Phyre 2 alignment of Q9JMS4 with c3rnvA_

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Job Description | Q9JMS4
Confidence | 8.78% | Date | Wed Jan 25 15:21:16 GMT 2012
Rank | 14 | Aligned Residues | 24
% Identity | 33% | Template | c3rnvA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:helper component proteinase; | PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | P | K | E | G | L | S | F | A | M | T | T | Y | L | N | L | F | V | K | L | L | I | F | L | Y | I | Q | N | T | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | A | K | E | G | Y | C | . | . | . | . | . | Y | I | N | I | F | L | A | M | L | V | N | V | K | E | S | Q | A | K
Template Known Secondary structure |  |  |  | T | T |  | T | . | . | . | . | . | T |  |  |  |  |  |  |  | G | G | G | S |  | G | G | G |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 339 | 340 | . | . | . | . |  |  |  |  |  | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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