 61 ASFKEIPNRNTAELFTKKAIQVRREDLVELPEGRYYIFDIIGLEVQDTMGNVLGTVTDVL 120 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + G+NDV V+ + G ++L ++ +V+K +++ + + VD Sbjct: 121 QPGANDVYVVSKD-----GEPDQLFAAIE-EVVKDINVKNKLMIVDPPE 163 >UniRef50_A8YVT3 Ribosome maturation factor rimM n=16 Tax=Lactobacillus RepID=RIMM_LACH4 Length = 171 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 7/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 ++ + ++ +++G+ G ++V T+ E F ++ + + +E + Q Sbjct: 1 MEYFDVARILTTHGLNGEVKVNVITDFPEERFAEGMHLSLRSDTNRTLTVEKSRPFKQFW 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVD 129 +I+ K + D D A L +VV +L +G YY+KD+ C V+ E G +GK+VD Sbjct: 61 LIQFKEITDIDQAEKLRGQILVVSEEDRGELPDGVYYYKDIFDCDVIDEETGKRIGKIVD 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+ND+ +++ + KE +P + V+KKVD+ + + V+ G Sbjct: 121 IQSPGANDIWLVRED-----DGKEYWIPNI-ADVVKKVDVAAKKVYVELMEGL 167 >UniRef50_A4FME9 Ribosome maturation factor rimM n=5 Tax=Actinomycetales RepID=RIMM_SACEN Length = 180 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 10/173 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF---IQKAGQWQQVQLESWKHHNQDM 70 + +G++ +G+RG L V T+ E F + A + + + + H + Sbjct: 9 LAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRRRGAHASENFTVAAARPHAGRL 68 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ +GV+ R+AA L + V + +L ++ +++ L G +VV G + G V + Sbjct: 69 LVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAGVVAE 128 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T + ++L ++ +E LVPF+ +++ ++DL I VD G Sbjct: 129 VVHTPAGELLAVRTP-----DDREVLVPFV-SEMVPEIDLEAGRIVVDPPEGL 175 >UniRef50_A0LV71 Ribosome maturation factor rimM n=1 Tax=Acidothermus cellulolyticus 11B RepID=RIMM_ACIC1 Length = 176 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%) Query: 9 APVD---PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKH 65 +P + + +G++ ++G+ G + V T+D + F G + ++ + Sbjct: 4 SPEETTVRVAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGAVLTTDTG--VTLTVQRTRW 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDL 124 H+ ++++ G+DDR A L + + + + E+ +YY L+G +V T G ++ Sbjct: 62 HSGRLLVRFAGIDDRTTAEDLRGRVLFAEVDERVRPEDPEEYYDYQLIGMRVETVTGQEI 121 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G V +++ DVL I+ + + VPF+ ++ +VD+ R + +D PG Sbjct: 122 GVVREVLHLPGQDVLAIERSA-----DGDAFVPFV-AALVPEVDVDQRRLRIDPPPGL 173 >UniRef50_B0T563 Ribosome maturation factor rimM n=5 Tax=Caulobacteraceae RepID=RIMM_CAUSK Length = 192 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +T +P + I++G++ ++G+RG LR+ + TED ++ ++ Q + +++ + Sbjct: 1 MTQSSPQNLILVGRVAGAFGVRGELRIATYTEDPLTLTRFKALTRQDGSP--ALTVQTAR 58 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYD 123 ++ + GVD ++AA+ L + V + LP+ +E +YY DL+G V Sbjct: 59 VVKDGVVARCAGVDTKEAADALRGLRLYVPRAALPEPDEDEYYLADLIGLPVRHVATDEL 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LGK+ + G++D+L I A G + +PF + +V + + D Sbjct: 119 LGKIKSVQNFGADDLLEIDP----ALGGQTWYLPFTRAA-VPEVKIADGVVLADPP 169 >UniRef50_C6MFS4 16S rRNA processing protein RimM n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFS4_9PROT Length = 170 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 8/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-QWQQVQLESWKHHNQDMI 71 IV+G + YG+ GW+++ TE + + +Y W++ +W +V + + + ++ Sbjct: 1 MIVMGHIIGPYGVHGWIKINPYTEHLDGLMEYPQWWLGDEKAEWNKVHVVNGHIYGTTLL 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE---GDYYWKDLMGCQVVTTEGYDLGKVV 128 +KLK DR A L +I + LP L E YYW DL+ +V+ +G LG VV Sbjct: 61 VKLKEYSDRTQATKLKGIQIAIPRDWLPDLPENGVDGYYWTDLINAKVLNLKGEKLGTVV 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 + ETG+NDVL I ++ KE L+P + Q + KVDL I VDWD Sbjct: 121 GLFETGANDVLRIVKMDQE---KKEILIPCI-SQYVMKVDLKNAQIIVDWD 167 >UniRef50_B8KXD1 16S rRNA processing protein RimM n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KXD1_9GAMM Length = 183 Score = 167 bits (425), Expect = 1e-40, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-------GQWQQVQLES 62 +D + + + YGI+GW+++ ED +++ + I G + V ++S Sbjct: 1 MLDRLTVASIAGVYGIKGWVKLRLFVEDPDTLAQLEQLEISPPAKEPGGQGTSRPVVIDS 60 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG- 121 + + + + G+DDRD+A L EI V LP +G+YYW L G V EG Sbjct: 61 VRKQGRGTVAHIVGIDDRDSAEALRRYEITVPREGLPDPADGEYYWHQLQGLAVWCREGS 120 Query: 122 ---YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G+V ++ETG+NDVLV+ + ERL+P L +V+K+VDL R I VDW Sbjct: 121 GDAVCVGRVAYLLETGANDVLVVAPTAG-SIDDSERLIPLLFDEVVKEVDLERREIWVDW 179 >UniRef50_P74035 Ribosome maturation factor rimM n=1 Tax=Synechocystis sp. PCC 6803 RepID=RIMM_SYNY3 Length = 185 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 11/188 (5%) Query: 1 MSKQLT-AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQ 57 M++ +T Q + + +G + ++ GI+G +RV S+++ +I+K Q Q Sbjct: 1 MAEPMTEQQKTENWLEIGTIVAAQGIQGEVRVLSASDFPARFLTKGQRWIRKTPQETPQP 60 Query: 58 VQLESWK--HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQ 115 + L+ K I++ + DR+ A L N +++V ++ LE G+++ DL+G Sbjct: 61 LTLKKGKQIPGKNLYILRFTEITDRNQAEALVNYQLLVPATDRLPLEPGEFHVTDLLGLI 120 Query: 116 VVTTE-GYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 V + G LG V D G ND+L I + KE LVPF++ ++ V+L + + Sbjct: 121 VYDHDNGDRLGIVTDFYSAG-NDLLGITLDKNP---DKEVLVPFVEA-IVPTVELAEQRL 175 Query: 175 EVDWDPGF 182 E+ PG Sbjct: 176 EIKTIPGL 183 >UniRef50_A5IM15 Ribosome maturation factor rimM n=6 Tax=Thermotogaceae RepID=RIMM_THEP1 Length = 176 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 92/171 (53%), Gaps = 9/171 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQD 69 + + +GK+ +++G++G ++ F T E + + + + + + +ES + N+ Sbjct: 11 ERVAIGKIVNTHGLKGEVKFFPYTNSEEIVKNLSSVVLYNSEKKAFYNLTVESVRRMNKL 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+ K +D +AA + CE+ + +LP+L E +YY+ +++ C V G ++GKVVD Sbjct: 71 FLIRFKSIDTIEAAERIKGCEVFIKYEELPKLSEDEYYFYEILDCDVFYESGENVGKVVD 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++ETGSNDVLV++ KE L+P ++ ++D + I Sbjct: 131 IIETGSNDVLVVRK------KKKETLIPMTKDCIV-EIDKGAKKIIAKEME 174 >UniRef50_B2GD26 Ribosome maturation factor rimM n=4 Tax=Lactobacillus RepID=RIMM_LACF3 Length = 169 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP--WFIQKAGQWQQVQLESWKHHNQ 68 ++ +GK+ +++GIRG ++V ++T+ + F + ++K ++ +E + H Sbjct: 1 MELYTVGKIVNTHGIRGEVKVVATTDFVDQRFADGATLYLVKKDQAPVELTVEHARMHKG 60 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +++K K ++ + + E+ V +LEEG YY+ ++G T +G LGK+ Sbjct: 61 LVLVKFKQFNNINEVQHFRDAELKVADQDQAELEEGQYYYHQIIGLTAETVDGRVLGKIK 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ G+NDV V+ K + L+P +D V+K+VDL + V+ G Sbjct: 121 EILAPGANDVWVVDRKQKT-----DLLLPVID-DVVKEVDLAGGKVIVELLEGL 168 >UniRef50_C8P0C6 16S rRNA processing protein RimM n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0C6_ERYRH Length = 181 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ-PWFIQKAGQWQQVQLESWKHHNQD 69 ++ I++G + +GI+G L+V T+ E F + G+ +ES++ H+ Sbjct: 17 MEHIIIGIIQKPFGIKGELKVAPKTDFVEDRFAPGQRVHFKLGGKTTDYVIESYRRHHGS 76 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++IK +G++ + EI +D +L E YY+ DL GC V + EG +LG V + Sbjct: 77 ILIKFEGLNSLNDVEFFHKGEISIDRESQHELPEDQYYFIDLEGCTVFS-EGVELGVVSE 135 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +MET ++ VL IKA ++ LVPF++ I+ VD ++ I+++W G Sbjct: 136 IMETPAHPVLRIKAEE------RDILVPFVER-FIQDVDTKSKRIDINWMEGL 181 >UniRef50_D1Y0X8 16S rRNA processing protein RimM n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y0X8_9BACT Length = 175 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 82/173 (47%), Gaps = 9/173 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPW-FIQKAGQWQQVQLESWKHH--NQD 69 +V+G++ ++G+RG +++ T+ E F+ + F + ++ + Sbjct: 6 RVVVGQVQGTHGLRGEIKIRPLTDFPERFFEMESLSFYRDGKHAGSYRVTGMRDALTRGC 65 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + L+GV+ + A LL C + + + L G+++ DL+G + G LG V D Sbjct: 66 FLAALEGVETIEQAELLRGCSVEIAPDERVPLAPGEFWISDLIGLEACDDRGSKLGVVKD 125 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++++G++ ++V++ + G K+ L+P + + DL R + + G Sbjct: 126 IVDSGASQLVVVRDD-----GGKDHLIPAA-PEFLLGADLEARRVTLRLIEGL 172 >UniRef50_A7HT07 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_PARL1 Length = 188 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 9/183 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL 60 M+ + LG + ++G+RG +RV TE E + Y P + + L Sbjct: 1 MAPTPDRDGQDKKVCLGVVTGAHGVRGLVRVKPYTEMPEGVAAYGPVETKDGATSFAISL 60 Query: 61 ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD--YYWKDLMGCQVVT 118 + +I KL+GVDDRD A L E+ V +LP+ + +Y+ DL+G + V Sbjct: 61 KGM--AKDLVICKLEGVDDRDVAAALRGTELYVPRERLPRASGDEEGWYYADLIGLRAVG 118 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +G D G++ + G+ D+L I A G + L+ F D + + +VD+ + +D Sbjct: 119 LDGRDYGRIAGVENFGAGDLLEI----APAEGGQTVLMGFTD-ENVPEVDIAGGRVVIDP 173 Query: 179 DPG 181 G Sbjct: 174 PAG 176 >UniRef50_D0MHG4 16S rRNA processing protein RimM n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHG4_RHOM4 Length = 179 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 89/183 (48%), Gaps = 11/183 (6%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESW 63 + P + +++G + ++G+RG +V T+D + ++ + + V+LE Sbjct: 1 MERVDPDELLLMGYVARAHGVRGAFKVVPETDDPTRFETLETIYVGRSPETARPVRLERV 60 Query: 64 KHHNQD----MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 ++ +++++ V DRDAA L + S LP L EG+++ DL+G +V T Sbjct: 61 QYQPTRRGLIVLLQVAEVTDRDAAQALRGLRVYARRSDLPPLAEGEFFLHDLIGLRVETE 120 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G +G V++++E ++ + V+ G +VP ++ ++++DL R + + Sbjct: 121 AGETVGTVIEVLEMPAHLIYVVGRP-----GRPHAMVPDVE-VFVRELDLEGRRLVIRPI 174 Query: 180 PGF 182 G Sbjct: 175 EGL 177 >UniRef50_C5YVW0 Putative uncharacterized protein Sb09g028680 n=2 Tax=Andropogoneae RepID=C5YVW0_SORBI Length = 663 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 86/193 (44%), Gaps = 22/193 (11%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQ----KAGQWQQVQLESWKH 65 + + +G + ++G+RG + V T+ E + +++ Q ++ +L + Sbjct: 94 EELVEVGYVSGAHGVRGDVLVTPRTDFPELRLATPGTRWLRARAAGKQQVREFELVRGRA 153 Query: 66 HNQD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GY 122 H I+ G+D+ D A + ++V + P++E+ ++Y DL+G +V+ + G Sbjct: 154 HTGKKSWIVSFDGIDNLDEARQIVGSAVLVKAGDRPEIEDDEFYSLDLVGMRVIVKDTGK 213 Query: 123 DLGKVVDMMETGSNDVLVI------------KANLKDAFGIKE-RLVPFLDGQVIKKVDL 169 +G V + G D+L + + +D+ +E +PF + ++ VD+ Sbjct: 214 VVGTVGQIFNFGGGDLLQVMIGSAEGTAVDPDSENQDSISSREHVWIPFAE-DIVPDVDM 272 Query: 170 TTRSIEVDWDPGF 182 +R + + G Sbjct: 273 ASREMWITPPKGL 285 >UniRef50_C7MY86 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C7MY86_SACVD Length = 174 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 86/172 (50%), Gaps = 6/172 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--AGQWQQVQLESWKHHNQDMI 71 +V+G++ +GIRG + V T+ E F + K G+ + + + + + H ++ Sbjct: 3 VVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKMRDGRTRPLTVAAVRPHGGRLL 62 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ V DR AA + +++D +LP +++ ++Y +L G + +G +G V ++ Sbjct: 63 VRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGTVREV 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + ++L ++ + +E LVPF+ ++ +V++ I +D G Sbjct: 123 VHSPGGELLAVEVEE--SGRRREVLVPFV-AAIVPRVEVDRGRIVLDPPEGL 171 >UniRef50_B6FZ73 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ73_9CLOT Length = 172 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKL 74 +GK+ + G++G +RV+ +T+D + +++ K + ++E ++ +I+K+ Sbjct: 9 KVGKIVKTQGLKGDVRVYPTTDDIYRFDYLEEFYVGKDRE-NPWEVEDVRYKGNLVIMKI 67 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 KG+D + A L +I V + +LEEG+++ D++G V T G +G + ++++ Sbjct: 68 KGIDRVEEAEKLVGKDIYVSRDESFELEEGEFFIADMIGMDVYTVSGEKVGVLKEVLQYS 127 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +NDV VIK KE L+P + + ++D+ + +D G Sbjct: 128 ANDVYVIKNEE-----GKEYLIPAVMK-FVPEIDIEEDKMIIDPIKGM 169 >UniRef50_UPI0000E87E31 16S rRNA processing protein RimM n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E31 Length = 167 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHNQD 69 D +++GK+ +GI+GWL+V TE+ ++ +Y W I K W ++E+ ++ Sbjct: 3 DDVVIMGKIVGPHGIKGWLKVHPFTEEIGTLSNYPQWLISKDEKHWVGHKVETATVKDKT 62 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++KL G+DDR+ ++ + + + +LP+L+ YYW DL+G V GY G + Sbjct: 63 LLVKLVGIDDRNGSDSVNKNMVGILKEELPKLDADTYYWSDLIGLDVQNEAGYYFGSIQT 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 MMETGSNDV+VIK G +E L+P+L +IK VDL + + VDWD + Sbjct: 123 MMETGSNDVMVIK-------GEREFLIPYLPDVIIK-VDLEAKKVLVDWDENY 167 >UniRef50_B8DDW0 Ribosome maturation factor rimM n=23 Tax=Bacillales RepID=RIMM_LISMH Length = 172 Score = 165 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 95/176 (53%), Gaps = 9/176 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ---PWFIQKAGQWQQVQLESWKHH 66 +GK+ +++G+ G +RV ++T+ E F F + + + +++ + S + H Sbjct: 1 MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEKNSKKPEKLIIRSHRKH 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 ++ +G + + + +QL LEE ++Y+ +++GC VVTT+G +LG+ Sbjct: 61 KNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYFHEIIGCTVVTTDGEELGE 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ G+NDV V+K + KE+L+P++ V+K++++ + I ++ G Sbjct: 121 ITEILTPGANDVWVVKGS-----DKKEKLIPYI-ADVVKEININDKKITIEVMEGL 170 >UniRef50_P57475 Ribosome maturation factor rimM n=5 Tax=Buchnera aphidicola RepID=RIMM_BUCAI Length = 176 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 110/176 (62%), Gaps = 2/176 (1%) Query: 4 QLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESW 63 ++ P+ P+++GK+G SYGI GW+ +FS TE+ E IF+Y PWF K W ++Q+++W Sbjct: 3 NISINKPIQPLLIGKVGKSYGILGWINIFSFTEEQEKIFNYLPWFFFKEKNWTRIQIKNW 62 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 K + + I+ +K + DR + TN +I++ LP L++ DYYW D++ +V + + Sbjct: 63 KKYKNNFIVHIKDISDRSVVSQFTNADIIISKHTLPALKKNDYYWNDIINYKVFNIDQHY 122 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 LG V++++ T +ND+L++K K K L+PF+D ++IK V+ + I V WD Sbjct: 123 LGTVINLIRTRNNDILIVK--NKLKIHQKNILIPFIDNKIIKNVNTDKKFILVQWD 176 >UniRef50_B7CD56 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD56_9FIRM Length = 162 Score = 165 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I + ++ +++G++G +++ T+D + F+ + G + + + ++ Sbjct: 1 MIKVAQIINTHGLKGECKLYLVTDDPQHRFEKGRVLHLEDG--RTLTVVRYREQKGFGYC 58 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +G+D + A L + + LP+LEEG YY+ +LM C V + +LG+VVD++E Sbjct: 59 YFEGIDSIEKAEQLKTKNLFIAQDDLPELEEGQYYYHELMNCTVYNEKKENLGEVVDILE 118 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+N VL +K+ L+PF+ ++ V+ T I + G Sbjct: 119 TGANLVLRVKSKNTS------FLLPFVPAFIV-DVNKDTHEIIIREMDGL 161 >UniRef50_Q38XQ8 Ribosome maturation factor rimM n=6 Tax=Bacilli RepID=RIMM_LACSS Length = 176 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWKHHNQ 68 P +GK+ +++GIRG +RV ++T+ E F ++ V + + + H Q Sbjct: 2 PEKYYQVGKIVNTHGIRGEVRVIATTDFTEERFKKGTHLAVEMPNGLTPVTVSAMRQHKQ 61 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTT-EGYDLGK 126 +++ +G+ + + L + + +S+ LE+ +YY+ D++G +V+ +G GK Sbjct: 62 FYLLQFEGLGNINDVELFKGHNLKIAASERDDQLEDDEYYYGDIIGLEVIEESDGTSYGK 121 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++++ G NDV VIK G + L+PFL VIKK+D+ V+ G Sbjct: 122 VSEIIDPGPNDVWVIKR-----RGRSDLLLPFLKS-VIKKIDIEAGKAYVEVPEGL 171 >UniRef50_B7J947 16S rRNA processing protein RimM n=4 Tax=Acidithiobacillus RepID=B7J947_ACIF2 Length = 171 Score = 165 bits (418), Expect = 7e-40, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 L A + +VLG++ YG+RG ++VFS TE +SI DY PW++ + LE + Sbjct: 2 LPASEAGEWVVLGRVSGIYGVRGMVKVFSFTESRDSILDYSPWYLGPD--RRPWVLEDGR 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 + ++ KL V+DR+ A L EI V + LP+L G++YW L G +V+ EG L Sbjct: 60 MQGEGVVAKLAQVEDREQARALIGQEIAVIRADLPELGAGEFYWSTLTGLRVLNREGIVL 119 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G V +ETG+NDV+VI D E L+P+ + VDL I VDW Sbjct: 120 GTVSAFLETGANDVMVI-----DDGKGGELLIPW-SAEASAGVDLPAGQIVVDW 167 >UniRef50_A3TRE4 16S rRNA-processing protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TRE4_9MICO Length = 183 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 85/183 (46%), Gaps = 13/183 (7%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA----GQWQQVQLES 62 + +++ ++G +G+RG + V + T+D E+ + F +A G + + + + Sbjct: 1 MPRSSNALLVARIGKPHGLRGEVTVQTHTDDPEARYVPGTVFDTEAQPGTGVPRTLTVST 60 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD---YYWKDLMGCQVVTT 119 + H Q ++ + DR A L ++ +D + ++E + +Y DL+G V Sbjct: 61 ARLHRQIWLLGFAEIPDRTGAESLRGTQLFLDPDEADEVESDEDDGFYEHDLVGLAVQDP 120 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G LG+V ++ D+L ++ ++ LVPF++ ++ ++D+ + VD Sbjct: 121 SGAVLGEVTGLVLGAVQDLLEVRLTN-----RRDVLVPFVEA-IVTEIDIEAGHVVVDAP 174 Query: 180 PGF 182 G Sbjct: 175 AGL 177 >UniRef50_Q10VX5 Ribosome maturation factor rimM n=4 Tax=Cyanobacteria RepID=RIMM_TRIEI Length = 208 Score = 165 bits (418), Expect = 8e-40, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 36/207 (17%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE----SWKH 65 + I +GK+ + G++G LRV+ S++ E + ++ GQ + + +E + Sbjct: 1 MSEWIEIGKIVAPQGLKGDLRVYPSSDFPERFTEPGKRWLLSPGQVEPISIELLSGRYVP 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDL 124 +I+L G+ R A L N +++++ PQLE ++Y DL+G V+ G + Sbjct: 61 GKGLYVIELAGIKSRQQAEALRNSQLLIEKGDRPQLEADEFYVPDLIGLTVINQLNGKTI 120 Query: 125 GKVVDMMETGSNDVLVIKANLKD-----------------------------AFGIKERL 155 GKV++++ ND+L ++ D + K+ L Sbjct: 121 GKVINII-FAGNDLLEVEKISTDTPVISEVVENNLPSKSKRSRDTKNQKKNQSPPSKKIL 179 Query: 156 VPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +PF+ +++ V+ IE+ G Sbjct: 180 IPFVK-EIVPIVNFEQSIIEITPPDGL 205 >UniRef50_B9M593 Ribosome maturation factor rimM n=4 Tax=Geobacter RepID=RIMM_GEOSF Length = 174 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 7/169 (4%) Query: 15 VLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMIIK 73 ++GK+ +++G+RG LR+ S + D +S + I+K G + + + K H + +I+ Sbjct: 9 LIGKVSATHGVRGQLRITSFSGDMDSFMALRSVMIKKPGGGMETLAVAEAKAHGKKIILS 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 LKG D + L EI V QLP L +G+YYW DL+G QV+T +G LG++VD++ T Sbjct: 69 LKGYTDINDVLHLVGREIYVLRDQLPLLSDGEYYWCDLLGLQVMTEDGDILGELVDIIST 128 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 GSNDV V+ G KE L+P LD V+ + V G Sbjct: 129 GSNDVYVVHG-----GGDKEILIPALDDVVLDVD-TVAGRMTVSLPEGL 171 >UniRef50_D2EI68 16S rRNA processing protein RimM n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EI68_PEDAC Length = 192 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 12/177 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQP-WFIQKAGQ----WQQVQLESWKH 65 ++ + K+ ++ G+RG L+V + T+ E F + K Q V ++S K Sbjct: 22 MNYYNVAKIVNTRGLRGELKVIAYTDFPEERFQAGTELQLFKDANATTPTQAVTVQSAKP 81 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 +I+L G+D + + + QL +L +G++Y ++G V+ +G LG Sbjct: 82 FKGMWLIQLAGLDSINEVEKFKGMMLKIAEDQLQELADGEFYQHKIIGLTVI-EDGQTLG 140 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 KV +++ G NDV V++ G K+ L+P+L+ V+ KVDL +EV G Sbjct: 141 KVKEILSYGPNDVWVVERP-----GKKDLLLPYLN-DVVLKVDLDKSIVEVAVPEGL 191 >UniRef50_C7RNG5 16S rRNA processing protein RimM n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RNG5_9PROT Length = 190 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ----WQQVQLESWKHHNQD 69 IVLGK+ + YG++G LRV +D W++ G WQQ +L + HN Sbjct: 24 IVLGKIVAPYGVQGALRVCPFADDPSGWSRLTHWWLASEGDAPEAWQQTRLLKCRLHNDM 83 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I +L GV DR AA + V + LP G+YYW DL+G V+ + G LG+++ Sbjct: 84 LIAELAGVVDRTAAEASCGKLVGVPRAALPPTAAGEYYWADLVGLAVINSRGESLGRIIG 143 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +++T +N V+ + ERL+PF+ V+ VDL R + VDW Sbjct: 144 LLDTPANAVMRV-----GDGQQGERLLPFV-AAVVLAVDLPGRFVRVDW 186 >UniRef50_A9B0N2 Ribosome maturation factor rimM n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=RIMM_HERA2 Length = 174 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 9/174 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +TA D +++G++ +++G+RG L++ + E I + F+ + + Sbjct: 1 MTAPNQDDFLLVGRISAAFGVRGELKISMISSHPEHIQKLKQLFV--GDLSKPYTIGRLH 58 Query: 65 HHNQD-MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 H +++L VD RDAA + E + S L +Y+ DL+G QV T G D Sbjct: 59 QHKGSLYLLRLNEVDTRDAAEAMQGLEAYIHRSDAAPLANDEYFLHDLVGLQVQTEAGED 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 +G+ V+++ETG+NDVLV++ G + LVP + V++ +D+ +I V Sbjct: 119 IGRAVEIIETGANDVLVVRK-----LGQADILVPMVR-TVVRSIDIAGGTITVT 166 >UniRef50_C0QKU2 RimM n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKU2_DESAH Length = 172 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQDMI 71 LG + +G++G+L+V S E+ ++++G+ + + H + ++ Sbjct: 5 LFTLGVVTGVHGLKGFLKVRSFAGSLETFKSGLEMVVRRSGKADECYTILKASPHKKGIL 64 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ GV DRDAA E++VD LP+ E+ Y+W+DL+G +V LG + +M Sbjct: 65 MQFSGV-DRDAAETFVGAELLVDRRLLPEPEDDAYFWEDLIGLKVTDRTLGFLGTIDSIM 123 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ETGSNDV V+K K KE L+P L V+ VDL + VD G Sbjct: 124 ETGSNDVFVVKNKDKG-LKNKEFLIPGL-ASVVIGVDLERGEMTVDLPEGL 172 >UniRef50_A6TRS7 Ribosome maturation factor rimM n=2 Tax=Alkaliphilus RepID=RIMM_ALKMQ Length = 168 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 + +G++ +++GI+G L+V S ++ E + + +IQ G ++ + + K+ Sbjct: 1 MKKMLKVGQIVNTHGIKGELKVTSLSDYLERFEELEWVYIQ--GYDEKYYIGNIKYRPTT 58 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+ +G D+ + +++D SQ +L E +Y DL+G T E LGK+VD Sbjct: 59 VILSFEGYDNINIVEQFKGKYVLIDESQRRELPEDTFYKADLIGLDGYTVEEVYLGKLVD 118 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ GSN+V V + D K+ L+P + + I ++ L + I VD G Sbjct: 119 IIQAGSNEVYVFR----DKETNKDILIPAVK-EFIPEISLEKKRITVDPIEGM 166 >UniRef50_C0XS98 16S rRNA-processing protein n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XS98_9CORY Length = 182 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 86/170 (50%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMII 72 +++GK+ S+GI+G + V T+D + F + G+ +++ +++ + H +++ Sbjct: 19 LLIGKVVKSHGIKGEVAVEVLTDDPDQRFAVGEVLTGRQPGKERELTIKTLRPHQNRLLM 78 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + V DR A+ L + + E ++Y +L+G +V+ EG ++G+V +M+ Sbjct: 79 SFEEVPDRTQADSLRGMQFFAPPLEREDDSE-EFYDHELIGLKVIH-EGREVGEVTGVMD 136 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T + +L I + +E LVPF+ + ++DL +++ + G Sbjct: 137 TPNRKILEID------YDGREVLVPFV-IDFVPEIDLGEQTLTITPPEGL 179 >UniRef50_A8SPN7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SPN7_9FIRM Length = 181 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 6/170 (3%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 D + +G + SS+GI+G ++V+ +T+D + + ++ + +V S K Sbjct: 3 HNTEDRLRVGVITSSHGIKGEVKVYPTTDDNDRFKTLEKCYLSNGRETLEVNCTSCKFLK 62 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +I+K + D+ + N +I+VD L +G+++ D++ V +G + Sbjct: 63 NMVILKFEEYDNINDIERFKNYDILVDREDAVPLMDGEFFICDVLDADVYDQNDEHIGIL 122 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 D++ET +NDV V+K + E L+P + + VD R ++V Sbjct: 123 DDVLETPANDVFVVKKD-----DGGELLIPVV-SDFVYDVDTENRKVKVR 166 >UniRef50_C5RAC2 16S rRNA processing protein RimM n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAC2_WEIPA Length = 191 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 91/182 (50%), Gaps = 8/182 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDA-ESIFDYQPWFIQKAGQWQQVQ 59 +++ + + + +GK+ +++GIRG +R+ +T+ E + IQ VQ Sbjct: 14 INRTIEKEENMALYKVGKIVNTHGIRGEVRIVPTTDFPAERFKKNKNLIIQTPEGNLTVQ 73 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 + + + H Q M++ G+ + + +CE+ V L + ++Y+ +++G V+ Sbjct: 74 IATSRQHKQFMLVSFVGMGNINDVEQYKDCEVFVADELQQALPDDEFYYHEIIGLDVIDN 133 Query: 120 -EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +GKV ++M +NDV V+ A G ++ L+PF++ V+ +DL T + +V+ Sbjct: 134 ATNEIIGKVSEIMPMPANDVWVV-----HAKGKEDLLLPFIE-DVVTAIDLDTGTAKVNL 187 Query: 179 DP 180 Sbjct: 188 LE 189 >UniRef50_A7IIB1 Ribosome maturation factor rimM n=2 Tax=Xanthobacteraceae RepID=RIMM_XANP2 Length = 185 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D I++ ++G+ +G+RG +R+F TED ++ DY P + ++ + + Sbjct: 1 MADRILVARIGAPHGVRGEVRLFVFTEDPGAVLDYDPLTDATGKKR--FRIAALRAAKDH 58 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGD-YYWKDLMGCQVVTTEGYDLGKVV 128 + +++G+ DR AA LTN ++ V LP ++ D +Y DL+G VV G +GKVV Sbjct: 59 FVARIEGIADRTAAEALTNLDLFVPREALPPPDDDDTFYHADLIGLDVVDEAGVVIGKVV 118 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 + + G+ D+L A A K +VPF + VD+ R + V Sbjct: 119 ALQDFGAGDILEY-APTLPATKAKTLMVPFSKDA-VPVVDVPGRRVVV 164 >UniRef50_Q24UA8 Ribosome maturation factor rimM n=2 Tax=Desulfitobacterium hafniense RepID=RIMM_DESHY Length = 170 Score = 162 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 93/172 (54%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +D +++G++ +G++G ++V+ T++ + + + + + +++++ H ++ Sbjct: 1 MDEVLIGEVIKPHGVQGEIKVYPITDNPKRFRKLKEVILVQNQEQRRLKVLHANVHQSEV 60 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + L+G++ RD A + + D Q+P L+EG +Y+ +L G QV LG + + Sbjct: 61 YLTLEGINTRDKAEAIRGWAVKADRDQVPPLKEG-WYYFELEGMQVY-EGDVLLGTLAQV 118 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++TG+NDV ++K + E VP L V+K VD+ + ++V+ PG Sbjct: 119 IQTGANDVYLVKGDKG------EICVPALK-TVVKHVDVAGKRMDVELPPGL 163 >UniRef50_C6QFI5 16S rRNA processing protein RimM n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QFI5_9RHIZ Length = 185 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 8/176 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +T I+LG++ +GIRG + V + T ++I Y P + A + L+ + Sbjct: 1 MTKDEHSKRILLGEISGVHGIRGDILVRTYTATPDAIASYGP--LTDATGTKTFSLKIVR 58 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 ++ ++ ++ G+ DR A L ++ + +LP+ ++Y DL+G V + + Sbjct: 59 VTDKGVVARIAGISDRTTAEALRGTKLFIAREKLPETSASEFYHSDLIGLNAVAEDNTPI 118 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 GK+V + G+ D+L ++ + +PF + Q + KVDL+ R++ + P Sbjct: 119 GKIVSVQNFGAGDLLELQPPEGASE-----FIPF-EDQWVPKVDLSARTVVIRRPP 168 >UniRef50_A4QFB9 Ribosome maturation factor rimM n=12 Tax=Corynebacterium RepID=RIMM_CORGB Length = 171 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-GQWQQVQLESWKHHN 67 + + +GK+ S+GIRG + V ST+D + F K G+ + +++ + H Sbjct: 2 STEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQ 61 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++K V DR AA+ L + + +E +Y +L +V+ EG D+G+V Sbjct: 62 GRLLVKFAEVPDRTAADSLRGTRFFAAPLE-DEDDEDGFYDHELESLRVIH-EGEDIGEV 119 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +M + ++L ++ KE L+PF+ ++ +VDL + + G Sbjct: 120 TGVMHGPAGEILEVRLTS-----GKETLIPFVHA-IVPEVDLEEGTATITPPEGL 168 >UniRef50_Q688X2 Os05g0566300 protein n=4 Tax=Poaceae RepID=Q688X2_ORYSJ Length = 304 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 22/191 (11%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQ----KAGQWQQVQLESWKHHN 67 +V+G + ++G+RG + V T+ + +++ Q ++ +L + H Sbjct: 76 LVVVGYVSGAHGVRGDVLVSPRTDFPQLRFATPGKRWLRARAAGKQQVKEFELVRGRAHT 135 Query: 68 QD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDL 124 I+ GVD D A + I+V P++EE + Y DL+G +V+ + G + Sbjct: 136 GKKSWIVTFDGVDSVDEARQIVGSAILVKVGDRPKMEEDEIYSLDLVGMRVIVKDTGKLV 195 Query: 125 GKVVDMMETGSNDVLVI-------------KANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 G V + G+ D+L + N + +PF + ++ +D+ + Sbjct: 196 GTVGQVFNFGAGDLLQVMVGGTEDTVSQPNSENQGSTPSGEHVWIPFAE-DIVPDIDMES 254 Query: 172 RSIEVDWDPGF 182 R + + G Sbjct: 255 REMWITPPKGL 265 >UniRef50_Q3AC71 Ribosome maturation factor rimM n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RIMM_CARHZ Length = 172 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 + I +G + ++GI GW++V T+ + + + F +K + +++E + + Sbjct: 1 MNNLIAIGYVLGTFGIEGWVKVEPLTDHPQRFLNTERVFWEKEDEIFPLRIEEVQLQAER 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++K ++D AN L + + +++ QL+E ++Y L G V +G V Sbjct: 61 ILVKFMEINDIKEANKLIFGYLKIPKNEIVQLKENEFYLFQLKGLTVYDLNYQKIGVVRT 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +++ +ND+LVI KE L+PF+ +K+V+L I+V+ PG Sbjct: 121 VLKNPANDLLVIDT-----IHDKELLLPFIK-VFVKEVNLPEGFIKVELLPGM 167 >UniRef50_D2RIH1 16S rRNA processing protein RimM n=2 Tax=Acidaminococcus RepID=D2RIH1_ACIFE Length = 164 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 9/171 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 IV+GK+ + +G+RG R+ T+ E + + ++ + S + H Sbjct: 1 MEQHIVIGKIVAPHGVRGEFRIMPQTDHPERYAKMKKITLDNG---REYTVVSLRQHKNV 57 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++K++G+D + A L IV+ +LP L EG +Y +D++G VT EG +G + D Sbjct: 58 YLMKVEGIDSMNDAETLRGRTIVLRPEELPPLPEGQFYVRDIIGFAAVTPEGETVGTLKD 117 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++ GS DV VI + + LV + G I+ +D + I V Sbjct: 118 VLSPGSTDVFVIAPPQGE-----DILVAAI-GDNIRNIDWEKKQITVVLPE 162 >UniRef50_UPI000185BF33 16S rRNA processing protein RimM n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BF33 Length = 169 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 90/173 (52%), Gaps = 11/173 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQD 69 D +++G++ +G+RG + V ++T+D E F + +AG+ +Q+ +++ + H Sbjct: 4 ADMVLIGRVIKPHGVRGEVVVDATTDDPEGRFAVGTTLLGVQAGREEQLTVKTARPHQGR 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++++ + + R+ A + + P E+ D+Y +L+G VV G D+G+V Sbjct: 64 LLVRFEEIPGRNEAERHRGMKFYAE----PVFEDEDFYDFELVGLHVVH-NGTDIGEVTS 118 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ ++ +L + + G +E L+P ++ +++ +VDL ++ + G Sbjct: 119 IVRAPAHRLLEVTLD----AGGREVLIPLVE-EIVPEVDLENSTVTITPPEGL 166 >UniRef50_Q0IDP0 Ribosome maturation factor rimM n=11 Tax=Synechococcus RepID=RIMM_SYNS3 Length = 187 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 1 MSKQLTAQAPV-----DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQ 54 M+ + D + +G + + G++G LR+ +++ E + ++Q K Sbjct: 1 MTSTPSPSTADPNSTNDWLPVGTLVGAQGLKGELRLNPASDFPERFTEPGTRWLQAKGSA 60 Query: 55 WQQVQLESWK--HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLM 112 ++V+L + +++LKGV++R +A L C ++V + P+L EG+++ DL+ Sbjct: 61 PKEVELLEGRQLPGKSLYVVRLKGVNNRASAEALVGCTVLVPAKDRPELAEGEFHLLDLV 120 Query: 113 GCQVVTT-EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 G + +G V +++ G ND+L IK N K LVPF++ ++ V L Sbjct: 121 GLEARLAGSDEPIGTVSNLIS-GGNDLLEIKLNS-----GKTVLVPFVEA-IVPDVQLEE 173 Query: 172 R 172 Sbjct: 174 G 174 >UniRef50_C7LP63 16S rRNA processing protein RimM n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LP63_DESBD Length = 182 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQ 68 PV + LG++ +G+RG L + + +++ G+ + LE W+ H Sbjct: 8 PVKLVELGRVQKPHGLRGELCIEPYADSPFIFEGLTRVYLRLPGKKPKPCVLEGWRAHQG 67 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +I + RD A +++ LP L+E ++ +DL+G V+ G +G + Sbjct: 68 RALITVDRSQGRDQAEAWRGADVLARERDLPPLDEDEFRPEDLLGLPVMHVNGSRIGVLE 127 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ + ++ I + + E ++P +D + I +DL I VD G Sbjct: 128 DIRDVAGQELWFILDDAGN-----EIMLPAVD-EFILDIDLEAGVILVDPPDGL 175 >UniRef50_Q47BI6 Ribosome maturation factor rimM n=3 Tax=Rhodocyclaceae RepID=RIMM_DECAR Length = 170 Score = 160 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 93/168 (55%), Gaps = 7/168 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDM 70 D +VLG++ YGI+GWL ++ +D + + W+I + G+ W++ +L+S K H + Sbjct: 5 DIVVLGRLADPYGIQGWLWLYPFGDDPLAWAEMPVWWIAREGEPWRECRLKSLKAHGNGV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++ L GV DR AA + + LP E+ ++YW DL+G V+ T +GKVV + Sbjct: 65 VVLLDGVADRTAAESMKGVLVGAPREALPTTEKNEFYWTDLIGLDVINTADERIGKVVGL 124 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +ETG+N VL + + ERL+PF+ V+ V+ I V+W Sbjct: 125 IETGANSVLRVMGD-----DKVERLLPFVSA-VVLAVEKEAGQIRVEW 166 >UniRef50_A0QJ46 Ribosome maturation factor rimM n=16 Tax=Actinomycetales RepID=RIMM_MYCA1 Length = 175 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI---QKAGQWQQVQLESWKHHNQDM 70 + +G++ ++GI G + V T+D + F + G + +ES + H + Sbjct: 3 LTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSRGGPERSCVIESAREHGGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEE-GDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L GV DRDAA+ L VVDS++LP ++E YY L G QV TT G +G V + Sbjct: 63 LVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGAVAE 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T + ++L ++ + A +E LVPF+ ++ V L IE+D G Sbjct: 123 VLHTAAGELLAVRDDADGA--PREVLVPFVSA-IVTAVSLDDGLIEIDPPDGL 172 >UniRef50_C1F3B3 Ribosome maturation factor rimM n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RIMM_ACIC5 Length = 213 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 12/176 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ----WQQVQLESWKHHNQ 68 + L + G RG + T+ E + + F+ + ++++L ++ Sbjct: 6 WVTLAHIVRPQGRRGEVIAELLTDFPEKFAERRHVFLTRDAASDAAPREMELAGYRLAQN 65 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKV 127 +++ G+D DAA +L ++V+ S+ L++ Y DL+GC V G +G V Sbjct: 66 RVVLHFAGIDSIDAAEMLRGLDVVIPESERAPLDQDAAYISDLIGCDVWDEAAGQRVGIV 125 Query: 128 VDMMETGSN-DVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D+ S+ D+LV+ +PF+ ++K +D T + I + G Sbjct: 126 QDVDRQASHVDLLVVDCENGQRAE-----IPFVKAFLVK-LDTTGKRITMRLPEGL 175 >UniRef50_D1B6K4 16S rRNA processing protein RimM n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6K4_THEAS Length = 181 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA------GQWQQVQLESWKHH 66 + +G + ++GI+G L++ T+ E + +++ +++++ + Sbjct: 7 RVTVGCIVGTHGIKGSLKLKPLTDYPERFLHMETLYLELPQVKGRHRPPRELKILDVRFQ 66 Query: 67 NQD--MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYD 123 + I+ L+G+D + A L I V LEEG Y+ D++G +VV Sbjct: 67 DGKDLFIVTLEGIDTIEMAEDLKGALITVAPEDRVPLEEGVYWIDDIIGLEVVEDETDAV 126 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 LG V D+M TGSNDV ++ ++P G+VI+KVDL R I V G Sbjct: 127 LGVVEDVMPTGSNDVYEVRTPDGVLK-----MIPAT-GEVIRKVDLEARQIRVHLLEGL 179 >UniRef50_Q2RV58 Ribosome maturation factor rimM n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=RIMM_RHORT Length = 201 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + +++G + S+G+RG +RV S T+D ++ DY P + + V++ + +I Sbjct: 3 ERLLVGVIVGSHGVRGLVRVKSFTQDEMALCDYGPLSDETGTRRFAVEVRN--QAKGVVI 60 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQ--LEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ GV DR AA+ L + +D + LP LEE +YY DL+G V +G LG V Sbjct: 61 CQIPGVSDRTAADALKGTRLFLDRAALPADALEEDEYYHADLIGLPVDLVDGGRLGVVHS 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + G+ D+L + A G + L+PF V+ VD+ + D G Sbjct: 121 VHDFGAGDMLEVTL----AQGRRSVLLPFTKA-VVPLVDVKAGRLVADPPLGL 168 >UniRef50_Q03W51 Ribosome maturation factor rimM n=3 Tax=Leuconostoc RepID=RIMM_LEUMM Length = 173 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 85/177 (48%), Gaps = 7/177 (3%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDA-ESIFDYQPWFIQKAGQWQQVQLESWKH 65 + +G + +++GIRG +++ + T+ A + FI V+++S + Sbjct: 1 MTNTENYFKVGTIVNTHGIRGEVKIMAITDFAQDRFKKGADLFIDTKQGRIPVKVQSSRL 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLG 125 H ++ GV + + ++ ++ + P+LE+ YY+ +++ VV +G +G Sbjct: 61 HKNMWLVLFVGVTNINEIEKYKGDDVYIEGTARPELEDDQYYYDEIIDSTVVDLDGNKIG 120 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++METG+NDV +++ + G + L+P +D V + + I +D G Sbjct: 121 VVKEIMETGANDVWIVQRD-----GQSDALIPMIDDVVKSVD-VDAKLITIDALEGL 171 >UniRef50_B2GFY3 Ribosome maturation factor rimM n=2 Tax=Micrococcaceae RepID=RIMM_KOCRD Length = 191 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 83/188 (44%), Gaps = 25/188 (13%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-----------------IQKAGQWQ 56 + + ++G +G+RG + V T+D ++ F ++ Q Sbjct: 3 VRVARIGKPHGVRGEVTVELFTDDPQARFAPGSVLSIQHARGGRRGQGSAADAREPLAVQ 62 Query: 57 QVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQV 116 + + + + ++ + + + DR+AA E+ + + LP LE+ +++ DL+G Sbjct: 63 SLTVTGHRWNKDVLVARFEEISDRNAAEAARGLELFAEVADLP-LEDDEWHQDDLLGLVA 121 Query: 117 VTTEGYD--LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSI 174 V + +G V +++ + D+L I G + LVPF++ +++ +VDL + Sbjct: 122 VDLTRGEARIGTVKALIQGSAQDLLEITPQG----GGRTVLVPFVE-EIVPEVDLDRGLV 176 Query: 175 EVDWDPGF 182 V PG Sbjct: 177 LVSPPPGL 184 >UniRef50_C9M790 16S rRNA processing protein RimM n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M790_9BACT Length = 172 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 9/176 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQ---QVQLESWKHH 66 D +V+ K+ +G++G +RV T+ E + G+ ++ Sbjct: 1 MEDRVVIAKVVGPHGVKGAVRVAPLTDFPERFETMTRVRFYRDGEEVGQYPLKNVGELRS 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I++L G+ D A L C I V ++ L EG Y+ +DL+G Q G LG Sbjct: 61 KGQIILELGGLSDAAEAEALRGCFICVPPDEMVPLPEGQYWIRDLVGLQAKDETGEVLGV 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V D++ TG++D+ I+ K+ LVPF+D Q I++V L R + + G Sbjct: 121 VRDVLTTGASDIFEIEG-----LDGKKHLVPFVD-QFIRQVSLDRRELVISMMEGL 170 >UniRef50_Q04FP6 Ribosome maturation factor rimM n=1 Tax=Oenococcus oeni PSU-1 RepID=RIMM_OENOB Length = 166 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 91/172 (52%), Gaps = 9/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 + + +G++ +++GI G L++ +T+ E F + +++ ++S + Q Sbjct: 1 MKELRIGRVINTHGIAGELKIDFNTDFPEQRFAKNSELLIAG---EKLVVQSSRPFKQFW 57 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++K ++ + +I ++ + P+L EG++ ++G +V+ +G +G++ D Sbjct: 58 LVKFSDHENINLVEKYKGEDIFINERKEPRLSEGEFLVSQIIGLKVIDEKGNSIGEIADS 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDV IK + KE L+P++D QV+KKVDL T ++ ++ G Sbjct: 118 FHTGANDVWTIKKSN-----GKEILIPYID-QVVKKVDLQTSTVTIELLEGL 163 >UniRef50_B5W499 16S rRNA processing protein RimM n=2 Tax=Arthrospira RepID=B5W499_SPIMA Length = 212 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 38/209 (18%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG--QWQQVQLESWK--H 65 D I +GK+ ++ G+ G +RV+ +++ E + ++QK G + V+L + Sbjct: 1 MSDWIEIGKIVAAQGLDGEMRVYPNSDFPERFIEPGTRWLQKPGQNEPSPVELLGGRFIP 60 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD-L 124 I++ GV+ R+ A L + + + P L++ ++Y DL+G +V + D + Sbjct: 61 GKGLYAIEMVGVETREQAEALRDSRLFIQYGARPHLDDNEFYVLDLIGLEVFNQDTQDMI 120 Query: 125 GKVVDMMETGSNDVLVIKAN-------------------------------LKDAFGIKE 153 G V+D++ G ND+L ++ N A K Sbjct: 121 GTVIDVIPAG-NDLLEVQLNFTPTEEDLATDTERQAKLEKIPQNKRRKRHFQTKAKQPKT 179 Query: 154 RLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 L+PF+ ++ VDL R +E+ G Sbjct: 180 VLIPFVK-DIVPVVDLENRRLEITPPQGL 207 >UniRef50_C7NGX6 16S rRNA processing protein RimM n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGX6_KYTSD Length = 182 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 S + P + L ++G + ++G + V T++ E + + + Sbjct: 5 SNRERGSIPEGMVRLARIGKPHALKGEVTVQLHTDEPEVRLAVGTAVQTVPAEEGPLTIA 64 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 S + H ++ + V RD A L +V + + +L+ +Y +DL G +VV +G Sbjct: 65 SRRVHQGVTLLGFEQVTGRDGAEALRGVVLVAPADE--ELDGEGFYPEDLRGLEVVDGQG 122 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 LG V D+ + D+L + + LVPF++ +++ VDL + V G Sbjct: 123 EPLGAVKDLHLRPAQDLLEVTTTAGH-----DVLVPFVE-ELVPHVDLEAGQVTVTAPAG 176 Query: 182 F 182 Sbjct: 177 L 177 >UniRef50_Q3Z8Z0 Ribosome maturation factor rimM n=5 Tax=Dehalococcoides RepID=RIMM_DEHE1 Length = 167 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 11/176 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 + I++GK+ +GI G L++ T+ E I +A + Sbjct: 1 MTQEEEYILIGKVLGVWGINGGLKIEVLTDFPERFDAGNELLIGRA----PYTISQTSWQ 56 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I+ L + DAA L+ ++ + ++ L +L +G YY L+G +V G +G+ Sbjct: 57 KAQVIVHLSEITGIDAAEELSGAQVEIPAAALKKLPKGVYYDFQLIGLEVTDLSGNRIGQ 116 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++ SND+ V ++G KE L+P + V+K+++L + +D PG Sbjct: 117 IKEILHMPSNDIYV------SSYGAKEALIPAVK-DVVKEINLQKGQVIIDPIPGL 165 >UniRef50_A0Z7M6 16S rRNA processing protein RimM n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7M6_9GAMM Length = 180 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 9/173 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-----VQLESWKHHNQ 68 +VL ++ ++GI+GWL++ ED + + + + +Q V++ + + + Sbjct: 5 LVLAEVLGAHGIKGWLKIRPLVEDPTFLEGLEGLVLASGPKMRQADSRGVKVTNLRPQGR 64 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY---DLG 125 +I++ GVDDR A L + ++ LP LE+GD+YW+DL G +V LG Sbjct: 65 GWVIQVSGVDDRTQAEALRGMVLRGSAALLPDLEDGDFYWRDLEGLRVWCEAPEGLCLLG 124 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ ++ETG+NDVLV++ + + KERL+P+L +V+ VD+ ++ V W Sbjct: 125 EIDHLLETGANDVLVVR-PCEGSMDDKERLIPWLVDEVVHSVDMDAGTVRVIW 176 >UniRef50_Q0SSB0 Ribosome maturation factor rimM n=12 Tax=Clostridium RepID=RIMM_CLOPS Length = 165 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 94/169 (55%), Gaps = 12/169 (7%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D +V+G++ +++G+RG ++V TED + ++ Q++++E K+ Sbjct: 1 MEDLLVVGQIINTHGLRGEMKVMPLTEDMRRFDYLEYVILKG----QKIKVEGVKYFKDK 56 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+KL+G++ + A L + ++ +LEE +Y+ DL+GC VV TEG++ GK+ D Sbjct: 57 VILKLQGINSIEEAEKLKRTYLEIEREDAIELEEDEYFIVDLVGCTVVDTEGFEYGKIKD 116 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 +++T SNDV ++ G KE LVP L ++ +++ + I + Sbjct: 117 VIQTPSNDVYWVQ-------GKKEVLVPVLK-DIVLDINMDEKLITIRP 157 >UniRef50_A6LNY7 Ribosome maturation factor rimM n=2 Tax=Thermosipho RepID=RIMM_THEM4 Length = 178 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 8/171 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQV--QLESWKHHNQD 69 D + + +G ++G+ G LR+F T E I + FI + + ++ N Sbjct: 11 DKVPIAVLGKTHGLNGELRLFPLTNMPEVIESLEEVFIYNEKVKKLLIGRIIHMSLANGY 70 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 I+K +G+D + A + ++ S+LP L +YY+ +++G +V +G LG + + Sbjct: 71 YIVKFRGIDTLNDAKKFVGSTLYIEKSRLPILSSDEYYFYEVIGMKVYDEKGIFLGNIDE 130 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +++TGSNDV VI + KD E L+P + + + ++D + I V Sbjct: 131 VIQTGSNDVFVINKDTKD-----EILIPVIK-EYVLQIDKKSNKIVVKLPE 175 >UniRef50_A0JXU0 Ribosome maturation factor rimM n=4 Tax=Micrococcaceae RepID=RIMM_ARTS2 Length = 197 Score = 159 bits (402), Expect = 6e-38, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 84/169 (49%), Gaps = 7/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + ++G +GIRG + V T+ E F F+ + + ++S + + +++ Sbjct: 3 LQVARIGKPHGIRGEVTVQVLTDAPEDRFIPGTRFVVEPASAGPLTVDSARWNKDILLLG 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 +G++ R+ A L ++ +++ +L + ++ +Y +L+G V +G + + Sbjct: 63 FEGIETRNQAEALRGAKLFIETEELEEEDDEGWYEHELVGLDVR-VGDAVVGTISGLRTL 121 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++V+++ KE L+PF++ +++ +V++ + I V PG Sbjct: 122 PVQDLIVVESP-----DGKEILIPFVE-EIVPEVNVGEKYILVTPPPGL 164 >UniRef50_B0P6R8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P6R8_9FIRM Length = 185 Score = 158 bits (401), Expect = 7e-38, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 9/171 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + GK+ +++G+RG +RV + + + ++ G +V +E + H +I+ Sbjct: 20 YLESGKIVTTHGVRGEVRVQPWCDTPGFLTQFACLYLDARGSQARV-VERARVHKNIVIV 78 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMM 131 K +GV++ + A L + +D + + +LEEG+ + +DL+GC V + G D G+V D+ Sbjct: 79 KFEGVENVEDAAGLRGKTVYIDRADV-ELEEGECFVQDLIGCTVRDADTGADYGQVYDVR 137 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 TG+NDV ++ +ERLVP + V+ DL I + G Sbjct: 138 ATGANDVYYLRD-----AAGRERLVPAI-ADVVLAKDLDAGIITIRPLEGL 182 >UniRef50_B1VYW1 Ribosome maturation factor rimM n=20 Tax=Actinomycetales RepID=RIMM_STRGG Length = 198 Score = 158 bits (400), Expect = 9e-38, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 +V+ ++G ++GI+G + V T++ E + + +E+ + H+ ++++ Sbjct: 3 LVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATEPAATGPLTVEAGRVHSGRLLLR 62 Query: 74 LKGVDDRDAANLLTNCEIVVD-SSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 +GV DR A L N ++ + EE ++Y L+ VV +G +G++ ++ Sbjct: 63 FEGVRDRTGAEALRNTLLIAEVDPDELPEEEDEFYDHQLIDLDVVLADGTGIGRITEISH 122 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 S D+ +++ E ++PF++ +++ ++DL + + PG Sbjct: 123 LPSQDLFIVERP-----DGSEVMIPFVE-EIVTEIDLEEQRAVITPPPGL 166 >UniRef50_A1UR20 Ribosome maturation factor rimM n=5 Tax=Bartonella RepID=RIMM_BARBK Length = 191 Score = 158 bits (400), Expect = 9e-38, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 10/166 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 ++L + +++GIRG + V + + + Y + K + ++ S + H ++I++ Sbjct: 12 VLLAVIRAAHGIRGDVVVNLLGAEPQRLKTYGVLYDDKG---RLYEIVSMRVHKNNVIVR 68 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 KGVDDR A L ++ ++ Q L+ ++Y DL+G +V LG+V Sbjct: 69 FKGVDDRSTAEALKGVQLYIERDQFADDLDTDEFYQIDLIGLRVYDNTNQLLGEVSGFFN 128 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G+ D+L ++ K L+PF + ++ + + + VD Sbjct: 129 FGAGDLLEVR-----LISHKTELIPFSKAA-VPEICVASGFLVVDP 168 >UniRef50_Q1YDR7 16S rRNA processing protein rimM n=2 Tax=Aurantimonadaceae RepID=Q1YDR7_MOBAS Length = 194 Score = 157 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 +P++LG +G + GI+G RV S T D + Y P + + S + + Sbjct: 8 ENPVLLGVVGGAQGIKGECRVRSFTADPTDLGAYGPLVDASGNR---YTVLSARVAKNVV 64 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQL-EEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ K V DR+ A L ++ VD S LP+ ++ ++Y +DL+G V T G +G V+ Sbjct: 65 VVRFKEVADRNHAERLNGRKLFVDRSVLPEPADDDEFYLEDLVGYAVETVAGDAVGTVIA 124 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW-DPGF 182 + + D++ I+ + ++PF + I +D R + V+ G Sbjct: 125 FHDFNAGDIVEIRPT-----KGQTLMIPFSEAA-IPVIDAERRLMVVEPGPAGL 172 >UniRef50_A4SW74 Ribosome maturation factor rimM n=2 Tax=Polynucleobacter necessarius RepID=RIMM_POLSQ Length = 188 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 93/187 (49%), Gaps = 17/187 (9%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI-------------QK 51 ++ + + I LG + + G++G ++V + D ++ + ++ + Sbjct: 1 MSTPSLDNLIELGAISEAQGLQGQVKVRPHSPDPVALLSSKVVWLSLLPRRSAGALSSTE 60 Query: 52 AGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDL 111 Q +++S K H+ ++++ L GV DRD A L I++D P+ E YYW DL Sbjct: 61 EATLTQYKVKSAKMHSGNVVLTLDGVSDRDQALALKGARILLDRDAFPKAESDSYYWVDL 120 Query: 112 MGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTT 171 +GC+ + LG V+D+ E G++ V+ I + + LVPF+ +V++ VDL Sbjct: 121 IGCKAKNLQDEILGDVIDVTENGAHGVIAI---GDISTKTIQYLVPFVK-EVVRNVDLPN 176 Query: 172 RSIEVDW 178 + + +DW Sbjct: 177 KLLTLDW 183 >UniRef50_C7MB75 16S rRNA processing protein RimM n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB75_BRAFD Length = 194 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQLESWKHHNQDMII 72 +++ +G ++G+RG + + T+ E F ++ AGQ + + ++S + + Sbjct: 6 VIVATIGRAHGLRGEVALTLRTDQPEERLQPGTAFEVEVAGQVRALTVQSTRMQQDRWYV 65 Query: 73 KLKGVDDRDAANLLTNCEIVV--DSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 + + VDDR A L ++V+ D+ Q + + +Y L G V +G +LG V + Sbjct: 66 RFEEVDDRTGAASLRGIDLVLSLDAEQEAEEDPDAWYPAQLKGLSVRHVDGRELGTVAGV 125 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+LV++ + +P ++ +++ +VDL + D G Sbjct: 126 DHYPAQDLLVVRTP-----DRRRVQLPLVE-ELVPEVDLEQGVVIADPPGGL 171 >UniRef50_C1TLS3 16S rRNA processing protein RimM n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLS3_9BACT Length = 177 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 11/177 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQW----QQVQLESWKHH 66 D + +GK+ + +G++G +VF T+ + + + ++ Sbjct: 4 DDLVEVGKVIAPHGVKGEFKVFPLTDFPDRFESMDELNLYDGKGRFIKAVPISSVRFRPD 63 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLG 125 +++I + DRD A L I V Q L EG+Y+ DL+G V+ G +G Sbjct: 64 KGEVMITSPKICDRDEAESLRGLLIKVSKDQRRDLPEGEYWIDDLIGLSVIDEGSGETIG 123 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+M TG +DV +K + ++P + G+ + VD+ + ++V G Sbjct: 124 TLCDVMVTGGSDVYTVKRP-----DGRNMMIPAV-GEYVSSVDIASGVLKVKNIEGL 174 >UniRef50_B8CW20 Ribosome maturation factor rimM n=1 Tax=Halothermothrix orenii H 168 RepID=RIMM_HALOH Length = 170 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 7/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 I +GK+ + G +G +RV T+ E + F+ + + + ++E + H + + Sbjct: 3 DKMITIGKVTTHQGNKGEVRVLPLTDYPERFELLEQVFLVRDNRVIEKRVEQIRFHKKFV 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 IIK +G+DD AA + I + + L EG Y+ +L+G +V T EG LGKVVD+ Sbjct: 63 IIKFEGIDDIGAALAYKDYFIKIPREETLDLPEGHYFIFELLGFEVYTDEGIFLGKVVDI 122 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TG D++ +K + K+ +VP +++ ++ I + PG Sbjct: 123 ITTGGTDIIKVKGD------KKDYMVPAAR-EIVVNINPDEEKIIIKPIPGL 167 >UniRef50_Q2GIL4 Ribosome maturation factor rimM n=1 Tax=Anaplasma phagocytophilum HZ RepID=RIMM_ANAPZ Length = 171 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 9/174 (5%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 I+LG + +++G+RG +++ + T D I Y P + + +V + S Sbjct: 1 MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGP--LTDGSESLKVSVMSV-IK 57 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 N +I K+ G+DDR +A L N ++ V SS LP+L+ ++Y +L+G V + G Sbjct: 58 NGCVIAKISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGI 117 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 V ++ GS D++ I K+ + F +D+ TR + + Sbjct: 118 VTEVFNFGSGDIVEISTPQ-----GKKEMFSFTSNIF-PSIDMKTREMTIVPPE 165 >UniRef50_A5N815 Ribosome maturation factor rimM n=19 Tax=Clostridium RepID=RIMM_CLOK5 Length = 162 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 12/171 (7%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 D I +G++ +++G++G L+V+ T+D + + +++ + K ++ Sbjct: 1 MKDFITVGQIINTHGLKGELKVYPLTDDINRFKELKSVYVEG----ILKNITGCKLQSKK 56 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I+K++G+D + A + V +LEEG Y+ D++GC+V+ EG GK+ + Sbjct: 57 VILKIEGIDSIEKALEYKGKYLEVSRENAVKLEEGRYFIVDIVGCRVIDEEGVFYGKISE 116 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++ T NDV IK + E L+P ++ V+ KVD+ + I + Sbjct: 117 VIHTHRNDVYWIKGDN-------ELLIPAIEN-VVLKVDVEKQEIIIKPVE 159 >UniRef50_C4FZ72 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZ72_ABIDE Length = 181 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 10/181 (5%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--------KAGQWQQVQLE 61 + +G + S++G+ G ++VF +T+ + + FI K +V++E Sbjct: 1 MENYFRVGVLTSTHGLTGGIKVFPTTDCLDRFDSLKRAFIDLSSGKGTIKGNGMLEVEVE 60 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG 121 + K+ I+ KG+D+ D +++V L EG++Y D++GC+V+T G Sbjct: 61 NVKYFKNTPIVTFKGIDNVDLVAKYKGMDLLVAREDALPLAEGEHYVSDVIGCKVITDTG 120 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 + G V +++ETG+N VLV+K N KE +P + + + +++ ++V G Sbjct: 121 KEYGVVSEVIETGANKVLVVKPNEAHKEL-KEFCLPHI-PECVLEINTEEGFVKVHIMKG 178 Query: 182 F 182 Sbjct: 179 L 179 >UniRef50_B0JU07 Ribosome maturation factor rimM n=5 Tax=Chroococcales RepID=RIMM_MICAN Length = 192 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ--KAGQWQQVQLESWK--HH 66 + + +G + + G+ G LRV S ++ E IQ + G+ +++ L + Sbjct: 3 ENWLEIGTIVAPQGLEGELRVLSVSDFPERFQKRGMRGIQGPQGGEIREITLLRGRELPG 62 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLG 125 +IKL+GV++R+ A L ++ + + P+L+ +Y+ +L+ +V G +G Sbjct: 63 KNVYVIKLEGVENREQAEALRGYKLWANKLEKPRLKADEYHVSELVNLEVYHHLTGEKIG 122 Query: 126 KVVDMMETGSNDVLVIKANLKDAFGIKE---------RLVPFLDGQVIKKVDLTTRSIEV 176 VVD+ G ND+L ++ A K+ LVPF+ +++ VDL IE+ Sbjct: 123 VVVDIFWAG-NDILAVQLEANLASVKKKSPSSDSEARALVPFVK-EIVPLVDLKAARIEI 180 Query: 177 DWDPGF 182 PG Sbjct: 181 APPPGL 186 >UniRef50_A3HW20 RimM n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW20_9SPHI Length = 176 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 8/168 (4%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ-DMIIKL 74 LG + +G+RG + V T++ E D + F+++ + LE + ++ K Sbjct: 9 LGYVAKVHGLRGEVVVVLDTDNPEDYEDLEHLFLEQKSRLVPFFLEHFVLQPGNKVLAKF 68 Query: 75 KGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMETG 134 + D + A L E+ + + LP+LE+ YY+ +L+G +V +G V + + Sbjct: 69 EDYDSLNQAEELVGSEVYLPLTALPELEDDQYYFHELIGFEVFDETIGLIGTVQVVYDLE 128 Query: 135 SNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+L + KE L+P + +I++VD T + + G Sbjct: 129 TQDLLGVTHQ------GKEVLIP-IQDGIIQEVDKTAKKVFCHLPEGL 169 >UniRef50_C0ZXR9 Ribosome maturation factor rimM n=21 Tax=Actinomycetales RepID=RIMM_RHOE4 Length = 190 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 93/173 (53%), Gaps = 8/173 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQDM 70 +V+G++ S+GI+G L V T++ E F + + + +E+ + H+ + Sbjct: 3 LVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRESTLKSYTVEAARDHSGRL 62 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQL-PQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++L+GV DR A+ L V+DSS+L P + ++Y +L G +VV T+G ++G V++ Sbjct: 63 LLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGSVIE 122 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ + + ++L I+ + + E L+PF+ ++ V + + ++ G Sbjct: 123 VLHSAAGELLSIRRTGETSG---ELLIPFV-AAIVTSVSIADGVVMIEPPEGL 171 >UniRef50_B4WHU3 16S rRNA processing protein RimM n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WHU3_9SYNE Length = 229 Score = 155 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 50/219 (22%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAG-QWQQVQLESWKHHNQD- 69 D +++G++ ++G+ G ++V+ ++ E + +I+K G +QL S ++ Sbjct: 9 DWLLIGRIVGAHGLNGHIKVYPESDFPERFIEPGERWIEKPGANPTPIQLISGRYLEGKN 68 Query: 70 -MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT-EGYDLGKV 127 ++KL G+D RD A L+ ++VV + G+++ DL+G +V+ + +G + Sbjct: 69 IYLVKLAGIDFRDQAEDLSGAKLVVPVGDRLPVAPGEFHVSDLIGLRVILQSDQTAIGTI 128 Query: 128 VDMMETGSNDVLVIKANLKDAFGI------------------------------------ 151 ++ TG +D+L + ++ Sbjct: 129 TNVFTTG-HDLLEVSLPTAESTSDLDTASKRTEPERALSLESKHHPSLRSKAAQKLRRKA 187 Query: 152 --------KERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 K L+PF++ ++ VD+ +E+ G Sbjct: 188 RRAKKKQTKTLLIPFVE-DIVPVVDVLAGRVEITPPAGL 225 >UniRef50_C5CEB5 Ribosome maturation factor rimM n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=RIMM_KOSOT Length = 200 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 4/167 (2%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFI--QKAGQWQQVQLESWKHHNQ 68 I +GK+ +G+RG +++ S T + + + +KAG + ++++ + + Sbjct: 10 DSMIPVGKVVKPHGLRGEVKMKSLTNQLKVFETLKKVLLYDEKAGTVVRAEIDTIRRAGK 69 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 I+ KG +AA + + + LP L+EG+YY+ L+ C+V EG +GKV Sbjct: 70 GYIVHFKGFKSVEAAERIRGFYVYAPLNVLPPLKEGEYYFYQLLDCEVYDPEGEYIGKVT 129 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 D++ETG+NDV+V+ L D +E L+P + ++ + + I Sbjct: 130 DIIETGANDVIVVTKELPDFTVEEE-LIPVIKDYIV-EFRFKDKKIV 174 >UniRef50_Q6NGI4 Ribosome maturation factor rimM n=1 Tax=Corynebacterium diphtheriae RepID=RIMM_CORDI Length = 166 Score = 155 bits (393), Expect = 6e-37, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 10/170 (5%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQDMII 72 +++G++ S+GIRG + + +TE+ E F + G+ + + S + H +++ Sbjct: 3 LMIGRVVKSHGIRGEVAIEVTTEEPEIRFAQGEVLNGRQGGKEHSLTIASVRPHQNRLLV 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 K K + DR AA+ L L + +Y +L G V+ E +G+V ++ Sbjct: 63 KFKEIADRTAADSLRGTRFFAAP--LDDDVDDGFYDHELEGLAVIHGE-EKIGEVSGVIH 119 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +L + KE L+PF+ ++ +VDL + + G Sbjct: 120 GPAQSLLEVTLES-----GKEVLIPFVH-DIVPEVDLDAGTCVITPPEGL 163 >UniRef50_A1SLS4 Ribosome maturation factor rimM n=4 Tax=Actinomycetales RepID=RIMM_NOCSJ Length = 184 Score = 155 bits (392), Expect = 8e-37, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-----GQWQQVQLESWKHHNQ 68 +++G++G +GIRG L + T++ E F + + ++V + S + H Sbjct: 6 VLVGRIGKPHGIRGELTLDVRTDEPERRFAPGAVLRAEPPAGSASRLRRVTVRSARWHQS 65 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVD-SSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 +++ + V DR AA + + + +YY L+G G LG V Sbjct: 66 TLLVAFEEVADRTAAEAARGILLHATVPADAAPDDPDEYYDHQLVGLAAYDVSGAALGSV 125 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ G+ D+L ++ ++ LVPF+ ++ +VDL R + + PG Sbjct: 126 TGLVHGGAQDLLTVRTP-----DGRDALVPFVKA-LVPEVDLAGRRVVIADRPGL 174 >UniRef50_A7Z4M2 Ribosome maturation factor rimM n=62 Tax=Bacilli RepID=RIMM_BACA2 Length = 174 Score = 155 bits (392), Expect = 9e-37, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 9/170 (5%) Query: 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQ---PWFIQKAGQWQQVQLESWKHHNQDMII 72 +GK+ +++GI+G +RV S T+ AE + F + A + +V + + + H Q ++ Sbjct: 8 VGKIVNTHGIKGEVRVISKTDFAEERYKPGNTLYLFAEGAAEPIKVTVSAHRLHKQFHLL 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + K + + L N I V L +LEE ++Y+ +++GC+VV+ +G +G V +++ Sbjct: 68 QFKEMPSLNEVEHLRNMVIKVPEEDLGELEEDEFYFHEIIGCEVVSEDGELIGTVKEILT 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+NDV V+ G K+ L+P++ V+K +++ + I++ G Sbjct: 128 PGANDVWVVARK-----GKKDALIPYI-ASVVKDININEKKIKIHVMEGL 171 >UniRef50_A1ZGD2 16S rRNA processing protein RimM n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZGD2_9SPHI Length = 177 Score = 154 bits (391), Expect = 9e-37, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 85/172 (49%), Gaps = 6/172 (3%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D +G + +YG++G + +++E + + F+ K +E + + Sbjct: 4 EDCYEVGYIAKTYGVKGEIHAVFDVDNSEEYREIESIFVVKDRHMVPYFIEQVRFVQGYV 63 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 +K + +DD D A +L ++++ LP+ EE +YY+ D++G VV + ++GKV + Sbjct: 64 RLKFEEIDDVDQAKMLVGSKLMLPIDVLPETEEEEYYFHDILGYMVVDADKGEIGKVTQL 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ + D++ + KE L+P++ Q+I+K+D + I V G Sbjct: 124 YDSTNQDLIGVTHQ------GKEVLIPYIKDQIIQKLDHEQKVIVVTLPGGL 169 >UniRef50_B1LVU1 Ribosome maturation factor rimM n=8 Tax=Methylobacterium RepID=RIMM_METRJ Length = 231 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 13/176 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQ--- 68 + ++LG+ G ++G+ G +R+ S T D ++I Y + + L + Sbjct: 51 NLVLLGEFGRAHGLTGEVRLKSYTGDPQAIAGYGALQTSDG---RTLALADVRPAPGSSP 107 Query: 69 -DMIIKLKGVDDRDAANLLTNCEIVVDSSQL-PQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I ++KGV R AA L + V +L ++ + Y DL+G V G +G Sbjct: 108 DMLIARVKGVSGRSAAEALNRVALFVPRDRLAAPEDDDEVYAADLIGAAAVDEAGTLVGT 167 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +V + G D+L ++ G L+PF + +D+ R + V Sbjct: 168 IVAVPNYGGGDLLELRPPN----GGATALLPFTKA-FVPVLDVAQRRVTVAAPEDL 218 >UniRef50_C4FT38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT38_9FIRM Length = 177 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 8/176 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQV---QLESWKHH 66 + + ++ +++GIRG L++ + T+ E + +I K Q + Q+ H Sbjct: 1 MTYYRVARIVNTFGIRGQLKLIADTDFPEERFASGKTLYILKDLNSQPLASVQVAKAAIH 60 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I D+ + C + +D S+ +LEE YY L+G +VVT EG LGK Sbjct: 61 KGTWLISFVDYDNINQVEGFKGCWLAIDESEQEELEEDSYYHHQLLGLEVVTLEGKTLGK 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + ++++ GSNDV V++ N+ A K+ L+PF+ G V+K VDL ++V+ G Sbjct: 121 IKEILQLGSNDVFVVQRNIPKA---KDALIPFI-GDVVKTVDLEAGQVKVELMEGL 172 >UniRef50_Q7NKH3 Ribosome maturation factor rimM n=1 Tax=Gloeobacter violaceus RepID=RIMM_GLOVI Length = 181 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 11/174 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ---KAGQWQQVQLESWKHHNQD 69 + +GK+ ++ G+RG +RV +T+ AE + + G+ ++Q Sbjct: 4 WLEIGKVVAAQGLRGEVRVQPATDFAERLTRPGARLVGRSLDDGRVFRLQSGRAIPGKDL 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVV 128 + + +GV++R+AA L + + +++ P L G+++ DLMG +V + G +G+V Sbjct: 64 FVCRFEGVEERNAAEKLVGSTLWIGAAERPVLAAGEFWLPDLMGVRVFRQDTGEAIGEVS 123 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D M ND+LVI+ + G K +VPF+ ++ VDL IEV PG Sbjct: 124 D-MTRAGNDLLVIRLS-----GGKTVMVPFVHA-LVPVVDLEAGRIEVVAIPGL 170 >UniRef50_Q0F050 16S rRNA processing protein RimM n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F050_9PROT Length = 182 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHN 67 + +G + ++G++G L VFS T A++I Y W+I K A + + H Sbjct: 2 TAESLLHIGDILGAHGLKGALIVFSHTRPAQAIAGYSCWWIGKTAATAKAYPVRRCWQHG 61 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEG-YDLGK 126 + M+ +L+GV D D A L ++ V + + ++ +Y W++L+GC+V+ LG Sbjct: 62 KRMLAELEGVSDCDQAALFKKLKVWVPI-DVVETDDDEYLWEELIGCRVIKEGTLEPLGT 120 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V + E G+ D L+++ DA E L+PF++ V+ V+L I VD G Sbjct: 121 VTALEEYGAQDNLLVQTPD-DAAEPGEWLIPFIE-DVVTDVNLDDCVITVDLPEGM 174 >UniRef50_B6IP93 Ribosome maturation factor rimM n=2 Tax=Alphaproteobacteria RepID=RIMM_RHOCS Length = 201 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 9/171 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 IV+ ++ ++G+ G +++ S T D ++F Y P + ++ +L + Sbjct: 4 RIVVAQILGAHGVHGRVKLKSFTADETAVFGYAP--LTDESGRREFKLRRTGTGKDHFLA 61 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 ++ G+ ++AA+ L + ++ +LP +E ++Y DL+G VT + G + + Sbjct: 62 EVDGITGKEAADALRGTRLYIERDRLPAPEDEDEFYHADLIGLDTVTADDQPFGTIKAIY 121 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G+ D+L I+ K +PF + +++ + V+ F Sbjct: 122 DFGAGDMLEIRH-----VSEKTVFLPFTKA-CVPVIEIAAGRVVVEPPANF 166 >UniRef50_Q72DU2 Ribosome maturation factor rimM n=6 Tax=Desulfovibrio RepID=RIMM_DESVH Length = 176 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 10/172 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQDMI 71 I +G + +G++G + V + + +++ + V+++S + H + Sbjct: 6 FIEIGLLTRPHGLKGEVCVDYYADSPFLLE--GTVYLKAGRAAPRPVKVQSMRMHKGRPL 63 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYDLGKVVDM 130 + +GV+DR AA LL ++V LP+L+E + Y +L G VV G LG + + Sbjct: 64 VIFEGVNDRTAAELLRGHVMLVPEDTLPELDEDEVYLFELEGISVVIDESGEHLGVIERI 123 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ VI+ KE L P + +DL +R+ + PG Sbjct: 124 DTDAYQEIWVIRTPQ-----GKEVLFPAAAP-FVLDIDLDSRTARIAPPPGL 169 >UniRef50_C4IJE3 16S rRNA processing protein RimM n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IJE3_CLOBU Length = 166 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 12/167 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 +G++ +++GI+G ++V+ TED + + ++ + K +I Sbjct: 4 KLFKIGQIINTHGIKGEVKVYPLTEDVNKFKRLKTVLVGG----VEMNILGVKFQKDRVI 59 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K++G+D + A I + + P+L E YY DL C V T+G +LGK+ D++ Sbjct: 60 LKIEGIDTMNDAETYKQKYIEIPREKEPELPEDTYYVSDLKECIVYDTDGKELGKIFDVI 119 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 T +NDV IK KE L+P + ++ +D+ + I + Sbjct: 120 STRNNDVYWIKEP-------KELLIP-VLRDIVLSIDINEKKIVIRP 158 >UniRef50_Q4BZC6 RimM protein:PRC-barrel n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BZC6_CROWT Length = 190 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 12/180 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQD- 69 + +G + + G+RG L+V SST+ E + +++ + ++L S K Sbjct: 8 WLEIGTIVAPKGLRGELKVLSSTDFPERFKNPGKRWLKSPQNASLEPIELISGKPVAGKN 67 Query: 70 -MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKV 127 I++L+G+++R+ A L ++++ P+L E +Y+ L+ V G +G V Sbjct: 68 IYIVRLQGIENRNQAENLRGHKLLILDETPPKLSEEEYHVSQLIDLDVYDQNTGKMIGNV 127 Query: 128 VDMMETGSNDVLVIK-----ANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 VD+ G +D+L IK K+ VPF+ +++ VDL IE++ G Sbjct: 128 VDIFSAG-HDLLEIKLITDTETEVKHKKEKKVFVPFV-YEIVPVVDLEQHKIEINPPIGL 185 >UniRef50_D0WR63 16S rRNA processing protein RimM n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR63_9ACTO Length = 192 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 6/169 (3%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + + +G+ +G++G LR+ T+ E + + + + + + Sbjct: 3 LTVAVIGAPHGLKGELRLDVRTDQPERRLGIGAMLETDPQEAGPLTVARTREYKGAIYAM 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 DR A L ++ V++ + +EE +Y +L+G +V+ EGY+LG+++ + Sbjct: 63 FSECTDRTMAERLRGVKLTVETDEDDYVEEDAFYEHELVGLEVLDPEGYELGRIIGLETF 122 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D+LV++ D VPF+ +++ +VDL + V G Sbjct: 123 PAQDMLVVREPDGDVAR-----VPFVR-EIVTEVDLDDNCVVVRAPQGL 165 >UniRef50_C4XKL9 Probable 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKL9_DESMR Length = 184 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 13/181 (7%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ---KAGQWQQVQLESWKH 65 A I++G + +G+RG L V S + + G+ + + + + Sbjct: 2 AASKYIIVGVVARPHGVRGELVVDSHADSPTYFARGSTLRLSPPSDPGRGRDYVVRAARP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE----G 121 H ++I L V DR AA+ L I V + +L E + + DL G +V + Sbjct: 62 HQDRILITLDNVPDRTAADALRGLAICVPADRLVAAAEDEVFLHDLPGLRVRLADAAPTD 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 DLG + D+ + G ++ VI+ +E L P D + VDL + +D PG Sbjct: 122 PDLGVIEDVRDYGGPEIWVIRD-----AKGREILFPATD-DFVPDVDLDAGVVTIDPPPG 175 Query: 182 F 182 Sbjct: 176 L 176 >UniRef50_C0GQX6 16S rRNA processing protein RimM n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GQX6_9DELT Length = 178 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 7/175 (4%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHN 67 + D + GK+ +G++G + + + + + +++ G+ + ES + H Sbjct: 2 SAKDLLTCGKVVKPHGLKGEICIIWYADSPLLLKKAEKIYLRMPGKRPRAFTPESSREHG 61 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKV 127 ++++L+ + RD A EI+ DS LP+ ++ + Y +L+GC V G LG + Sbjct: 62 SRLLLQLEQITGRDQAEKWRGAEILADSKDLPRDDDNEIYLHELLGCSVFLDSGEYLGVL 121 Query: 128 VDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + +V I +E L P + + I +D + + G Sbjct: 122 QGFVPRKNGEVWEIVDE-----KGREILFPA-EDEFIVHLDPEAKKAVISPPGGL 170 >UniRef50_A3VQ83 Putative 16S rRNA processing protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQ83_9PROT Length = 187 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 7/175 (4%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 + +V+G+ +G+RG ++ S TE AE I Y P + ++ L K Sbjct: 1 MGKSPQDRMVVVGQFAGPHGVRGEFKLRSFTERAEDIVAYGPLYTEEGRILTASLLREVK 60 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 + + V + A ++ V LP +E +YY +DL+G +T G + Sbjct: 61 P--GLFLARAPEVKTPEEAAAFKGAKLSVPRRALPAPDEDEYYIEDLIGLTALTPSGEVV 118 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 G+V + + G+ ++ + L+PF D + VD + VD Sbjct: 119 GRVRQVADYGAGPIIELAPVSGKGA----LLLPF-DRTHVPTVDFGASRLIVDPP 168 >UniRef50_Q2LVU6 Ribosome maturation factor rimM n=1 Tax=Syntrophus aciditrophicus SB RepID=RIMM_SYNAS Length = 166 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQVQLESWKHHNQD 69 + +G++ S+G++G ++ S E+ E + ++ ++ + + ++ H Sbjct: 1 MKFFEIGEIVKSHGLKGRMKAKSYVENGEDLSSVHEAMIVKGKEEPRGYKVRKIVLHKTY 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++L+ +D ++A+ L +++ L +YYW+DLMG QVVT EG LG++ Sbjct: 61 FFLELETIDTVESADSLVGSTVLIPEDDRAALSGDEYYWRDLMGLQVVTEEGRFLGRIES 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + TGSNDV V A G +E L+P + VI K+DL + + V PG Sbjct: 121 IFPTGSNDVYVC------AGGSREILLPAI-SDVILKIDLDKKEMVVRLLPGL 166 >UniRef50_A0Q860 Ribosome maturation factor rimM n=18 Tax=Francisella RepID=RIMM_FRATN Length = 169 Score = 152 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 9/169 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLESWKHHNQD 69 D + + K+G++Y + G L ++ E++ Y W+IQ WQQ++ ES Sbjct: 4 DFVEIAKIGATYKLDGELNLYPLANSIETLISYGDWYIQLPATNVWQQLKGESVLKRADK 63 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + IKL ++D D A N I V LPQL E + Y+KDL+GC V G VVD Sbjct: 64 VYIKLANINDADTAKKYVNALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVD 123 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 ++ETG+N+VLV K + E L+P++ ++ + DL ++ I VDW Sbjct: 124 IIETGANEVLVCKEDNS------EYLIPYVKQYIVSE-DLNSKKIVVDW 165 >UniRef50_B8E2G5 16S rRNA processing protein RimM n=2 Tax=Dictyoglomus RepID=B8E2G5_DICTD Length = 166 Score = 152 bits (385), Expect = 6e-36, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 86/171 (50%), Gaps = 10/171 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ---WQQVQLESWKHHNQD 69 + + K+G +GI+G ++++ + +++ Q ++ +++ LE+ + HN+ Sbjct: 1 MVRIAKLGEPFGIKGGIKIWPFFDLIDTLKKGQKIYLSWGDTLLVRRELSLENIREHNKG 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I ++ R+ A + ++++ LP+L EG YY +MG V G LGKV + Sbjct: 61 YVIYFSEIETREDAEKIRGNWLLIEEEDLPKLPEGQYYTYQIMGLSVYEESGEYLGKVKE 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++ETGSNDV +++ ++ +P + ++ +++L I + Sbjct: 121 ILETGSNDVYIVEGE------DEDIYIPAIKDVIV-EINLDEGKIIIRKME 164 >UniRef50_Q1MQV0 Ribosome maturation factor rimM n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=RIMM_LAWIP Length = 173 Score = 152 bits (384), Expect = 6e-36, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 10/174 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQD 69 + +G + +GI+G +R+ T+ + F+QK+ ++ ++ S + H Sbjct: 3 EQLVAVGVLSRPHGIKGEIRLIRYTDSIDVFL--GEVFLQKSNSLPKKAEIISSRIHQGV 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVV-TTEGYDLGKVV 128 ++ KG DR A +L ++V S LP++E + Y DL+G VV +GK+ Sbjct: 61 ALVCFKGFSDRSAVEVLRGQTLLVSRSFLPEIESNESYLCDLLGFSVVLDNTDEVIGKLE 120 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + G ++ I KE L+P + + + +VD + I ++ G Sbjct: 121 YVSFPGGQELWSIITPE-----GKEVLLPAI-PEFVLEVDTNAQLIRINPPKGL 168 >UniRef50_B3DTN1 Ribosome maturation factor rimM n=19 Tax=Bifidobacteriaceae RepID=RIMM_BIFLD Length = 199 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + + ++G + G++G + V T+D E F+ + G+ + +E + I Sbjct: 9 ELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGET-EYIVEGSRTFKDRWI 67 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVVTTEGYDLG----- 125 +KL+GVDDR+AA L E+ ++ LE ++Y KDL+G + EG LG Sbjct: 68 LKLEGVDDRNAAEALNGVELYGEADDAEDMLEADEWYPKDLIGLEARLVEGNGLGLPAGQ 127 Query: 126 ---KVVDMMETGSNDVLVIKANLKDAFG---------IKERLVPFLDGQVIKKVDLTTRS 173 KVVD++++ + +L I+ G K LVPF++ ++ +DL + Sbjct: 128 VVGKVVDVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEA-LVPDIDLEEQY 186 Query: 174 IEVDWDPGF 182 + +D G Sbjct: 187 LTLDPPGGL 195 >UniRef50_D1NUF5 16S rRNA processing protein RimM n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUF5_9BIFI Length = 215 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 17/195 (8%) Query: 2 SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLE 61 S +D + + ++G + G++G + V S T++ E F+ K G+ Q +E Sbjct: 11 SNPNDDPQQMDLLRVARVGRAQGLKGEVTVQSFTDEPEYRFEPGSELYTKDGE-QTFVVE 69 Query: 62 SWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQ-LEEGDYYWKDLMGCQVV--- 117 + I+K +GVDDR AA + + ++ LEE +Y KDL+G +V Sbjct: 70 RSRSMKNRWILKFEGVDDRTAAEAINGTVLYGEADDAEDMLEEDVWYAKDLVGLEVRMAP 129 Query: 118 -----TTEGYDLGKVVDMMETGSNDVLVIK-----ANLKDAFGIKERLVPFLDGQVIKKV 167 E +GKVVD+++ G +L ++ + K LVPF++ Q++ ++ Sbjct: 130 DNLLGLEEDRLIGKVVDVID-GPQWLLKVRLAEPVRDADGVVVEKTALVPFVE-QIVTEI 187 Query: 168 DLTTRSIEVDWDPGF 182 D + ++ G Sbjct: 188 DPEQQVALINPPGGL 202 >UniRef50_C6XN47 16S rRNA processing protein RimM n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XN47_HIRBI Length = 193 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 93/178 (52%), Gaps = 8/178 (4%) Query: 3 KQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLES 62 + ++A +D +V+ ++G ++G+RG +RV S T AE F Y P + +S Sbjct: 2 RDEQSKASLDLVVVAQIGGAHGVRGHVRVRSFTVVAEDCFAYGPLLDENGD--VIFTAKS 59 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGY 122 ++ + ++ R+ + + V + LP+ EE ++Y++DL+G +VV +G Sbjct: 60 YQENKDGFVVWPVENRQREEWMAMKGVLLHVPRNALPEPEEDEFYFEDLIGSKVVHEDGR 119 Query: 123 DLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 +LG+V+++ G++D+L +K+ + ++PF ++I KVD+ + + + Sbjct: 120 ELGQVLNVHNFGADDLLELKSPHGT-----DYMLPFT-LEIIPKVDVKAQLLTAKPEE 171 >UniRef50_C5BWW9 16S rRNA processing protein RimM n=3 Tax=Actinomycetales RepID=C5BWW9_BEUC1 Length = 182 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 11/178 (6%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK 64 +++ D +VL ++G++ G+RG +R+ T+D E+ + + + Sbjct: 1 MSSTDQDDDVVLARLGAALGLRGEVRLTVRTDD-ENRLAPGTKVRTDPPAAGPLTIARLR 59 Query: 65 HHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDL 124 +I + DR AA L E+V + P++++ +Y ++L+G + VT +G+ L Sbjct: 60 RTGAGYVIAFAEIADRTAAEALRGVELVAE----PRVDDDAWYPRELVGLEAVTPDGHVL 115 Query: 125 GKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 G+VV + ++DVLV+ LVPF+ ++ VD+ + VD G Sbjct: 116 GEVVAVEHPPAHDVLVVVEPSGAHA-----LVPFVTA-LVPSVDVAAGRVVVDPPGGL 167 >UniRef50_C4LJC2 16S rRNA processing protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJC2_CORK4 Length = 215 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 35/214 (16%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKA-------- 52 M+K + + + +G++ +G+RG V +T+D E F Sbjct: 1 MTKHDNSADDPNYVQIGRVVKPHGVRGEFVVEPTTDDPEGRFAVGSVVKAMPVGGRQRRN 60 Query: 53 ---GQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWK 109 + + + S + H +I+K + + DR+AA L V + + ++Y Sbjct: 61 GGSQEPFTLTVASVRGHQGRIIMKAEEIPDRNAAESLRGVRFVAEP--VIDHSGDEFYDF 118 Query: 110 DLMGCQVVTT------------------EGYDLGKVVDMMETGSNDVLVIKANLKDAFGI 151 +L G V+T E D+G V +++ + +L ++ D Sbjct: 119 ELEGLHVLTVGPVSAEEAHARAYEGAQPEPEDIGIVKNVLRGPAQRLLEVEIESADTASD 178 Query: 152 ---KERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + L+PF+ ++ VD+ +I V G Sbjct: 179 GAPRTVLIPFVQA-IVPIVDIDNEAIVVTPPEGL 211 >UniRef50_C8X433 16S rRNA processing protein RimM n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X433_DESRD Length = 182 Score = 150 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESWKHHNQDMI 71 + +G++ G+RG + + + + ++Q + + + + S + H + Sbjct: 6 LVPIGRIAKPLGLRGEVCLEPHADFPFVFASLERIYLQFERRRPKPYAVLSHRVHKGRDV 65 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + L G++ RDAA + E++ + LP+ ++ +DL GC+V +G +G+V+++ Sbjct: 66 LLLHGIEGRDAAESIRGREVLARARDLPEPDDAVLLRQDLPGCRVELEDGAWVGEVLEVQ 125 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + DV VI +E L P + + VDL R + + G Sbjct: 126 DNRAQDVWVILGPQ-----GQEILFP-VCEAFVLDVDLERRVVVIRPPEGL 170 >UniRef50_C3RL40 Ribosome maturation factor rimM n=4 Tax=Bacteria RepID=C3RL40_9MOLU Length = 169 Score = 150 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 ++ + +GK+ ++G++G L++ S+++ A+ I+ Q ++ + + H + Sbjct: 1 MEKLKIGKIVGTHGLKGELKIRSNSDFADKRFKKGNEIIIRYQNQDLVYKIITSRIHKGN 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ + D + + L+ +Y++ DL+G QVV+TEG +G V Sbjct: 61 YLVSFRDNQDINLVEKYIGSFVYGYKDDEL-LDADEYFYTDLIGMQVVSTEGTKIGPVTS 119 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + +D+L I N K +P++D IK VD+ + I V G Sbjct: 120 IYDNTRHDILNIDHN------GKNVAIPYVDA-FIKDVDVEKKIIVVMLIKGL 165 >UniRef50_C2KRG1 16S rRNA processing protein RimM n=3 Tax=Mobiluncus RepID=C2KRG1_9ACTO Length = 196 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 76/184 (41%), Gaps = 20/184 (10%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + + +G + G+RG +RV T++ + F + + ++ ++ +H + + Sbjct: 2 KVTVATLGRASGVRGEIRVALRTDNPHTRFAPGAVLVTDHPDFPRLTVKQARHSGKHFVA 61 Query: 73 KLKGVDDRDAANLLTNCEIVV---DSSQLPQLE-----------EGDYYWKDLMGCQVVT 118 K + DRD A L ++V+ + P E +Y +L+G T Sbjct: 62 SFKEIPDRDTAETLGGVKLVIETDPEATNPPGPDETPGATESGSEDGFYRHELVGLSAQT 121 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDW 178 G LG V D++ + D+L + + L+PF+ +++ +VDL + + Sbjct: 122 QTGESLGMVSDLIIGTAQDLLEVTT-----ADGHKVLIPFVF-ELVPEVDLAAGRVVMAP 175 Query: 179 DPGF 182 G Sbjct: 176 PGGL 179 >UniRef50_Q0C668 Ribosome maturation factor rimM n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RIMM_HYPNA Length = 181 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 7/164 (4%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 I +G + ++G+RG +RV S T D +++F Y P + + + + I+ Sbjct: 10 LIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGK--VLLTPITARPGKDHFIV 67 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMME 132 + K ++ + L C + QLP+ +E ++Y++DL+G V T +V + Sbjct: 68 RPKENLQKEDWDALRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQN 127 Query: 133 TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 GS D+L I+ A VP + +D+ I + Sbjct: 128 FGSGDLLEIEIPGAPA----TIYVPLTRAD-VPVIDMAAHRIVI 166 >UniRef50_Q3A2E6 Ribosome maturation factor rimM n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RIMM_PELCD Length = 175 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 8/172 (4%) Query: 12 DPIVLGKMGSSYGIRGWLRVF-SSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 D ++LG + ++G+RG L++ S + +Q F+++ + + + Sbjct: 7 DLLILGVVIGTHGLRGDLKIRGSDQDFPLLSKMHQLVFLREGETVLKCARRKAGWYKGHL 66 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 ++++ G D A L CE+ V +P L G+YYW L G V LG + D+ Sbjct: 67 LLQIAGYRDVRAVQHLVGCEVAVRRDDVPGLPAGEYYWFQLKGMTAVDRRLGALGCLEDI 126 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 T ++D+ VI + E LVP + I VDL + I D G Sbjct: 127 FTTAAHDIYVINGDYG------EVLVPAVKA-FIADVDLESNRILFDLPDGL 171 >UniRef50_C7H4K9 16S rRNA processing protein RimM (Fragment) n=2 Tax=Faecalibacterium prausnitzii RepID=C7H4K9_9FIRM Length = 184 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHN 67 +A + GK+ +++G+RG +++ + + + G + ++ S + Sbjct: 5 KAMQKYLEAGKVVTTHGVRGEMKLELWCDGVAFLKKVGRLYTTPQGG-RCYKITSIRPQG 63 Query: 68 QDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGK 126 Q +++L+GV D DAA L D L G +Y DL+GC+V + G G Sbjct: 64 QMALLQLEGVSDMDAARALRGQVFYFDRDD-ATLPAGKWYVADLIGCEVRDADTGKVYGV 122 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V + G+ D+ +KA KE + P +D +K+ + + V PG Sbjct: 123 VTSVDHPGAQDIYTVKAPS-----GKEYMFPGVDA-FLKERNPPEGYLLVTPIPGL 172 >UniRef50_C2KW13 Possible 16S rRNA processing protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KW13_9FIRM Length = 174 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 83/176 (47%), Gaps = 16/176 (9%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-------WQQVQLESWKHH 66 + +G + +G++G ++VF +TE+ + +++ + + +++S + Sbjct: 5 LRVGTILKPHGLKGEMKVFPTTEEPRRFTQLKELILRRESKGLRDTSFSESRKIKSVRFQ 64 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + ++++L+G+D + A N +++ Q L + +++ D +G +V LG+ Sbjct: 65 GEFLLLQLEGIDSVEMAEKYRNVSLMIPREQALPLGDNEFFLGDYIGMEVYIEGKELLGE 124 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V +++ETG+N V ++ KE L+P + V+ ++ I + G Sbjct: 125 VKEVIETGANLVFSVEGKE------KEYLIPHIPP-VVYEI--KENRIAIHLMEGL 171 >UniRef50_Q1D6I3 Ribosome maturation factor rimM n=1 Tax=Myxococcus xanthus DK 1622 RepID=RIMM_MYXXD Length = 188 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ-KAGQWQQVQLESW 63 +TA +P + LG + ++G+RG + + + +E++ +++ +AG ++++LE+ Sbjct: 1 MTATSP--YLELGYVARAHGLRGEVAIRALDPASETLDTVDRIWVRTRAGVEREMRLEAL 58 Query: 64 KHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYD 123 + ++ I+ L+GV+ R+ A L ++ V L EG+++ DL+G V G Sbjct: 59 RPTPKEDIVVLEGVESRNDAEALVGAKVFVFREDLEPPAEGEFFQGDLVGLDAVDANGNA 118 Query: 124 LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 LG+V ++ TG LVI+ A G +E +VPF D + + VDL R I + Sbjct: 119 LGRVEEIWTTGEVPNLVIR-----ASGREELVVPFAD-EFVPTVDLEARRIVIHPPE 169 >UniRef50_D2L5F8 16S rRNA processing protein RimM n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5F8_9DELT Length = 197 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 13/181 (7%) Query: 9 APVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQ---KAGQWQQVQLESWKH 65 A I++G +G +GIRG L + S + + G+ + + + + Sbjct: 2 AADKYIIVGDVGRPHGIRGELGINSHADSPSYFARGALLRLSPPADPGRGKDYVVRAARP 61 Query: 66 HNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT----TEG 121 H +++ L GV DR+AA L + V S+L + G+ + +L+G +V Sbjct: 62 HQGRILVTLDGVSDRNAAEALRGLAVCVPVSKLDPPDPGEVFLHELLGLRVRLAGAQPAD 121 Query: 122 YDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 DLG + D+ ++G ++ +I+ +E L P D +++ +DL R +D PG Sbjct: 122 PDLGVLEDVRDSGGAELWIIRD-----AKGREILFPAAD-ELVPDLDLEARIAVIDPPPG 175 Query: 182 F 182 Sbjct: 176 L 176 >UniRef50_C5RHQ2 16S rRNA processing protein RimM n=2 Tax=Clostridium RepID=C5RHQ2_CLOCL Length = 164 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 10/169 (5%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + + +G + + +G++G +V T+D + FI+ ++ + K Q +I Sbjct: 3 EFLAVGIITNVHGLKGEFKVKPLTDDIRRFNKLKKVFIKG----KEYNVSWCKLQPQKVI 58 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 +K++G+D + A N + VD +L EG Y+ DL+GC VV G D G + D++ Sbjct: 59 VKVEGIDTVEEAMRYKNEYMQVDRENAIKLPEGRYFVADLIGCNVVDHNGKDEGVIKDVI 118 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 TGSNDV G ++ L+P +D V+ +D+ R I + Sbjct: 119 FTGSNDVYW-----SIREGREDLLIPVIDP-VVDTIDIEKRVITIQPVE 161 >UniRef50_B8G4R6 16S rRNA processing protein RimM n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4R6_CHLAD Length = 169 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 8/174 (4%) Query: 10 PVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQKAGQWQQVQLESWKHHNQ 68 D + +G +G+ +G+RG +++ S + E + + FI QV + H Sbjct: 1 MDDLLYIGVLGAPFGVRGQIKLHSISSHPEHLIRHLRTVFIGPKRIPHQVT-RLFLHKPG 59 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 +II+L+ V DRDAA+ L E+ + ++ L E ++++ DL+G VT G +G+V Sbjct: 60 LLIIQLQSVTDRDAASDLRGAEVYIAAADAAPLGEDEFFYHDLIGLAAVTDTGDLIGEVR 119 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 D++ETG+ ++ VI G + LVP + ++ +DL R + + G Sbjct: 120 DVLETGAGEIAVIAR-----RGRADALVPMVRDFIV-AIDLVERRLVIRPIDGL 167 >UniRef50_A9BF00 Ribosome maturation factor rimM n=1 Tax=Petrotoga mobilis SJ95 RepID=RIMM_PETMO Length = 185 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQV--QLESWKHHNQ 68 + I + K+ +S+G+ G +++ T + I + + + ++ K N+ Sbjct: 9 DNKISVAKIVNSHGVHGEVKIVPFTNVKDVITNLEEVLLYNTSTRNFFFSKVLQVKPLNK 68 Query: 69 DMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVV 128 ++ L+G+ D D A + E+ +D LP L +YYW +++ +V +G +GKV Sbjct: 69 FFVLNLRGIKDMDEAKKMIGYEVFIDKKDLPSLNSEEYYWYEILDSEVYYEDGEYVGKVE 128 Query: 129 DMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 ++++TG+NDV+ IK + KE L+P D +I ++ +SI V Sbjct: 129 EIIQTGANDVISIK----NLEDDKEVLIPMTDHYII-ELKKEDKSIIVKKIE 175 >UniRef50_Q1NJ48 16S rRNA processing protein RimM n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJ48_9DELT Length = 184 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 10/176 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQ-VQLESWKHHNQD 69 D + +G++ GI+G +++ + +Y + +L + + Sbjct: 12 DDLLAVGRVVKPQGIKGEIKIVPYSGRPADFREYHRLWPADGEAPGGGWELLATRESGGA 71 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +I +L G+ DRDAA L + + S LP G+ YW L G +G ++G VV Sbjct: 72 VIARLAGIADRDAAEALRGRPLAIRSRDLPPAPAGELYWHQLQGLPARDEQGREIGTVVG 131 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRS---IEVDWDPGF 182 ++ T + +VI +E LVP + + ++ + + PG Sbjct: 132 LLATPARPTMVIAD-----GAGREILVP-VHAEFMQYQPAAVGRAAFVLLTPPPGL 181 >UniRef50_A9SQK6 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SQK6_PHYPA Length = 200 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 90/182 (49%), Gaps = 11/182 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFD-YQPWFIQK----AGQWQQVQLESWKH 65 D + +G + ++G+ G LR+ SST+ E F+ +I+K +V+L + Sbjct: 1 DDFVEIGIVAETHGVYGELRIRSSTDFPEERFETPGTRWIKKMRMGKPSITEVELIEGRE 60 Query: 66 HNQD---MIIKLKGVDDRDAANLLTNCEIVVDSSQLP-QLEEGDYYWKDLMGCQVVTTEG 121 +++LKGVD + A+ +++ + + P LEE + Y DL+G VV E Sbjct: 61 TIGKQTSWLVRLKGVDTLEKASEFQGATMLIRADERPVSLEEDEDYIPDLLGMDVVIQET 120 Query: 122 YD-LGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP 180 + +G +VD+ +G++D+L ++ +PF+ +++ VD+++ +E+ Sbjct: 121 KETIGTIVDVHNSGASDLLRVQLTKPIRGKDVRIWIPFVK-EIVPVVDISSNRVEISPPD 179 Query: 181 GF 182 G Sbjct: 180 GL 181 >UniRef50_A7VUD1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUD1_9CLOT Length = 171 Score = 149 bits (377), Expect = 5e-35, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMII 72 + GK+ + G+RG +RV + AE++ + + ++ Q ++++ S + + I+ Sbjct: 5 YLEAGKITGTQGLRGEIRVDPWCDSAEALCRLKRLYFEEGKQ--ELKVVSARTQKRMAIL 62 Query: 73 KLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDMM 131 KL+GVD + A+LL N + +LE G Y+ +DL+G + V + G D G V D++ Sbjct: 63 KLEGVDSIEQADLLRNRVLYASRQDF-KLEPGRYFIQDLLGVKAVDADSGRDYGAVTDVL 121 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPG 181 +TG+NDV I + K L+P + VI ++ L + + G Sbjct: 122 KTGANDVYEITGD-----DGKAYLLPAIPMTVI-EIRLEEGLMRIRPIEG 165 >UniRef50_A2C552 Ribosome maturation factor rimM n=8 Tax=cellular organisms RepID=RIMM_PROM1 Length = 176 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 88/176 (50%), Gaps = 11/176 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ-WQQVQLESWKHHNQD 69 + +G++ + G+RG LR+ S++ E +IQK + +++L K Sbjct: 5 DKWMSIGEIVAPQGLRGDLRIKPSSDFPERFTKPGKRWIQKTDELPTEIKLTKGKLIPGK 64 Query: 70 --MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT-TEGYDLGK 126 ++ ++GV R +A + ++V+ P L + +Y++ DL+G + + +G Sbjct: 65 SIYVLSIEGVSTRSSAEEIIGWKLVIPIDSRPMLSKDEYHYHDLIGLEARSGPSKALIGY 124 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V D+++ G ND+L I+ K+ LVPF+ +++ ++++ + + ++ PG Sbjct: 125 VTDLIK-GGNDLLEIE-----LVEGKKVLVPFVK-EIVPEIEIKEKWLLINPPPGL 173 >UniRef50_A0L4Y7 Ribosome maturation factor rimM n=1 Tax=Magnetococcus sp. MC-1 RepID=RIMM_MAGSM Length = 177 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 11/183 (6%) Query: 5 LTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQ--WQQVQLES 62 ++ + + LG + ++G++G +RV S TE + IFD+ W++ Q Q+++L S Sbjct: 1 MSGTEEIRWVTLGYVMGAFGLKGEMRVRSLTERPDGIFDHPVWWLFNPKQKTRQEMRLGS 60 Query: 63 WKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDY---YWKDLMGCQVVTT 119 + H + ++ L GV R+A L EI V S LP + W DL+GCQVV Sbjct: 61 GRLHGKGVVATLAGVTTREAVQALFGTEIQVPRSMLPDGGDDPGVDGIWADLIGCQVVEV 120 Query: 120 EGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWD 179 +G +LG+VV+MM TG+NDVL+++ E+L+P+++ +V+ ++DL + I+V Sbjct: 121 DGTELGRVVEMMATGANDVLIVRG-----GPEGEKLLPYIE-EVVVELDLDRQIIKVKLM 174 Query: 180 PGF 182 G Sbjct: 175 EGM 177 >UniRef50_B0S046 Ribosome maturation factor rimM n=2 Tax=Finegoldia magna RepID=RIMM_FINM2 Length = 162 Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 87/172 (50%), Gaps = 10/172 (5%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDM 70 ++ I + ++ +++GI+G L++ T++ E + +++ + +V +++++ + + Sbjct: 1 MEYIAVAEVLNTHGIKGCLKMRPLTDNIERFDEDICYYL--GDKKVKVTIQNYRMYKGFL 58 Query: 71 IIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDM 130 I + +D + + +D +L++G +Y DL+G + G +G +VD+ Sbjct: 59 YIDFEEFNDINEVLGFKKQYLYIDEKDRYELKDGSFYIDDLIGLKAY-FNGEYIGDLVDV 117 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + SNDV VIK + KE ++P + + IKK+DL I+V G Sbjct: 118 ISIYSNDVYVIKNDE------KEFMIPAVK-EFIKKIDLENGLIDVVIIEGM 162 >UniRef50_Q1IMM5 Ribosome maturation factor rimM n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RIMM_ACIBL Length = 209 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 14/187 (7%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWF-IQKAGQWQQVQ 59 MS ++ D I + ++ + G G + T+ E + + + G+ ++++ Sbjct: 1 MSST-SSTNTDDFITIARIQKTQGRVGEVFSELFTDFPELFEQRHHLYVLPEKGERRELE 59 Query: 60 LESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTT 119 LE H +++K +G++ D A L E+ + QLEEG Y DL+GC++ Sbjct: 60 LEDHWFHKGGVVLKFQGIETIDDAEKLLRSEVQIPRQDRAQLEEGATYVSDLVGCELFEI 119 Query: 120 EG---YDLGKVVDM-METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIE 175 G +G V D+ G +LV+K G +E L+P+++ +K D + IE Sbjct: 120 HGSEARKVGVVADVDFSAGEAPLLVVK-------GDREHLIPYVES-FLKSTDFKAKRIE 171 Query: 176 VDWDPGF 182 + G Sbjct: 172 MVLPQGM 178 >UniRef50_A8SMU8 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMU8_9FIRM Length = 166 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 11/173 (6%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK-HHNQD 69 ++ I + K+ + +GI+G ++++S T + + ++I K V ++S K + Sbjct: 1 MEFIEVAKIINVHGIKGTVKIYSLTSNIDRFNADCIFYIDKK---IPVTIKSVKELSSDL 57 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 ++ D+ + N + ++ S L +L E +YY L+G V + +GK+ + Sbjct: 58 ALLTFNEYDNINQVLEFKNKGLFIEESNLLELPEDEYYIYKLIGVDVYDQDNKFIGKIKN 117 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 ++ T +NDV I N K+ +P + + IK VD+ ++V G Sbjct: 118 VLTTLANDVYDIDYN------GKDVYIPAVK-EFIKDVDIEKSIMKVSIIDGM 163 >UniRef50_A8IWD5 RimM-like protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IWD5_CHLRE Length = 181 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 12/178 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ--PWFIQKAGQWQQVQLESWKHHNQD- 69 + +G++ ++G+RG LRV ST+ F P + +++ + + + Sbjct: 5 YVEVGRVTGAHGVRGELRVEPSTDQPAKRFKAGSKPCWRPSWPDVGVLKMRAVRPLGKGE 64 Query: 70 --MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQL-EEGDYYWKDLMGCQVVTT-EGYDLG 125 ++ L V R A L + V +S L + ++Y D++GC V+ G +G Sbjct: 65 EAWLVALDEVGSRTQAEQLRGHLLYVAASDREALRDPDEFYVTDIIGCSVLDQASGRLVG 124 Query: 126 KVVDMME-TGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 +VVD+ G++D L I+ ++PF + +DL +R++EV G Sbjct: 125 QVVDVFSGMGTHDTL---RADIMNSRIRYCMIPFAKA-ICPVLDLKSRTLEVAPPEGL 178 >UniRef50_D1VUX0 16S rRNA processing protein RimM n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VUX0_9FIRM Length = 166 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 12/176 (6%) Query: 7 AQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHH 66 ++ D +G++ +++GI+G L+V T++ + + + ++ S ++ Sbjct: 1 MKSKNDLTCIGEIINTFGIKGELKVRPFTDNIKRYSKLDYILLGQNKD--SYEISSVRYD 58 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 + +KLKG DD + N + + +L +G +Y DL+G +V + LG Sbjct: 59 KGFVFLKLKGHDDINDVLKFKNSYLYIYDKDREKLPQGTFYVWDLIGKEVYNSNNEFLGI 118 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + + +NDV VIK +P + + +K + I D G Sbjct: 119 LEKIDSYPANDVFVIKNENFH------YYIPNVK-EFVKDI---GDVIIADPIEGM 164 >UniRef50_C7R321 16S rRNA processing protein RimM n=3 Tax=Micrococcineae RepID=C7R321_JONDD Length = 184 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 8/169 (4%) Query: 14 IVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIK 73 + +G +G ++G+ G + V +T+ + F + + + + H + Sbjct: 3 LKIGTIGKAHGLHGEVSVIVTTDVPQERFVPGHKIATQPADRGPLTVTRQRAHQDRWYVT 62 Query: 74 LKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMMET 133 + + DR A E+V++ E+ +Y +L G +V G +G+V + Sbjct: 63 FEEIPDRTVAESYRGVELVIEVD--HSDEDDAWYPHELEGLEVRRLSGARVGRVAGLEPL 120 Query: 134 GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + D L+I + G + +PFL + VD+ + +D G Sbjct: 121 PAQDALIIDED-----GGERVYLPFLK-IFVPTVDVAGGYVVIDPPGGL 163 >UniRef50_Q2N9Q5 Ribosome maturation factor rimM n=5 Tax=Sphingomonadales RepID=RIMM_ERYLH Length = 169 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 13 PIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWK-HHNQDMI 71 P+ L + ++G+RG +R+ E E++ + + + L+S + + I Sbjct: 6 PLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSF------NEGTLTLKSVRSDNKGGAI 59 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVDMM 131 + V R+ A L + V LP LEEG+YY+ DL+G VT G +GKV+D+ Sbjct: 60 ARFAEVQGREQAEKLRGTTLTVPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVH 119 Query: 132 ETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEV 176 G+ D++ I + G+K +VP V++ I + Sbjct: 120 NYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVE---WNGERIVI 161 >UniRef50_C8QYR2 16S rRNA processing protein RimM n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYR2_9DELT Length = 185 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 8/165 (4%) Query: 1 MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK--AGQWQQV 58 M T + + +G++ G++G L+V + F+ G Sbjct: 1 MRIIFTGARRGELVEIGRIVKPQGVKGELKVLPLAGAPLDFSGLEELFLLPASGGPPLAY 60 Query: 59 QLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVT 118 L + + ++I+L GVDDR+ A L + + + + +LP L D YW L G T Sbjct: 61 PLLAVRSQGGALVIRLAGVDDRNQAEALRDRVVALAAGELPPLAPDDIYWHQLAGLAAYT 120 Query: 119 TEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQV 163 EG +G V D M T ++ +LVI +E LVP + + Sbjct: 121 AEGRKVGLVTDFMLTAAHPLLVIVDEQ-----HREYLVP-VHPEF 159 >UniRef50_A4RXW7 Predicted protein n=3 Tax=Mamiellales RepID=A4RXW7_OSTLU Length = 235 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 24/200 (12%) Query: 6 TAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIF---DYQPWFIQKAGQWQQVQLES 62 A A I +G + ++ +RG +RV T+ E F G+ + V++ S Sbjct: 3 DASASESLIQVGAIVGAHSLRGEVRVKPMTDFIEERLMRTGSTLRFDAPPGEVRAVKVRS 62 Query: 63 WKHH----NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQL----------EEGDYYW 108 + D+I+KL G DDR+AA L + V S L + ++Y Sbjct: 63 GRWVTSKGRNDVIVKLAGCDDRNAAEALVGTRLFVLPSDREPLRKDEGAEGSDGDDEFYA 122 Query: 109 KDLMGCQVVTTE-GYDLGKVVDMME-TGSNDVLVIKANLKDAFGIKE----RLVPFLDGQ 162 ++L G +VV + G +G V D++ G+ D+L + D + VPF+ + Sbjct: 123 QELEGLRVVERDTGEVIGVVEDVVRGAGTQDLLKVAFIALDEETGIDAEYYVYVPFVK-E 181 Query: 163 VIKKVDLTTRSIEVDWDPGF 182 ++ VD T +E+ G Sbjct: 182 IVPLVDATNGFMEITPPGGL 201 >UniRef50_B3QXJ7 16S rRNA processing protein RimM n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXJ7_CHLT3 Length = 168 Score = 145 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 87/168 (51%), Gaps = 7/168 (4%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQK-AGQWQQVQLESWKHHNQD 69 ++ V+G++ S G++G ++V T+ ES + + +++ K +VQ+ + K H Sbjct: 1 MNLFVVGEILKSRGLKGEVKVRVITDFPESFLERKSYYLGKTERDAHKVQVLAAKIHKGF 60 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 + L GVD ++A+LL + VD SQL +++ Y +L+G V+ LG++VD Sbjct: 61 AFLLLDGVDSVESADLLKGQFLFVDESQLMRVKGDFAYLHELIGLAVLDENEKLLGRLVD 120 Query: 130 MMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD 177 + S DV I+ ++ L+P +D ++K VD+ + + V Sbjct: 121 LQHMPSCDVYEIET-----ADKQKVLIPAIDDFIVK-VDVENKRVTVR 162 >UniRef50_A6NV55 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NV55_9BACE Length = 167 Score = 145 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 87/172 (50%), Gaps = 13/172 (7%) Query: 12 DPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMI 71 + G++ +++G++G +++ + E + + +I Q V++ S + H +++ Sbjct: 4 KFLEAGQIVNTHGVQGEVKIVPWCDSPEFLCQFDVLYIDG----QPVRIRSSRVHKGNVL 59 Query: 72 IKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE-GYDLGKVVDM 130 L+GV D +AA L ++ +D + + +L +G ++ DLMG +V + LG++ D+ Sbjct: 60 ATLEGVSDVNAAMRLKGKKVSIDRTGV-ELPDGRHFLADLMGLEVRDADTDEVLGEIKDI 118 Query: 131 METGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 + +++V V+K G L+P +D + +K+ ++ I V G Sbjct: 119 LTPPAHEVYVVKG------GAHSYLIPAVD-EFLKETNVEGGYIRVHLIEGM 163 >UniRef50_A5USU0 Ribosome maturation factor rimM n=2 Tax=Roseiflexus RepID=RIMM_ROSS1 Length = 182 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 8 QAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY-QPWFIQKAGQWQQVQLESWKHH 66 + + +++GK+ ++G+RG +++ + T+ + + + + F+ + + +Q + Sbjct: 6 PSADEVLLIGKVIDAFGLRGEIKIRAITDQVDHLRRHVRTVFLGEERRPFTLQ-RVHEPK 64 Query: 67 NQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGK 126 +I+ L GV DR A L E+ + L++ +Y+ L G +V+ + G ++G Sbjct: 65 AGILILSLGGVTDRTTAEALRGAEVTIRECDAAPLDQDEYFIHQLYGLRVIESGGGEIGV 124 Query: 127 VVDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDPGF 182 V ++++TG+NDV+V++ G + L+P + V++++D+ I V PG Sbjct: 125 VREVVQTGANDVIVVERQ-----GRSDTLLPMIH-DVVERLDVAAGQIVVRLLPGL 174 >UniRef50_D2MLY7 16S rRNA processing protein RimM n=1 Tax=Bulleidia extructa W1219 RepID=D2MLY7_9FIRM Length = 165 Score = 145 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 81/173 (46%), Gaps = 13/173 (7%) Query: 11 VDPIVLGKMGSSYGIRGWLRVFSSTEDAE-SIFDYQPWFIQKAGQWQQVQLESWKHHNQD 69 + I +G + +++GI+G L+V S T+ + ++ + + + S + + Sbjct: 1 MKKIQVGWIQNTHGIKGELKVRSETDFPNIHFKKGKKLYLDDQKE---LLISSSRLQKEM 57 Query: 70 MIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVVD 129 +++ G D + + +D + L++G+YY L+G V++ +G +G ++ Sbjct: 58 YLLQFVGYQDINLVQDWKGKGLYIDQNDQVHLKKGEYYRHQLIGLSVISEKGSLVGTILA 117 Query: 130 MMET-GSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVD-WDP 180 + ET G+ + L ++ KE L PF+ I +VD R + V+ W+ Sbjct: 118 VEETLGAQNNLRVETE------KKEVLYPFI-PSFIDRVDQEERKVYVNRWEE 163 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.178 0.531 Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,441,535,959 Number of Sequences: 3077464 Number of extensions: 73478675 Number of successful extensions: 166168 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 946 Number of HSP's successfully gapped in prelim test: 199 Number of HSP's that attempted gapping in prelim test: 162945 Number of HSP's gapped (non-prelim): 1171 length of query: 182 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 61 effective length of database: 668,023,212 effective search space: 40749415932 effective search space used: 40749415932 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 90 (38.9 bits)