Phyre 2 alignment of Q9JMS4 with c2kq0A_

Return to main results | Retrieve Phyre Job Id

Job Description | Q9JMS4
Confidence | 1.48% | Date | Wed Jan 25 15:21:16 GMT 2012
Rank | 71 | Aligned Residues | 8
% Identity | 25% | Template | c2kq0A_
PDB info | PDB header:ligase | Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4; | PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 60 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |
Query Sequence |  | R | S | G | V | S | Y | Y | I
Query Conservation |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |
Template Sequence |  | P | N | G | R | P | F | F | I
Template Known Secondary structure |  | T | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |
|  | 23 | . | . | . | . | . | . | 30

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions