BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (88 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 181 4e-45 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 140 1e-32 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 94 1e-18 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 93 3e-18 UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=... 65 9e-10 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 52 6e-06 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 52 8e-06 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 52 8e-06 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 51 1e-05 UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 51 1e-05 UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass... 50 2e-05 UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass... 49 4e-05 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 49 5e-05 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 49 7e-05 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 48 9e-05 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 48 9e-05 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 48 9e-05 UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ... 47 1e-04 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 47 1e-04 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 47 2e-04 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 46 3e-04 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 46 4e-04 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 45 8e-04 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 45 0.001 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 44 0.001 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 44 0.001 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 44 0.002 UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ... 44 0.002 UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop... 44 0.002 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 44 0.002 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 43 0.003 UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3... 43 0.003 UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 42 0.004 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 42 0.005 UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=... 42 0.006 UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=... 42 0.006 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.007 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 42 0.007 UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1... 41 0.011 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 41 0.012 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 41 0.013 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 41 0.013 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.016 UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=... 40 0.018 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.019 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 40 0.020 UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto... 40 0.022 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 40 0.023 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.024 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 40 0.024 UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.034 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 39 0.035 UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.039 UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa... 39 0.043 UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5... 39 0.044 UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.050 UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.050 UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum... 39 0.059 UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p... 39 0.060 UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1... 39 0.061 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 39 0.066 UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.068 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 39 0.076 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 38 0.082 UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ... 38 0.090 UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ... 38 0.091 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 38 0.092 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC Sbjct: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 IHCQQEKDLQKPAYTGYNRRGSKDSQLR Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/88 (75%), Positives = 76/88 (86%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL CEEC A IP+ARR+AIPGVRLC Sbjct: 1 MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ E D + AY+GYNRRGSKDSQLR Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/91 (58%), Positives = 60/91 (65%), Gaps = 3/91 (3%) Query: 1 MASGWANDDAVNEQINSTIEDAIARAR-GEIPRG--ESLDECEECGAPIPQARREAIPGV 57 MA GWA DDAVNEQI + ++AI R R RG ES CEEC PIP+ARR AIPGV Sbjct: 1 MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60 Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 RLC+ CQ +D G NRRGSKDSQL+ Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRL 59 MA+G+ D V EQI++T+ DAI RAR + + + C ECG IP+ARR IPGV L Sbjct: 1 MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60 Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 C+ CQ ++D ++ A++ YNRR SKDSQLR Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89 >UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2 Tax=Proteobacteria RepID=Q0BZ89_HYPNA Length = 87 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 1/88 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWA + +V +QI ++ DA+A AR +P G L+ECEECG IP ARR A+ G R C Sbjct: 1 MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ ++ Q P ++ NRRG+KDSQLR Sbjct: 61 VSCQSVREKQ-PKFSSINRRGNKDSQLR 87 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D V +++ E I +AR S CE C PIP+ARR A+PGV LC+ CQ+ K+ Sbjct: 6 DLVQQRVEEERERHIHKARSR-QAAPSRFLCESCNGPIPEARRAALPGVELCVTCQEIKE 64 Query: 69 LQKPAYTG 76 L+ Y G Sbjct: 65 LKSLHYKG 72 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 28/38 (73%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 CEEC APIP+ARR AIPGV+ C+ CQ+ +L+ Y G Sbjct: 35 CEECDAPIPEARRRAIPGVQCCVTCQEILELKSKHYNG 72 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 9 DAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D N+ + +AR G+ +G SL CEEC PIP+ARR +PGVRLC+ CQ Sbjct: 5 DRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/33 (66%), Positives = 26/33 (78%) Query: 33 GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 GESL ECE+CG IP ARRE +PGVR C+ CQ+ Sbjct: 27 GESLYECEDCGEEIPVARRELVPGVRKCLSCQE 59 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 10 AVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 +V EQ+ T I R R +I G + CE CG PIP+ARR+ PGV LC+ CQ ++ Sbjct: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 Query: 69 LQKPAY 74 Q+ Y Sbjct: 67 RQRKHY 72 >UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=A8R990_9CAUD Length = 85 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59 MA G+A D A ++ + ++ AI AR ++ ES C +C IP+ARR+AI GV Sbjct: 1 MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60 Query: 60 CIHCQQEKD 68 CI CQ D Sbjct: 61 CIGCQSMHD 69 >UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=Q6U9H2_9CAUD Length = 84 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA G+ ++ ++ IN+ +++A+ R +G++ + CEEC PIP+ARR AI C Sbjct: 1 MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAI-STAYC 59 Query: 61 IHCQQEKD 68 + CQ D Sbjct: 60 VQCQTVHD 67 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%) Query: 20 EDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 E AIA AR + RG S ECE+CG PIP AR+ A PG C+ CQ ++ Sbjct: 16 EAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQNRRE 64 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 30/56 (53%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D E +E A+A P ESL CEECG PIP+ RR+A PG C+ CQ Sbjct: 6 DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRCVRCQ 61 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D NE + + ++ +A AR + ES ++CE+CG PIPQARR A PG CI CQ Sbjct: 6 DHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQ 60 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%) Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 P S CEEC APIP+ARR A+PGV LCI CQ+ +++ G Sbjct: 27 PASPSRFLCEECDAPIPEARRMAVPGVALCITCQEIAEMKNKHVRG 72 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYN 78 D I R R ++ G S C++CGAP+P RR IPGVR C+ CQ+ +++Q Y + Sbjct: 18 DRIQRIRQQLT-GISALFCDDCGAPVPAERRRLIPGVRKCVGCQEVQEIQARHYRRWQ 74 >UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD Length = 213 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 18/87 (20%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ------ 65 +E+ + +EDA++R R +G + +CE CG PIP R EAIP R C+ C++ Sbjct: 68 DERALADVEDALSRIR----QG-TYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122 Query: 66 -------EKDLQKPAYTGYNRRGSKDS 85 E+D+ PA+ ++R G+ ++ Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 25/34 (73%) Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 S + C ECGAPIP+ RR A+PGV LC+ CQ K+ Sbjct: 32 SRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%) Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 P+G+S C +CG IP RRE +PGV+ CI CQ+E++ Sbjct: 8 PKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERE 45 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + +ARA+ + R ES EC ECG PIP+ARR+ + G + C HCQ DL+K Sbjct: 20 LANQLARAKPKASR-ESAQECGECGDPIPEARRQHMTGCQYCTHCQ--SDLEK 69 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE E A+A+ R + P SL CE+C PIP+ARR+ + G CI CQQ + Sbjct: 6 DRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQIYE 64 Query: 69 LQKPAY 74 ++ Y Sbjct: 65 YKQKGY 70 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%) Query: 22 AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 A R +G + R C +CG IP +RRE+IPGV LC++CQ+ Sbjct: 27 AALRIKGHVSRRH----CRDCGDEIPDSRRESIPGVSLCMYCQE 66 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%) Query: 24 ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 AR+RG +L +C++CG PIP+ARR+A+PG C+ CQ+ Sbjct: 23 ARSRGS---QSTLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I ++R + SL C CG PIP+ RR+ +PG+ C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57 Query: 61 IHCQQE 66 CQ++ Sbjct: 58 KECQEK 63 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 20 EDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 +D IARA G+I +G C CG PI +ARR+A+P C+ CQ+ ++ ++ G Sbjct: 17 DDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDCQESRERWSRSHRG 72 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I + R + SL C CG PIP+ RR+ +PGV C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57 Query: 61 IHCQ 64 CQ Sbjct: 58 TECQ 61 >UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales RepID=C1DXT7_SULAA Length = 144 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 23/31 (74%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 CEECGA I + R EAIP VRLCI C Q +++ Sbjct: 80 CEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110 >UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQT2_9PLAN Length = 134 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62 D+ ++++S + + +R +I RG S ECE C IP AR +A+P LCI Sbjct: 50 DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109 Query: 63 CQQEKDLQKPAYTGYNRRGSKDSQL 87 CQ+E L++ G + R + + Q+ Sbjct: 110 CQRE--LEELGEDGVSWRQNSEDQV 132 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 19 IEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQ--EKDLQKPAYT 75 +E+ IA R E+ G SL CE CG I + RR+ +PGV+LC+ CQ+ E Q T Sbjct: 18 LEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLCVGCQEVAEHWEQVRCIT 77 Query: 76 GYNRRG 81 G +R G Sbjct: 78 GGHRGG 83 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 ++ IA + + S CE+C APIP+ RR+ I GV C+ CQQ ++Q+ + Sbjct: 14 MQREIALKKHRTFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVTCQQRFEIQQRNF 69 >UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella RepID=Q0HYS5_SHESR Length = 68 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%) Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 +A+ P S +C ECG IP+ RR+AI GVRLC+ CQ ++ Q Sbjct: 23 KAQAAKPVPPSATDCAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D E+ + IA+AR + P S C C A IP+ RR +PGV C+ CQQ + Sbjct: 6 DIAQERQEMLLAMQIAKARSK-PITASAFICASCEAEIPEQRRITVPGVIFCVACQQLHE 64 Query: 69 LQKPAYTG 76 +K Y G Sbjct: 65 EKKKHYRG 72 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 15/24 (62%), Positives = 20/24 (83%) Query: 42 CGAPIPQARREAIPGVRLCIHCQQ 65 CG PIP+ RR+A+PGV+ C+ CQQ Sbjct: 48 CGEPIPEQRRKALPGVKFCVECQQ 71 >UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas putida KT2440 RepID=Q88IG2_PSEPK Length = 72 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 D + AR P ESL++C CG IP+ RR A+ G + CI CQ + + Y G Sbjct: 17 DLVLSARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQGFFEKKGARYAG 72 >UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FUG7_PSYA2 Length = 66 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 7/58 (12%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGE--SLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D N+ ++ T+ ++RA P+ + SL EC ECG IP A+R+A+ GV LC+ CQ Sbjct: 6 DRANDYVDLTMAHCLSRA----PKFDKPSLTECMECGEDIP-AKRQAMGGVTLCVDCQ 58 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQ-EKDLQK 71 C+ CG IP+ARR A+PGV LC+ CQ+ E+ L K Sbjct: 39 CDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE+ + ++ A+A+ R S CE+CG IP+ARR+A PG CI CQ+ ++ Sbjct: 5 DQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63 >UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEV8_RALME Length = 123 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 G DA+ E +ED IA ARG + G S C EC PIP R +A P + C C Sbjct: 54 GQRQADAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTAC 111 Query: 64 QQEKDLQK 71 Q+E + ++ Sbjct: 112 QREHEQKR 119 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 33 GESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 G+S CE CG IP R++AIPGVR C CQ+ ++++ Y Sbjct: 45 GKSRKRCECCGNRIPLRRQQAIPGVRTCTECQRVLEIRQKQY 86 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + + + +++ + IP S C++C + IP+ARR ++PGVRLC+ C ++ Sbjct: 10 DVIEQHLTASLANRKHNINPAIP---SAKHCDDCESEIPEARRRSLPGVRLCVDCASLQE 66 Query: 69 LQ 70 ++ Sbjct: 67 IK 68 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 11 VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + EQ + A R ES + E CG PIP+ RR A+ G R C+ CQ+ ++ Sbjct: 10 IEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVECQERRE 67 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D E+ +E IA AR + + S C +C IP+ RR AIPGV C+ CQ+ + Sbjct: 6 DMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSE 64 Query: 69 LQKPAY 74 Q+ + Sbjct: 65 AQQRHF 70 >UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio vulgaris RepID=Q72G22_DESVH Length = 176 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 22/37 (59%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 CE CG IP AR +A P RLC+ CQQE + A T Sbjct: 131 CEGCGEDIPVARLKASPATRLCVFCQQESECAPVAAT 167 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 + DA+ + + IE+A+ R R CE+CG PIP+ R E +P R C+ Sbjct: 52 TALVQADALRQTLED-IEEALLRLRQG-----RYGLCEKCGKPIPEGRLEILPYARCCVS 105 Query: 63 CQQEK 67 CQQ + Sbjct: 106 CQQRR 110 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 28/56 (50%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D EQ ++ A+ + R S CE+C PIP+ RR AI G CIHCQ Sbjct: 6 DRATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIHCQ 61 >UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3M6_ACIBC Length = 66 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Query: 9 DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D E + ++ IA R R E GES EC ECG IP+ RR A+ GV+ CI CQ Sbjct: 6 DKAQESADYLLQQEIANRCRFE---GESEKECVECGEEIPE-RRRALGGVKFCIECQ 58 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 22/32 (68%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 CE CGA IP AR+ A+PGV LC CQ K+ Q Sbjct: 39 CECCGADIPAARQLAVPGVELCAACQDVKEKQ 70 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D++V Q + + RA + S C CG IP+ RR+A+ GV+LCI CQ Sbjct: 5 DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 20/35 (57%) Query: 30 IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 IP ECE+CG PIP+ARR A P C CQ Sbjct: 25 IPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQ 59 >UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM Length = 203 Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 N+ + +E+A+ + +I CE CG PIP+ R +A+P C+ C++ Sbjct: 69 NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKK 117 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 EQ+ + +ARA+ G +EC ECG PIP ARR +P C CQ + ++ Sbjct: 14 EQMQRDVAIELARAQCH---GAGAEECVECGEPIPAARRACVPYATRCTECQGRFEQRR- 69 Query: 73 AYTGYNR 79 TGY R Sbjct: 70 --TGYPR 74 >UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4 Length = 242 Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D A+NE + D I A I G S +CE CG IP R EAIP R CI +EK Sbjct: 64 DIALNEHSEQLL-DEIDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQHAEEK 121 Query: 68 DL 69 + Sbjct: 122 SV 123 >UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2 Tax=Cystobacterineae RepID=Q1D0G7_MYXXD Length = 130 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 20/35 (57%) Query: 34 ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 ++ ECEECG IP R A+P C+ CQ KD Sbjct: 81 DAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115 >UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium RepID=A3DD29_CLOTH Length = 212 Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 I A ++ +G S +CE CG I + R EA+P RLCI C+ K+ Sbjct: 77 INEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121 >UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZJ9_DESAD Length = 115 Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 +EDA+ R + + ECEECG IP AR +P R C++C Sbjct: 69 LEDALNR----LEKDSFFGECEECGEDIPLARLLTLPESRYCVYC 109 >UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO Length = 103 Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust. Identities = 15/29 (51%), Positives = 18/29 (62%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEK 67 CE CG IP AR E +P R C+ CQQ + Sbjct: 75 CERCGQDIPTARLEILPSARFCVPCQQRR 103 >UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WA51_MAGSA Length = 74 Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 20/42 (47%) Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 P GES C CG IP RR A+PG C C Q+ P Sbjct: 29 PTGESAYFCRSCGERIPDERRAAVPGTNHCTFCAQQITAASP 70 >UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage gene n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EIS7_ALISL Length = 71 Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 25/35 (71%) Query: 34 ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 +S +EC EC IP+AR+EA+ G + C++CQ+ D Sbjct: 33 KSAEECIECEKAIPKARQEAVKGCQYCVNCQELAD 67 >UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V43_DESDG Length = 149 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 22/30 (73%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKD 68 CEECG I +AR +A P LCIHCQ++++ Sbjct: 105 CEECGDEIGEARLKANPTTTLCIHCQEDRE 134 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 12/79 (15%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE------------CEECGAPIPQA 49 A G +D+A N T E +A A G R E + CE CG PI +A Sbjct: 152 ADGAGDDEADTGTKNVTREHELALAAGSRERLEQTERALLRMDAGTYGVCENCGKPIGKA 211 Query: 50 RREAIPGVRLCIHCQQEKD 68 R +A P LC+ C+Q+ + Sbjct: 212 RMQAFPHAILCVDCKQKSE 230 >UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C120_SPHTD Length = 130 Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 I RA ++ +GE CE C PIP R EA+P R CI CQ + D Sbjct: 78 IERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMD 122 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 S + CEECG IP+ RR A+PG + C CQ +L+ Sbjct: 30 SAERCEECGEDIPEPRRAAVPGCQTCSECQSVIELK 65 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust. Identities = 14/30 (46%), Positives = 21/30 (70%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKD 68 CE CG PI +AR +A P LC+ C+Q+++ Sbjct: 207 CENCGNPIGKARMQAFPRATLCVECKQKQE 236 >UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2J7_9PLAN Length = 148 Score = 38.1 bits (87), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62 D ++INS + + +R I R + CE C PIP R +A+P +CI Sbjct: 49 DTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVMCIK 108 Query: 63 CQQE 66 CQ+E Sbjct: 109 CQRE 112 >UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7U4_AMMDK Length = 176 Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 IEDA+ R + G + CE CGAPIP+ R EA+P LC C++ ++ Sbjct: 52 VIEDALRR----LEEG-TYGYCESCGAPIPRERLEAVPYTTLCHACKERQE 97 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 +A+ P+ S C++CG IP+ARR A G + CI CQ+ + K Y Sbjct: 23 QAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERIEHAKAQYA 73 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 126 2e-28 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 120 2e-26 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 109 4e-23 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 100 2e-20 UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass... 87 2e-16 UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=... 81 1e-14 UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop... 77 2e-13 UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 76 3e-13 UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass... 76 3e-13 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 76 3e-13 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 76 4e-13 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 75 5e-13 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 73 2e-12 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 72 5e-12 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 71 8e-12 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 70 2e-11 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 69 3e-11 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 69 5e-11 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 67 2e-10 UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ... 66 5e-10 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 65 9e-10 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 64 2e-09 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 61 1e-08 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 61 2e-08 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 59 5e-08 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 58 9e-08 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 57 2e-07 UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ... 56 4e-07 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 56 4e-07 Sequences not found previously or not previously below threshold: UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 67 2e-10 UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B... 66 4e-10 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 64 1e-09 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 62 6e-09 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 61 2e-08 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 61 2e-08 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 59 6e-08 UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD 58 1e-07 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 58 1e-07 UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ... 57 1e-07 UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=... 56 3e-07 UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5... 56 4e-07 UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri... 55 9e-07 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 54 2e-06 UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob... 54 2e-06 UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba... 54 2e-06 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=... 53 3e-06 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi... 53 3e-06 UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ... 52 5e-06 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 52 5e-06 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 52 6e-06 UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=... 52 6e-06 UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ... 52 7e-06 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 52 7e-06 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 52 7e-06 UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1... 52 8e-06 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 52 8e-06 UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12... 51 9e-06 UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ... 51 1e-05 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 51 1e-05 UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr... 51 1e-05 UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ... 51 2e-05 UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ... 51 2e-05 UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa... 51 2e-05 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 50 2e-05 UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1... 50 2e-05 UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ... 50 2e-05 UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot... 50 2e-05 UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ... 50 2e-05 UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ... 50 2e-05 UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel... 50 2e-05 UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID... 50 2e-05 UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ... 50 2e-05 UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu... 50 2e-05 UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom... 50 3e-05 UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3... 50 3e-05 UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim... 50 3e-05 UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact... 50 3e-05 UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac... 50 3e-05 UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT... 50 3e-05 UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm... 50 3e-05 UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n... 49 3e-05 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 49 3e-05 UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ... 49 4e-05 UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=... 49 4e-05 UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ... 49 4e-05 UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi... 49 5e-05 UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo... 49 6e-05 UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a... 49 6e-05 UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete... 49 7e-05 UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot... 49 7e-05 UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ... 49 7e-05 UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ... 48 8e-05 UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1... 48 8e-05 UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi... 48 8e-05 UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ... 48 1e-04 UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ... 48 1e-04 UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ... 48 1e-04 UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ... 48 1e-04 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 48 1e-04 UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ... 48 1e-04 UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ... 47 1e-04 UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11... 47 1e-04 UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ... 47 1e-04 UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami... 47 1e-04 UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14... 47 2e-04 UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro... 47 2e-04 UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ... 47 2e-04 UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ... 47 2e-04 UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc... 47 2e-04 UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ... 47 2e-04 UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbi... 47 2e-04 UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge... 47 2e-04 UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p... 47 2e-04 UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ... 47 2e-04 UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro... 47 2e-04 UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib... 47 2e-04 UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 ... 46 3e-04 UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 ... 46 3e-04 UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10... 46 3e-04 UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3... 46 3e-04 UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1... 46 3e-04 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 46 3e-04 UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ... 46 3e-04 UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ... 46 3e-04 UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1... 46 3e-04 UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm... 46 3e-04 UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 ... 46 3e-04 UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium... 46 3e-04 UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term... 46 3e-04 UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1... 46 4e-04 UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ... 46 4e-04 UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ... 46 4e-04 UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep... 46 4e-04 UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1... 46 4e-04 UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum... 46 4e-04 UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono... 46 4e-04 UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwell... 46 4e-04 UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ... 46 4e-04 UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R... 46 4e-04 UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ... 46 4e-04 UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ... 46 4e-04 UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr... 46 4e-04 UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ... 46 5e-04 UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10... 46 5e-04 UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ... 46 5e-04 UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ... 46 5e-04 UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ... 46 5e-04 UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon... 46 5e-04 UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus ... 46 5e-04 UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1... 46 5e-04 UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto... 46 5e-04 UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax... 45 6e-04 UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ... 45 6e-04 UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro... 45 6e-04 UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ... 45 7e-04 UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID... 45 7e-04 UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=... 45 7e-04 UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr... 45 7e-04 UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ... 45 7e-04 UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi... 45 7e-04 UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ... 45 7e-04 UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto... 45 7e-04 UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ... 45 7e-04 UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ... 45 8e-04 UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 ... 45 8e-04 UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc... 45 8e-04 UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re... 45 8e-04 UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac... 45 9e-04 UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida... 45 9e-04 UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 45 9e-04 UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R... 45 0.001 UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.001 UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy... 44 0.001 UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr... 44 0.001 UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto... 44 0.001 UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3... 44 0.001 UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.001 UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.001 UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep... 44 0.001 UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 ... 44 0.001 UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ... 44 0.001 UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens... 44 0.002 UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.002 UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax... 44 0.002 UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ... 44 0.002 UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo... 44 0.002 UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2... 44 0.002 UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.002 UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte... 44 0.002 UniRef50_Q2BI57 Zn-finger, prokaryotic DksA/TraR C4 type n=1 Tax... 43 0.002 UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ... 43 0.002 UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter... 43 0.002 UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ... 43 0.003 UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family prot... 43 0.003 UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253... 43 0.003 UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega... 43 0.003 UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther... 43 0.003 UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil... 43 0.003 UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Maripro... 43 0.003 UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ... 43 0.003 UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ... 43 0.003 UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ... 43 0.003 UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ... 43 0.003 UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ... 43 0.004 UniRef50_A1SED9 Putative DnaK suppressor protein n=1 Tax=Nocardi... 43 0.004 UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Strepto... 43 0.004 UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax... 42 0.004 UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 ... 42 0.004 UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7... 42 0.004 UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.004 UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1... 42 0.004 UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13... 42 0.004 UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4... 42 0.004 UniRef50_A4F8B9 Possible suppressor protein DnaK n=6 Tax=Actinom... 42 0.004 UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte... 42 0.005 UniRef50_C5CLF2 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.005 UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.005 UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ... 42 0.005 UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus ... 42 0.005 UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ... 42 0.005 UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact... 42 0.005 UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbac... 42 0.005 UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1... 42 0.005 UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu... 42 0.005 UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.006 UniRef50_Q3Z6R5 DnaK suppressor protein, putative n=5 Tax=Dehalo... 42 0.006 UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitroco... 42 0.006 UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact... 42 0.006 UniRef50_A4FJQ8 Putative uncharacterized protein n=1 Tax=Sacchar... 42 0.006 UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.007 UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom... 42 0.007 UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.007 UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro... 42 0.007 UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.007 UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 ... 42 0.008 UniRef50_C9NIY3 Transcriptional regulator, TraR/DksA family n=3 ... 42 0.008 UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 42 0.008 UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.008 UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph... 42 0.008 UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.010 UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati... 41 0.010 UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.010 UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo... 41 0.010 UniRef50_UPI0001B515E7 hypothetical protein SvirD4_35899 n=1 Tax... 41 0.010 UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria... 41 0.012 UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ... 41 0.013 UniRef50_A4XRJ7 Transcriptional regulator, TraR/DksA family n=8 ... 41 0.013 UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini... 41 0.014 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC Sbjct: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 IHCQQEKDLQKPAYTGYNRRGSKDSQLR Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 66/88 (75%), Positives = 76/88 (86%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL CEEC A IP+ARR+AIPGVRLC Sbjct: 1 MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ E D + AY+GYNRRGSKDSQLR Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 109 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRL 59 MA+G+ D V EQI++T+ DAI RAR + + + C ECG IP+ARR IPGV L Sbjct: 1 MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60 Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 C+ CQ ++D ++ A++ YNRR SKDSQLR Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 3/91 (3%) Query: 1 MASGWANDDAVNEQINSTIEDAIARAR---GEIPRGESLDECEECGAPIPQARREAIPGV 57 MA GWA DDAVNEQI + ++AI R R + ES CEEC PIP+ARR AIPGV Sbjct: 1 MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60 Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 RLC+ CQ +D G NRRGSKDSQL+ Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91 >UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=Q6U9H2_9CAUD Length = 84 Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA G+ ++ ++ IN+ +++A+ R +G++ + CEEC PIP+ARR AI C Sbjct: 1 MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAI-STAYC 59 Query: 61 IHCQQEKD 68 + CQ D Sbjct: 60 VQCQTVHD 67 >UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2 Tax=Proteobacteria RepID=Q0BZ89_HYPNA Length = 87 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWA + +V +QI ++ DA+A AR +P G L+ECEECG IP ARR A+ G R C Sbjct: 1 MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ ++ ++P ++ NRRG+KDSQLR Sbjct: 61 VSCQSVRE-KQPKFSSINRRGNKDSQLR 87 >UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQT2_9PLAN Length = 134 Score = 76.7 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62 D+ ++++S + + +R +I RG S ECE C IP AR +A+P LCI Sbjct: 50 DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109 Query: 63 CQQEKDLQKPAYTGYNRRGSKDSQL 87 CQ ++L++ G + R + + Q+ Sbjct: 110 CQ--RELEELGEDGVSWRQNSEDQV 132 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59 M+ +V EQ+ T I R R +I G + CE CG PIP+ARR+ PGV L Sbjct: 1 MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 Query: 60 CIHCQQEKDLQKPAYT 75 C+ CQ ++ Q+ Y Sbjct: 58 CVECQAYQERQRKHYA 73 >UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=A8R990_9CAUD Length = 85 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59 MA G+A D A ++ + ++ AI AR ++ ES C +C IP+ARR+AI GV Sbjct: 1 MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60 Query: 60 CIHCQQEKD 68 CI CQ D Sbjct: 61 CIGCQSMHD 69 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I ++R + SL C CG PIP+ RR+ +PG+ C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57 Query: 61 IHCQQEKDLQK 71 CQ++ + Sbjct: 58 KECQEKLERHS 68 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D V +++ E I +AR S CE C PIP+ARR A+PGV LC+ CQ+ K+ Sbjct: 6 DLVQQRVEEERERHIHKARSRQA-APSRFLCESCNGPIPEARRAALPGVELCVTCQEIKE 64 Query: 69 LQKPAYTG 76 L+ Y G Sbjct: 65 LKSLHYKG 72 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 75.2 bits (183), Expect = 5e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I + R + SL C CG PIP+ RR+ +PGV C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57 Query: 61 IHCQQEKDLQKP 72 CQ + ++ Sbjct: 58 TECQAIIERRQR 69 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 73.3 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE E A+A+ R + P SL CE+C PIP+ARR+ + G CI CQQ + Sbjct: 6 DRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQIYE 64 Query: 69 LQKPAYT 75 ++ Y Sbjct: 65 YKQKGYR 71 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 72.1 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA D E +E A+A P ESL CEECG PIP+ RR+A PG C Sbjct: 1 MADEI---DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRC 57 Query: 61 IHCQQEKD 68 + CQ + Sbjct: 58 VRCQSGIE 65 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 71.3 bits (173), Expect = 8e-12, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA + + + D I R R ++ G S C++CGAP+P RR IPGVR C Sbjct: 1 MADEIERFQSHQAMLEA---DRIQRIRQQL-TGISALFCDDCGAPVPAERRRLIPGVRKC 56 Query: 61 IHCQQEKDLQKPAYTGYN 78 + CQ+ +++Q Y + Sbjct: 57 VGCQEVQEIQARHYRRWQ 74 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 70.2 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 9 DAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D N+ + +AR G+ +G SL CEEC PIP+ARR +PGVRLC+ CQ Sbjct: 5 DRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQTRI 64 Query: 68 DLQKP 72 + Sbjct: 65 EQLAR 69 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + E I AR P S CEEC APIP+ARR A+PGV LCI CQ+ + Sbjct: 6 DLAQAREQEDRERHIHHARRR-PASPSRFLCEECDAPIPEARRMAVPGVALCITCQEIAE 64 Query: 69 LQKPAYTG 76 ++ G Sbjct: 65 MKNKHVRG 72 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 68.6 bits (166), Expect = 5e-11, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + E I+ AR S CEEC APIP+ARR AIPGV+ C+ CQ+ + Sbjct: 6 DLAQLREQEDRERHISNARSRR-HEVSAFICEECDAPIPEARRRAIPGVQCCVTCQEILE 64 Query: 69 LQKPAYTG 76 L+ Y G Sbjct: 65 LKSKHYNG 72 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 34/67 (50%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E E AIA AR + RG S ECE+CG PIP AR+ A PG C+ CQ Sbjct: 2 DPFDRAQELEMEQREAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQN 61 Query: 66 EKDLQKP 72 ++ + Sbjct: 62 RRERPRR 68 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D E+ + IA+AR + S C C A IP+ RR +PGV C+ CQQ + Sbjct: 6 DIAQERQEMLLAMQIAKARSKPITA-SAFICASCEAEIPEQRRITVPGVIFCVACQQLHE 64 Query: 69 LQKPAYTGY 77 +K Y G Sbjct: 65 EKKKHYRGI 73 >UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH Length = 73 Score = 65.9 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D EQ ++ I G G S ECE+CG IP+ RR A+ G C CQ + Sbjct: 6 DLACEQSQLLLDKQIKAVTGR-YIGVSAFECEDCGREIPEKRRIAVMGCTRCADCQTVYE 64 Query: 69 LQKPAYTGY 77 L+ Y Sbjct: 65 LKSKHYRSV 73 >UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD Length = 213 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 18/87 (20%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ------ 65 +E+ + +EDA++R R + +CE CG PIP R EAIP R C+ C++ Sbjct: 68 DERALADVEDALSRIRQ-----GTYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122 Query: 66 -------EKDLQKPAYTGYNRRGSKDS 85 E+D+ PA+ ++R G+ ++ Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D +D IARA G+I +G C CG PI +ARR+A+P C+ CQ+ ++ Sbjct: 6 DEAQALEERERDDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDCQESRE 64 Query: 69 LQKPAYTG 76 ++ G Sbjct: 65 RWSRSHRG 72 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 64.0 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D E+ +E IA AR + + S C +C IP+ RR AIPGV C+ CQ+ + Sbjct: 6 DMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSE 64 Query: 69 LQKPAY 74 Q+ + Sbjct: 65 AQQRHF 70 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 63.6 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE + + ++ +A AR + ES ++CE+CG PIPQARR A PG CI CQ + Sbjct: 6 DHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQDRHE 64 Query: 69 LQ 70 + Sbjct: 65 RR 66 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 62.1 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + E A+ + R + S CE+C APIP+ RR+ I GV C+ CQQ + Sbjct: 6 DRAQQLEEMQREIALKKHRT--FKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVTCQQRFE 63 Query: 69 LQKPAYT 75 +Q+ + Sbjct: 64 IQQRNFR 70 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 30 IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 P+G+S C +CG IP RRE +PGV+ CI CQ+E++ Y Sbjct: 7 QPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D EQ ++ A+ + R S CE+C PIP+ RR AI G CIHCQ ++ Sbjct: 6 DRATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIHCQSLRE 65 Query: 69 LQK 71 ++ Sbjct: 66 QRR 68 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D + I + ++A + I P S C++C + IP+ARR ++PGVRLC+ C + Sbjct: 6 DQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVDCASLQ 65 Query: 68 DLQKPAYT 75 +++ Sbjct: 66 EIKGRHQR 73 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 9 DAVNEQINSTIEDAI-ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D N+ + + + +R + GESL ECE+CG IP ARRE +PGVR C+ CQ+ Sbjct: 5 DIANDYAERELAERLYSRVK---YVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYL 61 Query: 68 D 68 + Sbjct: 62 E 62 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 59.0 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E +I AR +L +C++CG PIP+ARR+A+PG C+ CQ+ Sbjct: 3 DPTDRAQEAAADYTRFSIEAARSR-GSQSTLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61 Query: 66 EKDLQK 71 + ++ Sbjct: 62 TYEQRR 67 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 58.6 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRG-ESLDECEECGAPIPQARREAIPGVRL 59 M+ D +E+ IA R E+ G SL CE CG I + RR+ +PGV+L Sbjct: 1 MSDDID-DTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQL 59 Query: 60 CIHCQQEKDLQK 71 C+ CQ+ + + Sbjct: 60 CVGCQEVAEHWE 71 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 58.2 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + + + +ARA+ + R ES EC ECG PIP+ARR+ + G + C HCQ + + Sbjct: 10 DIEAQLTEVALANQLARAKPKASR-ESAQECGECGDPIPEARRQHMTGCQYCTHCQSDLE 68 Query: 69 LQKP 72 K Sbjct: 69 KMKR 72 >UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD Length = 75 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D + +E +++R + G S EC ECG+ IP+ RRE + GV C+ C Sbjct: 7 DPLDRAAALSQAHLEVSLSRI--KKFEGVSAHECVECGSEIPKKRRELLQGVTDCVDCAA 64 Query: 66 EKDLQKPAY 74 K+ Y Sbjct: 65 IKETLSKNY 73 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE+ + ++ A+A+ R S CE+CG IP+ARR+A PG CI CQ+ ++ Sbjct: 5 DQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63 Query: 69 LQKP 72 Sbjct: 64 HPAR 67 >UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2J7_9PLAN Length = 148 Score = 57.5 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62 D ++INS + + +R I R + CE C PIP R +A+P +CI Sbjct: 49 DTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVMCIK 108 Query: 63 CQQEKDL 69 CQ+E + Sbjct: 109 CQREAEK 115 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 56.7 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D +E + A++ A S + C ECGAPIP+ RR A+PGV LC+ CQ K+ Sbjct: 6 DMGHEAEELARKAALSMAGTRRADAPSRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65 >UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas putida KT2440 RepID=Q88IG2_PSEPK Length = 72 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D N++ ++ ++ AR P ESL++C CG IP+ RR A+ G + CI CQ + Sbjct: 6 DLANDRAQWHLDLVLS-ARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQGFFE 64 Query: 69 LQKPAYTG 76 + Y G Sbjct: 65 KKGARYAG 72 >UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium RepID=A3DD29_CLOTH Length = 212 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + I A ++ +G S +CE CG I + R EA+P RLCI C+ K+ Sbjct: 70 EERLLEDINEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121 >UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales RepID=C1DXT7_SULAA Length = 144 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 Q + I A +I G CEECGA I + R EAIP VRLCI C Q +++ Sbjct: 56 QADRETLYLIDLALRKIDSGI-YGICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI---- 110 Query: 74 YTGYNRRGSKD 84 + +R ++ Sbjct: 111 VRQFQQRNEEE 121 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 8 DDAVNEQINSTIEDAIARARG--EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D + I++ A R I S C +CG IP +RRE+IPGV LC++CQ+ Sbjct: 7 DSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVSLCMYCQE 66 Query: 66 EKD 68 ++ Sbjct: 67 WRE 69 >UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae RepID=Q3ZL39_ESCBL Length = 76 Score = 54.8 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 1 MASGWAN-DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 M + D E+ + + R + ES C +C PIP AR +A+P Sbjct: 1 MTKAFDRASDLEMEERERLLNKHLRRVKELP---ESYGFCNDCEQPIPAARLQALPDAVT 57 Query: 60 CIHCQQEKDLQKPA 73 C+ CQ ++ ++ Sbjct: 58 CVTCQAIREHRRKH 71 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 54.0 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPR-GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 ND+ + I R ++ S + CE CGA IP AR+ A+PGV LC CQ Sbjct: 6 NDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQD 65 Query: 66 EKDLQKPA 73 K+ Q Sbjct: 66 VKEKQDVH 73 >UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67Q17_SYMTH Length = 269 Score = 54.0 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + D + + I++ I A + +G + CEECG PI R +A P CI CQQ Sbjct: 58 SKDLGLRSHMLRRIQE-IESALQRMDQG-TYGICEECGRPIDPERLKAFPSATTCITCQQ 115 Query: 66 EKDLQ 70 ++ + Sbjct: 116 RREAR 120 >UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGP7_HELMI Length = 238 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D A ++ + +++ IA+A+ I G CE C IP AR A+P LCI CQ Sbjct: 60 GKDLATRDRFSRELDE-IAKAKRRISEGI-YGICERCHQKIPDARMAAMPTATLCIECQS 117 Query: 66 EKDLQKP 72 ++ P Sbjct: 118 HEEELHP 124 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 27 RGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 R S C+ CG IP+ARR A+PGV LC+ CQ+ ++ Sbjct: 27 RNVHNGRISNTCCDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72 >UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FUG7_PSYA2 Length = 66 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D N+ ++ T+ ++RA + + SL EC ECG IP A+R+A+ GV LC+ CQ + Sbjct: 6 DRANDYVDLTMAHCLSRA-PKFDK-PSLTECMECGEDIP-AKRQAMGGVTLCVDCQSVFE 62 Query: 69 LQKP 72 + Sbjct: 63 KRGK 66 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D++V Q + + RA + S C CG IP+ RR+A+ GV+LCI CQ Sbjct: 5 DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQTLS 64 Query: 68 DLQK 71 + ++ Sbjct: 65 ERKQ 68 >UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UR73_RHOBA Length = 140 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAIPGVRLCIH 62 D V +++NS + + +R I + E CE+CG PIP R +AIP CI+ Sbjct: 49 DTVQDELNSQLVEVESRELLAIEEAIARFEEGRFGDCEDCGKPIPLNRLKAIPYAVDCIN 108 Query: 63 CQQEKDLQ 70 C++ + + Sbjct: 109 CRRAAERE 116 >UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM Length = 203 Score = 52.5 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 N+ + +E+A+ + +I CE CG PIP+ R +A+P C+ C+++ + Sbjct: 69 NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKKKSE 120 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 52.1 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D E A++ R S + CEECG IP+ RR A+PG + C CQ + Sbjct: 5 DTAAEIEELQRNAALSAHRINR-NAVSAERCEECGEDIPEPRRAAVPGCQTCSECQSVIE 63 Query: 69 LQKP 72 L+ Sbjct: 64 LKNK 67 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 52.1 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 1 MASGWAN-DDAVNEQINSTIEDAIARARGEIP---RGESLDEC--EECGAPIPQARREAI 54 M + + + D R + P +G S C + CG PIP+ RR+A+ Sbjct: 1 MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60 Query: 55 PGVRLCIHCQQEKDLQ 70 PGV+ C+ CQQ + + Sbjct: 61 PGVKFCVECQQRLEKK 76 >UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Propionibacterium acnes RepID=D1YA14_PROAC Length = 159 Score = 52.1 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 +S + D ++ N+ ++ ++ + CE CG PI +AR +A P +C+ Sbjct: 91 SSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFPRATMCV 150 Query: 62 HCQQEKDLQ 70 C+Q ++ + Sbjct: 151 KCKQRQERR 159 >UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C120_SPHTD Length = 130 Score = 51.7 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + I RA ++ +GE CE C PIP R EA+P R CI CQ + D ++ Sbjct: 72 ADRKVLIERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 51.7 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 25/59 (42%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 +I AR IP ECE+CG PIP+ARR A P C CQ + Sbjct: 9 EIEEMNRAQALAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQARHERHAK 67 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 51.7 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D + EQ + I AR G+S CE CG IP R++AIPGVR C CQ+ Sbjct: 20 DLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTECQRVL 79 Query: 68 DLQKPAY 74 ++++ Y Sbjct: 80 EIRQKQY 86 >UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V43_DESDG Length = 149 Score = 51.7 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + +E A+ R CEECG I +AR +A P LCIHCQ++++ + Sbjct: 85 RQLAAVESALHRI-----ATGGFGRCEECGDEIGEARLKANPTTTLCIHCQEDREAEA 137 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 51.7 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D E + A+ +A+ P+ S C++CG IP+ARR A G + CI CQ+ Sbjct: 6 DQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERI 65 Query: 68 DLQKPAYT 75 + K Y Sbjct: 66 EHAKAQYA 73 >UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12 Tax=Desulfovibrio RepID=A1VE28_DESVV Length = 78 Score = 51.3 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAIPGVRLCIH 62 D ++ E AI+ AR + G + C ECG IP+AR +A+PG LC Sbjct: 11 DQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGCGLCRE 70 Query: 63 CQQEKD 68 C +E + Sbjct: 71 CAEEME 76 >UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD Length = 222 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + D A++++++ I+ AI A G+ CE C IP R EA+P +C C + Sbjct: 57 SRDVAIHDRLHHRIQ-AIDSALQRYEEGK-YGLCEHCQKEIPLGRLEALPFTTVCTECSR 114 Query: 66 EKDLQKPA 73 +++++ Sbjct: 115 LEEMEEQH 122 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 Q IE+A+ R R CE+CG PIP+ R E +P R C+ CQQ + Sbjct: 62 QTLEDIEEALLRLRQ-----GRYGLCEKCGKPIPEGRLEILPYARCCVSCQQRR 110 >UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM Length = 73 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGE-----SLDECEECGAPIPQARREAIPGVRLCIHC 63 D +Q + + AIA + C +CG IP R +A+P V C+ C Sbjct: 5 DHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRCVSC 64 Query: 64 QQEKDL 69 Q +K+ Sbjct: 65 QDKKER 70 >UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6I0P9_9BACT Length = 136 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D ++ + ++ ++ +A + G S CE+CG I + R A+P +LCI CQ++K+ Sbjct: 61 DLALLEMRNRMKRSVDQALLRLEEG-SYGNCEDCGGEIEEKRLMAMPFAQLCIKCQRKKE 119 Query: 69 LQKPAYT 75 + Sbjct: 120 ELEKIER 126 >UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4 Length = 242 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 D A+NE +++ I A I G S +CE CG IP R EAIP R CI +E Sbjct: 63 KDIALNEHSEQLLDE-IDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQHAEE 120 Query: 67 KDLQKP 72 K + Sbjct: 121 KSVSNK 126 >UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2 Tax=Cystobacterineae RepID=Q1D0G7_MYXXD Length = 130 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + + A+ + R + ++ ECEECG IP R A+P C+ CQ KD Sbjct: 65 VLARVLKALGKLRDDP---DAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + + AI AR + G +EC ECG PIP ARR +P C CQ + Sbjct: 8 ELAQQIEQMQRDVAIELARAQC-HGAGAEECVECGEPIPAARRACVPYATRCTECQGRFE 66 Query: 69 LQKPAY 74 ++ Y Sbjct: 67 QRRTGY 72 >UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEV8_RALME Length = 123 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 DA+ E +ED IA ARG + G S C EC PIP R +A P + C CQ+E + Sbjct: 59 DAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTACQREHE 116 Query: 69 LQK 71 ++ Sbjct: 117 QKR 119 >UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7U4_AMMDK Length = 176 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 A D A+ E ++ I A + G + CE CGAPIP+ R EA+P LC C++ Sbjct: 37 AKDLALREDALLKLQ-VIEDALRRLEEG-TYGYCESCGAPIPRERLEAVPYTTLCHACKE 94 Query: 66 EKDLQ 70 ++ + Sbjct: 95 RQEAK 99 >UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=45 Tax=root RepID=A7ZJE9_ECO24 Length = 73 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D+ +E AI + R + S C ECG PI + RR + G R C CQ++ + Sbjct: 6 DSASEIEELQRNTAI-KMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQEDLE 64 Query: 69 LQKP 72 L Sbjct: 65 LISK 68 >UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE Length = 143 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRG-------ESLDECEECGAPIPQARREA 53 +A E+ + + ++ + R + C EC IP R +A Sbjct: 53 VADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGVCSECDNEIPGKRLKA 112 Query: 54 IPGVRLCIHCQQEKDLQK 71 +P C+ CQ D ++ Sbjct: 113 VPWTPYCLDCQDSADRRR 130 >UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus RepID=A5UPY9_ROSS1 Length = 121 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + + + A + G + C +CG PIP R EA+P LC+ CQ ++ + Sbjct: 66 RELLEQVNAALRRLDEG-TYGICADCGEPIPIERLEALPYATLCVRCQSTRERARR 120 >UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MQQ3_WOLSU Length = 113 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDE--CEECGAPIPQARREAIPGVRLCIHCQQ 65 D + +++ +E + + + R +S D C+ C PIP R A+P +C+ C Sbjct: 51 DQNIQKRLLLDLEARLKKLEYALTRIDSPDFGICQICDEPIPYKRLFALPEATICVDCAN 110 Query: 66 EK 67 E+ Sbjct: 111 ER 112 >UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS Length = 120 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + IE A+ R +C +CG IP+ R AIP +CI CQ ++ ++ Sbjct: 63 DLRCLQQIESALLRI-----EQGRYGKCADCGESIPEDRLRAIPYSLMCIECQSARESKR 117 Query: 72 PAY 74 A+ Sbjct: 118 RAF 120 >UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia RepID=A4XKS6_CALS8 Length = 209 Score = 49.8 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + I +A +I +G + C C IP R AIP CI CQ++ + ++ Sbjct: 75 ELIEKALSKIEKG-NFGYCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRE 124 >UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUR8_METI4 Length = 249 Score = 49.8 bits (117), Expect = 2e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 I+D++ R + C+ CG PIP R +AIP R + CQ++ + +K Sbjct: 164 EIDDSLKRIEDN-----TYGICQMCGKPIPIIRLQAIPYARFTVDCQRQLEKEK 212 >UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H2_PELTS Length = 242 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 5 WANDDAVNEQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + + N+ + AI RA +I G + +C+ CG IP R EA+P C C Sbjct: 63 FERSKDFALRENAMLAVAAIDRALAKIENG-TYGKCDNCGREIPLERLEAVPSTVCCKKC 121 Query: 64 QQEKDLQKPAYTG 76 ++ ++ Sbjct: 122 KEAEEKNTRPEAR 134 >UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella RepID=Q0HYS5_SHESR Length = 68 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%) Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 +A+ P S +C ECG IP+ RR+AI GVRLC+ CQ ++ Q Sbjct: 23 KAQAAKPVPPSATDCAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68 >UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZKC1_PLALI Length = 152 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 24/110 (21%) Query: 1 MASGWANDDAVN---------EQINSTIEDA---------IARARGEIPRGESLDECEEC 42 M ++ DD +N EQ + A I RA I G C++C Sbjct: 29 MGLAYSPDDGINDLGETAALVEQSELHTQLAALETRELMQINRALALIEEGH-YGVCQKC 87 Query: 43 GAPIPQARREAIPGVRLCIHCQQEKD----LQKPAYTGYNRRGSKDSQLR 88 IP AR +A+P +C+ CQ+ ++ + AY+ + R + D + R Sbjct: 88 SKAIPLARLQAVPFTTVCVECQRRQEDLGDNDEDAYS-VDWRKAYDHERR 136 >UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria RepID=Q2LSS1_SYNAS Length = 150 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + + A I GE CE CG PI + R A P LCI C+ +++ + Sbjct: 91 ERKLIAKMQEAIKRIDEGE-FGLCEVCGGPISEKRLMARPVTTLCIDCKTKQEKLEK 146 >UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae RepID=Y250_AQUAE Length = 145 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D+ N +I + E I A +I +G + CE CG IP+ R AIP R C C +E Sbjct: 58 DNLSNVEIATLRE--IDYALEKIEKG-TYGICERCGEEIPEPRLCAIPWTRYCAKCAEEV 114 Query: 68 DLQKPAY 74 + + Y Sbjct: 115 ERESGTY 121 >UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog n=1 Tax=Clostridium acetobutylicum RepID=Q97H97_CLOAB Length = 200 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 + + I A ++ G CE CG PI + R E +P C+ CQ + Sbjct: 70 EEALLNKIGNAIDKVEHG-GYGICEVCGKPISEERLEFVPYAENCVECQNK 119 >UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B65 Length = 95 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL---Q 70 ++ + I RA + G + +CE C IP AR A+P C+ CQ+E + Sbjct: 3 ELEAKELAQIERALRRLKAG-TYGKCEVCSIKIPVARLNALPFSTFCVDCQREMERDGGW 61 Query: 71 KPAYTGYNRRGSKD 84 Y D Sbjct: 62 SADYGANGWDRITD 75 >UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2 Tax=Betaproteobacteria RepID=A1K6D2_AZOSB Length = 135 Score = 49.4 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 I AR I GE C +CG IP AR EA P C+ CQ + Sbjct: 76 IEAARERIAEGE-AGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 49.4 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 + + + EQ + A R ES + E CG PIP+ RR A+ G R C+ Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61 Query: 63 CQQEKD 68 CQ+ ++ Sbjct: 62 CQERRE 67 >UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS Length = 157 Score = 49.4 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +E+A+ R + + C+ CG IP+AR A+P C++C++E ++ Sbjct: 83 LEEALKRIKN-----GTFGVCKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130 >UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9 Length = 127 Score = 49.4 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 5 WANDDAVNEQINSTIED----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + N D N + S++E I +A I + + C C I + R AIP LC Sbjct: 54 FDNMDGNNLEALSSVEKKKLHLINQALYRISQ-NTYGNCLACDKSITRERLVAIPYAFLC 112 Query: 61 IHCQQEKDLQKP 72 I CQ +K+ + Sbjct: 113 ISCQTKKEKKGK 124 >UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGY5_SYNFM Length = 257 Score = 49.0 bits (115), Expect = 4e-05, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I A G+I GE CE CG I R EAIP RLC+ C +D ++ T Sbjct: 65 EQIDLALGKIAIGE-YGICESCGDDIALKRLEAIPWARLCVDC--ARDFEQRHET 116 >UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4 RepID=B9JYG7_AGRVS Length = 72 Score = 48.6 bits (114), Expect = 5e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + E+I + +A AR ++ + EC +CG IPQARR A P C CQ + Sbjct: 8 ELAEERIEQERDAKVAAARADLKKA-GATECLDCGRAIPQARRFAYPSAIRCFDCQVSIE 66 Query: 69 LQ 70 + Sbjct: 67 RE 68 >UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4E4_METEA Length = 73 Score = 48.6 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D + ++ +A R + + ++C++CG IP RR A P R C+ CQ Sbjct: 6 DMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVRCQTLA 65 Query: 68 DL 69 + Sbjct: 66 ER 67 >UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK24_9BACT Length = 147 Score = 48.6 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 + + + +N + I+ + + E C +C IP+AR +AIP +LC+ Sbjct: 63 SDNFMREINLNVMSDEGIKVQLVQQAIERLDEGKYGRCVDCRDDIPEARLDAIPYAKLCV 122 Query: 62 HCQQEKDLQ 70 C++ ++ Q Sbjct: 123 ACKETRESQ 131 >UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ID32_BORPD Length = 94 Score = 48.6 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 15 INSTIEDAIARARGEIP---RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 A+ R + RG + C +CG I AR +PG C+ CQ + Q+ Sbjct: 29 AEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDCQTAHEKQQ 88 Query: 72 PAYTGY 77 + Y Sbjct: 89 TRHARY 94 >UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT Length = 116 Score = 48.6 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +Q IE+A+ R S CE C PI + R + P + CI C++ + ++ Sbjct: 61 QKQELKEIEEALKRI-----EEGSYGICEMCDEPIQEERLKIKPYAKYCIICREIIEKEE 115 Query: 72 P 72 Sbjct: 116 K 116 >UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE Length = 149 Score = 48.6 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Query: 5 WANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 + N + ++ ++ I DA+ R + G C EC PI R +A+P R C+ CQ Sbjct: 74 FLNRNTIDMKLLREIADALHR----MDTGH-YGVCPECEEPISAKRLDAVPWARYCVTCQ 128 Query: 65 QE 66 ++ Sbjct: 129 EK 130 >UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UEL7_RHOBA Length = 121 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + IE+A+ R R + +CE+CG IP R + +P R C+ CQ+ + Sbjct: 65 RELADIEEALERLRD-----GTFGDCEDCGKSIPMNRLQVVPHARRCVRCQKASE 114 >UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA Length = 251 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D V Q+ IEDA+ + C CG IP+ R EAIP LC+ C+++ + Sbjct: 68 DNVQVQL-RKIEDALQSI-----AEGTYGYCRRCGREIPRERLEAIPETTLCLECRRKME 121 Query: 69 LQKPAYTG 76 + ++ Sbjct: 122 GKADKHSR 129 >UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q506_9BACT Length = 140 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 E +I+DA+ R + CE C I + R +A+P LC++CQ+E++L Sbjct: 86 EDSVRSIDDALERI-----EEGTFGICEACEKKINRERLKAVPYASLCVNCQREEEL 137 >UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema denticola RepID=Q73KX9_TREDE Length = 119 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 N + I+ A+ R R +C C IP+ R +A+P CIHCQ + + Sbjct: 60 GENNVKKLQKIDSALERIR-----EGKYGKCITCKEQIPEDRLKALPYALKCIHCQAKSE 114 Query: 69 LQ 70 + Sbjct: 115 KK 116 >UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GTL3_9DELT Length = 243 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 +A++ Q S + + I A + G + C+ CG I +AR +A+P R C C + + Sbjct: 56 NALDSQARSEL-NHIDHALDRMIIG-NYGICDSCGQEISEARLQAVPWARYCRVCVNKAE 113 Query: 69 LQ 70 + Sbjct: 114 EK 115 >UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWL7_HALOH Length = 228 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 D+A + + + +E+A+ R + CE+CG I + R E IP LC CQ + Sbjct: 66 RDNA--QVLLNKVENALNRL-----EEGNYGLCEKCGQEIREERLETIPYATLCERCQAK 118 Query: 67 KDLQKPAYTGYNRR 80 ++ + YNR Sbjct: 119 EEGKD-----YNRD 127 >UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N407_9BACT Length = 133 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + IEDAI R +C+ECG PI + R P C+ C++ + Q Sbjct: 77 VLRLIEDAIKRLVD-----GEYGKCQECGEPISEGRLAIRPYAVYCVKCKEMHEKQGWH 130 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + RA + G + CE CG PI +AR +A P LC+ C+Q+++ + Sbjct: 186 REVLSQTERALDRLDAG-TYGLCENCGNPIGKARMQAFPRATLCVECKQKQERR 238 >UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG44_9RHIZ Length = 76 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M G + + + + IA AR + + +L +C CG I RR A+P R C Sbjct: 1 MKIGNFAHELADMRAEQERDAGIAAARAPLKQTGTL-DCIRCGDEIEAERRAALPSARRC 59 Query: 61 IHCQQEKDLQK 71 + CQ+ + + Sbjct: 60 VDCQESFERWQ 70 >UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 Tax=Deltaproteobacteria RepID=A1AL35_PELPD Length = 118 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + + I A I GE CEECG I +AR + P LCI+C+ E + ++ Sbjct: 61 ERKLINKIKEALSRIDSGE-FGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEK 116 >UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas RepID=A5W685_PSEP1 Length = 154 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 ++++ +E A+ R ES C++ G PI R P + CI Q+ + Sbjct: 94 DQRLLPQLEMALDRIAD-----ESFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQLD 148 Query: 72 PAYTGY 77 Sbjct: 149 RHQRQV 154 >UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root RepID=YO82_BPP2 Length = 74 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 N D + EQ +E I AR + G S CEEC APIP ARR A P C+ CQ Sbjct: 3 DNVDFIQEQQAELLERQINAARVK-HCGASALVCEECDAPIPAARRAAYPSATRCVSCQS 61 Query: 66 EKDLQKPAYTG 76 + + Y Sbjct: 62 VFEAKNKHYRR 72 >UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788757 Length = 187 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D A+ E + +E I A + +GE C ECG IP R EA+P C+ Sbjct: 64 GRDLAIQETLERELE-QIDAALQRMDQGE-YGTCAECGREIPYERLEALPYTAYCLEHTP 121 Query: 66 EKDL 69 KD+ Sbjct: 122 RKDI 125 >UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae RepID=C9S0U4_GEOSY Length = 269 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 D A+ E + + I RA G I G + C CG PIP R EA+P C Sbjct: 64 KDLALKEHAERELRE-IERALGAIADG-TYGTCRVCGRPIPYERLEALPTTLYC 115 >UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBT1_ERYLH Length = 104 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGE--SLDECEECGAPIPQARREAIPGVRLCIHC 63 DD E ++ + I + R + R E S C +CG PIP+ R EA P CI C Sbjct: 46 DDEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKC 103 >UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 Tax=Planctomycetaceae RepID=D2R7B0_9PLAN Length = 123 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 9/59 (15%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 D + EQI + +E A A C ECG IP+AR E +P C+ C ++ Sbjct: 70 DGSTLEQIEAALERIEAGA---------YGVCTECGCKIPKARLEVLPYTAHCVKCAEK 119 >UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 Tax=Cystobacterineae RepID=A7H9X1_ANADF Length = 120 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 + + I+ A+AR + CE C I R EA P LCI C++E++ ++ ++ Sbjct: 65 LLAKIDKALARI-----ENGTFGICERCEEEISVKRLEARPVTTLCIRCKEEQEQKEKSF 119 Query: 75 T 75 Sbjct: 120 G 120 >UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales RepID=A1SL71_NOCSJ Length = 283 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 2 ASGWANDDAVN-EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A+ + D + I RA I G + CE CG PI + R A P LC Sbjct: 215 ATSFERDHELTVLNSERDKLAQIERALARIDDG-TYGVCESCGNPIGKMRLMAFPRATLC 273 Query: 61 IHCQQEKDLQ 70 + C+Q ++ + Sbjct: 274 MTCKQREERR 283 >UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales RepID=D0LZD2_HALO1 Length = 124 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 ++ + + A ++ G + CE C PI + R EA P LCI C++ ++ + + Sbjct: 66 EKSLLNKLDLALRKLGEG-TFGICEVCEEPIGKKRLEARPETTLCIQCKEAQERDERVFG 124 >UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5P4_PELCD Length = 127 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 DA E+I I++A+ R R S CE CG I AR E +P R C+ C+QE + Sbjct: 60 DAGREEIL-EIDEALERLRD-----GSYGRCEACGKTIDIARLEILPFTRRCLTCRQEAE 113 Query: 69 LQKPAYTG 76 + G Sbjct: 114 KEAKTKAG 121 >UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V318_9AQUI Length = 133 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 I++A+ R + CE CG PI + R EAIP LC +E + Sbjct: 51 KKIDEALERI-----SEGTYGYCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98 >UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage gene n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EIS7_ALISL Length = 71 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 Q + + +A+ + ++ S +EC EC IP+AR+EA+ G + C++CQ+ D Sbjct: 14 QTEVALANHMAKQKNKVEIK-SAEECIECEKAIPKARQEAVKGCQYCVNCQELADK 68 >UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L3E3_9DELT Length = 131 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + Q+ I +A+AR + C+ECG I AR A P LC+HC+ + Sbjct: 61 DRQLIGEINEALARVKD-----GDYGICQECGEEIGLARLRAQPTATLCVHCKSMLEEMG 115 Query: 72 PAY 74 Y Sbjct: 116 RPY 118 >UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria RepID=DKSA_BUCBP Length = 151 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + + I + ++ + CE CG I R EA P LCI C+ ++++ Sbjct: 92 ERKLIEKIEKTLKKVENKD-FGYCESCGIEIGIKRLEARPTANLCIDCKTLSEIREKQIL 150 Query: 76 G 76 G Sbjct: 151 G 151 >UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGE3_THEYD Length = 129 Score = 46.7 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + I I A ++ G + CE CG IP+ R + +P C CQ++ ++ + Sbjct: 64 QLSTHRDILKKIEEALRKLEEG-TYGICEMCGDEIPEERLKILPFAIYCRDCQEKIEMIE 122 Query: 72 P 72 Sbjct: 123 K 123 >UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C95_SOLUE Length = 128 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 + ++ + +E+A+ R C C I + R +A+P R C+ CQ E Sbjct: 59 RMNGLDYRQLRMVEEALDRL-----ESGDFGICLACDESIAEKRLQALPWARYCVKCQDE 113 >UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MH72_ALKOO Length = 226 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ- 65 ++ N + N +E I A +I G + C+ CG I + R E +P CI C + Sbjct: 64 QNNLENHEKNRLLE--IDDAVQKINEG-TYGNCQICGNKILEERLEIMPASITCIDCAEK 120 Query: 66 -------------EKDLQKPAYTGYNRRGSK 83 E+++ PA+ N+ G Sbjct: 121 EIESYKLSTDRSVEEEILSPAFERNNKDGED 151 >UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10 Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX Length = 206 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 I IEDA R + C C PI + R EA+P LC C + DL+ Sbjct: 75 ILRQIEDAFKRM-----EIGTYGICAHCHKPIEEERLEALPYTVLCAECAKNNDLELKDL 129 Query: 75 TGYNRRGSKDSQLR 88 N R +++ ++ Sbjct: 130 K--NSRPNEERMIK 141 >UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium RepID=A0Q071_CLONN Length = 206 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 E+ I+ + ++ G + C C IP R EA+P + C+HC+ +D Sbjct: 67 EKAELEKLHEISESLYDMEHG-TYGICRICKNQIPDDRLEAVPYAKYCVHCKNNQDK 122 >UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VTU7_9FLAO Length = 127 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 T+ + RA +I G + C+ C IP+AR E +PG C+ C + K + Sbjct: 75 TVSKYLLRAMDKIEEG-TYGLCDVCKKEIPRARLEIVPGALSCVVCDKLKKI 125 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + + RA + G + CE CG PI +AR +A P LC+ C+Q+ + + Sbjct: 179 SRERLEQTERALLRMDAG-TYGVCENCGKPIGKARMQAFPHAILCVDCKQKSERR 232 >UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5L2_SPHTD Length = 132 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 +I++ + + + A + RG + C +CG I AR +A+P C+ CQ + + Sbjct: 75 RIDAELAE-VDAALDRLERG-TYGVCIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129 >UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE71_ELUMP Length = 258 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D I A +I +G +CE C +P+ R +A+P R C+ CQ K+ Sbjct: 210 DQIESALRKIDKGI-YGKCENCRQLLPKKRIKALPFARYCVVCQSSKE 256 >UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12E87_POLSJ Length = 134 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 9 DAVNEQINSTIEDAIARAR----GEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 DA + +E +A R + C +CG I R A+P C CQ Sbjct: 62 DAKVDHAAHELEQVLAALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQ 121 Query: 65 QEKDLQKPA 73 + ++ Sbjct: 122 AIHEHERQP 130 >UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria RepID=A5EW31_DICNV Length = 143 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I +A I +G CE+C I R EA P LCI C+ + ++ ++ Sbjct: 80 ERKLLRKIDKALERIKQGH-FGYCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF- 137 Query: 76 GYNRR 80 YN R Sbjct: 138 -YNER 141 >UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 Tax=Shewanella RepID=B1KFH6_SHEWM Length = 131 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 6 ANDDAVNEQ-----INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + DA+ +Q ++ I R + + C ECG PI R P +C Sbjct: 62 SRIDAIQQQEMAQASEVLMQQHIVRIKQIFLDTDEYGFCLECGEPIGLGRLTIHPTAEMC 121 Query: 61 IHCQQEKD 68 I CQ E + Sbjct: 122 IGCQSEAE 129 >UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SLK5_METPP Length = 122 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 D ++ A + G S CE CG PI R A+P R C+ CQ++ D Sbjct: 70 DEVSAALQRLNTG-SYGHCERCGEPIGLPRLRALPEARHCLDCQEQADR 117 >UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG Length = 119 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + DAI A +I + + +CE C I R + IP + CI CQ+E + Sbjct: 62 DKMTLDAINDALVKIEK-NAYGKCEGCSNNILLERLKVIPWAKYCIQCQEESE 113 >UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3S7_ACIC5 Length = 139 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 11 VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 ++ N + ++ R E S EC ECG I R EA+P CI CQ++ ++ Sbjct: 71 FSQGTNKHTQLSLVRLALERLEDGSYGECAECGEDISPRRLEAVPWTPYCISCQEK--VE 128 Query: 71 KPAYTGYNR 79 + G +R Sbjct: 129 NGGFEGGSR 137 >UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium Ellin514 RepID=B9XR79_9BACT Length = 192 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%) Query: 3 SGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGV 57 + D A+ ++ IE+A+ R + CE G PIP+AR EAIP Sbjct: 88 DNFDRDFALSLLSSDQDAIYEIEEALKRIEKN-----TYGVCELTGKPIPKARLEAIPWT 142 Query: 58 RLCIHCQQEKDLQ 70 R + Q + + + Sbjct: 143 RFTVQAQAQLEKE 155 >UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZJ9_DESAD Length = 115 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 +EDA+ R + + ECEECG IP AR +P R C++C + + Sbjct: 69 LEDALNR----LEKDSFFGECEECGEDIPLARLLTLPESRYCVYCAEHLE 114 >UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7 Length = 69 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA + E + + + R P G SL C+ECG IP+ARR A+ G+ C Sbjct: 1 MADCFDRAQ-ARELQDRELALQAHQVRVR-PSGPSLTHCQECGEQIPEARR-ALGGIIRC 57 Query: 61 IHCQQEKDL 69 CQ + Sbjct: 58 TPCQARFEK 66 >UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL Length = 121 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 9 DAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 + N++ + +E A+ R + EC CG+ I R EA+P R CI CQ++ Sbjct: 58 QSANDRNLLQMVEGALIRI-----GEGTYGECVSCGSEINSKRLEAVPWARYCIGCQEKI 112 Query: 68 DL 69 + Sbjct: 113 EK 114 >UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WA51_MAGSA Length = 74 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 20/43 (46%) Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 P GES C CG IP RR A+PG C C Q+ P Sbjct: 29 PTGESAYFCRSCGERIPDERRAAVPGTNHCTFCAQQITAASPH 71 >UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae RepID=A4X6U9_SALTO Length = 132 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 A + G + CE CGA IP R E P C+ C+Q ++ + Sbjct: 79 DRRAQFEHALTRLEEG-TYGFCEGCGASIPVERLEIFPSATTCVTCKQTRERRA 131 >UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q48AS1_COLP3 Length = 104 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 2 ASGWANDDAVNE-QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A+ ND ++E + +E ++ ++ + C EC PI R A+P C Sbjct: 40 ATETENDGVLDEIHHEAKLELSLVKSALKRITEGLYGSCVECEEPINPDRLSALPYTTKC 99 Query: 61 IHC 63 I C Sbjct: 100 IKC 102 >UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root RepID=A5EYQ4_VIBC3 Length = 69 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 8 DDAVNEQINSTIEDAIARARG-EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 D A E + A RAR + S C EC PIP+ R+E + G + C CQ Sbjct: 6 DAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTPCQAA 65 Query: 67 KDLQ 70 K+ + Sbjct: 66 KEQR 69 >UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT Length = 202 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 36 LDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 CE CG I R EA P CI C+ ++++ Sbjct: 162 YGYCESCGVEIGIKRLEARPTATKCIDCKTVDEIKEK 198 >UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMB8_SYNFM Length = 122 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 NE++ I + + R R CEECG I R +A P CI C++ + + Sbjct: 63 NERLVQEILNGLQRIR-----TGDFGVCEECGKDIELNRLKAHPSATQCIKCKKAAERKA 117 Query: 72 P 72 Sbjct: 118 R 118 >UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCE7_CATAD Length = 275 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 ++ E A+AR ++ CE CG P+ + R +A P LC+ C+Q+++ + Sbjct: 224 EMLQQTERALARL-----AADTYGVCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275 >UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIH5_9PROT Length = 118 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 ++ IE A+ R + CE CG I R + P RLCI C+++ + Q Sbjct: 62 QQKAFLEIESALKRI-----ENGTYGLCESCGEQISLERLKVNPEARLCISCKEQAEKQN 116 Query: 72 PA 73 + Sbjct: 117 RS 118 >UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXU2_COMTE Length = 76 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 1 MASGWANDDAVNEQI-NSTIEDAIARA-RGEIPRGESLDECEECGAPIPQARREAIPGVR 58 M + A Q+ + D RA +S EC CGA IP+ARR+A+PG + Sbjct: 1 MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATEC-ACGALIPEARRKAVPGCQ 59 Query: 59 LCIHCQQEKDLQK 71 C+ C+ ++ +K Sbjct: 60 RCVKCESAQERKK 72 >UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10 Tax=Actinomycetales RepID=A6WCW5_KINRD Length = 159 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + + RA + G CE C P+ +AR +A P V LC+ C+ + + Sbjct: 107 RELLEQTQRALVRLGSGV-YGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159 >UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X580_DESRD Length = 115 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + +A ++ GE CEECG I R A P RLCI CQ++ + Sbjct: 68 VEQALHQLANGE-YGLCEECGEEIGVPRLVACPSARLCIECQEQLERAA 115 >UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM Length = 234 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D A+ E +T+ AI A ++ G CE C I Q R EAIP CI C+ Sbjct: 62 GKDFALREDAITTL-GAIDDALDKMEEGM-YGICEVCHQEISQDRLEAIPYTTQCIDCKS 119 Query: 66 EKDLQKPAYTGYNRRGSKDSQLR 88 + ++ R +++ L+ Sbjct: 120 RDEHLPKSHE----RSAEEDVLK 138 >UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO Length = 103 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 24 ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 A+A + G + CE CG IP AR E +P R C+ CQQ + Sbjct: 61 AQALKRMSEG-TYGVCERCGQDIPTARLEILPSARFCVPCQQRR 103 >UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1 RepID=B0ZSI9_9CAUD Length = 75 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M+ ++ AR + + C ECG I RR+A+P C Sbjct: 1 MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60 Query: 61 IHCQQEKDLQKPAYT 75 CQ+ D Y Sbjct: 61 FGCQEFVDRTAKGYR 75 >UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGP9_BDEBA Length = 126 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 22 AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 AI RA G+I G + +CE C I R + P LCI C +E++ Q Sbjct: 74 AIERALGKIADG-TYGQCESCSEIINARRLQVRPFTALCIDCMEEQESQ 121 >UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK Length = 72 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 7 NDDAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 +D E E IA + + G C++CG I + R AI GV+ CI CQ+ Sbjct: 3 PEDWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEI-EKERRAIKGVKRCIFCQE 61 Query: 66 EKDL 69 + Sbjct: 62 RYER 65 >UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C001_9PLAN Length = 141 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Query: 13 EQINSTIEDAIARARGEIPRGESL------DECEECGAPIPQARREAIPGVRLCIHCQQE 66 + + S + + + +I R SL CE C IP AR +A+P C+ C ++ Sbjct: 43 QDLESHLAEIEYKELMQIRRAISLIQEGRYGHCESCNKNIPIARLKAVPYAMFCVSCAEQ 102 Query: 67 KD 68 ++ Sbjct: 103 RE 104 >UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus RepID=Q473A0_RALEJ Length = 124 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 6 ANDDAVNEQINSTIED-----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A ++ V Q ++ +E A RA E + C +CG IP +R +A P R C Sbjct: 49 AEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGTCTDCGEAIPYSRLQAYPTARRC 108 Query: 61 IHCQQEKDL 69 CQ+ + Sbjct: 109 ADCQRGHER 117 >UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT Length = 123 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 ++ E+ N + I A + G + C EC I + R +P RLC+ CQ++ +L Sbjct: 55 SLQEKRNRERQ-MIDEALVSLEEG-TYGICVECNTEISEKRLAVMPFARLCVECQEKIEL 112 Query: 70 QKPAYTGYNR 79 + G R Sbjct: 113 LEKIERGEQR 122 >UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT Length = 123 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + I +A I GE EC+ CG PI R EA P LCI C+ ++ ++ Sbjct: 64 ERRLIKKIDQAIERIQNGE-FGECDACGGPISVKRLEARPVTTLCIECKTAQEQEER 119 >UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XZG1_PSEMY Length = 72 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG--VRLCIHCQQE 66 D N+++ ++ +A + +ECE+CG PIP R +A+ C+ CQ Sbjct: 6 DIANDRMLDELDRRLANH-ALARQCPVAEECEDCGDPIPFERVQALAKLPCLRCVECQGY 64 Query: 67 KDLQ 70 + + Sbjct: 65 HERK 68 >UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL Length = 245 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 +E + +EDA+ R S C CG PI R AIP C Sbjct: 73 HELHLARVEDALERIED-----GSYGYCATCGKPISYERLRAIPETAYCKD 118 >UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio vulgaris RepID=Q72G22_DESVH Length = 176 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 E +E+A+ R CE CG IP AR +A P RLC+ CQQE + Sbjct: 110 EHRIGLLENALRRL-----EAYDYGVCEGCGEDIPVARLKASPATRLCVFCQQESE 160 >UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales RepID=A7K6F3_VIBSE Length = 208 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I + +I + + CE CG I R EA P LCI C+ ++++ Sbjct: 85 NRDRERRLIKKIEKTLDKI-KEDDFGFCESCGVEIGVRRLEARPTADLCIDCKTLAEIKE 143 Query: 72 P 72 Sbjct: 144 K 144 >UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE Length = 136 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 A ++ +V+ + ++DA+ R S +C CG PI AR EAIP C Sbjct: 64 ADEGLHNSSVDSETLQQVDDALRRI-----EQGSYGKCVICGKPIEPARLEAIPWTPYCK 118 Query: 62 HCQQEKD 68 Q+ + Sbjct: 119 ADQERLE 125 >UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO Length = 76 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D NE + AI + + + ++ C +C IP+ R++ G CI CQ+ + Sbjct: 6 DRANEYTEIMQQLAIQKHQQKTREKSTVKYCLDCQEEIPEIRQKN--GYCRCIDCQRIIE 63 Query: 69 LQKPAYT 75 + Y Sbjct: 64 KHQRIYR 70 >UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J2D3_DESDA Length = 130 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 22/48 (45%) Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGS 82 +C +CG IP R A PG C CQQ+++ +RG+ Sbjct: 74 GPRQCVDCGEDIPLKRLVAAPGTVRCFSCQQQEERAAAPLAATVQRGT 121 >UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AYE RepID=B0V602_ACIBY Length = 72 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 AS D E ++ + + SL ECEECG IP R+ V LC+ Sbjct: 5 ASMTDKIDIAQELQLKQVQ-----IQPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCV 58 Query: 62 HCQQEKDLQKPAY 74 C+ ++ Y Sbjct: 59 ECKNTQEKLSKRY 71 >UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter RepID=C6E710_GEOSM Length = 130 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 22 AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 A+ A+ + +G + +CE CG I R +P C+ CQ+EK+ Sbjct: 75 ALEEAQRRVEQG-TYGKCENCGEVIDIQRLRLMPFAAYCVSCQKEKE 120 >UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia profundicola AmH RepID=B9L783_NAUPA Length = 117 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + I A +I G + CE C PI +AR + P + CI C++ + + Sbjct: 67 EEINDALKKIDEG-TFGICEMCEDPIQEARLKIKPYAKYCIICREIIEKEGK 117 >UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U5V5_9DELT Length = 111 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + A + E C +C PIP AR +A+P + C+ C + Sbjct: 56 EAQLSKTRVRLARLGEALRRVDDDEDFGLCIDCSKPIPMARLKAMPETQYCVDCAE 111 >UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales RepID=A4XDN2_SALTO Length = 139 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + RA + G CE CG PIP R A P LC+ C+Q + + Sbjct: 88 ERITQVERALERLDEG-GYGWCERCGNPIPVERLAAFPSATLCVTCKQLAERR 139 >UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM Length = 137 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Query: 2 ASGWANDD---AVNEQ--INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 A+ + DD + ++ + S I++A+ R + CEE G I R + P Sbjct: 54 ANSYEADDIIMSAQKRNSLLSEIDEALERMEQGV-----YGYCEETGDEIGFGRLDLEPT 108 Query: 57 VRLCIHCQQEKDLQKP 72 R C+ Q+ D + Sbjct: 109 ARYCVDVQERLDKKNR 124 >UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP2_OCEIH Length = 224 Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 D A+ E +ED I A I G + C CG IP R EAIP C+ Sbjct: 63 KDIALQEHTEKELED-INAALHAIEEG-TYGICTVCGEDIPHERLEAIPTTDRCVK 116 >UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG86_9BACT Length = 148 Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 6 ANDDAVNEQINSTIEDAIARARG-----EIPRGESLDECEECGAPIPQARREAIPGVRLC 60 +D + EQ +E + R + + CE CG I + R E IP C Sbjct: 73 GSDTNLMEQSVMMLESEREKIRQLNEALQRISDGTYGICEFCGEFIQENRLEIIPYATCC 132 Query: 61 IHCQQEKDLQKP 72 + C+++ + +K Sbjct: 133 VACKEKNEDKKR 144 >UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJK4_DESAH Length = 114 Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 S +E A+AR C C PIP AR +P LC+ C Sbjct: 67 SKLERALARI-----GSPDFGLCSACEEPIPFARLMILPETELCVKC 108 >UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD Length = 118 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 8 DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D +I I + R + R + ECE C PI R A P LCI C+ Sbjct: 50 DRNFELRIRDRERKLIMKIRQALERIEQGTFGECECCEEPIGAERLRARPVTTLCIDCKT 109 Query: 66 EKDLQKP 72 E++ ++ Sbjct: 110 EQERKEK 116 >UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM Length = 119 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 18 TIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 E + R + R E C++CG IP AR A+P C+HC ++ Sbjct: 56 RTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCVHCMSARE 108 >UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter RepID=A1VXK8_CAMJJ Length = 120 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 IED++ + + + CE C I R + P R CI C+Q + K Sbjct: 68 EIEDSLDKIKN-----GTYGICESCDDEIDSQRLKVKPHARYCITCRQIAEQGKKHEN 120 >UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK suppressor protein n=2 Tax=Brachyspira RepID=C0QW50_BRAHW Length = 121 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 Q D + A I G + +C +C I + R A+P C++C + + +K Sbjct: 60 QKEKDKLDMLNNALKRIEEG-TYGKCIDCKEEINEERLTALPYTLRCVNCMSKYEDKKRR 118 Query: 74 YT 75 Sbjct: 119 EK 120 >UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3M6_ACIBC Length = 66 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 9 DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D E + ++ IA R R E GES EC ECG IP+ RR A+ GV+ CI CQ + Sbjct: 6 DKAQESADYLLQQEIANRCRFE---GESEKECVECGEEIPE-RRRALGGVKFCIECQTKL 61 Query: 68 DLQKP 72 + ++ Sbjct: 62 ERKRR 66 >UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae RepID=Q221D7_RHOFD Length = 124 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 +A D +E+++ ++ A+ R S C +CG IP AR A P CI C Sbjct: 59 EFALDARDSEELD-RLDAALRRIED-----GSYGLCVDCGVGIPAARLHAAPDALRCIAC 112 Query: 64 QQEKDLQK 71 Q++ + + Sbjct: 113 QEKLEKAQ 120 >UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0C3_STRRD Length = 110 Score = 44.4 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 A + + +++ A+ R + C+ CG IP R +A P R C+ CQ+ Sbjct: 46 AKSGLLADIVSAERNLAVVRQALRDVTELTYGRCDGCGLAIPFERLKARPLARFCMLCQR 105 Query: 66 EKD 68 + Sbjct: 106 RHE 108 >UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5D7_9PLAN Length = 150 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 V + I+ AI + R C+ CG PI R +A+P CI C + + Sbjct: 60 EVESRELMQIDRAIEKMR-----AGRYGLCDSCGGPIKLIRLQAVPYAIECIECARRDER 114 Query: 70 QKPAYTGYNRRGSKD 84 ++ GY R G D Sbjct: 115 RESGL-GYRRGGRFD 128 >UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI Length = 119 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D + E + +E I RA +I GE CE C PI R +A P R CI C++ Sbjct: 54 DGLIFEHHHKELE-YIERALEKIENGE-YGICEMCDEPISIQRLKAKPHARFCIICREIV 111 Query: 68 DLQKPA 73 + Sbjct: 112 EKDLKG 117 >UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 Tax=Hydrogenothermaceae RepID=B2V854_SULSY Length = 147 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 11 VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 V +I I+D + R + + CE CG I + R EA+P LCI +E++ Sbjct: 63 VEIEILKAIDDTLERI-----QNGTYGICEVCGKEIEEERLEAVPWTTLCIQHAKEQE 115 >UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia RepID=B2UIX3_RALPJ Length = 120 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 5 WANDDAVNEQINSTIED-AIARARGEIPR---------GESLDECEECGAPIPQARREAI 54 + N D +E++ D + R R E+ + S C +CG IP R +A Sbjct: 43 FENADLADEEVGEQTNDVMLVRYRSELEQLNAARERMQQHSYGICVDCGEAIPFLRLQAQ 102 Query: 55 PGVRLCIHCQQEKDLQK 71 P C+ CQ + + Sbjct: 103 PTAMRCLPCQTACERRW 119 >UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR7_HAHCH Length = 107 Score = 44.0 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 2 ASGWANDDAVN-EQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 A NDD +N ++ + IE + + +A + +GE C CG IP++R + +P L Sbjct: 40 AQERENDDVLNALKVETEIEINQVKKALQRLQQGE-YGVCVACGEDIPESRLQVLPFAEL 98 Query: 60 CIHCQQEKD 68 C+ C + + Sbjct: 99 CVSCASKSE 107 >UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSA8_9FIRM Length = 227 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 + + + A ++ G + C+ CG I R +AIP CI C+++ Sbjct: 73 LLEQVEHALEKVAAG-NYGICDNCGREIGIERLQAIPYAARCIVCEKKY 120 >UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax=Streptomyces RepID=Q9ZBS4_STRCO Length = 108 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59 A ++Q+ S + AI R EI + C CG P+P R E +P R Sbjct: 39 AESGQADDQLMSAQKAAIERVLKEIDEAFARVEEGTYGACLGCGKPVPGERLEILPYTRY 98 Query: 60 CIHCQQE 66 C+ CQ+ Sbjct: 99 CVACQRR 105 >UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae RepID=B4U7Z4_HYDS0 Length = 118 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 ++ IE +AR + CE CGA IP R +A P +CI C++ ++ Sbjct: 64 KLLKKIEYTLARI-----ENGTYGYCEVCGAEIPYERLKARPVTSMCIRCKELEE 113 >UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ Length = 213 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 I++AIA C +CG IP R A P C+ CQ+ + Sbjct: 71 RQIDEAIALINQ-----GKYGLCIDCGQKIPVDRLFANPVAIRCVACQKRVE 117 >UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2 Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU Length = 131 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D VNE +E A+ R +C +CG I R P + C+ CQ+ Sbjct: 67 DRQVNEM--REVEAALKRLADL-----DYGDCIDCGGEIGFDRLMVYPTAQRCVRCQEVH 119 Query: 68 DLQKPAYT 75 + Sbjct: 120 EKTYMHEN 127 >UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTL7_DESBD Length = 133 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 18/43 (41%) Query: 34 ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 +S CE CG I R AIP CI CQ+ D + Sbjct: 80 DSYGICEMCGEHIADRRLLAIPSALFCIECQEMIDRLPGEFGR 122 >UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria RepID=A8PLZ9_9COXI Length = 295 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 1 MASGWANDDAVNEQI-----NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIP 55 M+ ++ N ++ + I A ++ G C CG I R EA P Sbjct: 216 MSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGH-YGFCSSCGVEIGIRRLEARP 274 Query: 56 GVRLCIHCQQEKDLQKPAYTG 76 LCI C+ ++++ G Sbjct: 275 TANLCIDCKTLDEIREKQTGG 295 >UniRef50_Q2BI57 Zn-finger, prokaryotic DksA/TraR C4 type n=1 Tax=Neptuniibacter caesariensis RepID=Q2BI57_9GAMM Length = 123 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + I D +A A I G+ C +CG I +R A P CI CQ + + Sbjct: 66 DEEIADCLA-ALKRIDEGD-FGFCLDCGEEIELSRLRACPTASRCIRCQSVLEAEVRK 121 >UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=B5EG80_GEOBB Length = 118 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 I++A+AR + CE C I +AR +A P LCI C+ E++ ++ Sbjct: 68 IQEALARI-----EAGTFGICEVCEEDISEARLKARPVTTLCIDCKMEQEKKER 116 >UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria RepID=A6T2Z9_JANMA Length = 310 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + + ++ I GE CEE G PI R A P L + QQ ++L++ Y Sbjct: 251 ERKLLKKVQQSLLSIDSGE-YGWCEETGEPIGVPRLLARPTATLSLEAQQRRELKQKLYG 309 >UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia multivorans RepID=A9AKZ2_BURM1 Length = 256 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 22 AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 AI RA+ + G S +C +C P+ AR A P C HCQ + + Sbjct: 200 AIRRAQQRMVDG-SYGDCIDCDGPVGYARLRARPTAERCTHCQALYERR 247 >UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FZV7_9DELT Length = 130 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 34 ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 E CE+C PI + R E +P V +C+ CQ++++ Sbjct: 80 EEYGMCEDCEEPIKRRRLELMPWVSVCVQCQEKRERDGR 118 >UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF Length = 124 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 + I RA +I S C+ G IP AR AIP + + Q + + Sbjct: 66 EYELLRQINRALEKIEES-SYGICDVSGEEIPLARLMAIPYATMTVKAQSQFEK 118 >UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD Length = 72 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M E + + A+ + C +CG I +R +A+P C Sbjct: 1 MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60 Query: 61 IHCQQEKDLQKP 72 I CQQ + + Sbjct: 61 ISCQQLHEESQK 72 >UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK78_THEYD Length = 123 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + I + +I G + CE CGA IP R EA P LCI C+ E++ + Sbjct: 64 ERKLLKKIEKTLEKINNG-TYGICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119 >UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus RepID=Y1497_HAEIN Length = 75 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 9 DAVNEQINSTIEDAIARARGEI-------PRGESLDECEECGAPIPQARREAIPGVRLCI 61 D +NE+ + +++ +A E+ +C ECG PIP R A P C+ Sbjct: 6 DQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPFAHRCV 65 Query: 62 HCQQEKD 68 CQQ+ + Sbjct: 66 SCQQDWE 72 >UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWC9_9PROT Length = 73 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDE-----CEECGAPIPQARREAIPGVRLC 60 D +E+ + ++A+ R R LDE C +C IP AR A+P C Sbjct: 3 DPCDMGSEREEISRQEALDRVRYRPLEAPLLDEEYRRICRDCECLIPSARLAAVPHAVRC 62 Query: 61 IHCQQEKD 68 CQ+E + Sbjct: 63 ASCQEEHE 70 >UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8Q8_KANKD Length = 120 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 8 DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D A++E + + R + R C EC PI R E P LC+ CQ Sbjct: 53 DQAMSEASVERDKKRLVAVRKALKRIEEGQYGFCLECDEPISAKRLEVAPETELCLDCQS 112 Query: 66 EKDLQKPA 73 K+ Sbjct: 113 FKEEHDRK 120 >UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia RepID=B4D0A5_9BACT Length = 233 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 2 ASGWANDDAV----NEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + + D A+ EQ IE+A+ R + CE G PI R EA+P Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRI-----ELGTYGVCEMSGKPIAHPRLEALPF 184 Query: 57 VRLCIHCQQEKDLQKP 72 R + CQ + + Q Sbjct: 185 ARYTVECQSQIEKQGK 200 >UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces RepID=D1X2L9_9ACTO Length = 248 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 +++ E A+AR + CE CG PI +AR +A P LC+ +Q+++ + Sbjct: 195 QEMLEQTERALARL-----EAGTYGLCEICGKPIGKARMQAFPRATLCVEDKQKQERR 247 >UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ Length = 216 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 EQ IE A+ + +CE CG I R +A+P R CI C Sbjct: 70 EQKLREIEIALEKIAN-----GDYGKCESCGKEINNERLDAVPYTRYCISC 115 >UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 Tax=Anaeromyxobacter RepID=A7HEW6_ANADF Length = 130 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 16 NSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + I RA ++ CE+C I R +P C CQ + + Sbjct: 63 QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTE 116 >UniRef50_A1SED9 Putative DnaK suppressor protein n=1 Tax=Nocardioides sp. JS614 RepID=A1SED9_NOCSJ Length = 92 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 AV I ARG + G + C CG IP R E P C+ C Sbjct: 37 AVQRGALKQTIAEIDAARGRLSDG-TFGTCTGCGGAIPADRLEFRPWAGTCVSC 89 >UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YVQ5_STRSW Length = 132 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRLCIH 62 EQ+ D I R EI + C C PIP R E +P R C+ Sbjct: 67 QEAGEQLMPGQRDTIERVLKEIDAAFVRVQEHTYGTCLGCSKPIPVERLEILPYTRFCVP 126 Query: 63 CQQ 65 C++ Sbjct: 127 CRR 129 >UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEFD73 Length = 111 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 8 DDAVNEQINSTIEDA--IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 DD + Q + + I A + G + C+ CG IP R E +P R C+ CQQ Sbjct: 50 DDLLMMQKYAVRQALTDIDAAFTRLDEG-TYGTCQGCGRDIPVERLEILPYARCCVPCQQ 108 >UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 Tax=Gammaproteobacteria RepID=B8GMT5_THISH Length = 132 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 +E A+ R G+S C +CG I R +A P + C CQ + + Sbjct: 75 RDVEAALLRI-----AGQSYGICTDCGDAIAYERLDAYPTAKRCARCQAQHEK 122 >UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7 Tax=Actinomycetales RepID=A0LTP3_ACIC1 Length = 527 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + E A+AR + CE CG PI + R +A P LC+ C+Q ++ + Sbjct: 477 LLVQTEHALARIAD-----GTYGRCENCGNPINKLRLQANPRATLCVSCKQREERR 527 >UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021L0_SOLUE Length = 129 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + DA+ R S C+ C I R +P C+ CQ+ D Sbjct: 63 RGLRDALERIED-----GSYGICQRCDEDISLKRLRVVPWASYCLRCQESAD 109 >UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12HC6_POLSJ Length = 130 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + V+ Q + AI +A+ + G S C +CG PIP R +A P CI CQ + Sbjct: 61 EHVDLQRDQEELRAIQQAQERMADG-SYGGCIDCGQPIPFERLKAQPSASRCIACQTRFE 119 >UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13 Tax=Clostridium RepID=C6Q1P6_9CLOT Length = 201 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 +I I + I +G + +C CG I + R E IP C+ CQ+ Sbjct: 70 ELSIIKKIENSLSNIDKG-TYGKCSICGKDIKEERLEFIPYTDHCVECQK 118 >UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter RepID=Q39WX5_GEOMG Length = 130 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 Q + +++A+ R + C+ECGA I + R P CI CQ ++ Sbjct: 71 QELTRMDEALGRLK-----EGRYGFCDECGAEIDEGRLRVAPYAPCCISCQTRRE 120 >UniRef50_A4F8B9 Possible suppressor protein DnaK n=6 Tax=Actinomycetales RepID=A4F8B9_SACEN Length = 125 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 +A+ RA + G + CE CG+PI R EA+P CI C + Sbjct: 79 EALDRAAARLDDG-TYGLCERCGSPIAPERLEALPATTTCIACATHR 124 >UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria RepID=A4SHJ5_AERS4 Length = 128 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + A I G+ CE CG I R +A P R C+ CQ K+ Sbjct: 73 LQGALRRINEGD-FGYCESCGDEISLKRLQARPESRFCVECQSTKEFNDTH 122 >UniRef50_C5CLF2 Transcriptional regulator, TraR/DksA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CLF2_VARPS Length = 130 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 I AR + GE C +CG IP R EA+P C+ CQQ + P Sbjct: 73 IEAARERLRTGE-FGTCIDCGVQIPLDRLEAMPASARCLECQQRHERTHP 121 >UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUD2_HALO1 Length = 127 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + I+ A+ R + ++DECEECG I R A P LCI C+ E++ + Sbjct: 67 LLNKIDAALERLK-----AGTIDECEECGGEISVQRLIARPVTTLCIDCKSEREQSEEG 120 >UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L9K5_9DELT Length = 120 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D A ++ I + + + R + EC ECG I AR +A P LCI C+ Sbjct: 50 DRAFTLRLRDRERRLIKKIKEALDRIDEGTYGECVECGEDISVARMKARPVTTLCIKCKS 109 Query: 66 EKDLQK 71 ++ + Sbjct: 110 RQEADE 115 >UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus RepID=A8FE57_BACP2 Length = 135 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D V++Q+ + I+ A+ R + CE+ G IP R +A+P R I ++ ++ Sbjct: 33 DQVDDQLEAEIDAALKRMED-----GTYGICEKTGKEIPYERLKAVPYTRYSIDAKKNEE 87 >UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter RepID=B3EAN1_GEOLS Length = 218 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 +I A I GE CEEC IP R + +P R C+ C+ + + + Sbjct: 141 EREKLHSIDEALLRIAEGE-YGICEECDEDIPMGRLKVLPFTRHCVKCKSDLEKFQAQTR 199 Query: 76 GYNRRGS 82 + Sbjct: 200 RIEEDRA 206 >UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria RepID=B3B1J8_ECO57 Length = 75 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 6 ANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 AV E+ + + + R R + C +CG IP AR A+P C++CQ Sbjct: 5 DRAQAVMERGSERALCNRLTRKRQAVDT-PGRRVCADCGGEIPAARLVAVPDAIRCVNCQ 63 Query: 65 QEKDLQ 70 + + Sbjct: 64 NIMEAR 69 >UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbachia RepID=C0R4V6_WOLWR Length = 130 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 5 WANDDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIH 62 ++++D+ NE++ +D + + + + + C+ G I R +A P CI Sbjct: 55 YSDEDSGNEELIKRRKDRKEKIKEALEKIKLGTYGYCDGTGEEIGVERLKANPLAIYCIE 114 Query: 63 CQQEKDLQKPAYT 75 Q+ + +K Y Sbjct: 115 EQERVEKEKNVYN 127 >UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSA0_ACIC1 Length = 113 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 V ++ + +A+ R + C CGAP+P+ R EA P C+ CQ + + Sbjct: 57 EVAQEQRRQVLEALQRI-----ENGTYGLCVSCGAPLPEGRLEAKPEAARCLSCQAKLE 110 >UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus RepID=Q2B4E3_9BACI Length = 252 Score = 42.1 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 D A+ E N + D + +A I G + +C ECG +P R EA+P C+ Sbjct: 64 KDQAIEEHQNEEL-DKVNKALQAIEDG-TYGKCRECGKDLPFERLEAVPTALYCVD 117 >UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UB56_9DELT Length = 116 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 22/42 (52%) Query: 32 RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 R C+ECG PI AR +A P RLCI CQ + + A Sbjct: 72 RETDYGTCDECGDPIGLARLKANPSARLCIVCQSAAEEEDHA 113 >UniRef50_Q3Z6R5 DnaK suppressor protein, putative n=5 Tax=Dehalococcoides RepID=Q3Z6R5_DEHE1 Length = 123 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Query: 15 INSTIEDAIAR---ARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 + + D IA A + RG CE C PI AR EA+P RLC+ C+ + Sbjct: 65 MEKKLLDQIAETEYALDKYDRGV-YGLCEMCKEPIDPARLEALPQARLCMQCKSK 118 >UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMT6_9GAMM Length = 132 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 14 QINSTIED--AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +I+ + + I A ++ G S C +CG I R +A P V C CQ + ++ Sbjct: 66 EIDRHVREIQRIEAALRKLADG-SYGYCMDCGEAIAAQRLQANPAVARCYACQTRFEQEE 124 Query: 72 PA 73 Sbjct: 125 IG 126 >UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria RepID=Q1MS84_LAWIP Length = 133 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + I A I G + CE+CG I R +A P +LCI+C+ ++ Sbjct: 74 ERRLIRKIQSALQRIDDG-TYGVCEDCGDDIGTPRLKARPVTKLCINCKSRQE 125 >UniRef50_A4FJQ8 Putative uncharacterized protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FJQ8_SACEN Length = 56 Score = 42.1 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + + IE A+AR R + C CG+ IP AIP LC+ CQ+ Sbjct: 7 RALADIEVALARMRDGM-----YGLCRACGSDIPLQLLTAIPKTTLCLSCQR 53 >UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBC7_TOLAT Length = 76 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLD-ECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D N+ + ++D +AR ++ + + C +C PIP R +I + C+ CQ Sbjct: 6 DRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVECQALF 65 Query: 68 DLQK 71 + Q+ Sbjct: 66 EEQE 69 >UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15 RepID=Q52PP5_9CAUD Length = 77 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 6 ANDDAVNEQINSTIEDAIARAR--GEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D ++ EDAI + G++P +C +C IP+ R G CIHC Sbjct: 6 DESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIHC 63 Query: 64 QQEKDLQKPAYTG 76 Q + + + Y G Sbjct: 64 QTKFEFNQRNYKG 76 >UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U65_SOLUE Length = 129 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 17/37 (45%) Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 S C C I R +A+P + CI CQ+ D + Sbjct: 76 SYGVCMHCEEDIKPKRLDAVPWTKYCIKCQEAADRHE 112 >UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3 Tax=Proteobacteria RepID=Q0AHN9_NITEC Length = 135 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 I A I G+ C +CG P+ R +A P + C CQ ++ Sbjct: 80 IVAAEDRIATGK-YGLCIDCGEPVRYKRLDAYPTAKRCFTCQVRRER 125 >UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7R7_9RHOB Length = 118 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 +D + I+ A+ R + E C ECG IP+AR P C+ C Sbjct: 63 NDRQRARELQRIDGALQRIK-----EEEYGFCLECGEDIPEARLRVDPAALYCVSC 113 >UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 Tax=Desulfovibrio vulgaris RepID=A1VGY3_DESVV Length = 113 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 10 AVNEQINSTIEDAIARARGEIPR----GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 +VNE +T +A + R C ECG IP AR ++P C++C + Sbjct: 54 SVNEVALATARKRLAGLEYAVKRLGDDDPEYGYCVECGEAIPFARLMSMPEASRCVNCAE 113 >UniRef50_C9NIY3 Transcriptional regulator, TraR/DksA family n=3 Tax=Streptomyces RepID=C9NIY3_9ACTO Length = 131 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 9/70 (12%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE---------CEECGAPIPQARREA 53 + + + +ARAR + + E CE C PIP R E Sbjct: 56 DEHDPEGSSTAFERAHTASLLARARDHLAEVDRALERLERGDYGRCERCREPIPPGRLEV 115 Query: 54 IPGVRLCIHC 63 P C+ C Sbjct: 116 RPAATTCVRC 125 >UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQQ9_SYNAS Length = 86 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 C +CG I AR A+P CI CQ K+ ++ Sbjct: 51 CRDCGEEIQPARLAAMPFAVRCIECQGIKERRERH 85 >UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0K2_DESAD Length = 116 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 36 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 CE+CG I AR +A P R C+ CQ + Sbjct: 76 FGICEDCGEEIALARIKANPTTRFCVSCQSRME 108 >UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 3655 RepID=A4NCL4_HAEIN Length = 78 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 C+ECG IP+AR A P R C+ CQ + Sbjct: 43 CDECGELIPKARLLAQPFARCCVDCQALLEKTNK 76 >UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W4E4_DESAS Length = 231 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 19/88 (21%) Query: 17 STIEDAIARARG-----EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD--- 68 + +DA+ + R + C+ CG I AR A+P LC C++ ++ Sbjct: 65 ALRDDAMLKIRAVEDALKNIEMGKYGICDICGKEIGYARLTALPRTTLCKECKEAQERIP 124 Query: 69 -----------LQKPAYTGYNRRGSKDS 85 LQ P +N R S D+ Sbjct: 125 SRNIRPAEEDILQPPFERSFNDRVSDDA 152 >UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A882_GEMAT Length = 127 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 22 AIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + +A + + + +C +CG I R +A+P R CI C+Q ++ K + Sbjct: 75 HLDQALRRLYKAPATFGKCHQCGEDIAFERLDALPNARYCIACKQREEDAKKS 127 >UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRY0_ALKMQ Length = 224 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 E I RA +I G + EC+ CG IP R E +P +C+ C Sbjct: 68 ENHERYRVTEIDRALEKIQEG-TYGECQLCGQGIPDERLEVMPEANICMVC 117 >UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria RepID=DKSA_HAEIN Length = 145 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I ++ + C+ CG I R EA P LCI C+ ++++ Sbjct: 82 NRDRERKLMKKIEATLKKLDT-DDFGYCDCCGEEIGIRRLEARPTADLCIDCKTLAEIRE 140 Query: 72 PAYTG 76 G Sbjct: 141 KQVAG 145 >UniRef50_UPI0001B515E7 hypothetical protein SvirD4_35899 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B515E7 Length = 118 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 E++ I+ A AR + S C+ C IP R E +P R C+ CQ+ Sbjct: 68 ERVLKEIDAAFARVQDR-----SYGVCQGCSTRIPVERLEILPYTRFCVPCQRN 116 >UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57 Length = 151 Score = 40.9 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I + ++ E CE CG I R EA P LCI C+ ++++ Sbjct: 88 NRDRERKLIKKIEKTLKKV-EDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146 Query: 72 PAYTG 76 G Sbjct: 147 KQMAG 151 >UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=B8J371_DESDA Length = 120 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I A I G + CE+CG I R +A P RLCI+C+ +++ + Sbjct: 61 ERRLIRKIQAALTRIDDG-TYGICEDCGDDISIPRLKARPVTRLCINCKAKQE-EDEHLR 118 Query: 76 G 76 G Sbjct: 119 G 119 >UniRef50_A4XRJ7 Transcriptional regulator, TraR/DksA family n=8 Tax=Pseudomonadaceae RepID=A4XRJ7_PSEMY Length = 103 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 + +A + G S C +CG PI +AR AIP C+ C + Sbjct: 60 VNQALARVADG-SYGLCLKCGEPISEARLNAIPAAEYCLGCASVR 103 >UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7K6_HERAR Length = 106 Score = 40.9 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 DDA+ + + D A R C +CG I AR +A P + C CQ+ Sbjct: 44 DDAMIKMELVELADIEAAHRR--IDNHQYGLCIDCGCTIDYARLQASPTAKRCTQCQRLH 101 Query: 68 DLQ 70 + + Sbjct: 102 EQR 104 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 105 5e-22 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 103 2e-21 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 91 9e-18 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 90 3e-17 UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 74 2e-12 UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass... 73 3e-12 UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu... 73 3e-12 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 71 1e-11 UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop... 71 1e-11 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 71 1e-11 UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 71 1e-11 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 70 2e-11 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 70 2e-11 UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ... 70 2e-11 UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=... 70 2e-11 UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob... 70 3e-11 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 70 3e-11 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 69 3e-11 UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ... 69 4e-11 UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ... 69 5e-11 UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass... 69 6e-11 UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a... 68 6e-11 UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc... 68 7e-11 UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom... 68 8e-11 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 68 1e-10 UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B... 68 1e-10 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 67 1e-10 UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ... 67 2e-10 UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ... 67 2e-10 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 67 2e-10 UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba... 67 2e-10 UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri... 67 2e-10 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 67 2e-10 UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ... 67 2e-10 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 67 2e-10 UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ... 66 2e-10 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 66 2e-10 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 66 3e-10 UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ... 66 4e-10 UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=... 66 4e-10 UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5... 66 4e-10 UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim... 66 4e-10 UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=... 66 4e-10 UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ... 66 5e-10 UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm... 66 5e-10 UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ... 66 5e-10 UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ... 65 5e-10 UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ... 65 6e-10 UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ... 65 6e-10 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 65 1e-09 UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re... 64 1e-09 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 64 1e-09 UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ... 64 1e-09 UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11... 64 1e-09 UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami... 64 2e-09 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 64 2e-09 UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ... 64 2e-09 UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT... 64 2e-09 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 63 2e-09 UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib... 63 2e-09 UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac... 63 2e-09 UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida... 63 3e-09 UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ... 63 3e-09 UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10... 63 3e-09 UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ... 63 3e-09 UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1... 63 3e-09 UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ... 63 4e-09 UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ... 63 4e-09 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 63 4e-09 UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n... 63 4e-09 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 62 4e-09 UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr... 62 4e-09 UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot... 62 4e-09 UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1... 62 4e-09 UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=... 62 5e-09 UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr... 62 5e-09 UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1... 62 5e-09 UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac... 62 5e-09 UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact... 62 6e-09 UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr... 62 6e-09 UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ... 62 7e-09 UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ... 62 7e-09 UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro... 62 7e-09 UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr... 61 8e-09 UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc... 61 8e-09 UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID... 61 8e-09 UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=... 61 9e-09 UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ... 61 9e-09 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 61 1e-08 UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep... 61 1e-08 UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10... 61 1e-08 UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi... 61 1e-08 UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ... 61 1e-08 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 61 1e-08 UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwell... 61 1e-08 UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens... 61 1e-08 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 61 2e-08 UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3... 61 2e-08 UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ... 61 2e-08 UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ... 61 2e-08 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 60 2e-08 UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term... 60 2e-08 UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ... 60 2e-08 UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm... 60 2e-08 UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ... 60 2e-08 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 60 2e-08 UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14... 60 2e-08 UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono... 60 2e-08 UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ... 60 2e-08 UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 ... 60 3e-08 UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 ... 60 3e-08 UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD 60 3e-08 UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ... 60 3e-08 UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R... 60 3e-08 UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy... 60 3e-08 UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ... 60 3e-08 UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1... 60 3e-08 UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1... 59 4e-08 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 59 4e-08 UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge... 59 4e-08 UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3... 59 4e-08 UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi... 59 4e-08 UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 ... 59 5e-08 UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel... 59 5e-08 UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ... 59 6e-08 UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ... 59 6e-08 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 59 6e-08 UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ... 58 7e-08 UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ... 58 7e-08 UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa... 58 7e-08 UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12... 58 8e-08 UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ... 58 8e-08 UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R... 58 8e-08 UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 ... 58 8e-08 UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ... 58 9e-08 UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi... 58 9e-08 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 58 1e-07 UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=... 58 1e-07 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 57 1e-07 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 57 1e-07 UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ... 57 2e-07 UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ... 57 2e-07 UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus ... 57 2e-07 UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 ... 57 2e-07 UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1... 57 2e-07 UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete... 57 2e-07 UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1... 57 2e-07 UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto... 57 2e-07 UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto... 57 2e-07 UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax... 57 2e-07 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 56 2e-07 UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium... 56 2e-07 UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro... 56 3e-07 UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID... 56 3e-07 UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro... 56 3e-07 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 56 3e-07 UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbi... 56 3e-07 UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ... 56 4e-07 UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ... 56 4e-07 UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo... 56 4e-07 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 56 4e-07 UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep... 55 6e-07 UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon... 55 9e-07 UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ... 55 9e-07 UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax... 55 9e-07 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 53 2e-06 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 53 2e-06 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 53 2e-06 UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 53 2e-06 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 53 3e-06 UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1... 53 3e-06 UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 Sequences not found previously or not previously below threshold: UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ... 71 1e-11 UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253... 67 2e-10 UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ... 65 9e-10 UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7... 63 4e-09 UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter... 62 7e-09 UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ... 61 1e-08 UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu... 60 2e-08 UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ... 60 2e-08 UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 ... 60 2e-08 UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther... 60 2e-08 UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte... 60 3e-08 UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5... 59 4e-08 UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ... 59 4e-08 UniRef50_B5JMU6 Putative uncharacterized protein n=1 Tax=Verruco... 59 4e-08 UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus ... 59 6e-08 UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact... 58 8e-08 UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo... 58 9e-08 UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 ... 58 9e-08 UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ... 58 1e-07 UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo... 58 1e-07 UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax... 58 1e-07 UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B... 58 1e-07 UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil... 58 1e-07 UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subt... 57 1e-07 UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ... 57 1e-07 UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ... 57 2e-07 UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria... 57 2e-07 UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br... 57 2e-07 UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 ... 57 2e-07 UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1... 56 2e-07 UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte... 56 2e-07 UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacte... 56 2e-07 UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2... 56 3e-07 UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6... 56 3e-07 UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ... 56 3e-07 UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ... 56 3e-07 UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri... 56 5e-07 UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 ... 56 5e-07 UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati... 56 5e-07 UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=... 56 5e-07 UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 ... 55 5e-07 UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ... 55 6e-07 UniRef50_B9XD69 Transcriptional regulator, TraR/DksA family n=1 ... 55 6e-07 UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 ... 55 6e-07 UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana... 55 6e-07 UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13... 55 7e-07 UniRef50_C5RLG0 Transcriptional regulator, TraR/DksA family n=1 ... 55 9e-07 UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress... 55 9e-07 UniRef50_Q30RD2 Transcriptional regulators, TraR/DksA family n=3... 55 1e-06 UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum ... 55 1e-06 UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ... 55 1e-06 UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1... 55 1e-06 UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68... 55 1e-06 UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbac... 54 1e-06 UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 ... 54 1e-06 UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 ... 54 1e-06 UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID... 54 1e-06 UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ... 54 2e-06 UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 ... 54 2e-06 UniRef50_UPI0001C4239D hypothetical protein BpOF4_09730 n=1 Tax=... 54 2e-06 UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ... 53 2e-06 UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Strepto... 53 2e-06 UniRef50_D1ACI4 Transcriptional regulator, TraR/DksA family n=2 ... 53 2e-06 UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum... 53 3e-06 UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro... 53 3e-06 UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9... 53 4e-06 UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ... 53 4e-06 UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ... 53 4e-06 UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35... 53 4e-06 UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1... 53 4e-06 UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1... 52 4e-06 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 88/88 (100%), Positives = 88/88 (100%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC Sbjct: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 IHCQQEKDLQKPAYTGYNRRGSKDSQLR Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 66/88 (75%), Positives = 76/88 (86%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL CEEC A IP+ARR+AIPGVRLC Sbjct: 1 MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ E D + AY+GYNRRGSKDSQLR Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLD-ECEECGAPIPQARREAIPGVRL 59 MA+G+ D V EQI++T+ DAI RAR + + C ECG IP+ARR IPGV L Sbjct: 1 MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60 Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 C+ CQ ++D ++ A++ YNRR SKDSQLR Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 50/91 (54%), Positives = 58/91 (63%), Gaps = 3/91 (3%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGE---SLDECEECGAPIPQARREAIPGV 57 MA GWA DDAVNEQI + ++AI R R + S CEEC PIP+ARR AIPGV Sbjct: 1 MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60 Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 RLC+ CQ +D G NRRGSKDSQL+ Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59 M+ +V EQ+ T I R R +I G + CE CG PIP+ARR+ PGV L Sbjct: 1 MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 Query: 60 CIHCQQEKDLQKPAYT 75 C+ CQ ++ Q+ Y Sbjct: 58 CVECQAYQERQRKHYA 73 >UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=Q6U9H2_9CAUD Length = 84 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA G+ ++ ++ IN+ +++A+ R +G++ + CEEC PIP+ARR AI C Sbjct: 1 MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAISTA-YC 59 Query: 61 IHCQQEKD 68 + CQ D Sbjct: 60 VQCQTVHD 67 >UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUR8_METI4 Length = 249 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 2 ASGWANDDAVNEQINS-----TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + D A++ I+D++ R + C+ CG PIP R +AIP Sbjct: 143 TDVYDRDFALSLLSQENDSLIEIDDSLKRIEDN-----TYGICQMCGKPIPIIRLQAIPY 197 Query: 57 VRLCIHCQQEKDLQKPAYTGYNR 79 R + CQ++ + +K Sbjct: 198 ARFTVDCQRQLEKEKMYQLRKRW 220 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA D E +E A+A P ESL CEECG PIP+ RR+A PG C Sbjct: 1 MADEI---DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRC 57 Query: 61 IHCQQEKD 68 + CQ + Sbjct: 58 VRCQSGIE 65 >UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia RepID=B4D0A5_9BACT Length = 233 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 2 ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + + D A+ + IE+A+ R + CE G PI R EA+P Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRI-----ELGTYGVCEMSGKPIAHPRLEALPF 184 Query: 57 VRLCIHCQQEKDLQKP 72 R + CQ + + Q Sbjct: 185 ARYTVECQSQIEKQGK 200 >UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQT2_9PLAN Length = 134 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIPR------GESLDECEECGAPIPQARREAIPGVRLCIH 62 D+ ++++S + + +R +I + G S ECE C IP AR +A+P LCI Sbjct: 50 DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109 Query: 63 CQQEKDLQKPAYTGYNRRGSKDSQL 87 CQ+E + + G + R + + Q+ Sbjct: 110 CQRELE--ELGEDGVSWRQNSEDQV 132 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D V +++ E I +AR S CE C PIP+ARR A+PGV LC+ CQ+ Sbjct: 3 DVMDLVQQRVEEERERHIHKARSRQA-APSRFLCESCNGPIPEARRAALPGVELCVTCQE 61 Query: 66 EKDLQKPAYTG 76 K+L+ Y G Sbjct: 62 IKELKSLHYKG 72 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E+ + IA+AR + S C C A IP+ RR +PGV C+ CQQ Sbjct: 3 DLMDIAQERQEMLLAMQIAKARSKPITA-SAFICASCEAEIPEQRRITVPGVIFCVACQQ 61 Query: 66 EKDLQKPAYTGY 77 + +K Y G Sbjct: 62 LHEEKKKHYRGI 73 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I ++R + SL C CG PIP+ RR+ +PG+ C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57 Query: 61 IHCQQEKDLQK 71 CQ++ + Sbjct: 58 KECQEKLERHS 68 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M D NEQ +E+ I + R + SL C CG PIP+ RR+ +PGV C Sbjct: 1 MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57 Query: 61 IHCQQEKDLQKP 72 CQ + ++ Sbjct: 58 TECQAIIERRQR 69 >UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium Ellin514 RepID=B9XR79_9BACT Length = 192 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%) Query: 2 ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + D A+ ++ IE+A+ R + CE G PIP+AR EAIP Sbjct: 87 TDNFDRDFALSLLSSDQDAIYEIEEALKRI-----EKNTYGVCELTGKPIPKARLEAIPW 141 Query: 57 VRLCIHCQQEKDLQK 71 R + Q + + + Sbjct: 142 TRFTVQAQAQLEKEG 156 >UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Propionibacterium acnes RepID=D1YA14_PROAC Length = 159 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 +S + D ++ N+ ++ ++ + CE CG PI +AR +A P +C+ Sbjct: 91 SSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFPRATMCV 150 Query: 62 HCQQEKDLQ 70 C+Q ++ + Sbjct: 151 KCKQRQERR 159 >UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67Q17_SYMTH Length = 269 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + D + + I++ I A + +G + CEECG PI R +A P CI C Sbjct: 56 ERSKDLGLRSHMLRRIQE-IESALQRMDQG-TYGICEECGRPIDPERLKAFPSATTCITC 113 Query: 64 QQEKDLQKPAYTG 76 QQ ++ + + Sbjct: 114 QQRREARPDRFVR 126 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D + E I+ AR S CEEC APIP+ARR AIPGV+ C+ CQ+ Sbjct: 3 DAMDLAQLREQEDRERHISNARSRRHE-VSAFICEECDAPIPEARRRAIPGVQCCVTCQE 61 Query: 66 EKDLQKPAYTG 76 +L+ Y G Sbjct: 62 ILELKSKHYNG 72 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 69.2 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 34/67 (50%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E E AIA AR + RG S ECE+CG PIP AR+ A PG C+ CQ Sbjct: 2 DPFDRAQELEMEQREAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQN 61 Query: 66 EKDLQKP 72 ++ + Sbjct: 62 RRERPRR 68 >UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE Length = 143 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 1 MASGWANDDAVNEQINSTIEDAIA--------RARGEIPRGESLDECEECGAPIPQARRE 52 +A E+ + + A I G + C EC IP R + Sbjct: 53 VADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEG-TYGVCSECDNEIPGKRLK 111 Query: 53 AIPGVRLCIHCQQEKDLQK 71 A+P C+ CQ D ++ Sbjct: 112 AVPWTPYCLDCQDSADRRR 130 >UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4 Length = 242 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+NE +++ I A I G S +CE CG IP R EAIP R CI Sbjct: 60 EREKDIALNEHSEQLLDE-IDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQH 117 Query: 64 QQEKDLQKPA 73 +EK + Sbjct: 118 AEEKSVSNKR 127 >UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=A8R990_9CAUD Length = 85 Score = 68.8 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59 MA G+A D A ++ + ++ AI AR ++ ES C +C IP+ARR+AI GV Sbjct: 1 MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60 Query: 60 CIHCQQEKDLQKPAYTGYNRRGS 82 CI CQ D S Sbjct: 61 CIGCQSMHDEIFKREPRNCWHRS 83 >UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK24_9BACT Length = 147 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 + + + +N + I+ + + E C +C IP+AR +AIP +LC+ Sbjct: 63 SDNFMREINLNVMSDEGIKVQLVQQAIERLDEGKYGRCVDCRDDIPEARLDAIPYAKLCV 122 Query: 62 HCQQEKDLQK 71 C++ ++ Q Sbjct: 123 ACKETRESQG 132 >UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales RepID=A1SL71_NOCSJ Length = 283 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 2 ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A+ + D + I RA I G + CE CG PI + R A P LC Sbjct: 215 ATSFERDHELTVLNSERDKLAQIERALARIDDG-TYGVCESCGNPIGKMRLMAFPRATLC 273 Query: 61 IHCQQEKDLQ 70 + C+Q ++ + Sbjct: 274 MTCKQREERR 283 >UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H2_PELTS Length = 242 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 5 WANDDAVNEQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + + N+ + AI RA +I G + +C+ CG IP R EA+P C C Sbjct: 63 FERSKDFALRENAMLAVAAIDRALAKIENG-TYGKCDNCGREIPLERLEAVPSTVCCKKC 121 Query: 64 QQEKDLQKPAYTG 76 ++ ++ Sbjct: 122 KEAEEKNTRPEAR 134 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA D + E I AR S CEEC APIP+ARR A+PGV LC Sbjct: 1 MADFI---DLAQAREQEDRERHIHHARRRPAS-PSRFLCEECDAPIPEARRMAVPGVALC 56 Query: 61 IHCQQEKDLQKPAYTG 76 I CQ+ +++ G Sbjct: 57 ITCQEIAEMKNKHVRG 72 >UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH Length = 73 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 D EQ ++ I +A G S ECE+CG IP+ RR A+ G C CQ Sbjct: 4 EMDLACEQSQLLLDKQI-KAVTGRYIGVSAFECEDCGREIPEKRRIAVMGCTRCADCQTV 62 Query: 67 KDLQKPAYTGY 77 +L+ Y Sbjct: 63 YELKSKHYRSV 73 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D NE E A+A+ R + P SL CE+C PIP+ARR+ + G CI CQQ Sbjct: 3 DQIDRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQ 61 Query: 66 EKDLQKPAYT 75 + ++ Y Sbjct: 62 IYEYKQKGYR 71 >UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD Length = 213 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 18/87 (20%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +E+ + +EDA++R R + +CE CG PIP R EAIP R C+ C++E + ++ Sbjct: 68 DERALADVEDALSRIRQ-----GTYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122 Query: 72 -------------PAYTGYNRRGSKDS 85 PA+ ++R G+ ++ Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149 >UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM Length = 234 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+ E +T+ AI A ++ G CE C I Q R EAIP CI C Sbjct: 60 ERGKDFALREDAITTL-GAIDDALDKMEEGM-YGICEVCHQEISQDRLEAIPYTTQCIDC 117 Query: 64 QQEKDLQKPAYTGYNRRGSKDSQLR 88 + + ++ R +++ L+ Sbjct: 118 KSRDEHLPKSHE----RSAEEDVLK 138 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + RA + G + CE CG PI +AR +A P LC+ C+Q+ + + Sbjct: 180 RERLEQTERALLRMDAG-TYGVCENCGKPIGKARMQAFPHAILCVDCKQKSERR 232 >UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF Length = 124 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 2 ASGWANDDAVNEQI-NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + ++ + I RA +I S C+ G IP AR AIP + Sbjct: 51 TDTFDRTISLEVTTKEYELLRQINRALEKIEES-SYGICDVSGEEIPLARLMAIPYATMT 109 Query: 61 IHCQQEKDL 69 + Q + + Sbjct: 110 VKAQSQFEK 118 >UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGP7_HELMI Length = 238 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A ++ + +++ IA+A+ I G CE C IP AR A+P LCI C Sbjct: 58 ERGKDLATRDRFSRELDE-IAKAKRRISEGI-YGICERCHQKIPDARMAAMPTATLCIEC 115 Query: 64 QQEKD--LQKPAYTGYNRRGS 82 Q ++ + Sbjct: 116 QSHEEELHPDRHPRPIEEDAA 136 >UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae RepID=Q3ZL39_ESCBL Length = 76 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRL 59 M + ++ E + + + S C +C PIP AR +A+P Sbjct: 1 MTKAFDR---ASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVT 57 Query: 60 CIHCQQEKDLQKPA 73 C+ CQ ++ ++ Sbjct: 58 CVTCQAIREHRRKH 71 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D +D IARA G+I +G C CG PI +ARR+A+P C+ C Sbjct: 1 MTDQLDEAQALEERERDDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDC 59 Query: 64 QQEKDLQKPAYTG 76 Q+ ++ ++ G Sbjct: 60 QESRERWSRSHRG 72 >UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7U4_AMMDK Length = 176 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 A D A+ E ++ I A + G + CE CGAPIP+ R EA+P LC C Sbjct: 35 ERAKDLALREDALLKLQ-VIEDALRRLEEG-TYGYCESCGAPIPRERLEAVPYTTLCHAC 92 Query: 64 QQEKDLQK 71 ++ ++ + Sbjct: 93 KERQEAKG 100 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA + + + I R R ++ G S C++CGAP+P RR IPGVR C Sbjct: 1 MADEIERFQSHQAMLEADR---IQRIRQQL-TGISALFCDDCGAPVPAERRRLIPGVRKC 56 Query: 61 IHCQQEKDLQKPAYTGYN 78 + CQ+ +++Q Y + Sbjct: 57 VGCQEVQEIQARHYRRWQ 74 >UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia RepID=A4XKS6_CALS8 Length = 209 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRR 80 + I +A +I +G + C C IP R AIP CI CQ++ + ++ ++R Sbjct: 75 ELIEKALSKIEKG-NFGYCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRENY--QTDQR 131 Query: 81 GSKDSQL 87 ++ + Sbjct: 132 PIEEKVM 138 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 + D N+ + +AR G+ +G SL CEEC PIP+ARR +PGVRLC+ CQ Sbjct: 2 DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61 Query: 65 QEKDLQKP 72 + Sbjct: 62 TRIEQLAR 69 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + RA + G + CE CG PI +AR +A P LC+ C+Q+++ + Sbjct: 186 REVLSQTERALDRLDAG-TYGLCENCGNPIGKARMQAFPRATLCVECKQKQERR 238 >UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GTL3_9DELT Length = 243 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M + + + +A++ Q S + + I A + G + C+ CG I +AR +A+P R C Sbjct: 48 MDNMYRSINALDSQARSEL-NHIDHALDRMIIG-NYGICDSCGQEISEARLQAVPWARYC 105 Query: 61 IHCQQEKDLQ 70 C + + + Sbjct: 106 RVCVNKAEEK 115 >UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9 Length = 127 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 5 WANDDAVNEQINSTIEDA----IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + N D N + S++E I +A I + + C C I + R AIP LC Sbjct: 54 FDNMDGNNLEALSSVEKKKLHLINQALYRISQ-NTYGNCLACDKSITRERLVAIPYAFLC 112 Query: 61 IHCQQEKDLQKPA 73 I CQ +K+ + Sbjct: 113 ISCQTKKEKKGKR 125 >UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium RepID=A3DD29_CLOTH Length = 212 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + I A ++ +G S +CE CG I + R EA+P RLCI C+ K+ Sbjct: 70 EERLLEDINEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121 >UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZKC1_PLALI Length = 152 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 + + I RA I G C++C IP AR +A+P +C+ CQ+ ++ Sbjct: 61 LETRELMQINRALALIEEGH-YGVCQKCSKAIPLARLQAVPFTTVCVECQRRQEDLGDND 119 Query: 75 T---GYNRRGSKDSQLR 88 + R + D + R Sbjct: 120 EDAYSVDWRKAYDHERR 136 >UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2 Tax=Proteobacteria RepID=Q0BZ89_HYPNA Length = 87 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MASGWA + +V +QI ++ DA+A AR +P G L+ECEECG IP ARR A+ G R C Sbjct: 1 MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88 + CQ ++ Q ++ NRRG+KDSQLR Sbjct: 61 VSCQSVREKQPK-FSSINRRGNKDSQLR 87 >UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD Length = 222 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + D A++++++ I+ AI A G+ CE C IP R EA+P +C C Sbjct: 55 ERSRDVAIHDRLHHRIQ-AIDSALQRYEEGK-YGLCEHCQKEIPLGRLEALPFTTVCTEC 112 Query: 64 QQEKDLQKPAYTGYNRRGSKDSQL 87 + +++++ +R ++ L Sbjct: 113 SRLEEMEEQH--SLHRDSVEEEIL 134 >UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B65 Length = 95 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL---Q 70 ++ + I RA + + + +CE C IP AR A+P C+ CQ+E + Sbjct: 3 ELEAKELAQIERALRRL-KAGTYGKCEVCSIKIPVARLNALPFSTFCVDCQREMERDGGW 61 Query: 71 KPAYTGYNRRGSKD 84 Y D Sbjct: 62 SADYGANGWDRITD 75 >UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2J7_9PLAN Length = 148 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59 A D ++INS + + +R I + CE C PIP R +A+P + Sbjct: 46 AAMDTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVM 105 Query: 60 CIHCQQEKDL 69 CI CQ+E + Sbjct: 106 CIKCQREAEK 115 >UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus RepID=A5UPY9_ROSS1 Length = 121 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + + + A + G + C +CG PIP R EA+P LC+ CQ ++ Sbjct: 58 DLALRSNARELLEQVNAALRRLDEG-TYGICADCGEPIPIERLEALPYATLCVRCQSTRE 116 Query: 69 LQKP 72 + Sbjct: 117 RARR 120 >UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6I0P9_9BACT Length = 136 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 D ++ + ++ ++ +A + G S CE+CG I + R A+P +LCI Sbjct: 55 DMGEGVDLALLEMRNRMKRSVDQALLRLEEG-SYGNCEDCGGEIEEKRLMAMPFAQLCIK 113 Query: 63 CQQEKDLQKPAYTGYNRRGSKD 84 CQ++K+ + R ++ Sbjct: 114 CQRKKEELEKIEREDPLRDGEE 135 >UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM Length = 203 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 N+ + +E+A+ + +I CE CG PIP+ R +A+P C+ C+++ + Sbjct: 69 NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKKKSE 120 >UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter RepID=B3EAN1_GEOLS Length = 218 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 +I A I GE CEEC IP R + +P R C+ C+ + + + Sbjct: 141 EREKLHSIDEALLRIAEGE-YGICEECDEDIPMGRLKVLPFTRHCVKCKSDLEKFQAQTR 199 Query: 76 GYNRRGSK 83 + Sbjct: 200 RIEEDRAY 207 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 2 ASGWANDDAV--NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 + DD + I A + +G CE+CG PIP+ R E +P R Sbjct: 44 SDDGQPDDTALVQADALRQTLEDIEEALLRLRQG-RYGLCEKCGKPIPEGRLEILPYARC 102 Query: 60 CIHCQQEK 67 C+ CQQ + Sbjct: 103 CVSCQQRR 110 >UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM Length = 137 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 2 ASGWANDDAV-NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A+ + DD + + Q +++ I A + +G CEE G I R + P R C Sbjct: 54 ANSYEADDIIMSAQKRNSLLSEIDEALERMEQGV-YGYCEETGDEIGFGRLDLEPTARYC 112 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKD 84 + Q+ D + S++ Sbjct: 113 VDVQERLDKKNRFLRSPGSVNSEE 136 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E+ +E IA AR + + S C +C IP+ RR AIPGV C+ CQ+ Sbjct: 3 DTIDMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQE 61 Query: 66 EKDLQKPAY 74 + Q+ + Sbjct: 62 VSEAQQRHF 70 >UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCE7_CATAD Length = 275 Score = 63.8 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + RA + ++ CE CG P+ + R +A P LC+ C+Q+++ + Sbjct: 223 REMLQQTERALARLA-ADTYGVCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275 >UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas RepID=A5W685_PSEP1 Length = 154 Score = 63.8 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 ++++ +E A+ R ES C++ G PI R P + CI Q+ + Sbjct: 94 DQRLLPQLEMALDRIAD-----ESFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQLD 148 Query: 72 PAYTGY 77 Sbjct: 149 RHQRQV 154 >UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788757 Length = 187 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+ E + +E I A + +GE C ECG IP R EA+P C+ Sbjct: 62 ERGRDLAIQETLERELE-QIDAALQRMDQGE-YGTCAECGREIPYERLEALPYTAYCLEH 119 Query: 64 QQEKDL 69 KD+ Sbjct: 120 TPRKDI 125 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 D + I + ++A + I P S C++C + IP+ARR ++PGVRLC+ C Sbjct: 3 DIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVDCA 62 Query: 65 QEKDLQKPAYT 75 ++++ Sbjct: 63 SLQEIKGRHQR 73 >UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales RepID=C1DXT7_SULAA Length = 144 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 Q + I A +I G CEECGA I + R EAIP VRLCI C Q +++ Sbjct: 56 QADRETLYLIDLALRKIDSGI-YGICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI---- 110 Query: 74 YTGYNRRGSKD 84 + +R ++ Sbjct: 111 VRQFQQRNEEE 121 >UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog n=1 Tax=Clostridium acetobutylicum RepID=Q97H97_CLOAB Length = 200 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + + I A ++ G CE CG PI + R E +P C+ CQ + + P Sbjct: 70 EEALLNKIGNAIDKVEHGG-YGICEVCGKPISEERLEFVPYAENCVECQNKLNDSMPREK 128 Query: 76 GYNRRGSKDSQL 87 N R ++ L Sbjct: 129 --NDRPPEEDVL 138 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA EQ ++ A+ + R S CE+C PIP+ RR AI G C Sbjct: 1 MADDIDR---ATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETC 57 Query: 61 IHCQQEKDLQK 71 IHCQ ++ ++ Sbjct: 58 IHCQSLREQRR 68 >UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGE3_THEYD Length = 129 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + I I A ++ G + CE CG IP+ R + +P C CQ++ ++ + Sbjct: 64 QLSTHRDILKKIEEALRKLEEG-TYGICEMCGDEIPEERLKILPFAIYCRDCQEKIEMIE 122 Query: 72 P 72 Sbjct: 123 K 123 >UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP2_OCEIH Length = 224 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+ E +ED I A I G + C CG IP R EAIP C+ Sbjct: 60 EREKDIALQEHTEKELED-INAALHAIEEG-TYGICTVCGEDIPHERLEAIPTTDRCVKH 117 Query: 64 QQE--KDLQKPAYTG 76 E ++ +P Sbjct: 118 ANEGGRERYRPTEEQ 132 >UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG86_9BACT Length = 148 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + A I G + CE CG I + R E IP C+ C+++ + +K Sbjct: 87 ESEREKIRQLNEALQRISDG-TYGICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKRR 145 Query: 74 YTG 76 Sbjct: 146 QKR 148 >UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N407_9BACT Length = 133 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + IEDAI R +C+ECG PI + R P C+ C++ + Q Sbjct: 76 DVLRLIEDAIKRLVD-----GEYGKCQECGEPISEGRLAIRPYAVYCVKCKEMHEKQGWH 130 >UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10 Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX Length = 206 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 I I A + G + C C PI + R EA+P LC C + DL+ Sbjct: 72 EKYILRQIEDAFKRMEIG-TYGICAHCHKPIEEERLEALPYTVLCAECAKNNDLELKDLK 130 Query: 76 GYNRRGSKDSQLR 88 N R +++ ++ Sbjct: 131 --NSRPNEERMIK 141 >UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 Tax=Cystobacterineae RepID=A7H9X1_ANADF Length = 120 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I +A I G + CE C I R EA P LCI C++E++ ++ ++ Sbjct: 62 EKFLLAKIDKALARIENG-TFGICERCEEEISVKRLEARPVTTLCIRCKEEQEQKEKSFG 120 >UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3S7_ACIC5 Length = 139 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 1 MASGWANDDAVNEQINSTI----------EDAIARARGEIPRGESLDECEECGAPIPQAR 50 M + D + + ++ R E S EC ECG I R Sbjct: 51 MENRIDPADQAVMSYQQELIFSQGTNKHTQLSLVRLALERLEDGSYGECAECGEDISPRR 110 Query: 51 REAIPGVRLCIHCQQEKD 68 EA+P CI CQ++ + Sbjct: 111 LEAVPWTPYCISCQEKVE 128 >UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE Length = 136 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 A ++ +V+ + ++DA+ R S +C CG PI AR EAIP C Sbjct: 64 ADEGLHNSSVDSETLQQVDDALRRI-----EQGSYGKCVICGKPIEPARLEAIPWTPYCK 118 Query: 62 HCQQEKD 68 Q+ + Sbjct: 119 ADQERLE 125 >UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L3E3_9DELT Length = 131 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + + I A + G+ C+ECG I AR A P LC+HC+ + Sbjct: 59 ERDRQLIGEINEALARVKDGD-YGICQECGEEIGLARLRAQPTATLCVHCKSMLEEMGRP 117 Query: 74 Y 74 Y Sbjct: 118 Y 118 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M + + E A+ + R + S CE+C APIP+ RR+ I GV C Sbjct: 1 MTDQFDR---AQQLEEMQREIALKKHR--TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRC 55 Query: 61 IHCQQEKDLQKPAYT 75 + CQQ ++Q+ + Sbjct: 56 VTCQQRFEIQQRNFR 70 >UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7 Tax=Actinomycetales RepID=A0LTP3_ACIC1 Length = 527 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + A I G + CE CG PI + R +A P LC+ C+Q ++ + Sbjct: 475 RDLLVQTEHALARIADG-TYGRCENCGNPINKLRLQANPRATLCVSCKQREERR 527 >UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2 Tax=Betaproteobacteria RepID=A1K6D2_AZOSB Length = 135 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 +++ + + D I AR I GE C +CG IP AR EA P C+ CQ Sbjct: 60 EHENLAVVRDVRELRD-IEAARERIAEGE-AGICVDCGEEIPFARLEAQPTATRCVRCQS 117 Query: 66 EKDL 69 + Sbjct: 118 LYER 121 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRG-ESLDECEECGAPIPQARREAIPGVRL 59 M+ D +E+ IA R E+ G SL CE CG I + RR+ +PGV+L Sbjct: 1 MSDDID-DTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQL 59 Query: 60 CIHCQQEKDLQK 71 C+ CQ+ + + Sbjct: 60 CVGCQEVAEHWE 71 >UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM Length = 73 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGE-----SLDECEECGAPIPQARREAIPGVRLC 60 D +Q + + AIA + C +CG IP R +A+P V C Sbjct: 2 DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61 Query: 61 IHCQQEKDL 69 + CQ +K+ Sbjct: 62 VSCQDKKER 70 >UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT Length = 116 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +Q IE+A+ R S CE C PI + R + P + CI C++ + ++ Sbjct: 61 QKQELKEIEEALKRI-----EEGSYGICEMCDEPIQEERLKIKPYAKYCIICREIIEKEE 115 Query: 72 P 72 Sbjct: 116 K 116 >UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V43_DESDG Length = 149 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + A+ A I G CEECG I +AR +A P LCIHCQ++++ Sbjct: 76 DVALRGRLARQLAAVESALHRIATGG-FGRCEECGDEIGEARLKANPTTTLCIHCQEDRE 134 Query: 69 LQKPA 73 + Sbjct: 135 AEAAR 139 >UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas putida KT2440 RepID=Q88IG2_PSEPK Length = 72 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D N++ ++ ++ AR P ESL++C CG IP+ RR A+ G + CI CQ Sbjct: 3 DIADLANDRAQWHLDLVLS-ARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQG 61 Query: 66 EKDLQKPAYTG 76 + + Y G Sbjct: 62 FFEKKGARYAG 72 >UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIH5_9PROT Length = 118 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 ++ IE A+ R + CE CG I R + P RLCI C+++ + Q Sbjct: 62 QQKAFLEIESALKRI-----ENGTYGLCESCGEQISLERLKVNPEARLCISCKEQAEKQN 116 Query: 72 PA 73 + Sbjct: 117 RS 118 >UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA Length = 251 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+ + + + I A I G + C CG IP+ R EAIP LC+ C Sbjct: 59 ERGKDLALRDNVQVQLRK-IEDALQSIAEG-TYGYCRRCGREIPRERLEAIPETTLCLEC 116 Query: 64 QQEKDLQKPAYTG 76 +++ + + ++ Sbjct: 117 RRKMEGKADKHSR 129 >UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae RepID=Y250_AQUAE Length = 145 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 N V I+ A+ + + CE CG IP+ R AIP R C C + Sbjct: 58 DNLSNVEIATLREIDYALEKI-----EKGTYGICERCGEEIPEPRLCAIPWTRYCAKCAE 112 Query: 66 EKDLQKPAY 74 E + + Y Sbjct: 113 EVERESGTY 121 >UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria RepID=Q2LSS1_SYNAS Length = 150 Score = 61.9 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 2 ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + + + + + + A I GE CE CG PI + R A P LC Sbjct: 76 SLESDRNFELRMRDRERKLIAKMQEAIKRIDEGE-FGLCEVCGGPISEKRLMARPVTTLC 134 Query: 61 IHCQQEKDLQKP 72 I C+ +++ + Sbjct: 135 IDCKTKQEKLEK 146 >UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales RepID=A7K6F3_VIBSE Length = 208 Score = 61.9 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I + +I + CE CG I R EA P LCI C+ ++++ Sbjct: 85 NRDRERRLIKKIEKTLDKIKE-DDFGFCESCGVEIGVRRLEARPTADLCIDCKTLAEIKE 143 Query: 72 PAYTGYNRR 80 + Sbjct: 144 KQMLRQQQD 152 >UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C120_SPHTD Length = 130 Score = 61.9 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + I RA ++ +GE CE C PIP R EA+P R CI CQ + D ++ Sbjct: 71 LADRKVLIERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125 >UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5D7_9PLAN Length = 150 Score = 61.9 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 +A A + ++ S I RA ++ G C+ CG PI R +A+P C Sbjct: 47 LADANAEIGSQMVEVESRELMQIDRAIEKMRAG-RYGLCDSCGGPIKLIRLQAVPYAIEC 105 Query: 61 IHCQQEKDLQKPAYTGYNRRGSKD 84 I C + + ++ GY R G D Sbjct: 106 IECARRDERRESGL-GYRRGGRFD 128 >UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria RepID=A6T2Z9_JANMA Length = 310 Score = 61.9 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 1 MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52 + E + + ++ I GE CEE G PI R Sbjct: 228 VPDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGE-YGWCEETGEPIGVPRLL 286 Query: 53 AIPGVRLCIHCQQEKDLQKPAYT 75 A P L + QQ ++L++ Y Sbjct: 287 ARPTATLSLEAQQRRELKQKLYG 309 >UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria RepID=DKSA_BUCBP Length = 151 Score = 61.9 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + + I + ++ + CE CG I R EA P LCI C+ ++++ Sbjct: 92 ERKLIEKIEKTLKKVENKD-FGYCESCGIEIGIKRLEARPTANLCIDCKTLSEIREKQIL 150 Query: 76 G 76 G Sbjct: 151 G 151 >UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK suppressor protein n=2 Tax=Brachyspira RepID=C0QW50_BRAHW Length = 121 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 Q D + A I G + +C +C I + R A+P C++C + + +K Sbjct: 60 QKEKDKLDMLNNALKRIEEG-TYGKCIDCKEEINEERLTALPYTLRCVNCMSKYEDKKRR 118 Query: 74 YT 75 Sbjct: 119 EK 120 >UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales RepID=A4XDN2_SALTO Length = 139 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 5 WANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + + ++ + RA + G CE CG PIP R A P LC+ C Sbjct: 74 FEREQEISLANSILERITQVERALERLDEGG-YGWCERCGNPIPVERLAAFPSATLCVTC 132 Query: 64 QQEKDLQ 70 +Q + + Sbjct: 133 KQLAERR 139 >UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS Length = 120 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + IE A+ R +C +CG IP+ R AIP +CI CQ ++ ++ Sbjct: 63 DLRCLQQIESALLRI-----EQGRYGKCADCGESIPEDRLRAIPYSLMCIECQSARESKR 117 Query: 72 PAY 74 A+ Sbjct: 118 RAF 120 >UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FUG7_PSYA2 Length = 66 Score = 61.5 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 MA N+ ++ T+ ++RA SL EC ECG IP R +A+ GV LC Sbjct: 1 MADDADR---ANDYVDLTMAHCLSRA--PKFDKPSLTECMECGEDIPAKR-QAMGGVTLC 54 Query: 61 IHCQQEKDLQKP 72 + CQ + + Sbjct: 55 VDCQSVFEKRGK 66 >UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGY5_SYNFM Length = 257 Score = 61.5 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + I A G+I GE CE CG I R EAIP RLC+ C ++ + + Sbjct: 65 EQIDLALGKIAIGE-YGICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 + + + EQ + A R ES + E CG PIP+ RR A+ G R C+ Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61 Query: 63 CQQEKDL 69 CQ+ ++ Sbjct: 62 CQERREQ 68 >UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI Length = 119 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M+ D + E + +E I RA +I GE CE C PI R +A P R C Sbjct: 47 MSMKNTLDGLIFEHHHKELEY-IERALEKIENGE-YGICEMCDEPISIQRLKAKPHARFC 104 Query: 61 IHCQQEKDLQKPA 73 I C++ + Sbjct: 105 IICREIVEKDLKG 117 >UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10 Tax=Actinomycetales RepID=A6WCW5_KINRD Length = 159 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + + RA + G CE C P+ +AR +A P V LC+ C+ + + Sbjct: 107 RELLEQTQRALVRLGSGV-YGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159 >UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UR73_RHOBA Length = 140 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59 A D V +++NS + + +R I +CE+CG PIP R +AIP Sbjct: 46 AAADTVQDELNSQLVEVESRELLAIEEAIARFEEGRFGDCEDCGKPIPLNRLKAIPYAVD 105 Query: 60 CIHCQQEKDLQ 70 CI+C++ + + Sbjct: 106 CINCRRAAERE 116 >UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 Tax=Deltaproteobacteria RepID=A1AL35_PELPD Length = 118 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + I A I GE CEECG I +AR + P LCI+C+ E + ++ Sbjct: 61 ERKLINKIKEALSRIDSGE-FGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEKR 117 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D NE+ + ++ A+A+ R S CE+CG IP+ARR+A PG CI CQ+ Sbjct: 2 DVIDQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQE 60 Query: 66 EKDLQKPA 73 ++ Sbjct: 61 LREHPARR 68 >UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ Length = 216 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + EQ IE A+ + +CE CG I R +A+P R CI C Sbjct: 67 NLREQKLREIEIALEKIAN-----GDYGKCESCGKEINNERLDAVPYTRYCISC 115 >UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q48AS1_COLP3 Length = 104 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 2 ASGWANDDAVNE-QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 A+ ND ++E + +E ++ ++ + C EC PI R A+P C Sbjct: 40 ATETENDGVLDEIHHEAKLELSLVKSALKRITEGLYGSCVECEEPINPDRLSALPYTTKC 99 Query: 61 IHCQ 64 I C Sbjct: 100 IKCA 103 >UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR7_HAHCH Length = 107 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 2 ASGWANDDAVN-EQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 A NDD +N ++ + IE + + +A + +GE C CG IP++R + +P L Sbjct: 40 AQERENDDVLNALKVETEIEINQVKKALQRLQQGE-YGVCVACGEDIPESRLQVLPFAEL 98 Query: 60 CIHCQQEKD 68 C+ C + + Sbjct: 99 CVSCASKSE 107 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E +I AR + +L +C++CG PIP+ARR+A+PG C+ CQ+ Sbjct: 3 DPTDRAQEAAADYTRFSIEAARSRGSQS-TLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61 Query: 66 EKDLQK 71 + ++ Sbjct: 62 TYEQRR 67 >UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium RepID=A0Q071_CLONN Length = 206 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 E+ I+ + ++ G + C C IP R EA+P + C+HC+ +D Sbjct: 63 GIALEKAELEKLHEISESLYDMEHG-TYGICRICKNQIPDDRLEAVPYAKYCVHCKNNQD 121 Query: 69 L 69 Sbjct: 122 K 122 >UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales RepID=D0LZD2_HALO1 Length = 124 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 ++ + + A ++ G + CE C PI + R EA P LCI C++ ++ + + Sbjct: 66 EKSLLNKLDLALRKLGEG-TFGICEVCEEPIGKKRLEARPETTLCIQCKEAQERDERVFG 124 >UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSA8_9FIRM Length = 227 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%) Query: 5 WAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + D + + + A ++ G + C+ CG I R +AIP CI C Sbjct: 58 FERSKDLALRDNAHLLLEQVEHALEKVAAG-NYGICDNCGREIGIERLQAIPYAARCIVC 116 Query: 64 QQEKDLQKPAYTGYNRRGSKDSQLR 88 + + + R ++ L+ Sbjct: 117 ----EKKYGDKDVASPRPLEEDVLQ 137 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D NE + + ++ +A AR + ES ++CE+CG PIPQARR A PG CI CQ Sbjct: 3 DLADHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQD 61 Query: 66 EKDLQ 70 + + Sbjct: 62 RHERR 66 >UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus RepID=Q2B4E3_9BACI Length = 252 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D A+ E N ++ + +A I G + +C ECG +P R EA+P C+ Sbjct: 61 EREKDQAIEEHQNEELDK-VNKALQAIEDG-TYGKCRECGKDLPFERLEAVPTALYCVD- 117 Query: 64 QQEKDLQKPAYTGYNRRGSKDSQL 87 P+ + R +++ L Sbjct: 118 ------HAPSQHPASDRPAEEDVL 135 >UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG Length = 119 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + DAI A +I + + +CE C I R + IP + CI CQ+E + Sbjct: 61 SDKMTLDAINDALVKIEK-NAYGKCEGCSNNILLERLKVIPWAKYCIQCQEESE 113 >UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces RepID=D1X2L9_9ACTO Length = 248 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + RA + + CE CG PI +AR +A P LC+ +Q+++ + Sbjct: 195 QEMLEQTERALARL-EAGTYGLCEICGKPIGKARMQAFPRATLCVEDKQKQERRG 248 >UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0C3_STRRD Length = 110 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 A + + +++ A+ R + C+ CG IP R +A P R C+ CQ+ Sbjct: 46 AKSGLLADIVSAERNLAVVRQALRDVTELTYGRCDGCGLAIPFERLKARPLARFCMLCQR 105 Query: 66 EKDLQ 70 + + Sbjct: 106 RHESR 110 >UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2ULP7_AKKM8 Length = 207 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 2 ASGWANDDAVNEQI-NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + + D A++ I +A I G + CE IP R EAIP RL Sbjct: 106 SDAYDRDFALSLLSKEQDGLYEIEQALARIDNG-TYGICEMSYKVIPILRLEAIPFARLT 164 Query: 61 IHCQQEKDLQKPAYTGYNRR 80 + CQ + + +K + R Sbjct: 165 VECQAQWEKEKGQNARFRPR 184 >UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria RepID=A5EW31_DICNV Length = 143 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I +A I +G CE+C I R EA P LCI C+ + ++ ++ Sbjct: 80 ERKLLRKIDKALERIKQGH-FGYCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF- 137 Query: 76 GYNRRGS 82 YN R Sbjct: 138 -YNERNE 143 >UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema denticola RepID=Q73KX9_TREDE Length = 119 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 N + I+ A+ R R +C C IP+ R +A+P CIH Sbjct: 54 DMLEFIGENNVKKLQKIDSALERIR-----EGKYGKCITCKEQIPEDRLKALPYALKCIH 108 Query: 63 CQQEKDLQ 70 CQ + + + Sbjct: 109 CQAKSEKK 116 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRLC 60 A D + EQ + I AR G+S CE CG IP R++AIPGVR C Sbjct: 13 ALMADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTC 72 Query: 61 IHCQQEKDLQKPAYTG 76 CQ+ ++++ Y Sbjct: 73 TECQRVLEIRQKQYLR 88 >UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae RepID=C9S0U4_GEOSY Length = 269 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 D A+ E + + I RA G I G + C CG PIP R EA+P C Sbjct: 61 EREKDLALKEHAERELRE-IERALGAIADG-TYGTCRVCGRPIPYERLEALPTTLYCRE 117 >UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK78_THEYD Length = 123 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 2 ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + + + + I + +I G + CE CGA IP R EA P LC Sbjct: 49 SQEIDRSFLLRLRDRERKLLKKIEKTLEKINNG-TYGICEACGAEIPIERLEARPVTDLC 107 Query: 61 IHCQQEKDLQKP 72 I C+ E++ + Sbjct: 108 IECKTEQEEAEK 119 >UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae RepID=A4X6U9_SALTO Length = 132 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + A + G + CE CGA IP R E P C+ C+Q ++ + Sbjct: 75 RTILDRRAQFEHALTRLEEG-TYGFCEGCGASIPVERLEIFPSATTCVTCKQTRERRA 131 >UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWL7_HALOH Length = 228 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYN 78 + + + A + G + CE+CG I + R E IP LC CQ +++ + YN Sbjct: 72 LLNKVENALNRLEEG-NYGLCEKCGQEIREERLETIPYATLCERCQAKEEGKD-----YN 125 Query: 79 RRGSKDSQ 86 R + + Sbjct: 126 RDRPLEEE 133 >UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C95_SOLUE Length = 128 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 + ++ + +E+A+ R C C I + R +A+P R C+ CQ E Sbjct: 59 RMNGLDYRQLRMVEEALDRL-----ESGDFGICLACDESIAEKRLQALPWARYCVKCQDE 113 Query: 67 K 67 Sbjct: 114 M 114 >UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 Tax=Shewanella RepID=B1KFH6_SHEWM Length = 131 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 6 ANDDAVNEQINST-----IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + DA+ +Q + ++ I R + + C ECG PI R P +C Sbjct: 62 SRIDAIQQQEMAQASEVLMQQHIVRIKQIFLDTDEYGFCLECGEPIGLGRLTIHPTAEMC 121 Query: 61 IHCQQEKD 68 I CQ E + Sbjct: 122 IGCQSEAE 129 >UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD Length = 75 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 1 MAS-GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 M D + +E +++R + G S EC ECG+ IP+ RRE + GV Sbjct: 1 MTDCSADPLDRAAALSQAHLEVSLSRI--KKFEGVSAHECVECGSEIPKKRRELLQGVTD 58 Query: 60 CIHCQQEKDLQKPAYTG 76 C+ C K+ Y Sbjct: 59 CVDCAAIKETLSKNYMR 75 >UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 Tax=Planctomycetaceae RepID=D2R7B0_9PLAN Length = 123 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 1 MASGWANDDAVNEQINSTIE------DAIARARGEIPRGESLDECEECGAPIPQARREAI 54 MA D+ E S +E + I A I + C ECG IP+AR E + Sbjct: 50 MADV-GTDNFEQEFTLSLMEHDGSTLEQIEAALERI-EAGAYGVCTECGCKIPKARLEVL 107 Query: 55 PGVRLCIHCQQEK 67 P C+ C ++ Sbjct: 108 PYTAHCVKCAEKA 120 >UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT Length = 202 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + I + ++ CE CG I R EA P CI C+ ++++ Sbjct: 141 ERERKLIAKIDLSLKDLEDNL-YGYCESCGVEIGIKRLEARPTATKCIDCKTVDEIKEKQ 199 Query: 74 YTG 76 G Sbjct: 200 QFG 202 >UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter RepID=A1VXK8_CAMJJ Length = 120 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + IED++ + + + CE C I R + P R CI C+Q + K Sbjct: 64 EELIEIEDSLDKIKN-----GTYGICESCDDEIDSQRLKVKPHARYCITCRQIAEQGKKH 118 Query: 74 YT 75 Sbjct: 119 EN 120 >UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE Length = 149 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 15 INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 I+ + IA A + G C EC PI R +A+P R C+ CQ++ Sbjct: 80 IDMKLLREIADALHRMDTGH-YGVCPECEEPISAKRLDAVPWARYCVTCQEKI 131 >UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria RepID=A8PLZ9_9COXI Length = 295 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%) Query: 1 MASGWANDDAVNEQI-----NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIP 55 M+ ++ N ++ + I A ++ G C CG I R EA P Sbjct: 216 MSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGH-YGFCSSCGVEIGIRRLEARP 274 Query: 56 GVRLCIHCQQEKDLQKPAYTG 76 LCI C+ ++++ G Sbjct: 275 TANLCIDCKTLDEIREKQTGG 295 >UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL Length = 121 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Query: 2 ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + + N++ + +E A+ R + EC CG+ I R EA+P R C Sbjct: 51 TKEFLFTQSANDRNLLQMVEGALIRI-----GEGTYGECVSCGSEINSKRLEAVPWARYC 105 Query: 61 IHCQQEKDL 69 I CQ++ + Sbjct: 106 IGCQEKIEK 114 >UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58 Tax=Betaproteobacteria RepID=Q21SV6_RHOFD Length = 429 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 1 MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52 + E + I ++ I G+ C+E G I R Sbjct: 347 VPDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGD-YGYCDETGEAIGVGRLL 405 Query: 53 AIPGVRLCIHCQQEKDLQKPAYT 75 A P L + QQ ++L++ + Sbjct: 406 ARPTANLSLEAQQRRELKQKMFG 428 >UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEV8_RALME Length = 123 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 DA+ E +ED IA ARG + G S C EC PIP R +A P + C CQ+E Sbjct: 57 QADAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTACQRE 114 Query: 67 KDLQK 71 + ++ Sbjct: 115 HEQKR 119 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIP-------RGESLDEC--EECGAPIPQARR 51 M + + +DA+ +G S C + CG PIP+ RR Sbjct: 1 MPDDFDR---AQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRR 57 Query: 52 EAIPGVRLCIHCQQEKDLQK 71 +A+PGV+ C+ CQQ + + Sbjct: 58 KALPGVKFCVECQQRLEKKG 77 >UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE71_ELUMP Length = 258 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 2 ASGWANDDAVNEQINSTI-----------EDAIARARGEIPRGESLDECEECGAPIPQAR 50 A D + ++ I D I A +I +G +CE C +P+ R Sbjct: 180 AEVGDPIDTATQSLDKEILFEQTDNSHTQIDQIESALRKIDKGI-YGKCENCRQLLPKKR 238 Query: 51 REAIPGVRLCIHCQQEKD 68 +A+P R C+ CQ K+ Sbjct: 239 IKALPFARYCVVCQSSKE 256 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D +E + A++ A S + C ECGAPIP+ RR A+PGV LC+ CQ K+ Sbjct: 6 DMGHEAEELARKAALSMAGTRRADAPSRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65 >UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V318_9AQUI Length = 133 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 I A I G + CE CG PI + R EAIP LC +E + Sbjct: 51 KKIDEALERISEG-TYGYCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98 >UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W4E4_DESAS Length = 231 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + D A+ + I A+ A I G+ C+ CG I AR A+P LC C Sbjct: 59 ERSKDFALRDDAMLKI-RAVEDALKNIEMGK-YGICDICGKEIGYARLTALPRTTLCKEC 116 Query: 64 QQEKDLQKPAYTGYNRRGSKDSQLR 88 ++ ++ N R +++ L+ Sbjct: 117 KEAQERIPSR----NIRPAEEDILQ 137 >UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMB8_SYNFM Length = 122 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 NE++ I + + R R CEECG I R +A P CI C++ + + Sbjct: 63 NERLVQEILNGLQRIR-----TGDFGVCEECGKDIELNRLKAHPSATQCIKCKKAAERKA 117 Query: 72 P 72 Sbjct: 118 R 118 >UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5L2_SPHTD Length = 132 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + + ++ A+ R + C +CG I AR +A+P C+ CQ + + Sbjct: 77 DAELAEVDAALDRL-----ERGTYGVCIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129 >UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT Length = 123 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + ++ Q E + + C EC I + R +P RLC+ C Sbjct: 47 DLEREMGISLQEKRNRERQMIDEALVSLEEGTYGICVECNTEISEKRLAVMPFARLCVEC 106 Query: 64 QQEKDLQKPAYTGYNR 79 Q++ +L + G R Sbjct: 107 QEKIELLEKIERGEQR 122 >UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae RepID=Q221D7_RHOFD Length = 124 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 10/79 (12%) Query: 7 NDDAVNEQINSTIEDAIAR----------ARGEIPRGESLDECEECGAPIPQARREAIPG 56 D E +E A+ A S C +CG IP AR A P Sbjct: 46 EDSTAQESSARELEFALDARDSEELDRLDAALRRIEDGSYGLCVDCGVGIPAARLHAAPD 105 Query: 57 VRLCIHCQQEKDLQKPAYT 75 CI CQ++ + + Sbjct: 106 ALRCIACQEKLEKAQARQA 124 >UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q506_9BACT Length = 140 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 10/72 (13%) Query: 2 ASGWANDDAVN-----EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + + + E +I+DA+ R + CE C I + R +A+P Sbjct: 70 TDNYERELMIELMQSGEDSVRSIDDALERI-----EEGTFGICEACEKKINRERLKAVPY 124 Query: 57 VRLCIHCQQEKD 68 LC++CQ+E++ Sbjct: 125 ASLCVNCQREEE 136 >UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWK7_ARCB4 Length = 123 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 IE+A+ + + C+ CG IP R +A P + C C+ + + Sbjct: 63 QLDELKQIEEALKKI-----TLGTYGICDMCGINIPLGRLKAKPFAKFCTECRTVYEQEN 117 >UniRef50_B5JMU6 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU6_9BACT Length = 280 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 10/73 (13%) Query: 2 ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + D A+ + IE+AI R + CE G I + R A+P Sbjct: 181 TDTFDRDFALSMVSSEQDALQEIEEAIDRIFK-----GTYGICEMTGKQIREERLMAVPF 235 Query: 57 VRLCIHCQQEKDL 69 R + Q++ + Sbjct: 236 TRYSMKTQEQIEK 248 >UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MH72_ALKOO Length = 226 Score = 59.2 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 15/85 (17%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE------ 66 E I A +I G + C+ CG I + R E +P CI C ++ Sbjct: 68 ENHEKNRLLEIDDAVQKINEG-TYGNCQICGNKILEERLEIMPASITCIDCAEKEIESYK 126 Query: 67 --------KDLQKPAYTGYNRRGSK 83 +++ PA+ N+ G Sbjct: 127 LSTDRSVEEEILSPAFERNNKDGED 151 >UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MQQ3_WOLSU Length = 113 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGES--LDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D + +++ +E + + + R +S C+ C PIP R A+P +C+ C Sbjct: 51 DQNIQKRLLLDLEARLKKLEYALTRIDSPDFGICQICDEPIPYKRLFALPEATICVDCAN 110 Query: 66 EK 67 E+ Sbjct: 111 ER 112 >UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia profundicola AmH RepID=B9L783_NAUPA Length = 117 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M SG +N++ I A +I G + CE C PI +AR + P + C Sbjct: 50 MDSGRDYQIYINQKKELE---EINDALKKIDEG-TFGICEMCEDPIQEARLKIKPYAKYC 105 Query: 61 IHCQQEKDLQKP 72 I C++ + + Sbjct: 106 IICREIIEKEGK 117 >UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter RepID=C6E710_GEOSM Length = 130 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 ++ I A+ A+ + +G + +CE CG I R +P C+ Sbjct: 56 DMLSDAGLAIADIRRNQLTALEEAQRRVEQG-TYGKCENCGEVIDIQRLRLMPFAAYCVS 114 Query: 63 CQQEKDLQKPA 73 CQ+EK+ Sbjct: 115 CQKEKEGPGKP 125 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 1 MASGWAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59 M + D + + + +ARA+ + ES EC ECG PIP+ARR+ + G + Sbjct: 1 MPDVIDHACDIEAQLTEVALANQLARAKPK-ASRESAQECGECGDPIPEARRQHMTGCQY 59 Query: 60 CIHCQQEKDLQKP 72 C HCQ + + K Sbjct: 60 CTHCQSDLEKMKR 72 >UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus RepID=A8FE57_BACP2 Length = 135 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D V++Q+ + I+ A+ R + CE+ G IP R +A+P R I ++ ++ Sbjct: 33 DQVDDQLEAEIDAALKRM-----EDGTYGICEKTGKEIPYERLKAVPYTRYSIDAKKNEE 87 Query: 69 LQKPAYTGYNRRGSKDSQLR 88 + + Q+R Sbjct: 88 TTQDP---NEFDRNFSDQMR 104 >UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UEL7_RHOBA Length = 121 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 5 WANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 + + + IE+A+ R R + +CE+CG IP R + +P R C+ CQ Sbjct: 56 TSRMAESESRELADIEEALERLRD-----GTFGDCEDCGKSIPMNRLQVVPHARRCVRCQ 110 Query: 65 QEKD 68 + + Sbjct: 111 KASE 114 >UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO Length = 103 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D + A + + CE CG IP AR E +P R C+ CQQ Sbjct: 42 DPDTLRRLIETARQGVADTAQALKRMSEGTYGVCERCGQDIPTARLEILPSARFCVPCQQ 101 Query: 66 EK 67 + Sbjct: 102 RR 103 >UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2 Tax=Cystobacterineae RepID=Q1D0G7_MYXXD Length = 130 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M + +N + + + + + A+ + R + ECEECG IP R A+P C Sbjct: 51 MQAIASNRNRNMDGVLARVLKALGKLRDDPDA---FGECEECGDEIPLGRLRAMPYAEFC 107 Query: 61 IHCQQEKD 68 + CQ KD Sbjct: 108 VTCQGNKD 115 >UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12 Tax=Desulfovibrio RepID=A1VE28_DESVV Length = 78 Score = 58.4 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAI 54 MA + D ++ E AI+ AR + G + C ECG IP+AR +A+ Sbjct: 6 MADIF---DQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKAL 62 Query: 55 PGVRLCIHCQQEKD 68 PG LC C +E + Sbjct: 63 PGCGLCRECAEEME 76 >UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria RepID=Q1MS84_LAWIP Length = 133 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 2 ASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREA 53 A A +++ + I A I G + CE+CG I R +A Sbjct: 52 ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDG-TYGVCEDCGDDIGTPRLKA 110 Query: 54 IPGVRLCIHCQQEKD 68 P +LCI+C+ ++ Sbjct: 111 RPVTKLCINCKSRQE 125 >UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS Length = 157 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +E+A+ R + + C+ CG IP+AR A+P C++C++E ++ Sbjct: 83 LEEALKRIKN-----GTFGVCKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130 >UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD Length = 118 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + I +A I +G + ECE C PI R A P LCI C+ E++ ++ Sbjct: 61 ERKLIMKIRQALERIEQG-TFGECECCEEPIGAERLRARPVTTLCIDCKTEQERKEK 116 >UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U5V5_9DELT Length = 111 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + A + E C +C PIP AR +A+P + C+ C + Sbjct: 56 EAQLSKTRVRLARLGEALRRVDDDEDFGLCIDCSKPIPMARLKAMPETQYCVDCAE 111 >UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZJ9_DESAD Length = 115 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + A + + ECEECG IP AR +P R C++C + + Sbjct: 63 RQRILNLEDALNRLEKDSFFGECEECGEDIPLARLLTLPESRYCVYCAEHLE 114 >UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ Length = 213 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 + +A D + + I++AIA + C +CG IP R A P C+ Sbjct: 57 SKDFALIDNL-KLKLRQIDEAIA-----LINQGKYGLCIDCGQKIPVDRLFANPVAIRCV 110 Query: 62 HCQQEKDLQ 70 CQ+ + + Sbjct: 111 ACQKRVEER 119 >UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO Length = 76 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 4 GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 D NE + AI + + + ++ C +C IP+ R++ G CI C Sbjct: 1 MTDQVDRANEYTEIMQQLAIQKHQQKTREKSTVKYCLDCQEEIPEIRQKN--GYCRCIDC 58 Query: 64 QQEKDLQKPAYT 75 Q+ + + Y Sbjct: 59 QRIIEKHQRIYR 70 >UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2T0_9BACT Length = 187 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + + I A +I G + CE G PIP R +A+P R Q E + + Sbjct: 93 DQDLLVEINHALSKIEEG-TYGVCELTGQPIPAERLKAVPWARFTREAQAEFEARG 147 >UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=B5EG80_GEOBB Length = 118 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 + I A I + CE C I +AR +A P LCI C+ E++ ++ Sbjct: 61 ERKLIVKIQEALARI-EAGTFGICEVCEEDISEARLKARPVTTLCIDCKMEQEKKER 116 >UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria RepID=DKSA_HAEIN Length = 145 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I ++ + C+ CG I R EA P LCI C+ ++++ Sbjct: 82 NRDRERKLMKKIEATLKKLDT-DDFGYCDCCGEEIGIRRLEARPTADLCIDCKTLAEIRE 140 Query: 72 PAYTG 76 G Sbjct: 141 KQVAG 145 >UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEFD73 Length = 111 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 A + + + I A + G + C+ CG IP R E +P R C+ Sbjct: 46 AREADDLLMMQKYAVRQALTDIDAAFTRLDEG-TYGTCQGCGRDIPVERLEILPYARCCV 104 Query: 62 HCQQ 65 CQQ Sbjct: 105 PCQQ 108 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 D E A++ R S + CEECG IP+ RR A+PG + C CQ Sbjct: 2 DIIDTAAEIEELQRNAALSAHRIN-RNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQS 60 Query: 66 EKDLQKPA 73 +L+ Sbjct: 61 VIELKNKQ 68 >UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B6BSH6_9RICK Length = 180 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 ++ S I+ A+AR R +I C + PI R A P + I Q++ + + Sbjct: 120 QIKLISEIDKALARIREDI-----YGYCLDTAEPIGLKRLMARPVAKYTIAAQEKHEKDE 174 Query: 72 PAYT 75 + Sbjct: 175 KVHA 178 >UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio vulgaris RepID=Q72G22_DESVH Length = 176 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + A + CE CG IP AR +A P RLC+ CQQE + Sbjct: 107 HRAEHRIGLLENALRRL-EAYDYGVCEGCGEDIPVARLKASPATRLCVFCQQESE 160 >UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XG00_9HELI Length = 122 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 DD++ E+ +++ I+ + + G CE C I R +A P R CI+C++ Sbjct: 55 DDSMLERNQKEMKE-ISASLAKFDDGI-YGICEMCEDEIGIERLQAKPHARFCINCREIY 112 Query: 68 DLQKPAYTG 76 + + Sbjct: 113 EKSEKQKER 121 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D++V Q + + RA + S C CG IP+ RR+A+ GV+LCI CQ Sbjct: 5 DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQTLS 64 Query: 68 DLQK 71 + ++ Sbjct: 65 ERKQ 68 >UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subtilis group RepID=G16O_BACSU Length = 163 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D ++I+ + + + RA ++ G + CE+ G IP R EA+P R+ + Q + + Sbjct: 60 DQTVKEIDRELLEEVNRALQKMKDG-TYGVCEKTGQEIPYERLEAVPYARMTVEAQADVE 118 >UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus RepID=C6D536_PAESJ Length = 234 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + I++A + G + +C CG PIP R EA+P C+ ++ Sbjct: 64 DLALLENEDLHLTRISQALEAMDNG-TYGQCRACGKPIPDERLEALPDSLYCVEHAPRQE 122 Query: 69 LQKPA 73 Sbjct: 123 TSHRQ 127 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPR-GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 ND+ + I R ++ S + CE CGA IP AR+ A+PGV LC CQ Sbjct: 6 NDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQD 65 Query: 66 EKDLQKPAYTGYNR 79 K+ Q R Sbjct: 66 VKEKQDVHRAAGCR 79 >UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X580_DESRD Length = 115 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + +A ++ GE CEECG I R A P RLCI CQ++ + Sbjct: 66 HEVEQALHQLANGE-YGLCEECGEEIGVPRLVACPSARLCIECQEQLERAA 115 >UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=B8J371_DESDA Length = 120 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + I A I G + CE+CG I R +A P RLCI+C+ +++ + Sbjct: 61 ERRLIRKIQAALTRIDDG-TYGICEDCGDDISIPRLKARPVTRLCINCKAKQEEDE 115 >UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia RepID=B2UIX3_RALPJ Length = 120 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 12/78 (15%) Query: 5 WANDDAVNEQINSTIED-----------AIARARGEIPRGESLDECEECGAPIPQARREA 53 + N D +E++ D + AR + + S C +CG IP R +A Sbjct: 43 FENADLADEEVGEQTNDVMLVRYRSELEQLNAARERMQQ-HSYGICVDCGEAIPFLRLQA 101 Query: 54 IPGVRLCIHCQQEKDLQK 71 P C+ CQ + + Sbjct: 102 QPTAMRCLPCQTACERRW 119 >UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGP9_BDEBA Length = 126 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70 + + T AI RA G+I G + +CE C I R + P LCI C +E++ Q Sbjct: 66 ERDRTALYAIERALGKIADG-TYGQCESCSEIINARRLQVRPFTALCIDCMEEQESQ 121 >UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 Tax=Hydrogenothermaceae RepID=B2V854_SULSY Length = 147 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + I AI I G + CE CG I + R EA+P LCI +E++ Sbjct: 62 DVEIEILKAIDDTLERIQNG-TYGICEVCGKEIEEERLEAVPWTTLCIQHAKEQE 115 >UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VTU7_9FLAO Length = 127 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 + RA +I G + C+ C IP+AR E +PG C+ C Sbjct: 80 LLRAMDKIEEG-TYGLCDVCKKEIPRARLEIVPGALSCVVC 119 >UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57 Length = 151 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 N + I + ++ E CE CG I R EA P LCI C+ ++++ Sbjct: 88 NRDRERKLIKKIEKTLKKV-EDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146 Query: 72 PAYTG 76 G Sbjct: 147 KQMAG 151 >UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ID32_BORPD Length = 94 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 9 DAVNEQINSTIEDAIARARGEIPR---GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + A+ R + + G + C +CG I AR +PG C+ CQ Sbjct: 23 ELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDCQT 82 Query: 66 EKDLQKPAYTGY 77 + Q+ + Y Sbjct: 83 AHEKQQTRHARY 94 >UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12E87_POLSJ Length = 134 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 8 DDAVNEQINSTIEDAIARARGEIP----RGESLDECEECGAPIPQARREAIPGVRLCIHC 63 DA + +E +A R + C +CG I R A+P C C Sbjct: 61 ADAKVDHAAHELEQVLAALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTAC 120 Query: 64 QQEKDLQKPA 73 Q + ++ Sbjct: 121 QAIHEHERQP 130 >UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AYE RepID=B0V602_ACIBY Length = 72 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 AS D E ++ + + SL ECEECG IP R+ V LC+ Sbjct: 5 ASMTDKIDIAQELQLKQVQ-----IQPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCV 58 Query: 62 HCQQEKDLQKPAY 74 C+ ++ Y Sbjct: 59 ECKNTQEKLSKRY 71 >UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZG84_BREBN Length = 257 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 2 ASGWAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 + + + D + ++ I +A + G + C CG IP R EA+P + C Sbjct: 57 SEMFEREKDLALDSLDRETLKEIDQALQRMEEG-TYGLCTVCGEQIPVERLEALPQSQTC 115 Query: 61 IH 62 Sbjct: 116 KE 117 >UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C001_9PLAN Length = 141 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 +I I RA I G CE C IP AR +A+P C+ C ++++ Sbjct: 51 EIEYKELMQIRRAISLIQEG-RYGHCESCNKNIPIARLKAVPYAMFCVSCAEQRE 104 >UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT8_THET1 Length = 126 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + ++ ++ + I A + G + C +CG IP R A P C+ Q++ D Sbjct: 64 EIALQRNLRSVLNEIEAALKRMDEG-TYGICIDCGQEIPIERLMARPYAVRCVADQEKYD 122 Query: 69 LQKP 72 Sbjct: 123 RVHR 126 >UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax=Streptomyces RepID=Q9ZBS4_STRCO Length = 108 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59 A ++Q+ S + AI R EI + C CG P+P R E +P R Sbjct: 39 AESGQADDQLMSAQKAAIERVLKEIDEAFARVEEGTYGACLGCGKPVPGERLEILPYTRY 98 Query: 60 CIHCQQEK 67 C+ CQ+ Sbjct: 99 CVACQRRA 106 >UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12HC6_POLSJ Length = 130 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + V+ Q + AI +A+ + G S C +CG PIP R +A P CI CQ + Sbjct: 61 EHVDLQRDQEELRAIQQAQERMADG-SYGGCIDCGQPIPFERLKAQPSASRCIACQTRFE 119 Query: 69 L 69 Sbjct: 120 Q 120 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 D E + A+ +A+ P+ S C++CG IP+ARR A G + CI CQ+ Sbjct: 6 DQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERI 65 Query: 68 DLQKPAYT 75 + K Y Sbjct: 66 EHAKAQYA 73 >UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria RepID=A4SHJ5_AERS4 Length = 128 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 9/81 (11%) Query: 1 MASGWANDDAVNEQINSTIE--------DAIARARGEIPRGESLDECEECGAPIPQARRE 52 MA + + A I G+ CE CG I R + Sbjct: 43 MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGD-FGYCESCGDEISLKRLQ 101 Query: 53 AIPGVRLCIHCQQEKDLQKPA 73 A P R C+ CQ K+ Sbjct: 102 ARPESRFCVECQSTKEFNDTH 122 >UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacter RepID=Q7VGT4_HELHP Length = 118 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 I A +I G + CE C I R + P + CI+C++ + + Sbjct: 67 IRNALQKIKDG-TFGVCEMCDDEIDVERLKVKPHAKYCINCRELFEQTQKKER 118 >UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SLK5_METPP Length = 122 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 ++ + A+ R S CE CG PI R A+P R C+ CQ++ D Sbjct: 66 QRELDEVSAALQRL-----NTGSYGHCERCGEPIGLPRLRALPEARHCLDCQEQADR 117 >UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2 Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU Length = 131 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 +E A+ R +C +CG I R P + C+ CQ+ + Sbjct: 69 QVNEMREVEAALKRLADL-----DYGDCIDCGGEIGFDRLMVYPTAQRCVRCQEVHEKTY 123 Query: 72 PAYT 75 Sbjct: 124 MHEN 127 >UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65 Tax=Betaproteobacteria RepID=Q12EM6_POLSJ Length = 450 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 1 MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52 + E + I ++ I G+ C+E G PI R Sbjct: 368 VPDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGD-YGYCDETGEPIGVGRLI 426 Query: 53 AIPGVRLCIHCQQEKDLQKPAYT 75 A P L + QQ ++L++ + Sbjct: 427 ARPTANLSLEAQQRRELKQKMFG 449 >UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT Length = 123 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 N D + + I +A I GE EC+ CG PI R EA P LCI C+ Sbjct: 55 NFDLKIKDRERRLIKKIDQAIERIQNGE-FGECDACGGPISVKRLEARPVTTLCIECKTA 113 Query: 67 KDLQKP 72 ++ ++ Sbjct: 114 QEQEER 119 >UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia multivorans RepID=A9AKZ2_BURM1 Length = 256 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 A + + D + AI RA+ + G S +C +C P+ AR A P C Sbjct: 180 ADLFVDVDHALIGMKLAELRAIRRAQQRMVDG-SYGDCIDCDGPVGYARLRARPTAERCT 238 Query: 62 HCQQEKDLQ 70 HCQ + + Sbjct: 239 HCQALYERR 247 >UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L9K5_9DELT Length = 120 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 I A I G + EC ECG I AR +A P LCI C+ ++ + Sbjct: 66 KKIKEALDRIDEG-TYGECVECGEDISVARMKARPVTTLCIKCKSRQEADE 115 >UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL Length = 245 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 +E + +EDA+ R S C CG PI R AIP C Sbjct: 73 HELHLARVEDALERI-----EDGSYGYCATCGKPISYERLRAIPETAYCKD 118 >UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBT1_ERYLH Length = 104 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 8 DDAVNEQINSTIEDAIARARGEIP--RGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 DD E ++ + I + R + S C +CG PIP+ R EA P CI C Sbjct: 46 DDEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKCA 104 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + + AI AR + G +EC ECG PIP ARR +P C CQ + Sbjct: 8 ELAQQIEQMQRDVAIELARAQC-HGAGAEECVECGEPIPAARRACVPYATRCTECQGRFE 66 Query: 69 LQKPAYTG 76 ++ Y Sbjct: 67 QRRTGYPR 74 >UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5P4_PELCD Length = 127 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + I++A+ R R S CE CG I AR E +P R C+ C+QE + + Sbjct: 64 EEILEIDEALERLRD-----GSYGRCEACGKTIDIARLEILPFTRRCLTCRQEAEKEAKT 118 Query: 74 YTG 76 G Sbjct: 119 KAG 121 >UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae RepID=B4U7Z4_HYDS0 Length = 118 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + I I G + CE CGA IP R +A P +CI C++ ++ Sbjct: 62 ETKLLKKIEYTLARIENG-TYGYCEVCGAEIPYERLKARPVTSMCIRCKELEE 113 >UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG44_9RHIZ Length = 76 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M G + + + + IA AR + + +L +C CG I RR A+P R C Sbjct: 1 MKIGNFAHELADMRAEQERDAGIAAARAPLKQTGTL-DCIRCGDEIEAERRAALPSARRC 59 Query: 61 IHCQQEKDLQK 71 + CQ+ + + Sbjct: 60 VDCQESFERWQ 70 >UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4E4_METEA Length = 73 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESL-DECEECGAPIPQARREAIPGVRL 59 MA D + ++ +A R + ++C++CG IP RR A P R Sbjct: 1 MADDV---DMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRR 57 Query: 60 CIHCQQEKDL 69 C+ CQ + Sbjct: 58 CVRCQTLAER 67 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D N+ + + + GESL ECE+CG IP ARRE +PGVR C+ CQ+ + Sbjct: 5 DIANDYAERELAERLYS--RVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYLE 62 >UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I8K1_9CLOT Length = 204 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63 E + D I A I G S +C++CG I + R + +P CI C Sbjct: 63 GRALEANERALLDKIDDAVRAIDEG-SYGKCQKCGKEIDKERLDFLPYALNCIEC 116 >UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U65_SOLUE Length = 129 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRG-------ESLDECEECGAPIPQARREAI 54 E+ + +G S C C I R +A+ Sbjct: 36 PDAIDEVQLAGERELAIRNLDRESNLLRNVKGALVRVADGSYGVCMHCEEDIKPKRLDAV 95 Query: 55 PGVRLCIHCQQEKDLQK 71 P + CI CQ+ D + Sbjct: 96 PWTKYCIKCQEAADRHE 112 >UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A882_GEMAT Length = 127 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 22 AIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + +A + + + +C +CG I R +A+P R CI C+Q ++ K + Sbjct: 75 HLDQALRRLYKAPATFGKCHQCGEDIAFERLDALPNARYCIACKQREEDAKKS 127 >UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=A0RK79_BACAH Length = 243 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 1 MASGW---ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGV 57 MA+ D + E + +ED + + + CE G IP R EA+P Sbjct: 53 MATELYEREKDFGLIELWHKQLED--TKHALQKIEAGTYGICEVSGEEIPFERLEAMPTA 110 Query: 58 RLCIHCQQEK 67 CI K Sbjct: 111 TTCIQHATNK 120 >UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 Tax=Opitutaceae RepID=B1ZV03_OPITP Length = 297 Score = 55.3 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 10/73 (13%) Query: 2 ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + D A+ ++ + I+ AI R + CE PI + R A+P Sbjct: 200 TDTFDRDFALSLVSSEQEALTEIDAAIKRI-----HDGTYGICEITQKPIAKERLLAVPF 254 Query: 57 VRLCIHCQQEKDL 69 R Q++ + Sbjct: 255 TRYSAEAQKDLEK 267 >UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP Length = 212 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 9 DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 D + A+ A + RG + C+ECG I R EA+P C C+ + Sbjct: 67 DFALRENARFRLLAVEDALARMDRG-TYGRCDECGVDIDLERLEAVPFTTKCRECKARAE 125 Query: 69 LQKPAYT 75 + Sbjct: 126 GKDERAR 132 >UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7 Length = 69 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59 MA + + E A+ + + P G SL C+ECG IP+ARR A+ G+ Sbjct: 1 MADCFDR---AQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIR 56 Query: 60 CIHCQQEKDLQKP 72 C CQ + Sbjct: 57 CTPCQARFEKGGR 69 >UniRef50_B9XD69 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium Ellin514 RepID=B9XD69_9BACT Length = 184 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 10/73 (13%) Query: 2 ASGWANDDA-----VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56 + D A ++ IE AI R + CE G PI R AIP Sbjct: 82 TDTYDRDFALSMLSADQSAVYEIEQAIQRI-----ESNTYGICEMTGKPIQSERLNAIPW 136 Query: 57 VRLCIHCQQEKDL 69 R + ++E + Sbjct: 137 TRFSVEAERELER 149 >UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021L0_SOLUE Length = 129 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 ++ + + DA+ R S C+ C I R +P C+ CQ+ Sbjct: 53 RQLELDHKRMRGLRDALERI-----EDGSYGICQRCDEDISLKRLRVVPWASYCLRCQES 107 Query: 67 KDL 69 D Sbjct: 108 ADH 110 >UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551 RepID=A3RXC3_RALSO Length = 224 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 1 MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52 + E + + ++ I G + C+E G PI R Sbjct: 142 VPDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEG-NYGYCDETGEPIGVPRLL 200 Query: 53 AIPGVRLCIHCQQEKDLQKPAYT 75 A P L + Q+ ++ ++ + Sbjct: 201 ARPTATLTLEAQERREKRQKLFG 223 >UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13 Tax=Clostridium RepID=C6Q1P6_9CLOT Length = 201 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 17/84 (20%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK-------- 67 +I I + I +G + +C CG I + R E IP C+ CQ+ Sbjct: 70 ELSIIKKIENSLSNIDKG-TYGKCSICGKDIKEERLEFIPYTDHCVECQKSLSNSYSDEK 128 Query: 68 -----DLQKPAYT---GYNRRGSK 83 + Q+P Y GYN R + Sbjct: 129 RNTPIEKQEPGYPFGYGYNDRRDE 152 >UniRef50_C5RLG0 Transcriptional regulator, TraR/DksA family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLG0_CLOCL Length = 199 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + + I A + G+ C C I + R + +P + C CQ Sbjct: 71 ETNMLGKINEALDALENGD-YGLCGNCQKEITKERLDFLPYAKYCAKCQGIM--HTLRER 127 Query: 76 GYNRRGSKDSQLR 88 + R +++ L+ Sbjct: 128 TFEDRPNEEYVLK 140 >UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1 RepID=B0ZSI9_9CAUD Length = 75 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%) Query: 1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60 M+ ++ AR + + C ECG I RR+A+P C Sbjct: 1 MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60 Query: 61 IHCQQEKDLQKPAYT 75 CQ+ D Y Sbjct: 61 FGCQEFVDRTAKGYR 75 >UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM Length = 119 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + RA E E C++CG IP AR A+P C+HC ++ + Sbjct: 58 ETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCVHCMSAREERGAQAR 115 >UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS Length = 138 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 1/61 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 AI A I ++ C++ G PI R P Q + Sbjct: 76 ERAEAMAIKAALVRIEE-DAYGWCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKHVR 134 Query: 76 G 76 Sbjct: 135 A 135 >UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus RepID=Q473A0_RALEJ Length = 124 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 4 GWANDDAVNEQINSTIED-----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVR 58 A ++ V Q ++ +E A RA E + C +CG IP +R +A P R Sbjct: 47 DLAEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGTCTDCGEAIPYSRLQAYPTAR 106 Query: 59 LCIHCQQEKDL 69 C CQ+ + Sbjct: 107 RCADCQRGHER 117 >UniRef50_Q30RD2 Transcriptional regulators, TraR/DksA family n=3 Tax=Epsilonproteobacteria RepID=Q30RD2_SULDN Length = 116 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 EQ I + + CE C PI R + P CI C++ + + Sbjct: 62 QEQELREINVTLGKI-----ATGDYGICEMCEDPIGFQRLKVKPHAIYCIDCREIVEKSR 116 >UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q9W6_SULNB Length = 118 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 2 ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61 ++ A D A+ EQ + + I A +I G + CE C PI +AR E R CI Sbjct: 50 SAETAVDSAILEQQRKELAE-IDLALDKIKNG-TYGICEMCEEPIGKARLEVKNFARFCI 107 Query: 62 HCQQEKDLQK 71 C++ + ++ Sbjct: 108 TCREINEKEQ 117 >UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTL7_DESBD Length = 133 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 19/48 (39%) Query: 29 EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76 + +S CE CG I R AIP CI CQ+ D + Sbjct: 75 KAIDNDSYGICEMCGEHIADRRLLAIPSALFCIECQEMIDRLPGEFGR 122 >UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD Length = 130 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + RA +I G + C++ G PIP+ R EA+P + QQ D + Sbjct: 73 RRRLEDVERALQKIEEG-TYGVCDDTGEPIPKGRLEAMPEAIRTVEAQQRHDRVRRP 128 >UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68 Tax=Alphaproteobacteria RepID=A7HW84_PARL1 Length = 146 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 16 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I A I G + CEE G PI R +A P L I Q+ + ++ Y Sbjct: 86 QRKLVSKIDAAIRRIDEG-TYGYCEETGEPISLKRLDARPIATLSIEAQERHERREKVYR 144 >UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbachia RepID=C0R4V6_WOLWR Length = 130 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 5 WANDDAVNEQINSTIEDAIARARGEIPRG--ESLDECEECGAPIPQARREAIPGVRLCIH 62 ++++D+ NE++ +D + + + + + C+ G I R +A P CI Sbjct: 55 YSDEDSGNEELIKRRKDRKEKIKEALEKIKLGTYGYCDGTGEEIGVERLKANPLAIYCIE 114 Query: 63 CQQEKDLQKPAYT 75 Q+ + +K Y Sbjct: 115 EQERVEKEKNVYN 127 >UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 Tax=Anaeromyxobacter RepID=B4UII3_ANASK Length = 144 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 A + I+ AIAR C +C I R A+P LC C Q Sbjct: 74 ARLGENQRRELVQIDAAIARI-----DAGEYGICRDCEQDIDPRRLAALPYAVLCTECAQ 128 Query: 66 EKDLQK 71 ++ + Sbjct: 129 RRERAQ 134 >UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 Tax=Gammaproteobacteria RepID=B8GMT5_THISH Length = 132 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 + + +E A+ R G+S C +CG I R +A P + C CQ + + Sbjct: 70 HVEEVRDVEAALLRI-----AGQSYGICTDCGDAIAYERLDAYPTAKRCARCQAQHEK 122 >UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID=B0SIE7_LEPBA Length = 154 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + IE A+ + + CE IP AR +AIP R + ++ + Sbjct: 77 ETLREIELALEKI-----ENGTYGICEGTKKKIPLARLKAIPWTRFTVEFAEQMAKSRNR 131 Query: 74 YTGYNRRG 81 GY Sbjct: 132 AGGYRMDS 139 >UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8Q8_KANKD Length = 120 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 + + + A+ +A I G+ C EC PI R E P LC+ CQ K+ Sbjct: 58 EASVERDKKRLVAVRKALKRIEEGQ-YGFCLECDEPISAKRLEVAPETELCLDCQSFKEE 116 Query: 70 QKP 72 Sbjct: 117 HDR 119 >UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6HWS3_9BACT Length = 121 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73 + + I A I G S CE CG I + R A P CI C+ + + A Sbjct: 58 EREKKLLRKIDEALERIEEG-SFGICERCGEAIEEKRMLARPVTTYCIACKTILEEAERA 116 Query: 74 Y 74 Sbjct: 117 E 117 >UniRef50_UPI0001C4239D hypothetical protein BpOF4_09730 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4239D Length = 215 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 16/89 (17%) Query: 9 DAVNEQINSTIEDAIARA----------RGEIPRGESLDECEECGAPIPQARREAIPGVR 58 D E + +E A+ + + CE CG PIP R EA+P R Sbjct: 53 DLATELHDRELEAALDQHSKDELEEINQALAAIEDGTYGICEVCGEPIPFERLEALPTAR 112 Query: 59 LCIHCQQEKDLQKPAYTGYNRRGSKDSQL 87 + RR ++ + Sbjct: 113 R------RIEHADVNIEDETRRPVEEEVM 135 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74 P+G+S C +CG IP RRE +PGV+ CI CQ+E++ Y Sbjct: 8 PKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 25/59 (42%) Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 +I AR IP ECE+CG PIP+ARR A P C CQ + Sbjct: 9 EIEEMNRAQALAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQARHERHAK 67 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 27 RGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72 R S C+ CG IP+ARR A+PGV LC+ CQ+ ++ Sbjct: 27 RNVHNGRISNTCCDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72 >UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJK4_DESAH Length = 114 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 8 DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 + + + RA I C C PIP AR +P LC+ C Sbjct: 54 MNEAALKRARITLSKLERALARIGS-PDFGLCSACEEPIPFARLMILPETELCVKCA 109 >UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 Tax=Anaeromyxobacter RepID=A7HEW6_ANADF Length = 130 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 16 NSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 + + I RA ++ CE+C I R +P C CQ + + Sbjct: 63 QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTE 116 >UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YVQ5_STRSW Length = 132 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 9 DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62 EQ+ D I R EI + + C C PIP R E +P R C+ Sbjct: 67 QEAGEQLMPGQRDTIERVLKEIDAAFVRVQEHTYGTCLGCSKPIPVERLEILPYTRFCVP 126 Query: 63 CQQ 65 C++ Sbjct: 127 CRR 129 >UniRef50_D1ACI4 Transcriptional regulator, TraR/DksA family n=2 Tax=Streptosporangineae RepID=D1ACI4_THECD Length = 121 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 3 SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62 S DA E++ +A A I G + C CG PI R EA P C+ Sbjct: 54 SDAEQADAALERLRRQRNSVLA-ALQRIAAG-TYGRCVTCGKPIAAGRLEARPDAARCLT 111 Query: 63 CQQEKDLQKP 72 CQ D + Sbjct: 112 CQARYDRARR 121 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%) Query: 1 MASGWANDDAVNEQINSTIEDAIA--RARGEIPRGESLDECEECGAPIPQARREAIPGVR 58 M+ D + I++ A RA I S C +CG IP +RRE+IPGV Sbjct: 1 MSIDVD-DSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVS 59 Query: 59 LCIHCQQEKDLQKPAY 74 LC++CQ+ ++ Sbjct: 60 LCMYCQEWRESGDKKQ 75 >UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK Length = 72 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 7 NDDAVNEQINSTIEDAI-ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 +D E E I + + G C++CG I + RR AI GV+ CI CQ+ Sbjct: 3 PEDWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEIEKERR-AIKGVKRCIFCQE 61 Query: 66 EKDL 69 + Sbjct: 62 RYER 65 >UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J2D3_DESDA Length = 130 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%) Query: 38 ECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGS 82 +C +CG IP R A PG C CQQ+++ +RG+ Sbjct: 77 QCVDCGEDIPLKRLVAAPGTVRCFSCQQQEERAAAPLAATVQRGT 121 >UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum RepID=A4TVR6_9PROT Length = 76 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%) Query: 6 ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65 + D E+I++ A+ S C CG I R A P R C C Sbjct: 2 DDIDCAAERIDAFNAVALQAVLARTSGAPSSGICRACGCDIEPERLRATPHARHCKECAA 61 Query: 66 EKDLQKPAYTGYNRR 80 E + + + R Sbjct: 62 EIEAENRRHNRCGPR 76 >UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3 Tax=Proteobacteria RepID=Q0AHN9_NITEC Length = 135 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 23 IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69 I A I G+ C +CG P+ R +A P + C CQ ++ Sbjct: 80 IVAAEDRIATGK-YGLCIDCGEPVRYKRLDAYPTAKRCFTCQVRRER 125 >UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRY0_ALKMQ Length = 224 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64 E I RA +I G + EC+ CG IP R E +P +C+ C Sbjct: 68 ENHERYRVTEIDRALEKIQEG-TYGECQLCGQGIPDERLEVMPEANICMVCA 118 >UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9 Tax=Campylobacterales RepID=A0RMM0_CAMFF Length = 122 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 12 NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71 + I++++ + + C+ C I R + P + CI C++ + Sbjct: 62 QRSELNEIDESLKKIANR-----TYGICDMCEDEIDIERLKVKPNAKYCITCREIIEKNN 116 Query: 72 P 72 Sbjct: 117 K 117 >UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0K2_DESAD Length = 116 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 17/33 (51%) Query: 36 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 CE+CG I AR +A P R C+ CQ + Sbjct: 76 FGICEDCGEEIALARIKANPTTRFCVSCQSRME 108 >UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7R7_9RHOB Length = 118 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 N++ + I A I E C ECG IP+AR P C+ C + Sbjct: 61 QANDRQRARELQRIDGALQRIKEEE-YGFCLECGEDIPEARLRVDPAALYCVSCAKLF 117 >UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=B4SQA3_STRM5 Length = 405 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 1/59 (1%) Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75 + I + G+ C + G I R EA I Q+ + + Sbjct: 347 RKLIGKIDSTLKRLEAGD-YGYCVDTGEEIGLERLEARLTAERTIDAQERWEHLQKQQG 404 >UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWV8_DESAC Length = 139 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 7 NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66 ++ S + I A I G S C E G I R A P L + Q+ Sbjct: 68 RMTLISHDRKSRLLAQINAALLRIKEG-SYGYCVETGEEIGLRRLLAYPAAFLLVEVQEA 126 Query: 67 KDLQKPAYT 75 ++ + ++ Sbjct: 127 REHRSRSFA 135 >UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSA0_ACIC1 Length = 113 Score = 52.2 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 V ++ + +A+ R + C CGAP+P+ R EA P C+ CQ + + Sbjct: 57 EVAQEQRRQVLEALQRI-----ENGTYGLCVSCGAPLPEGRLEAKPEAARCLSCQAKLE 110 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.149 0.532 Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 573,794,022 Number of Sequences: 3077464 Number of extensions: 21770276 Number of successful extensions: 59938 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 765 Number of HSP's successfully gapped in prelim test: 82 Number of HSP's that attempted gapping in prelim test: 59087 Number of HSP's gapped (non-prelim): 858 length of query: 88 length of database: 1,040,396,356 effective HSP length: 58 effective length of query: 30 effective length of database: 861,903,444 effective search space: 25857103320 effective search space used: 25857103320 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 87 (38.0 bits)