16/01/2012 12:59:24 : INFO  : Run start: Mon Jan 16 12:59:22 GMT 2012
16/01/2012 12:59:34 : INFO  : Initialised job
16/01/2012 12:59:37 : INFO  : Renaming log file 'phyre2_20120116_125920.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/phyre_20120116_125920.log'
16/01/2012 12:59:40 : INFO  : Initialised job:
Sequence
>batch____
MSWRLVYASTVGTSHISADLPCQDACQMQIAWLNDQQPLLSVFVADGAGSVSQGGEGAML
AVNEAMAYMSQKVQGGELGLNDVLATNMVLTIRQRLFAEAEAKELAVRDFACTFLGLISS
PDGTLIMQIGDGGVVVDLGHGLQLPLTPMAGEYANMTHFITDEDAVSRLETFTSTGRAHK
VAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLAAATQEQLDLLPELLKQFLSSPAVNERT
DDDKTLALALWAE

16/01/2012 12:59:42 : INFO  : Checked sequence
16/01/2012 12:59:49 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 12:59:51 : INFO  : PSI-BLAST 3 iterations
16/01/2012 13:01:13 : INFO  : PSI-BLAST 5 iterations
16/01/2012 13:02:55 : INFO  : Finished PSI-BLAST
16/01/2012 13:02:59 : INFO  : Running Buildali to generate a3m file
16/01/2012 13:12:22 : INFO  : Converting to HMM
16/01/2012 13:12:27 : INFO  : Calibrating HMM
16/01/2012 13:12:46 : INFO  : Searching HMM database
16/01/2012 13:17:32 : INFO  : Finished buildali
16/01/2012 13:17:35 : INFO  : Predicting secondary structure
16/01/2012 13:17:50 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 13:17:55 : INFO  : Predicting Disordered regions
16/01/2012 13:18:02 : INFO  : Predicted Disorder (Disopred)
16/01/2012 13:18:06 : INFO  : Running memsat_svm check
16/01/2012 13:18:31 : INFO  : Globular protein
16/01/2012 13:18:33 : INFO  : Predicted Transmembrane (memsat_svm) ID '4eecc6d5947d364b'
16/01/2012 13:18:36 : INFO  : Initialising fold library search
16/01/2012 13:18:41 : INFO  : Initialised search input
16/01/2012 13:18:45 : INFO  : Building Ensemble models
16/01/2012 13:18:50 : INFO  : Building hh.c1a6qA_.model.1.pdb
16/01/2012 13:19:15 : INFO  : Building hh.d1txoa_.model.2.pdb
16/01/2012 13:19:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/hh.d1txoa_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/d1txoa_.2.pdb
16/01/2012 13:19:47 : INFO  : Building hh.c2pk0C_.model.3.pdb
16/01/2012 13:20:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/hh.c2pk0C_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/c2pk0C_.3.pdb
16/01/2012 13:20:16 : INFO  : Building hh.d1a6qa2.model.4.pdb
16/01/2012 13:20:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/hh.d1a6qa2.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/d1a6qa2.4.pdb
16/01/2012 13:20:43 : INFO  : Building hh.c3kdjB_.model.5.pdb
16/01/2012 13:21:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/hh.c3kdjB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/c3kdjB_.5.pdb
16/01/2012 13:21:09 : INFO  : Building hh.c2i44A_.model.6.pdb
16/01/2012 13:21:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/hh.c2i44A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4eecc6d5947d364b/c2i44A_.6.pdb
16/01/2012 13:21:38 : INFO  : Building c1a6qA_.1.pdb
16/01/2012 13:22:03 : INFO  : Building d1txoa_.2.pdb
16/01/2012 13:22:25 : INFO  : Building c2pk0C_.3.pdb
16/01/2012 13:22:49 : INFO  : Building d1a6qa2.4.pdb
16/01/2012 13:23:13 : INFO  : Building c3kdjB_.5.pdb
16/01/2012 13:23:36 : INFO  : Building c2i44A_.6.pdb
16/01/2012 13:23:59 : INFO  : Building c2cm1A_.7.pdb
16/01/2012 13:24:21 : INFO  : Building c3kb3B_.8.pdb
16/01/2012 13:24:45 : INFO  : Building c2jfsA_.9.pdb
16/01/2012 13:25:09 : INFO  : Building c2i0oA_.10.pdb
16/01/2012 13:25:33 : INFO  : Building c2iq1A_.11.pdb
16/01/2012 13:25:57 : INFO  : Building c2irmA_.12.pdb
16/01/2012 13:26:19 : INFO  : Building c2isnB_.13.pdb
16/01/2012 13:26:43 : INFO  : Building c2pnqA_.14.pdb
16/01/2012 13:27:07 : INFO  : Building c2j82A_.15.pdb
16/01/2012 13:27:31 : INFO  : Building c2pomA_.16.pdb
16/01/2012 13:27:55 : INFO  : Building c2j4oA_.17.pdb
16/01/2012 13:28:19 : INFO  : Building c3rnrB_.18.pdb
16/01/2012 13:28:41 : INFO  : Building c3d8kD_.19.pdb
16/01/2012 13:29:04 : INFO  : Building c3pu9A_.20.pdb
16/01/2012 13:31:59 : INFO  : Finished HH model building
16/01/2012 13:32:02 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 13:33:27 : INFO  : html domain output complete ID '4eecc6d5947d364b'
16/01/2012 14:52:27 : INFO  : Run end  : Mon Jan 16 14:52:25 GMT 2012
