Phyre 2 Results for P76395

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Email | l.a.kelley@imperial.ac.uk
Description | P76395
Date | Thu Jan 5 12:22:33 GMT 2012
Unique Job ID | 4eecc6d5947d364b

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c1a6qA_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:phosphatase 2c; PDBTitle: crystal structure of the protein serine/threonine phosphatase 2c at 22 a resolution
Confidence and coverage
Confidence: | 100.0% | Coverage: | 91%
229 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | W | R | L | V | Y | A | S | T | V | G | T | S | H | I | S | A | D | L | P | C | Q | D | A | C | Q | M | Q | I | A | W | L | N | D | Q | Q | P | L | L | S | V | F | V | A | D | G | A | G | S | V | S | Q | G | G | E | G | A | M | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | V | N | E | A | M | A | Y | M | S | Q | K | V | Q | G | G | E | L | G | L | N | D | V | L | A | T | N | M | V | L | T | I | R | Q | R | L | F | A | E | A | E | A | K | E | L | A | V | R | D | F | A | C | T | F | L | G | L | I | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | P | D | G | T | L | I | M | Q | I | G | D | G | G | V | V | V | D | L | G | H | G | L | Q | L | P | L | T | P | M | A | G | E | Y | A | N | M | T | H | F | I | T | D | E | D | A | V | S | R | L | E | T | F | T | S | T | G | R | A | H | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | V | A | A | F | T | D | G | I | Q | R | L | A | L | N | M | L | D | N | S | P | H | V | P | F | F | T | P | F | F | N | G | L | A | A | A | T | Q | E | Q | L | D | L | L | P | E | L | L | K | Q | F | L | S | S | P | A | V | N | E | R | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | .
Sequence |  | D | D | D | K | T | L | A | L | A | L | W | A | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1a6qA_ |

### PDB 1a6q chain A

Region: 4 - 251
Aligned: 229
Modelled: 237
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase 2c;
PDBTitle: crystal structure of the protein serine/threonine phosphatase 2c at 22 a resolution

Phyre2
2 |
| d1txoa_ |

### PDB 1txo chain A

Region: 1 - 251
Aligned: 214
Modelled: 251
Confidence: 100.0%
Identity: 16%
Fold: PP2C-like
Superfamily: PP2C-like
Family: PP2C-like

Phyre2
3 |
| c2pk0C_ |

### PDB 2pk0 chain C

Region: 4 - 251
Aligned: 220
Modelled: 237
Confidence: 100.0%
Identity: 15%
PDB header:signaling protein
Chain: C: PDB Molecule:serine/threonine protein phosphatase stp1;
PDBTitle: structure of the s. agalactiae serine/threonine phosphatase at 2.652 resolution

Phyre2
4 |
| d1a6qa2 |

### PDB 1a6q chain A domain 2

Region: 3 - 251
Aligned: 230
Modelled: 238
Confidence: 100.0%
Identity: 16%
Fold: PP2C-like
Superfamily: PP2C-like
Family: PP2C-like

Phyre2
5 |
| c3kdjB_ |

### PDB 3kdj chain B

Region: 5 - 251
Aligned: 233
Modelled: 247
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase/hormone receptor
Chain: B: PDB Molecule:protein phosphatase 2c 56;
PDBTitle: complex structure of (+)-aba-bound pyl1 and abi1

Phyre2
6 |
| c2i44A_ |

### PDB 2i44 chain A

Region: 2 - 251
Aligned: 232
Modelled: 238
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:serine-threonine phosphatase 2c;
PDBTitle: crystal structure of serine-threonine phosphatase 2c from2 toxoplasma gondii

Phyre2
7 |
| c2cm1A_ |

### PDB 2cm1 chain A

Region: 1 - 253
Aligned: 216
Modelled: 253
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:serine threonine protein phosphatase pstp;
PDBTitle: crystal structure of the catalytic domain of serine2 threonine protein phosphatase pstp in complex with3 2 manganese ions.

Phyre2
8 |
| c3kb3B_ |

### PDB 3kb3 chain B

Region: 4 - 251
Aligned: 227
Modelled: 237
Confidence: 100.0%
Identity: 15%
PDB header:signaling protein
Chain: B: PDB Molecule:protein phosphatase 2c 16;
PDBTitle: crystal structure of abscisic acid-bound pyl2 in complex with hab1

Phyre2
9 |
| c2jfsA_ |

### PDB 2jfs chain A

Region: 4 - 249
Aligned: 206
Modelled: 235
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:ser-thr phosphatase mspp;
PDBTitle: crystal structure of the ppm ser-thr phosphatase mspp from2 mycobacterium smegmatis in complex with cacodylate

Phyre2
10 |
| c2i0oA_ |

### PDB 2i0o chain A

Region: 3 - 251
Aligned: 223
Modelled: 238
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:ser/thr phosphatase;
PDBTitle: crystal structure of anopheles gambiae ser/thr phosphatase complexed2 with zn2+

Phyre2
11 |
| c2iq1A_ |

### PDB 2iq1 chain A

Region: 5 - 252
Aligned: 215
Modelled: 232
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:protein phosphatase 2c kappa, ppm1k;
PDBTitle: crystal structure of human ppm1k

Phyre2
12 |
| c2irmA_ |

### PDB 2irm chain A

Region: 5 - 251
Aligned: 241
Modelled: 247
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 7
PDBTitle: crystal structure of mitogen-activated protein kinase kinase kinase 72 interacting protein 1 from anopheles gambiae

Phyre2
13 |
| c2isnB_ |

### PDB 2isn chain B

Region: 4 - 253
Aligned: 230
Modelled: 224
Confidence: 100.0%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:nysgxrc-8828z, phosphatase;
PDBTitle: crystal structure of a phosphatase from a pathogenic strain toxoplasma2 gondii

Phyre2
14 |
| c2pnqA_ |

### PDB 2pnq chain A

Region: 18 - 251
Aligned: 217
Modelled: 234
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]]-phosphatase
PDBTitle: crystal structure of pyruvate dehydrogenase phosphatase 12 (pdp1)

Phyre2
15 |
| c2j82A_ |

### PDB 2j82 chain A

Region: 4 - 249
Aligned: 215
Modelled: 235
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:protein serine-threonine phosphatase;
PDBTitle: structural analysis of the pp2c family phosphatase tppha2 from thermosynechococcus elongatus

Phyre2
16 |
| c2pomA_ |

### PDB 2pom chain A

Region: 5 - 251
Aligned: 241
Modelled: 245
Confidence: 99.9%
Identity: 12%
PDB header:signaling protein/metal binding protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 7-
PDBTitle: tab1 with manganese ion

Phyre2
17 |
| c2j4oA_ |

### PDB 2j4o chain A

Region: 5 - 251
Aligned: 241
Modelled: 247
Confidence: 99.9%
Identity: 12%
PDB header:protein binding
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase
PDBTitle: structure of tab1

Phyre2
18 |
| c3rnrB_ |

### PDB 3rnr chain B

Region: 23 - 249
Aligned: 192
Modelled: 205
Confidence: 99.9%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:stage ii sporulation e family protein;
PDBTitle: crystal structure of stage ii sporulation e family protein from2 thermanaerovibrio acidaminovorans

Phyre2
19 |
| c3d8kD_ |

### PDB 3d8k chain D

Region: 7 - 253
Aligned: 213
Modelled: 229
Confidence: 99.9%
Identity: 14%
PDB header:hydrolase
Chain: D: PDB Molecule:protein phosphatase 2c;
PDBTitle: crsytal structure of a phosphatase from a toxoplasma gondii

Phyre2
20 |
| c3pu9A_ |

### PDB 3pu9 chain A

Region: 1 - 253
Aligned: 217
Modelled: 239
Confidence: 99.8%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:protein serine/threonine phosphatase;
PDBTitle: crystal structure of serine/threonine phosphatase sphaerobacter2 thermophilus dsm 20745

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1a6qA_ |
|  | 100.0 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:phosphatase 2c; PDBTitle: crystal structure of the protein serine/threonine phosphatase 2c at 22 a resolution
2 | d1txoa_ |
|  | 100.0 | 16 | Fold:PP2C-like Superfamily:PP2C-like Family:PP2C-like
3 | c2pk0C_ |
|  | 100.0 | 15 | PDB header:signaling protein Chain: C: PDB Molecule:serine/threonine protein phosphatase stp1; PDBTitle: structure of the s. agalactiae serine/threonine phosphatase at 2.652 resolution
4 | d1a6qa2 |
|  | 100.0 | 16 | Fold:PP2C-like Superfamily:PP2C-like Family:PP2C-like
5 | c3kdjB_ |
|  | 100.0 | 15 | PDB header:hydrolase/hormone receptor Chain: B: PDB Molecule:protein phosphatase 2c 56; PDBTitle: complex structure of (+)-aba-bound pyl1 and abi1
6 | c2i44A_ |
|  | 100.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:serine-threonine phosphatase 2c; PDBTitle: crystal structure of serine-threonine phosphatase 2c from2 toxoplasma gondii
7 | c2cm1A_ |
|  | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:serine threonine protein phosphatase pstp; PDBTitle: crystal structure of the catalytic domain of serine2 threonine protein phosphatase pstp in complex with3 2 manganese ions.
8 | c3kb3B_ |
|  | 100.0 | 15 | PDB header:signaling protein Chain: B: PDB Molecule:protein phosphatase 2c 16; PDBTitle: crystal structure of abscisic acid-bound pyl2 in complex with hab1
9 | c2jfsA_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:ser-thr phosphatase mspp; PDBTitle: crystal structure of the ppm ser-thr phosphatase mspp from2 mycobacterium smegmatis in complex with cacodylate
10 | c2i0oA_ |
|  | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:ser/thr phosphatase; PDBTitle: crystal structure of anopheles gambiae ser/thr phosphatase complexed2 with zn2+
11 | c2iq1A_ |
|  | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:protein phosphatase 2c kappa, ppm1k; PDBTitle: crystal structure of human ppm1k
12 | c2irmA_ |
|  | 100.0 | 11 | PDB header:transferase Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 7 PDBTitle: crystal structure of mitogen-activated protein kinase kinase kinase 72 interacting protein 1 from anopheles gambiae
13 | c2isnB_ |
|  | 100.0 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:nysgxrc-8828z, phosphatase; PDBTitle: crystal structure of a phosphatase from a pathogenic strain toxoplasma2 gondii
14 | c2pnqA_ |
|  | 100.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]]-phosphatase PDBTitle: crystal structure of pyruvate dehydrogenase phosphatase 12 (pdp1)
15 | c2j82A_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:protein serine-threonine phosphatase; PDBTitle: structural analysis of the pp2c family phosphatase tppha2 from thermosynechococcus elongatus
16 | c2pomA_ |
|  | 99.9 | 12 | PDB header:signaling protein/metal binding protein Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 7- PDBTitle: tab1 with manganese ion
17 | c2j4oA_ |
|  | 99.9 | 12 | PDB header:protein binding Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase PDBTitle: structure of tab1
18 | c3rnrB_ |
|  | 99.9 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:stage ii sporulation e family protein; PDBTitle: crystal structure of stage ii sporulation e family protein from2 thermanaerovibrio acidaminovorans
19 | c3d8kD_ |
|  | 99.9 | 14 | PDB header:hydrolase Chain: D: PDB Molecule:protein phosphatase 2c; PDBTitle: crsytal structure of a phosphatase from a toxoplasma gondii
20 | c3pu9A_ |
|  | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:protein serine/threonine phosphatase; PDBTitle: crystal structure of serine/threonine phosphatase sphaerobacter2 thermophilus dsm 20745
21 | c3t9qB_ |
| not modelled | 99.6 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:stage ii sporulation protein e; PDBTitle: structure of the phosphatase domain of the cell fate determinant2 spoiie from bacillus subtilis (mn presoaked)
22 | c3ke6A_ |
| not modelled | 98.8 | 12 | PDB header:unknown function Chain: A: PDB Molecule:protein rv1364c/mt1410; PDBTitle: the crystal structure of the rsbu and rsbw domains of rv1364c from2 mycobacterium tuberculosis
23 | c3es2A_ |
| not modelled | 98.7 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of the c-terminal phosphatase domain of p.2 aeruginonsa rssb
24 | c3eq2A_ |
| not modelled | 28.8 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
25 | c1rfoC_ |
| not modelled | 10.1 | 25 | PDB header:viral protein Chain: C: PDB Molecule:whisker antigen control protein; PDBTitle: trimeric foldon of the t4 phagehead fibritin
26 | c3iddA_ |
| not modelled | 6.7 | 20 | PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728
27 | c3m8yC_ |
| not modelled | 5.7 | 25 | PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
28 | c3q4fG_ |
| not modelled | 5.6 | 14 | PDB header:dna binding protein/protein binding Chain: G: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of xrcc4/xlf-cernunnos complex
29 | c3mudA_ |
| not modelled | 5.4 | 14 | PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
30 | c2zktB_ |
| not modelled | 5.4 | 17 | PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii
31 | c3sr2A_ |
| not modelled | 5.4 | 14 | PDB header:dna binding protein/protein binding Chain: A: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of human xlf-xrcc4 complex
32 | d1ik9a1 |
| not modelled | 5.3 | 14 | Fold:XRCC4, N-terminal domain Superfamily:XRCC4, N-terminal domain Family:XRCC4, N-terminal domain
33 | c1avyA_ |
| not modelled | 5.3 | 25 | PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4)

Binding site prediction |

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0