16/01/2012 16:57:06 : INFO  : Run start: Mon Jan 16 16:57:06 GMT 2012
16/01/2012 16:57:06 : INFO  : Initialised job
16/01/2012 16:57:07 : INFO  : Renaming log file 'phyre2_20120116_165706.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/536f460d5c62b698/phyre_20120116_165706.log'
16/01/2012 16:57:07 : INFO  : Initialised job:
Sequence
>batch____
MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHE
QGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTD
AFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFE
IETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPT
TMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPN
AKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLIPLVEAQPRAEWHQLVADLQREFPCP
IPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMG
FGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQ
QSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRI
DAEEKVYPMVPPGAANTEMVGE

16/01/2012 16:57:07 : INFO  : Checked sequence
16/01/2012 16:57:07 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 16:57:07 : INFO  : PSI-BLAST 3 iterations
16/01/2012 17:01:10 : INFO  : PSI-BLAST 5 iterations
16/01/2012 17:04:50 : INFO  : Finished PSI-BLAST
16/01/2012 17:04:50 : INFO  : Running Buildali to generate a3m file
16/01/2012 17:31:39 : INFO  : Converting to HMM
16/01/2012 17:31:46 : INFO  : Calibrating HMM
16/01/2012 17:31:59 : INFO  : Searching HMM database
16/01/2012 17:43:29 : INFO  : Finished buildali
16/01/2012 17:43:29 : INFO  : Predicting secondary structure
16/01/2012 17:43:30 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 17:43:30 : INFO  : Predicting Disordered regions
16/01/2012 17:43:30 : INFO  : Predicted Disorder (Disopred)
16/01/2012 17:43:30 : INFO  : Running memsat_svm check
16/01/2012 17:47:06 : INFO  : Globular protein
16/01/2012 17:47:06 : INFO  : Predicted Transmembrane (memsat_svm) ID '536f460d5c62b698'
16/01/2012 17:47:06 : INFO  : Initialising fold library search
16/01/2012 17:47:06 : INFO  : Initialised search input
16/01/2012 17:47:06 : INFO  : Building Ensemble models
16/01/2012 17:47:06 : INFO  : Building hh.c1yi1A_.model.1.pdb
16/01/2012 17:47:07 : INFO  : Building hh.c1t9dB_.model.2.pdb
16/01/2012 17:47:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/536f460d5c62b698/hh.c1t9dB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/536f460d5c62b698/c1t9dB_.3.pdb
16/01/2012 17:47:07 : INFO  : Building hh.c1jscA_.model.3.pdb
16/01/2012 17:47:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/536f460d5c62b698/hh.c1jscA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/536f460d5c62b698/c1jscA_.8.pdb
16/01/2012 17:47:08 : INFO  : Building c1yi1A_.1.pdb
16/01/2012 17:47:09 : INFO  : Building c1powA_.2.pdb
16/01/2012 17:47:09 : INFO  : Building c1t9dB_.3.pdb
16/01/2012 17:47:11 : INFO  : Building c2djiA_.4.pdb
16/01/2012 17:47:12 : INFO  : Building c2panF_.5.pdb
16/01/2012 17:47:13 : INFO  : Building c2pgnA_.6.pdb
16/01/2012 17:47:14 : INFO  : Building c3eyaE_.7.pdb
16/01/2012 17:47:15 : INFO  : Building c1jscA_.8.pdb
16/01/2012 17:47:16 : INFO  : Building c1ozhD_.9.pdb
16/01/2012 17:47:17 : INFO  : Building c2ag1A_.10.pdb
16/01/2012 17:47:17 : INFO  : Building c2q27B_.11.pdb
16/01/2012 17:47:18 : INFO  : Building c2v3wC_.12.pdb
16/01/2012 17:47:19 : INFO  : Building c1zpdA_.13.pdb
16/01/2012 17:47:19 : INFO  : Building c2ji6B_.14.pdb
16/01/2012 17:47:20 : INFO  : Building c2x7jA_.15.pdb
16/01/2012 17:47:21 : INFO  : Building c2vbiF_.16.pdb
16/01/2012 17:47:21 : INFO  : Building c1upaC_.17.pdb
16/01/2012 17:47:22 : INFO  : Building c2vbgB_.18.pdb
16/01/2012 17:47:23 : INFO  : Building c2jlaD_.19.pdb
16/01/2012 17:47:23 : INFO  : Building c1ovmC_.20.pdb
16/01/2012 17:47:36 : INFO  : Finished HH model building
16/01/2012 17:47:36 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 17:47:42 : INFO  : html domain output complete ID '536f460d5c62b698'
16/01/2012 23:25:26 : INFO  : Run end  : Mon Jan 16 23:25:26 GMT 2012
