Secondary structure and disorder prediction

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Sequence		M	M	Q	H	Q	V	N	V	S	A	R	F	N	P	E	T	L	E	R	V	L	R	V	V	R	H	R	G	F	H	V	C	S	M	N	M	A	A	A	S	D	A	Q	N	I	N	I	E	L	T	V	A	S	P	R	S	V	D	L	L
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Sequence		F	S	Q	L	N	K	L	V	D	V	A	H	V	A	I	C	Q	S	T	T	T	S	Q	Q	I	R	A
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pc6 chain C Region: 2 - 85 Aligned: 84 Modelled: 83 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea Phyre2 PDB 2fgc chain A Region: 1 - 85 Aligned: 85 Modelled: 84 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima Phyre2 PDB 2f1f chain A Region: 2 - 85 Aligned: 84 Modelled: 84 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli Phyre2 PDB 2fgc chain A domain 2 Region: 1 - 77 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 19% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 2 Region: 3 - 74 Aligned: 72 Modelled: 72 Confidence: 99.9% Identity: 24% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f1f chain A domain 1 Region: 3 - 74 Aligned: 72 Modelled: 72 Confidence: 99.9% Identity: 24% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f06 chain A domain 2 Region: 2 - 63 Aligned: 61 Modelled: 62 Confidence: 99.7% Identity: 11% Fold: Ferredoxin-like Superfamily: ACT-like Family: BT0572-like Phyre2 PDB 1sc6 chain A domain 3 Region: 4 - 76 Aligned: 72 Modelled: 73 Confidence: 99.4% Identity: 6% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1ygy chain A domain 3 Region: 4 - 77 Aligned: 73 Modelled: 74 Confidence: 99.3% Identity: 11% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 2f06 chain B Region: 2 - 79 Aligned: 77 Modelled: 78 Confidence: 99.3% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron Phyre2 PDB 3ibw chain A Region: 5 - 78 Aligned: 74 Modelled: 74 Confidence: 99.1% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 1ygy chain A Region: 4 - 76 Aligned: 73 Modelled: 73 Confidence: 98.4% Identity: 11% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 1u8s chain A domain 2 Region: 5 - 76 Aligned: 72 Modelled: 72 Confidence: 98.2% Identity: 18% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1y7p chain B Region: 2 - 78 Aligned: 76 Modelled: 77 Confidence: 98.0% Identity: 8% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator Phyre2 PDB 1zpv chain A domain 1 Region: 3 - 67 Aligned: 65 Modelled: 65 Confidence: 97.9% Identity: 6% Fold: Ferredoxin-like Superfamily: ACT-like Family: SP0238-like Phyre2 PDB 2qmw chain A domain 2 Region: 5 - 73 Aligned: 69 Modelled: 67 Confidence: 97.8% Identity: 10% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phenylalanine metabolism regulatory domain Phyre2 PDB 2nyi chain B Region: 3 - 75 Aligned: 73 Modelled: 73 Confidence: 97.8% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria Phyre2 PDB 1u8s chain A domain 1 Region: 3 - 67 Aligned: 63 Modelled: 65 Confidence: 97.7% Identity: 16% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1yba chain C Region: 1 - 76 Aligned: 75 Modelled: 76 Confidence: 97.7% Identity: 7% PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase Phyre2 PDB 3n0v chain D Region: 3 - 67 Aligned: 65 Modelled: 65 Confidence: 97.6% Identity: 11% PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution Phyre2 1 c2pc6C_ 2 c2fgcA_ 3 c2f1fA_ 4 d2fgca2 5 d2pc6a2 6 d2f1fa1 7 d2f06a2 8 d1sc6a3 9 d1ygya3 10 c2f06B_ 11 c3ibwA_ 12 c1ygyA_ 13 d1u8sa2 14 c1y7pB_ 15 d1zpva1 16 d2qmwa2 17 c2nyiB_ 18 d1u8sa1 19 c1ybaC_ 20 c3n0vD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2pc6C_ 100.0 20 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 2 c2fgcA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 3 c2f1fA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 4 d2fgca2 100.0 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 5 d2pc6a2 99.9 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 6 d2f1fa1 99.9 24 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 7 d2f06a2 99.7 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 8 d1sc6a3 99.4 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 9 d1ygya3 99.3 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 10 c2f06B_ 99.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 11 c3ibwA_ 99.1 12 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 12 c1ygyA_ 98.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 13 d1u8sa2 98.2 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 14 c1y7pB_ 98.0 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 15 d1zpva1 97.9 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 16 d2qmwa2 97.8 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 17 c2nyiB_ 97.8 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 18 d1u8sa1 97.7 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 19 c1ybaC_ 97.7 7 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 20 c3n0vD_ 97.6 11 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 21 c1u8sB_ not modelled 97.6 17 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 22 c3o1lB_ not modelled 97.5 3 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 23 c3louB_ not modelled 97.5 11 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 24 c3mwbA_ not modelled 97.5 13 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 25 c2qmwA_ not modelled 97.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 26 c3k5pA_ not modelled 97.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 27 c2qmxB_ not modelled 97.3 13 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 28 c3luyA_ not modelled 97.3 14 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 29 c3nrbD_ not modelled 97.2 15 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 30 d1phza1 not modelled 97.2 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 31 d2f06a1 not modelled 97.2 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 32 c3obiC_ not modelled 96.9 8 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 33 c3mtjA_ not modelled 96.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 34 c2dtjA_ not modelled 95.7 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 35 d2hmfa3 not modelled 95.2 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 36 d2cdqa2 not modelled 94.1 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 37 d2hmfa2 not modelled 94.0 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 38 c2re1A_ not modelled 93.3 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 39 d2nzca1 not modelled 92.4 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 40 c2zhoB_ not modelled 92.2 19 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 41 c3mahA_ not modelled 92.0 12 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 42 c3mgjA_ not modelled 90.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. 43 c2dgbA_ not modelled 89.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 44 c3l76B_ not modelled 89.2 12 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 45 d2cdqa3 not modelled 88.0 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 46 c2zw2B_ not modelled 86.5 15 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 47 d2j0wa2 not modelled 86.4 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 48 c1rwuA_ not modelled 86.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 49 d1rwua_ not modelled 86.3 20 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 50 c3c1nA_ not modelled 84.5 10 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 51 c2phmA_ not modelled 84.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 52 c3ab4K_ not modelled 83.9 12 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 53 d1gtda_ not modelled 83.4 19 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 54 d1vq3a_ not modelled 82.9 11 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 55 c1tdjA_ not modelled 80.9 17 PDB header:allostery Chain: A: PDB Molecule:biosynthetic threonine deaminase; PDBTitle: threonine deaminase (biosynthetic) from e. coli 56 c2cdqB_ not modelled 78.1 20 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 57 c2rjzA_ not modelled 76.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 58 d2j0wa3 not modelled 66.3 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 59 c3p96A_ not modelled 65.3 16 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form 60 c2jsxA_ not modelled 62.9 4 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 61 d1t4aa_ not modelled 56.0 14 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 62 c2yx5A_ not modelled 51.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0062 protein mj1593; PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway 63 d1tdja2 not modelled 42.9 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 64 d2joqa1 not modelled 42.7 14 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:HP0495-like 65 d1kona_ not modelled 29.9 16 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 66 c3ftbA_ not modelled 28.9 6 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 67 d1nhkl_ not modelled 23.9 13 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 68 c3cg4A_ not modelled 23.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 69 c2j0wA_ not modelled 21.2 14 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 70 d2hoxa1 not modelled 19.8 10 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 71 d1ehwa_ not modelled 19.4 27 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 72 c3js9A_ not modelled 19.1 16 PDB header:transferase Chain: A: PDB Molecule:nucleoside diphosphate kinase family protein; PDBTitle: crystal structure of nucleoside diphosphate kinase family protein from2 babesia bovis 73 d2c7pa1 not modelled 19.0 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:C5 cytosine-specific DNA methylase, DCM 74 c2hurF_ not modelled 17.8 13 PDB header:signaling protein,transferase Chain: F: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: escherichia coli nucleoside diphosphate kinase 75 c3hdvB_ not modelled 16.3 11 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 76 d1mw7a_ not modelled 16.1 11 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 77 d1dcta_ not modelled 15.8 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:C5 cytosine-specific DNA methylase, DCM 78 d2b3tb1 not modelled 15.7 13 Fold:Release factor Superfamily:Release factor Family:Release factor 79 d1w7wa_ not modelled 15.6 12 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 80 d1p4xa2 not modelled 15.2 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 81 d1qkka_ not modelled 15.1 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 82 d3bbba1 not modelled 15.0 15 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 83 d1lc5a_ not modelled 14.1 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 84 c1zbtA_ not modelled 13.8 11 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 85 d3ctaa1 not modelled 13.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 86 d2a9pa1 not modelled 13.5 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 87 d1rq0a_ not modelled 13.2 9 Fold:Release factor Superfamily:Release factor Family:Release factor 88 c1w7wF_ not modelled 13.1 12 PDB header:transferase Chain: F: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: structure and mutational analysis of a plant mitochondrial2 nucleoside diphosphate kinase: identification of residues3 involved in serine phosphorylation and oligomerization. 89 c3me5A_ not modelled 13.0 13 PDB header:transferase Chain: A: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 301 90 c3d5cX_ not modelled 12.3 13 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 91 c3eodA_ not modelled 12.2 4 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 92 c2l69A_ not modelled 12.2 30 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 93 c3q89H_ not modelled 12.1 16 PDB header:transferase Chain: H: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: crystal structure of staphylococcus aureus nucleoside diphosphate2 kinase complexed with cdp 94 c3o2sB_ not modelled 12.0 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72 complex 95 c3o2qB_ not modelled 11.7 29 PDB header:hydrolase Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex 96 d1y7pa2 not modelled 11.5 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:AF1403 N-terminal domain-like 97 d1wxma1 not modelled 11.1 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 98 d1mvoa_ not modelled 11.0 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 99 c3fdfA_ not modelled 10.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fr253; PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0