16/01/2012 10:11:54 : INFO  : Run start: Mon Jan 16 10:11:54 GMT 2012
16/01/2012 10:11:55 : INFO  : Initialised job
16/01/2012 10:11:55 : INFO  : Renaming log file 'phyre2_20120116_101154.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/phyre_20120116_101154.log'
16/01/2012 10:11:55 : INFO  : Initialised job:
Sequence
>batch____
MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVG
AYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAAYSPAK
YGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVA
NIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGETRFSLVGTSLFWGAGVTLRFLLV
LWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVLIFS
LQHELLPAYALLMLIGVMGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLG
IYSLAVMIGIPVVPIGIGFGALFALAITALWIWQRRH

16/01/2012 10:11:55 : INFO  : Checked sequence
16/01/2012 10:11:55 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 10:11:55 : INFO  : PSI-BLAST 3 iterations
16/01/2012 10:15:50 : INFO  : PSI-BLAST 5 iterations
16/01/2012 10:23:03 : INFO  : Finished PSI-BLAST
16/01/2012 10:23:03 : INFO  : Running Buildali to generate a3m file
16/01/2012 12:35:30 : INFO  : Converting to HMM
16/01/2012 12:36:29 : INFO  : Calibrating HMM
16/01/2012 12:36:40 : INFO  : Searching HMM database
16/01/2012 12:44:11 : INFO  : Finished buildali
16/01/2012 12:44:11 : INFO  : Predicting secondary structure
16/01/2012 12:44:12 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 12:44:12 : INFO  : Predicting Disordered regions
16/01/2012 12:44:12 : INFO  : Predicted Disorder (Disopred)
16/01/2012 12:44:12 : INFO  : Running memsat_svm check
16/01/2012 12:48:03 : INFO  : Running memsat_svm full
16/01/2012 12:49:48 : INFO  : Predicted Transmembrane (memsat_svm) ID '4fef362045539b3f'
16/01/2012 12:49:48 : INFO  : Initialising fold library search
16/01/2012 12:49:48 : INFO  : Initialised search input
16/01/2012 12:49:48 : INFO  : Building Ensemble models
16/01/2012 12:49:49 : INFO  : Building hh.d1pv7a_.model.1.pdb
16/01/2012 12:49:49 : INFO  : Building hh.d1pw4a_.model.2.pdb
16/01/2012 12:49:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/hh.d1pw4a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/d1pw4a_.2.pdb
16/01/2012 12:49:50 : INFO  : Building hh.c2gfpA_.model.3.pdb
16/01/2012 12:49:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/hh.c2gfpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/c2gfpA_.3.pdb
16/01/2012 12:49:50 : INFO  : Building hh.c3o7pA_.model.4.pdb
16/01/2012 12:49:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/hh.c3o7pA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4fef362045539b3f/c3o7pA_.4.pdb
16/01/2012 12:49:51 : INFO  : Building d1pv7a_.1.pdb
16/01/2012 12:49:51 : INFO  : Building d1pw4a_.2.pdb
16/01/2012 12:49:51 : INFO  : Building c2gfpA_.3.pdb
16/01/2012 12:49:52 : INFO  : Building c3o7pA_.4.pdb
16/01/2012 12:49:52 : INFO  : Building c2xutC_.5.pdb
16/01/2012 12:49:53 : INFO  : Building c2w8aC_.6.pdb
16/01/2012 12:49:53 : INFO  : Building c2g9pA_.7.pdb
16/01/2012 12:49:54 : INFO  : Building c2xq2A_.8.pdb
16/01/2012 12:49:54 : INFO  : Building c2ks1B_.9.pdb
16/01/2012 12:49:54 : INFO  : Building c2bbjB_.10.pdb
16/01/2012 12:49:55 : INFO  : Building d2vuti1.11.pdb
16/01/2012 12:49:56 : INFO  : Building d1y0ja1.12.pdb
16/01/2012 12:49:56 : INFO  : Building d3gata_.13.pdb
16/01/2012 12:49:56 : INFO  : Building d1u69a_.14.pdb
16/01/2012 12:49:57 : INFO  : Building d1gnfa_.15.pdb
16/01/2012 12:49:57 : INFO  : Building c2jlnA_.16.pdb
16/01/2012 12:49:57 : INFO  : Building d5gata_.17.pdb
16/01/2012 12:49:58 : INFO  : Building d1m3va1.18.pdb
16/01/2012 12:49:58 : INFO  : Building c2kluA_.19.pdb
16/01/2012 12:49:58 : INFO  : Building c2kaeA_.20.pdb
16/01/2012 12:50:09 : INFO  : Finished HH model building
16/01/2012 12:50:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 12:50:17 : INFO  : html domain output complete ID '4fef362045539b3f'
16/01/2012 13:25:57 : INFO  : Run end  : Mon Jan 16 13:25:57 GMT 2012
