113 d1o89a2 Probab=98.24   E-value=2.9e-06  Score=54.06  Aligned_columns=161  Identities=18%

Q ss_pred             CCCHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCEE
Q ss_conf             642344555443100000012-----333432305888215765314565330367404551489999988852079789
Q batch____       136 GIDPQAAALIEPFAISAHAVR-----RAAIAPGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPL  210 (340)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (340)
                      ....+.+.+...+...+....     .........++.++.+.+|....+.+...+...+....++++.+.++..+.+++
T Consensus         1 ls~~~Aa~l~~~g~TA~~al~~~~~~~~~~~g~~vlV~ga~G~vG~~a~q~a~~~G~~vv~~~~~~~~~~~~~~lGa~~v   80 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRV   80 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEE
T ss_pred             CCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEE
T ss_conf             98788554118999999999999851567899879998386079999999962100111012333017999961298079


Q ss_pred             EECCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCC-CCCCCHHHHHHCCCEEEE--EECC
Q ss_conf             9778868888765320474201233024651036888864047809999467876-444433778655616999--9759
Q batch____       211 LDPSAEDFDAQLRAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKG-ELQFSDPEFHKKETTMMG--SRNA  287 (340)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g--~~~~  287 (340)
                      +++...+.     ..............................+++++..+.... ....+...++.+++++.|  +..+
T Consensus        81 i~~~~~~~-----~~~~~~~~~~~~~d~~g~~~~~~~l~~l~~~G~iv~vG~~~g~~~~~~~~~li~r~v~i~G~~s~~~  155 (177)
T d1o89a2          81 LPRDEFAE-----SRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMT  155 (177)
T ss_dssp             EEGGGSSS-----CCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSC
T ss_pred             EECCCHHH-----HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCC
T ss_conf             83887026-----5543204665444321103699999960389879998256788667788999743807988864568


Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999986
Q batch____       288 TPEDFAKVGRLMAE  301 (340)
Q Consensus       288 ~~~~~~~~~~l~~~  301 (340)
                      ++++.+++++.+.+
T Consensus       156 ~~~~~~~~~~~l~~  169 (177)
T d1o89a2         156 PPERRAQAWQRLVA  169 (177)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             98999999999997