BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (70 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 104 9e-22 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 99 3e-20 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 96 5e-19 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 50 3e-05 UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 41 0.014 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 39 0.048 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 38 0.078 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 104 bits (259), Expect = 9e-22, Method: Composition-based stats. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 99.4 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 95.5 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 60 GVDDQCKEHKE 70 GV+ Q K +E Sbjct: 61 GVEYQRKLREE 71 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 5 FLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV-VGVDD 63 + L EE +++L+ L+ R V R+ I+R+AV +YL + G G + GVD Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 64 QCKEHKE 70 + + +E Sbjct: 61 ENQLREE 67 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE-VV 59 M+ + + LS+ + L + + R+AI+R+A++ Y+ + + G K V Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 60 GVDDQCKEHKE 70 G+ Q + E Sbjct: 61 GLAYQEELRSE 71 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 38.9 bits (89), Expect = 0.048, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 M + + LS + L ++ + S + I+R+A++ Y+ +Q + G KG Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 VDDQCKEHKE 70 V DQ E Sbjct: 111 VVDQEDLRSE 120 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 38.1 bits (87), Expect = 0.078, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ-KGEVVGV 61 + +S+ I+ L+ L SR+A++R A++ YL+R G K +V G+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 62 DDQCKEHKE 70 Q K E Sbjct: 62 AYQEKARSE 70 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 100 1e-20 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 95 6e-19 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 90 2e-17 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 90 3e-17 Sequences not found previously or not previously below threshold: UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 49 5e-05 UniRef50_B8GTR7 Putative transcriptional regulator, CopG family ... 47 1e-04 UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitroco... 44 0.001 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 42 0.005 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 42 0.006 UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythro... 40 0.029 UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphing... 38 0.076 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 95.1 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 5 FLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV-VGVDD 63 + L EE +++L+ L+ R V R+ I+R+AV +YL + G G + GVD Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 64 QCKEHKE 70 + + +E Sbjct: 61 ENQLREE 67 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 89.7 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 60 GVDDQCKEHKE 70 GV+ Q K +E Sbjct: 61 GVEYQRKLREE 71 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M+ + + LS+ + L + + R+AI+R+A++ Y+ + + G K V Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 60 GVDDQCKEHKE 70 G+ Q + E Sbjct: 61 GLAYQEELRSE 71 >UniRef50_B8GTR7 Putative transcriptional regulator, CopG family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTR7_THISH Length = 73 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKA-KGGRQKGEVVGV 61 + L +E ++ + L K+S++ +R AV YL + P +++ G +G G+ Sbjct: 2 RTVVDLPDEELQAIKALAKREKISQAEAIRRAVRAYLHARPAPDKESPAFGLWEGREEGI 61 Query: 62 DDQCKEHKE 70 Q E Sbjct: 62 QYQDTLRDE 70 >UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BM79_9GAMM Length = 72 Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVGVD 62 + L E+ ++ + L ++S++ +R AV YL+ + G G+ Sbjct: 2 RTIVDLPEKELQAIKALAKRERISQAEAVRRAVRHYLDTHPPQPTEEAFGVWANRCDGLS 61 Query: 63 DQCKEHKE 70 Q +E Sbjct: 62 YQEALRQE 69 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ-KGEVVGV 61 + +S+ I+ L+ L SR+A++R A++ YL+R G K +V G+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 62 DDQCKEHKE 70 Q K E Sbjct: 62 AYQEKARSE 70 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 M + + LS + L ++ + S + I+R+A++ Y+ +Q + G KG Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 VDDQCKEHKE 70 V DQ E Sbjct: 111 VVDQEDLRSE 120 >UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NCL5_ERYLH Length = 71 Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 M+ + + L ++ I+ L+ + SR+A +REAV YL RQ A+G + Sbjct: 1 MSRILIDLPDDDIRSLDAMARANGRSRAAEMREAVALYLRRQADGNWIAQGSGYWADKDA 60 Query: 61 VD 62 D Sbjct: 61 AD 62 >UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G928_NOVAD Length = 82 Score = 38.1 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLER--QQFPVRKAKGGRQKGEV 58 M + L +E I++L+ SR+A++REAV+ +L + G Sbjct: 1 MTRILADLPDEDIEKLDARAAALGKSRAALVREAVKLFLVQGSSSNDWIDRFAGLWAERD 60 Query: 59 ---VGVDDQCKEHKE 70 V Q ++ Sbjct: 61 DIPDSVAYQRAIRED 75 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 90 2e-17 UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitroco... 85 7e-16 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 82 4e-15 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 82 4e-15 UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 82 7e-15 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 80 2e-14 UniRef50_B8GTR7 Putative transcriptional regulator, CopG family ... 76 4e-13 Sequences not found previously or not previously below threshold: UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 57 2e-07 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 56 3e-07 UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted... 52 8e-06 UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synecho... 48 9e-05 UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia c... 47 2e-04 UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n... 44 0.001 UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythro... 43 0.003 UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphing... 43 0.003 UniRef50_D2RG21 Putative transcriptional regulator, CopG family ... 42 0.007 UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholde... 42 0.009 UniRef50_D2ML47 Putative uncharacterized protein n=1 Tax=Candida... 38 0.074 UniRef50_A8ZVF9 CopG domain protein DNA-binding domain protein n... 38 0.083 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BM79_9GAMM Length = 72 Score = 85.1 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVGVD 62 + L E+ ++ + L ++S++ +R AV YL+ + G G+ Sbjct: 2 RTIVDLPEKELQAIKALAKRERISQAEAVRRAVRHYLDTHPPQPTEEAFGVWANRCDGLS 61 Query: 63 DQCKEHKE 70 Q +E Sbjct: 62 YQEALRQE 69 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 5 FLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV-VGVDD 63 + L EE +++L+ L+ R V R+ I+R+AV +YL + G G + GVD Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 64 QCKEHKE 70 + + +E Sbjct: 61 ENQLREE 67 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE-VV 59 M+ + + LS+ + L + + R+AI+R+A++ Y+ + + G K V Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 60 GVDDQCKEHKE 70 G+ Q + E Sbjct: 61 GLAYQEELRSE 71 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 80.5 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 60 GVDDQCKEHKE 70 GV+ Q K +E Sbjct: 61 GVEYQRKLREE 71 >UniRef50_B8GTR7 Putative transcriptional regulator, CopG family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTR7_THISH Length = 73 Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKA-KGGRQKGEVVGV 61 + L +E ++ + L K+S++ +R AV YL + P +++ G +G G+ Sbjct: 2 RTVVDLPDEELQAIKALAKREKISQAEAIRRAVRAYLHARPAPDKESPAFGLWEGREEGI 61 Query: 62 DDQCKEHKE 70 Q E Sbjct: 62 QYQDTLRDE 70 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 M + + LS + L ++ + S + I+R+A++ Y+ +Q + G KG Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 VDDQCKEHKE 70 V DQ E Sbjct: 111 VVDQEDLRSE 120 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ-KGEVVGV 61 + +S+ I+ L+ L SR+A++R A++ YL+R G K +V G+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 62 DDQCKEHKE 70 Q K E Sbjct: 62 AYQEKARSE 70 >UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted fever group RepID=C4K0X2_RICPU Length = 74 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVR--KAKGGRQKGE-VV 59 +++++ IK L+KL K+SR I+ +A+ Y+ + + G K + + Sbjct: 2 RTIINIADSQIKILDKLSK-NKISRDKIIGQALTSYIASNDHNNKAFENAFGLWKDKNLD 60 Query: 60 GVDDQCKEHKE 70 V+ Q K E Sbjct: 61 SVEYQAKLCNE 71 >UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synechococcus RepID=Q7U9N9_SYNPX Length = 82 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE-VVGV 61 + L E+ L+ R +SR+A +REA+ +L+ Q P G + + Sbjct: 12 RTIIDLPEDERAVLDAHCRQRGLSRAAAIREALHLWLQ-HQHPRSADVFGLWRDRNADAL 70 Query: 62 DDQCKEHKE 70 + + +E Sbjct: 71 TLESELRQE 79 >UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N9W7_PHOLL Length = 76 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 1 MNTVFLHLSEEAIKRLNKLRG-WRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EV 58 M + ++L EE IK+ + SR+ R AV+ YL+ + G ++ Sbjct: 4 MVEININLLEETIKKREIVEKCSPDKSRATQSRRAVDTYLDANIPEQNNSVFGLWGDKKL 63 Query: 59 VGVDDQCKEHKE 70 G+ Q K +E Sbjct: 64 DGLKYQGKLREE 75 >UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IY13_METNO Length = 72 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 4 VFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQ-QFPVRKAKGGRQKGE-VVGV 61 + + E + L+++ SR A++R + ++ + P ++ G + V G+ Sbjct: 3 TTIEILPEQAEALDQIAAREHTSRDALVRTLIADFVAQHAPKPDIQSFFGIWRERGVDGL 62 Query: 62 DDQCKEHKE 70 + Q + E Sbjct: 63 EYQERLRAE 71 >UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NCL5_ERYLH Length = 71 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQ 42 M+ + + L ++ I+ L+ + SR+A +REAV YL RQ Sbjct: 1 MSRILIDLPDDDIRSLDAMARANGRSRAAEMREAVALYLRRQ 42 >UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G928_NOVAD Length = 82 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLE--RQQFPVRKAKGGRQKGEV 58 M + L +E I++L+ SR+A++REAV+ +L G Sbjct: 1 MTRILADLPDEDIEKLDARAAALGKSRAALVREAVKLFLVQGSSSNDWIDRFAGLWAERD 60 Query: 59 ---VGVDDQCKEHKE 70 V Q ++ Sbjct: 61 DIPDSVAYQRAIRED 75 >UniRef50_D2RG21 Putative transcriptional regulator, CopG family n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RG21_ARCPR Length = 126 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQF 44 M + + E+ K L+ L VSRS ++REA+ YL Sbjct: 1 MRRFGVSIPEDLAKALDDLAEKLGVSRSEVVREALRTYLAEHTH 44 >UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholderia multivorans RepID=B9B6V1_9BURK Length = 81 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVV- 59 M + ++L + L ++ + A++R+A+ +++ R G + Sbjct: 1 MRRISINLPATVVAELTRIAESEHRALDAVIRDAIGRHVARIGEARSTDVFGLWRHRARC 60 Query: 60 GVDDQCKEHKE 70 G+D Q + Sbjct: 61 GIDYQRDARAD 71 >UniRef50_D2ML47 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML47_9BACT Length = 81 Score = 38.5 bits (88), Expect = 0.074, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQ-------FPVRKAKGGR 53 M+ + L +E L + ++V S ++R AV +Y ER + + G Sbjct: 1 MSRTIVSLPDEDKTWLARQASAQRVPMSELVRRAVREYRERHGNGKSERLSELLDSTRGS 60 Query: 54 QKGEVVGVDDQCKEHKE 70 K G+ Q KE Sbjct: 61 WK-HGDGLRYQSNTRKE 76 >UniRef50_A8ZVF9 CopG domain protein DNA-binding domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVF9_DESOH Length = 77 Score = 38.1 bits (87), Expect = 0.083, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLER----QQFPVRKAKGGRQKG 56 M ++L+E+ +LN + ++S ++REA++ + + + V + G K Sbjct: 1 MIRTQIYLTEKQRNQLNAIAKVAGKNQSELIREAIDNLIGKTGGGHRASVLRQAAGIWKD 60 Query: 57 EVVGVDDQCKEHKE 70 D +E Sbjct: 61 RTDLPDF-DALREE 73 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.135 0.328 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 283,535,361 Number of Sequences: 3077464 Number of extensions: 6592172 Number of successful extensions: 28116 Number of sequences better than 1.0e-01: 28 Number of HSP's better than 0.1 without gapping: 32 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 28071 Number of HSP's gapped (non-prelim): 49 length of query: 70 length of database: 1,040,396,356 effective HSP length: 42 effective length of query: 28 effective length of database: 911,142,868 effective search space: 25512000304 effective search space used: 25512000304 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (38.1 bits)