Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	A	L	Q	V	A	M	F	S	L	F	T	V	I	G	F	N	A	Q	A	N	E	H	H	H	E	T	M	S	E	A	Q	P	Q	V	I	S	A	T	G	V	V	K	G	I	D	L	E	S	K	K	I	T	I	H	H	D	P
Secondary structure
SS confidence
Disorder		?	?	?	?												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Sequence		I	A	A	V	N	W	P	E	M	T	M	R	F	T	I	T	P	Q	T	K	M	S	E	I	K	T	G	D	K	V	A	F	N	F	V	Q	Q	G	N	L	S	L	L	Q	D	I	K	V	S	Q
Secondary structure
SS confidence
Disorder																		?				?	?															?		?										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zeq chain X Region: 27 - 110 Aligned: 84 Modelled: 84 Confidence: 100.0% Identity: 99% PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli Phyre2 PDB 2l55 chain A Region: 35 - 109 Aligned: 73 Modelled: 75 Confidence: 99.9% Identity: 27% PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans Phyre2 PDB 3cam chain B Region: 40 - 109 Aligned: 66 Modelled: 70 Confidence: 95.2% Identity: 20% PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis Phyre2 PDB 2k5n chain A Region: 41 - 110 Aligned: 63 Modelled: 70 Confidence: 94.2% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a Phyre2 PDB 3trz chain E Region: 35 - 107 Aligned: 73 Modelled: 72 Confidence: 91.0% Identity: 15% PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element Phyre2 PDB 2es2 chain A domain 1 Region: 39 - 108 Aligned: 63 Modelled: 70 Confidence: 90.9% Identity: 16% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2kcm chain A Region: 41 - 108 Aligned: 60 Modelled: 68 Confidence: 87.9% Identity: 18% PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. Phyre2 PDB 1mjc chain A Region: 41 - 108 Aligned: 64 Modelled: 68 Confidence: 86.2% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1c9o chain A Region: 41 - 108 Aligned: 63 Modelled: 68 Confidence: 84.2% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3aqq chain D Region: 41 - 108 Aligned: 62 Modelled: 68 Confidence: 82.8% Identity: 13% PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 Phyre2 PDB 2ytx chain A Region: 81 - 108 Aligned: 28 Modelled: 28 Confidence: 81.6% Identity: 18% PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) Phyre2 PDB 1g6p chain A Region: 81 - 108 Aligned: 28 Modelled: 28 Confidence: 76.4% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1h95 chain A Region: 81 - 106 Aligned: 26 Modelled: 26 Confidence: 76.2% Identity: 15% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3tdq chain B Region: 36 - 108 Aligned: 67 Modelled: 73 Confidence: 75.0% Identity: 21% PDB header:cell adhesion Chain: B: PDB Molecule:pily2 protein; PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution Phyre2 PDB 2ytv chain A Region: 41 - 109 Aligned: 62 Modelled: 69 Confidence: 72.6% Identity: 15% PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein) Phyre2 PDB 1x65 chain A Region: 32 - 108 Aligned: 69 Modelled: 77 Confidence: 71.6% Identity: 14% PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) Phyre2 PDB 1wfq chain A Region: 81 - 108 Aligned: 28 Modelled: 28 Confidence: 68.3% Identity: 21% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 3d0f chain A Region: 42 - 106 Aligned: 64 Modelled: 65 Confidence: 68.1% Identity: 8% PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 Phyre2 PDB 2f5v chain A domain 2 Region: 50 - 80 Aligned: 31 Modelled: 31 Confidence: 62.8% Identity: 23% Fold: FAD-linked reductases, C-terminal domain Superfamily: FAD-linked reductases, C-terminal domain Family: GMC oxidoreductases Phyre2 PDB 2vc8 chain A Region: 41 - 58 Aligned: 18 Modelled: 18 Confidence: 61.9% Identity: 28% PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3) Phyre2 1 c1zeqX_ 2 c2l55A_ 3 c3camB_ 4 c2k5nA_ 5 c3trzE_ 6 d2es2a1 7 c2kcmA_ 8 d1mjca_ 9 d1c9oa_ 10 c3aqqD_ 11 c2ytxA_ 12 d1g6pa_ 13 d1h95a_ 14 c3tdqB_ 15 c2ytvA_ 16 c1x65A_ 17 d1wfqa_ 18 c3d0fA_ 19 d2f5va2 20 c2vc8A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zeqX_ 100.0 99 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 2 c2l55A_ 99.9 27 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 3 c3camB_ 95.2 20 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 4 c2k5nA_ 94.2 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cold-shock protein; PDBTitle: solution nmr structure of the n-terminal domain of protein2 eca1580 from erwinia carotovora, northeast structural3 genomics consortium target ewr156a 5 c3trzE_ 91.0 15 PDB header:rna binding protein/rna Chain: E: PDB Molecule:protein lin-28 homolog a; PDBTitle: mouse lin28a in complex with let-7d microrna pre-element 6 d2es2a1 90.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 7 c2kcmA_ 87.9 18 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 8 d1mjca_ 86.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 9 d1c9oa_ 84.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 c3aqqD_ 82.8 13 PDB header:dna binding protein Chain: D: PDB Molecule:calcium-regulated heat stable protein 1; PDBTitle: crystal structure of human crhsp-24 11 c2ytxA_ 81.6 18 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein) 12 d1g6pa_ 76.4 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 13 d1h95a_ 76.2 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c3tdqB_ 75.0 21 PDB header:cell adhesion Chain: B: PDB Molecule:pily2 protein; PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution 15 c2ytvA_ 72.6 15 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein) 16 c1x65A_ 71.6 14 PDB header:rna binding protein Chain: A: PDB Molecule:unr protein; PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein) 17 d1wfqa_ 68.3 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 18 c3d0fA_ 68.1 8 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 19 d2f5va2 62.8 23 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GMC oxidoreductases 20 c2vc8A_ 61.9 28 PDB header:protein-binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of the lsm domain of human edc3 (enhancer2 of decapping 3) 21 c3mmlE_ not modelled 60.2 10 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 22 c3a0jB_ not modelled 57.8 20 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 23 c2khiA_ not modelled 56.0 14 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 24 d1wida_ not modelled 55.2 21 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 25 d1qbaa2 not modelled 48.9 23 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Bacterial chitobiase, n-terminal domain 26 c3kf6B_ not modelled 47.6 29 PDB header:structural protein Chain: B: PDB Molecule:protein ten1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 27 d1x9la_ not modelled 43.4 17 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 28 d2ba0a1 not modelled 42.5 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 29 d1hh2p1 not modelled 39.8 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c3u7zA_ not modelled 39.4 14 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 31 c2vzaD_ not modelled 38.9 31 PDB header:cell adhesion Chain: D: PDB Molecule:cell filamentation protein; PDBTitle: type iv secretion system effector protein bepa 32 c2ytyA_ not modelled 38.1 13 PDB header:rna binding protein Chain: A: PDB Molecule:cold shock domain-containing protein e1; PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein) 33 c3m7aA_ not modelled 37.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of2 unknown function from novosphingobium aromaticivorans dsm3 12444 at 1.22 a resolution 34 c3ayhB_ not modelled 36.6 19 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase iii subunit rpc8; PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii 35 d1wi5a_ not modelled 29.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 36 d1gvha2 not modelled 29.2 8 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 37 d1gyca1 not modelled 28.2 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 38 c2k6zA_ not modelled 28.1 21 PDB header:metal transport Chain: A: PDB Molecule:putative uncharacterized protein ttha1943; PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14) 39 c3i18A_ not modelled 27.7 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b 40 d2phcb1 not modelled 27.4 22 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 41 c2phcB_ not modelled 27.3 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 42 d2f23a2 not modelled 25.6 10 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 43 c2h47C_ not modelled 25.6 29 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 44 d1xnea_ not modelled 25.5 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 45 d1qnia1 not modelled 25.2 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 46 d1u0la1 not modelled 25.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 47 c1t9hA_ not modelled 24.1 21 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 48 d2f1la1 not modelled 23.9 35 Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:RimM C-terminal domain-like 49 c2rf4A_ not modelled 23.5 15 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 50 c3mmlD_ not modelled 23.4 30 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 51 c3ie5A_ not modelled 22.3 11 PDB header:plant protein, biosynthetic protein Chain: A: PDB Molecule:phenolic oxidative coupling protein hyp-1; PDBTitle: crystal structure of hyp-1 protein from hypericum perforatum2 (st john's wort) involved in hypericin biosynthesis 52 d2cnda1 not modelled 21.5 11 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 53 d1v6ga2 not modelled 21.4 42 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 54 d1fwxa1 not modelled 20.8 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 55 c2aanA_ not modelled 20.0 19 PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus 56 c2khjA_ not modelled 19.7 15 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 57 d1tyeb1 not modelled 19.6 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Integrin domains Family:Integrin domains 58 d1cqxa2 not modelled 19.1 3 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 59 c2zp2B_ not modelled 19.1 44 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 60 d1joia_ not modelled 18.8 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 61 d1t9ha1 not modelled 18.7 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 62 c2p4vA_ not modelled 18.3 13 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 63 d2ccwa1 not modelled 18.2 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 64 d2c35b1 not modelled 17.8 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 65 d1ndha1 not modelled 17.4 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 66 c3oepA_ not modelled 17.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 67 d1cc3a_ not modelled 17.1 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 68 d1i94q_ not modelled 16.9 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 69 d1a5ra_ not modelled 16.3 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 70 d2etna2 not modelled 16.1 10 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 71 d2z0sa1 not modelled 16.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 72 d1ws8a_ not modelled 15.7 31 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 73 c2kjpA_ not modelled 15.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a 74 d1t2wa_ not modelled 15.3 20 Fold:Sortase Superfamily:Sortase Family:Sortase 75 c3pjyB_ not modelled 15.0 15 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 76 d1k0ha_ not modelled 15.0 6 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 77 d1azca_ not modelled 14.9 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 78 d1q46a2 not modelled 14.9 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 79 d1gawa1 not modelled 14.8 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 80 c2w1kB_ not modelled 14.7 17 PDB header:transferase Chain: B: PDB Molecule:putative sortase; PDBTitle: crystal structure of sortase c-3 (srtc-3) from2 streptococcus pneumoniae 81 d2z9ia1 not modelled 14.5 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 82 d1jb9a1 not modelled 14.5 28 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 83 d1nppa2 not modelled 14.1 35 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 84 d1nz9a_ not modelled 14.0 35 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 85 c3qo6B_ not modelled 13.9 17 PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 86 d1qfza1 not modelled 13.6 19 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 87 d2gnra1 not modelled 13.3 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 88 c3mjjD_ not modelled 13.3 20 PDB header:hydrolase Chain: D: PDB Molecule:predicted acetamidase/formamidase; PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis 89 d2i6va1 not modelled 13.2 8 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 90 d1n67a1 not modelled 13.0 19 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Fibrinogen-binding domain 91 c2l66B_ not modelled 12.9 32 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 92 d1jzga_ not modelled 12.6 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 93 c2rcnA_ not modelled 12.5 15 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 94 d1t3qb1 not modelled 12.2 12 Fold:alpha/beta-Hammerhead Superfamily:CO dehydrogenase molybdoprotein N-domain-like Family:CO dehydrogenase molybdoprotein N-domain-like 95 c3ke2A_ not modelled 12.2 31 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 96 c3fp9E_ not modelled 12.1 29 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 97 d1plaa_ not modelled 12.1 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 98 d1v10a2 not modelled 11.8 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 99 c2kw8A_ not modelled 11.8 13 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0