BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (136 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 285 3e-76 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 248 4e-65 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 196 2e-49 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 141 5e-33 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 139 4e-32 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 132 5e-30 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 125 6e-28 UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 122 3e-27 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 119 2e-26 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 117 2e-25 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 110 9e-24 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 92 6e-18 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 84 2e-15 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 82 6e-15 UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilon... 45 8e-04 UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 40 0.021 >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 285 bits (729), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD Sbjct: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQENAIYLMVRRLRD Sbjct: 121 IHQENAIYLMVRRLRD 136 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 117/136 (86%), Positives = 125/136 (91%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE VVFSQL RKFIDENDATP +AQQVVYYSLAIGHHLGVIDCLEAAL+CPW+ YLAWI Sbjct: 1 MSETVVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGS ARRKMEGVPKYGEIVID +HV MLANAFDKA++AQT QQQ WS +LSMLHD Sbjct: 61 ATLEAGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQE+AIYLMVRRLRD Sbjct: 121 IHQESAIYLMVRRLRD 136 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/98 (93%), Positives = 95/98 (96%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE+VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 2 MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 61 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDK 98 ATLEAGS+ARRKMEGVPKYGEIVID NHV MLA AFD+ Sbjct: 62 ATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDE 99 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 74/132 (56%), Positives = 93/132 (70%), Gaps = 4/132 (3%) Query: 5 VVFSQLSRKFI---DENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 VVF L+ KF+ +++ ATP A++V+YYSLAIGHHLGVIDCL+ L+ P +Y AWIA Sbjct: 14 VVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWIA 73 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDI 121 LEAG EARRK+EGV ++GEI IDI+H+ LA A D+A A T QQ WS L+ L I Sbjct: 74 QLEAG-EARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQLI 132 Query: 122 HQENAIYLMVRR 133 E IYLMV+R Sbjct: 133 ENEPTIYLMVKR 144 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 3/135 (2%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M+++V F +LSRKF+DE P EA++V+YYSLAIGHHLG++DCL A L CP Y W+ Sbjct: 1 MADQVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQT---SQQQEWSTMLLSM 117 A L AGSEARRKMEG +GEI I H MLA AFD+ R A Q W+ + Sbjct: 61 AKLPAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQ 120 Query: 118 LHDIHQENAIYLMVR 132 L ++ + +YLMVR Sbjct: 121 LTALYNDPHMYLMVR 135 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 1/133 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 + + V F L RKF+DE+ P EA+Q++YYSLAIGHHLGV+DCL+A L C EYL WI Sbjct: 19 LEKNVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWI 78 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA-QTSQQQEWSTMLLSMLH 119 + L+ EA RKM+G +GEI I H+ MLA AFD +A Q+ + ++ + + L Sbjct: 79 SGLDQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGIDSAIQSEKSKQLTHGFIEALG 138 Query: 120 DIHQENAIYLMVR 132 DIH+E +Y+M+R Sbjct: 139 DIHREQTMYMMIR 151 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 89/129 (68%), Gaps = 1/129 (0%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 V+F L++KF+D ++ P ++QQV+YYSLAIGHH+GVIDC + L C +++Y W+ L Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQE 124 SE++RK+ G+ K+GEI+ID+ H+ LA K R + Q+ EW+ +L++ I +E Sbjct: 72 E-SESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEWTDILMANFAAIQKE 130 Query: 125 NAIYLMVRR 133 A+YLMV+R Sbjct: 131 PAMYLMVKR 139 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 4 KVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 63 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 Query: 64 EAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQ 123 E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Q Sbjct: 67 EE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 Query: 124 ENAIYLMVRRL 134 E AIYLM R++ Sbjct: 126 EPAIYLMARKI 136 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 90/132 (68%), Gaps = 2/132 (1%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M +V F +L ++F+DE D PAE QQ+ YY+LAIGHH+GV+DCL + + + Y WI Sbjct: 1 MPGRVEFYKLCKRFVDEKD-VPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWI 59 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 + L G +AR K+EG+ ++GE+ I+ HVP L A ++A A+ ++++W+ LL +L+ Sbjct: 60 SKLPRG-KARSKLEGLARWGELEINKEHVPALIAALEEANASFLPEEKQWTDCLLRLLYA 118 Query: 121 IHQENAIYLMVR 132 + +E AIYL+VR Sbjct: 119 MEKEPAIYLVVR 130 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 5/132 (3%) Query: 4 KVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 63 KV+F L RKF+DE P EA+QV+YY+LAIGHHLG++DCLE A EY W+ L Sbjct: 55 KVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWVNLL 114 Query: 64 EAGSEARRKMEGVPKYGEIVIDINHVPMLANAF---DKARAAQTSQQQEWSTMLLSMLHD 120 + +EA RKM +GEI I +H+ MLA AF DKA+ + +++Q + + +L Sbjct: 115 DPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMS--TKEQTMTDAFIKVLTA 172 Query: 121 IHQENAIYLMVR 132 I+ E +Y+M+R Sbjct: 173 IYHEQTMYMMIR 184 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MS V+F +L+ K ++ + P +A+QV+YYSLAIGHH+GV DC + L C + + + Sbjct: 1 MSGDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 A + G EARRK++G+ ++GEI ID +H +L A D+ + S+ +W L L Sbjct: 61 AAMPEG-EARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADWLRELGVSLAA 119 Query: 121 IHQENAIYLMVRRL 134 I E AIYLM RRL Sbjct: 120 IEAEPAIYLMGRRL 133 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 1/126 (0%) Query: 9 QLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLEAGSE 68 +L RKF+D + P +A+ V+YY+L++GHH GVIDC E L+ P + + ATL G E Sbjct: 25 RLVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICATLPEG-E 83 Query: 69 ARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQENAIY 128 AR K+EGV ++ EI + V ++ +A + +A + + + L L + +E ++Y Sbjct: 84 ARYKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIVREEPSVY 143 Query: 129 LMVRRL 134 +MVR + Sbjct: 144 VMVREV 149 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 11/142 (7%) Query: 3 EKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIAT 62 ++VVF +L+RKF++ + P EA V+YY+LA+GHH GV+DC E L+ P D + + + Sbjct: 44 DQVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVDA 103 Query: 63 LEAGSEARRKMEGVPKYGEIVIDINHVPML---ANAFDKARAAQTSQQQEWSTMLLSMLH 119 L G EA+ K E + +GE +D VP L +A R + S + S + Sbjct: 104 LPEG-EAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGIS--VFDDDF 160 Query: 120 DIHQENAIYLM-----VRRLRD 136 +H + +LM V R+RD Sbjct: 161 GLHAQQVAFLMKFRDLVERVRD 182 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 14/145 (9%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + + F L+RK +D + P + Q V+YY+LAIGHH GV+D E L+ P + Y + Sbjct: 20 GDHISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVD 79 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLA-------------NAFDKARAAQTSQQQ 108 +E +ARRK GV K+GEI + H+ + N K + T+ + Sbjct: 80 LME-DDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEI 138 Query: 109 EWSTMLLSMLHDIHQENAIYLMVRR 133 + + L+ +L + E +YLMVRR Sbjct: 139 DELSRLVELLLRVRSETNVYLMVRR 163 >UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilonproteobacteria RepID=A7ZBL6_CAMC1 Length = 114 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 9 QLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLEAGSE 68 +L+++ +D+N+ P E +++ +S +GH +G ID E L +E+ I +G Sbjct: 6 KLTKRHMDDNEKLPRELKEIKIFSTCVGHGVGTIDFSEKVLELSDEEFDEMIKN--SGEY 63 Query: 69 ARRKMEGVPKYGEIVIDINHVPML 92 + K+ + KY E+ I H+ L Sbjct: 64 VKFKIGNLSKYFEVEIFAEHIARL 87 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%) Query: 9 QLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLEAGSE 68 +L+++ +DEN P +Q+V +S +GH +G ID E +D+ W L++ E Sbjct: 6 KLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTIDFNEK--IAEFDDE-QWNKMLDSSDE 62 Query: 69 -ARRKMEGVPKYGEIVIDINHVPMLANAFDKAR 100 + K+ V KY E+ I H +L + ++ Sbjct: 63 YVKFKLGNVNKYFEVEILPVHAKVLKDKLPNSK 95 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 211 8e-54 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 209 3e-53 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 191 4e-48 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 181 7e-45 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 177 1e-43 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 176 2e-43 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 176 2e-43 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 169 2e-41 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 169 2e-41 UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 166 2e-40 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 155 3e-37 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 154 6e-37 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 149 3e-35 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 147 1e-34 UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilon... 99 4e-20 Sequences not found previously or not previously below threshold: UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 79 4e-14 UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylo... 79 5e-14 >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 211 bits (536), Expect = 8e-54, Method: Composition-based stats. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD Sbjct: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQENAIYLMVRRLRD Sbjct: 121 IHQENAIYLMVRRLRD 136 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 209 bits (531), Expect = 3e-53, Method: Composition-based stats. Identities = 117/136 (86%), Positives = 125/136 (91%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE VVFSQL RKFIDENDATP +AQQVVYYSLAIGHHLGVIDCLEAAL+CPW+ YLAWI Sbjct: 1 MSETVVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGS ARRKMEGVPKYGEIVID +HV MLANAFDKA++AQT QQQ WS +LSMLHD Sbjct: 61 ATLEAGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQE+AIYLMVRRLRD Sbjct: 121 IHQESAIYLMVRRLRD 136 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 191 bits (486), Expect = 4e-48, Method: Composition-based stats. Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 3/135 (2%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M+++V F +LSRKF+DE P EA++V+YYSLAIGHHLG++DCL A L CP Y W+ Sbjct: 1 MADQVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA---QTSQQQEWSTMLLSM 117 A L AGSEARRKMEG +GEI I H MLA AFD+ R A Q W+ + Sbjct: 61 AKLPAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQ 120 Query: 118 LHDIHQENAIYLMVR 132 L ++ + +YLMVR Sbjct: 121 LTALYNDPHMYLMVR 135 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 181 bits (459), Expect = 7e-45, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 89/129 (68%), Gaps = 1/129 (0%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 V+F L++KF+D ++ P ++QQV+YYSLAIGHH+GVIDC + L C +++Y W+ L Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQE 124 SE++RK+ G+ K+GEI+ID+ H+ LA K R + Q+ EW+ +L++ I +E Sbjct: 72 E-SESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEWTDILMANFAAIQKE 130 Query: 125 NAIYLMVRR 133 A+YLMV+R Sbjct: 131 PAMYLMVKR 139 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 177 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 4/133 (3%) Query: 4 KVVFSQLSRKFI---DENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 VVF L+ KF+ +++ ATP A++V+YYSLAIGHHLGVIDCL+ L+ P +Y AWI Sbjct: 13 TVVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWI 72 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 A LEAG EARRK+EGV ++GEI IDI+H+ LA A D+A A T QQ WS L+ L Sbjct: 73 AQLEAG-EARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQL 131 Query: 121 IHQENAIYLMVRR 133 I E IYLMV+R Sbjct: 132 IENEPTIYLMVKR 144 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 176 bits (447), Expect = 2e-43, Method: Composition-based stats. Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 1/133 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 + + V F L RKF+DE+ P EA+Q++YYSLAIGHHLGV+DCL+A L C EYL WI Sbjct: 19 LEKNVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWI 78 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA-QTSQQQEWSTMLLSMLH 119 + L+ EA RKM+G +GEI I H+ MLA AFD +A Q+ + ++ + + L Sbjct: 79 SGLDQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGIDSAIQSEKSKQLTHGFIEALG 138 Query: 120 DIHQENAIYLMVR 132 DIH+E +Y+M+R Sbjct: 139 DIHREQTMYMMIR 151 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MS V+F +L+ K ++ + P +A+QV+YYSLAIGHH+GV DC + L C + + + Sbjct: 1 MSGDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 A + G EARRK++G+ ++GEI ID +H +L A D+ + S+ +W L L Sbjct: 61 AAMPEG-EARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADWLRELGVSLAA 119 Query: 121 IHQENAIYLMVRRL 134 I E AIYLM RRL Sbjct: 120 IEAEPAIYLMGRRL 133 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 89/132 (67%), Gaps = 2/132 (1%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M +V F +L ++F+DE PAE QQ+ YY+LAIGHH+GV+DCL + + + Y WI Sbjct: 1 MPGRVEFYKLCKRFVDEK-DVPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWI 59 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 + L G +AR K+EG+ ++GE+ I+ HVP L A ++A A+ ++++W+ LL +L+ Sbjct: 60 SKLPRG-KARSKLEGLARWGELEINKEHVPALIAALEEANASFLPEEKQWTDCLLRLLYA 118 Query: 121 IHQENAIYLMVR 132 + +E AIYL+VR Sbjct: 119 MEKEPAIYLVVR 130 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 169 bits (428), Expect = 2e-41, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 1/132 (0%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + KV+F L RKF+DE P EA+QV+YY+LAIGHHLG++DCLE A EY W+ Sbjct: 53 TGKVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWVN 112 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA-QTSQQQEWSTMLLSMLHD 120 L+ +EA RKM +GEI I +H+ MLA AF A ++++Q + + +L Sbjct: 113 LLDPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMSTKEQTMTDAFIKVLTA 172 Query: 121 IHQENAIYLMVR 132 I+ E +Y+M+R Sbjct: 173 IYHEQTMYMMIR 184 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 63/132 (47%), Positives = 82/132 (62%), Gaps = 1/132 (0%) Query: 3 EKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIAT 62 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A Sbjct: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 Query: 63 LEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIH 122 +E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Sbjct: 66 VEE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 Query: 123 QENAIYLMVRRL 134 QE AIYLM R++ Sbjct: 125 QEPAIYLMARKI 136 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 92/98 (93%), Positives = 95/98 (96%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE+VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 2 MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 61 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDK 98 ATLEAGS+ARRKMEGVPKYGEIVID NHV MLA AFD+ Sbjct: 62 ATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDE 99 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 154 bits (390), Expect = 6e-37, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + V +L RKF+D + P +A+ V+YY+L++GHH GVIDC E L+ P + + A Sbjct: 18 ARTVRVHRLVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICA 77 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDI 121 TL G EAR K+EGV ++ EI + V ++ +A + +A + + + L L + Sbjct: 78 TLPEG-EARYKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIV 136 Query: 122 HQENAIYLMVRRL 134 +E ++Y+MVR + Sbjct: 137 REEPSVYVMVREV 149 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 11/143 (7%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 ++VVF +L+RKF++ + P EA V+YY+LA+GHH GV+DC E L+ P D + + + Sbjct: 43 PDQVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVD 102 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPML---ANAFDKARAAQTSQQQEWSTMLLSML 118 L G EA+ K E + +GE +D VP L +A R + S + S + Sbjct: 103 ALPEG-EAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGIS--VFDDD 159 Query: 119 HDIHQENAIYLM-----VRRLRD 136 +H + +LM V R+RD Sbjct: 160 FGLHAQQVAFLMKFRDLVERVRD 182 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + + F L+RK +D + P + Q V+YY+LAIGHH GV+D E L+ P + Y + Sbjct: 20 GDHISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVD 79 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLA-------------NAFDKARAAQTSQQQ 108 + +ARRK GV K+GEI + H+ + N K + T+ + Sbjct: 80 LM-EDDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEI 138 Query: 109 EWSTMLLSMLHDIHQENAIYLMVRRLR 135 + + L+ +L + E +YLMVRR + Sbjct: 139 DELSRLVELLLRVRSETNVYLMVRRTQ 165 >UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilonproteobacteria RepID=A7ZBL6_CAMC1 Length = 114 Score = 98.9 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + +L+++ +D+N+ P E +++ +S +GH +G ID E L +E+ I Sbjct: 2 IQVYKLTKRHMDDNEKLPRELKEIKIFSTCVGHGVGTIDFSEKVLELSDEEFDEMIKN-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLA 93 +G + K+ + KY E+ I H+ L Sbjct: 60 SGEYVKFKIGNLSKYFEVEIFAEHIARLL 88 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 78.9 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + +L+++ +DEN P +Q+V +S +GH +G ID E +++ + + Sbjct: 2 IQVWKLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTIDFNEKIAEFDDEQWNKMLDS-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAF 96 + + K+ V KY E+ I H +L + Sbjct: 60 SDEYVKFKLGNVNKYFEVEILPVHAKVLKDKL 91 >UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylobacterales RepID=D1B464_SULD5 Length = 115 Score = 78.9 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + QL ++ +D + A+ +Q+ +S IGH +G ID E L + Y +A Sbjct: 2 IEVYQLRKRHLDGAKSGDAKLEQIKIFSTCIGHGIGTIDFSEKVLEIENEAYENILAG-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLA 93 G + K+ + KY EI I H L Sbjct: 60 GGKYLKFKLGNLSKYFEIEIFPEHAQKLL 88 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 199 2e-50 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 199 3e-50 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 182 2e-45 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 172 2e-42 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 169 3e-41 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 168 4e-41 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 168 4e-41 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 164 9e-40 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 163 1e-39 UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 160 1e-38 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 155 4e-37 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 147 8e-35 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 143 2e-33 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 140 1e-32 UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 108 6e-23 UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilon... 103 1e-21 UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylo... 101 6e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD Sbjct: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQENAIYLMVRRLRD Sbjct: 121 IHQENAIYLMVRRLRD 136 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 117/136 (86%), Positives = 125/136 (91%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE VVFSQL RKFIDENDATP +AQQVVYYSLAIGHHLGVIDCLEAAL+CPW+ YLAWI Sbjct: 1 MSETVVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWI 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 ATLEAGS ARRKMEGVPKYGEIVID +HV MLANAFDKA++AQT QQQ WS +LSMLHD Sbjct: 61 ATLEAGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHD 120 Query: 121 IHQENAIYLMVRRLRD 136 IHQE+AIYLMVRRLRD Sbjct: 121 IHQESAIYLMVRRLRD 136 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 182 bits (463), Expect = 2e-45, Method: Composition-based stats. Identities = 68/135 (50%), Positives = 87/135 (64%), Gaps = 3/135 (2%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M+++V F +LSRKF+DE P EA++V+YYSLAIGHHLG++DCL A L CP Y W+ Sbjct: 1 MADQVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA---QTSQQQEWSTMLLSM 117 A L AGSEARRKMEG +GEI I H MLA AFD+ R A Q W+ + Sbjct: 61 AKLPAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQ 120 Query: 118 LHDIHQENAIYLMVR 132 L ++ + +YLMVR Sbjct: 121 LTALYNDPHMYLMVR 135 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 172 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 89/129 (68%), Gaps = 1/129 (0%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 V+F L++KF+D ++ P ++QQV+YYSLAIGHH+GVIDC + L C +++Y W+ L Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQE 124 SE++RK+ G+ K+GEI+ID+ H+ LA K R + Q+ EW+ +L++ I +E Sbjct: 72 E-SESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEWTDILMANFAAIQKE 130 Query: 125 NAIYLMVRR 133 A+YLMV+R Sbjct: 131 PAMYLMVKR 139 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 169 bits (427), Expect = 3e-41, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 82/134 (61%), Gaps = 1/134 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MS V+F +L+ K ++ + P +A+QV+YYSLAIGHH+GV DC + L C + + + Sbjct: 1 MSGDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLV 60 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 A + G EARRK++G+ ++GEI ID +H +L A D+ + S+ +W L L Sbjct: 61 AAMPEG-EARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADWLRELGVSLAA 119 Query: 121 IHQENAIYLMVRRL 134 I E AIYLM RRL Sbjct: 120 IEAEPAIYLMGRRL 133 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 168 bits (426), Expect = 4e-41, Method: Composition-based stats. Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 4/133 (3%) Query: 4 KVVFSQLSRKFI---DENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 VVF L+ KF+ +++ ATP A++V+YYSLAIGHHLGVIDCL+ L+ P +Y AWI Sbjct: 13 TVVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWI 72 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 A LEAG EARRK+EGV ++GEI IDI+H+ LA A D+A A T QQ WS L+ L Sbjct: 73 AQLEAG-EARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQL 131 Query: 121 IHQENAIYLMVRR 133 I E IYLMV+R Sbjct: 132 IENEPTIYLMVKR 144 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 168 bits (426), Expect = 4e-41, Method: Composition-based stats. Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 1/133 (0%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 + + V F L RKF+DE+ P EA+Q++YYSLAIGHHLGV+DCL+A L C EYL WI Sbjct: 19 LEKNVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWI 78 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA-QTSQQQEWSTMLLSMLH 119 + L+ EA RKM+G +GEI I H+ MLA AFD +A Q+ + ++ + + L Sbjct: 79 SGLDQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGIDSAIQSEKSKQLTHGFIEALG 138 Query: 120 DIHQENAIYLMVR 132 DIH+E +Y+M+R Sbjct: 139 DIHREQTMYMMIR 151 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 164 bits (415), Expect = 9e-40, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 88/132 (66%), Gaps = 2/132 (1%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 M +V F +L ++F+DE PAE QQ+ YY+LAIGHH+GV+DCL + + + Y WI Sbjct: 1 MPGRVEFYKLCKRFVDE-KDVPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWI 59 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHD 120 + L G AR K+EG+ ++GE+ I+ HVP L A ++A A+ ++++W+ LL +L+ Sbjct: 60 SKLPRGK-ARSKLEGLARWGELEINKEHVPALIAALEEANASFLPEEKQWTDCLLRLLYA 118 Query: 121 IHQENAIYLMVR 132 + +E AIYL+VR Sbjct: 119 MEKEPAIYLVVR 130 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 1/132 (0%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + KV+F L RKF+DE P EA+QV+YY+LAIGHHLG++DCLE A EY W+ Sbjct: 53 TGKVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWVN 112 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA-QTSQQQEWSTMLLSMLHD 120 L+ +EA RKM +GEI I +H+ MLA AF A ++++Q + + +L Sbjct: 113 LLDPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMSTKEQTMTDAFIKVLTA 172 Query: 121 IHQENAIYLMVR 132 I+ E +Y+M+R Sbjct: 173 IYHEQTMYMMIR 184 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 63/132 (47%), Positives = 82/132 (62%), Gaps = 1/132 (0%) Query: 3 EKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIAT 62 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A Sbjct: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 Query: 63 LEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIH 122 +E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Sbjct: 66 VEE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 Query: 123 QENAIYLMVRRL 134 QE AIYLM R++ Sbjct: 125 QEPAIYLMARKI 136 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 155 bits (391), Expect = 4e-37, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + V +L RKF+D + P +A+ V+YY+L++GHH GVIDC E L+ P + + A Sbjct: 18 ARTVRVHRLVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICA 77 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDI 121 TL G EAR K+EGV ++ EI + V ++ +A + +A + + + L L + Sbjct: 78 TLPEG-EARYKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIV 136 Query: 122 HQENAIYLMVRRL 134 +E ++Y+MVR + Sbjct: 137 REEPSVYVMVREV 149 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 147 bits (372), Expect = 8e-35, Method: Composition-based stats. Identities = 92/98 (93%), Positives = 95/98 (96%) Query: 1 MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 60 MSE+VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI Sbjct: 2 MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWI 61 Query: 61 ATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDK 98 ATLEAGS+ARRKMEGVPKYGEIVID NHV MLA AFD+ Sbjct: 62 ATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDE 99 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 14/147 (9%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 + + F L+RK +D + P + Q V+YY+LAIGHH GV+D E L+ P + Y + Sbjct: 20 GDHISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVD 79 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPMLA-------------NAFDKARAAQTSQQQ 108 + +ARRK GV K+GEI + H+ + N K + T+ + Sbjct: 80 LM-EDDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEI 138 Query: 109 EWSTMLLSMLHDIHQENAIYLMVRRLR 135 + + L+ +L + E +YLMVRR + Sbjct: 139 DELSRLVELLLRVRSETNVYLMVRRTQ 165 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 11/143 (7%) Query: 2 SEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIA 61 ++VVF +L+RKF++ + P EA V+YY+LA+GHH GV+DC E L+ P D + + + Sbjct: 43 PDQVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVD 102 Query: 62 TLEAGSEARRKMEGVPKYGEIVIDINHVPML---ANAFDKARAAQTSQQQEWSTMLLSML 118 L G EA+ K E + +GE +D VP L +A R + S + S + Sbjct: 103 ALPEG-EAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGIS--VFDDD 159 Query: 119 HDIHQENAIYLM-----VRRLRD 136 +H + +LM V R+RD Sbjct: 160 FGLHAQQVAFLMKFRDLVERVRD 182 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + +L+++ +DEN P +Q+V +S +GH +G ID E +++ + + Sbjct: 2 IQVWKLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTIDFNEKIAEFDDEQWNKMLDS-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAF 96 + + K+ V KY E+ I H +L + Sbjct: 60 SDEYVKFKLGNVNKYFEVEILPVHAKVLKDKL 91 >UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilonproteobacteria RepID=A7ZBL6_CAMC1 Length = 114 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + +L+++ +D+N+ P E +++ +S +GH +G ID E L +E+ I Sbjct: 2 IQVYKLTKRHMDDNEKLPRELKEIKIFSTCVGHGVGTIDFSEKVLELSDEEFDEMIKN-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLANAF 96 +G + K+ + KY E+ I H+ L Sbjct: 60 SGEYVKFKIGNLSKYFEVEIFAEHIARLLPQL 91 >UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylobacterales RepID=D1B464_SULD5 Length = 115 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 5 VVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATLE 64 + QL ++ +D + A+ +Q+ +S IGH +G ID E L + Y +A Sbjct: 2 IEVYQLRKRHLDGAKSGDAKLEQIKIFSTCIGHGIGTIDFSEKVLEIENEAYENILAG-- 59 Query: 65 AGSEARRKMEGVPKYGEIVIDINHVPMLA 93 G + K+ + KY EI I H L Sbjct: 60 GGKYLKFKLGNLSKYFEIEIFPEHAQKLL 88 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.317 0.142 0.393 Lambda K H 0.267 0.0435 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 747,724,966 Number of Sequences: 3077464 Number of extensions: 24953425 Number of successful extensions: 66524 Number of sequences better than 1.0e-01: 17 Number of HSP's better than 0.1 without gapping: 48 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 66430 Number of HSP's gapped (non-prelim): 50 length of query: 136 length of database: 1,040,396,356 effective HSP length: 101 effective length of query: 35 effective length of database: 729,572,492 effective search space: 25535037220 effective search space used: 25535037220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.0 bits)