BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (70 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 143 2e-33 UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 119 2e-26 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 42 0.005 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG 56 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQG 56 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 108 6e-23 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 107 1e-22 Sequences not found previously or not previously below threshold: UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 52 4e-06 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 52.3 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 60 GVDDQCKEHKE 70 GV+ Q K +E Sbjct: 61 GVEYQRKLREE 71 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 104 9e-22 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 99 3e-20 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 96 5e-19 Sequences not found previously or not previously below threshold: UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 50 3e-05 UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 41 0.014 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 39 0.048 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 38 0.078 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 104 bits (259), Expect = 9e-22, Method: Composition-based stats. Identities = 62/70 (88%), Positives = 64/70 (91%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE G Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEEDG 71 Query: 61 VDDQCKEHKE 70 V+ Q K +E Sbjct: 72 VEYQRKLREE 81 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 99.4 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 Query: 61 VDDQCKEHKE 70 VDDQCKEHKE Sbjct: 61 VDDQCKEHKE 70 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 95.5 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 60 GVDDQCKEHKE 70 GV+ Q K +E Sbjct: 61 GVEYQRKLREE 71 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 5 FLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEV-VGVDD 63 + L EE +++L+ L+ R V R+ I+R+AV +YL + G G + GVD Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 64 QCKEHKE 70 + + +E Sbjct: 61 ENQLREE 67 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGE-VV 59 M+ + + LS+ + L + + R+AI+R+A++ Y+ + + G K V Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 60 GVDDQCKEHKE 70 G+ Q + E Sbjct: 61 GLAYQEELRSE 71 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 38.9 bits (89), Expect = 0.048, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKGEVVG 60 M + + LS + L ++ + S + I+R+A++ Y+ +Q + G KG Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 VDDQCKEHKE 70 V DQ E Sbjct: 111 VVDQEDLRSE 120 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 38.1 bits (87), Expect = 0.078, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 TVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQ-KGEVVGV 61 + +S+ I+ L+ L SR+A++R A++ YL+R G K +V G+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 62 DDQCKEHKE 70 Q K E Sbjct: 62 AYQEKARSE 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.134 0.341 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,490,909 Number of Sequences: 3077464 Number of extensions: 7774935 Number of successful extensions: 25972 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 25959 Number of HSP's gapped (non-prelim): 15 length of query: 70 length of database: 1,040,396,356 effective HSP length: 42 effective length of query: 28 effective length of database: 911,142,868 effective search space: 25512000304 effective search space used: 25512000304 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 87 (38.2 bits)