BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (88 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...   181   4e-45
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...   140   1e-32
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...    94   1e-18
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...    93   3e-18
UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=...    65   9e-10
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    52   6e-06
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    52   8e-06
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          52   8e-06
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    51   1e-05
UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI            51   1e-05
UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass...    50   2e-05
UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass...    49   4e-05
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    49   5e-05
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    49   7e-05
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    48   9e-05
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    48   9e-05
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    48   9e-05
UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ...    47   1e-04
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    47   1e-04
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    47   2e-04
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    46   3e-04
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    46   4e-04
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    45   8e-04
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    45   0.001
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    44   0.001
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    44   0.001
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    44   0.002
UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ...    44   0.002
UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop...    44   0.002
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    44   0.002
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    43   0.003
UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3...    43   0.003
UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    42   0.004
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    42   0.005
UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=...    42   0.006
UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=...    42   0.006
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.007
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  42   0.007
UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1...    41   0.011
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    41   0.012
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    41   0.013
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    41   0.013
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.016
UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=...    40   0.018
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.019
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    40   0.020
UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto...    40   0.022
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    40   0.023
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.024
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    40   0.024
UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ...    40   0.034
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   39   0.035
UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.039
UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa...    39   0.043
UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5...    39   0.044
UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.050
UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.050
UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum...    39   0.059
UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p...    39   0.060
UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1...    39   0.061
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    39   0.066
UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ...    39   0.068
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    39   0.076
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    38   0.082
UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ...    38   0.090
UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ...    38   0.091
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    38   0.092

>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC
Sbjct: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          IHCQQEKDLQKPAYTGYNRRGSKDSQLR
Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 76/88 (86%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL  CEEC A IP+ARR+AIPGVRLC
Sbjct: 1  MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ E D +  AY+GYNRRGSKDSQLR
Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 60/91 (65%), Gaps = 3/91 (3%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARAR-GEIPRG--ESLDECEECGAPIPQARREAIPGV 57
          MA GWA DDAVNEQI  + ++AI R R     RG  ES   CEEC  PIP+ARR AIPGV
Sbjct: 1  MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60

Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          RLC+ CQ  +D       G NRRGSKDSQL+
Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRL 59
          MA+G+  D  V EQI++T+ DAI RAR  +    +  + C ECG  IP+ARR  IPGV L
Sbjct: 1  MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60

Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          C+ CQ ++D ++ A++ YNRR SKDSQLR
Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89


>UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2
          Tax=Proteobacteria RepID=Q0BZ89_HYPNA
          Length = 87

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWA + +V +QI  ++ DA+A AR  +P G  L+ECEECG  IP ARR A+ G R C
Sbjct: 1  MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ  ++ Q P ++  NRRG+KDSQLR
Sbjct: 61 VSCQSVREKQ-PKFSSINRRGNKDSQLR 87


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D V +++    E  I +AR       S   CE C  PIP+ARR A+PGV LC+ CQ+ K+
Sbjct: 6  DLVQQRVEEERERHIHKARSR-QAAPSRFLCESCNGPIPEARRAALPGVELCVTCQEIKE 64

Query: 69 LQKPAYTG 76
          L+   Y G
Sbjct: 65 LKSLHYKG 72


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
          CEEC APIP+ARR AIPGV+ C+ CQ+  +L+   Y G
Sbjct: 35 CEECDAPIPEARRRAIPGVQCCVTCQEILELKSKHYNG 72


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 9  DAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D  N+     +   +AR  G+   +G SL  CEEC  PIP+ARR  +PGVRLC+ CQ
Sbjct: 5  DRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 26/33 (78%)

Query: 33 GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          GESL ECE+CG  IP ARRE +PGVR C+ CQ+
Sbjct: 27 GESLYECEDCGEEIPVARRELVPGVRKCLSCQE 59


>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 10 AVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          +V EQ+  T    I R R +I   G  +  CE CG PIP+ARR+  PGV LC+ CQ  ++
Sbjct: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66

Query: 69 LQKPAY 74
           Q+  Y
Sbjct: 67 RQRKHY 72


>UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=A8R990_9CAUD
          Length = 85

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59
          MA G+A D A   ++ + ++ AI  AR ++    ES   C +C   IP+ARR+AI GV  
Sbjct: 1  MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60

Query: 60 CIHCQQEKD 68
          CI CQ   D
Sbjct: 61 CIGCQSMHD 69


>UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=Q6U9H2_9CAUD
          Length = 84

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA G+  ++ ++  IN+ +++A+   R    +G++ + CEEC  PIP+ARR AI     C
Sbjct: 1  MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAI-STAYC 59

Query: 61 IHCQQEKD 68
          + CQ   D
Sbjct: 60 VQCQTVHD 67


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 20 EDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          E AIA AR  + RG S  ECE+CG PIP AR+ A PG   C+ CQ  ++
Sbjct: 16 EAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQNRRE 64


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D   E     +E A+A      P  ESL  CEECG PIP+ RR+A PG   C+ CQ
Sbjct: 6  DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRCVRCQ 61


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D  NE + + ++  +A AR  +   ES ++CE+CG PIPQARR A PG   CI CQ
Sbjct: 6  DHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQ 60


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
          P   S   CEEC APIP+ARR A+PGV LCI CQ+  +++     G
Sbjct: 27 PASPSRFLCEECDAPIPEARRMAVPGVALCITCQEIAEMKNKHVRG 72


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYN 78
          D I R R ++  G S   C++CGAP+P  RR  IPGVR C+ CQ+ +++Q   Y  + 
Sbjct: 18 DRIQRIRQQLT-GISALFCDDCGAPVPAERRRLIPGVRKCVGCQEVQEIQARHYRRWQ 74


>UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD
          Length = 213

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 18/87 (20%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ------ 65
           +E+  + +EDA++R R    +G +  +CE CG PIP  R EAIP  R C+ C++      
Sbjct: 68  DERALADVEDALSRIR----QG-TYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122

Query: 66  -------EKDLQKPAYTGYNRRGSKDS 85
                  E+D+  PA+  ++R G+ ++
Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          S + C ECGAPIP+ RR A+PGV LC+ CQ  K+
Sbjct: 32 SRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          P+G+S   C +CG  IP  RRE +PGV+ CI CQ+E++
Sbjct: 8  PKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERE 45


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
          + + +ARA+ +  R ES  EC ECG PIP+ARR+ + G + C HCQ   DL+K
Sbjct: 20 LANQLARAKPKASR-ESAQECGECGDPIPEARRQHMTGCQYCTHCQ--SDLEK 69


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE      E A+A+ R + P   SL  CE+C  PIP+ARR+ + G   CI CQQ  +
Sbjct: 6  DRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQIYE 64

Query: 69 LQKPAY 74
           ++  Y
Sbjct: 65 YKQKGY 70


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 22 AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          A  R +G + R      C +CG  IP +RRE+IPGV LC++CQ+
Sbjct: 27 AALRIKGHVSRRH----CRDCGDEIPDSRRESIPGVSLCMYCQE 66


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 24 ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          AR+RG      +L +C++CG PIP+ARR+A+PG   C+ CQ+
Sbjct: 23 ARSRGS---QSTLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I ++R +     SL  C  CG PIP+ RR+ +PG+  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57

Query: 61 IHCQQE 66
            CQ++
Sbjct: 58 KECQEK 63


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 20 EDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
          +D IARA G+I +G     C  CG PI +ARR+A+P    C+ CQ+ ++    ++ G
Sbjct: 17 DDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDCQESRERWSRSHRG 72


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I + R +     SL  C  CG PIP+ RR+ +PGV  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57

Query: 61 IHCQ 64
            CQ
Sbjct: 58 TECQ 61


>UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales
           RepID=C1DXT7_SULAA
          Length = 144

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 39  CEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           CEECGA I + R EAIP VRLCI C Q +++
Sbjct: 80  CEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110


>UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A3ZQT2_9PLAN
          Length = 134

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62
           D+  ++++S + +  +R   +I       RG S  ECE C   IP AR +A+P   LCI 
Sbjct: 50  DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109

Query: 63  CQQEKDLQKPAYTGYNRRGSKDSQL 87
           CQ+E  L++    G + R + + Q+
Sbjct: 110 CQRE--LEELGEDGVSWRQNSEDQV 132


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 19 IEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQ--EKDLQKPAYT 75
          +E+ IA  R E+  G  SL  CE CG  I + RR+ +PGV+LC+ CQ+  E   Q    T
Sbjct: 18 LEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLCVGCQEVAEHWEQVRCIT 77

Query: 76 GYNRRG 81
          G +R G
Sbjct: 78 GGHRGG 83


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 19 IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
          ++  IA  +    +  S   CE+C APIP+ RR+ I GV  C+ CQQ  ++Q+  +
Sbjct: 14 MQREIALKKHRTFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVTCQQRFEIQQRNF 69


>UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella
          RepID=Q0HYS5_SHESR
          Length = 68

 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
          +A+   P   S  +C ECG  IP+ RR+AI GVRLC+ CQ  ++ Q
Sbjct: 23 KAQAAKPVPPSATDCAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 42.4 bits (98), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   E+    +   IA+AR + P   S   C  C A IP+ RR  +PGV  C+ CQQ  +
Sbjct: 6  DIAQERQEMLLAMQIAKARSK-PITASAFICASCEAEIPEQRRITVPGVIFCVACQQLHE 64

Query: 69 LQKPAYTG 76
           +K  Y G
Sbjct: 65 EKKKHYRG 72


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 42.0 bits (97), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 42 CGAPIPQARREAIPGVRLCIHCQQ 65
          CG PIP+ RR+A+PGV+ C+ CQQ
Sbjct: 48 CGEPIPEQRRKALPGVKFCVECQQ 71


>UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas
          putida KT2440 RepID=Q88IG2_PSEPK
          Length = 72

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
          D +  AR   P  ESL++C  CG  IP+ RR A+ G + CI CQ   + +   Y G
Sbjct: 17 DLVLSARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQGFFEKKGARYAG 72


>UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter
          arcticus 273-4 RepID=Q4FUG7_PSYA2
          Length = 66

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 7/58 (12%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGE--SLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D  N+ ++ T+   ++RA    P+ +  SL EC ECG  IP A+R+A+ GV LC+ CQ
Sbjct: 6  DRANDYVDLTMAHCLSRA----PKFDKPSLTECMECGEDIP-AKRQAMGGVTLCVDCQ 58


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQ-EKDLQK 71
          C+ CG  IP+ARR A+PGV LC+ CQ+ E+ L K
Sbjct: 39 CDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE+  + ++ A+A+ R       S   CE+CG  IP+ARR+A PG   CI CQ+ ++
Sbjct: 5  DQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63


>UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LEV8_RALME
          Length = 123

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           G    DA+ E     +ED IA ARG +  G S   C EC  PIP  R +A P  + C  C
Sbjct: 54  GQRQADAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTAC 111

Query: 64  QQEKDLQK 71
           Q+E + ++
Sbjct: 112 QREHEQKR 119


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 40.8 bits (94), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 33 GESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
          G+S   CE CG  IP  R++AIPGVR C  CQ+  ++++  Y
Sbjct: 45 GKSRKRCECCGNRIPLRRQQAIPGVRTCTECQRVLEIRQKQY 86


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D + + + +++ +        IP   S   C++C + IP+ARR ++PGVRLC+ C   ++
Sbjct: 10 DVIEQHLTASLANRKHNINPAIP---SAKHCDDCESEIPEARRRSLPGVRLCVDCASLQE 66

Query: 69 LQ 70
          ++
Sbjct: 67 IK 68


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 11 VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          + EQ  +    A  R        ES  + E CG PIP+ RR A+ G R C+ CQ+ ++
Sbjct: 10 IEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVECQERRE 67


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 40.4 bits (93), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   E+    +E  IA AR  + +  S   C +C   IP+ RR AIPGV  C+ CQ+  +
Sbjct: 6  DMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSE 64

Query: 69 LQKPAY 74
           Q+  +
Sbjct: 65 AQQRHF 70


>UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72G22_DESVH
          Length = 176

 Score = 40.4 bits (93), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 39  CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
           CE CG  IP AR +A P  RLC+ CQQE +    A T
Sbjct: 131 CEGCGEDIPVARLKASPATRLCVFCQQESECAPVAAT 167


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 40.4 bits (93), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
           +     DA+ + +   IE+A+ R R           CE+CG PIP+ R E +P  R C+ 
Sbjct: 52  TALVQADALRQTLED-IEEALLRLRQG-----RYGLCEKCGKPIPEGRLEILPYARCCVS 105

Query: 63  CQQEK 67
           CQQ +
Sbjct: 106 CQQRR 110


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 40.0 bits (92), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D   EQ    ++ A+ + R       S   CE+C  PIP+ RR AI G   CIHCQ
Sbjct: 6  DRATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIHCQ 61


>UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B2I3M6_ACIBC
          Length = 66

 Score = 40.0 bits (92), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 9  DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D   E  +  ++  IA R R E   GES  EC ECG  IP+ RR A+ GV+ CI CQ
Sbjct: 6  DKAQESADYLLQQEIANRCRFE---GESEKECVECGEEIPE-RRRALGGVKFCIECQ 58


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 40.0 bits (92), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
          CE CGA IP AR+ A+PGV LC  CQ  K+ Q
Sbjct: 39 CECCGADIPAARQLAVPGVELCAACQDVKEKQ 70


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 40.0 bits (92), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 8  DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          D++V  Q  +  +    RA   +    S   C  CG  IP+ RR+A+ GV+LCI CQ
Sbjct: 5  DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 40.0 bits (92), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 30 IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
          IP      ECE+CG PIP+ARR A P    C  CQ
Sbjct: 25 IPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQ 59


>UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM
          Length = 203

 Score = 39.7 bits (91), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           N+ +   +E+A+ +   +I        CE CG PIP+ R +A+P    C+ C++
Sbjct: 69  NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKK 117


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 39.3 bits (90), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 13 EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          EQ+   +   +ARA+     G   +EC ECG PIP ARR  +P    C  CQ   + ++ 
Sbjct: 14 EQMQRDVAIELARAQCH---GAGAEECVECGEPIPAARRACVPYATRCTECQGRFEQRR- 69

Query: 73 AYTGYNR 79
            TGY R
Sbjct: 70 --TGYPR 74


>UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4
          Length = 242

 Score = 39.3 bits (90), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           D A+NE     + D I  A   I  G S  +CE CG  IP  R EAIP  R CI   +EK
Sbjct: 64  DIALNEHSEQLL-DEIDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQHAEEK 121

Query: 68  DL 69
            +
Sbjct: 122 SV 123


>UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2
           Tax=Cystobacterineae RepID=Q1D0G7_MYXXD
          Length = 130

 Score = 39.3 bits (90), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 34  ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           ++  ECEECG  IP  R  A+P    C+ CQ  KD
Sbjct: 81  DAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115


>UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium
           RepID=A3DD29_CLOTH
          Length = 212

 Score = 39.3 bits (90), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           I  A  ++ +G S  +CE CG  I + R EA+P  RLCI C+  K+
Sbjct: 77  INEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121


>UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZJ9_DESAD
          Length = 115

 Score = 38.9 bits (89), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +EDA+ R    + +     ECEECG  IP AR   +P  R C++C
Sbjct: 69  LEDALNR----LEKDSFFGECEECGEDIPLARLLTLPESRYCVYC 109


>UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora
           aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO
          Length = 103

 Score = 38.9 bits (89), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 39  CEECGAPIPQARREAIPGVRLCIHCQQEK 67
           CE CG  IP AR E +P  R C+ CQQ +
Sbjct: 75  CERCGQDIPTARLEILPSARFCVPCQQRR 103


>UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1
          RepID=Q2WA51_MAGSA
          Length = 74

 Score = 38.5 bits (88), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 20/42 (47%)

Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          P GES   C  CG  IP  RR A+PG   C  C Q+     P
Sbjct: 29 PTGESAYFCRSCGERIPDERRAAVPGTNHCTFCAQQITAASP 70


>UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage
          gene n=1 Tax=Aliivibrio salmonicida LFI1238
          RepID=B6EIS7_ALISL
          Length = 71

 Score = 38.5 bits (88), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 34 ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          +S +EC EC   IP+AR+EA+ G + C++CQ+  D
Sbjct: 33 KSAEECIECEKAIPKARQEAVKGCQYCVNCQELAD 67


>UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V43_DESDG
          Length = 149

 Score = 38.5 bits (88), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 39  CEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           CEECG  I +AR +A P   LCIHCQ++++
Sbjct: 105 CEECGDEIGEARLKANPTTTLCIHCQEDRE 134


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 38.5 bits (88), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE------------CEECGAPIPQA 49
           A G  +D+A     N T E  +A A G   R E  +             CE CG PI +A
Sbjct: 152 ADGAGDDEADTGTKNVTREHELALAAGSRERLEQTERALLRMDAGTYGVCENCGKPIGKA 211

Query: 50  RREAIPGVRLCIHCQQEKD 68
           R +A P   LC+ C+Q+ +
Sbjct: 212 RMQAFPHAILCVDCKQKSE 230


>UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C120_SPHTD
          Length = 130

 Score = 38.5 bits (88), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           I RA  ++ +GE    CE C  PIP  R EA+P  R CI CQ + D
Sbjct: 78  IERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMD 122


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 38.5 bits (88), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
          S + CEECG  IP+ RR A+PG + C  CQ   +L+
Sbjct: 30 SAERCEECGEDIPEPRRAAVPGCQTCSECQSVIELK 65


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 38.1 bits (87), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 39  CEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           CE CG PI +AR +A P   LC+ C+Q+++
Sbjct: 207 CENCGNPIGKARMQAFPRATLCVECKQKQE 236


>UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2J7_9PLAN
          Length = 148

 Score = 38.1 bits (87), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62
           D   ++INS + +  +R    I       R  +   CE C  PIP  R +A+P   +CI 
Sbjct: 49  DTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVMCIK 108

Query: 63  CQQE 66
           CQ+E
Sbjct: 109 CQRE 112


>UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex
          degensii KC4 RepID=C9R7U4_AMMDK
          Length = 176

 Score = 38.1 bits (87), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 18 TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           IEDA+ R    +  G +   CE CGAPIP+ R EA+P   LC  C++ ++
Sbjct: 52 VIEDALRR----LEEG-TYGYCESCGAPIPRERLEAVPYTTLCHACKERQE 97


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 38.1 bits (87), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
          +A+   P+  S   C++CG  IP+ARR A  G + CI CQ+  +  K  Y 
Sbjct: 23 QAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERIEHAKAQYA 73


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...   126   2e-28
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...   120   2e-26
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...   109   4e-23
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...   100   2e-20
UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass...    87   2e-16
UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=...    81   1e-14
UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop...    77   2e-13
UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI            76   3e-13
UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass...    76   3e-13
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    76   3e-13
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    76   4e-13
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    75   5e-13
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    73   2e-12
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    72   5e-12
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    71   8e-12
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          70   2e-11
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    69   3e-11
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    69   5e-11
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    67   2e-10
UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ...    66   5e-10
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    65   9e-10
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    64   2e-09
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    61   1e-08
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    61   2e-08
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    59   5e-08
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    58   9e-08
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    57   2e-07
UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ...    56   4e-07
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    56   4e-07

Sequences not found previously or not previously below threshold:

UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    67   2e-10
UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B...    66   4e-10
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    64   1e-09
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    62   6e-09
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    61   2e-08
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    61   2e-08
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    59   6e-08
UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD      58   1e-07
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  58   1e-07
UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ...    57   1e-07
UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=...    56   3e-07
UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5...    56   4e-07
UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri...    55   9e-07
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    54   2e-06
UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob...    54   2e-06
UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba...    54   2e-06
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=...    53   3e-06
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi...    53   3e-06
UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ...    52   5e-06
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    52   5e-06
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    52   6e-06
UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=...    52   6e-06
UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ...    52   7e-06
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    52   7e-06
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    52   7e-06
UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1...    52   8e-06
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    52   8e-06
UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12...    51   9e-06
UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ...    51   1e-05
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    51   1e-05
UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr...    51   1e-05
UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ...    51   2e-05
UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ...    51   2e-05
UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa...    51   2e-05
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   50   2e-05
UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1...    50   2e-05
UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ...    50   2e-05
UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot...    50   2e-05
UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ...    50   2e-05
UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ...    50   2e-05
UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel...    50   2e-05
UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID...    50   2e-05
UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ...    50   2e-05
UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu...    50   2e-05
UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom...    50   3e-05
UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3...    50   3e-05
UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim...    50   3e-05
UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact...    50   3e-05
UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac...    50   3e-05
UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT...    50   3e-05
UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm...    50   3e-05
UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n...    49   3e-05
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    49   3e-05
UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ...    49   4e-05
UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=...    49   4e-05
UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ...    49   4e-05
UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi...    49   5e-05
UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo...    49   6e-05
UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a...    49   6e-05
UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete...    49   7e-05
UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot...    49   7e-05
UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ...    49   7e-05
UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ...    48   8e-05
UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1...    48   8e-05
UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi...    48   8e-05
UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ...    48   1e-04
UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ...    48   1e-04
UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ...    48   1e-04
UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ...    48   1e-04
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    48   1e-04
UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ...    48   1e-04
UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ...    47   1e-04
UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11...    47   1e-04
UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ...    47   1e-04
UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami...    47   1e-04
UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14...    47   2e-04
UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro...    47   2e-04
UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ...    47   2e-04
UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ...    47   2e-04
UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc...    47   2e-04
UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ...    47   2e-04
UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbi...    47   2e-04
UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge...    47   2e-04
UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p...    47   2e-04
UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ...    47   2e-04
UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro...    47   2e-04
UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib...    47   2e-04
UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 ...    46   3e-04
UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 ...    46   3e-04
UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10...    46   3e-04
UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3...    46   3e-04
UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1...    46   3e-04
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    46   3e-04
UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ...    46   3e-04
UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ...    46   3e-04
UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1...    46   3e-04
UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm...    46   3e-04
UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 ...    46   3e-04
UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium...    46   3e-04
UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term...    46   3e-04
UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1...    46   4e-04
UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ...    46   4e-04
UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ...    46   4e-04
UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep...    46   4e-04
UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1...    46   4e-04
UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum...    46   4e-04
UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono...    46   4e-04
UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwell...    46   4e-04
UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ...    46   4e-04
UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R...    46   4e-04
UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ...    46   4e-04
UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ...    46   4e-04
UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr...    46   4e-04
UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ...    46   5e-04
UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10...    46   5e-04
UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ...    46   5e-04
UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ...    46   5e-04
UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ...    46   5e-04
UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon...    46   5e-04
UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus ...    46   5e-04
UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1...    46   5e-04
UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto...    46   5e-04
UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax...    45   6e-04
UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ...    45   6e-04
UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro...    45   6e-04
UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ...    45   7e-04
UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID...    45   7e-04
UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=...    45   7e-04
UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr...    45   7e-04
UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ...    45   7e-04
UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi...    45   7e-04
UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ...    45   7e-04
UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto...    45   7e-04
UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ...    45   7e-04
UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ...    45   8e-04
UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 ...    45   8e-04
UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc...    45   8e-04
UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re...    45   8e-04
UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac...    45   9e-04
UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida...    45   9e-04
UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM...    45   9e-04
UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R...    45   0.001
UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.001
UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy...    44   0.001
UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr...    44   0.001
UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto...    44   0.001
UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3...    44   0.001
UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.001
UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.001
UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep...    44   0.001
UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 ...    44   0.001
UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ...    44   0.001
UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens...    44   0.002
UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.002
UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax...    44   0.002
UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ...    44   0.002
UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo...    44   0.002
UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2...    44   0.002
UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ...    44   0.002
UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte...    44   0.002
UniRef50_Q2BI57 Zn-finger, prokaryotic DksA/TraR C4 type n=1 Tax...    43   0.002
UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ...    43   0.002
UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter...    43   0.002
UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ...    43   0.003
UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family prot...    43   0.003
UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253...    43   0.003
UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega...    43   0.003
UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther...    43   0.003
UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil...    43   0.003
UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Maripro...    43   0.003
UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ...    43   0.003
UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ...    43   0.003
UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ...    43   0.003
UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ...    43   0.003
UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ...    43   0.004
UniRef50_A1SED9 Putative DnaK suppressor protein n=1 Tax=Nocardi...    43   0.004
UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Strepto...    43   0.004
UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax...    42   0.004
UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 ...    42   0.004
UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7...    42   0.004
UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.004
UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1...    42   0.004
UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13...    42   0.004
UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4...    42   0.004
UniRef50_A4F8B9 Possible suppressor protein DnaK n=6 Tax=Actinom...    42   0.004
UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte...    42   0.005
UniRef50_C5CLF2 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.005
UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.005
UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ...    42   0.005
UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus ...    42   0.005
UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ...    42   0.005
UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact...    42   0.005
UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbac...    42   0.005
UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1...    42   0.005
UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu...    42   0.005
UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.006
UniRef50_Q3Z6R5 DnaK suppressor protein, putative n=5 Tax=Dehalo...    42   0.006
UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitroco...    42   0.006
UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact...    42   0.006
UniRef50_A4FJQ8 Putative uncharacterized protein n=1 Tax=Sacchar...    42   0.006
UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.007
UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom...    42   0.007
UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.007
UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro...    42   0.007
UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.007
UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 ...    42   0.008
UniRef50_C9NIY3 Transcriptional regulator, TraR/DksA family n=3 ...    42   0.008
UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu...    42   0.008
UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ...    42   0.008
UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph...    42   0.008
UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.010
UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati...    41   0.010
UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 ...    41   0.010
UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo...    41   0.010
UniRef50_UPI0001B515E7 hypothetical protein SvirD4_35899 n=1 Tax...    41   0.010
UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria...    41   0.012
UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ...    41   0.013
UniRef50_A4XRJ7 Transcriptional regulator, TraR/DksA family n=8 ...    41   0.013
UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini...    41   0.014

>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score =  126 bits (316), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC
Sbjct: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          IHCQQEKDLQKPAYTGYNRRGSKDSQLR
Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/88 (75%), Positives = 76/88 (86%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL  CEEC A IP+ARR+AIPGVRLC
Sbjct: 1  MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ E D +  AY+GYNRRGSKDSQLR
Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score =  109 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 1/89 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRL 59
          MA+G+  D  V EQI++T+ DAI RAR  +    +  + C ECG  IP+ARR  IPGV L
Sbjct: 1  MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60

Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          C+ CQ ++D ++ A++ YNRR SKDSQLR
Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score =  100 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/91 (56%), Positives = 59/91 (64%), Gaps = 3/91 (3%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARAR---GEIPRGESLDECEECGAPIPQARREAIPGV 57
          MA GWA DDAVNEQI  + ++AI R R    +    ES   CEEC  PIP+ARR AIPGV
Sbjct: 1  MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60

Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          RLC+ CQ  +D       G NRRGSKDSQL+
Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91


>UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=Q6U9H2_9CAUD
          Length = 84

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA G+  ++ ++  IN+ +++A+   R    +G++ + CEEC  PIP+ARR AI     C
Sbjct: 1  MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAI-STAYC 59

Query: 61 IHCQQEKD 68
          + CQ   D
Sbjct: 60 VQCQTVHD 67


>UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2
          Tax=Proteobacteria RepID=Q0BZ89_HYPNA
          Length = 87

 Score = 81.0 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 62/88 (70%), Gaps = 1/88 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWA + +V +QI  ++ DA+A AR  +P G  L+ECEECG  IP ARR A+ G R C
Sbjct: 1  MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ  ++ ++P ++  NRRG+KDSQLR
Sbjct: 61 VSCQSVRE-KQPKFSSINRRGNKDSQLR 87


>UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A3ZQT2_9PLAN
          Length = 134

 Score = 76.7 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62
           D+  ++++S + +  +R   +I       RG S  ECE C   IP AR +A+P   LCI 
Sbjct: 50  DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109

Query: 63  CQQEKDLQKPAYTGYNRRGSKDSQL 87
           CQ  ++L++    G + R + + Q+
Sbjct: 110 CQ--RELEELGEDGVSWRQNSEDQV 132


>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59
          M+       +V EQ+  T    I R R +I   G  +  CE CG PIP+ARR+  PGV L
Sbjct: 1  MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57

Query: 60 CIHCQQEKDLQKPAYT 75
          C+ CQ  ++ Q+  Y 
Sbjct: 58 CVECQAYQERQRKHYA 73


>UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=A8R990_9CAUD
          Length = 85

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59
          MA G+A D A   ++ + ++ AI  AR ++    ES   C +C   IP+ARR+AI GV  
Sbjct: 1  MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60

Query: 60 CIHCQQEKD 68
          CI CQ   D
Sbjct: 61 CIGCQSMHD 69


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I ++R +     SL  C  CG PIP+ RR+ +PG+  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57

Query: 61 IHCQQEKDLQK 71
            CQ++ +   
Sbjct: 58 KECQEKLERHS 68


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D V +++    E  I +AR       S   CE C  PIP+ARR A+PGV LC+ CQ+ K+
Sbjct: 6  DLVQQRVEEERERHIHKARSRQA-APSRFLCESCNGPIPEARRAALPGVELCVTCQEIKE 64

Query: 69 LQKPAYTG 76
          L+   Y G
Sbjct: 65 LKSLHYKG 72


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 75.2 bits (183), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I + R +     SL  C  CG PIP+ RR+ +PGV  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57

Query: 61 IHCQQEKDLQKP 72
            CQ   + ++ 
Sbjct: 58 TECQAIIERRQR 69


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 73.3 bits (178), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE      E A+A+ R + P   SL  CE+C  PIP+ARR+ + G   CI CQQ  +
Sbjct: 6  DRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQIYE 64

Query: 69 LQKPAYT 75
           ++  Y 
Sbjct: 65 YKQKGYR 71


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 72.1 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA      D   E     +E A+A      P  ESL  CEECG PIP+ RR+A PG   C
Sbjct: 1  MADEI---DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRC 57

Query: 61 IHCQQEKD 68
          + CQ   +
Sbjct: 58 VRCQSGIE 65


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 71.3 bits (173), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA       +    + +   D I R R ++  G S   C++CGAP+P  RR  IPGVR C
Sbjct: 1  MADEIERFQSHQAMLEA---DRIQRIRQQL-TGISALFCDDCGAPVPAERRRLIPGVRKC 56

Query: 61 IHCQQEKDLQKPAYTGYN 78
          + CQ+ +++Q   Y  + 
Sbjct: 57 VGCQEVQEIQARHYRRWQ 74


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 70.2 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 9  DAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D  N+     +   +AR  G+   +G SL  CEEC  PIP+ARR  +PGVRLC+ CQ   
Sbjct: 5  DRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQTRI 64

Query: 68 DLQKP 72
          +    
Sbjct: 65 EQLAR 69


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 69.4 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D    +     E  I  AR   P   S   CEEC APIP+ARR A+PGV LCI CQ+  +
Sbjct: 6  DLAQAREQEDRERHIHHARRR-PASPSRFLCEECDAPIPEARRMAVPGVALCITCQEIAE 64

Query: 69 LQKPAYTG 76
          ++     G
Sbjct: 65 MKNKHVRG 72


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D    +     E  I+ AR       S   CEEC APIP+ARR AIPGV+ C+ CQ+  +
Sbjct: 6  DLAQLREQEDRERHISNARSRR-HEVSAFICEECDAPIPEARRRAIPGVQCCVTCQEILE 64

Query: 69 LQKPAYTG 76
          L+   Y G
Sbjct: 65 LKSKHYNG 72


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 66.7 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 34/67 (50%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E      E AIA AR  + RG S  ECE+CG PIP AR+ A PG   C+ CQ 
Sbjct: 2  DPFDRAQELEMEQREAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQN 61

Query: 66 EKDLQKP 72
           ++  + 
Sbjct: 62 RRERPRR 68


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 66.7 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   E+    +   IA+AR +     S   C  C A IP+ RR  +PGV  C+ CQQ  +
Sbjct: 6  DIAQERQEMLLAMQIAKARSKPITA-SAFICASCEAEIPEQRRITVPGVIFCVACQQLHE 64

Query: 69 LQKPAYTGY 77
           +K  Y G 
Sbjct: 65 EKKKHYRGI 73


>UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH
          Length = 73

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   EQ    ++  I    G    G S  ECE+CG  IP+ RR A+ G   C  CQ   +
Sbjct: 6  DLACEQSQLLLDKQIKAVTGR-YIGVSAFECEDCGREIPEKRRIAVMGCTRCADCQTVYE 64

Query: 69 LQKPAYTGY 77
          L+   Y   
Sbjct: 65 LKSKHYRSV 73


>UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD
          Length = 213

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 18/87 (20%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ------ 65
           +E+  + +EDA++R R       +  +CE CG PIP  R EAIP  R C+ C++      
Sbjct: 68  DERALADVEDALSRIRQ-----GTYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122

Query: 66  -------EKDLQKPAYTGYNRRGSKDS 85
                  E+D+  PA+  ++R G+ ++
Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 64.8 bits (156), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D          +D IARA G+I +G     C  CG PI +ARR+A+P    C+ CQ+ ++
Sbjct: 6  DEAQALEERERDDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDCQESRE 64

Query: 69 LQKPAYTG 76
              ++ G
Sbjct: 65 RWSRSHRG 72


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 64.0 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   E+    +E  IA AR  + +  S   C +C   IP+ RR AIPGV  C+ CQ+  +
Sbjct: 6  DMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSE 64

Query: 69 LQKPAY 74
           Q+  +
Sbjct: 65 AQQRHF 70


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 63.6 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE + + ++  +A AR  +   ES ++CE+CG PIPQARR A PG   CI CQ   +
Sbjct: 6  DHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQDRHE 64

Query: 69 LQ 70
           +
Sbjct: 65 RR 66


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 62.1 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   +      E A+ + R    +  S   CE+C APIP+ RR+ I GV  C+ CQQ  +
Sbjct: 6  DRAQQLEEMQREIALKKHRT--FKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVTCQQRFE 63

Query: 69 LQKPAYT 75
          +Q+  + 
Sbjct: 64 IQQRNFR 70


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 60.9 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 30 IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
           P+G+S   C +CG  IP  RRE +PGV+ CI CQ+E++     Y
Sbjct: 7  QPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   EQ    ++ A+ + R       S   CE+C  PIP+ RR AI G   CIHCQ  ++
Sbjct: 6  DRATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIHCQSLRE 65

Query: 69 LQK 71
           ++
Sbjct: 66 QRR 68


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D   + I   +  ++A  +  I P   S   C++C + IP+ARR ++PGVRLC+ C   +
Sbjct: 6  DQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVDCASLQ 65

Query: 68 DLQKPAYT 75
          +++     
Sbjct: 66 EIKGRHQR 73


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 9  DAVNEQINSTIEDAI-ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D  N+     + + + +R +     GESL ECE+CG  IP ARRE +PGVR C+ CQ+  
Sbjct: 5  DIANDYAERELAERLYSRVK---YVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYL 61

Query: 68 D 68
          +
Sbjct: 62 E 62


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 59.0 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E        +I  AR       +L +C++CG PIP+ARR+A+PG   C+ CQ+
Sbjct: 3  DPTDRAQEAAADYTRFSIEAARSR-GSQSTLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61

Query: 66 EKDLQK 71
            + ++
Sbjct: 62 TYEQRR 67


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 58.6 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRG-ESLDECEECGAPIPQARREAIPGVRL 59
          M+     D          +E+ IA  R E+  G  SL  CE CG  I + RR+ +PGV+L
Sbjct: 1  MSDDID-DTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQL 59

Query: 60 CIHCQQEKDLQK 71
          C+ CQ+  +  +
Sbjct: 60 CVGCQEVAEHWE 71


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   +     + + +ARA+ +  R ES  EC ECG PIP+ARR+ + G + C HCQ + +
Sbjct: 10 DIEAQLTEVALANQLARAKPKASR-ESAQECGECGDPIPEARRQHMTGCQYCTHCQSDLE 68

Query: 69 LQKP 72
            K 
Sbjct: 69 KMKR 72


>UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD
          Length = 75

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D       + +E +++R   +   G S  EC ECG+ IP+ RRE + GV  C+ C  
Sbjct: 7  DPLDRAAALSQAHLEVSLSRI--KKFEGVSAHECVECGSEIPKKRRELLQGVTDCVDCAA 64

Query: 66 EKDLQKPAY 74
           K+     Y
Sbjct: 65 IKETLSKNY 73


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE+  + ++ A+A+ R       S   CE+CG  IP+ARR+A PG   CI CQ+ ++
Sbjct: 5  DQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQELRE 63

Query: 69 LQKP 72
              
Sbjct: 64 HPAR 67


>UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2J7_9PLAN
          Length = 148

 Score = 57.5 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 9   DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62
           D   ++INS + +  +R    I       R  +   CE C  PIP  R +A+P   +CI 
Sbjct: 49  DTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVMCIK 108

Query: 63  CQQEKDL 69
           CQ+E + 
Sbjct: 109 CQREAEK 115


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 56.7 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  +E      + A++ A        S + C ECGAPIP+ RR A+PGV LC+ CQ  K+
Sbjct: 6  DMGHEAEELARKAALSMAGTRRADAPSRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65


>UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas
          putida KT2440 RepID=Q88IG2_PSEPK
          Length = 72

 Score = 56.3 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  N++    ++  ++ AR   P  ESL++C  CG  IP+ RR A+ G + CI CQ   +
Sbjct: 6  DLANDRAQWHLDLVLS-ARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQGFFE 64

Query: 69 LQKPAYTG 76
           +   Y G
Sbjct: 65 KKGARYAG 72


>UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium
           RepID=A3DD29_CLOTH
          Length = 212

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              + + I  A  ++ +G S  +CE CG  I + R EA+P  RLCI C+  K+
Sbjct: 70  EERLLEDINEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121


>UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales
           RepID=C1DXT7_SULAA
          Length = 144

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           Q +      I  A  +I  G     CEECGA I + R EAIP VRLCI C Q +++    
Sbjct: 56  QADRETLYLIDLALRKIDSGI-YGICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI---- 110

Query: 74  YTGYNRRGSKD 84
              + +R  ++
Sbjct: 111 VRQFQQRNEEE 121


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 8  DDAVNEQINSTIEDAIARARG--EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          D     +    I++  A  R    I    S   C +CG  IP +RRE+IPGV LC++CQ+
Sbjct: 7  DSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVSLCMYCQE 66

Query: 66 EKD 68
           ++
Sbjct: 67 WRE 69


>UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae
          RepID=Q3ZL39_ESCBL
          Length = 76

 Score = 54.8 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 1  MASGWAN-DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
          M   +    D   E+    +   + R +      ES   C +C  PIP AR +A+P    
Sbjct: 1  MTKAFDRASDLEMEERERLLNKHLRRVKELP---ESYGFCNDCEQPIPAARLQALPDAVT 57

Query: 60 CIHCQQEKDLQKPA 73
          C+ CQ  ++ ++  
Sbjct: 58 CVTCQAIREHRRKH 71


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 54.0 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 7  NDDAVNEQINSTIEDAIARARGEIPR-GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          ND+          +  I   R ++     S + CE CGA IP AR+ A+PGV LC  CQ 
Sbjct: 6  NDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQD 65

Query: 66 EKDLQKPA 73
           K+ Q   
Sbjct: 66 VKEKQDVH 73


>UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67Q17_SYMTH
          Length = 269

 Score = 54.0 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           + D  +   +   I++ I  A   + +G +   CEECG PI   R +A P    CI CQQ
Sbjct: 58  SKDLGLRSHMLRRIQE-IESALQRMDQG-TYGICEECGRPIDPERLKAFPSATTCITCQQ 115

Query: 66  EKDLQ 70
            ++ +
Sbjct: 116 RREAR 120


>UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium
           modesticaldum Ice1 RepID=B0TGP7_HELMI
          Length = 238

 Score = 53.6 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D A  ++ +  +++ IA+A+  I  G     CE C   IP AR  A+P   LCI CQ 
Sbjct: 60  GKDLATRDRFSRELDE-IAKAKRRISEGI-YGICERCHQKIPDARMAAMPTATLCIECQS 117

Query: 66  EKDLQKP 72
            ++   P
Sbjct: 118 HEEELHP 124


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 53.2 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 27 RGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          R       S   C+ CG  IP+ARR A+PGV LC+ CQ+ ++    
Sbjct: 27 RNVHNGRISNTCCDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72


>UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter
          arcticus 273-4 RepID=Q4FUG7_PSYA2
          Length = 66

 Score = 53.2 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  N+ ++ T+   ++RA  +  +  SL EC ECG  IP A+R+A+ GV LC+ CQ   +
Sbjct: 6  DRANDYVDLTMAHCLSRA-PKFDK-PSLTECMECGEDIP-AKRQAMGGVTLCVDCQSVFE 62

Query: 69 LQKP 72
           +  
Sbjct: 63 KRGK 66


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 8  DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D++V  Q  +  +    RA   +    S   C  CG  IP+ RR+A+ GV+LCI CQ   
Sbjct: 5  DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQTLS 64

Query: 68 DLQK 71
          + ++
Sbjct: 65 ERKQ 68


>UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UR73_RHOBA
          Length = 140

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAIPGVRLCIH 62
           D V +++NS + +  +R    I    +  E      CE+CG PIP  R +AIP    CI+
Sbjct: 49  DTVQDELNSQLVEVESRELLAIEEAIARFEEGRFGDCEDCGKPIPLNRLKAIPYAVDCIN 108

Query: 63  CQQEKDLQ 70
           C++  + +
Sbjct: 109 CRRAAERE 116


>UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM
          Length = 203

 Score = 52.5 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           N+ +   +E+A+ +   +I        CE CG PIP+ R +A+P    C+ C+++ +
Sbjct: 69  NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKKKSE 120


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 52.1 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D   E        A++  R       S + CEECG  IP+ RR A+PG + C  CQ   +
Sbjct: 5  DTAAEIEELQRNAALSAHRINR-NAVSAERCEECGEDIPEPRRAAVPGCQTCSECQSVIE 63

Query: 69 LQKP 72
          L+  
Sbjct: 64 LKNK 67


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 52.1 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 1  MASGWAN-DDAVNEQINSTIEDAIARARGEIP---RGESLDEC--EECGAPIPQARREAI 54
          M   +           +  + D   R +   P   +G S   C  + CG PIP+ RR+A+
Sbjct: 1  MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60

Query: 55 PGVRLCIHCQQEKDLQ 70
          PGV+ C+ CQQ  + +
Sbjct: 61 PGVKFCVECQQRLEKK 76


>UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3
           Tax=Propionibacterium acnes RepID=D1YA14_PROAC
          Length = 159

 Score = 52.1 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           +S +  D  ++   N+      ++   ++    +   CE CG PI +AR +A P   +C+
Sbjct: 91  SSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFPRATMCV 150

Query: 62  HCQQEKDLQ 70
            C+Q ++ +
Sbjct: 151 KCKQRQERR 159


>UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C120_SPHTD
          Length = 130

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +  +  I RA  ++ +GE    CE C  PIP  R EA+P  R CI CQ + D ++
Sbjct: 72  ADRKVLIERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          +I          AR  IP      ECE+CG PIP+ARR A P    C  CQ   +    
Sbjct: 9  EIEEMNRAQALAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQARHERHAK 67


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D + EQ     +  I  AR      G+S   CE CG  IP  R++AIPGVR C  CQ+  
Sbjct: 20 DLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTECQRVL 79

Query: 68 DLQKPAY 74
          ++++  Y
Sbjct: 80 EIRQKQY 86


>UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V43_DESDG
          Length = 149

 Score = 51.7 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +  + +E A+ R             CEECG  I +AR +A P   LCIHCQ++++ + 
Sbjct: 85  RQLAAVESALHRI-----ATGGFGRCEECGDEIGEARLKANPTTTLCIHCQEDREAEA 137


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 51.7 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D   E      + A+  +A+   P+  S   C++CG  IP+ARR A  G + CI CQ+  
Sbjct: 6  DQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERI 65

Query: 68 DLQKPAYT 75
          +  K  Y 
Sbjct: 66 EHAKAQYA 73


>UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12
          Tax=Desulfovibrio RepID=A1VE28_DESVV
          Length = 78

 Score = 51.3 bits (121), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAIPGVRLCIH 62
          D  ++      E AI+ AR  +  G   +       C ECG  IP+AR +A+PG  LC  
Sbjct: 11 DQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGCGLCRE 70

Query: 63 CQQEKD 68
          C +E +
Sbjct: 71 CAEEME 76


>UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2
           Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD
          Length = 222

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           + D A++++++  I+ AI  A      G+    CE C   IP  R EA+P   +C  C +
Sbjct: 57  SRDVAIHDRLHHRIQ-AIDSALQRYEEGK-YGLCEHCQKEIPLGRLEALPFTTVCTECSR 114

Query: 66  EKDLQKPA 73
            +++++  
Sbjct: 115 LEEMEEQH 122


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           Q    IE+A+ R R           CE+CG PIP+ R E +P  R C+ CQQ +
Sbjct: 62  QTLEDIEEALLRLRQ-----GRYGLCEKCGKPIPEGRLEILPYARCCVSCQQRR 110


>UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1
          Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM
          Length = 73

 Score = 50.9 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGE-----SLDECEECGAPIPQARREAIPGVRLCIHC 63
          D   +Q  +  + AIA    +              C +CG  IP  R +A+P V  C+ C
Sbjct: 5  DHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRCVSC 64

Query: 64 QQEKDL 69
          Q +K+ 
Sbjct: 65 QDKKER 70


>UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6I0P9_9BACT
          Length = 136

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D    ++ + ++ ++ +A   +  G S   CE+CG  I + R  A+P  +LCI CQ++K+
Sbjct: 61  DLALLEMRNRMKRSVDQALLRLEEG-SYGNCEDCGGEIEEKRLMAMPFAQLCIKCQRKKE 119

Query: 69  LQKPAYT 75
             +    
Sbjct: 120 ELEKIER 126


>UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4
          Length = 242

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
            D A+NE     +++ I  A   I  G S  +CE CG  IP  R EAIP  R CI   +E
Sbjct: 63  KDIALNEHSEQLLDE-IDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQHAEE 120

Query: 67  KDLQKP 72
           K +   
Sbjct: 121 KSVSNK 126


>UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2
           Tax=Cystobacterineae RepID=Q1D0G7_MYXXD
          Length = 130

 Score = 50.5 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           + + +  A+ + R +    ++  ECEECG  IP  R  A+P    C+ CQ  KD
Sbjct: 65  VLARVLKALGKLRDDP---DAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          +   +      + AI  AR +   G   +EC ECG PIP ARR  +P    C  CQ   +
Sbjct: 8  ELAQQIEQMQRDVAIELARAQC-HGAGAEECVECGEPIPAARRACVPYATRCTECQGRFE 66

Query: 69 LQKPAY 74
           ++  Y
Sbjct: 67 QRRTGY 72


>UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LEV8_RALME
          Length = 123

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           DA+ E     +ED IA ARG +  G S   C EC  PIP  R +A P  + C  CQ+E +
Sbjct: 59  DAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTACQREHE 116

Query: 69  LQK 71
            ++
Sbjct: 117 QKR 119


>UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex
          degensii KC4 RepID=C9R7U4_AMMDK
          Length = 176

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          A D A+ E     ++  I  A   +  G +   CE CGAPIP+ R EA+P   LC  C++
Sbjct: 37 AKDLALREDALLKLQ-VIEDALRRLEEG-TYGYCESCGAPIPRERLEAVPYTTLCHACKE 94

Query: 66 EKDLQ 70
           ++ +
Sbjct: 95 RQEAK 99


>UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=45 Tax=root RepID=A7ZJE9_ECO24
          Length = 73

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D+ +E        AI + R    +  S   C ECG PI + RR  + G R C  CQ++ +
Sbjct: 6  DSASEIEELQRNTAI-KMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQEDLE 64

Query: 69 LQKP 72
          L   
Sbjct: 65 LISK 68


>UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE
          Length = 143

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRG-------ESLDECEECGAPIPQARREA 53
           +A          E+  +     +  ++ +  R         +   C EC   IP  R +A
Sbjct: 53  VADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGVCSECDNEIPGKRLKA 112

Query: 54  IPGVRLCIHCQQEKDLQK 71
           +P    C+ CQ   D ++
Sbjct: 113 VPWTPYCLDCQDSADRRR 130


>UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus
           RepID=A5UPY9_ROSS1
          Length = 121

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
             + + +  A   +  G +   C +CG PIP  R EA+P   LC+ CQ  ++  + 
Sbjct: 66  RELLEQVNAALRRLDEG-TYGICADCGEPIPIERLEALPYATLCVRCQSTRERARR 120


>UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes
           RepID=Q7MQQ3_WOLSU
          Length = 113

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDE--CEECGAPIPQARREAIPGVRLCIHCQQ 65
           D  + +++   +E  + +    + R +S D   C+ C  PIP  R  A+P   +C+ C  
Sbjct: 51  DQNIQKRLLLDLEARLKKLEYALTRIDSPDFGICQICDEPIPYKRLFALPEATICVDCAN 110

Query: 66  EK 67
           E+
Sbjct: 111 ER 112


>UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS
          Length = 120

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           + +    IE A+ R            +C +CG  IP+ R  AIP   +CI CQ  ++ ++
Sbjct: 63  DLRCLQQIESALLRI-----EQGRYGKCADCGESIPEDRLRAIPYSLMCIECQSARESKR 117

Query: 72  PAY 74
            A+
Sbjct: 118 RAF 120


>UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia
           RepID=A4XKS6_CALS8
          Length = 209

 Score = 49.8 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           + I +A  +I +G +   C  C   IP  R  AIP    CI CQ++ + ++
Sbjct: 75  ELIEKALSKIEKG-NFGYCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRE 124


>UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4
           RepID=B3DUR8_METI4
          Length = 249

 Score = 49.8 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            I+D++ R         +   C+ CG PIP  R +AIP  R  + CQ++ + +K
Sbjct: 164 EIDDSLKRIEDN-----TYGICQMCGKPIPIIRLQAIPYARFTVDCQRQLEKEK 212


>UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D3H2_PELTS
          Length = 242

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 5   WANDDAVNEQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +        + N+ +   AI RA  +I  G +  +C+ CG  IP  R EA+P    C  C
Sbjct: 63  FERSKDFALRENAMLAVAAIDRALAKIENG-TYGKCDNCGREIPLERLEAVPSTVCCKKC 121

Query: 64  QQEKDLQKPAYTG 76
           ++ ++        
Sbjct: 122 KEAEEKNTRPEAR 134


>UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella
          RepID=Q0HYS5_SHESR
          Length = 68

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 25 RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
          +A+   P   S  +C ECG  IP+ RR+AI GVRLC+ CQ  ++ Q
Sbjct: 23 KAQAAKPVPPSATDCAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68


>UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776
           RepID=C1ZKC1_PLALI
          Length = 152

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 24/110 (21%)

Query: 1   MASGWANDDAVN---------EQINSTIEDA---------IARARGEIPRGESLDECEEC 42
           M   ++ DD +N         EQ     + A         I RA   I  G     C++C
Sbjct: 29  MGLAYSPDDGINDLGETAALVEQSELHTQLAALETRELMQINRALALIEEGH-YGVCQKC 87

Query: 43  GAPIPQARREAIPGVRLCIHCQQEKD----LQKPAYTGYNRRGSKDSQLR 88
              IP AR +A+P   +C+ CQ+ ++      + AY+  + R + D + R
Sbjct: 88  SKAIPLARLQAVPFTTVCVECQRRQEDLGDNDEDAYS-VDWRKAYDHERR 136


>UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria
           RepID=Q2LSS1_SYNAS
          Length = 150

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              +   +  A   I  GE    CE CG PI + R  A P   LCI C+ +++  + 
Sbjct: 91  ERKLIAKMQEAIKRIDEGE-FGLCEVCGGPISEKRLMARPVTTLCIDCKTKQEKLEK 146


>UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae
           RepID=Y250_AQUAE
          Length = 145

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           D+  N +I +  E  I  A  +I +G +   CE CG  IP+ R  AIP  R C  C +E 
Sbjct: 58  DNLSNVEIATLRE--IDYALEKIEKG-TYGICERCGEEIPEPRLCAIPWTRYCAKCAEEV 114

Query: 68  DLQKPAY 74
           + +   Y
Sbjct: 115 ERESGTY 121


>UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis
           ortholog n=1 Tax=Clostridium acetobutylicum
           RepID=Q97H97_CLOAB
          Length = 200

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
              + + I  A  ++  G     CE CG PI + R E +P    C+ CQ +
Sbjct: 70  EEALLNKIGNAIDKVEHG-GYGICEVCGKPISEERLEFVPYAENCVECQNK 119


>UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM
          2246 RepID=UPI00016C4B65
          Length = 95

 Score = 49.8 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL---Q 70
          ++ +     I RA   +  G +  +CE C   IP AR  A+P    C+ CQ+E +     
Sbjct: 3  ELEAKELAQIERALRRLKAG-TYGKCEVCSIKIPVARLNALPFSTFCVDCQREMERDGGW 61

Query: 71 KPAYTGYNRRGSKD 84
             Y         D
Sbjct: 62 SADYGANGWDRITD 75


>UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2
           Tax=Betaproteobacteria RepID=A1K6D2_AZOSB
          Length = 135

 Score = 49.4 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           I  AR  I  GE    C +CG  IP AR EA P    C+ CQ   + 
Sbjct: 76  IEAARERIAEGE-AGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 49.4 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 3  SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
            + +   + EQ  +    A  R        ES  + E CG PIP+ RR A+ G R C+ 
Sbjct: 2  DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61

Query: 63 CQQEKD 68
          CQ+ ++
Sbjct: 62 CQERRE 67


>UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS
          Length = 157

 Score = 49.4 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +E+A+ R +       +   C+ CG  IP+AR  A+P    C++C++E   ++
Sbjct: 83  LEEALKRIKN-----GTFGVCKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130


>UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9
          Length = 127

 Score = 49.4 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 5   WANDDAVNEQINSTIED----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           + N D  N +  S++E      I +A   I +  +   C  C   I + R  AIP   LC
Sbjct: 54  FDNMDGNNLEALSSVEKKKLHLINQALYRISQ-NTYGNCLACDKSITRERLVAIPYAFLC 112

Query: 61  IHCQQEKDLQKP 72
           I CQ +K+ +  
Sbjct: 113 ISCQTKKEKKGK 124


>UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LGY5_SYNFM
          Length = 257

 Score = 49.0 bits (115), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
           + I  A G+I  GE    CE CG  I   R EAIP  RLC+ C   +D ++   T
Sbjct: 65  EQIDLALGKIAIGE-YGICESCGDDIALKRLEAIPWARLCVDC--ARDFEQRHET 116


>UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4
          RepID=B9JYG7_AGRVS
          Length = 72

 Score = 48.6 bits (114), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          +   E+I    +  +A AR ++ +     EC +CG  IPQARR A P    C  CQ   +
Sbjct: 8  ELAEERIEQERDAKVAAARADLKKA-GATECLDCGRAIPQARRFAYPSAIRCFDCQVSIE 66

Query: 69 LQ 70
           +
Sbjct: 67 RE 68


>UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium
          extorquens AM1 RepID=C5B4E4_METEA
          Length = 73

 Score = 48.6 bits (114), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D +       ++  +A  R      + + ++C++CG  IP  RR A P  R C+ CQ   
Sbjct: 6  DMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVRCQTLA 65

Query: 68 DL 69
          + 
Sbjct: 66 ER 67


>UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155
           RepID=A6DK24_9BACT
          Length = 147

 Score = 48.6 bits (114), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           +  +  +  +N   +  I+  + +   E         C +C   IP+AR +AIP  +LC+
Sbjct: 63  SDNFMREINLNVMSDEGIKVQLVQQAIERLDEGKYGRCVDCRDDIPEARLDAIPYAKLCV 122

Query: 62  HCQQEKDLQ 70
            C++ ++ Q
Sbjct: 123 ACKETRESQ 131


>UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM
          12804 RepID=A9ID32_BORPD
          Length = 94

 Score = 48.6 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 15 INSTIEDAIARARGEIP---RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
                 A+   R  +    RG +   C +CG  I  AR   +PG   C+ CQ   + Q+
Sbjct: 29 AEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDCQTAHEKQQ 88

Query: 72 PAYTGY 77
            +  Y
Sbjct: 89 TRHARY 94


>UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1
           Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT
          Length = 116

 Score = 48.6 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            +Q    IE+A+ R         S   CE C  PI + R +  P  + CI C++  + ++
Sbjct: 61  QKQELKEIEEALKRI-----EEGSYGICEMCDEPIQEERLKIKPYAKYCIICREIIEKEE 115

Query: 72  P 72
            
Sbjct: 116 K 116


>UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE
          Length = 149

 Score = 48.6 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 5   WANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
           + N + ++ ++   I DA+ R    +  G     C EC  PI   R +A+P  R C+ CQ
Sbjct: 74  FLNRNTIDMKLLREIADALHR----MDTGH-YGVCPECEEPISAKRLDAVPWARYCVTCQ 128

Query: 65  QE 66
           ++
Sbjct: 129 EK 130


>UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula
           baltica RepID=Q7UEL7_RHOBA
          Length = 121

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +  + IE+A+ R R       +  +CE+CG  IP  R + +P  R C+ CQ+  +
Sbjct: 65  RELADIEEALERLRD-----GTFGDCEDCGKSIPMNRLQVVPHARRCVRCQKASE 114


>UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella
           thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA
          Length = 251

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D V  Q+   IEDA+           +   C  CG  IP+ R EAIP   LC+ C+++ +
Sbjct: 68  DNVQVQL-RKIEDALQSI-----AEGTYGYCRRCGREIPRERLEAIPETTLCLECRRKME 121

Query: 69  LQKPAYTG 76
            +   ++ 
Sbjct: 122 GKADKHSR 129


>UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1Q506_9BACT
          Length = 140

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           E    +I+DA+ R         +   CE C   I + R +A+P   LC++CQ+E++L
Sbjct: 86  EDSVRSIDDALERI-----EEGTFGICEACEKKINRERLKAVPYASLCVNCQREEEL 137


>UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema
           denticola RepID=Q73KX9_TREDE
          Length = 119

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              N +    I+ A+ R R          +C  C   IP+ R +A+P    CIHCQ + +
Sbjct: 60  GENNVKKLQKIDSALERIR-----EGKYGKCITCKEQIPEDRLKALPYALKCIHCQAKSE 114

Query: 69  LQ 70
            +
Sbjct: 115 KK 116


>UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfonatronospira thiodismutans ASO3-1
           RepID=C0GTL3_9DELT
          Length = 243

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +A++ Q  S + + I  A   +  G +   C+ CG  I +AR +A+P  R C  C  + +
Sbjct: 56  NALDSQARSEL-NHIDHALDRMIIG-NYGICDSCGQEISEARLQAVPWARYCRVCVNKAE 113

Query: 69  LQ 70
            +
Sbjct: 114 EK 115


>UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CWL7_HALOH
          Length = 228

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
            D+A  + + + +E+A+ R         +   CE+CG  I + R E IP   LC  CQ +
Sbjct: 66  RDNA--QVLLNKVENALNRL-----EEGNYGLCEKCGQEIREERLETIPYATLCERCQAK 118

Query: 67  KDLQKPAYTGYNRR 80
           ++ +      YNR 
Sbjct: 119 EEGKD-----YNRD 127


>UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis
           vadensis ATCC BAA-548 RepID=D1N407_9BACT
          Length = 133

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +   IEDAI R            +C+ECG PI + R    P    C+ C++  + Q   
Sbjct: 77  VLRLIEDAIKRLVD-----GEYGKCQECGEPISEGRLAIRPYAVYCVKCKEMHEKQGWH 130


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             +     RA   +  G +   CE CG PI +AR +A P   LC+ C+Q+++ +
Sbjct: 186 REVLSQTERALDRLDAG-TYGLCENCGNPIGKARMQAFPRATLCVECKQKQERR 238


>UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum
          intermedium LMG 3301 RepID=C4WG44_9RHIZ
          Length = 76

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M  G    +  + +     +  IA AR  + +  +L +C  CG  I   RR A+P  R C
Sbjct: 1  MKIGNFAHELADMRAEQERDAGIAAARAPLKQTGTL-DCIRCGDEIEAERRAALPSARRC 59

Query: 61 IHCQQEKDLQK 71
          + CQ+  +  +
Sbjct: 60 VDCQESFERWQ 70


>UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8
           Tax=Deltaproteobacteria RepID=A1AL35_PELPD
          Length = 118

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              + + I  A   I  GE    CEECG  I +AR +  P   LCI+C+ E + ++ 
Sbjct: 61  ERKLINKIKEALSRIDSGE-FGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEK 116


>UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas
           RepID=A5W685_PSEP1
          Length = 154

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           ++++   +E A+ R        ES   C++ G PI   R    P  + CI  Q+  +   
Sbjct: 94  DQRLLPQLEMALDRIAD-----ESFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQLD 148

Query: 72  PAYTGY 77
                 
Sbjct: 149 RHQRQV 154


>UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root
          RepID=YO82_BPP2
          Length = 74

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           N D + EQ    +E  I  AR +   G S   CEEC APIP ARR A P    C+ CQ 
Sbjct: 3  DNVDFIQEQQAELLERQINAARVK-HCGASALVCEECDAPIPAARRAAYPSATRCVSCQS 61

Query: 66 EKDLQKPAYTG 76
            + +   Y  
Sbjct: 62 VFEAKNKHYRR 72


>UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788757
          Length = 187

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D A+ E +   +E  I  A   + +GE    C ECG  IP  R EA+P    C+    
Sbjct: 64  GRDLAIQETLERELE-QIDAALQRMDQGE-YGTCAECGREIPYERLEALPYTAYCLEHTP 121

Query: 66  EKDL 69
            KD+
Sbjct: 122 RKDI 125


>UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae
           RepID=C9S0U4_GEOSY
          Length = 269

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
            D A+ E     + + I RA G I  G +   C  CG PIP  R EA+P    C
Sbjct: 64  KDLALKEHAERELRE-IERALGAIADG-TYGTCRVCGRPIPYERLEALPTTLYC 115


>UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis
           HTCC2594 RepID=Q2NBT1_ERYLH
          Length = 104

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGE--SLDECEECGAPIPQARREAIPGVRLCIHC 63
           DD   E ++  +   I + R  + R E  S   C +CG PIP+ R EA P    CI C
Sbjct: 46  DDEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKC 103


>UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2
           Tax=Planctomycetaceae RepID=D2R7B0_9PLAN
          Length = 123

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
           D +  EQI + +E   A A            C ECG  IP+AR E +P    C+ C ++
Sbjct: 70  DGSTLEQIEAALERIEAGA---------YGVCTECGCKIPKARLEVLPYTAHCVKCAEK 119


>UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7
           Tax=Cystobacterineae RepID=A7H9X1_ANADF
          Length = 120

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
           + + I+ A+AR         +   CE C   I   R EA P   LCI C++E++ ++ ++
Sbjct: 65  LLAKIDKALARI-----ENGTFGICERCEEEISVKRLEARPVTTLCIRCKEEQEQKEKSF 119

Query: 75  T 75
            
Sbjct: 120 G 120


>UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales
           RepID=A1SL71_NOCSJ
          Length = 283

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 2   ASGWANDDAVN-EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A+ +  D  +            I RA   I  G +   CE CG PI + R  A P   LC
Sbjct: 215 ATSFERDHELTVLNSERDKLAQIERALARIDDG-TYGVCESCGNPIGKMRLMAFPRATLC 273

Query: 61  IHCQQEKDLQ 70
           + C+Q ++ +
Sbjct: 274 MTCKQREERR 283


>UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales
           RepID=D0LZD2_HALO1
          Length = 124

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
             ++ + +  A  ++  G +   CE C  PI + R EA P   LCI C++ ++  +  + 
Sbjct: 66  EKSLLNKLDLALRKLGEG-TFGICEVCEEPIGKKRLEARPETTLCIQCKEAQERDERVFG 124


>UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbinolicus DSM 2380
           RepID=Q3A5P4_PELCD
          Length = 127

 Score = 47.1 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           DA  E+I   I++A+ R R       S   CE CG  I  AR E +P  R C+ C+QE +
Sbjct: 60  DAGREEIL-EIDEALERLRD-----GSYGRCEACGKTIDIARLEILPFTRRCLTCRQEAE 113

Query: 69  LQKPAYTG 76
            +     G
Sbjct: 114 KEAKTKAG 121


>UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V318_9AQUI
          Length = 133

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 17 STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
            I++A+ R         +   CE CG PI + R EAIP   LC    +E + 
Sbjct: 51 KKIDEALERI-----SEGTYGYCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98


>UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage
          gene n=1 Tax=Aliivibrio salmonicida LFI1238
          RepID=B6EIS7_ALISL
          Length = 71

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
          Q    + + +A+ + ++    S +EC EC   IP+AR+EA+ G + C++CQ+  D 
Sbjct: 14 QTEVALANHMAKQKNKVEIK-SAEECIECEKAIPKARQEAVKGCQYCVNCQELADK 68


>UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L3E3_9DELT
          Length = 131

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           + Q+   I +A+AR +           C+ECG  I  AR  A P   LC+HC+   +   
Sbjct: 61  DRQLIGEINEALARVKD-----GDYGICQECGEEIGLARLRAQPTATLCVHCKSMLEEMG 115

Query: 72  PAY 74
             Y
Sbjct: 116 RPY 118


>UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria
           RepID=DKSA_BUCBP
          Length = 151

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              + + I +   ++   +    CE CG  I   R EA P   LCI C+   ++++    
Sbjct: 92  ERKLIEKIEKTLKKVENKD-FGYCESCGIEIGIKRLEARPTANLCIDCKTLSEIREKQIL 150

Query: 76  G 76
           G
Sbjct: 151 G 151


>UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii
           DSM 11347 RepID=B5YGE3_THEYD
          Length = 129

 Score = 46.7 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
               +  I   I  A  ++  G +   CE CG  IP+ R + +P    C  CQ++ ++ +
Sbjct: 64  QLSTHRDILKKIEEALRKLEEG-TYGICEMCGDEIPEERLKILPFAIYCRDCQEKIEMIE 122

Query: 72  P 72
            
Sbjct: 123 K 123


>UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q02C95_SOLUE
          Length = 128

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
             + ++ +    +E+A+ R             C  C   I + R +A+P  R C+ CQ E
Sbjct: 59  RMNGLDYRQLRMVEEALDRL-----ESGDFGICLACDESIAEKRLQALPWARYCVKCQDE 113


>UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MH72_ALKOO
          Length = 226

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 17/91 (18%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ- 65
            ++  N + N  +E  I  A  +I  G +   C+ CG  I + R E +P    CI C + 
Sbjct: 64  QNNLENHEKNRLLE--IDDAVQKINEG-TYGNCQICGNKILEERLEIMPASITCIDCAEK 120

Query: 66  -------------EKDLQKPAYTGYNRRGSK 83
                        E+++  PA+   N+ G  
Sbjct: 121 EIESYKLSTDRSVEEEILSPAFERNNKDGED 151


>UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10
           Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX
          Length = 206

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
           I   IEDA  R         +   C  C  PI + R EA+P   LC  C +  DL+    
Sbjct: 75  ILRQIEDAFKRM-----EIGTYGICAHCHKPIEEERLEALPYTVLCAECAKNNDLELKDL 129

Query: 75  TGYNRRGSKDSQLR 88
              N R +++  ++
Sbjct: 130 K--NSRPNEERMIK 141


>UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium
           RepID=A0Q071_CLONN
          Length = 206

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           E+        I+ +  ++  G +   C  C   IP  R EA+P  + C+HC+  +D 
Sbjct: 67  EKAELEKLHEISESLYDMEHG-TYGICRICKNQIPDDRLEAVPYAKYCVHCKNNQDK 122


>UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1 Tax=Psychroflexus
           torquis ATCC 700755 RepID=Q1VTU7_9FLAO
          Length = 127

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           T+   + RA  +I  G +   C+ C   IP+AR E +PG   C+ C + K +
Sbjct: 75  TVSKYLLRAMDKIEEG-TYGLCDVCKKEIPRARLEIVPGALSCVVCDKLKKI 125


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           +    +   RA   +  G +   CE CG PI +AR +A P   LC+ C+Q+ + +
Sbjct: 179 SRERLEQTERALLRMDAG-TYGVCENCGKPIGKARMQAFPHAILCVDCKQKSERR 232


>UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C5L2_SPHTD
          Length = 132

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           +I++ + + +  A   + RG +   C +CG  I  AR +A+P    C+ CQ   + +
Sbjct: 75  RIDAELAE-VDAALDRLERG-TYGVCIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129


>UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium
           minutum Pei191 RepID=B2KE71_ELUMP
          Length = 258

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D I  A  +I +G    +CE C   +P+ R +A+P  R C+ CQ  K+
Sbjct: 210 DQIESALRKIDKGI-YGKCENCRQLLPKKRIKALPFARYCVVCQSSKE 256


>UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12E87_POLSJ
          Length = 134

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 9   DAVNEQINSTIEDAIARAR----GEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
           DA  +     +E  +A  R        +      C +CG  I   R  A+P    C  CQ
Sbjct: 62  DAKVDHAAHELEQVLAALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQ 121

Query: 65  QEKDLQKPA 73
              + ++  
Sbjct: 122 AIHEHERQP 130


>UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria
           RepID=A5EW31_DICNV
          Length = 143

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   I +A   I +G     CE+C   I   R EA P   LCI C+   + ++ ++ 
Sbjct: 80  ERKLLRKIDKALERIKQGH-FGYCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF- 137

Query: 76  GYNRR 80
            YN R
Sbjct: 138 -YNER 141


>UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 Tax=Shewanella
           RepID=B1KFH6_SHEWM
          Length = 131

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 6   ANDDAVNEQ-----INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +  DA+ +Q         ++  I R +      +    C ECG PI   R    P   +C
Sbjct: 62  SRIDAIQQQEMAQASEVLMQQHIVRIKQIFLDTDEYGFCLECGEPIGLGRLTIHPTAEMC 121

Query: 61  IHCQQEKD 68
           I CQ E +
Sbjct: 122 IGCQSEAE 129


>UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1
           RepID=A2SLK5_METPP
          Length = 122

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           D ++ A   +  G S   CE CG PI   R  A+P  R C+ CQ++ D 
Sbjct: 70  DEVSAALQRLNTG-SYGHCERCGEPIGLPRLRALPEARHCLDCQEQADR 117


>UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1
           bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG
          Length = 119

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +    DAI  A  +I +  +  +CE C   I   R + IP  + CI CQ+E +
Sbjct: 62  DKMTLDAINDALVKIEK-NAYGKCEGCSNNILLERLKVIPWAKYCIQCQEESE 113


>UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F3S7_ACIC5
          Length = 139

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 11  VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
            ++  N   + ++ R   E     S  EC ECG  I   R EA+P    CI CQ++  ++
Sbjct: 71  FSQGTNKHTQLSLVRLALERLEDGSYGECAECGEDISPRRLEAVPWTPYCISCQEK--VE 128

Query: 71  KPAYTGYNR 79
              + G +R
Sbjct: 129 NGGFEGGSR 137


>UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium
           Ellin514 RepID=B9XR79_9BACT
          Length = 192

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 3   SGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGV 57
             +  D A+     ++     IE+A+ R         +   CE  G PIP+AR EAIP  
Sbjct: 88  DNFDRDFALSLLSSDQDAIYEIEEALKRIEKN-----TYGVCELTGKPIPKARLEAIPWT 142

Query: 58  RLCIHCQQEKDLQ 70
           R  +  Q + + +
Sbjct: 143 RFTVQAQAQLEKE 155


>UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZJ9_DESAD
          Length = 115

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +EDA+ R    + +     ECEECG  IP AR   +P  R C++C +  +
Sbjct: 69  LEDALNR----LEKDSFFGECEECGEDIPLARLLTLPESRYCVYCAEHLE 114


>UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7
          Length = 69

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA  +       E  +  +     + R   P G SL  C+ECG  IP+ARR A+ G+  C
Sbjct: 1  MADCFDRAQ-ARELQDRELALQAHQVRVR-PSGPSLTHCQECGEQIPEARR-ALGGIIRC 57

Query: 61 IHCQQEKDL 69
            CQ   + 
Sbjct: 58 TPCQARFEK 66


>UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL
          Length = 121

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 9   DAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
            + N++ +   +E A+ R         +  EC  CG+ I   R EA+P  R CI CQ++ 
Sbjct: 58  QSANDRNLLQMVEGALIRI-----GEGTYGECVSCGSEINSKRLEAVPWARYCIGCQEKI 112

Query: 68  DL 69
           + 
Sbjct: 113 EK 114


>UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1
          RepID=Q2WA51_MAGSA
          Length = 74

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 20/43 (46%)

Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
          P GES   C  CG  IP  RR A+PG   C  C Q+     P 
Sbjct: 29 PTGESAYFCRSCGERIPDERRAAVPGTNHCTFCAQQITAASPH 71


>UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae
           RepID=A4X6U9_SALTO
          Length = 132

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
                   A   +  G +   CE CGA IP  R E  P    C+ C+Q ++ + 
Sbjct: 79  DRRAQFEHALTRLEEG-TYGFCEGCGASIPVERLEIFPSATTCVTCKQTRERRA 131


>UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea
           34H RepID=Q48AS1_COLP3
          Length = 104

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2   ASGWANDDAVNE-QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A+   ND  ++E    + +E ++ ++  +         C EC  PI   R  A+P    C
Sbjct: 40  ATETENDGVLDEIHHEAKLELSLVKSALKRITEGLYGSCVECEEPINPDRLSALPYTTKC 99

Query: 61  IHC 63
           I C
Sbjct: 100 IKC 102


>UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root
          RepID=A5EYQ4_VIBC3
          Length = 69

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 8  DDAVNEQINSTIEDAIARARG-EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
          D A  E     +  A  RAR  +     S   C EC  PIP+ R+E + G + C  CQ  
Sbjct: 6  DAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTPCQAA 65

Query: 67 KDLQ 70
          K+ +
Sbjct: 66 KEQR 69


>UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT
          Length = 202

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 36  LDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              CE CG  I   R EA P    CI C+   ++++ 
Sbjct: 162 YGYCESCGVEIGIKRLEARPTATKCIDCKTVDEIKEK 198


>UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LMB8_SYNFM
          Length = 122

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           NE++   I + + R R           CEECG  I   R +A P    CI C++  + + 
Sbjct: 63  NERLVQEILNGLQRIR-----TGDFGVCEECGKDIELNRLKAHPSATQCIKCKKAAERKA 117

Query: 72  P 72
            
Sbjct: 118 R 118


>UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7QCE7_CATAD
          Length = 275

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           ++    E A+AR        ++   CE CG P+ + R +A P   LC+ C+Q+++ +
Sbjct: 224 EMLQQTERALARL-----AADTYGVCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275


>UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268
           RepID=C8PIH5_9PROT
          Length = 118

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            ++    IE A+ R         +   CE CG  I   R +  P  RLCI C+++ + Q 
Sbjct: 62  QQKAFLEIESALKRI-----ENGTYGLCESCGEQISLERLKVNPEARLCISCKEQAEKQN 116

Query: 72  PA 73
            +
Sbjct: 117 RS 118


>UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas
          testosteroni KF-1 RepID=B7WXU2_COMTE
          Length = 76

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 1  MASGWANDDAVNEQI-NSTIEDAIARA-RGEIPRGESLDECEECGAPIPQARREAIPGVR 58
          M   +    A   Q+    + D   RA        +S  EC  CGA IP+ARR+A+PG +
Sbjct: 1  MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATEC-ACGALIPEARRKAVPGCQ 59

Query: 59 LCIHCQQEKDLQK 71
           C+ C+  ++ +K
Sbjct: 60 RCVKCESAQERKK 72


>UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10
           Tax=Actinomycetales RepID=A6WCW5_KINRD
          Length = 159

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             + +   RA   +  G     CE C  P+ +AR +A P V LC+ C+   + +
Sbjct: 107 RELLEQTQRALVRLGSGV-YGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159


>UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium
           retbaense DSM 5692 RepID=C8X580_DESRD
          Length = 115

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           + +A  ++  GE    CEECG  I   R  A P  RLCI CQ++ +   
Sbjct: 68  VEQALHQLANGE-YGLCEECGEEIGVPRLVACPSARLCIECQEQLERAA 115


>UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM
          Length = 234

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D A+ E   +T+  AI  A  ++  G     CE C   I Q R EAIP    CI C+ 
Sbjct: 62  GKDFALREDAITTL-GAIDDALDKMEEGM-YGICEVCHQEISQDRLEAIPYTTQCIDCKS 119

Query: 66  EKDLQKPAYTGYNRRGSKDSQLR 88
             +    ++     R +++  L+
Sbjct: 120 RDEHLPKSHE----RSAEEDVLK 138


>UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora
           aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO
          Length = 103

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 24  ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           A+A   +  G +   CE CG  IP AR E +P  R C+ CQQ +
Sbjct: 61  AQALKRMSEG-TYGVCERCGQDIPTARLEILPSARFCVPCQQRR 103


>UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1
          RepID=B0ZSI9_9CAUD
          Length = 75

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M+           ++        AR +         + C ECG  I   RR+A+P    C
Sbjct: 1  MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60

Query: 61 IHCQQEKDLQKPAYT 75
            CQ+  D     Y 
Sbjct: 61 FGCQEFVDRTAKGYR 75


>UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGP9_BDEBA
          Length = 126

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 22  AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           AI RA G+I  G +  +CE C   I   R +  P   LCI C +E++ Q
Sbjct: 74  AIERALGKIADG-TYGQCESCSEIINARRLQVRPFTALCIDCMEEQESQ 121


>UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1
          Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK
          Length = 72

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 7  NDDAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           +D   E      E  IA +    +  G     C++CG  I +  R AI GV+ CI CQ+
Sbjct: 3  PEDWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEI-EKERRAIKGVKRCIFCQE 61

Query: 66 EKDL 69
            + 
Sbjct: 62 RYER 65


>UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6C001_9PLAN
          Length = 141

 Score = 45.5 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 13  EQINSTIEDAIARARGEIPRGESL------DECEECGAPIPQARREAIPGVRLCIHCQQE 66
           + + S + +   +   +I R  SL        CE C   IP AR +A+P    C+ C ++
Sbjct: 43  QDLESHLAEIEYKELMQIRRAISLIQEGRYGHCESCNKNIPIARLKAVPYAMFCVSCAEQ 102

Query: 67  KD 68
           ++
Sbjct: 103 RE 104


>UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus
           RepID=Q473A0_RALEJ
          Length = 124

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 6   ANDDAVNEQINSTIED-----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A ++ V  Q ++ +E      A  RA  E  +      C +CG  IP +R +A P  R C
Sbjct: 49  AEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGTCTDCGEAIPYSRLQAYPTARRC 108

Query: 61  IHCQQEKDL 69
             CQ+  + 
Sbjct: 109 ADCQRGHER 117


>UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT
          Length = 123

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           ++ E+ N   +  I  A   +  G +   C EC   I + R   +P  RLC+ CQ++ +L
Sbjct: 55  SLQEKRNRERQ-MIDEALVSLEEG-TYGICVECNTEISEKRLAVMPFARLCVECQEKIEL 112

Query: 70  QKPAYTGYNR 79
            +    G  R
Sbjct: 113 LEKIERGEQR 122


>UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT
          Length = 123

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              +   I +A   I  GE   EC+ CG PI   R EA P   LCI C+  ++ ++ 
Sbjct: 64  ERRLIKKIDQAIERIQNGE-FGECDACGGPISVKRLEARPVTTLCIECKTAQEQEER 119


>UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas
          mendocina ymp RepID=A4XZG1_PSEMY
          Length = 72

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG--VRLCIHCQQE 66
          D  N+++   ++  +A       +    +ECE+CG PIP  R +A+       C+ CQ  
Sbjct: 6  DIANDRMLDELDRRLANH-ALARQCPVAEECEDCGDPIPFERVQALAKLPCLRCVECQGY 64

Query: 67 KDLQ 70
           + +
Sbjct: 65 HERK 68


>UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL
          Length = 245

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
           +E   + +EDA+ R         S   C  CG PI   R  AIP    C  
Sbjct: 73  HELHLARVEDALERIED-----GSYGYCATCGKPISYERLRAIPETAYCKD 118


>UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72G22_DESVH
          Length = 176

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           E     +E+A+ R             CE CG  IP AR +A P  RLC+ CQQE +
Sbjct: 110 EHRIGLLENALRRL-----EAYDYGVCEGCGEDIPVARLKASPATRLCVFCQQESE 160


>UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales
           RepID=A7K6F3_VIBSE
          Length = 208

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I +   +I + +    CE CG  I   R EA P   LCI C+   ++++
Sbjct: 85  NRDRERRLIKKIEKTLDKI-KEDDFGFCESCGVEIGVRRLEARPTADLCIDCKTLAEIKE 143

Query: 72  P 72
            
Sbjct: 144 K 144


>UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE
          Length = 136

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           A    ++ +V+ +    ++DA+ R         S  +C  CG PI  AR EAIP    C 
Sbjct: 64  ADEGLHNSSVDSETLQQVDDALRRI-----EQGSYGKCVICGKPIEPARLEAIPWTPYCK 118

Query: 62  HCQQEKD 68
             Q+  +
Sbjct: 119 ADQERLE 125


>UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding
          protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO
          Length = 76

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  NE      + AI + + +     ++  C +C   IP+ R++   G   CI CQ+  +
Sbjct: 6  DRANEYTEIMQQLAIQKHQQKTREKSTVKYCLDCQEEIPEIRQKN--GYCRCIDCQRIIE 63

Query: 69 LQKPAYT 75
            +  Y 
Sbjct: 64 KHQRIYR 70


>UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J2D3_DESDA
          Length = 130

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 35  SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGS 82
              +C +CG  IP  R  A PG   C  CQQ+++          +RG+
Sbjct: 74  GPRQCVDCGEDIPLKRLVAAPGTVRCFSCQQQEERAAAPLAATVQRGT 121


>UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V602_ACIBY
          Length = 72

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 2  ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
          AS     D   E     ++      + +     SL ECEECG  IP  R+     V LC+
Sbjct: 5  ASMTDKIDIAQELQLKQVQ-----IQPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCV 58

Query: 62 HCQQEKDLQKPAY 74
           C+  ++     Y
Sbjct: 59 ECKNTQEKLSKRY 71


>UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter
           RepID=C6E710_GEOSM
          Length = 130

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 22  AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           A+  A+  + +G +  +CE CG  I   R   +P    C+ CQ+EK+
Sbjct: 75  ALEEAQRRVEQG-TYGKCENCGEVIDIQRLRLMPFAAYCVSCQKEKE 120


>UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia
           profundicola AmH RepID=B9L783_NAUPA
          Length = 117

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
           + I  A  +I  G +   CE C  PI +AR +  P  + CI C++  + +  
Sbjct: 67  EEINDALKKIDEG-TFGICEMCEDPIQEARLKIKPYAKYCIICREIIEKEGK 117


>UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U5V5_9DELT
          Length = 111

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
                        +  A   +   E    C +C  PIP AR +A+P  + C+ C +
Sbjct: 56  EAQLSKTRVRLARLGEALRRVDDDEDFGLCIDCSKPIPMARLKAMPETQYCVDCAE 111


>UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales
           RepID=A4XDN2_SALTO
          Length = 139

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
                + RA   +  G     CE CG PIP  R  A P   LC+ C+Q  + +
Sbjct: 88  ERITQVERALERLDEG-GYGWCERCGNPIPVERLAAFPSATLCVTCKQLAERR 139


>UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM
          Length = 137

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 2   ASGWANDD---AVNEQ--INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
           A+ +  DD   +  ++  + S I++A+ R    +        CEE G  I   R +  P 
Sbjct: 54  ANSYEADDIIMSAQKRNSLLSEIDEALERMEQGV-----YGYCEETGDEIGFGRLDLEPT 108

Query: 57  VRLCIHCQQEKDLQKP 72
            R C+  Q+  D +  
Sbjct: 109 ARYCVDVQERLDKKNR 124


>UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8ESP2_OCEIH
          Length = 224

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
            D A+ E     +ED I  A   I  G +   C  CG  IP  R EAIP    C+ 
Sbjct: 63  KDIALQEHTEKELED-INAALHAIEEG-TYGICTVCGEDIPHERLEAIPTTDRCVK 116


>UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VG86_9BACT
          Length = 148

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 6   ANDDAVNEQINSTIEDAIARARG-----EIPRGESLDECEECGAPIPQARREAIPGVRLC 60
            +D  + EQ    +E    + R      +     +   CE CG  I + R E IP    C
Sbjct: 73  GSDTNLMEQSVMMLESEREKIRQLNEALQRISDGTYGICEFCGEFIQENRLEIIPYATCC 132

Query: 61  IHCQQEKDLQKP 72
           + C+++ + +K 
Sbjct: 133 VACKEKNEDKKR 144


>UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2
           RepID=C0QJK4_DESAH
          Length = 114

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           S +E A+AR             C  C  PIP AR   +P   LC+ C
Sbjct: 67  SKLERALARI-----GSPDFGLCSACEEPIPFARLMILPETELCVKC 108


>UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD
          Length = 118

 Score = 44.7 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           D     +I       I + R  + R    +  ECE C  PI   R  A P   LCI C+ 
Sbjct: 50  DRNFELRIRDRERKLIMKIRQALERIEQGTFGECECCEEPIGAERLRARPVTTLCIDCKT 109

Query: 66  EKDLQKP 72
           E++ ++ 
Sbjct: 110 EQERKEK 116


>UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM
          Length = 119

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 18  TIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
             E  +   R  + R   E    C++CG  IP AR  A+P    C+HC   ++
Sbjct: 56  RTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCVHCMSARE 108


>UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter
           RepID=A1VXK8_CAMJJ
          Length = 120

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
            IED++ + +       +   CE C   I   R +  P  R CI C+Q  +  K    
Sbjct: 68  EIEDSLDKIKN-----GTYGICESCDDEIDSQRLKVKPHARYCITCRQIAEQGKKHEN 120


>UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK
           suppressor protein n=2 Tax=Brachyspira
           RepID=C0QW50_BRAHW
          Length = 121

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           Q      D +  A   I  G +  +C +C   I + R  A+P    C++C  + + +K  
Sbjct: 60  QKEKDKLDMLNNALKRIEEG-TYGKCIDCKEEINEERLTALPYTLRCVNCMSKYEDKKRR 118

Query: 74  YT 75
             
Sbjct: 119 EK 120


>UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B2I3M6_ACIBC
          Length = 66

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 9  DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D   E  +  ++  IA R R E   GES  EC ECG  IP+ RR A+ GV+ CI CQ + 
Sbjct: 6  DKAQESADYLLQQEIANRCRFE---GESEKECVECGEEIPE-RRRALGGVKFCIECQTKL 61

Query: 68 DLQKP 72
          + ++ 
Sbjct: 62 ERKRR 66


>UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae
           RepID=Q221D7_RHOFD
          Length = 124

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
            +A D   +E+++  ++ A+ R         S   C +CG  IP AR  A P    CI C
Sbjct: 59  EFALDARDSEELD-RLDAALRRIED-----GSYGLCVDCGVGIPAARLHAAPDALRCIAC 112

Query: 64  QQEKDLQK 71
           Q++ +  +
Sbjct: 113 QEKLEKAQ 120


>UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Streptosporangium roseum DSM 43021
           RepID=D2B0C3_STRRD
          Length = 110

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           A    + + +++    A+ R         +   C+ CG  IP  R +A P  R C+ CQ+
Sbjct: 46  AKSGLLADIVSAERNLAVVRQALRDVTELTYGRCDGCGLAIPFERLKARPLARFCMLCQR 105

Query: 66  EKD 68
             +
Sbjct: 106 RHE 108


>UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R5D7_9PLAN
          Length = 150

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
            V  +    I+ AI + R           C+ CG PI   R +A+P    CI C +  + 
Sbjct: 60  EVESRELMQIDRAIEKMR-----AGRYGLCDSCGGPIKLIRLQAVPYAIECIECARRDER 114

Query: 70  QKPAYTGYNRRGSKD 84
           ++    GY R G  D
Sbjct: 115 RESGL-GYRRGGRFD 128


>UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI
          Length = 119

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           D  + E  +  +E  I RA  +I  GE    CE C  PI   R +A P  R CI C++  
Sbjct: 54  DGLIFEHHHKELE-YIERALEKIENGE-YGICEMCDEPISIQRLKAKPHARFCIICREIV 111

Query: 68  DLQKPA 73
           +     
Sbjct: 112 EKDLKG 117


>UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4
           Tax=Hydrogenothermaceae RepID=B2V854_SULSY
          Length = 147

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 11  VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           V  +I   I+D + R      +  +   CE CG  I + R EA+P   LCI   +E++
Sbjct: 63  VEIEILKAIDDTLERI-----QNGTYGICEVCGKEIEEERLEAVPWTTLCIQHAKEQE 115


>UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia
           RepID=B2UIX3_RALPJ
          Length = 120

 Score = 44.0 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 5   WANDDAVNEQINSTIED-AIARARGEIPR---------GESLDECEECGAPIPQARREAI 54
           + N D  +E++     D  + R R E+ +           S   C +CG  IP  R +A 
Sbjct: 43  FENADLADEEVGEQTNDVMLVRYRSELEQLNAARERMQQHSYGICVDCGEAIPFLRLQAQ 102

Query: 55  PGVRLCIHCQQEKDLQK 71
           P    C+ CQ   + + 
Sbjct: 103 PTAMRCLPCQTACERRW 119


>UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SPR7_HAHCH
          Length = 107

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 2   ASGWANDDAVN-EQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
           A    NDD +N  ++ + IE + + +A   + +GE    C  CG  IP++R + +P   L
Sbjct: 40  AQERENDDVLNALKVETEIEINQVKKALQRLQQGE-YGVCVACGEDIPESRLQVLPFAEL 98

Query: 60  CIHCQQEKD 68
           C+ C  + +
Sbjct: 99  CVSCASKSE 107


>UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HSA8_9FIRM
          Length = 227

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           + + +  A  ++  G +   C+ CG  I   R +AIP    CI C+++ 
Sbjct: 73  LLEQVEHALEKVAAG-NYGICDNCGREIGIERLQAIPYAARCIVCEKKY 120


>UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax=Streptomyces
           RepID=Q9ZBS4_STRCO
          Length = 108

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59
           A     ++Q+ S  + AI R   EI          +   C  CG P+P  R E +P  R 
Sbjct: 39  AESGQADDQLMSAQKAAIERVLKEIDEAFARVEEGTYGACLGCGKPVPGERLEILPYTRY 98

Query: 60  CIHCQQE 66
           C+ CQ+ 
Sbjct: 99  CVACQRR 105


>UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae
           RepID=B4U7Z4_HYDS0
          Length = 118

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           ++   IE  +AR         +   CE CGA IP  R +A P   +CI C++ ++
Sbjct: 64  KLLKKIEYTLARI-----ENGTYGYCEVCGAEIPYERLKARPVTSMCIRCKELEE 113


>UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ
          Length = 213

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
             I++AIA              C +CG  IP  R  A P    C+ CQ+  +
Sbjct: 71  RQIDEAIALINQ-----GKYGLCIDCGQKIPVDRLFANPVAIRCVACQKRVE 117


>UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2
           Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU
          Length = 131

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           D  VNE     +E A+ R            +C +CG  I   R    P  + C+ CQ+  
Sbjct: 67  DRQVNEM--REVEAALKRLADL-----DYGDCIDCGGEIGFDRLMVYPTAQRCVRCQEVH 119

Query: 68  DLQKPAYT 75
           +       
Sbjct: 120 EKTYMHEN 127


>UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfomicrobium baculatum DSM 4028
           RepID=C7LTL7_DESBD
          Length = 133

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 34  ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
           +S   CE CG  I   R  AIP    CI CQ+  D     +  
Sbjct: 80  DSYGICEMCGEHIADRRLLAIPSALFCIECQEMIDRLPGEFGR 122


>UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria
           RepID=A8PLZ9_9COXI
          Length = 295

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 1   MASGWANDDAVNEQI-----NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIP 55
           M+     ++  N ++        +   I  A  ++  G     C  CG  I   R EA P
Sbjct: 216 MSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGH-YGFCSSCGVEIGIRRLEARP 274

Query: 56  GVRLCIHCQQEKDLQKPAYTG 76
              LCI C+   ++++    G
Sbjct: 275 TANLCIDCKTLDEIREKQTGG 295


>UniRef50_Q2BI57 Zn-finger, prokaryotic DksA/TraR C4 type n=1 Tax=Neptuniibacter
           caesariensis RepID=Q2BI57_9GAMM
          Length = 123

 Score = 43.2 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +  I D +A A   I  G+    C +CG  I  +R  A P    CI CQ   + +   
Sbjct: 66  DEEIADCLA-ALKRIDEGD-FGFCLDCGEEIELSRLRACPTASRCIRCQSVLEAEVRK 121


>UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria
           RepID=B5EG80_GEOBB
          Length = 118

 Score = 43.2 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
           I++A+AR         +   CE C   I +AR +A P   LCI C+ E++ ++ 
Sbjct: 68  IQEALARI-----EAGTFGICEVCEEDISEARLKARPVTTLCIDCKMEQEKKER 116


>UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria
           RepID=A6T2Z9_JANMA
          Length = 310

 Score = 43.2 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   + ++   I  GE    CEE G PI   R  A P   L +  QQ ++L++  Y 
Sbjct: 251 ERKLLKKVQQSLLSIDSGE-YGWCEETGEPIGVPRLLARPTATLSLEAQQRRELKQKLYG 309


>UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia
           multivorans RepID=A9AKZ2_BURM1
          Length = 256

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 22  AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           AI RA+  +  G S  +C +C  P+  AR  A P    C HCQ   + +
Sbjct: 200 AIRRAQQRMVDG-SYGDCIDCDGPVGYARLRARPTAERCTHCQALYERR 247


>UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family protein n=1
           Tax=Plesiocystis pacifica SIR-1 RepID=A6FZV7_9DELT
          Length = 130

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 34  ESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
           E    CE+C  PI + R E +P V +C+ CQ++++    
Sbjct: 80  EEYGMCEDCEEPIKRRRLELMPWVSVCVQCQEKRERDGR 118


>UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF
          Length = 124

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
              +   I RA  +I    S   C+  G  IP AR  AIP   + +  Q + + 
Sbjct: 66  EYELLRQINRALEKIEES-SYGICDVSGEEIPLARLMAIPYATMTVKAQSQFEK 118


>UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter
          actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD
          Length = 72

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M           E + +        A+       +   C +CG  I  +R +A+P    C
Sbjct: 1  MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60

Query: 61 IHCQQEKDLQKP 72
          I CQQ  +  + 
Sbjct: 61 ISCQQLHEESQK 72


>UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YK78_THEYD
          Length = 123

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              +   I +   +I  G +   CE CGA IP  R EA P   LCI C+ E++  + 
Sbjct: 64  ERKLLKKIEKTLEKINNG-TYGICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119


>UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus
          RepID=Y1497_HAEIN
          Length = 75

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 9  DAVNEQINSTIEDAIARARGEI-------PRGESLDECEECGAPIPQARREAIPGVRLCI 61
          D +NE+  + +++ +A                E+  +C ECG PIP  R  A P    C+
Sbjct: 6  DQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPFAHRCV 65

Query: 62 HCQQEKD 68
           CQQ+ +
Sbjct: 66 SCQQDWE 72


>UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Mariprofundus
          ferrooxydans PV-1 RepID=Q0EWC9_9PROT
          Length = 73

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDE-----CEECGAPIPQARREAIPGVRLC 60
             D  +E+   + ++A+ R R        LDE     C +C   IP AR  A+P    C
Sbjct: 3  DPCDMGSEREEISRQEALDRVRYRPLEAPLLDEEYRRICRDCECLIPSARLAAVPHAVRC 62

Query: 61 IHCQQEKD 68
            CQ+E +
Sbjct: 63 ASCQEEHE 70


>UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella
           koreensis DSM 16069 RepID=C7R8Q8_KANKD
          Length = 120

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           D A++E      +  +   R  + R        C EC  PI   R E  P   LC+ CQ 
Sbjct: 53  DQAMSEASVERDKKRLVAVRKALKRIEEGQYGFCLECDEPISAKRLEVAPETELCLDCQS 112

Query: 66  EKDLQKPA 73
            K+     
Sbjct: 113 FKEEHDRK 120


>UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia
           RepID=B4D0A5_9BACT
          Length = 233

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 2   ASGWANDDAV----NEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
           +  +  D A+     EQ     IE+A+ R         +   CE  G PI   R EA+P 
Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRI-----ELGTYGVCEMSGKPIAHPRLEALPF 184

Query: 57  VRLCIHCQQEKDLQKP 72
            R  + CQ + + Q  
Sbjct: 185 ARYTVECQSQIEKQGK 200


>UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces
           RepID=D1X2L9_9ACTO
          Length = 248

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           +++    E A+AR         +   CE CG PI +AR +A P   LC+  +Q+++ +
Sbjct: 195 QEMLEQTERALARL-----EAGTYGLCEICGKPIGKARMQAFPRATLCVEDKQKQERR 247


>UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ
          Length = 216

 Score = 42.8 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           EQ    IE A+ +            +CE CG  I   R +A+P  R CI C
Sbjct: 70  EQKLREIEIALEKIAN-----GDYGKCESCGKEINNERLDAVPYTRYCISC 115


>UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4
           Tax=Anaeromyxobacter RepID=A7HEW6_ANADF
          Length = 130

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 16  NSTIEDAIARARGEIPRGES-LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            + +   I RA  ++         CE+C   I   R   +P    C  CQ + +
Sbjct: 63  QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTE 116


>UniRef50_A1SED9 Putative DnaK suppressor protein n=1 Tax=Nocardioides sp. JS614
          RepID=A1SED9_NOCSJ
          Length = 92

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 10 AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
          AV           I  ARG +  G +   C  CG  IP  R E  P    C+ C
Sbjct: 37 AVQRGALKQTIAEIDAARGRLSDG-TFGTCTGCGGAIPADRLEFRPWAGTCVSC 89


>UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9YVQ5_STRSW
          Length = 132

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRLCIH 62
               EQ+     D I R   EI          +   C  C  PIP  R E +P  R C+ 
Sbjct: 67  QEAGEQLMPGQRDTIERVLKEIDAAFVRVQEHTYGTCLGCSKPIPVERLEILPYTRFCVP 126

Query: 63  CQQ 65
           C++
Sbjct: 127 CRR 129


>UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis
           ATCC 14672 RepID=UPI0001AEFD73
          Length = 111

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 8   DDAVNEQINSTIEDA--IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           DD +  Q  +  +    I  A   +  G +   C+ CG  IP  R E +P  R C+ CQQ
Sbjct: 50  DDLLMMQKYAVRQALTDIDAAFTRLDEG-TYGTCQGCGRDIPVERLEILPYARCCVPCQQ 108


>UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2
           Tax=Gammaproteobacteria RepID=B8GMT5_THISH
          Length = 132

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
             +E A+ R       G+S   C +CG  I   R +A P  + C  CQ + + 
Sbjct: 75  RDVEAALLRI-----AGQSYGICTDCGDAIAYERLDAYPTAKRCARCQAQHEK 122


>UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7
           Tax=Actinomycetales RepID=A0LTP3_ACIC1
          Length = 527

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           +    E A+AR         +   CE CG PI + R +A P   LC+ C+Q ++ +
Sbjct: 477 LLVQTEHALARIAD-----GTYGRCENCGNPINKLRLQANPRATLCVSCKQREERR 527


>UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021L0_SOLUE
          Length = 129

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
             + DA+ R         S   C+ C   I   R   +P    C+ CQ+  D
Sbjct: 63  RGLRDALERIED-----GSYGICQRCDEDISLKRLRVVPWASYCLRCQESAD 109


>UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12HC6_POLSJ
          Length = 130

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           + V+ Q +     AI +A+  +  G S   C +CG PIP  R +A P    CI CQ   +
Sbjct: 61  EHVDLQRDQEELRAIQQAQERMADG-SYGGCIDCGQPIPFERLKAQPSASRCIACQTRFE 119


>UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13 Tax=Clostridium
           RepID=C6Q1P6_9CLOT
          Length = 201

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             +I   I  +   I +G +  +C  CG  I + R E IP    C+ CQ+
Sbjct: 70  ELSIIKKIENSLSNIDKG-TYGKCSICGKDIKEERLEFIPYTDHCVECQK 118


>UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter
           RepID=Q39WX5_GEOMG
          Length = 130

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           Q  + +++A+ R +           C+ECGA I + R    P    CI CQ  ++
Sbjct: 71  QELTRMDEALGRLK-----EGRYGFCDECGAEIDEGRLRVAPYAPCCISCQTRRE 120


>UniRef50_A4F8B9 Possible suppressor protein DnaK n=6 Tax=Actinomycetales
           RepID=A4F8B9_SACEN
          Length = 125

 Score = 42.4 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           +A+ RA   +  G +   CE CG+PI   R EA+P    CI C   +
Sbjct: 79  EALDRAAARLDDG-TYGLCERCGSPIAPERLEALPATTTCIACATHR 124


>UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria
           RepID=A4SHJ5_AERS4
          Length = 128

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +  A   I  G+    CE CG  I   R +A P  R C+ CQ  K+     
Sbjct: 73  LQGALRRINEGD-FGYCESCGDEISLKRLQARPESRFCVECQSTKEFNDTH 122


>UniRef50_C5CLF2 Transcriptional regulator, TraR/DksA family n=1 Tax=Variovorax
           paradoxus S110 RepID=C5CLF2_VARPS
          Length = 130

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
           I  AR  +  GE    C +CG  IP  R EA+P    C+ CQQ  +   P
Sbjct: 73  IEAARERLRTGE-FGTCIDCGVQIPLDRLEAMPASARCLECQQRHERTHP 121


>UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium
           ochraceum DSM 14365 RepID=D0LUD2_HALO1
          Length = 127

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           + + I+ A+ R +       ++DECEECG  I   R  A P   LCI C+ E++  +  
Sbjct: 67  LLNKIDAALERLK-----AGTIDECEECGGEISVQRLIARPVTTLCIDCKSEREQSEEG 120


>UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L9K5_9DELT
          Length = 120

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           D A   ++       I + +  + R    +  EC ECG  I  AR +A P   LCI C+ 
Sbjct: 50  DRAFTLRLRDRERRLIKKIKEALDRIDEGTYGECVECGEDISVARMKARPVTTLCIKCKS 109

Query: 66  EKDLQK 71
            ++  +
Sbjct: 110 RQEADE 115


>UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus
          RepID=A8FE57_BACP2
          Length = 135

 Score = 42.4 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D V++Q+ + I+ A+ R         +   CE+ G  IP  R +A+P  R  I  ++ ++
Sbjct: 33 DQVDDQLEAEIDAALKRMED-----GTYGICEKTGKEIPYERLKAVPYTRYSIDAKKNEE 87


>UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter
           RepID=B3EAN1_GEOLS
          Length = 218

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
                 +I  A   I  GE    CEEC   IP  R + +P  R C+ C+ + +  +    
Sbjct: 141 EREKLHSIDEALLRIAEGE-YGICEECDEDIPMGRLKVLPFTRHCVKCKSDLEKFQAQTR 199

Query: 76  GYNRRGS 82
                 +
Sbjct: 200 RIEEDRA 206


>UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria
          RepID=B3B1J8_ECO57
          Length = 75

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 6  ANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
              AV E+     + + + R R  +        C +CG  IP AR  A+P    C++CQ
Sbjct: 5  DRAQAVMERGSERALCNRLTRKRQAVDT-PGRRVCADCGGEIPAARLVAVPDAIRCVNCQ 63

Query: 65 QEKDLQ 70
             + +
Sbjct: 64 NIMEAR 69


>UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbachia
           RepID=C0R4V6_WOLWR
          Length = 130

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 5   WANDDAVNEQINSTIEDAIARARGEIPR--GESLDECEECGAPIPQARREAIPGVRLCIH 62
           ++++D+ NE++    +D   + +  + +    +   C+  G  I   R +A P    CI 
Sbjct: 55  YSDEDSGNEELIKRRKDRKEKIKEALEKIKLGTYGYCDGTGEEIGVERLKANPLAIYCIE 114

Query: 63  CQQEKDLQKPAYT 75
            Q+  + +K  Y 
Sbjct: 115 EQERVEKEKNVYN 127


>UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSA0_ACIC1
          Length = 113

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            V ++    + +A+ R         +   C  CGAP+P+ R EA P    C+ CQ + +
Sbjct: 57  EVAQEQRRQVLEALQRI-----ENGTYGLCVSCGAPLPEGRLEAKPEAARCLSCQAKLE 110


>UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus
           RepID=Q2B4E3_9BACI
          Length = 252

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
            D A+ E  N  + D + +A   I  G +  +C ECG  +P  R EA+P    C+ 
Sbjct: 64  KDQAIEEHQNEEL-DKVNKALQAIEDG-TYGKCRECGKDLPFERLEAVPTALYCVD 117


>UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1UB56_9DELT
          Length = 116

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 32  RGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           R      C+ECG PI  AR +A P  RLCI CQ   + +  A
Sbjct: 72  RETDYGTCDECGDPIGLARLKANPSARLCIVCQSAAEEEDHA 113


>UniRef50_Q3Z6R5 DnaK suppressor protein, putative n=5 Tax=Dehalococcoides
           RepID=Q3Z6R5_DEHE1
          Length = 123

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 15  INSTIEDAIAR---ARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
           +   + D IA    A  +  RG     CE C  PI  AR EA+P  RLC+ C+ +
Sbjct: 65  MEKKLLDQIAETEYALDKYDRGV-YGLCEMCKEPIDPARLEALPQARLCMQCKSK 118


>UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231
           RepID=A4BMT6_9GAMM
          Length = 132

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 14  QINSTIED--AIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +I+  + +   I  A  ++  G S   C +CG  I   R +A P V  C  CQ   + ++
Sbjct: 66  EIDRHVREIQRIEAALRKLADG-SYGYCMDCGEAIAAQRLQANPAVARCYACQTRFEQEE 124

Query: 72  PA 73
             
Sbjct: 125 IG 126


>UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria
           RepID=Q1MS84_LAWIP
          Length = 133

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              +   I  A   I  G +   CE+CG  I   R +A P  +LCI+C+  ++
Sbjct: 74  ERRLIRKIQSALQRIDDG-TYGVCEDCGDDIGTPRLKARPVTKLCINCKSRQE 125


>UniRef50_A4FJQ8 Putative uncharacterized protein n=1 Tax=Saccharopolyspora
          erythraea NRRL 2338 RepID=A4FJQ8_SACEN
          Length = 56

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          +  + IE A+AR R  +        C  CG+ IP     AIP   LC+ CQ+
Sbjct: 7  RALADIEVALARMRDGM-----YGLCRACGSDIPLQLLTAIPKTTLCLSCQR 53


>UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas
          auensis DSM 9187 RepID=C4LBC7_TOLAT
          Length = 76

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLD-ECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D  N+ +   ++D +AR   ++ +   +   C +C  PIP  R  +I   + C+ CQ   
Sbjct: 6  DRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVECQALF 65

Query: 68 DLQK 71
          + Q+
Sbjct: 66 EEQE 69


>UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15
          RepID=Q52PP5_9CAUD
          Length = 77

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 6  ANDDAVNEQINSTIEDAIARAR--GEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
             D  ++      EDAI +    G++P      +C +C   IP+ R     G   CIHC
Sbjct: 6  DESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIHC 63

Query: 64 QQEKDLQKPAYTG 76
          Q + +  +  Y G
Sbjct: 64 QTKFEFNQRNYKG 76


>UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01U65_SOLUE
          Length = 129

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 35  SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           S   C  C   I   R +A+P  + CI CQ+  D  +
Sbjct: 76  SYGVCMHCEEDIKPKRLDAVPWTKYCIKCQEAADRHE 112


>UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3
           Tax=Proteobacteria RepID=Q0AHN9_NITEC
          Length = 135

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           I  A   I  G+    C +CG P+   R +A P  + C  CQ  ++ 
Sbjct: 80  IVAAEDRIATGK-YGLCIDCGEPVRYKRLDAYPTAKRCFTCQVRRER 125


>UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio
           sp. JE062 RepID=B6R7R7_9RHOB
          Length = 118

 Score = 41.7 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +D    +    I+ A+ R +      E    C ECG  IP+AR    P    C+ C
Sbjct: 63  NDRQRARELQRIDGALQRIK-----EEEYGFCLECGEDIPEARLRVDPAALYCVSC 113


>UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 Tax=Desulfovibrio
           vulgaris RepID=A1VGY3_DESVV
          Length = 113

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 10  AVNEQINSTIEDAIARARGEIPR----GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           +VNE   +T    +A     + R          C ECG  IP AR  ++P    C++C +
Sbjct: 54  SVNEVALATARKRLAGLEYAVKRLGDDDPEYGYCVECGEAIPFARLMSMPEASRCVNCAE 113


>UniRef50_C9NIY3 Transcriptional regulator, TraR/DksA family n=3 Tax=Streptomyces
           RepID=C9NIY3_9ACTO
          Length = 131

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE---------CEECGAPIPQARREA 53
                + +      +     +ARAR  +   +   E         CE C  PIP  R E 
Sbjct: 56  DEHDPEGSSTAFERAHTASLLARARDHLAEVDRALERLERGDYGRCERCREPIPPGRLEV 115

Query: 54  IPGVRLCIHC 63
            P    C+ C
Sbjct: 116 RPAATTCVRC 125


>UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus
          SB RepID=Q2LQQ9_SYNAS
          Length = 86

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
          C +CG  I  AR  A+P    CI CQ  K+ ++  
Sbjct: 51 CRDCGEEIQPARLAAMPFAVRCIECQGIKERRERH 85


>UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6C0K2_DESAD
          Length = 116

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 36  LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              CE+CG  I  AR +A P  R C+ CQ   +
Sbjct: 76  FGICEDCGEEIALARIKANPTTRFCVSCQSRME 108


>UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          3655 RepID=A4NCL4_HAEIN
          Length = 78

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 39 CEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          C+ECG  IP+AR  A P  R C+ CQ   +    
Sbjct: 43 CDECGELIPKARLLAQPFARCCVDCQALLEKTNK 76


>UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W4E4_DESAS
          Length = 231

 Score = 41.3 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 19/88 (21%)

Query: 17  STIEDAIARARG-----EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD--- 68
           +  +DA+ + R      +         C+ CG  I  AR  A+P   LC  C++ ++   
Sbjct: 65  ALRDDAMLKIRAVEDALKNIEMGKYGICDICGKEIGYARLTALPRTTLCKECKEAQERIP 124

Query: 69  -----------LQKPAYTGYNRRGSKDS 85
                      LQ P    +N R S D+
Sbjct: 125 SRNIRPAEEDILQPPFERSFNDRVSDDA 152


>UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A882_GEMAT
          Length = 127

 Score = 41.3 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 22  AIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
            + +A   + +   +  +C +CG  I   R +A+P  R CI C+Q ++  K +
Sbjct: 75  HLDQALRRLYKAPATFGKCHQCGEDIAFERLDALPNARYCIACKQREEDAKKS 127


>UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TRY0_ALKMQ
          Length = 224

 Score = 41.3 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           E         I RA  +I  G +  EC+ CG  IP  R E +P   +C+ C
Sbjct: 68  ENHERYRVTEIDRALEKIQEG-TYGECQLCGQGIPDERLEVMPEANICMVC 117


>UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria
           RepID=DKSA_HAEIN
          Length = 145

 Score = 41.3 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I     ++   +    C+ CG  I   R EA P   LCI C+   ++++
Sbjct: 82  NRDRERKLMKKIEATLKKLDT-DDFGYCDCCGEEIGIRRLEARPTADLCIDCKTLAEIRE 140

Query: 72  PAYTG 76
               G
Sbjct: 141 KQVAG 145


>UniRef50_UPI0001B515E7 hypothetical protein SvirD4_35899 n=1 Tax=Streptomyces
           viridochromogenes DSM 40736 RepID=UPI0001B515E7
          Length = 118

 Score = 41.3 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
           E++   I+ A AR +       S   C+ C   IP  R E +P  R C+ CQ+ 
Sbjct: 68  ERVLKEIDAAFARVQDR-----SYGVCQGCSTRIPVERLEILPYTRFCVPCQRN 116


>UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57
          Length = 151

 Score = 40.9 bits (94), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I +   ++   E    CE CG  I   R EA P   LCI C+   ++++
Sbjct: 88  NRDRERKLIKKIEKTLKKV-EDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146

Query: 72  PAYTG 76
               G
Sbjct: 147 KQMAG 151


>UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=B8J371_DESDA
          Length = 120

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   I  A   I  G +   CE+CG  I   R +A P  RLCI+C+ +++ +     
Sbjct: 61  ERRLIRKIQAALTRIDDG-TYGICEDCGDDISIPRLKARPVTRLCINCKAKQE-EDEHLR 118

Query: 76  G 76
           G
Sbjct: 119 G 119


>UniRef50_A4XRJ7 Transcriptional regulator, TraR/DksA family n=8
           Tax=Pseudomonadaceae RepID=A4XRJ7_PSEMY
          Length = 103

 Score = 40.9 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           + +A   +  G S   C +CG PI +AR  AIP    C+ C   +
Sbjct: 60  VNQALARVADG-SYGLCLKCGEPISEARLNAIPAAEYCLGCASVR 103


>UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas
           arsenicoxydans RepID=A4G7K6_HERAR
          Length = 106

 Score = 40.9 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           DDA+ +     + D  A  R           C +CG  I  AR +A P  + C  CQ+  
Sbjct: 44  DDAMIKMELVELADIEAAHRR--IDNHQYGLCIDCGCTIDYARLQASPTAKRCTQCQRLH 101

Query: 68  DLQ 70
           + +
Sbjct: 102 EQR 104


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac...   105   5e-22
UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11...   103   2e-21
UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI...    91   9e-18
UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35...    90   3e-17
UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI            74   2e-12
UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass...    73   3e-12
UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu...    73   3e-12
UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ...    71   1e-11
UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop...    71   1e-11
UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ...    71   1e-11
UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co...    71   1e-11
UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot...    70   2e-11
UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ...    70   2e-11
UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ...    70   2e-11
UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=...    70   2e-11
UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob...    70   3e-11
UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ...    70   3e-11
UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ...    69   3e-11
UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ...    69   4e-11
UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ...    69   5e-11
UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass...    69   6e-11
UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a...    68   6e-11
UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc...    68   7e-11
UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom...    68   8e-11
UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob...    68   1e-10
UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B...    68   1e-10
UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro...    67   1e-10
UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ...    67   2e-10
UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ...    67   2e-10
UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB...    67   2e-10
UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba...    67   2e-10
UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri...    67   2e-10
UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14...    67   2e-10
UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ...    67   2e-10
UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID...    67   2e-10
UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ...    66   2e-10
UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4          66   2e-10
UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce...    66   3e-10
UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ...    66   4e-10
UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=...    66   4e-10
UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5...    66   4e-10
UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim...    66   4e-10
UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=...    66   4e-10
UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ...    66   5e-10
UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm...    66   5e-10
UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ...    66   5e-10
UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ...    65   5e-10
UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ...    65   6e-10
UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ...    65   6e-10
UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ...    65   1e-09
UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re...    64   1e-09
UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ...    64   1e-09
UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ...    64   1e-09
UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11...    64   1e-09
UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami...    64   2e-09
UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag...    64   2e-09
UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ...    64   2e-09
UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT...    64   2e-09
UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=...    63   2e-09
UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib...    63   2e-09
UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac...    63   2e-09
UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida...    63   3e-09
UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ...    63   3e-09
UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10...    63   3e-09
UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ...    63   3e-09
UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1...    63   3e-09
UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ...    63   4e-09
UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ...    63   4e-09
UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34...    63   4e-09
UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n...    63   4e-09
UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ...    62   4e-09
UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr...    62   4e-09
UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot...    62   4e-09
UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1...    62   4e-09
UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=...    62   5e-09
UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr...    62   5e-09
UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1...    62   5e-09
UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac...    62   5e-09
UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact...    62   6e-09
UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr...    62   6e-09
UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ...    62   7e-09
UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ...    62   7e-09
UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro...    62   7e-09
UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr...    61   8e-09
UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc...    61   8e-09
UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID...    61   8e-09
UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=...    61   9e-09
UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ...    61   9e-09
UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ...    61   1e-08
UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep...    61   1e-08
UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10...    61   1e-08
UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi...    61   1e-08
UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ...    61   1e-08
UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD                  61   1e-08
UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwell...    61   1e-08
UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens...    61   1e-08
UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ...    61   2e-08
UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3...    61   2e-08
UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ...    61   2e-08
UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ...    61   2e-08
UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8...    60   2e-08
UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term...    60   2e-08
UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ...    60   2e-08
UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm...    60   2e-08
UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ...    60   2e-08
UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6...    60   2e-08
UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14...    60   2e-08
UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono...    60   2e-08
UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ...    60   2e-08
UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 ...    60   3e-08
UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 ...    60   3e-08
UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD      60   3e-08
UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ...    60   3e-08
UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R...    60   3e-08
UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy...    60   3e-08
UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ...    60   3e-08
UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1...    60   3e-08
UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1...    59   4e-08
UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1...    59   4e-08
UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge...    59   4e-08
UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3...    59   4e-08
UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi...    59   4e-08
UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 ...    59   5e-08
UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel...    59   5e-08
UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ...    59   6e-08
UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ...    59   6e-08
UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ...    59   6e-08
UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ...    58   7e-08
UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ...    58   7e-08
UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa...    58   7e-08
UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12...    58   8e-08
UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ...    58   8e-08
UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R...    58   8e-08
UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 ...    58   8e-08
UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ...    58   9e-08
UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi...    58   9e-08
UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax...    58   1e-07
UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=...    58   1e-07
UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ...    57   1e-07
UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone...    57   1e-07
UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ...    57   2e-07
UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ...    57   2e-07
UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus ...    57   2e-07
UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4 ...    57   2e-07
UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1...    57   2e-07
UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete...    57   2e-07
UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1...    57   2e-07
UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto...    57   2e-07
UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto...    57   2e-07
UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax...    57   2e-07
UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell...    56   2e-07
UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium...    56   2e-07
UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro...    56   3e-07
UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID...    56   3e-07
UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro...    56   3e-07
UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD                   56   3e-07
UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbi...    56   3e-07
UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ...    56   4e-07
UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ...    56   4e-07
UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo...    56   4e-07
UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_...    56   4e-07
UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep...    55   6e-07
UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon...    55   9e-07
UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ...    55   9e-07
UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax...    55   9e-07
UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp...    53   2e-06
UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T...    53   2e-06
UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ...    53   2e-06
UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM...    53   2e-06
UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter...    53   3e-06
UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1...    53   3e-06
UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06

Sequences not found previously or not previously below threshold:

UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ...    71   1e-11
UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253...    67   2e-10
UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ...    65   9e-10
UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7...    63   4e-09
UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter...    62   7e-09
UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ...    61   1e-08
UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu...    60   2e-08
UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ...    60   2e-08
UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 ...    60   2e-08
UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther...    60   2e-08
UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte...    60   3e-08
UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5...    59   4e-08
UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ...    59   4e-08
UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ...    59   4e-08
UniRef50_B5JMU6 Putative uncharacterized protein n=1 Tax=Verruco...    59   4e-08
UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus ...    59   6e-08
UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact...    58   8e-08
UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo...    58   9e-08
UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 ...    58   9e-08
UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ...    58   1e-07
UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo...    58   1e-07
UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax...    58   1e-07
UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B...    58   1e-07
UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil...    58   1e-07
UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subt...    57   1e-07
UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ...    57   1e-07
UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ...    57   2e-07
UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria...    57   2e-07
UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br...    57   2e-07
UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 ...    57   2e-07
UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1...    56   2e-07
UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte...    56   2e-07
UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacte...    56   2e-07
UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2...    56   3e-07
UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6...    56   3e-07
UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ...    56   3e-07
UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ...    56   3e-07
UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri...    56   5e-07
UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 ...    56   5e-07
UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati...    56   5e-07
UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=...    56   5e-07
UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 ...    55   5e-07
UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ...    55   6e-07
UniRef50_B9XD69 Transcriptional regulator, TraR/DksA family n=1 ...    55   6e-07
UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 ...    55   6e-07
UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana...    55   6e-07
UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13...    55   7e-07
UniRef50_C5RLG0 Transcriptional regulator, TraR/DksA family n=1 ...    55   9e-07
UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress...    55   9e-07
UniRef50_Q30RD2 Transcriptional regulators, TraR/DksA family n=3...    55   1e-06
UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum ...    55   1e-06
UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ...    55   1e-06
UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1...    55   1e-06
UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68...    55   1e-06
UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbac...    54   1e-06
UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 ...    54   1e-06
UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2 ...    54   1e-06
UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID...    54   1e-06
UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ...    54   2e-06
UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 ...    54   2e-06
UniRef50_UPI0001C4239D hypothetical protein BpOF4_09730 n=1 Tax=...    54   2e-06
UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ...    53   2e-06
UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Strepto...    53   2e-06
UniRef50_D1ACI4 Transcriptional regulator, TraR/DksA family n=2 ...    53   2e-06
UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum...    53   3e-06
UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro...    53   3e-06
UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 ...    53   3e-06
UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9...    53   4e-06
UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ...    53   4e-06
UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ...    53   4e-06
UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35...    53   4e-06
UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1...    53   4e-06
UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1...    52   4e-06

>UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria
          RepID=YBII_ECOLI
          Length = 88

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC
Sbjct: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          IHCQQEKDLQKPAYTGYNRRGSKDSQLR
Sbjct: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88


>UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11
          Tax=Proteobacteria RepID=A4XQ42_PSEMY
          Length = 88

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/88 (75%), Positives = 76/88 (86%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWANDDAV EQI+S+IEDAIARAR ++P+GESL  CEEC A IP+ARR+AIPGVRLC
Sbjct: 1  MASGWANDDAVQEQIDSSIEDAIARARSQLPKGESLRHCEECDAVIPEARRQAIPGVRLC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ E D +  AY+GYNRRGSKDSQLR
Sbjct: 61 VKCQAEHDRENAAYSGYNRRGSKDSQLR 88


>UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM
          Length = 89

 Score = 91.1 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLD-ECEECGAPIPQARREAIPGVRL 59
          MA+G+  D  V EQI++T+ DAI RAR  +    +    C ECG  IP+ARR  IPGV L
Sbjct: 1  MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60

Query: 60 CIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          C+ CQ ++D ++ A++ YNRR SKDSQLR
Sbjct: 61 CVECQAKEDAREKAFSAYNRRASKDSQLR 89


>UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35
          Tax=Proteobacteria RepID=A1B365_PARDP
          Length = 91

 Score = 89.6 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGE---SLDECEECGAPIPQARREAIPGV 57
          MA GWA DDAVNEQI  + ++AI R R    +     S   CEEC  PIP+ARR AIPGV
Sbjct: 1  MAGGWARDDAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGV 60

Query: 58 RLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          RLC+ CQ  +D       G NRRGSKDSQL+
Sbjct: 61 RLCVDCQSGRDRAWRPSAGINRRGSKDSQLK 91


>UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI
          Length = 73

 Score = 73.8 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59
          M+       +V EQ+  T    I R R +I   G  +  CE CG PIP+ARR+  PGV L
Sbjct: 1  MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57

Query: 60 CIHCQQEKDLQKPAYT 75
          C+ CQ  ++ Q+  Y 
Sbjct: 58 CVECQAYQERQRKHYA 73


>UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=Q6U9H2_9CAUD
          Length = 84

 Score = 73.0 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA G+  ++ ++  IN+ +++A+   R    +G++ + CEEC  PIP+ARR AI     C
Sbjct: 1  MAVGFGPENGLHMTINAGLDNALDFIRSTQYKGDTPEFCEECDEPIPEARRMAISTA-YC 59

Query: 61 IHCQQEKD 68
          + CQ   D
Sbjct: 60 VQCQTVHD 67


>UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4
           RepID=B3DUR8_METI4
          Length = 249

 Score = 72.6 bits (177), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 2   ASGWANDDAVNEQINS-----TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  D A++           I+D++ R         +   C+ CG PIP  R +AIP 
Sbjct: 143 TDVYDRDFALSLLSQENDSLIEIDDSLKRIEDN-----TYGICQMCGKPIPIIRLQAIPY 197

Query: 57  VRLCIHCQQEKDLQKPAYTGYNR 79
            R  + CQ++ + +K        
Sbjct: 198 ARFTVDCQRQLEKEKMYQLRKRW 220


>UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp.
          M18 RepID=C6MQY5_9DELT
          Length = 74

 Score = 71.1 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA      D   E     +E A+A      P  ESL  CEECG PIP+ RR+A PG   C
Sbjct: 1  MADEI---DLAQEISERHLEAALAGHLDHKPAAESLTHCEECGRPIPEGRRQAQPGCTRC 57

Query: 61 IHCQQEKD 68
          + CQ   +
Sbjct: 58 VRCQSGIE 65


>UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia
           RepID=B4D0A5_9BACT
          Length = 233

 Score = 71.1 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 2   ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
           +  +  D A+      +     IE+A+ R         +   CE  G PI   R EA+P 
Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRI-----ELGTYGVCEMSGKPIAHPRLEALPF 184

Query: 57  VRLCIHCQQEKDLQKP 72
            R  + CQ + + Q  
Sbjct: 185 ARYTVECQSQIEKQGK 200


>UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM
           3645 RepID=A3ZQT2_9PLAN
          Length = 134

 Score = 71.1 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIPR------GESLDECEECGAPIPQARREAIPGVRLCIH 62
           D+  ++++S + +  +R   +I +      G S  ECE C   IP AR +A+P   LCI 
Sbjct: 50  DSAQDELSSQLAEVESRELAQIDKALERIRGGSFGECEGCTCKIPTARLQALPYATLCIK 109

Query: 63  CQQEKDLQKPAYTGYNRRGSKDSQL 87
           CQ+E +  +    G + R + + Q+
Sbjct: 110 CQRELE--ELGEDGVSWRQNSEDQV 132


>UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4
          Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ
          Length = 74

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D V +++    E  I +AR       S   CE C  PIP+ARR A+PGV LC+ CQ+
Sbjct: 3  DVMDLVQQRVEEERERHIHKARSRQA-APSRFLCESCNGPIPEARRAALPGVELCVTCQE 61

Query: 66 EKDLQKPAYTG 76
           K+L+   Y G
Sbjct: 62 IKELKSLHYKG 72


>UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved
          hypothetical phage protein) n=1 Tax=Yersinia
          enterocolitica subsp. enterocolitica 8081
          RepID=A1JNK3_YERE8
          Length = 74

 Score = 70.7 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E+    +   IA+AR +     S   C  C A IP+ RR  +PGV  C+ CQQ
Sbjct: 3  DLMDIAQERQEMLLAMQIAKARSKPITA-SAFICASCEAEIPEQRRITVPGVIFCVACQQ 61

Query: 66 EKDLQKPAYTGY 77
            + +K  Y G 
Sbjct: 62 LHEEKKKHYRGI 73


>UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family
          n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3
          Length = 69

 Score = 70.3 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I ++R +     SL  C  CG PIP+ RR+ +PG+  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQSRFKPGSAPSLFHCRVCGKPIPEKRRQTLPGITTC 57

Query: 61 IHCQQEKDLQK 71
            CQ++ +   
Sbjct: 58 KECQEKLERHS 68


>UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4
          Tax=Enterobacteriaceae RepID=D2BWU8_DICD5
          Length = 69

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M      D   NEQ    +E+ I + R +     SL  C  CG PIP+ RR+ +PGV  C
Sbjct: 1  MPDEIDRDQEFNEQ---RLEEMIEQNRFKPATTPSLHYCRLCGEPIPEKRRQTLPGVTTC 57

Query: 61 IHCQQEKDLQKP 72
            CQ   + ++ 
Sbjct: 58 TECQAIIERRQR 69


>UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium
           Ellin514 RepID=B9XR79_9BACT
          Length = 192

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 2   ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  D A+     ++     IE+A+ R         +   CE  G PIP+AR EAIP 
Sbjct: 87  TDNFDRDFALSLLSSDQDAIYEIEEALKRI-----EKNTYGVCELTGKPIPKARLEAIPW 141

Query: 57  VRLCIHCQQEKDLQK 71
            R  +  Q + + + 
Sbjct: 142 TRFTVQAQAQLEKEG 156


>UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3
           Tax=Propionibacterium acnes RepID=D1YA14_PROAC
          Length = 159

 Score = 69.9 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           +S +  D  ++   N+      ++   ++    +   CE CG PI +AR +A P   +C+
Sbjct: 91  SSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFPRATMCV 150

Query: 62  HCQQEKDLQ 70
            C+Q ++ +
Sbjct: 151 KCKQRQERR 159


>UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67Q17_SYMTH
          Length = 269

 Score = 69.9 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
             + D  +   +   I++ I  A   + +G +   CEECG PI   R +A P    CI C
Sbjct: 56  ERSKDLGLRSHMLRRIQE-IESALQRMDQG-TYGICEECGRPIDPERLKAFPSATTCITC 113

Query: 64  QQEKDLQKPAYTG 76
           QQ ++ +   +  
Sbjct: 114 QQRREARPDRFVR 126


>UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root
          RepID=CP80_BP186
          Length = 75

 Score = 69.9 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D    +     E  I+ AR       S   CEEC APIP+ARR AIPGV+ C+ CQ+
Sbjct: 3  DAMDLAQLREQEDRERHISNARSRRHE-VSAFICEECDAPIPEARRRAIPGVQCCVTCQE 61

Query: 66 EKDLQKPAYTG 76
            +L+   Y G
Sbjct: 62 ILELKSKHYNG 72


>UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2
          Tax=Chromobacterium group RepID=B9Z318_9NEIS
          Length = 68

 Score = 69.2 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 34/67 (50%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E      E AIA AR  + RG S  ECE+CG PIP AR+ A PG   C+ CQ 
Sbjct: 2  DPFDRAQELEMEQREAAIAAARDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQN 61

Query: 66 EKDLQKP 72
           ++  + 
Sbjct: 62 RRERPRR 68


>UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE
          Length = 143

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 1   MASGWANDDAVNEQINSTIEDAIA--------RARGEIPRGESLDECEECGAPIPQARRE 52
           +A          E+  +     +          A   I  G +   C EC   IP  R +
Sbjct: 53  VADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEG-TYGVCSECDNEIPGKRLK 111

Query: 53  AIPGVRLCIHCQQEKDLQK 71
           A+P    C+ CQ   D ++
Sbjct: 112 AVPWTPYCLDCQDSADRRR 130


>UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4
          Length = 242

 Score = 68.8 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+NE     +++ I  A   I  G S  +CE CG  IP  R EAIP  R CI  
Sbjct: 60  EREKDIALNEHSEQLLDE-IDNALKAIEEG-SYGKCEVCGTDIPYERLEAIPNARRCIQH 117

Query: 64  QQEKDLQKPA 73
            +EK +    
Sbjct: 118 AEEKSVSNKR 127


>UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like
          viruses RepID=A8R990_9CAUD
          Length = 85

 Score = 68.8 bits (167), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRL 59
          MA G+A D A   ++ + ++ AI  AR ++    ES   C +C   IP+ARR+AI GV  
Sbjct: 1  MAVGFAKDGAEQLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIY 60

Query: 60 CIHCQQEKDLQKPAYTGYNRRGS 82
          CI CQ   D             S
Sbjct: 61 CIGCQSMHDEIFKREPRNCWHRS 83


>UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155
           RepID=A6DK24_9BACT
          Length = 147

 Score = 68.4 bits (166), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           +  +  +  +N   +  I+  + +   E         C +C   IP+AR +AIP  +LC+
Sbjct: 63  SDNFMREINLNVMSDEGIKVQLVQQAIERLDEGKYGRCVDCRDDIPEARLDAIPYAKLCV 122

Query: 62  HCQQEKDLQK 71
            C++ ++ Q 
Sbjct: 123 ACKETRESQG 132


>UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales
           RepID=A1SL71_NOCSJ
          Length = 283

 Score = 68.4 bits (166), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 2   ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A+ +  D  +            I RA   I  G +   CE CG PI + R  A P   LC
Sbjct: 215 ATSFERDHELTVLNSERDKLAQIERALARIDDG-TYGVCESCGNPIGKMRLMAFPRATLC 273

Query: 61  IHCQQEKDLQ 70
           + C+Q ++ +
Sbjct: 274 MTCKQREERR 283


>UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D3H2_PELTS
          Length = 242

 Score = 68.4 bits (166), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 5   WANDDAVNEQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +        + N+ +   AI RA  +I  G +  +C+ CG  IP  R EA+P    C  C
Sbjct: 63  FERSKDFALRENAMLAVAAIDRALAKIENG-TYGKCDNCGREIPLERLEAVPSTVCCKKC 121

Query: 64  QQEKDLQKPAYTG 76
           ++ ++        
Sbjct: 122 KEAEEKNTRPEAR 134


>UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC
          35316 RepID=UPI0001827371
          Length = 73

 Score = 67.6 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA      D    +     E  I  AR       S   CEEC APIP+ARR A+PGV LC
Sbjct: 1  MADFI---DLAQAREQEDRERHIHHARRRPAS-PSRFLCEECDAPIPEARRMAVPGVALC 56

Query: 61 IHCQQEKDLQKPAYTG 76
          I CQ+  +++     G
Sbjct: 57 ITCQEIAEMKNKHVRG 72


>UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH
          Length = 73

 Score = 67.6 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 7  NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
            D   EQ    ++  I +A      G S  ECE+CG  IP+ RR A+ G   C  CQ  
Sbjct: 4  EMDLACEQSQLLLDKQI-KAVTGRYIGVSAFECEDCGREIPEKRRIAVMGCTRCADCQTV 62

Query: 67 KDLQKPAYTGY 77
           +L+   Y   
Sbjct: 63 YELKSKHYRSV 73


>UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR
          family n=8 Tax=root RepID=B8F4E6_HAEPS
          Length = 72

 Score = 67.2 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D  NE      E A+A+ R + P   SL  CE+C  PIP+ARR+ + G   CI CQQ
Sbjct: 3  DQIDRANELAEKEREFALAKLRNK-PTACSLIHCEDCDEPIPEARRQNVQGCTRCIDCQQ 61

Query: 66 EKDLQKPAYT 75
            + ++  Y 
Sbjct: 62 IYEYKQKGYR 71


>UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD
          Length = 213

 Score = 67.2 bits (163), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 18/87 (20%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +E+  + +EDA++R R       +  +CE CG PIP  R EAIP  R C+ C++E + ++
Sbjct: 68  DERALADVEDALSRIRQ-----GTYGQCESCGRPIPPDRLEAIPTTRRCVDCEREVEARQ 122

Query: 72  -------------PAYTGYNRRGSKDS 85
                        PA+  ++R G+ ++
Sbjct: 123 ASARRPVEEDVLAPAFGQFDRDGADET 149


>UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM
          Length = 234

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+ E   +T+  AI  A  ++  G     CE C   I Q R EAIP    CI C
Sbjct: 60  ERGKDFALREDAITTL-GAIDDALDKMEEGM-YGICEVCHQEISQDRLEAIPYTTQCIDC 117

Query: 64  QQEKDLQKPAYTGYNRRGSKDSQLR 88
           +   +    ++     R +++  L+
Sbjct: 118 KSRDEHLPKSHE----RSAEEDVLK 138


>UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GH83_9ACTO
          Length = 232

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
               +   RA   +  G +   CE CG PI +AR +A P   LC+ C+Q+ + +
Sbjct: 180 RERLEQTERALLRMDAG-TYGVCENCGKPIGKARMQAFPHAILCVDCKQKSERR 232


>UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF
          Length = 124

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 2   ASGWANDDAVNEQI-NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
              +    ++        +   I RA  +I    S   C+  G  IP AR  AIP   + 
Sbjct: 51  TDTFDRTISLEVTTKEYELLRQINRALEKIEES-SYGICDVSGEEIPLARLMAIPYATMT 109

Query: 61  IHCQQEKDL 69
           +  Q + + 
Sbjct: 110 VKAQSQFEK 118


>UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium
           modesticaldum Ice1 RepID=B0TGP7_HELMI
          Length = 238

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A  ++ +  +++ IA+A+  I  G     CE C   IP AR  A+P   LCI C
Sbjct: 58  ERGKDLATRDRFSRELDE-IAKAKRRISEGI-YGICERCHQKIPDARMAAMPTATLCIEC 115

Query: 64  QQEKD--LQKPAYTGYNRRGS 82
           Q  ++               +
Sbjct: 116 QSHEEELHPDRHPRPIEEDAA 136


>UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae
          RepID=Q3ZL39_ESCBL
          Length = 76

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRL 59
          M   +      ++      E  + +    +     S   C +C  PIP AR +A+P    
Sbjct: 1  MTKAFDR---ASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVT 57

Query: 60 CIHCQQEKDLQKPA 73
          C+ CQ  ++ ++  
Sbjct: 58 CVTCQAIREHRRKH 71


>UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14
          Tax=Proteobacteria RepID=B3QCL2_RHOPT
          Length = 73

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 4  GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D          +D IARA G+I +G     C  CG PI +ARR+A+P    C+ C
Sbjct: 1  MTDQLDEAQALEERERDDCIARAAGQI-KGHGATHCVVCGEPIDEARRKAMPSATRCVDC 59

Query: 64 QQEKDLQKPAYTG 76
          Q+ ++    ++ G
Sbjct: 60 QESRERWSRSHRG 72


>UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R7U4_AMMDK
          Length = 176

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
             A D A+ E     ++  I  A   +  G +   CE CGAPIP+ R EA+P   LC  C
Sbjct: 35  ERAKDLALREDALLKLQ-VIEDALRRLEEG-TYGYCESCGAPIPRERLEAVPYTTLCHAC 92

Query: 64  QQEKDLQK 71
           ++ ++ + 
Sbjct: 93  KERQEAKG 100


>UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE
          Length = 74

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA       +    + +     I R R ++  G S   C++CGAP+P  RR  IPGVR C
Sbjct: 1  MADEIERFQSHQAMLEADR---IQRIRQQL-TGISALFCDDCGAPVPAERRRLIPGVRKC 56

Query: 61 IHCQQEKDLQKPAYTGYN 78
          + CQ+ +++Q   Y  + 
Sbjct: 57 VGCQEVQEIQARHYRRWQ 74


>UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia
           RepID=A4XKS6_CALS8
          Length = 209

 Score = 66.5 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRR 80
           + I +A  +I +G +   C  C   IP  R  AIP    CI CQ++ + ++      ++R
Sbjct: 75  ELIEKALSKIEKG-NFGYCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRENY--QTDQR 131

Query: 81  GSKDSQL 87
             ++  +
Sbjct: 132 PIEEKVM 138


>UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4
          Length = 69

 Score = 66.5 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGE-IPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
           + D  N+     +   +AR  G+   +G SL  CEEC  PIP+ARR  +PGVRLC+ CQ
Sbjct: 2  DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61

Query: 65 QEKDLQKP 72
             +    
Sbjct: 62 TRIEQLAR 69


>UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces
           RepID=Q9S2X6_STRCO
          Length = 239

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             +     RA   +  G +   CE CG PI +AR +A P   LC+ C+Q+++ +
Sbjct: 186 REVLSQTERALDRLDAG-TYGLCENCGNPIGKARMQAFPRATLCVECKQKQERR 238


>UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfonatronospira thiodismutans ASO3-1
           RepID=C0GTL3_9DELT
          Length = 243

 Score = 66.1 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           M + + + +A++ Q  S + + I  A   +  G +   C+ CG  I +AR +A+P  R C
Sbjct: 48  MDNMYRSINALDSQARSEL-NHIDHALDRMIIG-NYGICDSCGQEISEARLQAVPWARYC 105

Query: 61  IHCQQEKDLQ 70
             C  + + +
Sbjct: 106 RVCVNKAEEK 115


>UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9
          Length = 127

 Score = 66.1 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 5   WANDDAVNEQINSTIEDA----IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           + N D  N +  S++E      I +A   I +  +   C  C   I + R  AIP   LC
Sbjct: 54  FDNMDGNNLEALSSVEKKKLHLINQALYRISQ-NTYGNCLACDKSITRERLVAIPYAFLC 112

Query: 61  IHCQQEKDLQKPA 73
           I CQ +K+ +   
Sbjct: 113 ISCQTKKEKKGKR 125


>UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium
           RepID=A3DD29_CLOTH
          Length = 212

 Score = 66.1 bits (160), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              + + I  A  ++ +G S  +CE CG  I + R EA+P  RLCI C+  K+
Sbjct: 70  EERLLEDINEALTKMDKG-SFGKCELCGKEIDEERLEALPYTRLCIDCENAKE 121


>UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776
           RepID=C1ZKC1_PLALI
          Length = 152

 Score = 65.7 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
           + +     I RA   I  G     C++C   IP AR +A+P   +C+ CQ+ ++      
Sbjct: 61  LETRELMQINRALALIEEGH-YGVCQKCSKAIPLARLQAVPFTTVCVECQRRQEDLGDND 119

Query: 75  T---GYNRRGSKDSQLR 88
                 + R + D + R
Sbjct: 120 EDAYSVDWRKAYDHERR 136


>UniRef50_Q0BZ89 C4-type zinc finger protein, DksA/TraR family n=2
          Tax=Proteobacteria RepID=Q0BZ89_HYPNA
          Length = 87

 Score = 65.7 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MASGWA + +V +QI  ++ DA+A AR  +P G  L+ECEECG  IP ARR A+ G R C
Sbjct: 1  MASGWAPEGSVQDQIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTC 60

Query: 61 IHCQQEKDLQKPAYTGYNRRGSKDSQLR 88
          + CQ  ++ Q   ++  NRRG+KDSQLR
Sbjct: 61 VSCQSVREKQPK-FSSINRRGNKDSQLR 87


>UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2
           Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD
          Length = 222

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
             + D A++++++  I+ AI  A      G+    CE C   IP  R EA+P   +C  C
Sbjct: 55  ERSRDVAIHDRLHHRIQ-AIDSALQRYEEGK-YGLCEHCQKEIPLGRLEALPFTTVCTEC 112

Query: 64  QQEKDLQKPAYTGYNRRGSKDSQL 87
            + +++++      +R   ++  L
Sbjct: 113 SRLEEMEEQH--SLHRDSVEEEIL 134


>UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM
          2246 RepID=UPI00016C4B65
          Length = 95

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL---Q 70
          ++ +     I RA   + +  +  +CE C   IP AR  A+P    C+ CQ+E +     
Sbjct: 3  ELEAKELAQIERALRRL-KAGTYGKCEVCSIKIPVARLNALPFSTFCVDCQREMERDGGW 61

Query: 71 KPAYTGYNRRGSKD 84
             Y         D
Sbjct: 62 SADYGANGWDRITD 75


>UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R2J7_9PLAN
          Length = 148

 Score = 65.7 bits (159), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59
           A  D   ++INS + +  +R    I          +   CE C  PIP  R +A+P   +
Sbjct: 46  AAMDTAQDEINSQLAEVESRELAHIDTALERMRSGNYGACEGCNEPIPLLRLQALPYAVM 105

Query: 60  CIHCQQEKDL 69
           CI CQ+E + 
Sbjct: 106 CIKCQREAEK 115


>UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus
           RepID=A5UPY9_ROSS1
          Length = 121

 Score = 65.3 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D         + + +  A   +  G +   C +CG PIP  R EA+P   LC+ CQ  ++
Sbjct: 58  DLALRSNARELLEQVNAALRRLDEG-TYGICADCGEPIPIERLEALPYATLCVRCQSTRE 116

Query: 69  LQKP 72
             + 
Sbjct: 117 RARR 120


>UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6I0P9_9BACT
          Length = 136

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
                 D    ++ + ++ ++ +A   +  G S   CE+CG  I + R  A+P  +LCI 
Sbjct: 55  DMGEGVDLALLEMRNRMKRSVDQALLRLEEG-SYGNCEDCGGEIEEKRLMAMPFAQLCIK 113

Query: 63  CQQEKDLQKPAYTGYNRRGSKD 84
           CQ++K+  +        R  ++
Sbjct: 114 CQRKKEELEKIEREDPLRDGEE 135


>UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM
          Length = 203

 Score = 65.3 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           N+ +   +E+A+ +   +I        CE CG PIP+ R +A+P    C+ C+++ +
Sbjct: 69  NQMVLDKVEEALEKLDNDI-----YGMCENCGKPIPEERLDALPYAEFCVQCKKKSE 120


>UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter
           RepID=B3EAN1_GEOLS
          Length = 218

 Score = 64.5 bits (156), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
                 +I  A   I  GE    CEEC   IP  R + +P  R C+ C+ + +  +    
Sbjct: 141 EREKLHSIDEALLRIAEGE-YGICEECDEDIPMGRLKVLPFTRHCVKCKSDLEKFQAQTR 199

Query: 76  GYNRRGSK 83
                 + 
Sbjct: 200 RIEEDRAY 207


>UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora
           curvata DSM 43183 RepID=D1AEE3_THECD
          Length = 114

 Score = 64.5 bits (156), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 2   ASGWANDDAV--NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
           +     DD             + I  A   + +G     CE+CG PIP+ R E +P  R 
Sbjct: 44  SDDGQPDDTALVQADALRQTLEDIEEALLRLRQG-RYGLCEKCGKPIPEGRLEILPYARC 102

Query: 60  CIHCQQEK 67
           C+ CQQ +
Sbjct: 103 CVSCQQRR 110


>UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM
          Length = 137

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 2   ASGWANDDAV-NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A+ +  DD + + Q  +++   I  A   + +G     CEE G  I   R +  P  R C
Sbjct: 54  ANSYEADDIIMSAQKRNSLLSEIDEALERMEQGV-YGYCEETGDEIGFGRLDLEPTARYC 112

Query: 61  IHCQQEKDLQKPAYTGYNRRGSKD 84
           +  Q+  D +           S++
Sbjct: 113 VDVQERLDKKNRFLRSPGSVNSEE 136


>UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia
          proteamaculans 568 RepID=A8GA41_SERP5
          Length = 73

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E+    +E  IA AR  + +  S   C +C   IP+ RR AIPGV  C+ CQ+
Sbjct: 3  DTIDMAQERQALMLEKQIAHARPVVTQA-SAQFCADCDGEIPEVRRRAIPGVSRCVACQE 61

Query: 66 EKDLQKPAY 74
            + Q+  +
Sbjct: 62 VSEAQQRHF 70


>UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7QCE7_CATAD
          Length = 275

 Score = 63.8 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             +     RA   +   ++   CE CG P+ + R +A P   LC+ C+Q+++ +
Sbjct: 223 REMLQQTERALARLA-ADTYGVCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275


>UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas
           RepID=A5W685_PSEP1
          Length = 154

 Score = 63.8 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           ++++   +E A+ R        ES   C++ G PI   R    P  + CI  Q+  +   
Sbjct: 94  DQRLLPQLEMALDRIAD-----ESFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQLD 148

Query: 72  PAYTGY 77
                 
Sbjct: 149 RHQRQV 154


>UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788757
          Length = 187

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+ E +   +E  I  A   + +GE    C ECG  IP  R EA+P    C+  
Sbjct: 62  ERGRDLAIQETLERELE-QIDAALQRMDQGE-YGTCAECGREIPYERLEALPYTAYCLEH 119

Query: 64  QQEKDL 69
              KD+
Sbjct: 120 TPRKDI 125


>UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882
          RepID=A2I309_9CAUD
          Length = 73

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
             D   + I   +  ++A  +  I P   S   C++C + IP+ARR ++PGVRLC+ C 
Sbjct: 3  DIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVDCA 62

Query: 65 QEKDLQKPAYT 75
            ++++     
Sbjct: 63 SLQEIKGRHQR 73


>UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales
           RepID=C1DXT7_SULAA
          Length = 144

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           Q +      I  A  +I  G     CEECGA I + R EAIP VRLCI C Q +++    
Sbjct: 56  QADRETLYLIDLALRKIDSGI-YGICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI---- 110

Query: 74  YTGYNRRGSKD 84
              + +R  ++
Sbjct: 111 VRQFQQRNEEE 121


>UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis
           ortholog n=1 Tax=Clostridium acetobutylicum
           RepID=Q97H97_CLOAB
          Length = 200

 Score = 63.8 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              + + I  A  ++  G     CE CG PI + R E +P    C+ CQ + +   P   
Sbjct: 70  EEALLNKIGNAIDKVEHGG-YGICEVCGKPISEERLEFVPYAENCVECQNKLNDSMPREK 128

Query: 76  GYNRRGSKDSQL 87
             N R  ++  L
Sbjct: 129 --NDRPPEEDVL 138


>UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas
          syringae RepID=A9QS46_PSESX
          Length = 68

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA          EQ    ++ A+ + R       S   CE+C  PIP+ RR AI G   C
Sbjct: 1  MADDIDR---ATEQAQYLLDVALFKHRRIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETC 57

Query: 61 IHCQQEKDLQK 71
          IHCQ  ++ ++
Sbjct: 58 IHCQSLREQRR 68


>UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii
           DSM 11347 RepID=B5YGE3_THEYD
          Length = 129

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
               +  I   I  A  ++  G +   CE CG  IP+ R + +P    C  CQ++ ++ +
Sbjct: 64  QLSTHRDILKKIEEALRKLEEG-TYGICEMCGDEIPEERLKILPFAIYCRDCQEKIEMIE 122

Query: 72  P 72
            
Sbjct: 123 K 123


>UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8ESP2_OCEIH
          Length = 224

 Score = 63.4 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+ E     +ED I  A   I  G +   C  CG  IP  R EAIP    C+  
Sbjct: 60  EREKDIALQEHTEKELED-INAALHAIEEG-TYGICTVCGEDIPHERLEAIPTTDRCVKH 117

Query: 64  QQE--KDLQKPAYTG 76
             E  ++  +P    
Sbjct: 118 ANEGGRERYRPTEEQ 132


>UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VG86_9BACT
          Length = 148

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +        +  A   I  G +   CE CG  I + R E IP    C+ C+++ + +K  
Sbjct: 87  ESEREKIRQLNEALQRISDG-TYGICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKRR 145

Query: 74  YTG 76
              
Sbjct: 146 QKR 148


>UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis
           vadensis ATCC BAA-548 RepID=D1N407_9BACT
          Length = 133

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
            +   IEDAI R            +C+ECG PI + R    P    C+ C++  + Q   
Sbjct: 76  DVLRLIEDAIKRLVD-----GEYGKCQECGEPISEGRLAIRPYAVYCVKCKEMHEKQGWH 130


>UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10
           Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX
          Length = 206

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              I   I  A   +  G +   C  C  PI + R EA+P   LC  C +  DL+     
Sbjct: 72  EKYILRQIEDAFKRMEIG-TYGICAHCHKPIEEERLEALPYTVLCAECAKNNDLELKDLK 130

Query: 76  GYNRRGSKDSQLR 88
             N R +++  ++
Sbjct: 131 --NSRPNEERMIK 141


>UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7
           Tax=Cystobacterineae RepID=A7H9X1_ANADF
          Length = 120

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   I +A   I  G +   CE C   I   R EA P   LCI C++E++ ++ ++ 
Sbjct: 62  EKFLLAKIDKALARIENG-TFGICERCEEEISVKRLEARPVTTLCIRCKEEQEQKEKSFG 120


>UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F3S7_ACIC5
          Length = 139

 Score = 63.0 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 1   MASGWANDDAVNEQINSTI----------EDAIARARGEIPRGESLDECEECGAPIPQAR 50
           M +     D         +          + ++ R   E     S  EC ECG  I   R
Sbjct: 51  MENRIDPADQAVMSYQQELIFSQGTNKHTQLSLVRLALERLEDGSYGECAECGEDISPRR 110

Query: 51  REAIPGVRLCIHCQQEKD 68
            EA+P    CI CQ++ +
Sbjct: 111 LEAVPWTPYCISCQEKVE 128


>UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE
          Length = 136

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           A    ++ +V+ +    ++DA+ R         S  +C  CG PI  AR EAIP    C 
Sbjct: 64  ADEGLHNSSVDSETLQQVDDALRRI-----EQGSYGKCVICGKPIEPARLEAIPWTPYCK 118

Query: 62  HCQQEKD 68
             Q+  +
Sbjct: 119 ADQERLE 125


>UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L3E3_9DELT
          Length = 131

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           + +  +   I  A   +  G+    C+ECG  I  AR  A P   LC+HC+   +     
Sbjct: 59  ERDRQLIGEINEALARVKDGD-YGICQECGEEIGLARLRAQPTATLCVHCKSMLEEMGRP 117

Query: 74  Y 74
           Y
Sbjct: 118 Y 118


>UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7
          Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8
          Length = 71

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M   +       +      E A+ + R    +  S   CE+C APIP+ RR+ I GV  C
Sbjct: 1  MTDQFDR---AQQLEEMQREIALKKHR--TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRC 55

Query: 61 IHCQQEKDLQKPAYT 75
          + CQQ  ++Q+  + 
Sbjct: 56 VTCQQRFEIQQRNFR 70


>UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7
           Tax=Actinomycetales RepID=A0LTP3_ACIC1
          Length = 527

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             +      A   I  G +   CE CG PI + R +A P   LC+ C+Q ++ +
Sbjct: 475 RDLLVQTEHALARIADG-TYGRCENCGNPINKLRLQANPRATLCVSCKQREERR 527


>UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2
           Tax=Betaproteobacteria RepID=A1K6D2_AZOSB
          Length = 135

 Score = 62.6 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
            +++    +    + D I  AR  I  GE    C +CG  IP AR EA P    C+ CQ 
Sbjct: 60  EHENLAVVRDVRELRD-IEAARERIAEGE-AGICVDCGEEIPFARLEAQPTATRCVRCQS 117

Query: 66  EKDL 69
             + 
Sbjct: 118 LYER 121


>UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens
          subsp. laumondii RepID=Q7N7S5_PHOLL
          Length = 83

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRG-ESLDECEECGAPIPQARREAIPGVRL 59
          M+     D          +E+ IA  R E+  G  SL  CE CG  I + RR+ +PGV+L
Sbjct: 1  MSDDID-DTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQL 59

Query: 60 CIHCQQEKDLQK 71
          C+ CQ+  +  +
Sbjct: 60 CVGCQEVAEHWE 71


>UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1
          Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM
          Length = 73

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGE-----SLDECEECGAPIPQARREAIPGVRLC 60
             D   +Q  +  + AIA    +              C +CG  IP  R +A+P V  C
Sbjct: 2  DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61

Query: 61 IHCQQEKDL 69
          + CQ +K+ 
Sbjct: 62 VSCQDKKER 70


>UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1
           Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT
          Length = 116

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            +Q    IE+A+ R         S   CE C  PI + R +  P  + CI C++  + ++
Sbjct: 61  QKQELKEIEEALKRI-----EEGSYGICEMCDEPIQEERLKIKPYAKYCIICREIIEKEE 115

Query: 72  P 72
            
Sbjct: 116 K 116


>UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20
           RepID=Q30V43_DESDG
          Length = 149

 Score = 62.2 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D       +    A+  A   I  G     CEECG  I +AR +A P   LCIHCQ++++
Sbjct: 76  DVALRGRLARQLAAVESALHRIATGG-FGRCEECGDEIGEARLKANPTTTLCIHCQEDRE 134

Query: 69  LQKPA 73
            +   
Sbjct: 135 AEAAR 139


>UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas
          putida KT2440 RepID=Q88IG2_PSEPK
          Length = 72

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D  N++    ++  ++ AR   P  ESL++C  CG  IP+ RR A+ G + CI CQ 
Sbjct: 3  DIADLANDRAQWHLDLVLS-ARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQG 61

Query: 66 EKDLQKPAYTG 76
            + +   Y G
Sbjct: 62 FFEKKGARYAG 72


>UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268
           RepID=C8PIH5_9PROT
          Length = 118

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            ++    IE A+ R         +   CE CG  I   R +  P  RLCI C+++ + Q 
Sbjct: 62  QQKAFLEIESALKRI-----ENGTYGLCESCGEQISLERLKVNPEARLCISCKEQAEKQN 116

Query: 72  PA 73
            +
Sbjct: 117 RS 118


>UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella
           thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA
          Length = 251

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+ + +   +   I  A   I  G +   C  CG  IP+ R EAIP   LC+ C
Sbjct: 59  ERGKDLALRDNVQVQLRK-IEDALQSIAEG-TYGYCRRCGREIPRERLEAIPETTLCLEC 116

Query: 64  QQEKDLQKPAYTG 76
           +++ + +   ++ 
Sbjct: 117 RRKMEGKADKHSR 129


>UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae
           RepID=Y250_AQUAE
          Length = 145

 Score = 62.2 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
            N   V       I+ A+ +         +   CE CG  IP+ R  AIP  R C  C +
Sbjct: 58  DNLSNVEIATLREIDYALEKI-----EKGTYGICERCGEEIPEPRLCAIPWTRYCAKCAE 112

Query: 66  EKDLQKPAY 74
           E + +   Y
Sbjct: 113 EVERESGTY 121


>UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria
           RepID=Q2LSS1_SYNAS
          Length = 150

 Score = 61.9 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 2   ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +     +  +  +     +   +  A   I  GE    CE CG PI + R  A P   LC
Sbjct: 76  SLESDRNFELRMRDRERKLIAKMQEAIKRIDEGE-FGLCEVCGGPISEKRLMARPVTTLC 134

Query: 61  IHCQQEKDLQKP 72
           I C+ +++  + 
Sbjct: 135 IDCKTKQEKLEK 146


>UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales
           RepID=A7K6F3_VIBSE
          Length = 208

 Score = 61.9 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I +   +I   +    CE CG  I   R EA P   LCI C+   ++++
Sbjct: 85  NRDRERRLIKKIEKTLDKIKE-DDFGFCESCGVEIGVRRLEARPTADLCIDCKTLAEIKE 143

Query: 72  PAYTGYNRR 80
                  + 
Sbjct: 144 KQMLRQQQD 152


>UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C120_SPHTD
          Length = 130

 Score = 61.9 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            +  +  I RA  ++ +GE    CE C  PIP  R EA+P  R CI CQ + D ++
Sbjct: 71  LADRKVLIERAITKMDQGE-YGYCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125


>UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula
           staleyi DSM 6068 RepID=D2R5D7_9PLAN
          Length = 150

 Score = 61.9 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +A   A   +   ++ S     I RA  ++  G     C+ CG PI   R +A+P    C
Sbjct: 47  LADANAEIGSQMVEVESRELMQIDRAIEKMRAG-RYGLCDSCGGPIKLIRLQAVPYAIEC 105

Query: 61  IHCQQEKDLQKPAYTGYNRRGSKD 84
           I C +  + ++    GY R G  D
Sbjct: 106 IECARRDERRESGL-GYRRGGRFD 128


>UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria
           RepID=A6T2Z9_JANMA
          Length = 310

 Score = 61.9 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 1   MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52
           +           E             +   + ++   I  GE    CEE G PI   R  
Sbjct: 228 VPDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGE-YGWCEETGEPIGVPRLL 286

Query: 53  AIPGVRLCIHCQQEKDLQKPAYT 75
           A P   L +  QQ ++L++  Y 
Sbjct: 287 ARPTATLSLEAQQRRELKQKLYG 309


>UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria
           RepID=DKSA_BUCBP
          Length = 151

 Score = 61.9 bits (149), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              + + I +   ++   +    CE CG  I   R EA P   LCI C+   ++++    
Sbjct: 92  ERKLIEKIEKTLKKVENKD-FGYCESCGIEIGIKRLEARPTANLCIDCKTLSEIREKQIL 150

Query: 76  G 76
           G
Sbjct: 151 G 151


>UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK
           suppressor protein n=2 Tax=Brachyspira
           RepID=C0QW50_BRAHW
          Length = 121

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           Q      D +  A   I  G +  +C +C   I + R  A+P    C++C  + + +K  
Sbjct: 60  QKEKDKLDMLNNALKRIEEG-TYGKCIDCKEEINEERLTALPYTLRCVNCMSKYEDKKRR 118

Query: 74  YT 75
             
Sbjct: 119 EK 120


>UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales
           RepID=A4XDN2_SALTO
          Length = 139

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 5   WANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +  +  ++           + RA   +  G     CE CG PIP  R  A P   LC+ C
Sbjct: 74  FEREQEISLANSILERITQVERALERLDEGG-YGWCERCGNPIPVERLAAFPSATLCVTC 132

Query: 64  QQEKDLQ 70
           +Q  + +
Sbjct: 133 KQLAERR 139


>UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS
          Length = 120

 Score = 61.5 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           + +    IE A+ R            +C +CG  IP+ R  AIP   +CI CQ  ++ ++
Sbjct: 63  DLRCLQQIESALLRI-----EQGRYGKCADCGESIPEDRLRAIPYSLMCIECQSARESKR 117

Query: 72  PAY 74
            A+
Sbjct: 118 RAF 120


>UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter
          arcticus 273-4 RepID=Q4FUG7_PSYA2
          Length = 66

 Score = 61.5 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          MA         N+ ++ T+   ++RA        SL EC ECG  IP  R +A+ GV LC
Sbjct: 1  MADDADR---ANDYVDLTMAHCLSRA--PKFDKPSLTECMECGEDIPAKR-QAMGGVTLC 54

Query: 61 IHCQQEKDLQKP 72
          + CQ   + +  
Sbjct: 55 VDCQSVFEKRGK 66


>UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LGY5_SYNFM
          Length = 257

 Score = 61.5 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           + I  A G+I  GE    CE CG  I   R EAIP  RLC+ C ++ + +
Sbjct: 65  EQIDLALGKIAIGE-YGICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113


>UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4
          Tax=Proteobacteria RepID=A4JDG9_BURVG
          Length = 77

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 3  SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
            + +   + EQ  +    A  R        ES  + E CG PIP+ RR A+ G R C+ 
Sbjct: 2  DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61

Query: 63 CQQEKDL 69
          CQ+ ++ 
Sbjct: 62 CQERREQ 68


>UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI
          Length = 119

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           M+     D  + E  +  +E  I RA  +I  GE    CE C  PI   R +A P  R C
Sbjct: 47  MSMKNTLDGLIFEHHHKELEY-IERALEKIENGE-YGICEMCDEPISIQRLKAKPHARFC 104

Query: 61  IHCQQEKDLQKPA 73
           I C++  +     
Sbjct: 105 IICREIVEKDLKG 117


>UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10
           Tax=Actinomycetales RepID=A6WCW5_KINRD
          Length = 159

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
             + +   RA   +  G     CE C  P+ +AR +A P V LC+ C+   + +
Sbjct: 107 RELLEQTQRALVRLGSGV-YGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159


>UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica
           RepID=Q7UR73_RHOBA
          Length = 140

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59
           A  D V +++NS + +  +R    I             +CE+CG PIP  R +AIP    
Sbjct: 46  AAADTVQDELNSQLVEVESRELLAIEEAIARFEEGRFGDCEDCGKPIPLNRLKAIPYAVD 105

Query: 60  CIHCQQEKDLQ 70
           CI+C++  + +
Sbjct: 106 CINCRRAAERE 116


>UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8
           Tax=Deltaproteobacteria RepID=A1AL35_PELPD
          Length = 118

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
              + + I  A   I  GE    CEECG  I +AR +  P   LCI+C+ E + ++  
Sbjct: 61  ERKLINKIKEALSRIDSGE-FGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEKR 117


>UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD
          Length = 68

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D  NE+  + ++ A+A+ R       S   CE+CG  IP+ARR+A PG   CI CQ+
Sbjct: 2  DVIDQANERAENMVQAALAQ-RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQE 60

Query: 66 EKDLQKPA 73
           ++     
Sbjct: 61 LREHPARR 68


>UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ
          Length = 216

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
            + EQ    IE A+ +            +CE CG  I   R +A+P  R CI C
Sbjct: 67  NLREQKLREIEIALEKIAN-----GDYGKCESCGKEINNERLDAVPYTRYCISC 115


>UniRef50_Q48AS1 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea
           34H RepID=Q48AS1_COLP3
          Length = 104

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 2   ASGWANDDAVNE-QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           A+   ND  ++E    + +E ++ ++  +         C EC  PI   R  A+P    C
Sbjct: 40  ATETENDGVLDEIHHEAKLELSLVKSALKRITEGLYGSCVECEEPINPDRLSALPYTTKC 99

Query: 61  IHCQ 64
           I C 
Sbjct: 100 IKCA 103


>UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SPR7_HAHCH
          Length = 107

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 2   ASGWANDDAVN-EQINSTIE-DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
           A    NDD +N  ++ + IE + + +A   + +GE    C  CG  IP++R + +P   L
Sbjct: 40  AQERENDDVLNALKVETEIEINQVKKALQRLQQGE-YGVCVACGEDIPESRLQVLPFAEL 98

Query: 60  CIHCQQEKD 68
           C+ C  + +
Sbjct: 99  CVSCASKSE 107


>UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2
          Tax=Proteobacteria RepID=B8FC44_DESAA
          Length = 69

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E        +I  AR    +  +L +C++CG PIP+ARR+A+PG   C+ CQ+
Sbjct: 3  DPTDRAQEAAADYTRFSIEAARSRGSQS-TLADCQDCGDPIPEARRKAVPGCTRCLDCQE 61

Query: 66 EKDLQK 71
            + ++
Sbjct: 62 TYEQRR 67


>UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium
           RepID=A0Q071_CLONN
          Length = 206

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
               E+        I+ +  ++  G +   C  C   IP  R EA+P  + C+HC+  +D
Sbjct: 63  GIALEKAELEKLHEISESLYDMEHG-TYGICRICKNQIPDDRLEAVPYAKYCVHCKNNQD 121

Query: 69  L 69
            
Sbjct: 122 K 122


>UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales
           RepID=D0LZD2_HALO1
          Length = 124

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
             ++ + +  A  ++  G +   CE C  PI + R EA P   LCI C++ ++  +  + 
Sbjct: 66  EKSLLNKLDLALRKLGEG-TFGICEVCEEPIGKKRLEARPETTLCIQCKEAQERDERVFG 124


>UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HSA8_9FIRM
          Length = 227

 Score = 60.7 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 5   WAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           +    D         + + +  A  ++  G +   C+ CG  I   R +AIP    CI C
Sbjct: 58  FERSKDLALRDNAHLLLEQVEHALEKVAAG-NYGICDNCGREIGIERLQAIPYAARCIVC 116

Query: 64  QQEKDLQKPAYTGYNRRGSKDSQLR 88
               + +       + R  ++  L+
Sbjct: 117 ----EKKYGDKDVASPRPLEEDVLQ 137


>UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8
          Length = 66

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D  NE + + ++  +A AR  +   ES ++CE+CG PIPQARR A PG   CI CQ 
Sbjct: 3  DLADHANELVLARLDGLLA-ARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQD 61

Query: 66 EKDLQ 70
            + +
Sbjct: 62 RHERR 66


>UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus
           RepID=Q2B4E3_9BACI
          Length = 252

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D A+ E  N  ++  + +A   I  G +  +C ECG  +P  R EA+P    C+  
Sbjct: 61  EREKDQAIEEHQNEELDK-VNKALQAIEDG-TYGKCRECGKDLPFERLEAVPTALYCVD- 117

Query: 64  QQEKDLQKPAYTGYNRRGSKDSQL 87
                   P+    + R +++  L
Sbjct: 118 ------HAPSQHPASDRPAEEDVL 135


>UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1
           bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG
          Length = 119

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            +    DAI  A  +I +  +  +CE C   I   R + IP  + CI CQ+E +
Sbjct: 61  SDKMTLDAINDALVKIEK-NAYGKCEGCSNNILLERLKVIPWAKYCIQCQEESE 113


>UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces
           RepID=D1X2L9_9ACTO
          Length = 248

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
             + +   RA   +    +   CE CG PI +AR +A P   LC+  +Q+++ + 
Sbjct: 195 QEMLEQTERALARL-EAGTYGLCEICGKPIGKARMQAFPRATLCVEDKQKQERRG 248


>UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1
           Tax=Streptosporangium roseum DSM 43021
           RepID=D2B0C3_STRRD
          Length = 110

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           A    + + +++    A+ R         +   C+ CG  IP  R +A P  R C+ CQ+
Sbjct: 46  AKSGLLADIVSAERNLAVVRQALRDVTELTYGRCDGCGLAIPFERLKARPLARFCMLCQR 105

Query: 66  EKDLQ 70
             + +
Sbjct: 106 RHESR 110


>UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 Tax=Akkermansia
           muciniphila ATCC BAA-835 RepID=B2ULP7_AKKM8
          Length = 207

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 2   ASGWANDDAVNEQI-NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +  +  D A++           I +A   I  G +   CE     IP  R EAIP  RL 
Sbjct: 106 SDAYDRDFALSLLSKEQDGLYEIEQALARIDNG-TYGICEMSYKVIPILRLEAIPFARLT 164

Query: 61  IHCQQEKDLQKPAYTGYNRR 80
           + CQ + + +K     +  R
Sbjct: 165 VECQAQWEKEKGQNARFRPR 184


>UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria
           RepID=A5EW31_DICNV
          Length = 143

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   I +A   I +G     CE+C   I   R EA P   LCI C+   + ++ ++ 
Sbjct: 80  ERKLLRKIDKALERIKQGH-FGYCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF- 137

Query: 76  GYNRRGS 82
            YN R  
Sbjct: 138 -YNERNE 143


>UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema
           denticola RepID=Q73KX9_TREDE
          Length = 119

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
                    N +    I+ A+ R R          +C  C   IP+ R +A+P    CIH
Sbjct: 54  DMLEFIGENNVKKLQKIDSALERIR-----EGKYGKCITCKEQIPEDRLKALPYALKCIH 108

Query: 63  CQQEKDLQ 70
           CQ + + +
Sbjct: 109 CQAKSEKK 116


>UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE
          Length = 88

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 2  ASGWANDDAVNEQINSTIEDAIARARGEIP-RGESLDECEECGAPIPQARREAIPGVRLC 60
          A      D + EQ     +  I  AR      G+S   CE CG  IP  R++AIPGVR C
Sbjct: 13 ALMADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTC 72

Query: 61 IHCQQEKDLQKPAYTG 76
            CQ+  ++++  Y  
Sbjct: 73 TECQRVLEIRQKQYLR 88


>UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae
           RepID=C9S0U4_GEOSY
          Length = 269

 Score = 60.3 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
               D A+ E     + + I RA G I  G +   C  CG PIP  R EA+P    C  
Sbjct: 61  EREKDLALKEHAERELRE-IERALGAIADG-TYGTCRVCGRPIPYERLEALPTTLYCRE 117


>UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YK78_THEYD
          Length = 123

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 2   ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +        +  +     +   I +   +I  G +   CE CGA IP  R EA P   LC
Sbjct: 49  SQEIDRSFLLRLRDRERKLLKKIEKTLEKINNG-TYGICEACGAEIPIERLEARPVTDLC 107

Query: 61  IHCQQEKDLQKP 72
           I C+ E++  + 
Sbjct: 108 IECKTEQEEAEK 119


>UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae
           RepID=A4X6U9_SALTO
          Length = 132

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +           A   +  G +   CE CGA IP  R E  P    C+ C+Q ++ + 
Sbjct: 75  RTILDRRAQFEHALTRLEEG-TYGFCEGCGASIPVERLEIFPSATTCVTCKQTRERRA 131


>UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CWL7_HALOH
          Length = 228

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYN 78
           + + +  A   +  G +   CE+CG  I + R E IP   LC  CQ +++ +      YN
Sbjct: 72  LLNKVENALNRLEEG-NYGLCEKCGQEIREERLETIPYATLCERCQAKEEGKD-----YN 125

Query: 79  RRGSKDSQ 86
           R    + +
Sbjct: 126 RDRPLEEE 133


>UniRef50_Q02C95 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q02C95_SOLUE
          Length = 128

 Score = 59.9 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
             + ++ +    +E+A+ R             C  C   I + R +A+P  R C+ CQ E
Sbjct: 59  RMNGLDYRQLRMVEEALDRL-----ESGDFGICLACDESIAEKRLQALPWARYCVKCQDE 113

Query: 67  K 67
            
Sbjct: 114 M 114


>UniRef50_B1KFH6 Transcriptional regulator, TraR/DksA family n=3 Tax=Shewanella
           RepID=B1KFH6_SHEWM
          Length = 131

 Score = 59.9 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 6   ANDDAVNEQINST-----IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +  DA+ +Q  +      ++  I R +      +    C ECG PI   R    P   +C
Sbjct: 62  SRIDAIQQQEMAQASEVLMQQHIVRIKQIFLDTDEYGFCLECGEPIGLGRLTIHPTAEMC 121

Query: 61  IHCQQEKD 68
           I CQ E +
Sbjct: 122 IGCQSEAE 129


>UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD
          Length = 75

 Score = 59.9 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 1  MAS-GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
          M        D       + +E +++R   +   G S  EC ECG+ IP+ RRE + GV  
Sbjct: 1  MTDCSADPLDRAAALSQAHLEVSLSRI--KKFEGVSAHECVECGSEIPKKRRELLQGVTD 58

Query: 60 CIHCQQEKDLQKPAYTG 76
          C+ C   K+     Y  
Sbjct: 59 CVDCAAIKETLSKNYMR 75


>UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2
           Tax=Planctomycetaceae RepID=D2R7B0_9PLAN
          Length = 123

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 1   MASGWANDDAVNEQINSTIE------DAIARARGEIPRGESLDECEECGAPIPQARREAI 54
           MA     D+   E   S +E      + I  A   I    +   C ECG  IP+AR E +
Sbjct: 50  MADV-GTDNFEQEFTLSLMEHDGSTLEQIEAALERI-EAGAYGVCTECGCKIPKARLEVL 107

Query: 55  PGVRLCIHCQQEK 67
           P    C+ C ++ 
Sbjct: 108 PYTAHCVKCAEKA 120


>UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT
          Length = 202

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +    +   I  +  ++        CE CG  I   R EA P    CI C+   ++++  
Sbjct: 141 ERERKLIAKIDLSLKDLEDNL-YGYCESCGVEIGIKRLEARPTATKCIDCKTVDEIKEKQ 199

Query: 74  YTG 76
             G
Sbjct: 200 QFG 202


>UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter
           RepID=A1VXK8_CAMJJ
          Length = 120

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +    IED++ + +       +   CE C   I   R +  P  R CI C+Q  +  K  
Sbjct: 64  EELIEIEDSLDKIKN-----GTYGICESCDDEIDSQRLKVKPHARYCITCRQIAEQGKKH 118

Query: 74  YT 75
             
Sbjct: 119 EN 120


>UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE
          Length = 149

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 15  INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           I+  +   IA A   +  G     C EC  PI   R +A+P  R C+ CQ++ 
Sbjct: 80  IDMKLLREIADALHRMDTGH-YGVCPECEEPISAKRLDAVPWARYCVTCQEKI 131


>UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria
           RepID=A8PLZ9_9COXI
          Length = 295

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 1   MASGWANDDAVNEQI-----NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIP 55
           M+     ++  N ++        +   I  A  ++  G     C  CG  I   R EA P
Sbjct: 216 MSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGH-YGFCSSCGVEIGIRRLEARP 274

Query: 56  GVRLCIHCQQEKDLQKPAYTG 76
              LCI C+   ++++    G
Sbjct: 275 TANLCIDCKTLDEIREKQTGG 295


>UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL
          Length = 121

 Score = 59.5 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   ASGWANDDAVNEQ-INSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
              +    + N++ +   +E A+ R         +  EC  CG+ I   R EA+P  R C
Sbjct: 51  TKEFLFTQSANDRNLLQMVEGALIRI-----GEGTYGECVSCGSEINSKRLEAVPWARYC 105

Query: 61  IHCQQEKDL 69
           I CQ++ + 
Sbjct: 106 IGCQEKIEK 114


>UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58
           Tax=Betaproteobacteria RepID=Q21SV6_RHOFD
          Length = 429

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 1   MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52
           +           E             +   I ++   I  G+    C+E G  I   R  
Sbjct: 347 VPDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGD-YGYCDETGEAIGVGRLL 405

Query: 53  AIPGVRLCIHCQQEKDLQKPAYT 75
           A P   L +  QQ ++L++  + 
Sbjct: 406 ARPTANLSLEAQQRRELKQKMFG 428


>UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus
           metallidurans CH34 RepID=Q1LEV8_RALME
          Length = 123

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
             DA+ E     +ED IA ARG +  G S   C EC  PIP  R +A P  + C  CQ+E
Sbjct: 57  QADAMREHYRVELED-IAAARGRMTLG-SYAICRECEEPIPFERLQAYPTAKRCTACQRE 114

Query: 67  KDLQK 71
            + ++
Sbjct: 115 HEQKR 119


>UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
          sp. JS666 RepID=Q125W5_POLSJ
          Length = 79

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIP-------RGESLDEC--EECGAPIPQARR 51
          M   +       +      +DA+               +G S   C  + CG PIP+ RR
Sbjct: 1  MPDDFDR---AQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRR 57

Query: 52 EAIPGVRLCIHCQQEKDLQK 71
          +A+PGV+ C+ CQQ  + + 
Sbjct: 58 KALPGVKFCVECQQRLEKKG 77


>UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium
           minutum Pei191 RepID=B2KE71_ELUMP
          Length = 258

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 2   ASGWANDDAVNEQINSTI-----------EDAIARARGEIPRGESLDECEECGAPIPQAR 50
           A      D   + ++  I            D I  A  +I +G    +CE C   +P+ R
Sbjct: 180 AEVGDPIDTATQSLDKEILFEQTDNSHTQIDQIESALRKIDKGI-YGKCENCRQLLPKKR 238

Query: 51  REAIPGVRLCIHCQQEKD 68
            +A+P  R C+ CQ  K+
Sbjct: 239 IKALPFARYCVVCQSSKE 256


>UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
          aespoeensis Aspo-2 RepID=D1U4E4_9DELT
          Length = 66

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  +E      + A++ A        S + C ECGAPIP+ RR A+PGV LC+ CQ  K+
Sbjct: 6  DMGHEAEELARKAALSMAGTRRADAPSRETCAECGAPIPEPRRVAVPGVTLCVACQAAKE 65


>UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp.
          128-5-R1-1 RepID=A8V318_9AQUI
          Length = 133

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 21 DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
            I  A   I  G +   CE CG PI + R EAIP   LC    +E + 
Sbjct: 51 KKIDEALERISEG-TYGYCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98


>UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W4E4_DESAS
          Length = 231

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
             + D A+ +     I  A+  A   I  G+    C+ CG  I  AR  A+P   LC  C
Sbjct: 59  ERSKDFALRDDAMLKI-RAVEDALKNIEMGK-YGICDICGKEIGYARLTALPRTTLCKEC 116

Query: 64  QQEKDLQKPAYTGYNRRGSKDSQLR 88
           ++ ++         N R +++  L+
Sbjct: 117 KEAQERIPSR----NIRPAEEDILQ 137


>UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter
           fumaroxidans MPOB RepID=A0LMB8_SYNFM
          Length = 122

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           NE++   I + + R R           CEECG  I   R +A P    CI C++  + + 
Sbjct: 63  NERLVQEILNGLQRIR-----TGDFGVCEECGKDIELNRLKAHPSATQCIKCKKAAERKA 117

Query: 72  P 72
            
Sbjct: 118 R 118


>UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C5L2_SPHTD
          Length = 132

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           +   + ++ A+ R         +   C +CG  I  AR +A+P    C+ CQ   + +
Sbjct: 77  DAELAEVDAALDRL-----ERGTYGVCIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129


>UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT
          Length = 123

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%)

Query: 4   GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               +  ++ Q     E  +           +   C EC   I + R   +P  RLC+ C
Sbjct: 47  DLEREMGISLQEKRNRERQMIDEALVSLEEGTYGICVECNTEISEKRLAVMPFARLCVEC 106

Query: 64  QQEKDLQKPAYTGYNR 79
           Q++ +L +    G  R
Sbjct: 107 QEKIELLEKIERGEQR 122


>UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae
           RepID=Q221D7_RHOFD
          Length = 124

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 7   NDDAVNEQINSTIEDAIAR----------ARGEIPRGESLDECEECGAPIPQARREAIPG 56
            D    E     +E A+            A        S   C +CG  IP AR  A P 
Sbjct: 46  EDSTAQESSARELEFALDARDSEELDRLDAALRRIEDGSYGLCVDCGVGIPAARLHAAPD 105

Query: 57  VRLCIHCQQEKDLQKPAYT 75
              CI CQ++ +  +    
Sbjct: 106 ALRCIACQEKLEKAQARQA 124


>UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1Q506_9BACT
          Length = 140

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 2   ASGWANDDAVN-----EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  +  +      E    +I+DA+ R         +   CE C   I + R +A+P 
Sbjct: 70  TDNYERELMIELMQSGEDSVRSIDDALERI-----EEGTFGICEACEKKINRERLKAVPY 124

Query: 57  VRLCIHCQQEKD 68
             LC++CQ+E++
Sbjct: 125 ASLCVNCQREEE 136


>UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8EWK7_ARCB4
          Length = 123

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
                  IE+A+ +         +   C+ CG  IP  R +A P  + C  C+   + + 
Sbjct: 63  QLDELKQIEEALKKI-----TLGTYGICDMCGINIPLGRLKAKPFAKFCTECRTVYEQEN 117


>UniRef50_B5JMU6 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium
           DG1235 RepID=B5JMU6_9BACT
          Length = 280

 Score = 59.2 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 2   ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  D A+      +     IE+AI R         +   CE  G  I + R  A+P 
Sbjct: 181 TDTFDRDFALSMVSSEQDALQEIEEAIDRIFK-----GTYGICEMTGKQIREERLMAVPF 235

Query: 57  VRLCIHCQQEKDL 69
            R  +  Q++ + 
Sbjct: 236 TRYSMKTQEQIEK 248


>UniRef50_A8MH72 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MH72_ALKOO
          Length = 226

 Score = 59.2 bits (142), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 15/85 (17%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE------ 66
           E         I  A  +I  G +   C+ CG  I + R E +P    CI C ++      
Sbjct: 68  ENHEKNRLLEIDDAVQKINEG-TYGNCQICGNKILEERLEIMPASITCIDCAEKEIESYK 126

Query: 67  --------KDLQKPAYTGYNRRGSK 83
                   +++  PA+   N+ G  
Sbjct: 127 LSTDRSVEEEILSPAFERNNKDGED 151


>UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes
           RepID=Q7MQQ3_WOLSU
          Length = 113

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGES--LDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           D  + +++   +E  + +    + R +S     C+ C  PIP  R  A+P   +C+ C  
Sbjct: 51  DQNIQKRLLLDLEARLKKLEYALTRIDSPDFGICQICDEPIPYKRLFALPEATICVDCAN 110

Query: 66  EK 67
           E+
Sbjct: 111 ER 112


>UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia
           profundicola AmH RepID=B9L783_NAUPA
          Length = 117

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           M SG      +N++        I  A  +I  G +   CE C  PI +AR +  P  + C
Sbjct: 50  MDSGRDYQIYINQKKELE---EINDALKKIDEG-TFGICEMCEDPIQEARLKIKPYAKYC 105

Query: 61  IHCQQEKDLQKP 72
           I C++  + +  
Sbjct: 106 IICREIIEKEGK 117


>UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter
           RepID=C6E710_GEOSM
          Length = 130

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
              ++       I      A+  A+  + +G +  +CE CG  I   R   +P    C+ 
Sbjct: 56  DMLSDAGLAIADIRRNQLTALEEAQRRVEQG-TYGKCENCGEVIDIQRLRLMPFAAYCVS 114

Query: 63  CQQEKDLQKPA 73
           CQ+EK+     
Sbjct: 115 CQKEKEGPGKP 125


>UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
          BAA-1116 RepID=A7N392_VIBHB
          Length = 72

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 1  MASGWAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRL 59
          M     +  D   +     + + +ARA+ +    ES  EC ECG PIP+ARR+ + G + 
Sbjct: 1  MPDVIDHACDIEAQLTEVALANQLARAKPK-ASRESAQECGECGDPIPEARRQHMTGCQY 59

Query: 60 CIHCQQEKDLQKP 72
          C HCQ + +  K 
Sbjct: 60 CTHCQSDLEKMKR 72


>UniRef50_A8FE57 General stress protein n=2 Tax=Bacillus pumilus RepID=A8FE57_BACP2
          Length = 135

 Score = 58.8 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D V++Q+ + I+ A+ R         +   CE+ G  IP  R +A+P  R  I  ++ ++
Sbjct: 33  DQVDDQLEAEIDAALKRM-----EDGTYGICEKTGKEIPYERLKAVPYTRYSIDAKKNEE 87

Query: 69  LQKPAYTGYNRRGSKDSQLR 88
             +          +   Q+R
Sbjct: 88  TTQDP---NEFDRNFSDQMR 104


>UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula
           baltica RepID=Q7UEL7_RHOBA
          Length = 121

 Score = 58.4 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 5   WANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
            +       +  + IE+A+ R R       +  +CE+CG  IP  R + +P  R C+ CQ
Sbjct: 56  TSRMAESESRELADIEEALERLRD-----GTFGDCEDCGKSIPMNRLQVVPHARRCVRCQ 110

Query: 65  QEKD 68
           +  +
Sbjct: 111 KASE 114


>UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora
           aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO
          Length = 103

 Score = 58.4 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D        +    A      +     +   CE CG  IP AR E +P  R C+ CQQ
Sbjct: 42  DPDTLRRLIETARQGVADTAQALKRMSEGTYGVCERCGQDIPTARLEILPSARFCVPCQQ 101

Query: 66  EK 67
            +
Sbjct: 102 RR 103


>UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2
           Tax=Cystobacterineae RepID=Q1D0G7_MYXXD
          Length = 130

 Score = 58.4 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 1   MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           M +  +N +   + + + +  A+ + R +        ECEECG  IP  R  A+P    C
Sbjct: 51  MQAIASNRNRNMDGVLARVLKALGKLRDDPDA---FGECEECGDEIPLGRLRAMPYAEFC 107

Query: 61  IHCQQEKD 68
           + CQ  KD
Sbjct: 108 VTCQGNKD 115


>UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12
          Tax=Desulfovibrio RepID=A1VE28_DESVV
          Length = 78

 Score = 58.4 bits (140), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDE------CEECGAPIPQARREAI 54
          MA  +   D  ++      E AI+ AR  +  G   +       C ECG  IP+AR +A+
Sbjct: 6  MADIF---DQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKAL 62

Query: 55 PGVRLCIHCQQEKD 68
          PG  LC  C +E +
Sbjct: 63 PGCGLCRECAEEME 76


>UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria
           RepID=Q1MS84_LAWIP
          Length = 133

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 2   ASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREA 53
           A       A +++            +   I  A   I  G +   CE+CG  I   R +A
Sbjct: 52  ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDG-TYGVCEDCGDDIGTPRLKA 110

Query: 54  IPGVRLCIHCQQEKD 68
            P  +LCI+C+  ++
Sbjct: 111 RPVTKLCINCKSRQE 125


>UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS
          Length = 157

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 19  IEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +E+A+ R +       +   C+ CG  IP+AR  A+P    C++C++E   ++
Sbjct: 83  LEEALKRIKN-----GTFGVCKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130


>UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD
          Length = 118

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              +   I +A   I +G +  ECE C  PI   R  A P   LCI C+ E++ ++ 
Sbjct: 61  ERKLIMKIRQALERIEQG-TFGECECCEEPIGAERLRARPVTTLCIDCKTEQERKEK 116


>UniRef50_D1U5V5 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U5V5_9DELT
          Length = 111

 Score = 58.0 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
                        +  A   +   E    C +C  PIP AR +A+P  + C+ C +
Sbjct: 56  EAQLSKTRVRLARLGEALRRVDDDEDFGLCIDCSKPIPMARLKAMPETQYCVDCAE 111


>UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6BZJ9_DESAD
          Length = 115

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
                 +  A   + +     ECEECG  IP AR   +P  R C++C +  +
Sbjct: 63  RQRILNLEDALNRLEKDSFFGECEECGEDIPLARLLTLPESRYCVYCAEHLE 114


>UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ
          Length = 213

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           +  +A  D + +     I++AIA     +        C +CG  IP  R  A P    C+
Sbjct: 57  SKDFALIDNL-KLKLRQIDEAIA-----LINQGKYGLCIDCGQKIPVDRLFANPVAIRCV 110

Query: 62  HCQQEKDLQ 70
            CQ+  + +
Sbjct: 111 ACQKRVEER 119


>UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding
          protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO
          Length = 76

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 4  GWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               D  NE      + AI + + +     ++  C +C   IP+ R++   G   CI C
Sbjct: 1  MTDQVDRANEYTEIMQQLAIQKHQQKTREKSTVKYCLDCQEEIPEIRQKN--GYCRCIDC 58

Query: 64 QQEKDLQKPAYT 75
          Q+  +  +  Y 
Sbjct: 59 QRIIEKHQRIYR 70


>UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 Tax=Chthoniobacter
           flavus Ellin428 RepID=B4D2T0_9BACT
          Length = 187

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           +  +   I  A  +I  G +   CE  G PIP  R +A+P  R     Q E + + 
Sbjct: 93  DQDLLVEINHALSKIEEG-TYGVCELTGQPIPAERLKAVPWARFTREAQAEFEARG 147


>UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria
           RepID=B5EG80_GEOBB
          Length = 118

 Score = 58.0 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
              +   I  A   I    +   CE C   I +AR +A P   LCI C+ E++ ++ 
Sbjct: 61  ERKLIVKIQEALARI-EAGTFGICEVCEEDISEARLKARPVTTLCIDCKMEQEKKER 116


>UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria
           RepID=DKSA_HAEIN
          Length = 145

 Score = 58.0 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I     ++   +    C+ CG  I   R EA P   LCI C+   ++++
Sbjct: 82  NRDRERKLMKKIEATLKKLDT-DDFGYCDCCGEEIGIRRLEARPTADLCIDCKTLAEIRE 140

Query: 72  PAYTG 76
               G
Sbjct: 141 KQVAG 145


>UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis
           ATCC 14672 RepID=UPI0001AEFD73
          Length = 111

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           A    +   + +         I  A   +  G +   C+ CG  IP  R E +P  R C+
Sbjct: 46  AREADDLLMMQKYAVRQALTDIDAAFTRLDEG-TYGTCQGCGRDIPVERLEILPYARCCV 104

Query: 62  HCQQ 65
            CQQ
Sbjct: 105 PCQQ 108


>UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001826470
          Length = 71

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
             D   E        A++  R       S + CEECG  IP+ RR A+PG + C  CQ 
Sbjct: 2  DIIDTAAEIEELQRNAALSAHRIN-RNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQS 60

Query: 66 EKDLQKPA 73
            +L+   
Sbjct: 61 VIELKNKQ 68


>UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B6BSH6_9RICK
          Length = 180

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
             ++ S I+ A+AR R +I        C +   PI   R  A P  +  I  Q++ +  +
Sbjct: 120 QIKLISEIDKALARIREDI-----YGYCLDTAEPIGLKRLMARPVAKYTIAAQEKHEKDE 174

Query: 72  PAYT 75
             + 
Sbjct: 175 KVHA 178


>UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio
           vulgaris RepID=Q72G22_DESVH
          Length = 176

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
                    +  A   +        CE CG  IP AR +A P  RLC+ CQQE +
Sbjct: 107 HRAEHRIGLLENALRRL-EAYDYGVCEGCGEDIPVARLKASPATRLCVFCQQESE 160


>UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879
           RepID=C3XG00_9HELI
          Length = 122

 Score = 57.6 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
           DD++ E+    +++ I+ +  +   G     CE C   I   R +A P  R CI+C++  
Sbjct: 55  DDSMLERNQKEMKE-ISASLAKFDDGI-YGICEMCEDEIGIERLQAKPHARFCINCREIY 112

Query: 68  DLQKPAYTG 76
           +  +     
Sbjct: 113 EKSEKQKER 121


>UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella
          halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH
          Length = 68

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 8  DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D++V  Q  +  +    RA   +    S   C  CG  IP+ RR+A+ GV+LCI CQ   
Sbjct: 5  DESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQTLS 64

Query: 68 DLQK 71
          + ++
Sbjct: 65 ERKQ 68


>UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subtilis group
           RepID=G16O_BACSU
          Length = 163

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D   ++I+  + + + RA  ++  G +   CE+ G  IP  R EA+P  R+ +  Q + +
Sbjct: 60  DQTVKEIDRELLEEVNRALQKMKDG-TYGVCEKTGQEIPYERLEAVPYARMTVEAQADVE 118


>UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus
           RepID=C6D536_PAESJ
          Length = 234

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D    +        I++A   +  G +  +C  CG PIP  R EA+P    C+     ++
Sbjct: 64  DLALLENEDLHLTRISQALEAMDNG-TYGQCRACGKPIPDERLEALPDSLYCVEHAPRQE 122

Query: 69  LQKPA 73
                
Sbjct: 123 TSHRQ 127


>UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Paratyphi B str. SPB7
          RepID=A9N2T0_SALPB
          Length = 84

 Score = 57.2 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 7  NDDAVNEQINSTIEDAIARARGEIPR-GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          ND+          +  I   R ++     S + CE CGA IP AR+ A+PGV LC  CQ 
Sbjct: 6  NDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELCAACQD 65

Query: 66 EKDLQKPAYTGYNR 79
           K+ Q        R
Sbjct: 66 VKEKQDVHRAAGCR 79


>UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium
           retbaense DSM 5692 RepID=C8X580_DESRD
          Length = 115

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
             + +A  ++  GE    CEECG  I   R  A P  RLCI CQ++ +   
Sbjct: 66  HEVEQALHQLANGE-YGLCEECGEEIGVPRLVACPSARLCIECQEQLERAA 115


>UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=B8J371_DESDA
          Length = 120

 Score = 57.2 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
              +   I  A   I  G +   CE+CG  I   R +A P  RLCI+C+ +++  +
Sbjct: 61  ERRLIRKIQAALTRIDDG-TYGICEDCGDDISIPRLKARPVTRLCINCKAKQEEDE 115


>UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia
           RepID=B2UIX3_RALPJ
          Length = 120

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 5   WANDDAVNEQINSTIED-----------AIARARGEIPRGESLDECEECGAPIPQARREA 53
           + N D  +E++     D            +  AR  + +  S   C +CG  IP  R +A
Sbjct: 43  FENADLADEEVGEQTNDVMLVRYRSELEQLNAARERMQQ-HSYGICVDCGEAIPFLRLQA 101

Query: 54  IPGVRLCIHCQQEKDLQK 71
            P    C+ CQ   + + 
Sbjct: 102 QPTAMRCLPCQTACERRW 119


>UniRef50_Q6MGP9 DksA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGP9_BDEBA
          Length = 126

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQ 70
           + + T   AI RA G+I  G +  +CE C   I   R +  P   LCI C +E++ Q
Sbjct: 66  ERDRTALYAIERALGKIADG-TYGQCESCSEIINARRLQVRPFTALCIDCMEEQESQ 121


>UniRef50_B2V854 Transcriptional regulator, TraR/DksA family n=4
           Tax=Hydrogenothermaceae RepID=B2V854_SULSY
          Length = 147

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            +   I  AI      I  G +   CE CG  I + R EA+P   LCI   +E++
Sbjct: 62  DVEIEILKAIDDTLERIQNG-TYGICEVCGKEIEEERLEAVPWTTLCIQHAKEQE 115


>UniRef50_Q1VTU7 General stress protein, DnaK suppressor DskA n=1 Tax=Psychroflexus
           torquis ATCC 700755 RepID=Q1VTU7_9FLAO
          Length = 127

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
           + RA  +I  G +   C+ C   IP+AR E +PG   C+ C
Sbjct: 80  LLRAMDKIEEG-TYGLCDVCKKEIPRARLEIVPGALSCVVC 119


>UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57
          Length = 151

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
           N      +   I +   ++   E    CE CG  I   R EA P   LCI C+   ++++
Sbjct: 88  NRDRERKLIKKIEKTLKKV-EDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146

Query: 72  PAYTG 76
               G
Sbjct: 147 KQMAG 151


>UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM
          12804 RepID=A9ID32_BORPD
          Length = 94

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 9  DAVNEQINSTIEDAIARARGEIPR---GESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
          +            A+   R  + +   G +   C +CG  I  AR   +PG   C+ CQ 
Sbjct: 23 ELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDCQT 82

Query: 66 EKDLQKPAYTGY 77
            + Q+  +  Y
Sbjct: 83 AHEKQQTRHARY 94


>UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12E87_POLSJ
          Length = 134

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 8   DDAVNEQINSTIEDAIARARGEIP----RGESLDECEECGAPIPQARREAIPGVRLCIHC 63
            DA  +     +E  +A  R        +      C +CG  I   R  A+P    C  C
Sbjct: 61  ADAKVDHAAHELEQVLAALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTAC 120

Query: 64  QQEKDLQKPA 73
           Q   + ++  
Sbjct: 121 QAIHEHERQP 130


>UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V602_ACIBY
          Length = 72

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 2  ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
          AS     D   E     ++      + +     SL ECEECG  IP  R+     V LC+
Sbjct: 5  ASMTDKIDIAQELQLKQVQ-----IQPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCV 58

Query: 62 HCQQEKDLQKPAY 74
           C+  ++     Y
Sbjct: 59 ECKNTQEKLSKRY 71


>UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZG84_BREBN
          Length = 257

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 2   ASGWAND-DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
           +  +  + D   + ++      I +A   +  G +   C  CG  IP  R EA+P  + C
Sbjct: 57  SEMFEREKDLALDSLDRETLKEIDQALQRMEEG-TYGLCTVCGEQIPVERLEALPQSQTC 115

Query: 61  IH 62
             
Sbjct: 116 KE 117


>UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM
           8797 RepID=A6C001_9PLAN
          Length = 141

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +I       I RA   I  G     CE C   IP AR +A+P    C+ C ++++
Sbjct: 51  EIEYKELMQIRRAISLIQEG-RYGHCESCNKNIPIARLKAVPYAMFCVSCAEQRE 104


>UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CBT8_THET1
          Length = 126

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           +   ++   ++ + I  A   +  G +   C +CG  IP  R  A P    C+  Q++ D
Sbjct: 64  EIALQRNLRSVLNEIEAALKRMDEG-TYGICIDCGQEIPIERLMARPYAVRCVADQEKYD 122

Query: 69  LQKP 72
               
Sbjct: 123 RVHR 126


>UniRef50_Q9ZBS4 Putative uncharacterized protein SCO6164 n=4 Tax=Streptomyces
           RepID=Q9ZBS4_STRCO
          Length = 108

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRG------ESLDECEECGAPIPQARREAIPGVRL 59
           A     ++Q+ S  + AI R   EI          +   C  CG P+P  R E +P  R 
Sbjct: 39  AESGQADDQLMSAQKAAIERVLKEIDEAFARVEEGTYGACLGCGKPVPGERLEILPYTRY 98

Query: 60  CIHCQQEK 67
           C+ CQ+  
Sbjct: 99  CVACQRRA 106


>UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas
           sp. JS666 RepID=Q12HC6_POLSJ
          Length = 130

 Score = 56.5 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           + V+ Q +     AI +A+  +  G S   C +CG PIP  R +A P    CI CQ   +
Sbjct: 61  EHVDLQRDQEELRAIQQAQERMADG-SYGGCIDCGQPIPFERLKAQPSASRCIACQTRFE 119

Query: 69  L 69
            
Sbjct: 120 Q 120


>UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GGH6_9NEIS
          Length = 75

 Score = 56.5 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIA-RARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
          D   E      + A+  +A+   P+  S   C++CG  IP+ARR A  G + CI CQ+  
Sbjct: 6  DQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIECQERI 65

Query: 68 DLQKPAYT 75
          +  K  Y 
Sbjct: 66 EHAKAQYA 73


>UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria
           RepID=A4SHJ5_AERS4
          Length = 128

 Score = 56.5 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 1   MASGWANDDAVNEQINSTIE--------DAIARARGEIPRGESLDECEECGAPIPQARRE 52
           MA           +                +  A   I  G+    CE CG  I   R +
Sbjct: 43  MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGD-FGYCESCGDEISLKRLQ 101

Query: 53  AIPGVRLCIHCQQEKDLQKPA 73
           A P  R C+ CQ  K+     
Sbjct: 102 ARPESRFCVECQSTKEFNDTH 122


>UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacter
           RepID=Q7VGT4_HELHP
          Length = 118

 Score = 56.5 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
           I  A  +I  G +   CE C   I   R +  P  + CI+C++  +  +    
Sbjct: 67  IRNALQKIKDG-TFGVCEMCDDEIDVERLKVKPHAKYCINCRELFEQTQKKER 118


>UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1
           RepID=A2SLK5_METPP
          Length = 122

 Score = 56.5 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           ++    +  A+ R         S   CE CG PI   R  A+P  R C+ CQ++ D 
Sbjct: 66  QRELDEVSAALQRL-----NTGSYGHCERCGEPIGLPRLRALPEARHCLDCQEQADR 117


>UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2
           Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU
          Length = 131

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
                  +E A+ R            +C +CG  I   R    P  + C+ CQ+  +   
Sbjct: 69  QVNEMREVEAALKRLADL-----DYGDCIDCGGEIGFDRLMVYPTAQRCVRCQEVHEKTY 123

Query: 72  PAYT 75
               
Sbjct: 124 MHEN 127


>UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65
           Tax=Betaproteobacteria RepID=Q12EM6_POLSJ
          Length = 450

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 1   MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52
           +           E             +   I ++   I  G+    C+E G PI   R  
Sbjct: 368 VPDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGD-YGYCDETGEPIGVGRLI 426

Query: 53  AIPGVRLCIHCQQEKDLQKPAYT 75
           A P   L +  QQ ++L++  + 
Sbjct: 427 ARPTANLSLEAQQRRELKQKMFG 449


>UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT
          Length = 123

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
           N D   +     +   I +A   I  GE   EC+ CG PI   R EA P   LCI C+  
Sbjct: 55  NFDLKIKDRERRLIKKIDQAIERIQNGE-FGECDACGGPISVKRLEARPVTTLCIECKTA 113

Query: 67  KDLQKP 72
           ++ ++ 
Sbjct: 114 QEQEER 119


>UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia
           multivorans RepID=A9AKZ2_BURM1
          Length = 256

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           A  + + D     +      AI RA+  +  G S  +C +C  P+  AR  A P    C 
Sbjct: 180 ADLFVDVDHALIGMKLAELRAIRRAQQRMVDG-SYGDCIDCDGPVGYARLRARPTAERCT 238

Query: 62  HCQQEKDLQ 70
           HCQ   + +
Sbjct: 239 HCQALYERR 247


>UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio
           RepID=D2L9K5_9DELT
          Length = 120

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 21  DAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
             I  A   I  G +  EC ECG  I  AR +A P   LCI C+  ++  +
Sbjct: 66  KKIKEALDRIDEG-TYGECVECGEDISVARMKARPVTTLCIKCKSRQEADE 115


>UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL
          Length = 245

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
           +E   + +EDA+ R         S   C  CG PI   R  AIP    C  
Sbjct: 73  HELHLARVEDALERI-----EDGSYGYCATCGKPISYERLRAIPETAYCKD 118


>UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis
           HTCC2594 RepID=Q2NBT1_ERYLH
          Length = 104

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 8   DDAVNEQINSTIEDAIARARGEIP--RGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
           DD   E ++  +   I + R  +      S   C +CG PIP+ R EA P    CI C 
Sbjct: 46  DDEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKCA 104


>UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD
          Length = 74

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          +   +      + AI  AR +   G   +EC ECG PIP ARR  +P    C  CQ   +
Sbjct: 8  ELAQQIEQMQRDVAIELARAQC-HGAGAEECVECGEPIPAARRACVPYATRCTECQGRFE 66

Query: 69 LQKPAYTG 76
           ++  Y  
Sbjct: 67 QRRTGYPR 74


>UniRef50_Q3A5P4 DnaK suppressor protein n=1 Tax=Pelobacter carbinolicus DSM 2380
           RepID=Q3A5P4_PELCD
          Length = 127

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +    I++A+ R R       S   CE CG  I  AR E +P  R C+ C+QE + +   
Sbjct: 64  EEILEIDEALERLRD-----GSYGRCEACGKTIDIARLEILPFTRRCLTCRQEAEKEAKT 118

Query: 74  YTG 76
             G
Sbjct: 119 KAG 121


>UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae
           RepID=B4U7Z4_HYDS0
          Length = 118

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            + +   I      I  G +   CE CGA IP  R +A P   +CI C++ ++
Sbjct: 62  ETKLLKKIEYTLARIENG-TYGYCEVCGAEIPYERLKARPVTSMCIRCKELEE 113


>UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum
          intermedium LMG 3301 RepID=C4WG44_9RHIZ
          Length = 76

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M  G    +  + +     +  IA AR  + +  +L +C  CG  I   RR A+P  R C
Sbjct: 1  MKIGNFAHELADMRAEQERDAGIAAARAPLKQTGTL-DCIRCGDEIEAERRAALPSARRC 59

Query: 61 IHCQQEKDLQK 71
          + CQ+  +  +
Sbjct: 60 VDCQESFERWQ 70


>UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium
          extorquens AM1 RepID=C5B4E4_METEA
          Length = 73

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESL-DECEECGAPIPQARREAIPGVRL 59
          MA      D +       ++  +A  R      +   ++C++CG  IP  RR A P  R 
Sbjct: 1  MADDV---DMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRR 57

Query: 60 CIHCQQEKDL 69
          C+ CQ   + 
Sbjct: 58 CVRCQTLAER 67


>UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3
          Length = 67

 Score = 55.7 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 9  DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
          D  N+     + + +         GESL ECE+CG  IP ARRE +PGVR C+ CQ+  +
Sbjct: 5  DIANDYAERELAERLYS--RVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYLE 62


>UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I8K1_9CLOT
          Length = 204

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHC 63
               E     + D I  A   I  G S  +C++CG  I + R + +P    CI C
Sbjct: 63  GRALEANERALLDKIDDAVRAIDEG-SYGKCQKCGKEIDKERLDFLPYALNCIEC 116


>UniRef50_Q01U65 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q01U65_SOLUE
          Length = 129

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRG-------ESLDECEECGAPIPQARREAI 54
                      E+  +              +G        S   C  C   I   R +A+
Sbjct: 36  PDAIDEVQLAGERELAIRNLDRESNLLRNVKGALVRVADGSYGVCMHCEEDIKPKRLDAV 95

Query: 55  PGVRLCIHCQQEKDLQK 71
           P  + CI CQ+  D  +
Sbjct: 96  PWTKYCIKCQEAADRHE 112


>UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A882_GEMAT
          Length = 127

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 22  AIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
            + +A   + +   +  +C +CG  I   R +A+P  R CI C+Q ++  K +
Sbjct: 75  HLDQALRRLYKAPATFGKCHQCGEDIAFERLDALPNARYCIACKQREEDAKKS 127


>UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=A0RK79_BACAH
          Length = 243

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 1   MASGW---ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGV 57
           MA+       D  + E  +  +ED   +   +     +   CE  G  IP  R EA+P  
Sbjct: 53  MATELYEREKDFGLIELWHKQLED--TKHALQKIEAGTYGICEVSGEEIPFERLEAMPTA 110

Query: 58  RLCIHCQQEK 67
             CI     K
Sbjct: 111 TTCIQHATNK 120


>UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 Tax=Opitutaceae
           RepID=B1ZV03_OPITP
          Length = 297

 Score = 55.3 bits (132), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 2   ASGWANDDAV-----NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  D A+      ++  + I+ AI R         +   CE    PI + R  A+P 
Sbjct: 200 TDTFDRDFALSLVSSEQEALTEIDAAIKRI-----HDGTYGICEITQKPIAKERLLAVPF 254

Query: 57  VRLCIHCQQEKDL 69
            R     Q++ + 
Sbjct: 255 TRYSAEAQKDLEK 267


>UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP
          Length = 212

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 9   DAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
           D    +       A+  A   + RG +   C+ECG  I   R EA+P    C  C+   +
Sbjct: 67  DFALRENARFRLLAVEDALARMDRG-TYGRCDECGVDIDLERLEAVPFTTKCRECKARAE 125

Query: 69  LQKPAYT 75
            +     
Sbjct: 126 GKDERAR 132


>UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7
          Length = 69

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRL 59
          MA  +        +     E A+   +  + P G SL  C+ECG  IP+ARR A+ G+  
Sbjct: 1  MADCFDR---AQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIR 56

Query: 60 CIHCQQEKDLQKP 72
          C  CQ   +    
Sbjct: 57 CTPCQARFEKGGR 69


>UniRef50_B9XD69 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium
           Ellin514 RepID=B9XD69_9BACT
          Length = 184

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 2   ASGWANDDA-----VNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPG 56
              +  D A      ++     IE AI R         +   CE  G PI   R  AIP 
Sbjct: 82  TDTYDRDFALSMLSADQSAVYEIEQAIQRI-----ESNTYGICEMTGKPIQSERLNAIPW 136

Query: 57  VRLCIHCQQEKDL 69
            R  +  ++E + 
Sbjct: 137 TRFSVEAERELER 149


>UniRef50_Q021L0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q021L0_SOLUE
          Length = 129

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
               ++ +    + DA+ R         S   C+ C   I   R   +P    C+ CQ+ 
Sbjct: 53  RQLELDHKRMRGLRDALERI-----EDGSYGICQRCDEDISLKRLRVVPWASYCLRCQES 107

Query: 67  KDL 69
            D 
Sbjct: 108 ADH 110


>UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551
           RepID=A3RXC3_RALSO
          Length = 224

 Score = 55.3 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 1   MASGWANDDAVNEQI--------NSTIEDAIARARGEIPRGESLDECEECGAPIPQARRE 52
           +           E             +   + ++   I  G +   C+E G PI   R  
Sbjct: 142 VPDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEG-NYGYCDETGEPIGVPRLL 200

Query: 53  AIPGVRLCIHCQQEKDLQKPAYT 75
           A P   L +  Q+ ++ ++  + 
Sbjct: 201 ARPTATLTLEAQERREKRQKLFG 223


>UniRef50_C6Q1P6 Transcriptional regulator, TraR/DksA family n=13 Tax=Clostridium
           RepID=C6Q1P6_9CLOT
          Length = 201

 Score = 54.9 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK-------- 67
             +I   I  +   I +G +  +C  CG  I + R E IP    C+ CQ+          
Sbjct: 70  ELSIIKKIENSLSNIDKG-TYGKCSICGKDIKEERLEFIPYTDHCVECQKSLSNSYSDEK 128

Query: 68  -----DLQKPAYT---GYNRRGSK 83
                + Q+P Y    GYN R  +
Sbjct: 129 RNTPIEKQEPGYPFGYGYNDRRDE 152


>UniRef50_C5RLG0 Transcriptional regulator, TraR/DksA family n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RLG0_CLOCL
          Length = 199

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
            + +   I  A   +  G+    C  C   I + R + +P  + C  CQ           
Sbjct: 71  ETNMLGKINEALDALENGD-YGLCGNCQKEITKERLDFLPYAKYCAKCQGIM--HTLRER 127

Query: 76  GYNRRGSKDSQLR 88
            +  R +++  L+
Sbjct: 128 TFEDRPNEEYVLK 140


>UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1
          RepID=B0ZSI9_9CAUD
          Length = 75

 Score = 54.9 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%)

Query: 1  MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLC 60
          M+           ++        AR +         + C ECG  I   RR+A+P    C
Sbjct: 1  MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60

Query: 61 IHCQQEKDLQKPAYT 75
            CQ+  D     Y 
Sbjct: 61 FGCQEFVDRTAKGYR 75


>UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM
          Length = 119

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 18  TIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
                + RA  E    E    C++CG  IP AR  A+P    C+HC   ++ +     
Sbjct: 58  ETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCVHCMSAREERGAQAR 115


>UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog
           n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS
          Length = 138

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
                 AI  A   I   ++   C++ G PI   R    P        Q   +       
Sbjct: 76  ERAEAMAIKAALVRIEE-DAYGWCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKHVR 134

Query: 76  G 76
            
Sbjct: 135 A 135


>UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus
           RepID=Q473A0_RALEJ
          Length = 124

 Score = 54.5 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 4   GWANDDAVNEQINSTIED-----AIARARGEIPRGESLDECEECGAPIPQARREAIPGVR 58
             A ++ V  Q ++ +E      A  RA  E  +      C +CG  IP +R +A P  R
Sbjct: 47  DLAEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGTCTDCGEAIPYSRLQAYPTAR 106

Query: 59  LCIHCQQEKDL 69
            C  CQ+  + 
Sbjct: 107 RCADCQRGHER 117


>UniRef50_Q30RD2 Transcriptional regulators, TraR/DksA family n=3
           Tax=Epsilonproteobacteria RepID=Q30RD2_SULDN
          Length = 116

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
            EQ    I   + +             CE C  PI   R +  P    CI C++  +  +
Sbjct: 62  QEQELREINVTLGKI-----ATGDYGICEMCEDPIGFQRLKVKPHAIYCIDCREIVEKSR 116


>UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6Q9W6_SULNB
          Length = 118

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 2   ASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCI 61
           ++  A D A+ EQ    + + I  A  +I  G +   CE C  PI +AR E     R CI
Sbjct: 50  SAETAVDSAILEQQRKELAE-IDLALDKIKNG-TYGICEMCEEPIGKARLEVKNFARFCI 107

Query: 62  HCQQEKDLQK 71
            C++  + ++
Sbjct: 108 TCREINEKEQ 117


>UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1
           Tax=Desulfomicrobium baculatum DSM 4028
           RepID=C7LTL7_DESBD
          Length = 133

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 29  EIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTG 76
           +    +S   CE CG  I   R  AIP    CI CQ+  D     +  
Sbjct: 75  KAIDNDSYGICEMCGEHIADRRLLAIPSALFCIECQEMIDRLPGEFGR 122


>UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD
          Length = 130

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
               + + RA  +I  G +   C++ G PIP+ R EA+P     +  QQ  D  +  
Sbjct: 73  RRRLEDVERALQKIEEG-TYGVCDDTGEPIPKGRLEAMPEAIRTVEAQQRHDRVRRP 128


>UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68
           Tax=Alphaproteobacteria RepID=A7HW84_PARL1
          Length = 146

 Score = 54.5 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 16  NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
              +   I  A   I  G +   CEE G PI   R +A P   L I  Q+  + ++  Y 
Sbjct: 86  QRKLVSKIDAAIRRIDEG-TYGYCEETGEPISLKRLDARPIATLSIEAQERHERREKVYR 144


>UniRef50_C0R4V6 DnaK suppressor protein, putative n=6 Tax=Wolbachia
           RepID=C0R4V6_WOLWR
          Length = 130

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 5   WANDDAVNEQINSTIEDAIARARGEIPRG--ESLDECEECGAPIPQARREAIPGVRLCIH 62
           ++++D+ NE++    +D   + +  + +    +   C+  G  I   R +A P    CI 
Sbjct: 55  YSDEDSGNEELIKRRKDRKEKIKEALEKIKLGTYGYCDGTGEEIGVERLKANPLAIYCIE 114

Query: 63  CQQEKDLQKPAYT 75
            Q+  + +K  Y 
Sbjct: 115 EQERVEKEKNVYN 127


>UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4
           Tax=Anaeromyxobacter RepID=B4UII3_ANASK
          Length = 144

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 6   ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           A       +    I+ AIAR             C +C   I   R  A+P   LC  C Q
Sbjct: 74  ARLGENQRRELVQIDAAIARI-----DAGEYGICRDCEQDIDPRRLAALPYAVLCTECAQ 128

Query: 66  EKDLQK 71
            ++  +
Sbjct: 129 RRERAQ 134


>UniRef50_B8GMT5 Transcriptional regulator, TraR/DksA family n=2
           Tax=Gammaproteobacteria RepID=B8GMT5_THISH
          Length = 132

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           + +    +E A+ R       G+S   C +CG  I   R +A P  + C  CQ + + 
Sbjct: 70  HVEEVRDVEAALLRI-----AGQSYGICTDCGDAIAYERLDAYPTAKRCARCQAQHEK 122


>UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID=B0SIE7_LEPBA
          Length = 154

 Score = 54.1 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +    IE A+ +         +   CE     IP AR +AIP  R  +   ++    +  
Sbjct: 77  ETLREIELALEKI-----ENGTYGICEGTKKKIPLARLKAIPWTRFTVEFAEQMAKSRNR 131

Query: 74  YTGYNRRG 81
             GY    
Sbjct: 132 AGGYRMDS 139


>UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella
           koreensis DSM 16069 RepID=C7R8Q8_KANKD
          Length = 120

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
             + + +     A+ +A   I  G+    C EC  PI   R E  P   LC+ CQ  K+ 
Sbjct: 58  EASVERDKKRLVAVRKALKRIEEGQ-YGFCLECDEPISAKRLEVAPETELCLDCQSFKEE 116

Query: 70  QKP 72
              
Sbjct: 117 HDR 119


>UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum
           RepID=C6HWS3_9BACT
          Length = 121

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 14  QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPA 73
           +    +   I  A   I  G S   CE CG  I + R  A P    CI C+   +  + A
Sbjct: 58  EREKKLLRKIDEALERIEEG-SFGICERCGEAIEEKRMLARPVTTYCIACKTILEEAERA 116

Query: 74  Y 74
            
Sbjct: 117 E 117


>UniRef50_UPI0001C4239D hypothetical protein BpOF4_09730 n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C4239D
          Length = 215

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 16/89 (17%)

Query: 9   DAVNEQINSTIEDAIARA----------RGEIPRGESLDECEECGAPIPQARREAIPGVR 58
           D   E  +  +E A+ +                   +   CE CG PIP  R EA+P  R
Sbjct: 53  DLATELHDRELEAALDQHSKDELEEINQALAAIEDGTYGICEVCGEPIPFERLEALPTAR 112

Query: 59  LCIHCQQEKDLQKPAYTGYNRRGSKDSQL 87
                    +          RR  ++  +
Sbjct: 113 R------RIEHADVNIEDETRRPVEEEVM 135


>UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3EVE8_9BACT
          Length = 52

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 31 PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAY 74
          P+G+S   C +CG  IP  RRE +PGV+ CI CQ+E++     Y
Sbjct: 8  PKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51


>UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1
          Tax=Cardiobacterium hominis ATCC 15826
          RepID=C8N773_9GAMM
          Length = 69

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 14 QINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          +I          AR  IP      ECE+CG PIP+ARR A P    C  CQ   +    
Sbjct: 9  EIEEMNRAQALAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQARHERHAK 67


>UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1
          Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW
          Length = 79

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 27 RGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKP 72
          R       S   C+ CG  IP+ARR A+PGV LC+ CQ+ ++    
Sbjct: 27 RNVHNGRISNTCCDACGNEIPEARRLAVPGVELCVGCQEVEEHLTK 72


>UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2
           RepID=C0QJK4_DESAH
          Length = 114

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 8   DDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
            +    +        + RA   I        C  C  PIP AR   +P   LC+ C 
Sbjct: 54  MNEAALKRARITLSKLERALARIGS-PDFGLCSACEEPIPFARLMILPETELCVKCA 109


>UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4
           Tax=Anaeromyxobacter RepID=A7HEW6_ANADF
          Length = 130

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 16  NSTIEDAIARARGEIPRGE-SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            + +   I RA  ++         CE+C   I   R   +P    C  CQ + +
Sbjct: 63  QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTE 116


>UniRef50_C9YVQ5 Putative uncharacterized protein n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9YVQ5_STRSW
          Length = 132

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 9   DAVNEQINSTIEDAIARARGEIP------RGESLDECEECGAPIPQARREAIPGVRLCIH 62
               EQ+     D I R   EI       +  +   C  C  PIP  R E +P  R C+ 
Sbjct: 67  QEAGEQLMPGQRDTIERVLKEIDAAFVRVQEHTYGTCLGCSKPIPVERLEILPYTRFCVP 126

Query: 63  CQQ 65
           C++
Sbjct: 127 CRR 129


>UniRef50_D1ACI4 Transcriptional regulator, TraR/DksA family n=2
           Tax=Streptosporangineae RepID=D1ACI4_THECD
          Length = 121

 Score = 53.4 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 3   SGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIH 62
           S     DA  E++       +A A   I  G +   C  CG PI   R EA P    C+ 
Sbjct: 54  SDAEQADAALERLRRQRNSVLA-ALQRIAAG-TYGRCVTCGKPIAAGRLEARPDAARCLT 111

Query: 63  CQQEKDLQKP 72
           CQ   D  + 
Sbjct: 112 CQARYDRARR 121


>UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          RepID=UPI000190AE5D
          Length = 75

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 1  MASGWANDDAVNEQINSTIEDAIA--RARGEIPRGESLDECEECGAPIPQARREAIPGVR 58
          M+     D     +    I++  A  RA   I    S   C +CG  IP +RRE+IPGV 
Sbjct: 1  MSIDVD-DSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVS 59

Query: 59 LCIHCQQEKDLQKPAY 74
          LC++CQ+ ++      
Sbjct: 60 LCMYCQEWRESGDKKQ 75


>UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1
          Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK
          Length = 72

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 7  NDDAVNEQINSTIEDAI-ARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           +D   E      E  I  +    +  G     C++CG  I + RR AI GV+ CI CQ+
Sbjct: 3  PEDWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEIEKERR-AIKGVKRCIFCQE 61

Query: 66 EKDL 69
            + 
Sbjct: 62 RYER 65


>UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J2D3_DESDA
          Length = 130

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 38  ECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGS 82
           +C +CG  IP  R  A PG   C  CQQ+++          +RG+
Sbjct: 77  QCVDCGEDIPLKRLVAAPGTVRCFSCQQQEERAAAPLAATVQRGT 121


>UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum
          RepID=A4TVR6_9PROT
          Length = 76

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%)

Query: 6  ANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
           + D   E+I++    A+           S   C  CG  I   R  A P  R C  C  
Sbjct: 2  DDIDCAAERIDAFNAVALQAVLARTSGAPSSGICRACGCDIEPERLRATPHARHCKECAA 61

Query: 66 EKDLQKPAYTGYNRR 80
          E + +   +     R
Sbjct: 62 EIEAENRRHNRCGPR 76


>UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3
           Tax=Proteobacteria RepID=Q0AHN9_NITEC
          Length = 135

 Score = 53.0 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 23  IARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDL 69
           I  A   I  G+    C +CG P+   R +A P  + C  CQ  ++ 
Sbjct: 80  IVAAEDRIATGK-YGLCIDCGEPVRYKRLDAYPTAKRCFTCQVRRER 125


>UniRef50_A6TRY0 Transcriptional regulator, TraR/DksA family n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TRY0_ALKMQ
          Length = 224

 Score = 52.6 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 13  EQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQ 64
           E         I RA  +I  G +  EC+ CG  IP  R E +P   +C+ C 
Sbjct: 68  ENHERYRVTEIDRALEKIQEG-TYGECQLCGQGIPDERLEVMPEANICMVCA 118


>UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9
           Tax=Campylobacterales RepID=A0RMM0_CAMFF
          Length = 122

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 12  NEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQK 71
                + I++++ +         +   C+ C   I   R +  P  + CI C++  +   
Sbjct: 62  QRSELNEIDESLKKIANR-----TYGICDMCEDEIDIERLKVKPNAKYCITCREIIEKNN 116

Query: 72  P 72
            
Sbjct: 117 K 117


>UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio
           salexigens DSM 2638 RepID=C6C0K2_DESAD
          Length = 116

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 36  LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
              CE+CG  I  AR +A P  R C+ CQ   +
Sbjct: 76  FGICEDCGEEIALARIKANPTTRFCVSCQSRME 108


>UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio
           sp. JE062 RepID=B6R7R7_9RHOB
          Length = 118

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67
             N++  +     I  A   I   E    C ECG  IP+AR    P    C+ C +  
Sbjct: 61  QANDRQRARELQRIDGALQRIKEEE-YGFCLECGEDIPEARLRVDPAALYCVSCAKLF 117


>UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria
           RepID=B4SQA3_STRM5
          Length = 405

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 17  STIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 75
             +   I      +  G+    C + G  I   R EA       I  Q+  +  +    
Sbjct: 347 RKLIGKIDSTLKRLEAGD-YGYCVDTGEEIGLERLEARLTAERTIDAQERWEHLQKQQG 404


>UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfuromonas
           acetoxidans DSM 684 RepID=Q1JWV8_DESAC
          Length = 139

 Score = 52.6 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 7   NDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQE 66
               ++    S +   I  A   I  G S   C E G  I   R  A P   L +  Q+ 
Sbjct: 68  RMTLISHDRKSRLLAQINAALLRIKEG-SYGYCVETGEEIGLRRLLAYPAAFLLVEVQEA 126

Query: 67  KDLQKPAYT 75
           ++ +  ++ 
Sbjct: 127 REHRSRSFA 135


>UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSA0_ACIC1
          Length = 113

 Score = 52.2 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 10  AVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68
            V ++    + +A+ R         +   C  CGAP+P+ R EA P    C+ CQ + +
Sbjct: 57  EVAQEQRRQVLEALQRI-----ENGTYGLCVSCGAPLPEGRLEAKPEAARCLSCQAKLE 110


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.311    0.149    0.532 

Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,794,022
Number of Sequences: 3077464
Number of extensions: 21770276
Number of successful extensions: 59938
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 765
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 59087
Number of HSP's gapped (non-prelim): 858
length of query: 88
length of database: 1,040,396,356
effective HSP length: 58
effective length of query: 30
effective length of database: 861,903,444
effective search space: 25857103320
effective search space used: 25857103320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 87 (38.0 bits)
