17/01/2012 04:26:20 : INFO  : Run start: Tue Jan 17 04:26:20 GMT 2012
17/01/2012 04:26:20 : INFO  : Initialised job
17/01/2012 04:26:20 : INFO  : Renaming log file 'phyre2_20120117_042620.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/phyre_20120117_042620.log'
17/01/2012 04:26:20 : INFO  : Initialised job:
Sequence
>batch____
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGS
LKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLN
ADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNG
VVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL
IYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRR
VLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDF
LFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAF
NQ

17/01/2012 04:26:20 : INFO  : Checked sequence
17/01/2012 04:26:20 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 04:26:20 : INFO  : PSI-BLAST 3 iterations
17/01/2012 04:28:40 : INFO  : PSI-BLAST 5 iterations
17/01/2012 04:32:19 : INFO  : Finished PSI-BLAST
17/01/2012 04:32:19 : INFO  : Running Buildali to generate a3m file
17/01/2012 05:22:16 : INFO  : Converting to HMM
17/01/2012 05:22:27 : INFO  : Calibrating HMM
17/01/2012 05:22:38 : INFO  : Searching HMM database
17/01/2012 05:30:19 : INFO  : Finished buildali
17/01/2012 05:30:19 : INFO  : Predicting secondary structure
17/01/2012 05:30:20 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 05:30:20 : INFO  : Predicting Disordered regions
17/01/2012 05:30:20 : INFO  : Predicted Disorder (Disopred)
17/01/2012 05:30:20 : INFO  : Running memsat_svm check
17/01/2012 05:35:16 : INFO  : Running memsat_svm full
17/01/2012 05:39:05 : INFO  : Predicted Transmembrane (memsat_svm) ID '4ead16e1a9262d7d'
17/01/2012 05:39:05 : INFO  : Initialising fold library search
17/01/2012 05:39:06 : INFO  : Initialised search input
17/01/2012 05:39:06 : INFO  : Building Ensemble models
17/01/2012 05:39:06 : INFO  : Building hh.c1pj6A_.model.1.pdb
17/01/2012 05:39:06 : INFO  : Building hh.c3dmeB_.model.2.pdb
17/01/2012 05:39:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/hh.c3dmeB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/c3dmeB_.2.pdb
17/01/2012 05:39:07 : INFO  : Building hh.c3ps9A_.model.3.pdb
17/01/2012 05:39:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/hh.c3ps9A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/c3ps9A_.3.pdb
17/01/2012 05:39:07 : INFO  : Building hh.c2gahB_.model.4.pdb
17/01/2012 05:39:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/hh.c2gahB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/c2gahB_.4.pdb
17/01/2012 05:39:08 : INFO  : Building hh.c3pvcA_.model.5.pdb
17/01/2012 05:39:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/hh.c3pvcA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/c3pvcA_.5.pdb
17/01/2012 05:39:08 : INFO  : Building hh.c1y56B_.model.6.pdb
17/01/2012 05:39:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/hh.c1y56B_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4ead16e1a9262d7d/c1y56B_.6.pdb
17/01/2012 05:39:09 : INFO  : Building c1pj6A_.1.pdb
17/01/2012 05:39:09 : INFO  : Building c3dmeB_.2.pdb
17/01/2012 05:39:10 : INFO  : Building c3ps9A_.3.pdb
17/01/2012 05:39:10 : INFO  : Building c2gahB_.4.pdb
17/01/2012 05:39:10 : INFO  : Building c3pvcA_.5.pdb
17/01/2012 05:39:11 : INFO  : Building c1y56B_.6.pdb
17/01/2012 05:39:11 : INFO  : Building c3djeA_.7.pdb
17/01/2012 05:39:12 : INFO  : Building c2r4jA_.8.pdb
17/01/2012 05:39:12 : INFO  : Building c2rgoA_.9.pdb
17/01/2012 05:39:13 : INFO  : Building c2olnA_.10.pdb
17/01/2012 05:39:13 : INFO  : Building c3nyeA_.11.pdb
17/01/2012 05:39:14 : INFO  : Building c3bhkA_.12.pdb
17/01/2012 05:39:14 : INFO  : Building c2rghA_.13.pdb
17/01/2012 05:39:14 : INFO  : Building c2uzzD_.14.pdb
17/01/2012 05:39:15 : INFO  : Building c3da1A_.15.pdb
17/01/2012 05:39:15 : INFO  : Building c1ryiB_.16.pdb
17/01/2012 05:39:16 : INFO  : Building c1kifE_.17.pdb
17/01/2012 05:39:16 : INFO  : Building d2gf3a1.18.pdb
17/01/2012 05:39:17 : INFO  : Building c1c0iA_.19.pdb
17/01/2012 05:39:17 : INFO  : Building d1ryia1.20.pdb
17/01/2012 05:39:37 : INFO  : Finished HH model building
17/01/2012 05:39:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 05:39:48 : INFO  : html domain output complete ID '4ead16e1a9262d7d'
17/01/2012 09:21:31 : INFO  : Run end  : Tue Jan 17 09:21:31 GMT 2012
