BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (173 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=... 234 6e-61 UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=... 208 7e-53 UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=... 179 3e-44 UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=... 172 3e-42 UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=... 172 4e-42 UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=... 172 5e-42 UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=... 168 8e-41 UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=... 164 1e-39 UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=... 161 8e-39 UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=... 161 8e-39 UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=... 159 3e-38 UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=... 156 3e-37 UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea bla... 155 5e-37 UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxy... 154 9e-37 UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=... 154 9e-37 UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=... 153 2e-36 UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=... 151 7e-36 UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=... 149 3e-35 UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=... 149 5e-35 UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=... 147 2e-34 UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=... 146 3e-34 UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=... 145 6e-34 UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=... 145 7e-34 UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=... 142 5e-33 UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=... 142 6e-33 UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=... 139 4e-32 UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=... 138 7e-32 UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=... 138 1e-31 UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=... 135 6e-31 UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=... 135 8e-31 UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=... 134 1e-30 UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax... 132 5e-30 UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=... 132 6e-30 UniRef50_D2UF38 Putative holliday junction resolvasome, endonucl... 130 2e-29 UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=... 129 4e-29 UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=... 128 8e-29 UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=... 127 2e-28 UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=... 125 7e-28 UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=... 125 8e-28 UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=... 125 8e-28 UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=... 125 8e-28 UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=... 124 9e-28 UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemm... 124 1e-27 UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=... 124 1e-27 UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=... 124 2e-27 UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=... 124 2e-27 UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=... 122 5e-27 UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=... 121 8e-27 UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=... 121 1e-26 UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=... 120 2e-26 UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=... 119 4e-26 UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=... 119 5e-26 UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=... 118 7e-26 UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=... 117 1e-25 UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=... 117 1e-25 UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=... 117 1e-25 UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=... 117 2e-25 UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=... 117 2e-25 UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=... 116 3e-25 UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=... 116 3e-25 UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=... 116 4e-25 UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=... 116 4e-25 UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=... 115 4e-25 UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=... 115 4e-25 UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=... 114 1e-24 UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=... 113 2e-24 UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=... 113 2e-24 UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease ... 113 3e-24 UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=... 113 3e-24 UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subu... 112 6e-24 UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=... 112 6e-24 UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistip... 112 7e-24 UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=... 111 1e-23 UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=... 110 1e-23 UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=... 110 2e-23 UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=... 110 2e-23 UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=... 110 3e-23 UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=... 110 3e-23 UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=... 110 3e-23 UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=... 110 3e-23 UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=... 109 4e-23 UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=... 108 5e-23 UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=... 108 7e-23 UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=... 107 2e-22 UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=... 106 3e-22 UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=... 106 3e-22 UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=... 106 4e-22 UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=... 105 8e-22 UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=... 105 9e-22 UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=... 103 2e-21 UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=... 102 4e-21 UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=... 102 5e-21 UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=... 102 5e-21 UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=... 102 7e-21 UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=... 102 7e-21 UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=... 101 8e-21 UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=... 100 2e-20 UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=... 100 2e-20 UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=... 100 3e-20 UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=... 99 5e-20 UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=... 99 6e-20 UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=... 98 1e-19 UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=... 98 1e-19 UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=... 98 1e-19 UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=... 97 3e-19 UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=... 96 5e-19 UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=... 95 7e-19 UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=... 95 9e-19 UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=... 94 1e-18 UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=... 94 3e-18 UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=... 93 4e-18 UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=... 92 8e-18 UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=... 91 2e-17 UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=... 91 2e-17 UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=... 91 2e-17 UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=... 90 4e-17 UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=... 89 7e-17 UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subu... 88 9e-17 UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=... 87 2e-16 UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=... 86 6e-16 UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2... 85 9e-16 UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=... 84 1e-15 UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=... 84 3e-15 UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=... 83 3e-15 UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=... 83 3e-15 UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=... 83 4e-15 UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=... 82 6e-15 UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=... 81 1e-14 UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=... 80 2e-14 UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Lept... 80 2e-14 UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease ... 80 2e-14 UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=... 79 7e-14 UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax... 78 1e-13 UniRef50_Q8F836 Holliday junction resolvasome endonuclease subun... 77 3e-13 UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax... 76 4e-13 UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Acti... 76 5e-13 UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=... 76 6e-13 UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=... 74 2e-12 UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=... 72 5e-12 UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax... 72 9e-12 UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=... 71 1e-11 UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (H... 71 2e-11 UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actin... 70 4e-11 UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subu... 69 5e-11 UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kyto... 69 7e-11 UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax... 68 1e-10 UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=... 67 2e-10 UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=... 64 3e-09 UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=... 63 4e-09 UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax... 61 2e-08 UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax... 60 3e-08 UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subun... 57 2e-07 UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=... 53 3e-06 UniRef50_B6ALY9 Probable crossover junction endodeoxyribonucleas... 52 8e-06 UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclea... 49 6e-05 UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanoth... 42 0.012 UniRef50_A6QSQ2 Predicted protein n=1 Tax=Ajellomyces capsulatus... 41 0.013 >UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=267 Tax=cellular organisms RepID=RUVC_ACTP2 Length = 192 Score = 234 bits (598), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 127/158 (80%), Positives = 136/158 (86%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IILGIDPGSRVTGYGVIRQ GR L YLGSG IRT VDDLP+RLK IYAGVTEIITQF Sbjct: 1 MPIILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVDDLPTRLKRIYAGVTEIITQFH 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FAIEQVFMAKNADSALKLGQARG AIVAAVN +LPVFEYAAR VKQTV GIGSA+K Sbjct: 61 PDMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKI 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 QVQ MV +L+L + PQADAADALAIAITH H Q+++ Sbjct: 121 QVQDMVTRMLQLSSKPQADAADALAIAITHAHSIQHSL 158 >UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Gammaproteobacteria RepID=RUVC_PSEHT Length = 174 Score = 208 bits (529), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 110/173 (63%), Positives = 133/173 (76%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGSR+TGYGV+ G + +YLGSGCI+ + RLK+IY G+T++I QF Sbjct: 1 MAIILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKLADHEFHIRLKMIYQGITQLIEQFS 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ FAIE+VFMA N DSALKLGQARG AIV A +LPVFEY+ARQ+KQ VVG G A+K+ Sbjct: 61 PETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKT 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QVQHMV+ +LKLP PQADAADALAIAI H H QN ++++ S RGRLR Sbjct: 121 QVQHMVKNILKLPGTPQADAADALAIAICHAHSEQNLIKLAGSASKTVRGRLR 173 >UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Gammaproteobacteria RepID=RUVC_PSYWF Length = 194 Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/162 (58%), Positives = 114/162 (70%), Gaps = 7/162 (4%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQF- 59 MAII+GIDPGSR+TGYG+I Q G L YL +G IRT ++P RLK I+ G+T I TQ+ Sbjct: 1 MAIIIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKEMPERLKRIFQGLTRI-TQYH 59 Query: 60 -----QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 +P + A+EQVFMA+N DSALKLGQARG AI A V +L V EY ARQ+KQ+V G Sbjct: 60 LKYSDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGY 119 Query: 115 GSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 G+A+K QVQ MV +LKL PQ DAAD LA AI H H S + Sbjct: 120 GAADKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHS 161 >UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Geobacter sp. FRC-32 RepID=RUVC_GEOSF Length = 173 Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/150 (57%), Positives = 105/150 (70%), Gaps = 1/150 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR+TGYG++ + G +L ++ +G I T D PSRLK IY ++EII ++PD Sbjct: 3 ILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYRPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E +F + N SALKLGQARG AIVA VN L VFEY A QVKQ VVG G A K QV Sbjct: 63 AVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152 Q M++ LL LP Q DA+DALA+AI H H Sbjct: 123 QQMIKVLLNLPEIAQEDASDALAVAICHAH 152 >UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=21 Tax=Proteobacteria RepID=RUVC_AZOSE Length = 185 Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/153 (56%), Positives = 104/153 (67%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILG+DPG R+TG+GVI ++G QL Y+ SGCIRT+ +LP RLK + GV E++ + PD Sbjct: 12 ILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTRDGELPGRLKTLLDGVREVVAAYTPDQ 71 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E+VF+ N S L LGQARG I AV+ +LPV EY A QVKQ VVG G A K QVQ Sbjct: 72 VAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQVQ 131 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 HMV+ LL L P DAADALA AI H H Q Sbjct: 132 HMVQRLLALDGCPSPDAADALACAICHAHGGQG 164 >UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=7 Tax=Gammaproteobacteria RepID=RUVC_DICNV Length = 176 Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 89/154 (57%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Query: 1 MAI--ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 MAI ILGIDPGSR+TGYG+I G + Y+ SGCIR +P RL I+ G+ E++ Q Sbjct: 1 MAICRILGIDPGSRITGYGIIDVRGTAIDYVDSGCIRLATQLMPQRLMTIHQGIFELVQQ 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P FAIE +F+ KN +SALKLGQARGVAI AAV L + EYAA+ +KQ VVG G A+ Sbjct: 61 YHPQQFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCH 152 K QVQHMV+ LL Q+DAADALA+AITH H Sbjct: 121 KIQVQHMVKILLNRQGAIQSDAADALAVAITHAH 154 >UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Deltaproteobacteria RepID=RUVC_PELCD Length = 161 Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 85/150 (56%), Positives = 108/150 (72%), Gaps = 1/150 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG+R+TGYG+I ++G +L ++ +G I T+ D L RLK IY G++ +I + P Sbjct: 3 ILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYAPT 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E++F+AKNA SALKLG ARGVA++A VN LPV EY A +VKQ VVG G A K QV Sbjct: 63 GVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKPQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152 Q MVR LL LP Q DA+DALA+AI H H Sbjct: 123 QQMVRVLLNLPEIAQEDASDALAVAICHAH 152 >UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=4 Tax=Moraxellaceae RepID=C8PU79_9GAMM Length = 200 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 7/163 (4%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR--TKVDDLPSRLKLIYAGVTEIITQ 58 M+I +GIDPGSR+TGYG+IR G +L +L +G I ++ + +P RLK I+ G++ I+ Sbjct: 1 MSIFIGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEH 60 Query: 59 FQ-----PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVG 113 +Q P AIEQVFMA N D+ALKLGQARG AI A V ++L V EY ARQ+KQ V G Sbjct: 61 YQKYTNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCG 120 Query: 114 IGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 G+A+K Q+Q MV LL L PQADAAD LA AI H + SQ Sbjct: 121 YGAADKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQT 163 >UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=182 Tax=Proteobacteria RepID=RUVC_BURM7 Length = 180 Score = 161 bits (408), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 108/176 (61%), Gaps = 7/176 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPG RVTG+GVI G QL+Y+ SG I+T DLP+RL IY GV+ +I + PD Sbjct: 3 ILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPTADLPTRLGTIYDGVSTLIREHTPDQ 62 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE+VF+ N S L LGQARG AI V+ LPV EY A Q+KQ VVG G A K Q+Q Sbjct: 63 AAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKEQMQ 122 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCHVSQN-------AMQMSESRLNLARGRL 172 MV LL L P DAADAL +AI H H A +++ L + RGRL Sbjct: 123 EMVARLLSLSGRPGTDAADALGMAICHAHGGNTLNTLGGIAPALAKKGLRVRRGRL 178 >UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Gammaproteobacteria RepID=RUVC_ALCBS Length = 172 Score = 161 bits (408), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 94/173 (54%), Positives = 124/173 (71%), Gaps = 1/173 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MA+ILGIDPGSR TGYGV+ VG + + G I T ++P RL I+AG+ +++ ++ Sbjct: 1 MALILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTSHKEIPPRLGEIFAGIDQVVKEYG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +IE+VFMA+NADSALKLGQARG AI A + +PVFEY+ARQVKQ VVG G AEK+ Sbjct: 61 PAEVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKN 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QV MV+ LLKL PQ DAADALAIA+ H H+ + +M+ + ++ RGR+R Sbjct: 121 QVGEMVKYLLKLDQRPQEDAADALAIALCHAHMRLSLARMAGA-TSVRRGRVR 172 >UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=18 Tax=cellular organisms RepID=RUVC_ACISJ Length = 186 Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/166 (50%), Positives = 107/166 (64%), Gaps = 7/166 (4%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-------VDDLPSRLKLIYAGVTEII 56 ILGIDPG + TG+GV+ G +L Y+ SG +RT + DLP RLK+++ GV+E+ Sbjct: 3 ILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSEVA 62 Query: 57 TQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGS 116 ++QP A+E +F+ N S L LGQARG A+ A VN LPV EY A Q+K+ VVG G Sbjct: 63 ARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGHGR 122 Query: 117 AEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 A KSQVQ MVR LL+LP P DAADAL +AITH H ++ E Sbjct: 123 AAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAHAGAAMARVGE 168 >UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=5 Tax=Gammaproteobacteria RepID=A4A9Q9_9GAMM Length = 172 Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/137 (56%), Positives = 101/137 (73%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGS+ TG+G+I + + SY+ SG IR LP RL++I V E++ Sbjct: 1 MAIILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGALPERLRIIAESVAELVELHG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P ++EQVF+AK+AD+ALKLGQARG AIV V + L V EY+ARQ+KQ+VVG G+A+K+ Sbjct: 61 PTELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKA 120 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQHMV+ LLKLP PQ Sbjct: 121 QVQHMVKALLKLPGAPQ 137 >UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHV9_9GAMM Length = 171 Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/136 (57%), Positives = 98/136 (72%), Gaps = 1/136 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGSR TG+G+I Q G ++ Y+ SG IR K L RL LIY V+EII QF P Sbjct: 1 MILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSP 60 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIEQVFM + DSALKLGQARG AI+A + V+EYAAR+VKQ+V G G+A+K Q Sbjct: 61 ACMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQ 120 Query: 122 VQHMVRTLLKLPANPQ 137 + +MV+++LKLP PQ Sbjct: 121 IGYMVKSILKLPGVPQ 136 >UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxyribonuclease RuvC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYN7_9BACT Length = 155 Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 2/151 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG+ + GYGVI + G ++ + G I+T K + P RLK IY GVTE+IT ++PD Sbjct: 3 ILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYKPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E+VF KN +A+K+G+ RG+ + A +P+ EYAAR VK+ V G G+A K +V Sbjct: 63 HMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKGKV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCH 152 Q MV+ +L LP PQ DA+DALAIAI H H Sbjct: 123 QEMVKAILGLPEIPQPEDASDALAIAICHGH 153 >UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=Gammaproteobacteria RepID=RUVC_XYLFT Length = 173 Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/165 (52%), Positives = 108/165 (65%), Gaps = 2/165 (1%) Query: 1 MAIILGIDPGSRVTGYGVIR--QVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG GVI + G + + RLK + G++ +I + Sbjct: 1 MTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEE 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P AIE+VFM+KNADSALKLGQARGVAI A V ++LPV EYAARQ+K VVG G A+ Sbjct: 61 YSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSES 163 K Q+QHMV +L L Q+DAADALA+AITH HVS A ++ S Sbjct: 121 KQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQRLGVS 165 >UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Bacteria RepID=RUVC_PELTS Length = 164 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQP 61 +I+G+DPG+ +TGYG++ G + + + GCIRT P+ RL+ +Y + EII + +P Sbjct: 2 LIMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++FA+E++F KN +AL +GQARGV ++AA LPVFEY QVKQ V G G A K+Q Sbjct: 62 EHFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKTQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCH 152 VQ+MV+T+L LP P D ADALA+AI H H Sbjct: 122 VQYMVKTILALPEVPAPDDVADALAVAICHAH 153 >UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=beta proteobacterium KB13 RepID=B6BW71_9PROT Length = 175 Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 76/171 (44%), Positives = 113/171 (66%), Gaps = 4/171 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQFQP 61 ++GIDPG R+TGYG++ ++ +Y+ SG I+T + LP RLK+I+ V+EI+++ QP Sbjct: 6 VIGIDPGLRITGYGIVDCENKKTTYITSGVIKTTSEKLPYPERLKIIFDEVSEIVSKHQP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + IE+ F+ NA+S+L LGQARGVA+ A + +L ++EY A Q+K++VVG G AEK Q Sbjct: 66 NQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNGHAEKIQ 125 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 VQ MV+ LL LP D++DALA + H V Q + S +N GR+ Sbjct: 126 VQSMVQKLLNLPEVLGPDSSDALACVLCHNQVMQ--INQDNSPINFKGGRI 174 >UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA55_CHRVI Length = 178 Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/149 (51%), Positives = 94/149 (63%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPGSR TG+GVI G + SGCIR P RL LI+ V I+ ++QP Sbjct: 11 ILGIDPGSRNTGFGVIDTDGHHSVRVASGCIRVGEHPWPDRLGLIFDQVAAIVAEYQPHE 70 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+EQ+ A++ +ALK+GQARG + A + V EY+ + VK VVG G A+KSQVQ Sbjct: 71 MAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGADKSQVQ 130 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCH 152 HMVR LL LP P D ADALAIA+ H H Sbjct: 131 HMVRVLLALPETPGEDEADALAIALCHAH 159 >UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Proteobacteria RepID=RUVC_THIDA Length = 171 Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPG R+TG+G+I Q G++L+Y+ SG +++ LP+RL +++ G+ E+I ++PD Sbjct: 3 ILGIDPGLRLTGFGLIEQTGQKLAYVASGVVKSGEGSLPARLGILFGGINEVIATYRPDT 62 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E VF+ N S L LGQARG AI AAV+ +L V EY A Q+KQ VVG G A K+QVQ Sbjct: 63 CAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKTQVQ 122 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 MV+ LL LP P ADAADALA AITH H S+ Q S + L GRL Sbjct: 123 EMVKRLLALPIAPTADAADALACAITHAHGSRLGAQ-STAGYRLKGGRL 170 >UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=20 Tax=Gammaproteobacteria RepID=RUVC_FRAT1 Length = 171 Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +ILGIDPGSR+TG+GVI+ ++ Y+ SGCIR P RLK I G+T+II + P Sbjct: 2 VILGIDPGSRITGFGVIKVQDNKIYYVASGCIRITEITTPKRLKQIADGITQIINIYAPT 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIEQ+FM +N A+KLGQARGVA+ L V EY+A+Q+KQ VVG G A KSQV Sbjct: 62 EAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKSQV 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS-ESRLNLAR 169 QHMV++LL L P DAADALAIAI H H S++ ++S SR++ R Sbjct: 122 QHMVQSLLGLSKKPPEDAADALAIAICHYHSSKSLAKISGASRVSQKR 169 >UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Proteobacteria RepID=RUVC_XANOP Length = 174 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 1 MAIILGIDPGSRVTGYGVIR--QVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG G+I + GR + I D RLK + G+ E+I Sbjct: 1 MTRILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIET 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++PD AIE+VFM K+A SALKLG ARG AI A V ++LPV EYAA +VK +VG G A+ Sbjct: 61 YRPDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNA 157 K QVQHMV +L L Q DAADALA+AITH HV A Sbjct: 121 KVQVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159 >UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Magnetococcus sp. MC-1 RepID=RUVC_MAGSM Length = 180 Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 77/153 (50%), Positives = 102/153 (66%), Gaps = 3/153 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPGS VTG+GVI +G++ + G IR + LP RL I+A + +I + QP Sbjct: 9 VIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQRLQPH 68 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E+VF+++N SALKLG ARG AIVA LP+ EY A QVK+ VVG G AEK+Q+ Sbjct: 69 EMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRAEKNQM 128 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 Q M+R LL L P DAAD LAIA+ CH++Q Sbjct: 129 QEMMRMLLNLDKKPAQDAADGLAIAM--CHLNQ 159 >UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2T3_9GAMM Length = 178 Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 112/152 (73%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M ILGIDPGSR TG+G+I G+++ ++ +G + + RLK I+ G+T++I ++Q Sbjct: 1 MPRILGIDPGSRKTGFGIIELDGKKIKHVINGRLMVGDGEFADRLKQIFEGLTDLIDRYQ 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE+VF+ KNADSALKLGQARG AI AAV+++L V EY+A Q+K+ VVG G A+K Sbjct: 61 PEMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKD 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCH 152 QVQ+M+ +L LP P+ DAADALA A+TH + Sbjct: 121 QVQYMMSVILSLPEVPEEDAADALACALTHAN 152 >UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RUVC_WIGBR Length = 161 Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 74/156 (47%), Positives = 107/156 (68%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M+II+GIDPGS VTGYG+I+ L ++ SG I K D RLK+IY + II +F+ Sbjct: 1 MSIIIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIFLKKHDFKKRLKIIYICIKNIINKFK 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P YF IEQ+F +KN S LKLGQA A +AA+N ++ +FEYA++++K+ +VG G A+K Sbjct: 61 PKYFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKL 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 QV++ V ++L L + D +DALA+AITH ++ N Sbjct: 121 QVKNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156 >UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RUVC_NATTJ Length = 161 Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQP 61 II+G+DPG GYG+I G +L L G +RT D+ + RL+ IY GV+ +I++F P Sbjct: 2 IIMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFSP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E +F AKN+ +A+K+GQA+GV ++AA + L +FEY QVKQ V G GSA K Q Sbjct: 62 NTVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITH 150 VQ MV+ +L L P+ DAADALA+++ H Sbjct: 122 VQKMVKQILSLDKIPKPDDAADALAVSLCH 151 >UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=Bacteria RepID=RUVC_CLOCE Length = 166 Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 2/165 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 II+GIDPG +TGYGV++ G + S L I T RL ++Y + ++I +F+P Sbjct: 2 IIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +IE++F KN +AL +G RGVA++AA + +FEY QVKQ+VVG G AEK+Q Sbjct: 62 DAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRL 165 VQ MV+ +L LPA P+ D ADALA+AI H + + + R Sbjct: 122 VQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMGALLGNDRF 166 >UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJL7_ACIF5 Length = 185 Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/150 (55%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 4 ILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 I+GIDPGS TGYG+I +L ++ GC+ R+ IY + +II + P+ Sbjct: 22 IIGIDPGSLRTGYGIIESDAAGELRHVAHGCLNVSGQPFLERIGAIYRELKQIIGTYHPE 81 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIEQVFMA+NADSALKLGQARG A+VA + LPV EY A Q+K+ VG G A K QV Sbjct: 82 EAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAAKEQV 141 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152 Q MVR LLKL NPQADAADALA AI H H Sbjct: 142 QSMVRWLLKLSENPQADAADALACAICHAH 171 >UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Bacteria RepID=RUVC_RUBXD Length = 179 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ G+GV+RQ G +L Y+ G I T +P RL ++AGVTE+I ++P Sbjct: 9 VILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E++F N +A+ +GQARGVA++AA + VFEY QVKQ + G A+K Q Sbjct: 69 SAVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAM 158 VQ MVR LL L + P+ DAAD LAIAI CH + M Sbjct: 129 VQEMVRALLGLRSIPRPDDAADGLAIAI--CHAFSHRM 164 >UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Gammaproteobacteria RepID=RUVC_THICR Length = 172 Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 70/134 (52%), Positives = 89/134 (66%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPGSR TG+G+I +Y+ SG IR + RLK I+ V +II Q+QP Sbjct: 7 ILGIDPGSRKTGFGIIESGRFHPNYVSSGVIRVEKLTGAQRLKTIFESVCQIIDQYQPHV 66 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE+VF+ KN SA+KLGQARGV + AA +E+P+ EY Q+K T+VG G A K QVQ Sbjct: 67 MAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGHATKDQVQ 126 Query: 124 HMVRTLLKLPANPQ 137 MV+ LLKL +PQ Sbjct: 127 FMVQNLLKLTESPQ 140 >UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Clostridia RepID=RUVC_THETN Length = 165 Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG GYGV+ + S + G I T D RL +Y G+ +II ++P+ Sbjct: 3 VLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYRPE 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++F KN+ + + +G+ RG++I+AAVN + V+EY QVKQ VVG G AEK QV Sbjct: 63 IVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQQV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 Q MV+ LL L P+ D ADALA+AI HCH S N ++ Sbjct: 123 QQMVKVLLNLDEIPKPDDVADALAVAICHCH-SNNMLE 159 >UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_GEOLS Length = 178 Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPGSR+TGYG++ Q G +L +L +G + T K D P RL+LI+ G++ +I ++ PD Sbjct: 3 VLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYAPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E V++++N +ALKLGQARG AI AAV+ LPVFEY A QVKQ VVG G A K QV Sbjct: 63 AVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKEQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 Q MV+ LL LP QADA+DA+A+AI H + Q +Q Sbjct: 123 QKMVKALLGLPEIAQADASDAVAVAICHINSYQLRLQ 159 >UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRB0_SYNAS Length = 181 Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 97/153 (63%), Gaps = 3/153 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPGS VTG+G++ Q+ + + G IR K S L+ IY + ++ + QPD Sbjct: 25 VLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVEREQPD 84 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F KN S +K G RGVAI+A LPVFEY ++K+ VVG G AEK QV Sbjct: 85 AVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAEKIQV 144 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 Q+M++ ++KL P ADA+DA+A+AI CH++ Sbjct: 145 QNMIKVIMKLSELPPADASDAIAVAI--CHLNH 175 >UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Treponema RepID=RUVC_TREPS Length = 196 Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 101/160 (63%), Gaps = 4/160 (2%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS--RLKLIYAGVTEIITQ 58 ++II+GIDPG TGYGVI G L L G I T+ + PS RL+ I+ + ++I+ Sbjct: 16 VSIIVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQ-PSAARLRHIFDTLQQVISI 74 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +QP Y A+E ++ AKN SAL + QARGV ++A Q + V EYA +K+ + GI AE Sbjct: 75 YQPQYCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAE 134 Query: 119 KSQVQHMVRTLLKLPANPQAD-AADALAIAITHCHVSQNA 157 K QVQH+V+ LL L P D AADALA+A+TH H ++ Sbjct: 135 KRQVQHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSS 174 >UniRef50_D2UF38 Putative holliday junction resolvasome, endonuclease subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2UF38_XANAL Length = 207 Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/166 (51%), Positives = 107/166 (64%), Gaps = 16/166 (9%) Query: 4 ILGIDPGSRVTGYGVIR--QVGR-------QLSYLGSGCIRTKVDDLPSRLKLIYAGVTE 54 ILGIDPGS+ TG G+I GR L LG G D P RLK + G+ Sbjct: 38 ILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEG-------DFPQRLKRLLHGLDA 90 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 +I +++P AIE+VFM K+AD+ALKLG ARG AI A V ++LPV EYAA+++K +VG Sbjct: 91 LIEEYRPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGK 150 Query: 115 GSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM 160 G+AEK QVQHMV +L L QADAADALA+AITH HV A ++ Sbjct: 151 GAAEKQQVQHMVGLMLSLSGKLQADAADALAVAITHAHVRATAQRL 196 >UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=cellular organisms RepID=RUVC_BREBN Length = 166 Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 2/151 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG + G+GV+ + G QL + G I+T+ +P RLK I+ + ++ ++PD Sbjct: 3 ILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYRPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 ++E++F KN +A +GQARGV I+AA +PV+EY QVKQ V G G AEK Q+ Sbjct: 63 EMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKKQI 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCH 152 Q M + LL+L P+ D ADAL IAITH Sbjct: 123 QEMTKLLLRLKEVPKPDDVADALGIAITHAQ 153 >UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQQ7_DESBD Length = 173 Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 95/153 (62%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IILG+DPGSR GYG++R+ LS + +G +R + + +RL L+Y ++E++ P Sbjct: 6 IILGVDPGSRCMGYGLVRERSGVLSLVEAGVVRPGEEAMSARLGLMYTRISELLHAHSPH 65 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF A+N+ SALKLGQARG + A VF Y VK+++VG G AEKSQV Sbjct: 66 AVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGRAEKSQV 125 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 MV LL + + DA DALA+AI H + S+ Sbjct: 126 SFMVGQLLGVKPDWAEDAGDALALAICHLNHSR 158 >UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_HALHL Length = 167 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 2/137 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQF 59 M ILGIDPGSRVTGYG++ GR + G +R + L RL I+ G+ E+I + Sbjct: 1 MTRILGIDPGSRVTGYGIVDD-GRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEH 59 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P A+EQVF+ +NAD+ALKLG ARG A+ A V LPV EYA ++KQ + G G A+K Sbjct: 60 RPQEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADK 119 Query: 120 SQVQHMVRTLLKLPANP 136 +QV +MVR LL+L +P Sbjct: 120 TQVGYMVRALLRLRTSP 136 >UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Ruminococcaceae RepID=D1PPB4_9FIRM Length = 194 Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 2/163 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG + G+GV+ VG + S +G G I T+ D RL IY V ++ ++ P+ Sbjct: 32 VLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRRYAPE 91 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +IE+++ N + + + +ARGV ++AA +P++EY QVKQ + G G A K Q+ Sbjct: 92 ALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAVKKQI 151 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 Q M R +L L P+ D ADAL +AI HCH S++ + ++ R Sbjct: 152 QEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRSRLMGTQPR 194 >UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Bacteria RepID=C3JAC1_9PORP Length = 192 Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+++ GYG+IR Q L G I +K +D RL I+ +T +I +F P Sbjct: 8 IILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIEEFLP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E F KN S LKLG+A+G A++A + + LP+ EYA ++KQ++ G GSA K Q Sbjct: 68 DEMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSASKEQ 127 Query: 122 VQHMVRTLLKLPA---NPQADAADALAIAITHCHVSQNAMQMSE 162 V M++ +L +PA DA D LA+A+ H + + N + S+ Sbjct: 128 VAAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSNTLASSD 171 >UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Clostridia RepID=RUVC_HALOH Length = 165 Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 4/151 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT--KVDDLPSRLKLIYAGVTEIITQFQ 60 +ILG+DPG + GY +I + G + + G I T K++ + RLK+I+ + II ++ Sbjct: 2 VILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESV-DRLKIIHTDMVNIINKYN 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E++F KN +A+++GQARGV ++A L ++EY QVKQ V G G A KS Sbjct: 61 PDQMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKS 120 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITH 150 QVQ MV+ LL L P+ D ADALAI+I H Sbjct: 121 QVQRMVKALLNLNEIPKPDDVADALAISICH 151 >UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bacteria RepID=RUVC_CLOD6 Length = 169 Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG + GYG+I + + G + T ++ RL+L+Y G+ I+ + Sbjct: 2 IILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYNI 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +E++F KN +A+ + QARGV ++A + PV+EY QVKQ VVG G A+K+Q Sbjct: 62 DEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 VQ MV + L L P+ D ADALA+AI H H ++ Sbjct: 122 VQQMVTSFLSLKKVPKPDDVADALAVAICHAHSNK 156 >UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=69 Tax=Bacteroidetes RepID=RUVC_CYTH3 Length = 200 Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 67/155 (43%), Positives = 98/155 (63%), Gaps = 4/155 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+ V GYG+I G QL+ + G I +K D +L I+ ++ +I ++ P Sbjct: 13 IILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHP 72 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F N S LKLG+A+GVAI AA+++++P+FEYA +++KQ+V G G+A K Q Sbjct: 73 DEMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQ 132 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQ 155 V M+ +L P+ DA DAL +A+ CH Q Sbjct: 133 VAAMLSKILFFQEIPKLLDATDALGVAV--CHYFQ 165 >UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A616_GEMAT Length = 181 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/137 (46%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQ 60 +++LGIDPG+ VTGYGV+ GR + + G IRT D LPSRL I+ GV E+I + + Sbjct: 5 SLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELIARHR 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +IE VF A+N + L LG ARGV ++A EL + EYA ++K+ + G G A K Sbjct: 65 PDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGGATKE 124 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQ+MV LL L P+ Sbjct: 125 QVQYMVARLLHLKHAPE 141 >UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Bacteroidetes RepID=C7PP44_CHIPD Length = 202 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/164 (42%), Positives = 104/164 (63%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG+ V GYG+I G + S L ++ ++ D RL+LI+A V E+I + +P Sbjct: 23 IILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIREHKP 82 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE F KN S LKLG+A+GVAI A+ +PV EYA ++VKQ++ G G+A+K Q Sbjct: 83 VSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNADKEQ 142 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMSESR 164 + M++ +L P+ DA+DALA+A+ CH Q + + ++R Sbjct: 143 IWQMLQRILHFNERPEFLDASDALAVAV--CHFFQESSVIPDTR 184 >UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Dehalococcoides RepID=RUVC_DEHSC Length = 167 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/157 (48%), Positives = 96/157 (61%), Gaps = 4/157 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLG-SGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG+ V GYG+I +L+ +G S +P RL IY G+ E+I +QPD Sbjct: 3 ILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E F KN SAL +G+A+ VA++AA N LPV EY+ +K V G G+A K Q+ Sbjct: 63 EVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKEQI 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAM 158 Q MVR LL L PQ DAADALA+AI CH SQ A Sbjct: 123 QEMVRLLLNLAEIPQPNDAADALAVAI--CHHSQRAF 157 >UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Bacteria RepID=RUVC_CALS8 Length = 166 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQP 61 +LGIDPG +TGYG+I + G + + G I T S RL +Y + II+ +QP Sbjct: 3 VLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE++F +KN+ +A+ +G+ARGV I+ + L ++EY QVKQ++ G G A+K+Q Sbjct: 63 DVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKTQ 122 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAM 158 +Q MV++LL L P+ D ADALA+A+ H S + + Sbjct: 123 IQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVL 160 >UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bdellovibrio bacteriovorus RepID=RUVC_BDEBA Length = 168 Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILG+DPGSR+TG+GV+R ++ ++ G I DD P R+ + + E++ +++P Sbjct: 4 VILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKYKP 63 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + IE++F+ KNADSA KLG ARGV + A V EYA R VK+ V G G A K Sbjct: 64 EQVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASKED 123 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHC 151 VQ +++ +L L + DA+DALA+A H Sbjct: 124 VQAILKVMLSLKTISRIDASDALAMACYHA 153 >UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RUVC_CHLT3 Length = 186 Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 3/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LG+DPGS VTGYGVI + IR D P R+K IY + ++I ++P Sbjct: 2 ITLGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E F KNA SALKLGQ RG I+ A+N L EY+ R+VK++V G G+A K Q Sbjct: 62 TQLSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 V +MV+ +L + A D +DALAIA+ H +M SE + Sbjct: 122 VAYMVKKMLSIDDEKMALDTSDALAIALCG-HFKSASMAASEFK 164 >UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Methanomicrobiales RepID=Q2FQ00_METHJ Length = 164 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 7/160 (4%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT--KVDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GYGV+ + GCI T K D P RL IY + +I + P Sbjct: 8 VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A E++F ++N +A+++ +A+GV I+AA ++PVFEY +QVK + G G A+K Q Sbjct: 68 ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQM 160 +Q M+ LL+L PQ DAAD LA+A+ CHV N M+M Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALAL--CHV--NWMRM 163 >UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RUVC_THEYD Length = 156 Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 92/156 (58%), Gaps = 3/156 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPGSR GYG++ +Q+ + + I D LP RLK IY + ++ ++ PD Sbjct: 3 VIGIDPGSRHFGYGIVD--AKQMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKYSPD 60 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E++F+ K S+ LG AR +A + A +E+PV+EY++ ++K+ + G G A K QV Sbjct: 61 EMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHKVQV 120 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 + MV L + D ADALA+AI H + N M Sbjct: 121 KSMVYNFLHIDKKISYDCADALAVAICHINSKTNFM 156 >UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Thermotogaceae RepID=RUVC_FERNB Length = 166 Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG + GYGV+ ++G +++Y+ G I+T K + RL IY V EII ++ P+ Sbjct: 3 ILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYNPE 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE ++ KN +A+ +G+ARGV ++A + +P E+ QVK TV G G AEK+Q+ Sbjct: 63 LVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKTQI 122 Query: 123 QHMVRTLLKLPANPQ 137 Q +++ LLKL P+ Sbjct: 123 QKVMKILLKLNEIPK 137 >UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=61 Tax=Alphaproteobacteria RepID=RUVC_BRASB Length = 175 Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/165 (48%), Positives = 107/165 (64%), Gaps = 4/165 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQFQP 61 I+GIDPG R TG+GVI G +L Y+G G + DDLP +RL I+ G+ +++ FQP Sbjct: 12 IIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPP-DDLPLANRLLAIHEGLAKVLNDFQP 70 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+EQ F+ K+ + LKLGQARG+A++A + V EYA QVK+TVVG G A+K Q Sbjct: 71 LEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGHADKGQ 130 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQN-AMQMSESRL 165 + M++ LL P ADAADALAIAITH H Q A++M + L Sbjct: 131 IAVMLKILLPKAEPPSADAADALAIAITHAHHRQGQALRMKVAGL 175 >UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=10 Tax=Alphaproteobacteria RepID=RUVC_NITWN Length = 172 Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/160 (46%), Positives = 102/160 (63%), Gaps = 11/160 (6%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG R TG+GV+ G +L ++G G + T+ L SRL I+AG+ ++ QF+P Sbjct: 8 ILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVLDQFRPS 67 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIEQ F+ K+ + LKLGQARGVA++A + V EYA QVK+TVVG G A+K+Q+ Sbjct: 68 EAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGHADKAQI 127 Query: 123 QHMVRTLLKLPANPQADAADALA-----IAITHCHVSQNA 157 Q M++ LL P+AD A A IAITH H ++A Sbjct: 128 QAMLKILL-----PKADPKSADAADALAIAITHAHHRKSA 162 >UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Desulfovibrionales RepID=RUVC_DESMR Length = 169 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/154 (46%), Positives = 96/154 (62%), Gaps = 3/154 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++R+ L + +G +RT D PSRL +I+ V E+I + P Sbjct: 8 IILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E VF++KNA +ALKLGQARG A+ A L V Y +KQ++VG G AEKSQ Sbjct: 68 AEVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQ 127 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 V MV +L DA DALA A+ CH++Q Sbjct: 128 VAFMVARVLACRETFAVDATDALAAAV--CHLNQ 159 >UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Chlorobiaceae RepID=RUVC_CHLCH Length = 192 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV++ S L +G IR + P R+ +I + ++I +FQP Sbjct: 2 IVLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E F++ N +ALKLGQ RG I V LP++EYA R+VK + G G+A K Q Sbjct: 62 ERVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAI 148 V MV +L L P+ D DAL IA+ Sbjct: 122 VAFMVSRMLSLHTVPKPHDVTDALGIAL 149 >UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Salinibacter ruber DSM 13855 RepID=RUVC_SALRD Length = 179 Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 4/168 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++ G + + IR DD P+RLK IY + ++I P Sbjct: 2 IILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FA+E +N S LKLG+A+ A++AA+N++LPV +Y ++VK++V G G+A K Q Sbjct: 62 DEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKKQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLNLA 168 V M+ ++L A D ADALAIA+ CH +++A +S A Sbjct: 122 VGFMIESILSAREQTFAHDTADALAIAL--CHGNRDAHDDGDSYTGWA 167 >UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Desulfovibrionaceae RepID=RUVC_LAWIP Length = 168 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF 59 M ++GIDPGSR TG+G++ +V L + G I+ + RL I+ ++ II ++ Sbjct: 1 MISVIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKY 60 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P ++EQVF A+N +ALKLGQARG A+VA NQ L + +Y A +K+T+VG G A K Sbjct: 61 KPVEASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATK 120 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITH 150 QV MV L + + D +DALA AI H Sbjct: 121 EQVSFMVGRSLGVKPDWPIDTSDALATAICH 151 >UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Coriobacteriaceae RepID=C8WP55_EGGLE Length = 192 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 84/138 (60%), Gaps = 3/138 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQFQP 61 ILGIDPG TG+G++ Q G +L+ GC+ T DLP RL+ I+ + +I +F+P Sbjct: 8 ILGIDPGLANTGWGIVEQRGPRLACTAYGCVST-AKDLPLAQRLRKIHEQMAAVIARFEP 66 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 IE V+ N SA GQARG A+VA ++L V E++ Q+K VVG GSAEK Q Sbjct: 67 ACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTGSAEKDQ 126 Query: 122 VQHMVRTLLKLPANPQAD 139 VQ+MVR LL L P+ D Sbjct: 127 VQYMVRQLLALEDIPRPD 144 >UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Alphaproteobacteria RepID=RUVC_GRABC Length = 178 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG R TG+GVI G +L ++ G I T + +P+RL++++ +T ++ + PD Sbjct: 14 MLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLVTYHPD 73 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E+ ++ +N + LKLG ARGVA++A + +PV EY A+ VK VVG G A K QV Sbjct: 74 EAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGATKDQV 133 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCH 152 Q MV+ LL +ADAADALA+AI H H Sbjct: 134 QMMVQRLLPGATLKRADAADALAVAICHAH 163 >UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Alphaproteobacteria RepID=RUVC_ZYMMO Length = 167 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LG+DPG TG+G I G +LS++ +G IRT L RL L++ + +I QP Sbjct: 2 IFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+V NA S LKLGQARG+A+ + L V EY VK+ VVG GSA+K Q Sbjct: 62 EMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCH 152 VQ MV LL DAADALA+AITH H Sbjct: 122 VQAMVSRLLPGVKLAGPDAADALAVAITHAH 152 >UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGL8_KOSOT Length = 168 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG GYG+I G ++S +G G I+TK + +P+RL IY + EI+ +++PD Sbjct: 8 ILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEIVEEYRPD 67 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++F +N +A+++G+ARGV ++ +P+FEY QVKQ+V G G +EK Q+ Sbjct: 68 EAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYGRSEKGQI 127 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVS 154 Q +++ L + P+ D A A+ CH+S Sbjct: 128 QRVMKKFLGMNETPKPDDAADAL-AVAWCHIS 158 >UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Parachlamydiaceae RepID=RUVC_PARUW Length = 168 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+++TG+GVIR G Q + GCIR L R +I GV ++I Q QP Sbjct: 6 IILGLDPGTKITGFGVIRIEGHQYVPVDYGCIRPPSHYKLSERYLVICQGVEQLIDQHQP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E +++KN SA+KLG ARGV ++AA + +P++EYA + K VVG G A K Q Sbjct: 66 HAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVVGTGRASKYQ 125 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 VQ MV+ LL L P + A CH ++ S+ Sbjct: 126 VQGMVQRLLNLSIPPTPEDAADALALAI-CHAQMPILKQSQ 165 >UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI8_9BACT Length = 159 Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 6/152 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR---TKVDDLPSRLKLIYAGVTEIITQF 59 II+G DPGSR GYG+++ R++ L +GC T+ L RLK +Y + +I+ ++ Sbjct: 2 IIIGFDPGSRYCGYGLLQIESRKV--LAAGCDVIDVTRGKTLALRLKSLYENIMQILEEY 59 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 P+ A+E +F + S LG +RGV ++A QE+PV EY+ R++K++V G G+A K Sbjct: 60 HPEIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASK 119 Query: 120 SQVQHMVRTLLKLPANPQ-ADAADALAIAITH 150 QV++M+ L L +P+ DA DALA+A H Sbjct: 120 QQVRYMINQLYPLKESPKRDDAFDALAVATCH 151 >UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RUVC_SORC5 Length = 179 Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPGSR G+G++ + G ++ ++ G I +RL I + ++I PD Sbjct: 3 VLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHAPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E +F AK+A SA KLG ARGV ++ +P+ EY VK+T+VG G+AEK+QV Sbjct: 63 AAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKAQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITH 150 ++ +L+L A P+ DAADALAIA+TH Sbjct: 123 AQVMTAVLRLAAPPRPDAADALAIAMTH 150 >UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG18_THET1 Length = 171 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LG+DPG+ + G+G++ G+ G IRT LP RL +I+ + E+I + +P+ Sbjct: 5 VLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEELKPE 64 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E+VF A+ +AL +G ARGV ++ A LP+FEY QVKQ ++G G AEK Q+ Sbjct: 65 HVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAEKKQI 124 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 Q ++ LL+L + P+ D A CH + +Q Sbjct: 125 QQFIKNLLRLESIPKPDDAADALAIAI-CHCNNYRLQ 160 >UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Alphaproteobacteria RepID=RUVC_CAUSK Length = 169 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILG+DPG R TG+GV+ G ++S++ G I + + SRL ++ G+ +I +PD Sbjct: 11 ILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVIDAHRPD 70 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E+VF+ NA S LKLG AR A++A L V EY+ R VK+ VVG G+A+K+Q+ Sbjct: 71 EAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAADKAQI 130 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHV 153 M+ LL AD ADALA+AITH ++ Sbjct: 131 GFMIARLLPTAGKTTADCADALAVAITHANL 161 >UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Acidobacteria RepID=RUVC_SOLUE Length = 166 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 4/163 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LG+D GS TG+GVI G + +G IRT RL I + +I + P+ Sbjct: 3 VLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHTPE 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E+VF A NA +ALKL RGVA++ + EY+ +VK +VVG G AEKSQV Sbjct: 63 FAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKSQV 122 Query: 123 QHMVRTLLKLP-ANPQADAADALAIAITHCHVSQNAMQMSESR 164 Q MV++LL+LP DA+DALAIAI CH + A + SR Sbjct: 123 QMMVQSLLRLPEVIASEDASDALAIAI--CHATHQATHEATSR 163 >UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease RuvC n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CBE Length = 164 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 I+LGIDPG+ TGYGV+ Q ++ L G I T L RL I+ + E+I + +P Sbjct: 2 IVLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ NA SA +GQARGV ++AA +L Y +Q+K V G G AEK Q Sbjct: 62 VAVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKLQ 121 Query: 122 VQHMVRTLLKLPANPQAD-AADALAIAITH 150 VQ MV+ LL L P+ D AADALA+AI H Sbjct: 122 VQQMVQRLLSLTELPRPDHAADALAVAICH 151 >UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=6 Tax=Coriobacteriaceae RepID=C7ML17_CRYCD Length = 174 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 59/138 (42%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQP 61 I++GIDPG TG+G++ Q G +LS GCI T L SRL IY + +I ++P Sbjct: 5 IVMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINHYRP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 IE ++ N SA GQARG A+VA ++ V EY +K VVG GSA+K Q Sbjct: 65 ACVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSADKHQ 124 Query: 122 VQHMVRTLLKLPANPQAD 139 VQ+MV +L L PQ D Sbjct: 125 VQYMVAQILGLATEPQPD 142 >UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZD1_METI4 Length = 169 Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 92/149 (61%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDP R TGYG+I G + G I T+ D +L+ IY + II ++ P++ Sbjct: 8 ILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTEHADQARKLRSIYERLLSIIQEYSPEH 67 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E + +N +A+ +G ARGVA++ +ELPVFEY+ R++K G GSA K QV Sbjct: 68 VAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGSARKEQVS 127 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCH 152 M+R LL + + P DAADALA+A+TH H Sbjct: 128 FMIRALLAMDSLPPLDAADALAVALTHVH 156 >UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Chlorobiaceae RepID=RUVC_PROA2 Length = 187 Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 4/149 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV+ G++ S + G IR + + R+K+IY + II ++ P Sbjct: 2 IVLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ +N SALKLGQ RG + +N+ L + EYA R+VK + G GSA K Q Sbjct: 62 QRLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKEQ 121 Query: 122 VQHMVRTLLKL--PANPQADAADALAIAI 148 V +M R L + P P D DAL IA+ Sbjct: 122 VSYMARHFLNIQEPIKPY-DVTDALGIAL 149 >UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N025_9BACT Length = 211 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 103/172 (59%), Gaps = 5/172 (2%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQPDY 63 +GIDPG+ GYGV+ GR++ + G I +++D +L+ I+ V ++ +++P Sbjct: 1 MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F +N S LKLG+A+GVA+ AA+++ L VFEYA ++KQ + G GSA K QV Sbjct: 61 VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLQVFEYAPTRIKQCITGRGSAPKEQVA 120 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ--MSESRLN-LARGR 171 +V ++L + P+ DA D +A+A+ H +S N + + E R L GR Sbjct: 121 ALVSSMLTIERPPRRLDATDGMAVALCHHFMSSNPLNGALGEDRFKGLGGGR 172 >UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY60_HALNC Length = 188 Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 73/152 (48%), Positives = 94/152 (61%), Gaps = 5/152 (3%) Query: 4 ILGIDPGSRVTGYGVI---RQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 ++GIDPGS G V+ R Q+ +L S ++ +RL IYA V +I Sbjct: 6 VMGIDPGSVTMGVAVLDFERGSATQI-HLQSVSLKPH-GSFTARLGAIYAEVDRLIDTHA 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FAIEQ+FM ++ +S+LKL QARGVAI AAV L V EY VKQ VVG G A+K Sbjct: 64 PDEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGRADKL 123 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCH 152 QVQHM++ LL L +P AD ADA A+A+ HC+ Sbjct: 124 QVQHMIKRLLSLSESPPADGADAAAVALCHCY 155 >UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Myxococcus xanthus DK 1622 RepID=RUVC_MYXXD Length = 191 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 5/156 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LG+DPGSR G+GV+ + +L ++G G I+ L RL+ ++ +T + +++P Sbjct: 3 VLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYRPA 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF +NA SAL LG ARGVA++AA LPVFEYA +VK+ V G+ K V Sbjct: 63 AVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAVGAGGADGKDAV 122 Query: 123 QHMVRTLLKLPAN--PQADAADALAIAITHCHVSQN 156 MVRT L+L A+ +ADA+DALA+A+ CH++ Sbjct: 123 ARMVRTFLELDASVLERADASDALAVAL--CHLNHG 156 >UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Sphingomonadales RepID=RUVC_SPHAL Length = 156 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 63/149 (42%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 IILG+DP TG+G+IR G ++S++ +G I+T LP RL + + +I P Sbjct: 2 IILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+VF+ N S LKL ARGV ++ L V +YA R VK+ +VG G A K Q Sbjct: 62 KCAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKGQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITH 150 VQ M+ LL DAADALA+AI H Sbjct: 122 VQAMLGVLLPGTKVAGPDAADALAVAICH 150 >UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Persephonella marina EX-H1 RepID=C0QT61_PERMH Length = 155 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 5/154 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 +LGIDPG+ TG+ + + G++ + SG I+T P ++IY + I +F PD Sbjct: 5 VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKK-PENFRIIYESLERTINEFSPDE 63 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F N + +KLG+ RGV ++ + +PV+EY +QVK + G G A+K V Sbjct: 64 IALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGWAKKEDVY 123 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 MV+ L + P+ D ADA+A+ HC +S+N Sbjct: 124 LMVQKLFNI--KPETNDEADAIAVGFCHC-LSKN 154 >UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Desulfovibrionales RepID=C6C066_DESAD Length = 168 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 93/150 (62%), Gaps = 4/150 (2%) Query: 8 DPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPDYFAI 66 DPG+RVTGYG++R++ Q+S + +G IRT + SRL IY+ + E+I ++ PD AI Sbjct: 12 DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71 Query: 67 EQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMV 126 E F+A N SALKLGQARG A+ A L V Y +VK +VG G A+KSQV MV Sbjct: 72 ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131 Query: 127 RTLLKLPANPQA-DAADALAIAITHCHVSQ 155 +L + A D DAL IAI CH+++ Sbjct: 132 ERILGVKNTKWANDTTDALGIAI--CHLNE 159 >UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=7 Tax=Prevotella RepID=C9LHH6_9BACT Length = 235 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ + GYGV+ ++ G I KV D+ +L I+ + II F P Sbjct: 34 VILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIGIIDSFHP 93 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F KN S LKLG+A+GVAI AA+++++P+ EYA ++K + G G A K Q Sbjct: 94 DELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGNGQASKEQ 153 Query: 122 VQHMVRTLLKLPAN---PQADAADALAIAITHCHVSQNAMQ 159 V ++ +L L DA DALA A +CH Q+ + Sbjct: 154 VADFLKRILSLKEEQMLSYMDATDALAAA--YCHYLQDGRE 192 >UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK51_9FIRM Length = 164 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 10/154 (6%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT----KVDDLPSRLKLIYAGVTEIITQFQ 60 LGIDPG+ + G+G + G +L G I T K++D RL IY + +I +++ Sbjct: 4 LGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMED---RLMKIYDELDALIKKYK 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +E++F +N +A+ +GQARG+ ++ A L + E Q+KQ V G G A+K Sbjct: 61 PDVMGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKK 120 Query: 121 QVQHMVRTLLKLPANPQAD-AADALAIAI--THC 151 QV +MV +L LP P+ D ADALAIAI THC Sbjct: 121 QVIYMVTKILNLPEPPKPDDTADALAIAICTTHC 154 >UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Planctomycetaceae RepID=D2QZ57_9PLAN Length = 186 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 98/166 (59%), Gaps = 3/166 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LG+DPG +TGYGVI VG + +G +R + L +R+ IYAG+ ++I P Sbjct: 16 VLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQSLAPT 75 Query: 63 YFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE+++ + +A+ +G ARG ++A +PV YA+ QVK+ + G G A K Q Sbjct: 76 ELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRAPKDQ 135 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMSESRLN 166 +Q+ V LKL A P+ D ADALAIA+ H H+S++ + ++ L Sbjct: 136 MQNAVCRELKLAAPPEPPDVADALAIALCHIHLSRSGLHIATPGLT 181 >UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXA4_DYAFD Length = 174 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 15 GYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAK 73 GYGVI G+Q+S + G I +K +LK I+ +T++I + PD AIE F K Sbjct: 2 GYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYGK 61 Query: 74 NADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLP 133 NA S LKLG+A+GVA+ AA+ + +P+ EY+ ++VKQ+V G G+A K QV +M+ +LK+ Sbjct: 62 NAQSMLKLGRAQGVAMAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKME 121 Query: 134 ANPQ-ADAADALAIAITH 150 + + DA D +AIAI H Sbjct: 122 LSREFMDATDGIAIAICH 139 >UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEQ0_RHOM4 Length = 191 Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 8/154 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD---LPSRLKLIYAGVTEIITQF 59 IILGIDPGSR TGYGV+ G + L I +D+ P RL ++ + I+ ++ Sbjct: 12 IILGIDPGSRHTGYGVLAVEGERARVLAVDVI--HLDEQAAHPLRLLRLFEQLGAIVERY 69 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +PD A+E +N S LKLG+A+ A++A + +++P EY ++VK+ + G G+A K Sbjct: 70 RPDECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATK 129 Query: 120 SQVQHMVRTLLKLPANPQA---DAADALAIAITH 150 QV+ MV+ LL+LPA DA+DALA+A+ H Sbjct: 130 EQVRFMVQALLELPAEAARLALDASDALAVAVCH 163 >UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=14 Tax=Bacteria RepID=RUVC_THEAB Length = 157 Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 84/135 (62%), Gaps = 1/135 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 I+G+DPG + GYG++ + ++S++ G I T+ D + RL IY E++ ++ PD Sbjct: 3 IIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYSPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F KN +A+ +G+ARGV ++A+ + +P++E+ QVK V G G A+K QV Sbjct: 63 ACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKKQV 122 Query: 123 QHMVRTLLKLPANPQ 137 Q MV+ LL L P+ Sbjct: 123 QKMVKMLLNLNDIPK 137 >UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=uncultured archaeon RepID=D1JHV6_9ARCH Length = 162 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPG+ TG+GV+ +L + G ++T RLK IY + +I PD Sbjct: 3 VIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVTPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F N +AL +GQARGV ++AA ++P +EY +VK + G G A KS+V Sbjct: 63 VMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKSEV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 V LKL P+ D DALAIA TH + N Sbjct: 123 ATSVMEKLKLEEMPKPDDVTDALAIAATHIIRNSN 157 >UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaeromyxobacter RepID=RUVC_ANADF Length = 206 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 8/162 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LGIDPGSR GYGV+ + G +L + SG + + + + RL I G+ E+I + P Sbjct: 2 IALGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +IEQVF + SAL LGQARGVA+ AA LPVFEYA +VK G G A K Q Sbjct: 62 AECSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKDQ 121 Query: 122 VQHMVRTL-LKLPANPQ-ADAADALAIAITHCHVSQNAMQMS 161 M+RT + L A P +D ADALA+A+ CH+++ A +++ Sbjct: 122 ---MIRTAHMLLGATPGLSDEADALALAV--CHLARRAGRLA 158 >UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Chlamydiaceae RepID=RUVC_CHLT2 Length = 170 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSY---LGSGCIRTKVDDLPSRLKLIYAGVTEIITQF 59 +I+GIDPG+ V GY +I+ R + G + K+ L R K ++ ++ I+ Q Sbjct: 4 LIMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLA-LAHRYKQLFTEISTILQQE 62 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 P +E ++ KN S +KLG ARGV ++AA Q++PVFEYA K+ VG G+A K Sbjct: 63 SPKAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASK 122 Query: 120 SQVQHMVRTLLKLP---ANPQADAADALAIAITHCHVS 154 QVQ MV LL++P A D ADA A+A+ H H++ Sbjct: 123 KQVQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160 >UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=cellular organisms RepID=RUVC_RICBR Length = 157 Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/156 (38%), Positives = 94/156 (60%), Gaps = 3/156 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 I+LGIDP G+ V+ + +L YL SG I+T D++ RL I + + ++I +++P Sbjct: 2 IVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE+ F+ N+ ++LKLG ARG + +L + E+ +K+TV G G AEK Q Sbjct: 62 NMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKDQ 121 Query: 122 VQHMVRTLLK-LPANPQADAADALAIAITHCHVSQN 156 + HM++ LL A +D ADA+AIA T C V++N Sbjct: 122 ILHMIKLLLPGTAAITNSDEADAVAIAYT-CLVTKN 156 >UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=84 Tax=Alphaproteobacteria RepID=RUVC_METRJ Length = 207 Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS--RLKLIYAGVTEIITQFQP 61 ILGIDPG R TG+G+I G +L+Y G + T +LP RL+ ++ G+ I+ +P Sbjct: 7 ILGIDPGLRRTGWGLITAQGTKLTYGDCGVV-TSDGELPLALRLRELFEGIGRIVEAVRP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+ F+ K+A + LKLG AR +A++ LPVFEYA +K+TV G G AEK Q Sbjct: 66 DEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGHAEKVQ 125 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHC-HVSQNAMQMSE 162 +Q MVR LL ADAADALAIAITH H +A++ + Sbjct: 126 IQAMVRFLLPKAEFRVADAADALAIAITHASHRDAHALRQAH 167 >UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Orientia tsutsugamushi RepID=RUVC_ORITB Length = 159 Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDP TG+GVI ++Y+ SG I+T D L +L I + ++IT+F P Sbjct: 2 IILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQ-ELPVFEYAARQVKQTVVGIGSAEKS 120 + A+E+VF+ KN S++ L QARG AI++ + + + EYA ++K+ +VG G AEK Sbjct: 62 FHVAMEEVFINKNYSSSVTLIQARG-AIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKH 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAIT 149 QVQ MV+ L+ + D +DALA A T Sbjct: 121 QVQQMVKLLMHIKKAISKDESDALATAYT 149 >UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLE5_9FIRM Length = 165 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 91/165 (55%), Gaps = 10/165 (6%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG+ G+G++ + G ++ + G I T K + RL ++Y GV E+I ++P Sbjct: 3 VLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYRPH 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + +E ++ N + +++ QARGV ++A Q +P QVKQ + G G AEK QV Sbjct: 63 FMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKKQV 122 Query: 123 QHMVRTLLKLPA--NPQADAADALAIAITHCHVSQNAMQMSESRL 165 MV ++ + NP DAADALAI +T + QM RL Sbjct: 123 IEMVMRIMHINTKINPD-DAADALAIGLTAIY------QMEHKRL 160 >UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1N9_9BACT Length = 172 Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 + LGIDPG GYG + Q G L GC+ T D R+K +Y GV E I P Sbjct: 9 VCLGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIENCSP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + ++E+++ +N +A + Q RG ++ LP+ E +VK TV G G+AEK Q Sbjct: 69 HFMSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAEKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAI 148 VQ M++ LL LP P+ D ADAL IA+ Sbjct: 129 VQLMIQQLLNLPEIPRPDDTADALGIAL 156 >UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Rhodopirellula baltica RepID=RUVC_RHOBA Length = 178 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 96/160 (60%), Gaps = 3/160 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 + ILGIDPG TGY VI + G +L +G I+++ D LP RL+ I+ G++E+ Sbjct: 14 SCILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHA 73 Query: 61 PDYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 D A+EQ+F + +A+ +G ARGV +AA + +PV Y +VK+ + G G A K Sbjct: 74 VDLMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPK 133 Query: 120 SQVQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAM 158 SQ+Q V+ L L + P+ AD ADA+AI++ +++ N + Sbjct: 134 SQIQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANNPI 173 >UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Synergistaceae RepID=D1BA53_THEAS Length = 165 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 + LGIDPG GYG++RQ G LS G G I T LP RL ++ + + +P Sbjct: 6 LCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGELGGVRP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+++ +N +A + QARGV ++ A +PV E +VK V G G A+K Q Sbjct: 66 DLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGGADKRQ 125 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAI 148 VQ MV LL L P D ADALA+AI Sbjct: 126 VQLMVTGLLGLKRCPSPDDVADALAVAI 153 >UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Borrelia turicatae 91E135 RepID=RUVC_BORT9 Length = 161 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 4/151 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG G+G++ + G + Y+ G + T L RLKLI + II F+PD Sbjct: 5 ILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFKPD 64 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +IE ++ AKN +A+ + +ARG I+ + L +EY QVK ++ G G EK QV Sbjct: 65 VASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKVQV 124 Query: 123 QHMVRTLLKLPAN---PQADAADALAIAITH 150 ++++R LL + + ++DALA+AI H Sbjct: 125 KYVIRILLGMKPDFIFTSDHSSDALALAICH 155 >UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=candidate division TM7 RepID=A5KTE8_9BACT Length = 158 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPD 62 I+GIDPG+ + G+GVI + + +G +RTKV L RL IY + II +P Sbjct: 3 IIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTRPT 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++F A+N +A+ + ARGVA++A +L + EY Q+KQT+ G G A K Q+ Sbjct: 63 IMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKKQI 122 Query: 123 QHMVRTLLKLPANPQ 137 Q MVR L L P+ Sbjct: 123 QEMVRLQLNLVEVPK 137 >UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHM8_9BACT Length = 163 Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 2/150 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQ 60 AI++G+DPG TG G+++ ++ Y+ +RT D LP RL +I G+ + +++ Sbjct: 3 AIVMGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYK 62 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E VF + N SA+ LGQ RG I + ++ V E+ A Q+K+ VVG G A+K Sbjct: 63 PSCSAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQ 122 Query: 121 QVQHMVRTLL-KLPANPQADAADALAIAIT 149 QV+ MV LL + N D DALA I Sbjct: 123 QVKKMVEVLLGRKMGNVPLDVTDALACGIC 152 >UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RUVC_UNCTG Length = 190 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVDDLPS-----RLKLIYAGVTEII 56 IILGIDPG +TG+GV+ R +++ L GCI+T +PS RL+ I + +I Sbjct: 2 IILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKT----MPSVPLIQRLQTINTKLQSVI 57 Query: 57 TQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGS 116 +++P+ +IE++F K S +GQ RG I+ A ++P+FEY + VK + G GS Sbjct: 58 DKYKPEVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGS 117 Query: 117 AEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 A+K Q+Q +V+T L+L P+ D A CHV Sbjct: 118 ADKYQMQRIVKTFLRLKEIPKPDDAADALAIAV-CHV 153 >UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA6_FIBSS Length = 189 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 2/151 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGS TGY +++ G Q+ L G +L RL I + + + + P Sbjct: 2 VILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYHP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E VF AKN SAL LG RG +VA + + EY + VKQ V G G+A K Sbjct: 62 DALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKEH 121 Query: 122 VQHMVRTLLKL-PANPQADAADALAIAITHC 151 V +M+ L + + DA+DALAIA TH Sbjct: 122 VANMIFAHLGIVGGDLPLDASDALAIAWTHA 152 >UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Wolbachia RepID=RUVC_WOLPP Length = 165 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MAIILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQ 58 M I+G+DPG TG+ +IR + + +LG G I T + RL +I+ + ++I Sbjct: 1 MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P+ A+E++F+ KN S+L LG AR +AI+ +LP+ EY A +K+++ G G A+ Sbjct: 61 YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 K Q+ MV+ ++K ADALA AI H + Sbjct: 121 KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKN 157 >UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Dictyoglomus RepID=RUVC_DICTD Length = 158 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 12/157 (7%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS------RLKLIYAGVTEII 56 +++G DPG+ +TGYG++ + +S + G + T PS RL ++ V+ ++ Sbjct: 2 VVIGFDPGTAITGYGILNKGEDGISIIEYGALTT-----PSGWGIGRRLNYLFDQVSSLL 56 Query: 57 TQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGS 116 + PD +E +F KN +A+ +GQA+GV I+AA + + +VK +VVG G Sbjct: 57 DLYNPDVVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGR 116 Query: 117 AEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHCH 152 A K+Q+Q+MV+ +LKL P+ D ADALA+ I++ + Sbjct: 117 ATKNQIQYMVKEILKLKDIPKPDDVADALALCISYIY 153 >UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZE7_HALO1 Length = 168 Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/152 (46%), Positives = 94/152 (61%), Gaps = 6/152 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQ----LSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQ 58 ILG+DPGSR+ GYGVI +VG Q +Y+ G + T+ + RL I +T+++T+ Sbjct: 3 ILGVDPGSRMCGYGVI-EVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVTE 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +P A+E VF +N SAL L QARG + A LPV+ YA VK+TV G G A Sbjct: 62 LRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRAP 121 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITH 150 K QV MV+ L+ L P+ADAADALA+AITH Sbjct: 122 KEQVALMVQALVGLRRVPEADAADALAVAITH 153 >UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Planctomyces RepID=A6C6Z1_9PLAN Length = 170 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 5/153 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LGIDPG TGY +++Q + G IR+ + +L +R+ I +G+ E+I ++QPD Sbjct: 12 FLGIDPGLNRTGYALLQQSVKGPVLCEGGIIRSNQEANLAARVHEIASGIREVIAEYQPD 71 Query: 63 YFAIEQVFMA-KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 IEQVF + S++ + ARG + AA + +PV Y Q+K+ + G G A K Q Sbjct: 72 VMVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITGSGRASKEQ 131 Query: 122 VQHMVRTLLKLPA--NPQADAADALAIAITHCH 152 +QH ++T L L A P D ADA A A+ H H Sbjct: 132 MQHAIKTELGLKAILEPN-DVADAFAAALCHYH 163 >UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBU8_9BACT Length = 169 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 13/160 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVDDLPSR--LKLIYAGVTEIITQF 59 +ILGIDP R TGYGVIR L L G I LP L+ + G+ E++ F Sbjct: 2 VILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANS-PKLPHSECLRRLAGGIRELVQAF 60 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 PDY +IE+ FM +NA +A+ LG ARG + A V +P + Y+ + K+ VG G A K Sbjct: 61 HPDYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATK 120 Query: 120 SQVQHMVRTLL-----KLPANPQADAADALAIAITHCHVS 154 Q+ ++ L ++P D+ DALA+AI H ++ Sbjct: 121 EQIAILLAAELGIEIERIP----LDSTDALALAICHAQLA 156 >UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES0_9DELT Length = 190 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 13/161 (8%) Query: 4 ILGIDPGSRVTGYGVIRQVGR----------QLSYLGSGCIRTKV-DDLPSRLKLIYAGV 52 ILGIDPG+RV GY ++ R + Y+ G +R + D++ RL I +G+ Sbjct: 6 ILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLVEIASGL 65 Query: 53 TEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVV 112 E++ +FQP AIE+ F NA SAL L +ARG + A+ L V EYA +K+ V Sbjct: 66 RELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAMIKRAVT 125 Query: 113 GIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 G G A K++VQ V+ L +L PQADAADALA AI CHV Sbjct: 126 GRGRATKAEVQARVQLLCRLAKEPQADAADALATAI--CHV 164 >UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SH09_9CAUL Length = 192 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 5/154 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQPD 62 I+G+DPG R G+GV+ G +L+++ G I + +L RL ++ ++++I ++P Sbjct: 8 IIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKVILLYRPQ 67 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE+ F+ N S LKLG AR A++A L V EYAA VK++VVG G A+K Q+ Sbjct: 68 EAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAGRADKDQI 127 Query: 123 QHMVRTLLKLPANPQ----ADAADALAIAITHCH 152 M++ LL A + D ADALA+A+TH H Sbjct: 128 LFMIKRLLPRAAAAENGLTPDMADALAVAVTHAH 161 >UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDV8_ELUMP Length = 189 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 3/153 (1%) Query: 1 MAIILGIDPGSRVTGYGVI-RQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQ 58 + +LGIDPG TG+ ++ R + G I + D LP RL+ I+ + ++ Sbjct: 6 LTTVLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEA 65 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++P++ A+E++F K A + + Q RGV ++AA + L + Y+ ++VK + G G+A Sbjct: 66 YKPNHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAG 125 Query: 119 KSQVQHMVRTLLKLPANPQA-DAADALAIAITH 150 K+Q+Q MV+ LKL P+ D ADA+AI I H Sbjct: 126 KAQIQRMVQLTLKLTKKPEPDDVADAIAIGICH 158 >UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RUVC_ACIC5 Length = 171 Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 16/173 (9%) Query: 4 ILGIDPGSRVTGYGVI-------RQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEI 55 I GID GS +TGYG++ R L + G IR K L RL ++ E+ Sbjct: 3 IFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVH---REL 59 Query: 56 ITQF---QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVV 112 +TQ QPD A+E+VF + NA SALKLG RGVA++AA LP+ EYA +K TV Sbjct: 60 LTQLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVT 119 Query: 113 GIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESR 164 G G A+K QVQ MV LL +P P+ A CH+ +Q +SR Sbjct: 120 GYGLAQKEQVQFMVARLLHMPEPPEPADAADALAIAI-CHIHHAQTIQAQQSR 171 >UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Anaplasma phagocytophilum HZ RepID=RUVC_ANAPZ Length = 163 Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 4/158 (2%) Query: 3 IILGIDPGSRVTGYGVI-RQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQ 60 ++ G+DPG TG+ V+ ++ LS L +G I T DL +L I++G++ II +F Sbjct: 2 LVFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 +IE VF+ N +++ L AR +++A ++ + +FEY+ ++K+ V G G A K Sbjct: 62 VSVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASKE 121 Query: 121 QVQHMVRTLLKLP--ANPQADAADALAIAITHCHVSQN 156 Q+ +VR+ L L A+ + A+DA+A A+ H S N Sbjct: 122 QIAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGN 159 >UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Brachyspira RepID=RUVC_BRAHW Length = 160 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 I LGIDPG GY I + SG I T + + RL IY + E+I +++P Sbjct: 2 ITLGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE++F +KN +A+K+ +ARGV I+A + EY ++VK + G G+A K Sbjct: 62 NNAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKDA 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHC 151 + MV L Q D ADA+AIA+ H Sbjct: 122 MMKMV-NLFTGSNIIQDDTADAVAIALAHA 150 >UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTA0_9PLAN Length = 147 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 3/142 (2%) Query: 23 GRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF-MAKNADSALK 80 R++ + +G +R K LP+R++ IY GV ++IT QP AIEQ++ + +A+ Sbjct: 6 NRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERPKTAII 65 Query: 81 LGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ-AD 139 +G ARGV +AA +P+ Y+A Q+K+ + G G A K+QVQ V+ L LP P+ D Sbjct: 66 MGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPEIPEPPD 125 Query: 140 AADALAIAITHCHVSQNAMQMS 161 ADALA+A+ H +++ Q++ Sbjct: 126 VADALAVALCHYYLASMPTQVA 147 >UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RUVC_HYPNA Length = 167 Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 1/128 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG R TG+GVI Q G +L ++ G I D + RL I+ V E+ P Sbjct: 7 ILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELARHHAPH 66 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +E+ + N SALKLGQARG A+ A + V E+A RQ+K +VVG G+A+K QV Sbjct: 67 AAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGTADKDQV 126 Query: 123 QHMVRTLL 130 + MV+ LL Sbjct: 127 KFMVQRLL 134 >UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Treponema denticola RepID=RUVC_TREDE Length = 178 Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQPD 62 ++GIDPG TGYG+I + + G I T+ L RL I+ V+E+I +++P Sbjct: 17 VIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSELIEKYRPK 76 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IE ++ AKNA SA+ + +ARGV ++A + V EYA +K+ V GI AEK QV Sbjct: 77 EAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIAQAEKRQV 136 Query: 123 QHMVRTLLKLPANPQAD 139 Q V+ +L L P+ D Sbjct: 137 QEAVKLILGLKEIPRPD 153 >UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaplasma RepID=RUVC_ANAMM Length = 165 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 +I+GIDPG TG+GV+ Q + L SG I T+ + +L IY + +++ ++ Sbjct: 2 MIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYK 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 D +IE+VF+ N S++ L AR + ++ +++ + ++EY++ +K+ + G G A K Sbjct: 62 IDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKE 121 Query: 121 QVQHMVRTLLKLPANPQAD--AADALAIAITHCHVSQN 156 QV MVR+ L + + + + ++DA+A A+ H + ++N Sbjct: 122 QVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRN 159 >UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=canis group RepID=RUVC_EHRRW Length = 160 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 4 ILGIDPGSRVTGYGVIR---QVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQF 59 I+GIDP TG+ ++ ++ + +G I T + RL IY+ + I+ + Sbjct: 3 IIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILNSY 62 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 + D ++E++F+ KN S+ L ARGV ++ +P+FEY+A +VK+++ G G A+K Sbjct: 63 KVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHAKK 122 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITH 150 QV M+ +L + + D +DA+A+AI H Sbjct: 123 EQVCFMIENILNIKCHGTYDISDAIAVAICH 153 >UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KB70_THENN Length = 170 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQFQP 61 ILG+DPG + G G+I G ++S++ G I T DLP RLK I+ I+ +F P Sbjct: 8 ILGVDPGYGIVGIGIIEISGNRISHVFHGAIETS-KDLPRGKRLKQIHEEFLRILEKFSP 66 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +F KN +A+ +G+ARGV ++A + +PVFEYA +VK ++ G G A K Q Sbjct: 67 DECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKRQ 126 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 VQ V+ L L P+ A A+AI CH Q+ M+ Sbjct: 127 VQENVKRFLGLSEIPRP-DDAADALAIAWCHALQSRMR 163 >UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=25 Tax=Epsilonproteobacteria RepID=RUVC_SULDN Length = 159 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPG+R GY +I +++ + +G I+ K ++L ++ + I + D Sbjct: 3 ILGIDPGTRKMGYALISLEKGKIALIEAGLIKIKAEELQFQIPQMVEAFEGIFKNHKIDE 62 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE +F A N + +KL Q RG ++ + Q EY A QVK+ + G G A K QV Sbjct: 63 VAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKEQVA 122 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCH 152 M + LL + + D DA+A+AITH Sbjct: 123 FMAKRLLNIKKEIKPLDITDAIAVAITHSQ 152 >UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Thermaceae RepID=RUVC_THET2 Length = 166 Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGR---QLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQ 58 ++ GIDPG G GV+ G+ + L ++T + R+ I+A V E++ + Sbjct: 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHR 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 F+P+ A+E+ F + + A K+G A G +VAA +PV+ Y QVKQ + G G A Sbjct: 62 FRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAA 121 Query: 119 KSQVQHMVRTLLKLPANPQ-ADAADALAIAITHC 151 K +V MVR +L L P+ + ADALAIA+TH Sbjct: 122 KEEVALMVRGILGLKEAPRPSHLADALAIALTHA 155 >UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMQ2_9BACT Length = 151 Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 1/124 (0%) Query: 15 GYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAK 73 G+GV+ ++G + GC+ T D +P RL +Y G+ E I P + A+E+++ + Sbjct: 2 GFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFGR 61 Query: 74 NADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLP 133 N +A + QARGVA++ +L V E + K TV G G AEKSQ+Q MV+ +L L Sbjct: 62 NTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVILSLK 121 Query: 134 ANPQ 137 P+ Sbjct: 122 EIPR 125 >UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Verrucomicrobia RepID=RUVC_AKKM8 Length = 167 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 1/148 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKL-IYAGVTEIITQFQPD 62 IL IDP R TGY V+ R+ L G + S L I + +I ++ PD Sbjct: 3 ILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWNPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E++ ++ +A+ +G A+ ++AA L + EY+ + VK +VVG G+A+K+QV Sbjct: 63 EMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKTQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITH 150 MVR LL+L P++DAADALAI +TH Sbjct: 123 AFMVRALLELRETPESDAADALAIGLTH 150 >UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Deinococcus RepID=RUVC_DEIGD Length = 168 Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQP 61 I+LG+DPG G G++ R+ +L C+ T+ L P RL+ ++ V ++ +++P Sbjct: 2 IVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRRLQYLHEEVARLLAEYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE + + AD A K+GQA GV +A +P+ Y QVK+++VG G A+K Q Sbjct: 62 DAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGTGRADKEQ 121 Query: 122 VQHMVRTLL 130 + +MV+ L Sbjct: 122 IIYMVKATL 130 >UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKP6_DESAH Length = 164 Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 2/135 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQF 59 M ++G+DPG TG GVI G ++ G I T DD SRL I+ V + + Q Sbjct: 4 MVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFLCQE 63 Query: 60 QPDYFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +PD IE VF + K S + LG+ GV +VAA V E + R+ K+ V G GSA+ Sbjct: 64 KPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSGSAD 123 Query: 119 KSQVQHMVRTLLKLP 133 K+QV+ VR +L P Sbjct: 124 KNQVEKSVRNILNHP 138 >UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=bacterium Ellin514 RepID=B9XLI6_9BACT Length = 193 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 77/139 (55%), Gaps = 1/139 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR-LKLIYAGVTEIITQFQPD 62 ILG+DP R TG+G+IR L G I SR L I + ++I Q QP Sbjct: 31 ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F A+N +AL +G+ARG A+ L +FE A R+VKQ +VG G+A+K V Sbjct: 91 VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150 Query: 123 QHMVRTLLKLPANPQADAA 141 MV+ +L L P+ DAA Sbjct: 151 AKMVQRMLHLSELPEPDAA 169 >UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Cyanobacteria RepID=RUVC_TRIEI Length = 163 Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 9/143 (6%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-------LSYLGSGCIRT-KVDDLPSRLKLIYAGVTE 54 +ILG+DPG V G+G+I+ + S + G I+T K ++ RL IY + Sbjct: 4 LILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHT 63 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 I+ F+PD A E++F + ++ L + QARG+ I+A E+P+ E+ Q+KQ V G Sbjct: 64 ILNNFKPDLAATEKLFFYRMGNTIL-VAQARGILILALAQNEIPLIEFTPAQIKQAVTGY 122 Query: 115 GSAEKSQVQHMVRTLLKLPANPQ 137 G+A+K VQ V L L P+ Sbjct: 123 GNADKYDVQQAVARELNLEEIPK 145 >UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK96_9BACT Length = 151 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 1/107 (0%) Query: 45 LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 104 LK ++ +T++I ++PD+ +IE F +K A +A+ LG ARG + A +LPV+EY+ Sbjct: 29 LKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMILGMARGSVLSALAGTDLPVWEYSP 88 Query: 105 RQVKQTVVGIGSAEKSQVQHMVRTLLKLPANP-QADAADALAIAITH 150 ++ KQ + G G A K QV M+ +L+ + DA DALA+A+ H Sbjct: 89 KRAKQAITGSGDASKEQVAFMIAGILQADVSQINDDATDALALAVCH 135 >UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=27 Tax=Epsilonproteobacteria RepID=RUVC_CAMJR Length = 160 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 74/148 (50%), Gaps = 1/148 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPGSR GY +I + + +G I+ K L ++ + G+ I D Sbjct: 5 ILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQYQITELCEGLDLIFKNHSFDE 64 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE +F A N + LKL Q RG + + EY QVK+ V G A K QV Sbjct: 65 VAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKEQVA 124 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITH 150 MV+ LL L + + D DA+A+A+TH Sbjct: 125 FMVKRLLGLSKDIKPLDITDAIAVALTH 152 >UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Neorickettsia RepID=RUVC_NEOSM Length = 166 Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 4/149 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 + LG+DPG TG+ V+ G + Y+ SG ++T L +RL+ I+ G++++I + Sbjct: 4 VALGVDPGLLRTGWAVVEYDGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIEKVN 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E+VF+ N S+L L RG I+ + L + E+A +K+ + G G A K+ Sbjct: 64 PSVAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRATKA 123 Query: 121 QVQHMVRTLLKLPA--NPQADAADALAIA 147 QV++MV LL L + +D DALA+A Sbjct: 124 QVKYMVEQLLGLDPCLSKYSDLYDALALA 152 >UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=32 Tax=Actinomycetales RepID=RUVC_STRGG Length = 204 Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 4 ILGIDPG-SRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG +R V GR L+ +G G +RT D +L RL + G+ + + + P Sbjct: 3 VLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEHSP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 Y A+E+VF N + + QA VA++ A + +PV + +VK V G G A+K+Q Sbjct: 63 GYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADKAQ 122 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHV----SQNAMQ 159 V MV LL+L A P+ A CH+ +QN +Q Sbjct: 123 VGAMVTRLLRLDAPPKPADAADALALAI-CHIWRAPAQNRLQ 163 >UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=24 Tax=cellular organisms RepID=RUVC_PROM4 Length = 158 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 3/149 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG GYG+I Q L G I+T D + R+ I + +I +++P Sbjct: 2 IILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E+ F +++ + +K+ QARGV I+ +P+ E+ Q+K V G G A K + Sbjct: 62 QIASVEKFFFYRSS-TTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKDE 120 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAIT 149 V V L L P+ DA+DALAIA+T Sbjct: 121 VSMAVIRELDLSKPPRPDDASDALAIALT 149 >UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZJ0_ACIFD Length = 164 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQPD 62 ILG+DPG GY VI G L +G+G + T SRL I G ++ F P Sbjct: 8 ILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESVLDDFDPT 67 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++ +N SAL + + GV +A + + ++ + VK GSA K QV Sbjct: 68 EAAIERLAFTRNVSSALPVSEVVGVVRLALWRRGVVAYDISPNTVKNAATSGGSAAKEQV 127 Query: 123 QHMVRTLLKLPANPQ-ADAADALAIAITH 150 Q V LL L PQ D ADA+AIA T Sbjct: 128 QRTVVRLLGLDEPPQPPDVADAMAIAYTR 156 >UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Leptospira RepID=Q04V33_LEPBJ Length = 166 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 9/168 (5%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 I+GIDPGS GY V+ + ++ L G + P+ L ++ G+TEI+ +F+P Sbjct: 3 IIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFKPS 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q+ Sbjct: 63 IASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKKQI 122 Query: 123 -QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 Q + L D+ DA+A A + MS S L AR Sbjct: 123 RQALKLLLDIDLLKGHDDSWDAVAAAYV-------GLSMSSSPLFAAR 163 >UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Nostocaceae RepID=UPI0001C17184 Length = 192 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQ-------LSYLGSGCIRTKVD-DLPSRLKLIYAGVTEI 55 ILG+DPG + G+G I R ++ + G IRT D ++ RL ++ + + Sbjct: 31 ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLFDDLHTL 90 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 + + QPD AIE++F + A++ L + QARGV ++ + LP E+A Q+KQ + G Sbjct: 91 LDELQPDVVAIERLFFYRMANTIL-VAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSYG 149 Query: 116 SAEKSQVQHMVRTLLKLPANPQ 137 AEK +VQ V L L PQ Sbjct: 150 KAEKIEVQEAVMRELDLEEIPQ 171 >UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Cyanobacteria RepID=RUVC_ANASP Length = 163 Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Query: 4 ILGIDPGSRVTGYGVIRQV-------GRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEI 55 ILG+DPG + G+G I +++ L G I+T D ++ RL ++ + + Sbjct: 5 ILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLFDDLHTV 64 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 I Q QPD AIE++F + + S + + QARGV ++A LP E+ Q+K + G G Sbjct: 65 IDQLQPDVVAIEKLFFYRMS-STIVVAQARGVVMLALAQHHLPYVEFTPAQIKLALTGYG 123 Query: 116 SAEKSQVQHMVRTLLKLPANPQ 137 +A+KS+VQ V L L P+ Sbjct: 124 NADKSEVQEAVARELDLAEIPR 145 >UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax=Sulfurihydrogenibium RepID=B2V8P7_SULSY Length = 154 Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IL IDP S TGY + + + L G I K + P LK +Y + E I ++ Sbjct: 1 MERILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEKQP--LKKLYQALEEKILKYT 58 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 + +E F + NA + +KLG+ RGV ++ A N + V E++ +VK ++ G G + K Sbjct: 59 IEKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKE 118 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 +V MV + L D ADA AI HC++ Sbjct: 119 EVLEMVNKIFNLNIK-DYDIADAF--AILHCYM 148 >UniRef50_Q8F836 Holliday junction resolvasome endonuclease subunit n=2 Tax=Leptospira interrogans RepID=Q8F836_LEPIN Length = 176 Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 2/146 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPD 62 I+GIDPGS GY V+ + ++ L G + P L ++ G+ EI+ +F P Sbjct: 15 IIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFNPS 74 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q+ Sbjct: 75 IASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKKQI 134 Query: 123 -QHMVRTLLKLPANPQADAADALAIA 147 Q + L D+ DA+A A Sbjct: 135 HQALKLLLNVELLKGHDDSWDAIAAA 160 >UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax=Desulfobacteraceae RepID=B8FBT6_DESAA Length = 168 Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG TG ++ Q+ G I T + L RL IY + E+ +PD Sbjct: 3 VLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAERPD 62 Query: 63 YFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E +F + K S + LG+ G +VA + +PV E A R+VK+ + G G+A+K+Q Sbjct: 63 LMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADKNQ 122 Query: 122 VQHMVRTLL-KLPANPQADAADALAIAITHCHVSQNAMQMSESRLN 166 ++ VR L + A + A+DA+A+A+ + + ++ R++ Sbjct: 123 LERAVRQRLGREEAIRPSHASDAMALALIGLYRGDHYLRNGLDRIS 168 >UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Actinobacteridae RepID=C7MCB8_BRAFD Length = 197 Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPG G GV+ +G R+ + +G +R++ D L RL I G+ + +F P Sbjct: 6 VLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEEFGP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+VF N + + Q G+A++ A + +P + +VK V G G A+K Q Sbjct: 66 DAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRADKKQ 125 Query: 122 VQHMVRTLLKL 132 +Q M+ LL L Sbjct: 126 IQTMLVKLLGL 136 >UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=46 Tax=Actinomycetales RepID=RUVC_MYCVP Length = 194 Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 4 ILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 ++G+DPG G VI GRQ+ L +RT L RL I V + +P Sbjct: 3 VMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTHRP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE+VF +NA++A+ QA GV +AA +++ V + +VK V G G A+K+Q Sbjct: 63 DVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADKAQ 122 Query: 122 VQHMVRTLLKLPANP 136 V MV +L L P Sbjct: 123 VTEMVTRILALQQKP 137 >UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=22 Tax=Actinomycetales RepID=RUVC_SACEN Length = 199 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%) Query: 4 ILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPG G GV+ GR ++ +G G RT D +L +RL + V E + +P Sbjct: 3 VLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTHRP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE+VF N + + Q G+ +AA + LPV + +VK + G G A+K Q Sbjct: 63 EVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADKRQ 122 Query: 122 VQHMVRTLLKL 132 V MV +L L Sbjct: 123 VTTMVTKILGL 133 >UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Cyanobacteria RepID=RUVC_SYNJB Length = 168 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 ILG+DPG G+G I L + G I T +P RL+ ++ +++++ Q +P Sbjct: 15 ILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRPH 74 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +E++F K ++ + + QARGV ++ L E+ QVKQ++ G G A+K V Sbjct: 75 QVGLEKLFFYKMGNT-IAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQAV 133 Query: 123 QHMVRTLLKLPANPQ 137 Q V L LP+ P+ Sbjct: 134 QAAVARELNLPSLPR 148 >UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax=Actinomycetaceae RepID=C2KQ22_9ACTO Length = 209 Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 4/137 (2%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVDDLPSRLKL--IYAGVTEIITQFQ 60 +LGIDPG G GV+ V R S + IR++ +L ++ +L I G+ IT+F Sbjct: 3 VLGIDPGITRCGVGVVDIDVSRVASLVYVAVIRSE-PNLATQFRLLKISEGIAATITRFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ A+E+ F +N S QA GVA+ A LPV + +VK V G G+A K+ Sbjct: 62 PEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGAATKA 121 Query: 121 QVQHMVRTLLKLPANPQ 137 QV+ M+ +L+L P+ Sbjct: 122 QVEAMIARILRLDKPPK 138 >UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bifidobacteriaceae RepID=RUVC_BIFLD Length = 194 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 8/139 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVG--RQLSYLGSGCIRTKVD---DLPSRLKLIYAGVTEIIT 57 IILG+DPG G GVI + G R+LS++ +R+ D DL RL IY G++E + Sbjct: 2 IILGVDPGLTRCGVGVI-EAGEHRRLSFIHVDVVRSSPDITQDL--RLLAIYNGLSEKMD 58 Query: 58 QFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 +F PD +IE+VF N ++ L QA G+A++AA + +PV + + K + G G A Sbjct: 59 RFAPDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQA 118 Query: 118 EKSQVQHMVRTLLKLPANP 136 +K QV+ MV +L L P Sbjct: 119 QKIQVERMVTRILNLTKMP 137 >UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y8_COPPD Length = 159 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKL--IYAGVTEIITQFQ 60 ++ G+DPGS G ++ R ++L C+ ++ LP L+ I V + F Sbjct: 2 VVFGVDPGSTRVGLALLDDESR--NWLHVQCL--ELTGLPEHLRYTTIERYVGALCDVFN 57 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE++ KN ++ L++ + RGV + A + + VFEY +VK G G EK+ Sbjct: 58 PEEMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEKA 117 Query: 121 QVQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQN 156 + ++ P DA+DA+AIA H + N Sbjct: 118 GIVRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNN 154 >UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJX2_9ACTN Length = 201 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ++GIDPG G GV+ R+ + + G +RT + L RL+ I G+ +I ++ P Sbjct: 5 VIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAEYAP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+VF N + + QA GVA+ A + + V + +VK + G G AEK Q Sbjct: 65 HQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAEKKQ 124 Query: 122 VQHMVRTLLKL 132 V MV +L L Sbjct: 125 VGAMVARVLGL 135 >UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subunit n=2 Tax=Rothia mucilaginosa RepID=D2NT02_9MICC Length = 228 Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 2/136 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 I+G+DPG G+ ++ R+ ++ G T L R+ I+ + + ++P Sbjct: 29 IMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDTYRP 88 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE++F + ++ + A G I AA + +PVF + +VK V G G A+K+ Sbjct: 89 DALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRADKAS 148 Query: 122 VQHMVRTLLKLPANPQ 137 V MV +L L A P+ Sbjct: 149 VGRMVTRILGLNAMPK 164 >UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI47_KYTSD Length = 208 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQP 61 +LG+DPG G GV+ + G L + RT D LP RL + + + I + P Sbjct: 3 VLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETYDP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E++F + + + QA GVA+VAA + V ++ +VK V G G A K Q Sbjct: 63 DAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGKEQ 122 Query: 122 VQHMVRTLLKL 132 V MV +L L Sbjct: 123 VTSMVVRILSL 133 >UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVS7_9CORY Length = 175 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY 102 RLK +Y +T+ I +++PD A+E++F + L A GV I+AA L V EY Sbjct: 3 DRLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVHEY 62 Query: 103 AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMS 161 QVK+ + G G A+K Q+ MV +L L P+ DAADALAIAITHC + ++ Sbjct: 63 TPSQVKKAITGNGRADKKQMTAMVTRILGLENPPKPADAADALAIAITHCWRAPQILREE 122 Query: 162 ESRLNLAR 169 +++ L + Sbjct: 123 KAKEQLRK 130 >UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=23 Tax=Actinobacteridae RepID=RUVC_CLAMS Length = 204 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 2/135 (1%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG G GV+ R + +RT +L RL + G+ E++ + +P Sbjct: 3 ILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVDRHRP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+VF N + + + Q GVA+V A + L V + +VK V G G A+K Q Sbjct: 63 SVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADKRQ 122 Query: 122 VQHMVRTLLKLPANP 136 V MV +L L P Sbjct: 123 VATMVARILGLDELP 137 >UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Actinomycetales RepID=RUVC_ACIC1 Length = 178 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ++G+DPG G GV+ +G + T D +L RL + G+ + + + PD Sbjct: 14 VMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWLDRAAPD 73 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E+VF N + + QA VA++ A + +PV + +VK V G G A K QV Sbjct: 74 VVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGRAGKDQV 133 Query: 123 QHMVRTLLKLP 133 MVR LL+ P Sbjct: 134 AFMVRRLLRAP 144 >UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Actinomycetales RepID=RUVC_FRASC Length = 172 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 ILGIDPG-SRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPG +R V +G + + G +RT ++ RL + G+ + + +P Sbjct: 3 VLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRTRP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+VF N + + QA VAIV A + LPV Y +VK V G G A+K+Q Sbjct: 63 EAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADKAQ 122 Query: 122 VQHMVRTLLKL 132 V M+ LL L Sbjct: 123 VSFMITRLLGL 133 >UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax=Verrucomicrobia RepID=B1ZSD5_OPITP Length = 200 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 4 ILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDP R TG +I GR L +R + L I+ V + + Sbjct: 46 VLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTEV 105 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+EQ +N +A LG ARG A+ A Q PVFEYA +VKQ VVG G A K Q Sbjct: 106 RHVALEQTIFVQNFQTAQILGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASKEQ 165 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITH 150 + V LL +D ADA +A+ H Sbjct: 166 MARTVMALLGHGRPLASDEADAAGVALCH 194 >UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax=Tropheryma whipplei RepID=Q83GK1_TROWT Length = 183 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 8/168 (4%) Query: 4 ILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 I+ +DPG G V+ G L L T + +R+ I + ++ +F P Sbjct: 3 IMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEEFSP 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FA+E+VF N + + GVA + + ++K ++ G G+A+K Q Sbjct: 63 DLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGNAKKDQ 122 Query: 122 VQHMV-RTLLKLPANPQADAADALAIAITHCHVSQNAM---QMSESRL 165 ++ MV R L + DA+DALA+A+ C + A+ +E+RL Sbjct: 123 IRSMVNRVFLSQDIPLRHDASDALALAV--CCARRYALHNEHFTEARL 168 >UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subunit-like protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTU4_9BACL Length = 210 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGID G+R G+ V+ G + +LG G I T D L + + ++ V +I ++P Sbjct: 3 ILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYEPT 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E+ ++ L + A +AAV + +P+ + +++K G G AEK V Sbjct: 63 IVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKDDV 122 >UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Cyanobacteria RepID=RUVC_SYNY3 Length = 167 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%) Query: 5 LGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LGIDPG + G+ ++ Q + G I T + P RL I + ++ +F P Sbjct: 11 LGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFSPQ 70 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQEL--PVFEYAARQVKQTVVGIGSAEKS 120 A+E F ++ +A + QA GV + ++ PVF + + + +G G A K+ Sbjct: 71 AIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSW--KCHLGNGKANKA 128 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAI 148 +V MV+ L P D+ DA+AIA+ Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIAL 156 >UniRef50_B6ALY9 Probable crossover junction endodeoxyribonuclease (RuvC) n=3 Tax=Leptospirillum RepID=B6ALY9_9BACT Length = 158 Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQFQ 60 +LG+DPG TG+ V+ +L L G +RT LP R+ L++ + +++++ Sbjct: 1 MLGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTD-STLPVSRRIGLLFDRLDALLSEYP 59 Query: 61 PDYFAIEQVFMAKNADSA-LKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 A+E F + + A L LG G+ + A +P+ + R++K + G G+A K Sbjct: 60 VKGIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASK 119 Query: 120 SQVQHMVRTLL 130 VQ+ + L Sbjct: 120 EAVQNALSVWL 130 >UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclease subunit, RuvC n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54CFC Length = 76 Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSG-CIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPG TG+ VI + G ++ YLGSG C + D+ SRL I + II F+ Sbjct: 3 VIGIDPGLIHTGWAVIEEDGPKIKYLGSGTCNTSNKSDMASRLVSILEQLRLIILNFKIK 62 Query: 63 YFAIEQVFMAKN 74 AIE+ F+ + Sbjct: 63 SGAIEKAFVKND 74 >UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanothece RepID=A3IVL4_9CHRO Length = 130 Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 39 DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGV-AIVAAVNQEL 97 D LP RL I A + EI+ ++Q AIEQ F+ S KL Q GV +VA + L Sbjct: 13 DPLPYRLGEIEADLREILQEYQVTNIAIEQPFIQPEFPSMTKLLQVLGVINLVAYRHGCL 72 Query: 98 PVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAIT-HCHVSQ 155 P Y A ++ + AE+ + +V L L + DA+A+A T C + Q Sbjct: 73 PTMIYPA--TWKSNLDHPKAEREDLTAIVEELFDLQSILLNQEVDAIAVAYTAWCGLGQ 129 >UniRef50_A6QSQ2 Predicted protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6QSQ2_AJECN Length = 999 Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 29 LGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVA 88 LG+G R KVD +P KL+ +TE + + FA + F N D+A K + G+ Sbjct: 798 LGTGVSRDKVDSIPLDPKLLSTSITEFLEKLLDPNFAGKSHFHHCNPDTAQKFPKCSGIV 857 Query: 89 IVAA 92 +V + Sbjct: 858 LVES 861 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=... 238 6e-62 UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=... 235 5e-61 UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=... 235 5e-61 UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=... 234 9e-61 UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=... 234 1e-60 UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=... 232 3e-60 UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=... 232 3e-60 UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=... 232 4e-60 UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=... 232 4e-60 UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=... 229 2e-59 UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=... 228 5e-59 UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=... 228 7e-59 UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=... 227 1e-58 UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=... 227 1e-58 UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=... 227 2e-58 UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=... 226 2e-58 UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=... 224 9e-58 UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=... 222 5e-57 UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=... 221 7e-57 UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=... 219 2e-56 UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=... 219 3e-56 UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=... 218 6e-56 UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=... 216 2e-55 UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=... 214 1e-54 UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=... 213 2e-54 UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxy... 213 2e-54 UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=... 211 6e-54 UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=... 209 2e-53 UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=... 209 2e-53 UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax... 209 3e-53 UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=... 209 4e-53 UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=... 208 5e-53 UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=... 208 6e-53 UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=... 207 1e-52 UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=... 206 2e-52 UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=... 206 2e-52 UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=... 204 8e-52 UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=... 203 2e-51 UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease ... 203 2e-51 UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemm... 202 4e-51 UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistip... 201 9e-51 UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=... 201 1e-50 UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=... 201 1e-50 UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=... 200 1e-50 UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=... 200 2e-50 UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=... 199 3e-50 UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=... 199 4e-50 UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=... 198 6e-50 UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=... 197 1e-49 UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=... 197 1e-49 UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=... 197 2e-49 UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=... 197 2e-49 UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=... 196 2e-49 UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=... 196 3e-49 UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=... 195 3e-49 UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=... 195 4e-49 UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea bla... 195 6e-49 UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=... 194 7e-49 UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=... 194 7e-49 UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=... 194 8e-49 UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=... 194 9e-49 UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=... 194 9e-49 UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=... 194 1e-48 UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=... 193 2e-48 UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=... 193 2e-48 UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=... 192 4e-48 UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=... 190 1e-47 UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=... 190 1e-47 UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=... 190 1e-47 UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=... 190 1e-47 UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=... 189 3e-47 UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=... 189 3e-47 UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=... 189 3e-47 UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=... 189 3e-47 UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=... 189 4e-47 UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=... 188 5e-47 UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=... 188 7e-47 UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=... 188 8e-47 UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=... 187 1e-46 UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=... 186 3e-46 UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=... 185 3e-46 UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=... 185 4e-46 UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=... 185 4e-46 UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=... 185 4e-46 UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=... 184 8e-46 UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=... 184 9e-46 UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=... 184 9e-46 UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=... 184 1e-45 UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=... 184 1e-45 UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=... 183 2e-45 UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=... 183 2e-45 UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subu... 183 2e-45 UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=... 182 3e-45 UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=... 182 3e-45 UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=... 182 4e-45 UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=... 181 8e-45 UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=... 180 1e-44 UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=... 180 1e-44 UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=... 179 3e-44 UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=... 179 3e-44 UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=... 179 3e-44 UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=... 179 3e-44 UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=... 179 4e-44 UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=... 178 6e-44 UniRef50_D2UF38 Putative holliday junction resolvasome, endonucl... 176 2e-43 UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=... 176 3e-43 UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=... 175 6e-43 UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=... 174 1e-42 UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=... 174 1e-42 UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=... 174 1e-42 UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=... 173 2e-42 UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=... 172 5e-42 UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=... 171 7e-42 UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=... 171 9e-42 UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=... 170 1e-41 UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=... 169 3e-41 UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease ... 169 5e-41 UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=... 169 5e-41 UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=... 168 5e-41 UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=... 168 8e-41 UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=... 166 3e-40 UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=... 165 4e-40 UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=... 165 5e-40 UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=... 164 1e-39 UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subu... 164 1e-39 UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actin... 163 2e-39 UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax... 162 3e-39 UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=... 162 3e-39 UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=... 162 4e-39 UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=... 162 5e-39 UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kyto... 162 6e-39 UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Acti... 161 9e-39 UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subu... 160 2e-38 UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=... 159 3e-38 UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=... 159 4e-38 UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=... 159 4e-38 UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax... 159 4e-38 UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=... 157 2e-37 UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=... 156 3e-37 UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax... 154 1e-36 UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Lept... 153 3e-36 UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax... 152 5e-36 UniRef50_Q8F836 Holliday junction resolvasome endonuclease subun... 150 2e-35 UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (H... 149 4e-35 UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=... 149 5e-35 UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax... 146 2e-34 UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=... 145 4e-34 UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=... 145 7e-34 UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=... 144 1e-33 UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=... 143 1e-33 UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2... 142 6e-33 UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax... 138 1e-31 UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subun... 118 9e-26 UniRef50_B6ALY9 Probable crossover junction endodeoxyribonucleas... 116 3e-25 UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclea... 84 2e-15 Sequences not found previously or not previously below threshold: UniRef50_A9VVH9 Crossover junction endodeoxyribonuclease RuvC n=... 104 2e-21 UniRef50_C3CV70 Crossover junction endodeoxyribonuclease ruvC n=... 92 6e-18 UniRef50_UPI00016C63C7 crossover junction endodeoxyribonuclease ... 91 1e-17 UniRef50_C0ZXA4 Putative uncharacterized protein n=1 Tax=Rhodoco... 85 1e-15 UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanoth... 83 5e-15 UniRef50_A7KUW6 RuvC n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7... 71 2e-11 UniRef50_A9U6S4 Predicted protein n=2 Tax=cellular organisms Rep... 66 5e-10 UniRef50_B4B914 Holliday junction resolvasome endonuclease subun... 65 1e-09 UniRef50_B8FNH8 Putative uncharacterized protein n=1 Tax=Desulfa... 65 1e-09 UniRef50_C3RQB8 Predicted protein n=1 Tax=Mollicutes bacterium D... 63 4e-09 UniRef50_Q19Z77 Gp9 n=2 Tax=unclassified Siphoviridae RepID=Q19Z... 63 4e-09 UniRef50_C3IV59 Crossover junction endodeoxyribonuclease ruvC n=... 60 3e-08 UniRef50_B3VLT4 Gp5 n=9 Tax=unclassified Siphoviridae RepID=B3VL... 60 4e-08 UniRef50_UPI0001693708 crossover junction endodeoxyribonuclease ... 59 6e-08 UniRef50_A8V1X8 Putative uncharacterized protein n=1 Tax=Hydroge... 59 7e-08 UniRef50_A9GHB7 Crossover junction endodeoxyribonuclease ruvC n=... 58 1e-07 UniRef50_UPI0001743ACA hypothetical protein cdivTM_35644 n=1 Tax... 57 4e-07 UniRef50_D2LVB2 Putative uncharacterized protein n=1 Tax=Bacillu... 56 4e-07 UniRef50_D1JM27 Predicted protein n=1 Tax=Bacteroides sp. 2_1_16... 55 1e-06 UniRef50_Q8SD22 PHIKZ140 n=1 Tax=Pseudomonas phage phiKZ RepID=Q... 54 2e-06 UniRef50_Q19YZ7 Gp8 n=3 Tax=unclassified Siphoviridae RepID=Q19Y... 54 2e-06 UniRef50_UPI0001692F19 crossover junction endodeoxyribonuclease ... 54 2e-06 UniRef50_B1ZCZ8 Putative uncharacterized protein n=1 Tax=Methylo... 54 2e-06 UniRef50_C6ADE4 Phage related protein n=32 Tax=root RepID=C6ADE4... 53 4e-06 UniRef50_UPI0001694EFC hypothetical protein Plarl_04065 n=2 Tax=... 53 5e-06 UniRef50_B6JE97 Holliday junction resolvasome, endonuclease subu... 52 8e-06 UniRef50_C3PY89 Predicted protein n=1 Tax=Bacteroides sp. 9_1_42... 52 1e-05 UniRef50_Q6VY77 Putative uncharacterized protein n=3 Tax=root Re... 52 1e-05 UniRef50_B4AHF0 Putative uncharacterized protein n=1 Tax=Bacillu... 49 5e-05 UniRef50_Q6J7Y5 Pas46 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q... 49 7e-05 UniRef50_A4IS84 Putative phage protein n=3 Tax=Bacillaceae RepID... 49 8e-05 UniRef50_Q1CP43 Phage protein n=14 Tax=root RepID=Q1CP43_STRPF 48 8e-05 UniRef50_B4BNF7 Putative uncharacterized protein n=1 Tax=Geobaci... 48 1e-04 UniRef50_UPI000174338C hypothetical protein cdivTM_33987 n=1 Tax... 47 2e-04 UniRef50_A0Q9I8 Gp6 protein n=1 Tax=Mycobacterium avium 104 RepI... 47 3e-04 UniRef50_A6T1P7 Putative uncharacterized protein n=7 Tax=Proteob... 47 4e-04 UniRef50_UPI0001AF06E0 hypothetical protein AbauAB_10287 n=1 Tax... 45 8e-04 UniRef50_D0UWA9 Putative uncharacterized protein n=1 Tax=Strepto... 45 0.001 UniRef50_Q858D2 Crossover junction endodeoxyribonuclease n=1 Tax... 45 0.001 UniRef50_B8IAN4 Putative bacteriophage-related protein n=3 Tax=M... 45 0.001 UniRef50_UPI0001BCAEA7 hypothetical protein FperA3_10306 n=1 Tax... 44 0.002 UniRef50_C8XUH5 Conserved hypothetical phage protein n=1 Tax=Shi... 44 0.002 UniRef50_Q11J27 Putative uncharacterized protein n=1 Tax=Chelati... 44 0.002 UniRef50_C9DFZ6 Putative uncharacterized protein 24 n=1 Tax=Deft... 44 0.002 UniRef50_C6CX51 Putative uncharacterized protein n=1 Tax=Paeniba... 43 0.005 UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomona... 42 0.010 UniRef50_B6JDL8 Holliday junction resolvasome, endonuclease subu... 40 0.024 UniRef50_Q1A0A9 Gp7 n=1 Tax=Mycobacterium phage Cooper RepID=Q1A... 40 0.025 UniRef50_B3FJ87 Putative uncharacterized protein n=1 Tax=Pseudom... 40 0.028 UniRef50_C5D4D6 RNA binding S1 domain protein n=44 Tax=cellular ... 40 0.039 UniRef50_Q2L2F3 Phage protein n=3 Tax=Burkholderiales RepID=Q2L2... 39 0.067 UniRef50_Q023G3 Phage integrase family protein n=1 Tax=Candidatu... 38 0.088 >UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Geobacter sp. FRC-32 RepID=RUVC_GEOSF Length = 173 Score = 238 bits (608), Expect = 6e-62, Method: Composition-based stats. Identities = 86/151 (56%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR+TGYG++ + G +L ++ +G I T D PSRLK IY ++EII ++PD Sbjct: 3 ILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYRPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E +F + N SALKLGQARG AIVA VN L VFEY A QVKQ VVG G A K QV Sbjct: 63 AVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHV 153 Q M++ LL LP Q DA+DALA+AI H H Sbjct: 123 QQMIKVLLNLPEIAQEDASDALAVAICHAHS 153 >UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=21 Tax=Proteobacteria RepID=RUVC_AZOSE Length = 185 Score = 235 bits (601), Expect = 5e-61, Method: Composition-based stats. Identities = 88/168 (52%), Positives = 106/168 (63%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 ILG+DPG R+TG+GVI ++G QL Y+ SGCIRT+ +LP RLK + GV E++ + P Sbjct: 10 TRILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTRDGELPGRLKTLLDGVREVVAAYTP 69 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+VF+ N S L LGQARG I AV+ +LPV EY A QVKQ VVG G A K Q Sbjct: 70 DQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQ 129 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQHMV+ LL L P DAADALA AI H H Q R R Sbjct: 130 VQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGRRRAGR 177 >UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=182 Tax=Proteobacteria RepID=RUVC_BURM7 Length = 180 Score = 235 bits (600), Expect = 5e-61, Method: Composition-based stats. Identities = 90/177 (50%), Positives = 108/177 (61%), Gaps = 7/177 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG RVTG+GVI G QL+Y+ SG I+T DLP+RL IY GV+ +I + PD Sbjct: 2 RILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPTADLPTRLGTIYDGVSTLIREHTPD 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE+VF+ N S L LGQARG AI V+ LPV EY A Q+KQ VVG G A K Q+ Sbjct: 62 QAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKEQM 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQN-------AMQMSESRLNLARGRL 172 Q MV LL L P DAADAL +AI H H A +++ L + RGRL Sbjct: 122 QEMVARLLSLSGRPGTDAADALGMAICHAHGGNTLNTLGGIAPALAKKGLRVRRGRL 178 >UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=beta proteobacterium KB13 RepID=B6BW71_9PROT Length = 175 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 4/173 (2%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQF 59 ++GIDPG R+TGYG++ ++ +Y+ SG I+T + LP RLK+I+ V+EI+++ Sbjct: 4 TRVIGIDPGLRITGYGIVDCENKKTTYITSGVIKTTSEKLPYPERLKIIFDEVSEIVSKH 63 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 QP+ IE+ F+ NA+S+L LGQARGVA+ A + +L ++EY A Q+K++VVG G AEK Sbjct: 64 QPNQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNGHAEK 123 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 QVQ MV+ LL LP D++DALA + H V Q + S +N GR+ Sbjct: 124 IQVQSMVQKLLNLPEVLGPDSSDALACVLCHNQVMQ--INQDNSPINFKGGRI 174 >UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=Bacteria RepID=RUVC_CLOCE Length = 166 Score = 234 bits (597), Expect = 1e-60, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 2/165 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 II+GIDPG +TGYGV++ G + S L I T RL ++Y + ++I +F+P Sbjct: 2 IIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +IE++F KN +AL +G RGVA++AA + +FEY QVKQ+VVG G AEK+Q Sbjct: 62 DAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRL 165 VQ MV+ +L LPA P+ D ADALA+AI H + + + R Sbjct: 122 VQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMGALLGNDRF 166 >UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Gammaproteobacteria RepID=RUVC_PSYWF Length = 194 Score = 232 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 97/185 (52%), Positives = 120/185 (64%), Gaps = 13/185 (7%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAII+GIDPGSR+TGYG+I Q G L YL +G IRT ++P RLK I+ G+T ITQ+ Sbjct: 1 MAIIIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKEMPERLKRIFQGLTR-ITQYH 59 Query: 61 ------PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 P + A+EQVFMA+N DSALKLGQARG AI A V +L V EY ARQ+KQ+V G Sbjct: 60 LKYSDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGY 119 Query: 115 GSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ------MSESRLNLA 168 G+A+K QVQ MV +LKL PQ DAAD LA AI H H S + + + + Sbjct: 120 GAADKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHSMNKLLMNSTLRGRGTSKK 179 Query: 169 RGRLR 173 +GR R Sbjct: 180 KGRWR 184 >UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Bacteria RepID=RUVC_RUBXD Length = 179 Score = 232 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ G+GV+RQ G +L Y+ G I T +P RL ++AGVTE+I ++P Sbjct: 9 VILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E++F N +A+ +GQARGVA++AA + VFEY QVKQ + G A+K Q Sbjct: 69 SAVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMS 161 VQ MVR LL L + P+ DAAD LAIAI H + + Sbjct: 129 VQEMVRALLGLRSIPRPDDAADGLAIAICHAFSHRMSAATG 169 >UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Bacteria RepID=RUVC_PELTS Length = 164 Score = 232 bits (593), Expect = 4e-60, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 2/153 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +I+G+DPG+ +TGYG++ G + + + GCIRT RL+ +Y + EII + +P Sbjct: 2 LIMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++FA+E++F KN +AL +GQARGV ++AA LPVFEY QVKQ V G G A K+Q Sbjct: 62 EHFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKTQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHV 153 VQ+MV+T+L LP P D ADALA+AI H H Sbjct: 122 VQYMVKTILALPEVPAPDDVADALAVAICHAHH 154 >UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Clostridia RepID=RUVC_THETN Length = 165 Score = 232 bits (593), Expect = 4e-60, Method: Composition-based stats. Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 2/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GYGV+ + S + G I T D RL +Y G+ +II ++P Sbjct: 2 RVLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE++F KN+ + + +G+ RG++I+AAVN + V+EY QVKQ VVG G AEK Q Sbjct: 62 EIVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 VQ MV+ LL L P+ D ADALA+AI HCH + ++ R Sbjct: 122 VQQMVKVLLNLDEIPKPDDVADALAVAICHCHSNNMLERLGYGR 165 >UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Clostridia RepID=RUVC_HALOH Length = 165 Score = 229 bits (586), Expect = 2e-59, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +ILG+DPG + GY +I + G + + G I T + RLK+I+ + II ++ P Sbjct: 2 VILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESVDRLKIIHTDMVNIINKYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E++F KN +A+++GQARGV ++A L ++EY QVKQ V G G A KSQ Sbjct: 62 DQMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKSQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 VQ MV+ LL L P+ D ADALAI+I H + + Sbjct: 122 VQRMVKALLNLNEIPKPDDVADALAISICHGNSYR 156 >UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=cellular organisms RepID=RUVC_BREBN Length = 166 Score = 228 bits (583), Expect = 5e-59, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG + G+GV+ + G QL + G I+T+ +P RLK I+ + ++ ++P Sbjct: 2 RILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D ++E++F KN +A +GQARGV I+AA +PV+EY QVKQ V G G AEK Q Sbjct: 62 DEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKKQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVS 154 +Q M + LL+L P+ D ADAL IAITH Sbjct: 122 IQEMTKLLLRLKEVPKPDDVADALGIAITHAQFR 155 >UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Bacteria RepID=RUVC_CALS8 Length = 166 Score = 228 bits (582), Expect = 7e-59, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 3/163 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG +TGYG+I + G + + G I T RL +Y + II+ +Q Sbjct: 2 RVLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQ 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE++F +KN+ +A+ +G+ARGV I+ + L ++EY QVKQ++ G G A+K+ Sbjct: 62 PDVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKT 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSE 162 Q+Q MV++LL L P+ D ADALA+A+ H S + + + Sbjct: 122 QIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQED 164 >UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Gammaproteobacteria RepID=RUVC_PSEHT Length = 174 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 110/173 (63%), Positives = 133/173 (76%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGSR+TGYGV+ G + +YLGSGCI+ + RLK+IY G+T++I QF Sbjct: 1 MAIILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKLADHEFHIRLKMIYQGITQLIEQFS 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ FAIE+VFMA N DSALKLGQARG AIV A +LPVFEY+ARQ+KQ VVG G A+K+ Sbjct: 61 PETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKT 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QVQHMV+ +LKLP PQADAADALAIAI H H QN ++++ S RGRLR Sbjct: 121 QVQHMVKNILKLPGTPQADAADALAIAICHAHSEQNLIKLAGSASKTVRGRLR 173 >UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bacteria RepID=RUVC_CLOD6 Length = 169 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG + GYG+I + + G + T ++ RL+L+Y G+ I+ + Sbjct: 2 IILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYNI 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +E++F KN +A+ + QARGV ++A + PV+EY QVKQ VVG G A+K+Q Sbjct: 62 DEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 VQ MV + L L P+ D ADALA+AI H H ++ Sbjct: 122 VQQMVTSFLSLKKVPKPDDVADALAVAICHAHSNK 156 >UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RUVC_NATTJ Length = 161 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQP 61 II+G+DPG GYG+I G +L L G +RT D+ RL+ IY GV+ +I++F P Sbjct: 2 IIMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFSP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E +F AKN+ +A+K+GQA+GV ++AA + L +FEY QVKQ V G GSA K Q Sbjct: 62 NTVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQM 160 VQ MV+ +L L P+ DAADALA+++ H + ++ Sbjct: 122 VQKMVKQILSLDKIPKPDDAADALAVSLCHSQAYRLRTRL 161 >UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Deltaproteobacteria RepID=RUVC_PELCD Length = 161 Score = 226 bits (577), Expect = 2e-58, Method: Composition-based stats. Identities = 85/154 (55%), Positives = 108/154 (70%), Gaps = 1/154 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG+R+TGYG+I ++G +L ++ +G I T+ D L RLK IY G++ +I + P Sbjct: 2 RILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E++F+AKNA SALKLG ARGVA++A VN LPV EY A +VKQ VVG G A K Q Sbjct: 62 TGVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKPQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 VQ MVR LL LP Q DA+DALA+AI H H Sbjct: 122 VQQMVRVLLNLPEIAQEDASDALAVAICHAHCFH 155 >UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Ruminococcaceae RepID=D1PPB4_9FIRM Length = 194 Score = 224 bits (572), Expect = 9e-58, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 2/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG + G+GV+ VG + S +G G I T+ D RL IY V ++ ++ P Sbjct: 31 RVLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRRYAP 90 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + +IE+++ N + + + +ARGV ++AA +P++EY QVKQ + G G A K Q Sbjct: 91 EALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAVKKQ 150 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 +Q M R +L L P+ D ADAL +AI HCH S++ + ++ R Sbjct: 151 IQEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRSRLMGTQPR 194 >UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=4 Tax=Moraxellaceae RepID=C8PU79_9GAMM Length = 200 Score = 222 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 7/163 (4%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR--TKVDDLPSRLKLIYAGVTEIITQ 58 M+I +GIDPGSR+TGYG+IR G +L +L +G I ++ + +P RLK I+ G++ I+ Sbjct: 1 MSIFIGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEH 60 Query: 59 FQ-----PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVG 113 +Q P AIEQVFMA N D+ALKLGQARG AI A V ++L V EY ARQ+KQ V G Sbjct: 61 YQKYTNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCG 120 Query: 114 IGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 G+A+K Q+Q MV LL L PQADAAD LA AI H + SQ Sbjct: 121 YGAADKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQT 163 >UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=7 Tax=Gammaproteobacteria RepID=RUVC_DICNV Length = 176 Score = 221 bits (565), Expect = 7e-57, Method: Composition-based stats. Identities = 90/158 (56%), Positives = 110/158 (69%), Gaps = 2/158 (1%) Query: 1 MAI--ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 MAI ILGIDPGSR+TGYG+I G + Y+ SGCIR +P RL I+ G+ E++ Q Sbjct: 1 MAICRILGIDPGSRITGYGIIDVRGTAIDYVDSGCIRLATQLMPQRLMTIHQGIFELVQQ 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P FAIE +F+ KN +SALKLGQARGVAI AAV L + EYAA+ +KQ VVG G A+ Sbjct: 61 YHPQQFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 K QVQHMV+ LL Q+DAADALA+AITH H Q Sbjct: 121 KIQVQHMVKILLNRQGAIQSDAADALAVAITHAHHLQT 158 >UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK51_9FIRM Length = 164 Score = 219 bits (560), Expect = 2e-56, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDY 63 LGIDPG+ + G+G + G +L G I T + RL IY + +I +++PD Sbjct: 4 LGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMEDRLMKIYDELDALIKKYKPDV 63 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 +E++F +N +A+ +GQARG+ ++ A L + E Q+KQ V G G A+K QV Sbjct: 64 MGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKKQVI 123 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 +MV +L LP P+ D ADALAIAI H + Sbjct: 124 YMVTKILNLPEPPKPDDTADALAIAICTTHCLNS 157 >UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Magnetococcus sp. MC-1 RepID=RUVC_MAGSM Length = 180 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 107/171 (62%), Gaps = 2/171 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 ++GIDPGS VTG+GVI +G++ + G IR + LP RL I+A + +I + Q Sbjct: 7 IRVIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQRLQ 66 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF+++N SALKLG ARG AIVA LP+ EY A QVK+ VVG G AEK+ Sbjct: 67 PHEMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRAEKN 126 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESRLNLARG 170 Q+Q M+R LL L P DAAD LAIA+ H + Q + + + L L RG Sbjct: 127 QMQEMMRMLLNLDKKPAQDAADGLAIAMCHLNQRQWHQQTLPAAILGLQRG 177 >UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Methanomicrobiales RepID=Q2FQ00_METHJ Length = 164 Score = 218 bits (556), Expect = 6e-56, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 7/160 (4%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT--KVDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GYGV+ + GCI T K D P RL IY + +I + P Sbjct: 8 VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A E++F ++N +A+++ +A+GV I+AA ++PVFEY +QVK + G G A+K Q Sbjct: 68 ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQM 160 +Q M+ LL+L PQ DAAD LA+A+ H N M+M Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALALCHV----NWMRM 163 >UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA55_CHRVI Length = 178 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 95/157 (60%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR TG+GVI G + SGCIR P RL LI+ V I+ ++QP Sbjct: 10 RILGIDPGSRNTGFGVIDTDGHHSVRVASGCIRVGEHPWPDRLGLIFDQVAAIVAEYQPH 69 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+EQ+ A++ +ALK+GQARG + A + V EY+ + VK VVG G A+KSQV Sbjct: 70 EMAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGADKSQV 129 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 QHMVR LL LP P D ADALAIA+ H H + Sbjct: 130 QHMVRVLLALPETPGEDEADALAIALCHAHSMGIPAR 166 >UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=267 Tax=cellular organisms RepID=RUVC_ACTP2 Length = 192 Score = 214 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 127/162 (78%), Positives = 139/162 (85%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IILGIDPGSRVTGYGVIRQ GR L YLGSG IRT VDDLP+RLK IYAGVTEIITQF Sbjct: 1 MPIILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVDDLPTRLKRIYAGVTEIITQFH 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FAIEQVFMAKNADSALKLGQARG AIVAAVN +LPVFEYAAR VKQTV GIGSA+K Sbjct: 61 PDMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKI 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 QVQ MV +L+L + PQADAADALAIAITH H Q+++ +++ Sbjct: 121 QVQDMVTRMLQLSSKPQADAADALAIAITHAHSIQHSLIVAK 162 >UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Gammaproteobacteria RepID=RUVC_ALCBS Length = 172 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 94/173 (54%), Positives = 124/173 (71%), Gaps = 1/173 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MA+ILGIDPGSR TGYGV+ VG + + G I T ++P RL I+AG+ +++ ++ Sbjct: 1 MALILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTSHKEIPPRLGEIFAGIDQVVKEYG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +IE+VFMA+NADSALKLGQARG AI A + +PVFEY+ARQVKQ VVG G AEK+ Sbjct: 61 PAEVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKN 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QV MV+ LLKL PQ DAADALAIA+ H H+ + +M+ + ++ RGR+R Sbjct: 121 QVGEMVKYLLKLDQRPQEDAADALAIALCHAHMRLSLARMAGA-TSVRRGRVR 172 >UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxyribonuclease RuvC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYN7_9BACT Length = 155 Score = 213 bits (543), Expect = 2e-54, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 104/152 (68%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG+ + GYGVI + G ++ + G I+T K + P RLK IY GVTE+IT ++PD Sbjct: 3 ILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYKPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E+VF KN +A+K+G+ RG+ + A +P+ EYAAR VK+ V G G+A K +V Sbjct: 63 HMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKGKV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHV 153 Q MV+ +L LP PQ DA+DALAIAI H H Sbjct: 123 QEMVKAILGLPEIPQPEDASDALAIAICHGHR 154 >UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=18 Tax=cellular organisms RepID=RUVC_ACISJ Length = 186 Score = 211 bits (539), Expect = 6e-54, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 107/174 (61%), Gaps = 7/174 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-------DDLPSRLKLIYAGVTEI 55 ILGIDPG + TG+GV+ G +L Y+ SG +RT DLP RLK+++ GV+E+ Sbjct: 2 RILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSEV 61 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 ++QP A+E +F+ N S L LGQARG A+ A VN LPV EY A Q+K+ VVG G Sbjct: 62 AARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGHG 121 Query: 116 SAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 A KSQVQ MVR LL+LP P DAADAL +AITH H ++ E R Sbjct: 122 RAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAHAGAAMARVGEVAQLTRR 175 >UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Bacteroidetes RepID=C7PP44_CHIPD Length = 202 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG+ V GYG+I G + S L ++ ++ D RL+LI+A V E+I + +P Sbjct: 23 IILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIREHKP 82 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE F KN S LKLG+A+GVAI A+ +PV EYA ++VKQ++ G G+A+K Q Sbjct: 83 VSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNADKEQ 142 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITH 150 + M++ +L P+ DA+DALA+A+ H Sbjct: 143 IWQMLQRILHFNERPEFLDASDALAVAVCH 172 >UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Proteobacteria RepID=RUVC_XANOP Length = 174 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 101/159 (63%), Gaps = 2/159 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQ-VGRQLSYLGSG-CIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG G+I G + ++ I D RLK + G+ E+I Sbjct: 1 MTRILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIET 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++PD AIE+VFM K+A SALKLG ARG AI A V ++LPV EYAA +VK +VG G A+ Sbjct: 61 YRPDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNA 157 K QVQHMV +L L Q DAADALA+AITH HV A Sbjct: 121 KVQVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATA 159 >UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRB0_SYNAS Length = 181 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPD 62 +LGIDPGS VTG+G++ Q+ + + G IR K S L+ IY + ++ + QPD Sbjct: 25 VLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVEREQPD 84 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F KN S +K G RGVAI+A LPVFEY ++K+ VVG G AEK QV Sbjct: 85 AVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAEKIQV 144 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 Q+M++ ++KL P ADA+DA+A+AI H + + Sbjct: 145 QNMIKVIMKLSELPPADASDAIAVAICHLNHQK 177 >UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=Gammaproteobacteria RepID=RUVC_XYLFT Length = 173 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 86/165 (52%), Positives = 107/165 (64%), Gaps = 2/165 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQV--GRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG GVI G + + RLK + G++ +I + Sbjct: 1 MTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEE 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P AIE+VFM+KNADSALKLGQARGVAI A V ++LPV EYAARQ+K VVG G A+ Sbjct: 61 YSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSES 163 K Q+QHMV +L L Q+DAADALA+AITH HVS A ++ S Sbjct: 121 KQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQRLGVS 165 >UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Treponema RepID=RUVC_TREPS Length = 196 Score = 208 bits (531), Expect = 5e-53, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 2/159 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQF 59 ++II+GIDPG TGYGVI G L L G I T+ +RL+ I+ + ++I+ + Sbjct: 16 VSIIVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQPSAARLRHIFDTLQQVISIY 75 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 QP Y A+E ++ AKN SAL + QARGV ++A Q + V EYA +K+ + GI AEK Sbjct: 76 QPQYCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEK 135 Query: 120 SQVQHMVRTLLKLPANPQAD-AADALAIAITHCHVSQNA 157 QVQH+V+ LL L P D AADALA+A+TH H ++ Sbjct: 136 RQVQHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSS 174 >UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Acidobacteria RepID=RUVC_SOLUE Length = 166 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+D GS TG+GVI G + +G IRT RL I + +I + P Sbjct: 2 RVLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHTP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++ A+E+VF A NA +ALKL RGVA++ + EY+ +VK +VVG G AEKSQ Sbjct: 62 EFAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKSQ 121 Query: 122 VQHMVRTLLKLPA-NPQADAADALAIAITHCHVSQNAMQMSESR 164 VQ MV++LL+LP DA+DALAIAI H + A + SR Sbjct: 122 VQMMVQSLLRLPEVIASEDASDALAIAICHA--THQATHEATSR 163 >UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=14 Tax=Bacteria RepID=RUVC_THEAB Length = 157 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+G+DPG + GYG++ + ++S++ G I T+ D + RL IY E++ ++ P Sbjct: 2 RIIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYSP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE +F KN +A+ +G+ARGV ++A+ + +P++E+ QVK V G G A+K Q Sbjct: 62 DACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKKQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 VQ MV+ LL L P+ Sbjct: 122 VQKMVKMLLNLNDIPKP 138 >UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=69 Tax=Bacteroidetes RepID=RUVC_CYTH3 Length = 200 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+ V GYG+I G QL+ + G I D +L I+ ++ +I ++ P Sbjct: 13 IILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHP 72 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F N S LKLG+A+GVAI AA+++++P+FEYA +++KQ+V G G+A K Q Sbjct: 73 DEMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQ 132 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITH 150 V M+ +L P+ DA DAL +A+ H Sbjct: 133 VAAMLSKILFFQEIPKLLDATDALGVAVCH 162 >UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Gammaproteobacteria RepID=RUVC_THICR Length = 172 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 90/137 (65%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 + ILGIDPGSR TG+G+I +Y+ SG IR + RLK I+ V +II Q+Q Sbjct: 4 LKRILGIDPGSRKTGFGIIESGRFHPNYVSSGVIRVEKLTGAQRLKTIFESVCQIIDQYQ 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIE+VF+ KN SA+KLGQARGV + AA +E+P+ EY Q+K T+VG G A K Sbjct: 64 PHVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGHATKD 123 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQ MV+ LLKL +PQ Sbjct: 124 QVQFMVQNLLKLTESPQ 140 >UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGL8_KOSOT Length = 168 Score = 204 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 88/138 (63%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG GYG+I G ++S +G G I+TK + +P+RL IY + EI+ +++ Sbjct: 6 TRILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEIVEEYR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE++F +N +A+++G+ARGV ++ +P+FEY QVKQ+V G G +EK Sbjct: 66 PDEAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYGRSEKG 125 Query: 121 QVQHMVRTLLKLPANPQA 138 Q+Q +++ L + P+ Sbjct: 126 QIQRVMKKFLGMNETPKP 143 >UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Bacteria RepID=C3JAC1_9PORP Length = 192 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 4/168 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+++ GYG+IR Q L G I +D RL I+ +T +I +F P Sbjct: 8 IILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIEEFLP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E F KN S LKLG+A+G A++A + + LP+ EYA ++KQ++ G GSA K Q Sbjct: 68 DEMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSASKEQ 127 Query: 122 VQHMVRTLLKLPA---NPQADAADALAIAITHCHVSQNAMQMSESRLN 166 V M++ +L +PA DA D LA+A+ H + + N + S+ + Sbjct: 128 VAAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSNTLASSDKVIR 175 >UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease RuvC n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CBE Length = 164 Score = 203 bits (517), Expect = 2e-51, Method: Composition-based stats. Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 I+LGIDPG+ TGYGV+ Q ++ L G I T L RL I+ + E+I + +P Sbjct: 2 IVLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ NA SA +GQARGV ++AA +L Y +Q+K V G G AEK Q Sbjct: 62 VAVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKLQ 121 Query: 122 VQHMVRTLLKLPANPQAD-AADALAIAITHCHVSQNAMQMSES 163 VQ MV+ LL L P+ D AADALA+AI H + + A M + Sbjct: 122 VQQMVQRLLSLTELPRPDHAADALAVAICHTNRAPLAAAMVSA 164 >UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A616_GEMAT Length = 181 Score = 202 bits (514), Expect = 4e-51, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 87/138 (63%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 +++LGIDPG+ VTGYGV+ GR + + G IRT D LPSRL I+ GV E+I + + Sbjct: 5 SLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELIARHR 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +IE VF A+N + L LG ARGV ++A EL + EYA ++K+ + G G A K Sbjct: 65 PDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGGATKE 124 Query: 121 QVQHMVRTLLKLPANPQA 138 QVQ+MV LL L P+ Sbjct: 125 QVQYMVARLLHLKHAPEP 142 >UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N025_9BACT Length = 211 Score = 201 bits (512), Expect = 9e-51, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 101/172 (58%), Gaps = 5/172 (2%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQPDY 63 +GIDPG+ GYGV+ GR++ + G I + P +L+ I+ V ++ +++P Sbjct: 1 MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F +N S LKLG+A+GVA+ AA+++ L VFEYA ++KQ + G GSA K QV Sbjct: 61 VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLQVFEYAPTRIKQCITGRGSAPKEQVA 120 Query: 124 HMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQ--MSESRLN-LARGR 171 +V ++L + P + DA D +A+A+ H +S N + + E R L GR Sbjct: 121 ALVSSMLTIERPPRRLDATDGMAVALCHHFMSSNPLNGALGEDRFKGLGGGR 172 >UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2T3_9GAMM Length = 178 Score = 201 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M ILGIDPGSR TG+G+I G+++ ++ +G + + RLK I+ G+T++I ++Q Sbjct: 1 MPRILGIDPGSRKTGFGIIELDGKKIKHVINGRLMVGDGEFADRLKQIFEGLTDLIDRYQ 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE+VF+ KNADSALKLGQARG AI AAV+++L V EY+A Q+K+ VVG G A+K Sbjct: 61 PEMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKD 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ--NAMQM--SESRLNLARGR 171 QVQ+M+ +L LP P+ DAADALA A+TH + + N + R + GR Sbjct: 121 QVQYMMSVILSLPEVPEEDAADALACALTHANHASIGNPQRKLPEGMRTSRRGGR 175 >UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Desulfovibrionaceae RepID=RUVC_LAWIP Length = 168 Score = 201 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQF 59 M ++GIDPGSR TG+G++ +V L + G I+ RL I+ ++ II ++ Sbjct: 1 MISVIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKY 60 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P ++EQVF A+N +ALKLGQARG A+VA NQ L + +Y A +K+T+VG G A K Sbjct: 61 KPVEASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATK 120 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITH 150 QV MV L + + D +DALA AI H Sbjct: 121 EQVSFMVGRSLGVKPDWPIDTSDALATAICH 151 >UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Chlorobiaceae RepID=RUVC_CHLCH Length = 192 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV++ S L +G IR + P R+ +I + ++I +FQP Sbjct: 2 IVLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E F++ N +ALKLGQ RG I V LP++EYA R+VK + G G+A K Q Sbjct: 62 ERVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLNLAR 169 V MV +L L P+ D DAL IA+ ++ R N R Sbjct: 122 VAFMVSRMLSLHTVPKPHDVTDALGIALCDILRGESRQSGVPPRTNSRR 170 >UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI8_9BACT Length = 159 Score = 200 bits (509), Expect = 2e-50, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 II+G DPGSR GYG+++ R++ G I T+ L RLK +Y + +I+ ++ P Sbjct: 2 IIIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYHP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E +F + S LG +RGV ++A QE+PV EY+ R++K++V G G+A K Q Sbjct: 62 EIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQQ 121 Query: 122 VQHMVRTLLKLPANPQADAA-DALAIAITHCHVSQ 155 V++M+ L L +P+ D A DALA+A H + + Sbjct: 122 VRYMINQLYPLKESPKRDDAFDALAVATCHYNRMK 156 >UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=20 Tax=Gammaproteobacteria RepID=RUVC_FRAT1 Length = 171 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +ILGIDPGSR+TG+GVI+ ++ Y+ SGCIR P RLK I G+T+II + P Sbjct: 2 VILGIDPGSRITGFGVIKVQDNKIYYVASGCIRITEITTPKRLKQIADGITQIINIYAPT 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIEQ+FM +N A+KLGQARGVA+ L V EY+A+Q+KQ VVG G A KSQV Sbjct: 62 EAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKSQV 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE-SRLNLAR 169 QHMV++LL L P DAADALAIAI H H S++ ++S SR++ R Sbjct: 122 QHMVQSLLGLSKKPPEDAADALAIAICHYHSSKSLAKISGASRVSQKR 169 >UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Proteobacteria RepID=RUVC_THIDA Length = 171 Score = 199 bits (507), Expect = 4e-50, Method: Composition-based stats. Identities = 89/170 (52%), Positives = 116/170 (68%), Gaps = 1/170 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG R+TG+G+I Q G++L+Y+ SG +++ LP+RL +++ G+ E+I ++PD Sbjct: 2 RILGIDPGLRLTGFGLIEQTGQKLAYVASGVVKSGEGSLPARLGILFGGINEVIATYRPD 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF+ N S L LGQARG AI AAV+ +L V EY A Q+KQ VVG G A K+QV Sbjct: 62 TCAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKTQV 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 Q MV+ LL LP P ADAADALA AITH H S+ Q S + L GRL Sbjct: 122 QEMVKRLLALPIAPTADAADALACAITHAHGSRLGAQ-STAGYRLKGGRL 170 >UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=uncultured archaeon RepID=D1JHV6_9ARCH Length = 162 Score = 198 bits (505), Expect = 6e-50, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 2/156 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 ++GIDPG+ TG+GV+ +L + G ++T RLK IY + +I P Sbjct: 2 RVIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVTP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE +F N +AL +GQARGV ++AA ++P +EY +VK + G G A KS+ Sbjct: 62 DVMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKSE 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 V V LKL P+ D DALAIA TH + N Sbjct: 122 VATSVMEKLKLEEMPKPDDVTDALAIAATHIIRNSN 157 >UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RUVC_THEYD Length = 156 Score = 197 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 4/159 (2%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF 59 M +I GIDPGSR GYG++ Q+ + + I D LP RLK IY + ++ ++ Sbjct: 1 MTVI-GIDPGSRHFGYGIVDAK--QMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKY 57 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 PD A+E++F+ K S+ LG AR +A + A +E+PV+EY++ ++K+ + G G A K Sbjct: 58 SPDEMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHK 117 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 QV+ MV L + D ADALA+AI H + N M Sbjct: 118 VQVKSMVYNFLHIDKKISYDCADALAVAICHINSKTNFM 156 >UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEQ0_RHOM4 Length = 191 Score = 197 bits (502), Expect = 1e-49, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 5/171 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 IILGIDPGSR TGYGV+ G + L I P RL ++ + I+ +++P Sbjct: 12 IILGIDPGSRHTGYGVLAVEGERARVLAVDVIHLDEQAAHPLRLLRLFEQLGAIVERYRP 71 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +N S LKLG+A+ A++A + +++P EY ++VK+ + G G+A K Q Sbjct: 72 DECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATKEQ 131 Query: 122 VQHMVRTLLKLPANP---QADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 V+ MV+ LL+LPA DA+DALA+A+ H + + AR Sbjct: 132 VRFMVQALLELPAEAARLALDASDALAVAVCH-WQHRTCPHAPRRYSSWAR 181 >UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQQ7_DESBD Length = 173 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 95/153 (62%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IILG+DPGSR GYG++R+ LS + +G +R + + +RL L+Y ++E++ P Sbjct: 6 IILGVDPGSRCMGYGLVRERSGVLSLVEAGVVRPGEEAMSARLGLMYTRISELLHAHSPH 65 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF A+N+ SALKLGQARG + A VF Y VK+++VG G AEKSQV Sbjct: 66 AVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGRAEKSQV 125 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 MV LL + + DA DALA+AI H + S+ Sbjct: 126 SFMVGQLLGVKPDWAEDAGDALALAICHLNHSR 158 >UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Planctomycetaceae RepID=D2QZ57_9PLAN Length = 186 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPG +TGYGVI VG + +G +R + L +R+ IYAG+ ++I P Sbjct: 15 RVLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQSLAP 74 Query: 62 DYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 AIE+++ + +A+ +G ARG ++A +PV YA+ QVK+ + G G A K Sbjct: 75 TELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRAPKD 134 Query: 121 QVQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMSESRLN 166 Q+Q+ V LKL A P+ D ADALAIA+ H H+S++ + ++ L Sbjct: 135 QMQNAVCRELKLAAPPEPPDVADALAIALCHIHLSRSGLHIATPGLT 181 >UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=27 Tax=Epsilonproteobacteria RepID=RUVC_CAMJR Length = 160 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 1/149 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPGSR GY +I + + +G I+ K L ++ + G+ I D Sbjct: 5 ILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQYQITELCEGLDLIFKNHSFDE 64 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE +F A N + LKL Q RG + + EY QVK+ V G A K QV Sbjct: 65 VAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKEQVA 124 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHC 151 MV+ LL L + + D DA+A+A+TH Sbjct: 125 FMVKRLLGLSKDIKPLDITDAIAVALTHA 153 >UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Thermotogaceae RepID=RUVC_FERNB Length = 166 Score = 196 bits (499), Expect = 3e-49, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 ILGIDPG + GYGV+ ++G +++Y+ G I+T+ + RL IY V EII ++ P Sbjct: 2 RILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE ++ KN +A+ +G+ARGV ++A + +P E+ QVK TV G G AEK+Q Sbjct: 62 ELVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKTQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 +Q +++ LLKL P+ Sbjct: 122 IQKVMKILLKLNEIPKP 138 >UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Chlorobiaceae RepID=RUVC_PROA2 Length = 187 Score = 195 bits (498), Expect = 3e-49, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV+ G++ S + G IR + R+K+IY + II ++ P Sbjct: 2 IVLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ +N SALKLGQ RG + +N+ L + EYA R+VK + G GSA K Q Sbjct: 62 QRLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ---NAMQMSESRLNLARG 170 V +M R L + + D DAL IA+ + + S SR + G Sbjct: 122 VSYMARHFLNIQEPIKPYDVTDALGIALCDLLCDAKGGSPRRGSGSRKSARGG 174 >UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RUVC_CHLT3 Length = 186 Score = 195 bits (497), Expect = 4e-49, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LG+DPGS VTGYGVI + IR D P R+K IY + ++I ++P Sbjct: 2 ITLGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E F KNA SALKLGQ RG I+ A+N L EY+ R+VK++V G G+A K Q Sbjct: 62 TQLSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLNLAR 169 V +MV+ +L + A D +DALAIA+ H +M SE + + Sbjct: 122 VAYMVKKMLSIDDEKMALDTSDALAIALCG-HFKSASMAASEFKKQSRK 169 >UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHV9_9GAMM Length = 171 Score = 195 bits (496), Expect = 6e-49, Method: Composition-based stats. Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 2/171 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGSR TG+G+I Q G ++ Y+ SG IR + L RL LIY V+EII QF P Sbjct: 1 MILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSP 60 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIEQVFM + DSALKLGQARG AI+A + V+EYAAR+VKQ+V G G+A+K Q Sbjct: 61 ACMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQ 120 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 + +MV+++LKLP PQ DAADALAIA+ H + + ++ + + RGR+ Sbjct: 121 IGYMVKSILKLPGVPQEDAADALAIALCHAYNHTGLVNIAGA-THSRRGRV 170 >UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Parachlamydiaceae RepID=RUVC_PARUW Length = 168 Score = 194 bits (495), Expect = 7e-49, Method: Composition-based stats. Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 IILG+DPG+++TG+GVIR G Q + GCIR L R +I GV ++I Q Q Sbjct: 5 VIILGLDPGTKITGFGVIRIEGHQYVPVDYGCIRPPSHYKLSERYLVICQGVEQLIDQHQ 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E +++KN SA+KLG ARGV ++AA + +P++EYA + K VVG G A K Sbjct: 65 PHAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVVGTGRASKY 124 Query: 121 QVQHMVRTLLKLPANPQA 138 QVQ MV+ LL L P Sbjct: 125 QVQGMVQRLLNLSIPPTP 142 >UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Sphingomonadales RepID=RUVC_SPHAL Length = 156 Score = 194 bits (495), Expect = 7e-49, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 IILG+DP TG+G+IR G ++S++ +G I+T LP RL + + +I P Sbjct: 2 IILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+VF+ N S LKL ARGV ++ L V +YA R VK+ +VG G A K Q Sbjct: 62 KCAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKGQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 VQ M+ LL DAADALA+AI H + + Sbjct: 122 VQAMLGVLLPGTKVAGPDAADALAVAICHANHRR 155 >UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Persephonella marina EX-H1 RepID=C0QT61_PERMH Length = 155 Score = 194 bits (495), Expect = 8e-49, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 +LGIDPG+ TG+ + + G++ + SG I+T P ++IY + I +F PD Sbjct: 5 VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKK-PENFRIIYESLERTINEFSPDE 63 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F N + +KLG+ RGV ++ + +PV+EY +QVK + G G A+K V Sbjct: 64 IALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGWAKKEDVY 123 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 MV+ L + D ADA+A+ HC Sbjct: 124 LMVQKLFNIKPETN-DEADAIAVGFCHCLSKN 154 >UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Coriobacteriaceae RepID=C8WP55_EGGLE Length = 192 Score = 194 bits (495), Expect = 9e-49, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 1/137 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG TG+G++ Q G +L+ GC+ T D L RL+ I+ + +I +F+P Sbjct: 8 ILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAVIARFEPA 67 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IE V+ N SA GQARG A+VA ++L V E++ Q+K VVG GSAEK QV Sbjct: 68 CVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTGSAEKDQV 127 Query: 123 QHMVRTLLKLPANPQAD 139 Q+MVR LL L P+ D Sbjct: 128 QYMVRQLLALEDIPRPD 144 >UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG18_THET1 Length = 171 Score = 194 bits (494), Expect = 9e-49, Method: Composition-based stats. Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 2/140 (1%) Query: 1 MAI-ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQ 58 M+I +LG+DPG+ + G+G++ G+ G IRT LP RL +I+ + E+I + Sbjct: 1 MSIRVLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEE 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +P++ A+E+VF A+ +AL +G ARGV ++ A LP+FEY QVKQ ++G G AE Sbjct: 61 LKPEHVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAE 120 Query: 119 KSQVQHMVRTLLKLPANPQA 138 K Q+Q ++ LL+L + P+ Sbjct: 121 KKQIQQFIKNLLRLESIPKP 140 >UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=6 Tax=Coriobacteriaceae RepID=C7ML17_CRYCD Length = 174 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQP 61 I++GIDPG TG+G++ Q G +LS GCI T L SRL IY + +I ++P Sbjct: 5 IVMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINHYRP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 IE ++ N SA GQARG A+VA ++ V EY +K VVG GSA+K Q Sbjct: 65 ACVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSADKHQ 124 Query: 122 VQHMVRTLLKLPANPQAD 139 VQ+MV +L L PQ D Sbjct: 125 VQYMVAQILGLATEPQPD 142 >UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJL7_ACIF5 Length = 185 Score = 193 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 I+GIDPGS TGYG+I +L ++ GC+ R+ IY + +II + Sbjct: 20 VRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLNVSGQPFLERIGAIYRELKQIIGTYH 79 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIEQVFMA+NADSALKLGQARG A+VA + LPV EY A Q+K+ VG G A K Sbjct: 80 PEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAAKE 139 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 QVQ MVR LLKL NPQADAADALA AI H H + + Sbjct: 140 QVQSMVRWLLKLSENPQADAADALACAICHAHHGRTRQR 178 >UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Rhodopirellula baltica RepID=RUVC_RHOBA Length = 178 Score = 193 bits (492), Expect = 2e-48, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 + ILGIDPG TGY VI + G +L +G I+++ D LP RL+ I+ G++E+ Sbjct: 14 SCILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHA 73 Query: 61 PDYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 D A+EQ+F + +A+ +G ARGV +AA + +PV Y +VK+ + G G A K Sbjct: 74 VDLMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPK 133 Query: 120 SQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSES 163 SQ+Q V+ L L + P+ D ADA+AI++ +++ N + + + Sbjct: 134 SQIQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANNPIDQALA 178 >UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Brachyspira RepID=RUVC_BRAHW Length = 160 Score = 192 bits (489), Expect = 4e-48, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 I LGIDPG GY I + SG I T + + RL IY + E+I +++P Sbjct: 2 ITLGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE++F +KN +A+K+ +ARGV I+A + EY ++VK + G G+A K Sbjct: 62 NNAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKDA 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 + MV L Q D ADA+AIA+ H ++ Sbjct: 122 MMKMV-NLFTGSNIIQDDTADAVAIALAHASRNR 154 >UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=7 Tax=Prevotella RepID=C9LHH6_9BACT Length = 235 Score = 190 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ + GYGV+ ++ G I + D+ +L I+ + II F P Sbjct: 34 VILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIGIIDSFHP 93 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F KN S LKLG+A+GVAI AA+++++P+ EYA ++K + G G A K Q Sbjct: 94 DELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGNGQASKEQ 153 Query: 122 VQHMVRTLLKLPA---NPQADAADALAIAITH 150 V ++ +L L DA DALA A H Sbjct: 154 VADFLKRILSLKEEQMLSYMDATDALAAAYCH 185 >UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLE5_9FIRM Length = 165 Score = 190 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 8/166 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG+ G+G++ + G ++ + G I T K + RL ++Y GV E+I ++P Sbjct: 2 RVLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + +E ++ N + +++ QARGV ++A Q +P QVKQ + G G AEK Q Sbjct: 62 HFMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKKQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLN 166 V MV ++ + DAADALAI +T + QM RL Sbjct: 122 VIEMVMRIMHINTKINPDDAADALAIGLTAIY------QMEHKRLF 161 >UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=canis group RepID=RUVC_EHRRW Length = 160 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 4 ILGIDPGSRVTGYGVI---RQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQF 59 I+GIDP TG+ ++ ++ + +G I T + RL IY+ + I+ + Sbjct: 3 IIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILNSY 62 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 + D ++E++F+ KN S+ L ARGV ++ +P+FEY+A +VK+++ G G A+K Sbjct: 63 KVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHAKK 122 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 QV M+ +L + + D +DA+A+AI H + + Sbjct: 123 EQVCFMIENILNIKCHGTYDISDAIAVAICHIYSIK 158 >UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Dictyoglomus RepID=RUVC_DICTD Length = 158 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 2/152 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +++G DPG+ +TGYG++ + +S + G + T + RL ++ V+ ++ + P Sbjct: 2 VVIGFDPGTAITGYGILNKGEDGISIIEYGALTTPSGWGIGRRLNYLFDQVSSLLDLYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +E +F KN +A+ +GQA+GV I+AA + + +VK +VVG G A K+Q Sbjct: 62 DVVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGRATKNQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCH 152 +Q+MV+ +LKL P+ D ADALA+ I++ + Sbjct: 122 IQYMVKEILKLKDIPKPDDVADALALCISYIY 153 >UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Synergistaceae RepID=D1BA53_THEAS Length = 165 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 82/148 (55%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 + LGIDPG GYG++RQ G LS G G I T LP RL ++ + + +P Sbjct: 6 LCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGELGGVRP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+++ +N +A + QARGV ++ A +PV E +VK V G G A+K Q Sbjct: 66 DLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGGADKRQ 125 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAI 148 VQ MV LL L P D ADALA+AI Sbjct: 126 VQLMVTGLLGLKRCPSPDDVADALAVAI 153 >UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Treponema denticola RepID=RUVC_TREDE Length = 178 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 1/139 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQ 60 ++GIDPG TGYG+I + + G I T+ L RL I+ V+E+I +++ Sbjct: 15 PCVIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSELIEKYR 74 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P IE ++ AKNA SA+ + +ARGV ++A + V EYA +K+ V GI AEK Sbjct: 75 PKEAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIAQAEKR 134 Query: 121 QVQHMVRTLLKLPANPQAD 139 QVQ V+ +L L P+ D Sbjct: 135 QVQEAVKLILGLKEIPRPD 153 >UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXA4_DYAFD Length = 174 Score = 189 bits (481), Expect = 3e-47, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 14 TGYGVIRQVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQPDYFAIEQVFMA 72 GYGVI G+Q+S + G I +LK I+ +T++I + PD AIE F Sbjct: 1 MGYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYG 60 Query: 73 KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 132 KNA S LKLG+A+GVA+ AA+ + +P+ EY+ ++VKQ+V G G+A K QV +M+ +LK+ Sbjct: 61 KNAQSMLKLGRAQGVAMAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKM 120 Query: 133 PANPQ-ADAADALAIAITHCHVSQNAMQMSE 162 + + DA D +AIAI H + + + ++ Sbjct: 121 ELSREFMDATDGIAIAICHQYHANSPASVAT 151 >UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1N9_9BACT Length = 172 Score = 189 bits (481), Expect = 3e-47, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 + LGIDPG GYG + Q G L GC+ T D R+K +Y GV E I P Sbjct: 9 VCLGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIENCSP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + ++E+++ +N +A + Q RG ++ LP+ E +VK TV G G+AEK Q Sbjct: 69 HFMSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAEKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAI 148 VQ M++ LL LP P+ D ADAL IA+ Sbjct: 129 VQLMIQQLLNLPEIPRPDDTADALGIAL 156 >UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=25 Tax=Epsilonproteobacteria RepID=RUVC_SULDN Length = 159 Score = 189 bits (480), Expect = 4e-47, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPG+R GY +I +++ + +G I+ K ++L ++ + I + D Sbjct: 3 ILGIDPGTRKMGYALISLEKGKIALIEAGLIKIKAEELQFQIPQMVEAFEGIFKNHKIDE 62 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE +F A N + +KL Q RG ++ + Q EY A QVK+ + G G A K QV Sbjct: 63 VAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKEQVA 122 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 M + LL + + D DA+A+AITH + Sbjct: 123 FMAKRLLNIKKEIKPLDITDAIAVAITHSQRVR 155 >UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_GEOLS Length = 178 Score = 188 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPGSR+TGYG++ Q G +L +L +G + T K D P RL+LI+ G++ +I ++ P Sbjct: 2 RVLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E V++++N +ALKLGQARG AI AAV+ LPVFEY A QVKQ VVG G A K Q Sbjct: 62 DAVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKEQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQ MV+ LL LP QADA+DA+A+AI H + Q +Q + R Sbjct: 122 VQKMVKALLGLPEIAQADASDAVAVAICHINSYQLRLQAGPAVATSRR 169 >UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_HALHL Length = 167 Score = 188 bits (478), Expect = 7e-47, Method: Composition-based stats. Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 2/137 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQF 59 M ILGIDPGSRVTGYG++ GR + G +R L RL I+ G+ E+I + Sbjct: 1 MTRILGIDPGSRVTGYGIVD-DGRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEH 59 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P A+EQVF+ +NAD+ALKLG ARG A+ A V LPV EYA ++KQ + G G A+K Sbjct: 60 RPQEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADK 119 Query: 120 SQVQHMVRTLLKLPANP 136 +QV +MVR LL+L +P Sbjct: 120 TQVGYMVRALLRLRTSP 136 >UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RUVC_WIGBR Length = 161 Score = 188 bits (478), Expect = 8e-47, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 107/156 (68%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M+II+GIDPGS VTGYG+I+ L ++ SG I K D RLK+IY + II +F+ Sbjct: 1 MSIIIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIFLKKHDFKKRLKIIYICIKNIINKFK 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P YF IEQ+F +KN S LKLGQA A +AA+N ++ +FEYA++++K+ +VG G A+K Sbjct: 61 PKYFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKL 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 QV++ V ++L L + D +DALA+AITH ++ N Sbjct: 121 QVKNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156 >UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Salinibacter ruber DSM 13855 RepID=RUVC_SALRD Length = 179 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 100/168 (59%), Gaps = 4/168 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++ G + + IR DD P+RLK IY + ++I P Sbjct: 2 IILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FA+E +N S LKLG+A+ A++AA+N++LPV +Y ++VK++V G G+A K Q Sbjct: 62 DEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKKQ 121 Query: 122 VQHMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQMSESRLNLA 168 V M+ ++L D ADALAIA+ H +++A +S A Sbjct: 122 VGFMIESILSAREQTFAHDTADALAIALCH--GNRDAHDDGDSYTGWA 167 >UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Dehalococcoides RepID=RUVC_DEHSC Length = 167 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG+ V GYG+I +L+ +G + +P RL IY G+ E+I +QP Sbjct: 2 RILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E F KN SAL +G+A+ VA++AA N LPV EY+ +K V G G+A K Q Sbjct: 62 DEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHC 151 +Q MVR LL L PQ DAADALA+AI H Sbjct: 122 IQEMVRLLLNLAEIPQPNDAADALAVAICHH 152 >UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Wolbachia RepID=RUVC_WOLPP Length = 165 Score = 185 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MAIILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQ 58 M I+G+DPG TG+ +IR + + +LG G I T + RL +I+ + ++I Sbjct: 1 MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P+ A+E++F+ KN S+L LG AR +AI+ +LP+ EY A +K+++ G G A+ Sbjct: 61 YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 K Q+ MV+ ++K ADALA AI H + Sbjct: 121 KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKN 157 >UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Alphaproteobacteria RepID=RUVC_GRABC Length = 178 Score = 185 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 8/172 (4%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG R TG+GVI G +L ++ G I T + +P+RL++++ +T ++ + Sbjct: 12 VRMLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLVTYH 71 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+ ++ +N + LKLG ARGVA++A + +PV EY A+ VK VVG G A K Sbjct: 72 PDEAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGATKD 131 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 QVQ MV+ LL +ADAADALA+AI H H SR ARG + Sbjct: 132 QVQMMVQRLLPGATLKRADAADALAVAICHAHHRA-------SRSAWARGAV 176 >UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RUVC_SORC5 Length = 179 Score = 185 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPGSR G+G++ + G ++ ++ G I +RL I + ++I P Sbjct: 2 RVLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +F AK+A SA KLG ARGV ++ +P+ EY VK+T+VG G+AEK+Q Sbjct: 62 DAAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKAQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITH 150 V ++ +L+L A P+ DAADALAIA+TH Sbjct: 122 VAQVMTAVLRLAAPPRPDAADALAIAMTH 150 >UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bdellovibrio bacteriovorus RepID=RUVC_BDEBA Length = 168 Score = 185 bits (471), Expect = 4e-46, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 1/150 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILG+DPGSR+TG+GV+R ++ ++ G I DD P R+ + + E++ +++P Sbjct: 4 VILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKYKP 63 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + IE++F+ KNADSA KLG ARGV + A V EYA R VK+ V G G A K Sbjct: 64 EQVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASKED 123 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHC 151 VQ +++ +L L + DA+DALA+A H Sbjct: 124 VQAILKVMLSLKTISRIDASDALAMACYHA 153 >UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDV8_ELUMP Length = 189 Score = 184 bits (469), Expect = 8e-46, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 3/153 (1%) Query: 1 MAIILGIDPGSRVTGYGVI-RQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQ 58 + +LGIDPG TG+ ++ R + G I + D LP RL+ I+ + ++ Sbjct: 6 LTTVLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEA 65 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++P++ A+E++F K A + + Q RGV ++AA + L + Y+ ++VK + G G+A Sbjct: 66 YKPNHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAG 125 Query: 119 KSQVQHMVRTLLKLPANPQA-DAADALAIAITH 150 K+Q+Q MV+ LKL P+ D ADA+AI I H Sbjct: 126 KAQIQRMVQLTLKLTKKPEPDDVADAIAIGICH 158 >UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=24 Tax=cellular organisms RepID=RUVC_PROM4 Length = 158 Score = 184 bits (469), Expect = 9e-46, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG GYG+I Q L G I+T D + R+ I + +I +++P Sbjct: 2 IILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E+ F ++ + +K+ QARGV I+ +P+ E+ Q+K V G G A K + Sbjct: 62 QIASVEKFFFYRS-STTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKDE 120 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 V V L L P+ DA+DALAIA+T + + Sbjct: 121 VSMAVIRELDLSKPPRPDDASDALAIALTAYYQQR 155 >UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Alphaproteobacteria RepID=RUVC_CAUSK Length = 169 Score = 184 bits (469), Expect = 9e-46, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 ILG+DPG R TG+GV+ G ++S++ G I + SRL ++ G+ +I + Sbjct: 9 IRILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVIDAHR 68 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+VF+ NA S LKLG AR A++A L V EY+ R VK+ VVG G+A+K+ Sbjct: 69 PDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAADKA 128 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVS 154 Q+ M+ LL AD ADALA+AITH ++ Sbjct: 129 QIGFMIARLLPTAGKTTADCADALAVAITHANLR 162 >UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA6_FIBSS Length = 189 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGS TGY +++ G Q+ L G +L RL I + + + + P Sbjct: 2 VILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYHP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E VF AKN SAL LG RG +VA + + EY + VKQ V G G+A K Sbjct: 62 DALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKEH 121 Query: 122 VQHMVRTLLKL-PANPQADAADALAIAITHCH 152 V +M+ L + + DA+DALAIA TH + Sbjct: 122 VANMIFAHLGIVGGDLPLDASDALAIAWTHAN 153 >UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=5 Tax=Gammaproteobacteria RepID=A4A9Q9_9GAMM Length = 172 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 78/137 (56%), Positives = 101/137 (73%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGS+ TG+G+I + + SY+ SG IR LP RL++I V E++ Sbjct: 1 MAIILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGALPERLRIIAESVAELVELHG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P ++EQVF+AK+AD+ALKLGQARG AIV V + L V EY+ARQ+KQ+VVG G+A+K+ Sbjct: 61 PTELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKA 120 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQHMV+ LLKLP PQ Sbjct: 121 QVQHMVKALLKLPGAPQ 137 >UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=61 Tax=Alphaproteobacteria RepID=RUVC_BRASB Length = 175 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+GIDPG R TG+GVI G +L Y+G G + D L +RL I+ G+ +++ FQ Sbjct: 10 VRIIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLANRLLAIHEGLAKVLNDFQ 69 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+EQ F+ K+ + LKLGQARG+A++A + V EYA QVK+TVVG G A+K Sbjct: 70 PLEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGHADKG 129 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESRL 165 Q+ M++ LL P ADAADALAIAITH H Q A++M + L Sbjct: 130 QIAVMLKILLPKAEPPSADAADALAIAITHAHHRQGQALRMKVAGL 175 >UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Borrelia turicatae 91E135 RepID=RUVC_BORT9 Length = 161 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSG-CIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG G+G++ + G + Y+ G I L RLKLI + II F+P Sbjct: 4 RILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFKP 63 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +IE ++ AKN +A+ + +ARG I+ + L +EY QVK ++ G G EK Q Sbjct: 64 DVASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKVQ 123 Query: 122 VQHMVRTLLKLPAN---PQADAADALAIAITH 150 V++++R LL + + ++DALA+AI H Sbjct: 124 VKYVIRILLGMKPDFIFTSDHSSDALALAICH 155 >UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZD1_METI4 Length = 169 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 65/151 (43%), Positives = 92/151 (60%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDP R TGYG+I G + G I T+ D +L+ IY + II ++ P+ Sbjct: 7 RILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTEHADQARKLRSIYERLLSIIQEYSPE 66 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E + +N +A+ +G ARGVA++ +ELPVFEY+ R++K G GSA K QV Sbjct: 67 HVAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGSARKEQV 126 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHV 153 M+R LL + + P DAADALA+A+TH H Sbjct: 127 SFMIRALLAMDSLPPLDAADALAVALTHVHH 157 >UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Alphaproteobacteria RepID=RUVC_ZYMMO Length = 167 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 92/156 (58%), Gaps = 1/156 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LG+DPG TG+G I G +LS++ +G IRT L RL L++ + +I QP Sbjct: 2 IFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+V NA S LKLGQARG+A+ + L V EY VK+ VVG GSA+K Q Sbjct: 62 EMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNA 157 VQ MV LL DAADALA+AITH H +A Sbjct: 122 VQAMVSRLLPGVKLAGPDAADALAVAITHAHHHASA 157 >UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=candidate division TM7 RepID=A5KTE8_9BACT Length = 158 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 I+GIDPG+ + G+GVI + + +G +RTK L RL IY + II +P Sbjct: 2 RIIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE++F A+N +A+ + ARGVA++A +L + EY Q+KQT+ G G A K Q Sbjct: 62 TIMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKKQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 +Q MVR L L P+ Sbjct: 122 IQEMVRLQLNLVEVPKP 138 >UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Orientia tsutsugamushi RepID=RUVC_ORITB Length = 159 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDP TG+GVI ++Y+ SG I+T D L +L I + ++IT+F P Sbjct: 2 IILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+VF+ KN S++ L QARG + + EYA ++K+ +VG G AEK Q Sbjct: 62 FHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKHQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAIT 149 VQ MV+ L+ + D +DALA A T Sbjct: 122 VQQMVKLLMHIKKAISKDESDALATAYT 149 >UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHM8_9BACT Length = 163 Score = 181 bits (460), Expect = 8e-45, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 AI++G+DPG TG G+++ ++ Y+ +RT D LP RL +I G+ + +++ Sbjct: 3 AIVMGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYK 62 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E VF + N SA+ LGQ RG I + ++ V E+ A Q+K+ VVG G A+K Sbjct: 63 PSCSAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQ 122 Query: 121 QVQHMVRTLLKLP-ANPQADAADALAIAIT 149 QV+ MV LL N D DALA I Sbjct: 123 QVKKMVEVLLGRKMGNVPLDVTDALACGIC 152 >UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Planctomyces RepID=A6C6Z1_9PLAN Length = 170 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDY 63 LGIDPG TGY +++Q + G IR+ + +L +R+ I +G+ E+I ++QPD Sbjct: 13 LGIDPGLNRTGYALLQQSVKGPVLCEGGIIRSNQEANLAARVHEIASGIREVIAEYQPDV 72 Query: 64 FAIEQVFMA-KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IEQVF + S++ + ARG + AA + +PV Y Q+K+ + G G A K Q+ Sbjct: 73 MVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITGSGRASKEQM 132 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 QH ++T L L A + D ADA A A+ H H + Sbjct: 133 QHAIKTELGLKAILEPNDVADAFAAALCHYHTIR 166 >UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Anaplasma phagocytophilum HZ RepID=RUVC_ANAPZ Length = 163 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IILGIDPGSRVTGYGVI-RQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQ 60 ++ G+DPG TG+ V+ ++ LS L +G I T DL +L I++G++ II +F Sbjct: 2 LVFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 +IE VF+ N +++ L AR +++A ++ + +FEY+ ++K+ V G G A K Sbjct: 62 VSVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASKE 121 Query: 121 QVQHMVRTLLKLPANP--QADAADALAIAITHCHVSQNA 157 Q+ +VR+ L L + + A+DA+A A+ H S N Sbjct: 122 QIAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGNR 160 >UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=10 Tax=Alphaproteobacteria RepID=RUVC_NITWN Length = 172 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 78/158 (49%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+GV+ G +L ++G G + T+ L SRL I+AG+ ++ QF+ Sbjct: 6 IRILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVLDQFR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIEQ F+ K+ + LKLGQARGVA++A + V EYA QVK+TVVG G A+K+ Sbjct: 66 PSEAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGHADKA 125 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 Q+Q M++ LL ADAADALAIAITH H ++A Sbjct: 126 QIQAMLKILLPKADPKSADAADALAIAITHAHHRKSAA 163 >UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SH09_9CAUL Length = 192 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+G+DPG R G+GV+ G +L+++ G I +L RL ++ ++++I ++ Sbjct: 6 IRIIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKVILLYR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIE+ F+ N S LKLG AR A++A L V EYAA VK++VVG G A+K Sbjct: 66 PQEAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAGRADKD 125 Query: 121 QVQHMVRTLLKLPANPQ----ADAADALAIAITHCHVSQNAM 158 Q+ M++ LL A + D ADALA+A+TH H ++ + Sbjct: 126 QILFMIKRLLPRAAAAENGLTPDMADALAVAVTHAHKRKHRL 167 >UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Chlamydiaceae RepID=RUVC_CHLT2 Length = 170 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 5/157 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +I+GIDPG+ V GY +I+ R + G ++ L R K ++ ++ I+ Q Sbjct: 4 LIMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQES 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E ++ KN S +KLG ARGV ++AA Q++PVFEYA K+ VG G+A K Sbjct: 64 PKAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKK 123 Query: 121 QVQHMVRTLLKLPANP---QADAADALAIAITHCHVS 154 QVQ MV LL++P D ADA A+A+ H H++ Sbjct: 124 QVQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160 >UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RUVC_UNCTG Length = 190 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 IILGIDPG +TG+GV+ R +++ L GCI+T L RL+ I + +I +++ Sbjct: 2 IILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKTMPSVPLIQRLQTINTKLQSVIDKYK 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ +IE++F K S +GQ RG I+ A ++P+FEY + VK + G GSA+K Sbjct: 62 PEVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGSADKY 121 Query: 121 QVQHMVRTLLKLPANPQA 138 Q+Q +V+T L+L P+ Sbjct: 122 QMQRIVKTFLRLKEIPKP 139 >UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaplasma RepID=RUVC_ANAMM Length = 165 Score = 179 bits (454), Expect = 4e-44, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 91/159 (57%), Gaps = 4/159 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +I+GIDPG TG+GV+ Q + L SG I T+ +L IY + +++ ++ Sbjct: 2 MIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYK 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 D +IE+VF+ N S++ L AR + ++ +++ + ++EY++ +K+ + G G A K Sbjct: 62 IDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKE 121 Query: 121 QVQHMVRTLLKLPANPQA--DAADALAIAITHCHVSQNA 157 QV MVR+ L + + + ++DA+A A+ H + ++N Sbjct: 122 QVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNR 160 >UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=cellular organisms RepID=RUVC_RICBR Length = 157 Score = 178 bits (453), Expect = 6e-44, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 I+LGIDP G+ V+ + +L YL SG I+T D++ RL I + + ++I +++P Sbjct: 2 IVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE+ F+ N+ ++LKLG ARG + +L + E+ +K+TV G G AEK Q Sbjct: 62 NMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKDQ 121 Query: 122 VQHMVRTLL-KLPANPQADAADALAIAITHCHVSQNA 157 + HM++ LL A +D ADA+AIA T C V++N Sbjct: 122 ILHMIKLLLPGTAAITNSDEADAVAIAYT-CLVTKNY 157 >UniRef50_D2UF38 Putative holliday junction resolvasome, endonuclease subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2UF38_XANAL Length = 207 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 80/162 (49%), Positives = 106/162 (65%), Gaps = 2/162 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQF 59 ILGIDPGS+ TG G+I + ++ +R D P RLK + G+ +I ++ Sbjct: 36 VRILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEGDFPQRLKRLLHGLDALIEEY 95 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P AIE+VFM K+AD+ALKLG ARG AI A V ++LPV EYAA+++K +VG G+AEK Sbjct: 96 RPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGKGAAEK 155 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS 161 QVQHMV +L L QADAADALA+AITH HV A ++ Sbjct: 156 QQVQHMVGLMLSLSGKLQADAADALAVAITHAHVRATAQRLG 197 >UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Desulfovibrionales RepID=RUVC_DESMR Length = 169 Score = 176 bits (447), Expect = 3e-43, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++R+ L + +G +RT D PSRL +I+ V E+I + P Sbjct: 8 IILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E VF++KNA +ALKLGQARG A+ A L V Y +KQ++VG G AEKSQ Sbjct: 68 AEVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQ 127 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 V MV +L DA DALA A+ H + + Sbjct: 128 VAFMVARVLACRETFAVDATDALAAAVCHLNQRR 161 >UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Cyanobacteria RepID=RUVC_TRIEI Length = 163 Score = 175 bits (444), Expect = 6e-43, Method: Composition-based stats. Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 9/144 (6%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-------LSYLGSGCIRT-KVDDLPSRLKLIYAGVTE 54 +ILG+DPG V G+G+I+ + S + G I+T K ++ RL IY + Sbjct: 4 LILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHT 63 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 I+ F+PD A E++F + ++ L + QARG+ I+A E+P+ E+ Q+KQ V G Sbjct: 64 ILNNFKPDLAATEKLFFYRMGNTIL-VAQARGILILALAQNEIPLIEFTPAQIKQAVTGY 122 Query: 115 GSAEKSQVQHMVRTLLKLPANPQA 138 G+A+K VQ V L L P+ Sbjct: 123 GNADKYDVQQAVARELNLEEIPKP 146 >UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=84 Tax=Alphaproteobacteria RepID=RUVC_METRJ Length = 207 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+G+I G +L+Y G + + + L RL+ ++ G+ I+ + Sbjct: 5 VRILGIDPGLRRTGWGLITAQGTKLTYGDCGVVTSDGELPLALRLRELFEGIGRIVEAVR 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+ F+ K+A + LKLG AR +A++ LPVFEYA +K+TV G G AEK Sbjct: 65 PDEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGHAEKV 124 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHC-HVSQNAMQMSESRLNLAR 169 Q+Q MVR LL ADAADALAIAITH H +A++ + R Sbjct: 125 QIQAMVRFLLPKAEFRVADAADALAIAITHASHRDAHALRQAHLPGGKRR 174 >UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=46 Tax=Actinomycetales RepID=RUVC_MYCVP Length = 194 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 ++G+DPG G VI GRQ+ L +RT L RL I V + + Sbjct: 2 RVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE+VF +NA++A+ QA GV +AA +++ V + +VK V G G A+K+ Sbjct: 62 PDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADKA 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 QV MV +L L P DAADALA+AI HC + + Sbjct: 122 QVTEMVTRILALQQKPTPADAADALALAICHCWRAPMLGR 161 >UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Desulfovibrionales RepID=C6C066_DESAD Length = 168 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 8 DPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAI 66 DPG+RVTGYG++R++ Q+S + +G IRT + SRL IY+ + E+I ++ PD AI Sbjct: 12 DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71 Query: 67 EQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMV 126 E F+A N SALKLGQARG A+ A L V Y +VK +VG G A+KSQV MV Sbjct: 72 ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131 Query: 127 RTLLKLPANPQA-DAADALAIAITHCHVSQ 155 +L + A D DAL IAI H + + Sbjct: 132 ERILGVKNTKWANDTTDALGIAICHLNERR 161 >UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY60_HALNC Length = 188 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ++GIDPGS G V+ + + + K +RL IYA V +I P Sbjct: 5 RVMGIDPGSVTMGVAVLDFERGSATQIHLQSVSLKPHGSFTARLGAIYAEVDRLIDTHAP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FAIEQ+FM ++ +S+LKL QARGVAI AAV L V EY VKQ VVG G A+K Q Sbjct: 65 DEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGRADKLQ 124 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQHM++ LL L +P AD ADA A+A+ HC+ + +S + + + Sbjct: 125 VQHMIKRLLSLSESPPADGADAAAVALCHCYRRTSLAGISADEVGVEK 172 >UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Neorickettsia RepID=RUVC_NEOSM Length = 166 Score = 172 bits (437), Expect = 5e-42, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%) Query: 1 MAII-LGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIIT 57 M+ + LG+DPG TG+ V+ G + Y+ SG ++T L +RL+ I+ G++++I Sbjct: 1 MSYVALGVDPGLLRTGWAVVEYDGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIE 60 Query: 58 QFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 + P +E+VF+ N S+L L RG I+ + L + E+A +K+ + G G A Sbjct: 61 KVNPSVAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRA 120 Query: 118 EKSQVQHMVRTLLKLPA--NPQADAADALAIA 147 K+QV++MV LL L + +D DALA+A Sbjct: 121 TKAQVKYMVEQLLGLDPCLSKYSDLYDALALA 152 >UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Cyanobacteria RepID=RUVC_ANASP Length = 163 Score = 171 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 3 IILGIDPGSRVTGYGVIRQV-------GRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTE 54 ILG+DPG + G+G I +++ L G I+T D ++ RL ++ + Sbjct: 4 RILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLFDDLHT 63 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 +I Q QPD AIE++F + S + + QARGV ++A LP E+ Q+K + G Sbjct: 64 VIDQLQPDVVAIEKLFFYRM-SSTIVVAQARGVVMLALAQHHLPYVEFTPAQIKLALTGY 122 Query: 115 GSAEKSQVQHMVRTLLKLPANPQA 138 G+A+KS+VQ V L L P+ Sbjct: 123 GNADKSEVQEAVARELDLAEIPRP 146 >UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Cyanobacteria RepID=RUVC_SYNJB Length = 168 Score = 171 bits (434), Expect = 9e-42, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 ILG+DPG G+G I L + G I T +P RL+ ++ +++++ Q +P Sbjct: 14 RILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRP 73 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E++F K ++ + + QARGV ++ L E+ QVKQ++ G G A+K Sbjct: 74 HQVGLEKLFFYKMGNT-IAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQA 132 Query: 122 VQHMVRTLLKLPANPQA 138 VQ V L LP+ P+ Sbjct: 133 VQAAVARELNLPSLPRP 149 >UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Myxococcus xanthus DK 1622 RepID=RUVC_MYXXD Length = 191 Score = 170 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 5/172 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPGSR G+GV+ + +L ++G G I+ L RL+ ++ +T + +++P Sbjct: 2 RVLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE-KS 120 A+E VF +NA SAL LG ARGVA++AA LPVFEYA +VK+ V G G A+ K Sbjct: 62 AAVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAV-GAGGADGKD 120 Query: 121 QVQHMVRTLLKLPA--NPQADAADALAIAITHCHVSQNAMQMSESRLNLARG 170 V MVRT L+L A +ADA+DALA+A+ H + + A+ + + +G Sbjct: 121 AVARMVRTFLELDASVLERADASDALAVALCHLNHGRAAVPAASASGKKRKG 172 >UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTA0_9PLAN Length = 147 Score = 169 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 3/146 (2%) Query: 19 IRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA-KNAD 76 I R++ + +G +R K LP+R++ IY GV ++IT QP AIEQ++ + Sbjct: 2 IEVQNRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERPK 61 Query: 77 SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANP 136 +A+ +G ARGV +AA +P+ Y+A Q+K+ + G G A K+QVQ V+ L LP P Sbjct: 62 TAIIMGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPEIP 121 Query: 137 Q-ADAADALAIAITHCHVSQNAMQMS 161 + D ADALA+A+ H +++ Q++ Sbjct: 122 EPPDVADALAVALCHYYLASMPTQVA 147 >UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Nostocaceae RepID=UPI0001C17184 Length = 192 Score = 169 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSY-------LGSGCIRTKVD-DLPSRLKLIYAGVTEI 55 ILG+DPG + G+G I R + G IRT D ++ RL ++ + + Sbjct: 31 ILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLFDDLHTL 90 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 + + QPD AIE++F + A++ L + QARGV ++ + LP E+A Q+KQ + G Sbjct: 91 LDELQPDVVAIERLFFYRMANTIL-VAQARGVIMLVLGQRRLPYLEFAPPQIKQALTSYG 149 Query: 116 SAEKSQVQHMVRTLLKLPANPQA 138 AEK +VQ V L L PQ Sbjct: 150 KAEKIEVQEAVMRELDLEEIPQP 172 >UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KB70_THENN Length = 170 Score = 169 bits (428), Expect = 5e-41, Method: Composition-based stats. Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 3/138 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS--RLKLIYAGVTEIITQFQ 60 ILG+DPG + G G+I G ++S++ G I T DLP RLK I+ I+ +F Sbjct: 7 RILGVDPGYGIVGIGIIEISGNRISHVFHGAIETS-KDLPRGKRLKQIHEEFLRILEKFS 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E +F KN +A+ +G+ARGV ++A + +PVFEYA +VK ++ G G A K Sbjct: 66 PDECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKR 125 Query: 121 QVQHMVRTLLKLPANPQA 138 QVQ V+ L L P+ Sbjct: 126 QVQENVKRFLGLSEIPRP 143 >UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZJ0_ACIFD Length = 164 Score = 168 bits (427), Expect = 5e-41, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQP 61 ILG+DPG GY VI G L +G+G + T SRL I G ++ F P Sbjct: 7 RILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESVLDDFDP 66 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE++ +N SAL + + GV +A + + ++ + VK GSA K Q Sbjct: 67 TEAAIERLAFTRNVSSALPVSEVVGVVRLALWRRGVVAYDISPNTVKNAATSGGSAAKEQ 126 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAIT 149 VQ V LL L PQ D ADA+AIA T Sbjct: 127 VQRTVVRLLGLDEPPQPPDVADAMAIAYT 155 >UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaeromyxobacter RepID=RUVC_ANADF Length = 206 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 2/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LGIDPGSR GYGV+ + G +L + SG + + + + RL I G+ E+I + P Sbjct: 2 IALGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +IEQVF + SAL LGQARGVA+ AA LPVFEYA +VK G G A K Q Sbjct: 62 AECSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKDQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESR 164 + LL +D ADALA+A+ H + + R Sbjct: 122 MIRTAHMLLG-ATPGLSDEADALALAVCHLARRAGRLAVPAVR 163 >UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Thermaceae RepID=RUVC_THET2 Length = 166 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 5/160 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGR---QLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQ 58 ++ GIDPG G GV+ G+ + L ++T + R+ I+A V E++ + Sbjct: 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHR 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 F+P+ A+E+ F + + A K+G A G +VAA +PV+ Y QVKQ + G G A Sbjct: 62 FRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAA 121 Query: 119 KSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNA 157 K +V MVR +L L P+ ADALAIA+TH ++ Sbjct: 122 KEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMG 161 >UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RUVC_ACIC5 Length = 171 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 75/171 (43%), Positives = 96/171 (56%), Gaps = 10/171 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-------LSYLGSGCIRTKVD-DLPSRLKLIYAGVTE 54 I GID GS +TGYG++ L + G IR L RL ++ + Sbjct: 2 RIFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVHRELLT 61 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 + QPD A+E+VF + NA SALKLG RGVA++AA LP+ EYA +K TV G Sbjct: 62 QLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVTGY 121 Query: 115 GSAEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 G A+K QVQ MV LL +P P+ DAADALAIAI H H +Q +Q +SR Sbjct: 122 GLAQKEQVQFMVARLLHMPEPPEPADAADALAIAICHIHHAQT-IQAQQSR 171 >UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=23 Tax=Actinobacteridae RepID=RUVC_CLAMS Length = 204 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG G GV+ R + +RT +L RL + G+ E++ + + Sbjct: 2 RILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVDRHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF N + + + Q GVA+V A + L V + +VK V G G A+K Sbjct: 62 PSVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADKR 121 Query: 121 QVQHMVRTLLKLPANPQA 138 QV MV +L L P Sbjct: 122 QVATMVARILGLDELPTP 139 >UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=bacterium Ellin514 RepID=B9XLI6_9BACT Length = 193 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR-LKLIYAGVTEIITQFQPD 62 ILG+DP R TG+G+IR L G I SR L I + ++I Q QP Sbjct: 31 ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F A+N +AL +G+ARG A+ L +FE A R+VKQ +VG G+A+K V Sbjct: 91 VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150 Query: 123 QHMVRTLLKLPANPQA 138 MV+ +L L P+ Sbjct: 151 AKMVQRMLHLSELPEP 166 >UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMQ2_9BACT Length = 151 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 14 TGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA 72 G+GV+ ++G + GC+ T D +P RL +Y G+ E I P + A+E+++ Sbjct: 1 MGFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFG 60 Query: 73 KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 132 +N +A + QARGVA++ +L V E + K TV G G AEKSQ+Q MV+ +L L Sbjct: 61 RNTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVILSL 120 Query: 133 PANPQA 138 P+ Sbjct: 121 KEIPRP 126 >UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJX2_9ACTN Length = 201 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ++GIDPG G GV+ R+ + + G +RT + L RL+ I G+ +I ++ Sbjct: 4 RVIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAEYA 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF N + + QA GVA+ A + + V + +VK + G G AEK Sbjct: 64 PHQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAEKK 123 Query: 121 QVQHMVRTLLKLPA 134 QV MV +L L Sbjct: 124 QVGAMVARVLGLAE 137 >UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax=Sulfurihydrogenibium RepID=B2V8P7_SULSY Length = 154 Score = 162 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IL IDP S TGY + + + L G I K + P LK +Y + E I ++ Sbjct: 1 MERILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEKQP--LKKLYQALEEKILKYT 58 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 + +E F + NA + +KLG+ RGV ++ A N + V E++ +VK ++ G G + K Sbjct: 59 IEKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKE 118 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 +V MV + L D ADA AI HC++ Sbjct: 119 EVLEMVNKIFNLN-IKDYDIADAF--AILHCYMLN 150 >UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=22 Tax=Actinomycetales RepID=RUVC_SACEN Length = 199 Score = 162 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ GR ++ +G G RT D +L +RL + V E + + Sbjct: 2 RVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE+VF N + + Q G+ +AA + LPV + +VK + G G A+K Sbjct: 62 PEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADKR 121 Query: 121 QVQHMVRTLLKLPA 134 QV MV +L L Sbjct: 122 QVTTMVTKILGLAE 135 >UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBU8_9BACT Length = 169 Score = 162 bits (412), Expect = 4e-39, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQ 60 +ILGIDP R TGYGVIR L L G I + L+ + G+ E++ F Sbjct: 2 VILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANSPKLPHSECLRRLAGGIRELVQAFH 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PDY +IE+ FM +NA +A+ LG ARG + A V +P + Y+ + K+ VG G A K Sbjct: 62 PDYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATKE 121 Query: 121 QVQHMVRTLLKLP-ANPQADAADALAIAITHCHVSQNA 157 Q+ ++ L + D+ DALA+AI H ++ Sbjct: 122 QIAILLAAELGIEIERIPLDSTDALALAICHAQLAMRP 159 >UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZE7_HALO1 Length = 168 Score = 162 bits (410), Expect = 5e-39, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVG---RQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQ 58 ILG+DPGSR+ GYGVI +Y+ G + T+ + RL I +T+++T+ Sbjct: 2 RILGVDPGSRMCGYGVIEVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVTE 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +P A+E VF +N SAL L QARG + A LPV+ YA VK+TV G G A Sbjct: 62 LRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRAP 121 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 K QV MV+ L+ L P+ADAADALA+AITH SE Sbjct: 122 KEQVALMVQALVGLRRVPEADAADALAVAITHAQRGPTIALGSE 165 >UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI47_KYTSD Length = 208 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 3 IILGIDPGSRVTGYGVIRQV-GRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ G L + RT D LP RL + + + I + Sbjct: 2 RVLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETYD 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E++F + + + QA GVA+VAA + V ++ +VK V G G A K Sbjct: 62 PDAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGKE 121 Query: 121 QVQHMVRTLLKLP 133 QV MV +L L Sbjct: 122 QVTSMVVRILSLS 134 >UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Actinobacteridae RepID=C7MCB8_BRAFD Length = 197 Score = 161 bits (408), Expect = 9e-39, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ GR+ + +G +R++ D L RL I G+ + +F Sbjct: 5 RVLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEEFG 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+VF N + + Q G+A++ A + +P + +VK V G G A+K Sbjct: 65 PDAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRADKK 124 Query: 121 QVQHMVRTLLKL 132 Q+Q M+ LL L Sbjct: 125 QIQTMLVKLLGL 136 >UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subunit n=2 Tax=Rothia mucilaginosa RepID=D2NT02_9MICC Length = 228 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQF 59 I+G+DPG G+ ++ R+ ++ G T L R+ I+ + + + Sbjct: 27 TRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDTY 86 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +PD AIE++F + ++ + A G I AA + +PVF + +VK V G G A+K Sbjct: 87 RPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRADK 146 Query: 120 SQVQHMVRTLLKLPANPQA 138 + V MV +L L A P+ Sbjct: 147 ASVGRMVTRILGLNAMPKP 165 >UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Verrucomicrobia RepID=RUVC_AKKM8 Length = 167 Score = 159 bits (404), Expect = 3e-38, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR-LKLIYAGVTEIITQFQP 61 IL IDP R TGY V+ R+ L G + S L I + +I ++ P Sbjct: 2 RILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E++ ++ +A+ +G A+ ++AA L + EY+ + VK +VVG G+A+K+Q Sbjct: 62 DEMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKTQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITH 150 V MVR LL+L P++DAADALAI +TH Sbjct: 122 VAFMVRALLELRETPESDAADALAIGLTH 150 >UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=32 Tax=Actinomycetales RepID=RUVC_STRGG Length = 204 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG G GV+ V + L+ +G G +RT D +L RL + G+ + + + Sbjct: 2 RVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEHS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P Y A+E+VF N + + QA VA++ A + +PV + +VK V G G A+K+ Sbjct: 62 PGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADKA 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHV--SQNAMQMSESRLNLAR 169 QV MV LL+L A P+ DAADALA+AI H +QN +Q + + + Sbjct: 122 QVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPAQNRLQQAVAAHRTSG 173 >UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Deinococcus RepID=RUVC_DEIGD Length = 168 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 1/134 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQP 61 I+LG+DPG G G++ R+ +L C+ T+ L P RL+ ++ V ++ +++P Sbjct: 2 IVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRRLQYLHEEVARLLAEYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE + + AD A K+GQA GV +A +P+ Y QVK+++VG G A+K Q Sbjct: 62 DAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGTGRADKEQ 121 Query: 122 VQHMVRTLLKLPAN 135 + +MV+ L + Sbjct: 122 IIYMVKATLGIREL 135 >UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax=Desulfobacteraceae RepID=B8FBT6_DESAA Length = 168 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG TG ++ Q+ G I T + L RL IY + E+ +PD Sbjct: 3 VLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAERPD 62 Query: 63 YFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E +F + K S + LG+ G +VA + +PV E A R+VK+ + G G+A+K+Q Sbjct: 63 LMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADKNQ 122 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLN 166 ++ VR L + A+DA+A+A+ + + ++ R++ Sbjct: 123 LERAVRQRLGREEAIRPSHASDAMALALIGLYRGDHYLRNGLDRIS 168 >UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES0_9DELT Length = 190 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 11/165 (6%) Query: 2 AIILGIDPGSRVTGYGVIRQVGR----------QLSYLGSGCIRTKV-DDLPSRLKLIYA 50 ILGIDPG+RV GY ++ R + Y+ G +R + D++ RL I + Sbjct: 4 TRILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLVEIAS 63 Query: 51 GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQT 110 G+ E++ +FQP AIE+ F NA SAL L +ARG + A+ L V EYA +K+ Sbjct: 64 GLRELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAMIKRA 123 Query: 111 VVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 V G G A K++VQ V+ L +L PQADAADALA AI H + Sbjct: 124 VTGRGRATKAEVQARVQLLCRLAKEPQADAADALATAICHVQARR 168 >UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RUVC_HYPNA Length = 167 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+GVI Q G +L ++ G I D + RL I+ V E+ Sbjct: 5 IRILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELARHHA 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E+ + N SALKLGQARG A+ A + V E+A RQ+K +VVG G+A+K Sbjct: 65 PHAAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGTADKD 124 Query: 121 QVQHMVRTLLK 131 QV+ MV+ LL Sbjct: 125 QVKFMVQRLLP 135 >UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax=Tropheryma whipplei RepID=Q83GK1_TROWT Length = 183 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 6/170 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+ +DPG G V+ G L L T +R+ I + ++ +F Sbjct: 2 RIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEEFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FA+E+VF N + + GVA + + ++K ++ G G+A+K Sbjct: 62 PDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGNAKKD 121 Query: 121 QVQHMV-RTLLKLPANPQADAADALAIAITHC--HVSQNAMQMSESRLNL 167 Q++ MV R L + DA+DALA+A+ + N +E+RL Sbjct: 122 QIRSMVNRVFLSQDIPLRHDASDALALAVCCARRYALHNE-HFTEARLRW 170 >UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Leptospira RepID=Q04V33_LEPBJ Length = 166 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+GIDPGS GY V+ + ++ L G + P+ L ++ G+TEI+ +F+P Sbjct: 2 RIIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q Sbjct: 62 SIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKKQ 121 Query: 122 V-QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 + Q + L D+ DA+A A + MS S L AR ++ Sbjct: 122 IRQALKLLLDIDLLKGHDDSWDAVAAAYV-------GLSMSSSPLFAARFKV 166 >UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax=Actinomycetaceae RepID=C2KQ22_9ACTO Length = 209 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQL-SYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG G GV+ ++ S + IR++ + RL I G+ IT+F Sbjct: 2 RVLGIDPGITRCGVGVVDIDVSRVASLVYVAVIRSEPNLATQFRLLKISEGIAATITRFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ A+E+ F +N S QA GVA+ A LPV + +VK V G G+A K+ Sbjct: 62 PEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGAATKA 121 Query: 121 QVQHMVRTLLKLPANPQA 138 QV+ M+ +L+L P+ Sbjct: 122 QVEAMIARILRLDKPPKP 139 >UniRef50_Q8F836 Holliday junction resolvasome endonuclease subunit n=2 Tax=Leptospira interrogans RepID=Q8F836_LEPIN Length = 176 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 2/148 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+GIDPGS GY V+ + ++ L G + P L ++ G+ EI+ +F P Sbjct: 14 RIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFNP 73 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q Sbjct: 74 SIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKKQ 133 Query: 122 V-QHMVRTLLKLPANPQADAADALAIAI 148 + Q + L D+ DA+A A Sbjct: 134 IHQALKLLLNVELLKGHDDSWDAIAAAY 161 >UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y8_COPPD Length = 159 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 3/160 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ++ G+DPGS G ++ R ++L C+ R I V + F P+ Sbjct: 2 VVFGVDPGSTRVGLALLDDESR--NWLHVQCLELTGLPEHLRYTTIERYVGALCDVFNPE 59 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++ KN ++ L++ + RGV + A + + VFEY +VK G G EK+ + Sbjct: 60 EMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEKAGI 119 Query: 123 QHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMS 161 ++ P DA+DA+AIA H + N S Sbjct: 120 VRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNNRAVES 159 >UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Cyanobacteria RepID=RUVC_SYNY3 Length = 167 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 5 LGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LGIDPG + G+ ++ + G I T + P RL I + ++ +F P Sbjct: 11 LGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFSPQ 70 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQEL--PVFEYAARQVKQTVVGIGSAEKS 120 A+E F ++ +A + QA GV + ++ PVF + + + +G G A K+ Sbjct: 71 AIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSW--KCHLGNGKANKA 128 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 +V MV+ L P D+ DA+AIA+ + +N Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIALAGLNGVRN 164 >UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVS7_9CORY Length = 175 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 41 LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 + RLK +Y +T+ I +++PD A+E++F + L A GV I+AA L V Sbjct: 1 MGDRLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVH 60 Query: 101 EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 EY QVK+ + G G A+K Q+ MV +L L P+ DAADALAIAITHC + ++ Sbjct: 61 EYTPSQVKKAITGNGRADKKQMTAMVTRILGLENPPKPADAADALAIAITHCWRAPQILR 120 Query: 160 MSESRLNLAR 169 +++ L + Sbjct: 121 EEKAKEQLRK 130 >UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Actinomycetales RepID=RUVC_FRASC Length = 172 Score = 145 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ + + G +RT ++ RL + G+ + + + Sbjct: 2 RVLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRTR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ A+E+VF N + + QA VAIV A + LPV Y +VK V G G A+K+ Sbjct: 62 PEAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADKA 121 Query: 121 QVQHMVRTLLKLPA 134 QV M+ LL L Sbjct: 122 QVSFMITRLLGLTE 135 >UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Actinomycetales RepID=RUVC_ACIC1 Length = 178 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ++G+DPG G GV+ +G + T D +L RL + G+ + + + P Sbjct: 13 RVMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWLDRAAP 72 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+VF N + + QA VA++ A + +PV + +VK V G G A K Q Sbjct: 73 DVVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGRAGKDQ 132 Query: 122 VQHMVRTLLKLPANPQA 138 V MVR LL+ P Sbjct: 133 VAFMVRRLLRAPGLAAP 149 >UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bifidobacteriaceae RepID=RUVC_BIFLD Length = 194 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 IILG+DPG G GVI R+LS++ +R+ D RL IY G++E + +F Sbjct: 2 IILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +IE+VF N ++ L QA G+A++AA + +PV + + K + G G A+K Sbjct: 62 PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQKI 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSE 162 QV+ MV +L L P DAADALA+AI H A+Q E Sbjct: 122 QVERMVTRILNLTKMPTPADAADALALAICHALRPAGALQGGE 164 >UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK96_9BACT Length = 151 Score = 143 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 22 VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALK 80 ++ + G ++ K LK ++ +T++I ++PD+ +IE F +K A +A+ Sbjct: 5 ENGSMNAIDCGVVKNKAKLSQLDCLKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMI 64 Query: 81 LGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLP-ANPQAD 139 LG ARG + A +LPV+EY+ ++ KQ + G G A K QV M+ +L+ + D Sbjct: 65 LGMARGSVLSALAGTDLPVWEYSPKRAKQAITGSGDASKEQVAFMIAGILQADVSQINDD 124 Query: 140 AADALAIAITH 150 A DALA+A+ H Sbjct: 125 ATDALALAVCH 135 >UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKP6_DESAH Length = 164 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQF 59 M ++G+DPG TG GVI G ++ G I T DD SRL I+ V + + Q Sbjct: 4 MVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFLCQE 63 Query: 60 QPDYFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +PD IE VF + K S + LG+ GV +VAA V E + R+ K+ V G GSA+ Sbjct: 64 KPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSGSAD 123 Query: 119 KSQVQHMVRTLLKLPANPQA 138 K+QV+ VR +L P + Sbjct: 124 KNQVEKSVRNILNHPHPIRP 143 >UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax=Verrucomicrobia RepID=B1ZSD5_OPITP Length = 200 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 71/151 (47%), Gaps = 2/151 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDP R TG +I GR L +R + L I+ V + + Sbjct: 45 RVLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTE 104 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 + A+EQ +N +A LG ARG A+ A Q PVFEYA +VKQ VVG G A K Sbjct: 105 VRHVALEQTIFVQNFQTAQILGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASKE 164 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHC 151 Q+ V LL +D ADA +A+ H Sbjct: 165 QMARTVMALLGHGRPLASDEADAAGVALCHA 195 >UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subunit-like protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTU4_9BACL Length = 210 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 ILGID G+R G+ V+ G + +LG G I T D L + + ++ V +I ++P Sbjct: 2 RILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYEP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+ ++ L + A +AAV + +P+ + +++K G G AEK Sbjct: 62 TIVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKDD 121 Query: 122 VQHMVRTLLKLP 133 V + L Sbjct: 122 VARALCEHYGLE 133 >UniRef50_B6ALY9 Probable crossover junction endodeoxyribonuclease (RuvC) n=3 Tax=Leptospirillum RepID=B6ALY9_9BACT Length = 158 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 5 LGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LG+DPG TG+ V+ +L L G +RT + R+ L++ + +++++ Sbjct: 2 LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTDSTLPVSRRIGLLFDRLDALLSEYPVK 61 Query: 63 YFAIEQVFMAK-NADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E F + + + L LG G+ + A +P+ + R++K + G G+A K Sbjct: 62 GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASKEA 121 Query: 122 VQHMVRTLLKLP-ANPQADAADALAIA 147 VQ+ + L DA+ +A Sbjct: 122 VQNALSVWLGAGLRIGSTHEGDAMGLA 148 >UniRef50_A9VVH9 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VVH9_BACWK Length = 166 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPDY 63 LG+D G +I V +L + I+T RL I + I+ ++QP Sbjct: 7 LGLDMSLASAGIAIIDIVDGELRIVHKQRIKTNPKQRHGERLHKIATELKSILIEYQPFD 66 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 I + ++ A + L + GV+ + ++ + E + +K + G G A+K +V+ Sbjct: 67 TIIREQGFSRFAKTTQALFKVVGVSDLVL--RDYAIVEISPTTIKLVMTGDGKADKKEVE 124 Query: 124 HMVRTLLKLPAN---PQADAADALAIAITH 150 VR +++L + D +DA AI +TH Sbjct: 125 KAVRKIMRLDDDYIFISDDESDACAIILTH 154 >UniRef50_C3CV70 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV70_BACTU Length = 163 Score = 92.4 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 15/150 (10%) Query: 14 TGYGVIR--QVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQPDYFAIEQVF 70 GY I Q L +G ++TK +L RL IY + ++ D A E++F Sbjct: 1 MGYAFIEYDIDTNQYMKLDTGTLKTKSSELLEDRLLTIYEMIKTYNLKYNTDIIACEKLF 60 Query: 71 MA-------KNAD-SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +N S + GV + A L + ++ VK+ V G G A K + Sbjct: 61 YNPKQKNDNRNKSASIMTTNMVTGVVFLVAGELGLWIKDFVPGTVKKHVAGYGRATKEDL 120 Query: 123 QHMVRTLL---KLPANPQADAADALAIAIT 149 Q + + A DA+ IA+T Sbjct: 121 QKAIEDFCEQHGIKAKTN-HETDAIGIALT 149 >UniRef50_UPI00016C63C7 crossover junction endodeoxyribonuclease ruvC n=1 Tax=Clostridium difficile QCD-63q42 RepID=UPI00016C63C7 Length = 164 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 16/158 (10%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL---PSRLKLIYAGVTEIITQF 59 ++L +D TG+ VI R L G I TK D R+ I + EIIT Sbjct: 1 MVLALDISMSSTGWAVI---NRNKKVLKYGKIVTKKDKFKSEDERMCYICNTIQEIITTH 57 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYA-ARQVKQTVVGIGSAE 118 +E F ++N+ + L L + G + + + EY +++ ++ G A+ Sbjct: 58 NIQIVLVEDQFTSRNSKTILSLRKLLGAIMRTVKLNNIEI-EYMYPVSIRKYLMNNGKAK 116 Query: 119 KSQVQHMVR-TLLKLPA-------NPQADAADALAIAI 148 K +V VR ++ + +D DA+A+ I Sbjct: 117 KEEVAAYVRENIIDIGEYIDRTCKAKTSDIYDAIALGI 154 >UniRef50_C0ZXA4 Putative uncharacterized protein n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZXA4_RHOE4 Length = 185 Score = 84.7 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 19/165 (11%) Query: 1 MAIILGIDPGSRVTGYGVIRQVG-----RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEI 55 M ++G+DP G ++ G + G ++ L R I I Sbjct: 1 MTTVVGLDPSLTAAGIAILGSPGTTDTPNVPKLVTVGVSGSESATLAERSTRIGDQFERI 60 Query: 56 ITQF--QPDYFAIEQVFMAKNADSALKLG---QARGV----AIVAAVNQELPVFEYAARQ 106 I IEQ+ +A K Q R +++PV E A Sbjct: 61 IRSMPSSVRLVVIEQL-----PFTAPKFAAKYQERCALYYRVTEFLARRKIPVVEVGATT 115 Query: 107 VKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHC 151 +K+ G G A+K +V + +R L + ADALA+A Sbjct: 116 LKKYATGDGRADKREVVNAMRDLWPHAKVRNDNEADALALATIGA 160 >UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclease subunit, RuvC n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54CFC Length = 76 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPG TG+ VI + G ++ YLGSG T D+ SRL I + II F+ Sbjct: 3 VIGIDPGLIHTGWAVIEEDGPKIKYLGSGTCNTSNKSDMASRLVSILEQLRLIILNFKIK 62 Query: 63 YFAIEQVFMAKNA 75 AIE+ F+ + Sbjct: 63 SGAIEKAFVKNDP 75 >UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanothece RepID=A3IVL4_9CHRO Length = 130 Score = 82.7 bits (204), Expect = 5e-15, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 28 YLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARG 86 + G + T D LP RL I A + EI+ ++Q AIEQ F+ S KL Q G Sbjct: 1 MVDFGLVETDSHDPLPYRLGEIEADLREILQEYQVTNIAIEQPFIQPEFPSMTKLLQVLG 60 Query: 87 VAIVAAVNQE-LPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALA 145 V + A LP Y A ++ + AE+ + +V L L + DA+A Sbjct: 61 VINLVAYRHGCLPTMIYPATW--KSNLDHPKAEREDLTAIVEELFDLQSILLNQEVDAIA 118 Query: 146 IAIT 149 +A T Sbjct: 119 VAYT 122 >UniRef50_A7KUW6 RuvC n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KUW6_9CAUD Length = 177 Score = 70.8 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 30/173 (17%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK----VDDLPSRLKLIYAGVTEIITQ 58 I+GID TGY + + IRT R++ + A ++ I+ Sbjct: 2 RIMGIDASLSTTGYAIYDTEIGDFILIDK--IRTSIKKATPTRSKRIQYLCAELSHIMFW 59 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVA---IVAAVNQELPVFEYAARQVKQTVVGIG 115 D E +++A+ +AL LG RG + + L + E + ++K+ V G G Sbjct: 60 NYVDVVVTEDIYVAQ-KSAALPLGMVRGAIEQLVYDLEFEGLHIIE--STKMKKAVTGNG 116 Query: 116 SAEK-------SQVQH---MVRTLLKLP------ANPQADAADALAIAITHCH 152 +A K ++ +V L A D ADA + + H + Sbjct: 117 NANKLLTYETLKEIYKDSPLVMEALGKELISDNSAKKNEDMADA--VGLVHAY 167 >UniRef50_A9U6S4 Predicted protein n=2 Tax=cellular organisms RepID=A9U6S4_PHYPA Length = 225 Score = 65.8 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 29/165 (17%) Query: 3 IILGID----PGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIIT 57 +LG+D PG+ I R + + + T D R + + +++ I Sbjct: 55 RVLGLDLSSSPGAAA-----IEVRNRTPYLIAASSVATTNDDTDAVRNVAVESFISQFIY 109 Query: 58 QFQP-DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY---------AARQV 107 + +P D E +N + + + AA ++ L F Y + V Sbjct: 110 ENRPFDIVVREDFTTGRNKRATQLVFGS-----WAAADRALLAFGYRAEDLDPPLSPTYV 164 Query: 108 KQTVVGIGSAEKSQVQHMVRTLLKLPAN----PQADAADALAIAI 148 K+ V G G AEKS+V VR L+LP + D +DA A+ + Sbjct: 165 KKAVTGDGKAEKSEVAKAVRKWLRLPDDYPFRAGYDDSDACAVVL 209 >UniRef50_B4B914 Holliday junction resolvasome endonuclease subunit-like protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B914_9CHRO Length = 170 Score = 64.6 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 11/156 (7%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 I+G+DPG ++ + CI + +L ++ I T+ + F + Sbjct: 6 IIGVDPGLNYLAVSLLDSNK---KLMDFNCIEQEQEKNLENKYNNINRKFTKWFSNFNKE 62 Query: 63 --YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK- 119 +E ++ K+ +A + I AA +L + + A VK + G K Sbjct: 63 KTIIILEFPVFMIKTENTKKVDKATEIIINAANKFDLKIHKIAPNHVKFLITGNSRISKV 122 Query: 120 ---SQVQHMVRTLLK-LPANPQADAADALAIAITHC 151 QV+ MV + L A D++AI +T Sbjct: 123 GLFEQVKGMVSNIPSTLSAYTNNHITDSIAIGLTGI 158 >UniRef50_B8FNH8 Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FNH8_DESAA Length = 189 Score = 64.6 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 18/148 (12%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV---------DDLPSRLKLIYAGVT 53 +IL +D G TGY V Q G T DD R + + Sbjct: 1 MILALDVGLSNTGYCVFENGKPQ----EWGVCTTSPVKKKTVRVADDRADRSASLARQIR 56 Query: 54 EIITQFQPDYFAIEQVFMAKNADSALKLG---QARGVAIVAAVNQELPVFEYAARQVKQT 110 ++ + E + A SA +G QA G+ A +P VK+ Sbjct: 57 AVVEKHGVTGIVGELP--SGGAQSAKAMGDMTQAVGIVAATAALLGIPAEWCTPTDVKKA 114 Query: 111 VVGIGSAEKSQVQHMVRTLLKLPANPQA 138 G SA K ++ + L + Sbjct: 115 ATGKASASKEEIADAMAKKYGLEKVVKH 142 >UniRef50_C3RQB8 Predicted protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RQB8_9MOLU Length = 172 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFE 101 +++ I + + I ++ P F E +F+ K S+ L + G+ I +N P+ Sbjct: 46 EKMRYISTYINDFIKKYPPKSFTAEGIFIKKEFLASSETLMKVHGMVIEKFINY--PIKY 103 Query: 102 YAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAIT 149 +K+ + G G+A K V+ + L + D ADALA+ +T Sbjct: 104 IPPANIKKNITGKGNASKELVRQNICKKLNIQGI-NYDEADALALMLT 150 >UniRef50_Q19Z77 Gp9 n=2 Tax=unclassified Siphoviridae RepID=Q19Z77_9CAUD Length = 230 Score = 62.7 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 19/170 (11%) Query: 1 MAIILGIDPGSRVTGYG--VI----------RQVGRQLSYLGSGCIRTKVDDL----PSR 44 M ILGID TG V+ R+ Q+ G + K D R Sbjct: 40 MPRILGIDTSLTGTGLARAVLPDVQRGVDMPREWPAQVDLATVGASKPKKGDTWLARSRR 99 Query: 45 LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 104 + + G+ + D +E++ D+ + L G + +++P++ Sbjct: 100 VHEVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWGEVVNLVRLRDIPLYLVNV 159 Query: 105 RQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAIT---HC 151 VK+ G G+A+K +V + + +DALA+ + HC Sbjct: 160 SGVKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAVCMMTARHC 209 >UniRef50_C3IV59 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bacillus thuringiensis IBL 4222 RepID=C3IV59_BACTU Length = 143 Score = 60.0 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 4/128 (3%) Query: 25 QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQ 83 + + +G I D ++ + + ++ E F N D+ KL + Sbjct: 4 KHDIIEAGKIDIPSKGDEGDKIIYQIERIEALFEKYDITKILCEDQFSKLNIDTLKKLTR 63 Query: 84 ARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLL---KLPANPQADA 140 G + A +L + ++ G G A+K H V L L D Sbjct: 64 VSGTILYLAKKHKLEIELIYPTSWRKIFHGSGKAKKEDTFHKVVALYEFENLEFKKDNDL 123 Query: 141 ADALAIAI 148 DA+ IA Sbjct: 124 TDAIGIAW 131 >UniRef50_B3VLT4 Gp5 n=9 Tax=unclassified Siphoviridae RepID=B3VLT4_9CAUD Length = 193 Score = 59.6 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 50/173 (28%), Gaps = 24/173 (13%) Query: 3 IILGIDPGSRVTGYGVIRQ----VGRQLSYLGSGCIRT----------KVDDLPSRLKLI 48 ILGID TG I + T D R + Sbjct: 2 RILGIDTSLTGTGLARIDLATWPPSNPPRQDDETVVFTADTATVSAPGPTKDKSKR--AM 59 Query: 49 YAGVTEIITQ--------FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 V +I Q +PD +E + SA L G I ++P+ Sbjct: 60 CRRVNALIDQIEWCFQDGEKPDAVGMEALAYGAKGASAWVLPWVFGRVIELCEKYDVPLT 119 Query: 101 EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 Q + G G+A+K V + L + ADAL + C Sbjct: 120 IVGTSQRAKFATGKGNADKETVLLAIAKALPQADPRNNNEADALTVGAVVCQS 172 >UniRef50_UPI0001693708 crossover junction endodeoxyribonuclease RuvC n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693708 Length = 55 Score = 58.9 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEI 55 ILGIDPG + G+G I +V +L + G I+T+ P RLK +Y E+ Sbjct: 2 RILGIDPGIAIVGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGEL 55 >UniRef50_A8V1X8 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V1X8_9AQUI Length = 179 Score = 58.9 bits (142), Expect = 7e-08, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIITQ 58 M+II IDPG TGY V G L G I+T D R+ I V ++I + Sbjct: 1 MSII-AIDPGIEKTGYAV----GANNKVLEIGTIKTSKKDGTDFDRVSKIKEAVRDLILK 55 Query: 59 FQPDYFAIEQVFMAKNA 75 Q IE+ + N Sbjct: 56 HQVSLMLIEEYHVYGNP 72 >UniRef50_A9GHB7 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GHB7_SORC5 Length = 182 Score = 58.1 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 I+LG DPG+ G+ + ++GSG + + P L+ + ++++++P Sbjct: 3 TIVLGFDPGAARVGWAALDVDAAGARHVGSGVLPVDLAGDPG-LEALRTAAGALLSRYRP 61 Query: 62 DYFAIEQV 69 A+E+V Sbjct: 62 ALVAVERV 69 >UniRef50_UPI0001743ACA hypothetical protein cdivTM_35644 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743ACA Length = 64 Score = 56.6 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 96 ELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 + + EY Q+K T+ G G A+K QVQ Sbjct: 2 GIKIAEYTPLQIKNTLTGYGKADKRQVQ 29 >UniRef50_D2LVB2 Putative uncharacterized protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LVB2_BACS4 Length = 170 Score = 56.2 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 44/179 (24%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF 59 M +L +D GY + Q + G I+ D R+ + + E++ + Sbjct: 1 MPRLLSLDQSITSCGYSIFEIHNNQSELIDYGTIKLNTKLDYFERIICLENILNEMVKDY 60 Query: 60 QPDYFAIEQV------------------------FMAKNADSALKLGQARGVAIVAAVNQ 95 +E + F +N + Q V V Sbjct: 61 NIKLAIVEDIQKHRGTGLTTYKKLSSLLFFLQYFFYYRNIE-----CQ---VVHVNTWRN 112 Query: 96 ELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVS 154 Y + V G+ K V + +L P++ +D++A+ + HCH + Sbjct: 113 G-----Y------RNVFGLPRINKDIVYEHIFNILGEPSDFDNHQSDSIAMGLFHCHHN 160 >UniRef50_D1JM27 Predicted protein n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JM27_9BACE Length = 166 Score = 54.6 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELP-VFEYAARQV 107 Y + E I ++ E V ++K+ +A KL + RG+ + LP V Sbjct: 59 YDTLVEFIQKYNIKLIIAEDVCVSKHFIAARKLSEFRGILYLICAQLGLPEPKFINVSTV 118 Query: 108 KQTVVGIGSAEKSQ-VQHMVRTLLKLPANPQAD-AADA 143 K+ G G A+K + +++ ++ P D ADA Sbjct: 119 KKWATGDGKADKKKMIEYCIKRW---NITPVDDNMADA 153 >UniRef50_Q8SD22 PHIKZ140 n=1 Tax=Pseudomonas phage phiKZ RepID=Q8SD22_9CAUD Length = 187 Score = 53.9 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 27/177 (15%) Query: 3 IILGIDPGSRVTGYGVIRQV-GRQLSYL-------------GSGCIRTKVDDLPSRLKLI 48 +L +DPGS+ G ++ + I +R++ + Sbjct: 12 RVLALDPGSQNLGIAILEDKLDGSNKVVRNAFTCHLKDTNPAYAAISEVHGSRFTRMQQM 71 Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQE--LPVFEYAARQ 106 V I+ +P +E ++ K A S L + A + +P++ Sbjct: 72 SDVVLNILHTEKPHAVIVESNYLGKFAQSFAVLVECVTYVHRALYEYDRFIPLYMIDPTT 131 Query: 107 VK-----QTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADA---LAIAITHCHVSQ 155 VK + V G K V+ +R+ + N D+ D A AI + ++++ Sbjct: 132 VKINAGMKKVKGT---TKDDVKEAMRSRTDITWNIDIDSLDDHSMDACAIAYYYLTR 185 >UniRef50_Q19YZ7 Gp8 n=3 Tax=unclassified Siphoviridae RepID=Q19YZ7_9CAUD Length = 216 Score = 53.9 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 53/175 (30%), Gaps = 31/175 (17%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGR-------------QLSYLGSGCIRTKVDD-----LP 42 M +L +DP TG + + R + L D + Sbjct: 25 MTRVLSVDPSLTSTGLCRVDLIPRPTSSEPRGDNEPVRAEILLHAVKSKPTADKSYLAMS 84 Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQAR----GVAIVAA-VNQEL 97 R++ I V + D IE +R G AA VN + Sbjct: 85 RRIEKIADTVRAAMDGC--DLIVIEGPSFGSKGQHT----HSRDWLWGKIFDAARVNWGI 138 Query: 98 PVFEYAARQVKQTVVGIGSAEKSQV-QHMVRTLLKLPANPQADAADALAIAITHC 151 PV Q + G G+A+K V ++ D ADAL +A C Sbjct: 139 PVLVVTPSQRMKYATGKGNAQKDAVLAAAIKRW-PDVEIDGNDQADALILAAIGC 192 >UniRef50_UPI0001692F19 crossover junction endodeoxyribonuclease RuvC n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692F19 Length = 76 Score = 53.9 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 91 AAVNQELPVFEY-AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPAN---PQADAADALAI 146 A V ++ + VK+ V G G AEK V VR LL LP + D +DA A+ Sbjct: 4 ALERFGQHVTDHLSPSTVKRIVAGNGKAEKEDVAEEVRKLLGLPLDHVFASDDESDACAV 63 Query: 147 AITH 150 + Sbjct: 64 VLAW 67 >UniRef50_B1ZCZ8 Putative uncharacterized protein n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZCZ8_METPB Length = 185 Score = 53.9 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GY G++ SG IR + + V II ++ Sbjct: 2 RVLGIDPGGAS-GYAY-GLPGQKPK---SGTIRLDSGFSNGRKFATLEGRVRNIIGVYEI 56 Query: 62 DYFAIEQVFMAKNAD----SALKLGQA-RGVAIVAAVNQEL---PVFEYAARQVKQTVVG 113 D IE ++ + ++LG + ++A + + + ++ +G Sbjct: 57 DAVFIEAPYIQTDPRKFDIQVVRLGYGYQAAILMACEKEGIGPERISLVEPNLWRKFAIG 116 Query: 114 IGSAEKS 120 G+A K Sbjct: 117 RGNAPKD 123 >UniRef50_C6ADE4 Phage related protein n=32 Tax=root RepID=C6ADE4_BARGA Length = 160 Score = 52.7 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 35/160 (21%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR---------------LKL 47 IIL +D G+ TG+ + G I + +D SR L Sbjct: 7 IILCLDLGT-KTGWAICGADGH---------ITSDTEDFQSRRFEGGGMRYLRFKRWLTE 56 Query: 48 IYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 107 + V EI D E+V D++ G + ++P + Sbjct: 57 LKRSVDEI------DAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTI 110 Query: 108 KQTVVGIGSAEKSQVQHMVRTLLKLPANPQAD-AADALAI 146 K+ G G+A K M++ + P+ D ADALAI Sbjct: 111 KKATTGKGNASKV---KMIKAICAKGHVPKDDNEADALAI 147 >UniRef50_UPI0001694EFC hypothetical protein Plarl_04065 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694EFC Length = 185 Score = 52.7 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 18/121 (14%) Query: 6 GIDPGSRVTGYGVIRQVG--RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP-D 62 GIDP S TG+ + Q+G + L G ++ I V EI+ QP D Sbjct: 5 GIDP-STKTGFVALDQLGKVSKAKELT-GINKSDS-------IRIITLVDEIMDHIQPGD 55 Query: 63 YFAIEQVFMAKNADSALKLGQARGV---AIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 IE A A + Q G+ A +++P E Q+K+ G G+A+K Sbjct: 56 RVFIEG--FAHAAKGNY-VSQMFGIGWGIRTALTRRKVPYTEVTPSQLKKFATGKGNAKK 112 Query: 120 S 120 Sbjct: 113 E 113 >UniRef50_B6JE97 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JE97_OLICO Length = 174 Score = 51.9 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 16/175 (9%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IIL +D + TG+ + G G I DD+ + A + + +P Sbjct: 6 IILSLDVAT-NTGW-CAGEPGNPNPDFGHFTIPPTGDDVGTYGLKYSAWLKGQLEGLKPA 63 Query: 63 YFAIEQVFMAKN--ADSALKLGQARGVAIV---AAVNQELPVFEYAARQVKQTVVGIGSA 117 E + K +A KL G+A++ AA ++ + V E A VK+ G G A Sbjct: 64 LVIFEAPILPKKTTPTTARKLM---GLAMLTEMAARHRGITVREGRASTVKKHFTGNGWA 120 Query: 118 EKSQVQHMVRTLLKLPANPQADAADALAI---AITHCHVSQNAMQMSESRLNLAR 169 +K+ + R A D ADA A+ A+ C+ ++A + + + + Sbjct: 121 KKADTMAIARRY--GWAVRTDDEADACALWAYAVC-CYAPEHATRFALGPIAARQ 172 >UniRef50_C3PY89 Predicted protein n=1 Tax=Bacteroides sp. 9_1_42FAA RepID=C3PY89_9BACE Length = 161 Score = 51.5 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 12/112 (10%) Query: 52 VTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY-AARQVKQT 110 + ++ ++ E V + ++ +L + RG+ + ++P E+ +K+ Sbjct: 57 LLSLLRRYGIRRVVAEDVSVNRHFYDMRRLSELRGILLEVCDELDIPEPEFVNPAVLKKW 116 Query: 111 VVGIGSAEKSQVQHMVRTLLKLPANPQAD-AADALAIAITH---CHVSQNAM 158 G G A K+Q+ + + P D AADA H ++ ++ + Sbjct: 117 ATGDGHATKTQMVAACKDRYGI--VPVDDNAADA-----CHLFYYYIRRHRL 161 >UniRef50_Q6VY77 Putative uncharacterized protein n=3 Tax=root RepID=Q6VY77_9CAUD Length = 258 Score = 51.5 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 10/123 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +LG+D TG V G + I+T+ D RL + + + +P Sbjct: 86 RVLGLDLSLTSTG--VCLPDGSTVR------IKTRQKDGDRRLVQVRDFIRAAVAGDRPH 137 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IE + K+A SA + G + ++ +P +K G+A+KS++ Sbjct: 138 VAVIEDL--PKHAMSAGLTARVHGPVVCELIDAGVPYAYVVPATLKSYACDHGAADKSRM 195 Query: 123 QHM 125 Sbjct: 196 SAA 198 >UniRef50_B4AHF0 Putative uncharacterized protein n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF0_BACPU Length = 186 Score = 49.2 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 19/167 (11%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF- 59 L D G +I + ++ R ++I + + Sbjct: 7 IRCLAFDTSMTCPGVAIIEVRKGKPIIKALSHVKPNTSRSHAHRAEVIEGWAMLFLDKHV 66 Query: 60 ---QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY------------AA 104 DY E F K + S + A A L +Y +A Sbjct: 67 GTAGFDYVVRED-FAGKTSRSNYPVLSAWNACERATSRFGLTFDKYKKPGKKTEDLGISA 125 Query: 105 RQVKQTVVGIGSAEKSQVQHMVRTLLKLPAN-PQADAADALAIAITH 150 +VK V G G+AEK +V+ VR + D +DA AI + Sbjct: 126 TRVKSLVAGSGNAEKDEVEAGVRRITGYDGTFANFDESDAAAIGLAW 172 >UniRef50_Q6J7Y5 Pas46 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q6J7Y5_9CAUD Length = 164 Score = 48.9 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 8/112 (7%) Query: 33 CIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAA 92 I+ K RL I V E +T D +E + N A G +G+ + Sbjct: 27 VIKPKRVKDA-RLPEIVDQVLEYVTGA--DLALLEML--PPNMKGAGITGMVQGIVRLEL 81 Query: 93 VNQELPVFEYAARQVKQTVVGIGSAEKSQVQ-HMVRTLLKLPANPQADAADA 143 +P + +K+ G G A K+++ + +A DA Sbjct: 82 QRAGIPYGDIGPSSLKKYATGKGGASKTEMALAALTR--GGAEISNDNACDA 131 >UniRef50_A4IS84 Putative phage protein n=3 Tax=Bacillaceae RepID=A4IS84_GEOTN Length = 186 Score = 48.9 bits (116), Expect = 8e-05, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%) Query: 6 GIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD-YF 64 GIDP TG ++ G + + I D P+R+ + VT + QPD + Sbjct: 28 GIDPSL-HTGLVILSGQG---KIIEAKEISKDGSD-PARMNALIQEVTYYV---QPDDFV 79 Query: 65 AIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE + LG + + +P + A VK+ G+A K +V Sbjct: 80 AIEG--FGYASQRGFLLGGIGWGMRMELYRRGVPYIDVAPSLVKKFAGAKGNANKEKV 135 >UniRef50_Q1CP43 Phage protein n=14 Tax=root RepID=Q1CP43_STRPF Length = 170 Score = 48.5 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 32/163 (19%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEI----IT 57 ++ L +D + TG+ + + + SG + K R K + + + I I Sbjct: 3 SLTLSLDVSTTGTGWAIFDGS----TLIQSGASKPKQKSFYERAKSMTSELKTIQLRAIQ 58 Query: 58 QF-QPDY-FAIEQ-VFMAKNADSALKLGQARGVA---IVAAVNQELPV--------FEYA 103 + +P IEQ + N S++K+G A G+ ++A + V F Y Sbjct: 59 KHDKPFEDIVIEQNTVLGPNQQSSIKIGIATGIILGRLLAEEIYFVNVSTWRKYWKFSYK 118 Query: 104 ARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAI 146 R K+++ K Q + V + D ADA+ I Sbjct: 119 DRS-KKSM-------KKQAINAVAAEFN--KQVKDDEADAILI 151 >UniRef50_B4BNF7 Putative uncharacterized protein n=1 Tax=Geobacillus sp. G11MC16 RepID=B4BNF7_9BACI Length = 222 Score = 47.7 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 9/117 (7%) Query: 6 GIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFA 65 GIDP R TG+ + G + + I + D P+R+ + V + + D+ A Sbjct: 63 GIDPSLR-TGFVALSPFG---EVIEAKEIE-REGDDPARMSELIQAVVD--SVHDTDFVA 115 Query: 66 IEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IE + LG + + +P + A +K+ G+A K +V Sbjct: 116 IEG--FGYASQRGFLLGGIGWGMRMELYRRGIPYIDVAPSLLKKFAGAKGNANKEKV 170 >UniRef50_UPI000174338C hypothetical protein cdivTM_33987 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174338C Length = 50 Score = 47.3 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 37 KVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF 70 LP RL+ IY + EII + PD ++E++F Sbjct: 7 NETPLPDRLEEIYNSLKEIIHETNPDIMSVEKLF 40 >UniRef50_A0Q9I8 Gp6 protein n=1 Tax=Mycobacterium avium 104 RepID=A0Q9I8_MYCA1 Length = 203 Score = 46.9 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 18/146 (12%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS---RLKLIYAGVTEIITQFQ 60 ++G+D G V LS K D L + R + + G+ + Sbjct: 11 VVGLDLSLTGAGIAAFDLVTGDLSTAVHRSQAPKSDTLGAHVARHRALVDGIVQQTIGCD 70 Query: 61 PDYFAIEQVFMAKNAD-SALKLGQARG----VAIVAAVNQELPVFEYAARQVKQTVVGIG 115 P +E + + +A S+L RG + VN PV E Q+KQ G G Sbjct: 71 PALVVVEGLRFSVSAQDSSLS---RRGFLWWAVVEGLVNAGAPVLEVTPSQIKQLATGKG 127 Query: 116 SAEKSQVQHMVRTLLKLPANPQADAA 141 +A K+ M+ L DA Sbjct: 128 NASKN----MIVAEYALR---WPDAT 146 >UniRef50_A6T1P7 Putative uncharacterized protein n=7 Tax=Proteobacteria RepID=A6T1P7_JANMA Length = 258 Score = 46.5 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 23/158 (14%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRL---KLIYAGVTEII 56 + IL +D G+ TG+ + GR G I + + P R + Y + Sbjct: 106 LPSILALDLGTT-TGWAL---RGRD------GTICSSSEAFKPQRFEGGGMRYLRFKRWL 155 Query: 57 TQFQPDYFAIEQVFMAKNADSA-LKLGQARGVAI--VAAV--NQELPVFEYAARQVKQTV 111 T+ + I+ VF + A + A G + + A + ++P +K+ Sbjct: 156 TEIKQSCDGIDAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHKIPYQGVPVGTIKKHA 215 Query: 112 VGIGSAEKSQVQHMVRTLLKLPANPQAD-AADALAIAI 148 G G+A K + M+ + + P D +DALAI + Sbjct: 216 TGKGNASKDE---MIGAMRQRGFQPGDDNESDALAILL 250 >UniRef50_UPI0001AF06E0 hypothetical protein AbauAB_10287 n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF06E0 Length = 200 Score = 45.4 bits (107), Expect = 8e-04, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 21/134 (15%) Query: 5 LGIDPGSRVTGYGV--IRQVGRQL------SYLGS--------GCIRTKVDDLPSRLKLI 48 +GIDP R G V I L +R DDL R K++ Sbjct: 6 IGIDPSLRNFGLVVAEIDISNDDYPFEIKDMMLAQTESSKETKKTVRKNSDDL-RRAKIL 64 Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVK 108 + G+ +I + + + +E + +A + + G+ I +P+ + +VK Sbjct: 65 HDGMMHMINKHKVTFAFVEIP---TGSQTARAMS-SYGICIGILSACPVPMIQLTPFEVK 120 Query: 109 QTVVGIGSAEKSQV 122 GI +A K ++ Sbjct: 121 LAGTGIKTATKHEM 134 >UniRef50_D0UWA9 Putative uncharacterized protein n=1 Tax=Streptomyces sp. ZL12 RepID=D0UWA9_9ACTO Length = 201 Score = 45.0 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 22/153 (14%) Query: 4 ILGIDPGSRVTGYG-------VIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEII 56 ++G+DP TG VI + G + RL + V +++ Sbjct: 19 VVGLDPSLTATGIASTRGWCEVIGYRKARAK--DPGITQLPHT---ERLTAMRNLVDQVV 73 Query: 57 TQF-QPDYFAIEQVFMAKNADSALKLGQARG----VAIVAAVNQELPVFEYAARQVKQTV 111 T PD IE ++++ A RG N +LP+ + Q Sbjct: 74 TAIGHPDLVVIELPAVSRSGGGA----HERGWFWWQLYNQLHNTQLPIGLLSPNQRALYA 129 Query: 112 VGIGSAEKSQVQHMVRTLLKL-PANPQADAADA 143 G G+A K V V + +AADA Sbjct: 130 TGKGNAAKGAVIDQVSRRFPAWSTDGNDNAADA 162 >UniRef50_Q858D2 Crossover junction endodeoxyribonuclease n=1 Tax=Salmonella phage epsilon15 RepID=Q858D2_9CAUD Length = 154 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 20/157 (12%) Query: 1 MAIILGIDPGSRVTG-YGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQF 59 MA +LGIDPG +G +I + G + +L I+ R+ A V + Q+ Sbjct: 1 MAAVLGIDPG--CSGSLVLITEQGHYIDHLAMPTIKVGTKS---RVN--GAAVAAWVRQY 53 Query: 60 QPDYFAIEQV--FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 + +EQV + S G A GVA +P + K++ G+ + Sbjct: 54 VITHAYLEQVGAMPGQGTASMFTFGHAAGVAEGILQGLNIPYTLVTPQAWKKS-AGLIGS 112 Query: 118 EKSQVQHMVRTLLKLPANPQADA-------ADALAIA 147 +K R + P DA ADAL IA Sbjct: 113 DKD--AARSRAIQLYPELRALDAKAKGQAIADALLIA 147 >UniRef50_B8IAN4 Putative bacteriophage-related protein n=3 Tax=Methylobacterium RepID=B8IAN4_METNO Length = 175 Score = 44.6 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 7/149 (4%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IL +D TG+ + G G + + +D+ L ++ I Sbjct: 1 MRKILALDLSVASTGWALGSPDGDPA--FGHYALPSTGNDIGKLLAAFQDWLSLKIAGED 58 Query: 61 PDYFAIEQVFMAKNAD---SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 E +++ +A KL GV + + E + K+ G G A Sbjct: 59 IALCVFEAPILSRGKTHVLTARKLMGLAGVTELICHRAAIRCVEEHLQTNKKRFAGHGHA 118 Query: 118 EKSQVQHMVRTLLKLPANPQADAADALAI 146 +K + H V + D ADALA+ Sbjct: 119 DKHTMMH-VARRYGWD-VTRDDEADALAL 145 >UniRef50_UPI0001BCAEA7 hypothetical protein FperA3_10306 n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEA7 Length = 177 Score = 44.2 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 18/118 (15%) Query: 42 PSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVF 100 R I + EII++++P IE F++ S L + G+ L ++ Sbjct: 56 HERNLEILYWILEIISKYRPYKAIIESPFISTFTIKSVGPLMKLHGIIDHFLFENGLEIY 115 Query: 101 EYAAR------QVKQTVVGIGSAEKSQVQHMVRT---LLKLPANPQA-DAADALAIAI 148 E + ++K K + V++ +L L + D +DA+ +A+ Sbjct: 116 EISPTSSRSYLKIKPN-------TKEEAFKFVKSKYPILDLTTFKKDNDKSDAVILAL 166 >UniRef50_C8XUH5 Conserved hypothetical phage protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUH5_9CAUD Length = 196 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 16/133 (12%) Query: 39 DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQ-ARGVAIV--AAVNQ 95 + R I ++ +PD +E + N+ ++ + Q A +++ A Sbjct: 57 ETPEERFYNICKWAEAVLLTEKPDAITLEG-YAMGNSKNSNNICQTAENTSLLKQALRRN 115 Query: 96 ELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL------------PANPQADAADA 143 VK+ G+A+K + +L + P D D+ Sbjct: 116 NFDFQIVTPSHVKKMFTDKGNADKHAMIAHFESLFNVNMRGIMDMLEVKDPKPIDDLVDS 175 Query: 144 LAIAITHCHVSQN 156 AI + +N Sbjct: 176 FAIMACGSYFIEN 188 >UniRef50_Q11J27 Putative uncharacterized protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11J27_MESSB Length = 183 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 24/172 (13%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +IL +D S G+ I + S + SG I+ + + + + + + ++I Q QP Sbjct: 2 LILALDVAS-KLGWA-IHDTDKTPSAILSGSIKLEGSNAFEKTQDMRRKLPKLIRQHQPA 59 Query: 63 YFAIEQV------FMAK--------------NADSALKLGQARGVAIVAAVNQELPVFEY 102 + A+E F K NA++ ++L G A + + Q +P Sbjct: 60 FAAMEAPLTFIPQFKKKTRTLMAVEEETSTINANTIMQLNWLAGAAEMVVLGQNVPCTLV 119 Query: 103 AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAI-THCHV 153 + R + + Q +L++ +P AD+ DA IA+ H Sbjct: 120 SPRTWQSIIPYHIRGAPKQRAKAYCDMLRID-SPNADSRDAAVIALWCAGHC 170 >UniRef50_C9DFZ6 Putative uncharacterized protein 24 n=1 Tax=Deftia phage phiW-14 RepID=C9DFZ6_9CAUD Length = 183 Score = 43.8 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 10/110 (9%) Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY 102 R ++ + Q + +E + + + + + + Sbjct: 64 ERYTILSDWAMSKLKQHGVEQVYLEGYALGSTTGLVFNIAENTALLKLKMWQAGIKFETP 123 Query: 103 AARQVKQTVVGIGSAEKSQVQHMVRTLLKLP----------ANPQADAAD 142 QVK+ G G+A+K + LL + P+ D AD Sbjct: 124 TPSQVKKFYTGNGAAKKPMMCDRFEALLGVRVSDECGCKRGDAPENDIAD 173 >UniRef50_C6CX51 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CX51_PAESJ Length = 190 Score = 42.7 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 53/164 (32%), Gaps = 25/164 (15%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGR---QLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIIT 57 M +GIDP + TG + + G ++ G+G + L + + +II Sbjct: 1 MVRFVGIDPAT-KTGVVALNERGDVVLEVELKGAGKAEKGGITIAQ-LVDLENQLYQIIE 58 Query: 58 QFQP-DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQ--TVVG- 113 P D IEQ + G G + L E Q K+ V G Sbjct: 59 ---PGDETVIEQAAAG--TQKGITTGMVHGGLRSIIHRKGLVYHEINPLQTKKYVGVTGW 113 Query: 114 IGSA----------EKSQVQHMVRTLLKLPANPQADAADALAIA 147 G A +K V V+ L + DA IA Sbjct: 114 KGEAGSKVRLKDKEKKEAVGKAVQELFGYRHK-SDNVVDAYIIA 156 >UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomonas RepID=A6VTC2_MARMS Length = 720 Score = 41.5 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 3 IILGIDPGSRVTGY--GVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG R G VI + G L G I +R + ++++I + Sbjct: 325 RVLGVDPGFRN-GVKLAVIDEQGS---LLDHGVIYPHGP--QNRTQEASTMLSQLIRKHN 378 Query: 61 PDYFAI 66 + AI Sbjct: 379 IGWVAI 384 >UniRef50_B6JDL8 Holliday junction resolvasome, endonuclease subunit n=21 Tax=cellular organisms RepID=B6JDL8_OLICO Length = 178 Score = 40.4 bits (94), Expect = 0.024, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 25/156 (16%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRL---KLIYAGVTEIITQF 59 IL +D GS TG+ + G I + V P+R + + +++ Sbjct: 27 ILALDLGST-TGWALRDTT---------GVITSGVQQFRPNRFEGGGMAFLRFNHWLSEL 76 Query: 60 --QPDYFAIEQVFMAKNADSALKLG-QARGVAIVA----AVNQELPVFEYAARQVKQTVV 112 P A VF + A L G + A +++P +K+ + Sbjct: 77 AGSPGPIA--AVFFEEVRAHAGTLAAHVYGGFLAHLEAWAEFRDVPYQGVPVGTIKRFIA 134 Query: 113 GIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAI 148 G G+A+K V V+ + A + ADA+AI + Sbjct: 135 GKGNADKQAVIAAVKA--RGFAPIDDNEADAIAILL 168 >UniRef50_Q1A0A9 Gp7 n=1 Tax=Mycobacterium phage Cooper RepID=Q1A0A9_9CAUD Length = 158 Score = 40.4 bits (94), Expect = 0.025, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 37 KVDDLPSRLKLIYAGVTEII--TQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVN 94 + R+ + + E +PD IE + SA L G I A Sbjct: 20 SKRAMCRRVNALLEQI-EWCFTDDERPDAMGIEALAYGAKGASAWVLPWIFGRVIELAEK 78 Query: 95 QELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 ++P+ + + G G+A+K V + A + ADAL + C Sbjct: 79 YDVPLTTVSTAGRAKFATGKGNADKETVLLAAARAVPEAAVTNNNEADALIVGAVVCQR 137 >UniRef50_B3FJ87 Putative uncharacterized protein n=1 Tax=Pseudomonas phage 201phi2-1 RepID=B3FJ87_9CAUD Length = 187 Score = 40.4 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 16/121 (13%) Query: 44 RLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQE--LPVFE 101 RL ++Y VT+ + + +P +E ++ + A++ L + V A + + + Sbjct: 66 RLMIMYDRVTQFLREVKPHGVVVEGNYLGRFANAFGSLVECVQVIRSAVYAYDPFMTLHL 125 Query: 102 YAARQVKQTVV-----GIGSAEKSQVQHMVRTLLKLP------ANPQADAADALAIAITH 150 VK + G +K V+ + L L + + D++AIA + Sbjct: 126 VDPTTVKTNIGMVKIRGT---DKEDVRKALSNLKSLDWDGINIDDLDEHSIDSVAIAYYY 182 Query: 151 C 151 Sbjct: 183 A 183 >UniRef50_C5D4D6 RNA binding S1 domain protein n=44 Tax=cellular organisms RepID=C5D4D6_GEOSW Length = 728 Score = 39.6 bits (92), Expect = 0.039, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 3 IILGIDPGSRVTG--YGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 I+LGIDP R TG V+ + G L I +++ + II ++ Sbjct: 321 IVLGIDPAYR-TGCKLAVVDETG---KLLKIDVIY--PHPPQQQIEEAREKLIRIIEEYH 374 Query: 61 PDYFAI 66 + AI Sbjct: 375 VEMIAI 380 >UniRef50_Q2L2F3 Phage protein n=3 Tax=Burkholderiales RepID=Q2L2F3_BORA1 Length = 217 Score = 38.8 bits (90), Expect = 0.067, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 18/151 (11%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGC--IRTKVDDLPSRLKLIYAG-VTEIITQFQ 60 IL +D G+ TGY + R+ GR + G + + Y ++ +IT Sbjct: 59 ILALDLGT-KTGYALRRRDGR----ITHGTEAFTPRASWTHGQKWQRYRAWLSRMITDHA 113 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGV--AIV--AAVNQELPVFEYAARQVKQTVVGIGS 116 A E V S + A G A++ A + + VK+ G G+ Sbjct: 114 VGIIAFEDVKAH--GKSGVLAAHAYGGYRAMLEMVADQHNIELVPVGVGVVKKHWTGKGN 171 Query: 117 AEKSQVQHMVRTLLKLPANPQAD-AADALAI 146 A+K MV P+ D ADALAI Sbjct: 172 ADK---AAMVAQAKARGYRPETDNDADALAI 199 >UniRef50_Q023G3 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023G3_SOLUE Length = 446 Score = 38.5 bits (89), Expect = 0.088, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%) Query: 4 ILGIDPGSRV-TGYGVIRQVGRQL-SYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ- 60 ILG+ PG + T +G + G ++ + G I T + RL + V + +++ Sbjct: 278 ILGLRPGEALATKWGDVTAQGLRITRRVYRGVIDTPKSNKGKRLAALSESVITDLQEWRD 337 Query: 61 --PDYFAIEQVFMAKNADSAL 79 P + + +F ++N ++ L Sbjct: 338 TSPHTASDDWIFPSENGNTPL 358 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=... 216 2e-55 UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=... 214 1e-54 UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=... 212 5e-54 UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=... 211 5e-54 UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=... 211 7e-54 UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=... 211 1e-53 UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=... 210 2e-53 UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=... 210 2e-53 UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=... 209 4e-53 UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=... 207 1e-52 UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=... 207 1e-52 UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=... 207 1e-52 UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=... 206 3e-52 UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=... 204 1e-51 UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=... 202 4e-51 UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=... 201 6e-51 UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=... 201 1e-50 UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=... 201 1e-50 UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=... 199 4e-50 UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=... 197 2e-49 UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=... 197 2e-49 UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=... 197 2e-49 UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=... 196 2e-49 UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=... 195 4e-49 UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=... 194 7e-49 UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxy... 192 4e-48 UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=... 191 8e-48 UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax... 190 2e-47 UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=... 189 3e-47 UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease ... 188 5e-47 UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=... 188 5e-47 UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=... 188 9e-47 UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=... 187 1e-46 UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=... 187 1e-46 UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=... 187 1e-46 UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=... 186 2e-46 UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=... 186 3e-46 UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=... 186 4e-46 UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=... 185 5e-46 UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=... 185 5e-46 UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=... 185 6e-46 UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=... 185 6e-46 UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=... 184 7e-46 UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=... 184 1e-45 UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=... 184 1e-45 UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=... 183 2e-45 UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=... 182 3e-45 UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=... 182 4e-45 UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=... 182 4e-45 UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=... 182 5e-45 UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=... 182 5e-45 UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=... 179 3e-44 UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistip... 179 3e-44 UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=... 179 4e-44 UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=... 178 8e-44 UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=... 178 9e-44 UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=... 177 1e-43 UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=... 177 1e-43 UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=... 177 1e-43 UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemm... 177 1e-43 UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=... 177 2e-43 UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=... 177 2e-43 UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=... 176 2e-43 UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=... 176 3e-43 UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=... 176 4e-43 UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=... 175 4e-43 UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=... 175 4e-43 UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=... 175 5e-43 UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=... 174 8e-43 UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=... 174 9e-43 UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=... 174 1e-42 UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=... 174 1e-42 UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=... 173 2e-42 UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=... 173 2e-42 UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=... 173 2e-42 UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=... 173 2e-42 UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=... 173 2e-42 UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=... 172 3e-42 UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea bla... 172 4e-42 UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=... 172 5e-42 UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=... 172 5e-42 UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=... 172 5e-42 UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=... 171 7e-42 UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=... 171 7e-42 UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=... 171 8e-42 UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=... 170 2e-41 UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=... 169 4e-41 UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=... 168 6e-41 UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=... 168 8e-41 UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=... 168 8e-41 UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=... 167 8e-41 UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=... 167 9e-41 UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=... 167 1e-40 UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=... 167 1e-40 UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=... 167 1e-40 UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=... 167 1e-40 UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=... 166 3e-40 UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=... 165 6e-40 UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subu... 164 9e-40 UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=... 164 2e-39 UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=... 163 2e-39 UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=... 163 2e-39 UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=... 162 4e-39 UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=... 162 4e-39 UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=... 162 5e-39 UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=... 162 6e-39 UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=... 161 7e-39 UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=... 161 8e-39 UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=... 160 2e-38 UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=... 159 4e-38 UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=... 159 4e-38 UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=... 158 6e-38 UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax... 158 8e-38 UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=... 157 1e-37 UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=... 157 1e-37 UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=... 157 1e-37 UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease ... 157 2e-37 UniRef50_D2UF38 Putative holliday junction resolvasome, endonucl... 157 2e-37 UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=... 156 2e-37 UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=... 153 2e-36 UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=... 153 2e-36 UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=... 153 2e-36 UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=... 152 5e-36 UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=... 151 1e-35 UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax... 151 1e-35 UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=... 150 1e-35 UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=... 149 3e-35 UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=... 149 5e-35 UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax... 147 9e-35 UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=... 147 1e-34 UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=... 147 1e-34 UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=... 147 2e-34 UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Lept... 146 4e-34 UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actin... 145 7e-34 UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=... 145 7e-34 UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Acti... 144 8e-34 UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subu... 143 2e-33 UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kyto... 143 2e-33 UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=... 142 3e-33 UniRef50_Q8F836 Holliday junction resolvasome endonuclease subun... 142 6e-33 UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (H... 141 1e-32 UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=... 141 1e-32 UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subu... 140 2e-32 UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=... 140 2e-32 UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax... 139 4e-32 UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=... 137 2e-31 UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2... 135 6e-31 UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax... 135 6e-31 UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=... 133 2e-30 UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=... 129 4e-29 UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=... 128 7e-29 UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax... 128 9e-29 UniRef50_A9VVH9 Crossover junction endodeoxyribonuclease RuvC n=... 127 1e-28 UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subun... 115 6e-25 UniRef50_B6ALY9 Probable crossover junction endodeoxyribonucleas... 114 2e-24 UniRef50_UPI00016C63C7 crossover junction endodeoxyribonuclease ... 112 4e-24 UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanoth... 110 2e-23 UniRef50_C3CV70 Crossover junction endodeoxyribonuclease ruvC n=... 110 3e-23 UniRef50_C0ZXA4 Putative uncharacterized protein n=1 Tax=Rhodoco... 107 1e-22 UniRef50_D2LVB2 Putative uncharacterized protein n=1 Tax=Bacillu... 106 3e-22 UniRef50_Q19Z77 Gp9 n=2 Tax=unclassified Siphoviridae RepID=Q19Z... 102 3e-21 UniRef50_B3VLT4 Gp5 n=9 Tax=unclassified Siphoviridae RepID=B3VL... 101 1e-20 UniRef50_B6JE97 Holliday junction resolvasome, endonuclease subu... 99 6e-20 UniRef50_B8IAN4 Putative bacteriophage-related protein n=3 Tax=M... 97 2e-19 UniRef50_Q19YZ7 Gp8 n=3 Tax=unclassified Siphoviridae RepID=Q19Y... 97 2e-19 UniRef50_A9U6S4 Predicted protein n=2 Tax=cellular organisms Rep... 94 2e-18 UniRef50_B4B914 Holliday junction resolvasome endonuclease subun... 92 6e-18 UniRef50_A7KUW6 RuvC n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7... 92 7e-18 UniRef50_C3IV59 Crossover junction endodeoxyribonuclease ruvC n=... 89 5e-17 UniRef50_B4AHF0 Putative uncharacterized protein n=1 Tax=Bacillu... 89 8e-17 UniRef50_Q8SD22 PHIKZ140 n=1 Tax=Pseudomonas phage phiKZ RepID=Q... 86 7e-16 UniRef50_C3RQB8 Predicted protein n=1 Tax=Mollicutes bacterium D... 86 7e-16 UniRef50_B8FNH8 Putative uncharacterized protein n=1 Tax=Desulfa... 85 1e-15 UniRef50_A6T1P7 Putative uncharacterized protein n=7 Tax=Proteob... 84 3e-15 UniRef50_C6ADE4 Phage related protein n=32 Tax=root RepID=C6ADE4... 83 4e-15 UniRef50_D0UWA9 Putative uncharacterized protein n=1 Tax=Strepto... 81 2e-14 UniRef50_B4BNF7 Putative uncharacterized protein n=1 Tax=Geobaci... 81 2e-14 UniRef50_UPI0001BCAEA7 hypothetical protein FperA3_10306 n=1 Tax... 80 3e-14 UniRef50_Q6VY77 Putative uncharacterized protein n=3 Tax=root Re... 80 4e-14 UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclea... 78 1e-13 UniRef50_A4IS84 Putative phage protein n=3 Tax=Bacillaceae RepID... 78 1e-13 UniRef50_D1JM27 Predicted protein n=1 Tax=Bacteroides sp. 2_1_16... 77 2e-13 UniRef50_A0Q9I8 Gp6 protein n=1 Tax=Mycobacterium avium 104 RepI... 76 5e-13 UniRef50_C3PY89 Predicted protein n=1 Tax=Bacteroides sp. 9_1_42... 75 1e-12 UniRef50_B1ZCZ8 Putative uncharacterized protein n=1 Tax=Methylo... 72 8e-12 UniRef50_Q1CP43 Phage protein n=14 Tax=root RepID=Q1CP43_STRPF 72 8e-12 UniRef50_UPI0001694EFC hypothetical protein Plarl_04065 n=2 Tax=... 72 1e-11 UniRef50_Q6J7Y5 Pas46 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q... 72 1e-11 UniRef50_Q858D2 Crossover junction endodeoxyribonuclease n=1 Tax... 67 2e-10 UniRef50_UPI0001AF06E0 hypothetical protein AbauAB_10287 n=1 Tax... 67 2e-10 UniRef50_A8V1X8 Putative uncharacterized protein n=1 Tax=Hydroge... 63 3e-09 UniRef50_UPI0001692F19 crossover junction endodeoxyribonuclease ... 61 1e-08 UniRef50_UPI0001693708 crossover junction endodeoxyribonuclease ... 61 2e-08 UniRef50_A9GHB7 Crossover junction endodeoxyribonuclease ruvC n=... 59 6e-08 UniRef50_UPI0001743ACA hypothetical protein cdivTM_35644 n=1 Tax... 50 4e-05 Sequences not found previously or not previously below threshold: UniRef50_Q1A0A9 Gp7 n=1 Tax=Mycobacterium phage Cooper RepID=Q1A... 67 2e-10 UniRef50_B8INW2 Putative bacteriophage-related protein n=1 Tax=M... 67 3e-10 UniRef50_B6JDL8 Holliday junction resolvasome, endonuclease subu... 63 3e-09 UniRef50_A6MAE5 Gp080 n=1 Tax=Lactococcus phage KSY1 RepID=A6MAE... 63 5e-09 UniRef50_C8XUH5 Conserved hypothetical phage protein n=1 Tax=Shi... 62 9e-09 UniRef50_C8ZKS9 N4 gp46-like protein n=2 Tax=unclassified N4-lik... 61 2e-08 UniRef50_Q11J27 Putative uncharacterized protein n=1 Tax=Chelati... 60 3e-08 UniRef50_B3FJ87 Putative uncharacterized protein n=1 Tax=Pseudom... 59 5e-08 UniRef50_C6CX51 Putative uncharacterized protein n=1 Tax=Paeniba... 58 1e-07 UniRef50_C9DFZ6 Putative uncharacterized protein 24 n=1 Tax=Deft... 57 3e-07 UniRef50_B2D1B4 RuvC n=4 Tax=Angel-like phages RepID=B2D1B4_9CAUD 56 6e-07 UniRef50_Q2L2F3 Phage protein n=3 Tax=Burkholderiales RepID=Q2L2... 56 6e-07 UniRef50_Q1V204 Crossover junction endodeoxyribonuclease n=3 Tax... 55 9e-07 UniRef50_B0CCS2 Putative uncharacterized protein n=1 Tax=Acaryoc... 51 2e-05 UniRef50_UPI0001B5292B hypothetical protein PrD11_07576 n=4 Tax=... 50 3e-05 UniRef50_A0MZD5 Gp46 n=1 Tax=Enterobacteria phage N4 RepID=A0MZD... 49 5e-05 UniRef50_D0RPS6 Crossover junction endodeoxyribonuclease n=1 Tax... 49 8e-05 UniRef50_O68755 Putative uncharacterized protein n=15 Tax=Entero... 48 1e-04 UniRef50_A8WA55 Gp67 n=1 Tax=Mycobacterium phage Giles RepID=A8W... 48 2e-04 UniRef50_D0MZC9 Putative uncharacterized protein n=1 Tax=Phytoph... 47 3e-04 UniRef50_O80273 Holliday junction endonuclease n=13 Tax=Lactococ... 46 6e-04 UniRef50_Q1WDI4 Putative uncharacterized protein n=2 Tax=root Re... 45 0.001 UniRef50_Q0GXV4 RuvC endonuclease n=1 Tax=Lactococcus phage Q54 ... 45 0.001 UniRef50_B2ZYB4 RuvC_resolvase like protein n=1 Tax=Ralstonia ph... 45 0.001 UniRef50_B3RGN1 Putative uncharacterized protein n=1 Tax=Escheri... 44 0.002 UniRef50_C5A7R7 Putative uncharacterized protein n=1 Tax=Burkhol... 44 0.002 UniRef50_C1TKV5 Putative uncharacterized protein n=1 Tax=Dethios... 44 0.002 UniRef50_Q89LL6 Blr4528 protein n=1 Tax=Bradyrhizobium japonicum... 43 0.003 UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomona... 43 0.003 UniRef50_UPI000174338C hypothetical protein cdivTM_33987 n=1 Tax... 43 0.004 UniRef50_Q2Z0X3 Putative uncharacterized protein n=1 Tax=Pseudom... 43 0.004 UniRef50_C3QU83 Predicted protein n=2 Tax=Bacteroides RepID=C3QU... 43 0.005 UniRef50_A3NLY3 Putative uncharacterized protein n=1 Tax=Burkhol... 42 0.007 UniRef50_A6W8U6 Putative uncharacterized protein n=1 Tax=Kineoco... 42 0.009 UniRef50_A9GLQ1 Putative uncharacterized protein n=1 Tax=Sorangi... 42 0.010 UniRef50_C9RK55 Tex-like protein protein-like protein n=6 Tax=Ba... 41 0.014 UniRef50_Q9PQY7 Uncharacterized protein UU157 n=10 Tax=Ureaplasm... 41 0.016 UniRef50_A7HPW3 Putative uncharacterized protein n=1 Tax=Parviba... 40 0.021 UniRef50_Q7MRD3 Putative uncharacterized protein n=1 Tax=Wolinel... 40 0.021 UniRef50_C9D3K7 Putative uncharacterized protein n=1 Tax=Silicib... 40 0.022 UniRef50_B1BZW1 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.025 UniRef50_B2V842 Putative Holliday junction resolvase n=4 Tax=Hyd... 40 0.032 UniRef50_B8I085 CRISPR-associated protein, Csn1 family n=1 Tax=C... 40 0.043 UniRef50_Q20XX4 CRISPR-associated endonuclease, Csn1 family n=2 ... 39 0.063 UniRef50_Q9EMN7 AMV162 n=2 Tax=Entomopoxvirinae RepID=Q9EMN7_AMEPV 39 0.078 UniRef50_Q9YBJ9 Putative uncharacterized protein n=1 Tax=Aeropyr... 39 0.082 >UniRef50_Q5P3C5 Crossover junction endodeoxyribonuclease ruvC n=21 Tax=Proteobacteria RepID=RUVC_AZOSE Length = 185 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 88/168 (52%), Positives = 106/168 (63%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 ILG+DPG R+TG+GVI ++G QL Y+ SGCIRT+ +LP RLK + GV E++ + P Sbjct: 10 TRILGLDPGLRITGFGVIDKLGNQLRYVASGCIRTRDGELPGRLKTLLDGVREVVAAYTP 69 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+VF+ N S L LGQARG I AV+ +LPV EY A QVKQ VVG G A K Q Sbjct: 70 DQVAVEKVFVNVNPQSTLLLGQARGAVICGAVSCDLPVHEYTALQVKQAVVGYGKAAKEQ 129 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQHMV+ LL L P DAADALA AI H H Q R R Sbjct: 130 VQHMVQRLLALDGCPSPDAADALACAICHAHGGQGTAGAFAGRRRAGR 177 >UniRef50_A3MP74 Crossover junction endodeoxyribonuclease ruvC n=182 Tax=Proteobacteria RepID=RUVC_BURM7 Length = 180 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 90/177 (50%), Positives = 108/177 (61%), Gaps = 7/177 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG RVTG+GVI G QL+Y+ SG I+T DLP+RL IY GV+ +I + PD Sbjct: 2 RILGIDPGLRVTGFGVIDVSGHQLAYVASGVIKTPTADLPTRLGTIYDGVSTLIREHTPD 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE+VF+ N S L LGQARG AI V+ LPV EY A Q+KQ VVG G A K Q+ Sbjct: 62 QAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKEQM 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQN-------AMQMSESRLNLARGRL 172 Q MV LL L P DAADAL +AI H H A +++ L + RGRL Sbjct: 122 QEMVARLLSLSGRPGTDAADALGMAICHAHGGNTLNTLGGIAPALAKKGLRVRRGRL 178 >UniRef50_B9LZC6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Geobacter sp. FRC-32 RepID=RUVC_GEOSF Length = 173 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 86/151 (56%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR+TGYG++ + G +L ++ +G I T D PSRLK IY ++EII ++PD Sbjct: 3 ILGIDPGSRITGYGIVTKEGNRLIHVDNGAIFTDSAKDFPSRLKRIYGSLSEIIETYRPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E +F + N SALKLGQARG AIVA VN L VFEY A QVKQ VVG G A K QV Sbjct: 63 AVAVENIFFSNNVQSALKLGQARGAAIVAGVNAGLDVFEYTALQVKQAVVGNGKAAKQQV 122 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHV 153 Q M++ LL LP Q DA+DALA+AI H H Sbjct: 123 QQMIKVLLNLPEIAQEDASDALAVAICHAHS 153 >UniRef50_Q1AWE2 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Bacteria RepID=RUVC_RUBXD Length = 179 Score = 211 bits (539), Expect = 5e-54, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ G+GV+RQ G +L Y+ G I T +P RL ++AGVTE+I ++P Sbjct: 9 VILGIDPGTATMGWGVVRQEGSRLRYVQHGAITTPSGWGMPRRLDRLFAGVTELIRGYRP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E++F N +A+ +GQARGVA++AA + VFEY QVKQ + G A+K Q Sbjct: 69 SAVAVEELFFNTNVTTAITVGQARGVALLAAYRAGVEVFEYTPLQVKQAITSYGRADKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLNL 167 VQ MVR LL L + P+ DAAD LAIAI H + + + Sbjct: 129 VQEMVRALLGLRSIPRPDDAADGLAIAICHAFSHRMSAATGVGKPRA 175 >UniRef50_Q8RAN4 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Clostridia RepID=RUVC_THETN Length = 165 Score = 211 bits (538), Expect = 7e-54, Method: Composition-based stats. Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 2/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GYGV+ + S + G I T D RL +Y G+ +II ++P Sbjct: 2 RVLGIDPGIATLGYGVVEYKNNKFSPIVYGAITTDAGVDKAFRLYTLYKGLEDIIKLYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE++F KN+ + + +G+ RG++I+AAVN + V+EY QVKQ VVG G AEK Q Sbjct: 62 EIVAIEELFYNKNSKTVITIGEVRGISILAAVNSGVKVYEYTPLQVKQAVVGYGRAEKQQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 VQ MV+ LL L P+ D ADALA+AI HCH + ++ R Sbjct: 122 VQQMVKVLLNLDEIPKPDDVADALAVAICHCHSNNMLERLGYGR 165 >UniRef50_B6BW71 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=beta proteobacterium KB13 RepID=B6BW71_9PROT Length = 175 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 4/173 (2%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD--DLPSRLKLIYAGVTEIITQF 59 ++GIDPG R+TGYG++ ++ +Y+ SG I+T + P RLK+I+ V+EI+++ Sbjct: 4 TRVIGIDPGLRITGYGIVDCENKKTTYITSGVIKTTSEKLPYPERLKIIFDEVSEIVSKH 63 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 QP+ IE+ F+ NA+S+L LGQARGVA+ A + +L ++EY A Q+K++VVG G AEK Sbjct: 64 QPNQMCIEKTFVNMNANSSLALGQARGVAMAAGIQHQLQIYEYTALQIKKSVVGNGHAEK 123 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 QVQ MV+ LL LP D++DALA + H V Q + S +N GR+ Sbjct: 124 IQVQSMVQKLLNLPEVLGPDSSDALACVLCHNQVMQ--INQDNSPINFKGGRI 174 >UniRef50_B8I1A2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=Bacteria RepID=RUVC_CLOCE Length = 166 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 2/165 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 II+GIDPG +TGYGV++ G + S L I T RL ++Y + ++I +F+P Sbjct: 2 IIMGIDPGFAITGYGVVKYEGNKFSVLDYNAITTVASMKFSDRLLVLYNELEKLINKFRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +IE++F KN +AL +G RGVA++AA + +FEY QVKQ+VVG G AEK+Q Sbjct: 62 DAISIEELFFNKNIKTALTVGHGRGVAVLAAAKSGIDIFEYTPLQVKQSVVGYGRAEKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRL 165 VQ MV+ +L LPA P+ D ADALA+AI H + + + R Sbjct: 122 VQQMVKAILNLPAIPKPDDVADALAVAICHGNSHRMGALLGNDRF 166 >UniRef50_A4XJS1 Crossover junction endodeoxyribonuclease ruvC n=11 Tax=Bacteria RepID=RUVC_CALS8 Length = 166 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 3/163 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG +TGYG+I + G + + G I T RL +Y + II+ +Q Sbjct: 2 RVLGIDPGIALTGYGIIESKNGSEFKVIDYGRIETSSSLKKSMRLLHLYTELCSIISLYQ 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE++F +KN+ +A+ +G+ARGV I+ + L ++EY QVKQ++ G G A+K+ Sbjct: 62 PDVVAIEELFFSKNSKTAITIGEARGVIILTCIQNNLSIYEYTPLQVKQSITGYGRADKT 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSE 162 Q+Q MV++LL L P+ D ADALA+A+ H S + + + Sbjct: 122 QIQKMVKSLLGLSEIPKPDDVADALAVAMCHILSSSSVLYQED 164 >UniRef50_C0ZAN2 Crossover junction endodeoxyribonuclease ruvC n=17 Tax=cellular organisms RepID=RUVC_BREBN Length = 166 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG + G+GV+ + G QL + G I+T+ +P RLK I+ + ++ ++P Sbjct: 2 RILGIDPGIAIVGFGVVDKEGSQLRPVQYGSIQTEAGLPVPLRLKQIFEAMQSLLETYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D ++E++F KN +A +GQARGV I+AA +PV+EY QVKQ V G G AEK Q Sbjct: 62 DEMSVEKLFFNKNVTTAFTVGQARGVIILAAELAGVPVYEYTPMQVKQAVTGYGGAEKKQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 +Q M + LL+L P+ D ADAL IAITH Sbjct: 122 IQEMTKLLLRLKEVPKPDDVADALGIAITHAQFRA 156 >UniRef50_A5D3F9 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Bacteria RepID=RUVC_PELTS Length = 164 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQPD 62 I+G+DPG+ +TGYG++ G + + + GCIRT RL+ +Y + EII + +P+ Sbjct: 3 IMGVDPGTAITGYGIVEYAGNRFALVECGCIRTMPGVPPAERLQALYGELVEIIKRHRPE 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +FA+E++F KN +AL +GQARGV ++AA LPVFEY QVKQ V G G A K+QV Sbjct: 63 HFAVEEIFFNKNTRTALTVGQARGVTVLAAAQSGLPVFEYTPLQVKQAVAGFGRAGKTQV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHV 153 Q+MV+T+L LP P D ADALA+AI H H Sbjct: 123 QYMVKTILALPEVPAPDDVADALAVAICHAHH 154 >UniRef50_B8CXG4 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Clostridia RepID=RUVC_HALOH Length = 165 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +ILG+DPG + GY +I + G + + G I T + RLK+I+ + II ++ P Sbjct: 2 VILGVDPGLAIVGYALIEKQGNKYRVIDYGSINTPSKLESVDRLKIIHTDMVNIINKYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E++F KN +A+++GQARGV ++A L ++EY QVKQ V G G A KSQ Sbjct: 62 DQMAVEKLFFNKNVKTAIEVGQARGVILLAGSQARLKIYEYTPLQVKQAVAGYGRAHKSQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 VQ MV+ LL L P+ D ADALAI+I H + + Sbjct: 122 VQRMVKALLNLNEIPKPDDVADALAISICHGNSYR 156 >UniRef50_A5WFD7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Gammaproteobacteria RepID=RUVC_PSYWF Length = 194 Score = 207 bits (527), Expect = 1e-52, Method: Composition-based stats. Identities = 95/184 (51%), Positives = 118/184 (64%), Gaps = 11/184 (5%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQF- 59 MAII+GIDPGSR+TGYG+I Q G L YL +G IRT ++P RLK I+ G+T I Sbjct: 1 MAIIIGIDPGSRMTGYGIIHQKGDTLRYLDAGTIRTDTKEMPERLKRIFQGLTRITQYHL 60 Query: 60 ----QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 +P + A+EQVFMA+N DSALKLGQARG AI A V +L V EY ARQ+KQ+V G G Sbjct: 61 KYSDEPIHAAVEQVFMAENPDSALKLGQARGAAIAALVALDLEVSEYTARQIKQSVCGYG 120 Query: 116 SAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ------MSESRLNLAR 169 +A+K QVQ MV +LKL PQ DAAD LA AI H H S + + + + + Sbjct: 121 AADKVQVQEMVCRILKLDVTPQQDAADGLACAICHAHSSHSMNKLLMNSTLRGRGTSKKK 180 Query: 170 GRLR 173 GR R Sbjct: 181 GRWR 184 >UniRef50_B2A5L6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RUVC_NATTJ Length = 161 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 2/160 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQP 61 II+G+DPG GYG+I G +L L G +RT D+ RL+ IY GV+ +I++F P Sbjct: 2 IIMGLDPGIAACGYGIIHAKGTKLECLACGVLRTYSDESATKRLESIYQGVSNLISEFSP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E +F AKN+ +A+K+GQA+GV ++AA + L +FEY QVKQ V G GSA K Q Sbjct: 62 NTVAVESLFFAKNSKTAMKVGQAKGVLMLAAAHNNLEIFEYTPLQVKQGVCGYGSASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQM 160 VQ MV+ +L L P+ DAADALA+++ H + ++ Sbjct: 122 VQKMVKQILSLDKIPKPDDAADALAVSLCHSQAYRLRTRL 161 >UniRef50_A0L4W0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Magnetococcus sp. MC-1 RepID=RUVC_MAGSM Length = 180 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 80/171 (46%), Positives = 106/171 (61%), Gaps = 2/171 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ++GIDPGS VTG+GVI +G++ + G IR LP RL I+A + +I + Q Sbjct: 7 IRVIGIDPGSNVTGWGVIDGLGQRQQVVEYGTIRLDGKEPLPMRLHQIHAQLVSLIQRLQ 66 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF+++N SALKLG ARG AIVA LP+ EY A QVK+ VVG G AEK+ Sbjct: 67 PHEMAVEEVFVSQNVQSALKLGHARGAAIVAGAQMGLPIAEYTAMQVKKAVVGYGRAEKN 126 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESRLNLARG 170 Q+Q M+R LL L P DAAD LAIA+ H + Q + + + L L RG Sbjct: 127 QMQEMMRMLLNLDKKPAQDAADGLAIAMCHLNQRQWHQQTLPAAILGLQRG 177 >UniRef50_Q183P3 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bacteria RepID=RUVC_CLOD6 Length = 169 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG + GYG+I + + G + T ++ RL+L+Y G+ I+ + Sbjct: 2 IILGIDPGIAIVGYGIIEYKNSKFKAIDYGAVTTPAHMNISRRLELVYKGIDTIVKNYNI 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +E++F KN +A+ + QARGV ++A + PV+EY QVKQ VVG G A+K+Q Sbjct: 62 DEVGMEELFFNKNVKTAITVAQARGVTMLACAHNGKPVYEYTPLQVKQGVVGYGRADKAQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 VQ MV + L L P+ D ADALA+AI H H ++ Sbjct: 122 VQQMVTSFLSLKKVPKPDDVADALAVAICHAHSNK 156 >UniRef50_Q3A232 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Deltaproteobacteria RepID=RUVC_PELCD Length = 161 Score = 201 bits (513), Expect = 6e-51, Method: Composition-based stats. Identities = 85/152 (55%), Positives = 108/152 (71%), Gaps = 1/152 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG+R+TGYG+I ++G +L ++ +G I T+ D L RLK IY G++ +I + P Sbjct: 2 RILGIDPGTRITGYGLIEKIGNRLLHVDNGAIYTRTDAPLADRLKTIYDGLSRVIADYAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E++F+AKNA SALKLG ARGVA++A VN LPV EY A +VKQ VVG G A K Q Sbjct: 62 TGVAVERIFVAKNALSALKLGHARGVAMLAGVNASLPVAEYTAVEVKQAVVGYGRAAKPQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHV 153 VQ MVR LL LP Q DA+DALA+AI H H Sbjct: 122 VQQMVRVLLNLPEIAQEDASDALAVAICHAHC 153 >UniRef50_A5EXG1 Crossover junction endodeoxyribonuclease ruvC n=7 Tax=Gammaproteobacteria RepID=RUVC_DICNV Length = 176 Score = 201 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 87/156 (55%), Positives = 107/156 (68%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR+TGYG+I G + Y+ SGCIR +P RL I+ G+ E++ Q+ P Sbjct: 5 RILGIDPGSRITGYGIIDVRGTAIDYVDSGCIRLATQLMPQRLMTIHQGIFELVQQYHPQ 64 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 FAIE +F+ KN +SALKLGQARGVAI AAV L + EYAA+ +KQ VVG G A+K QV Sbjct: 65 QFAIEAIFVHKNPNSALKLGQARGVAICAAVLSGLSINEYAAKSIKQAVVGKGGADKIQV 124 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 QHMV+ LL Q+DAADALA+AITH H Q Sbjct: 125 QHMVKILLNRQGAIQSDAADALAVAITHAHHLQTLA 160 >UniRef50_D1PPB4 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Ruminococcaceae RepID=D1PPB4_9FIRM Length = 194 Score = 201 bits (511), Expect = 1e-50, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 2/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG + G+GV+ VG + S +G G I T+ D RL IY V ++ ++ P Sbjct: 31 RVLGIDPGYAIVGWGVVEYVGNRFSPIGYGAILTEKDTPFEQRLCEIYDSVLDVCRRYAP 90 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + +IE+++ N + + + +ARGV ++AA +P++EY QVKQ + G G A K Q Sbjct: 91 EALSIEKLYYQHNQTTVIGVAEARGVILLAAAQCGVPIYEYTPMQVKQAITGYGKAVKKQ 150 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 +Q M R +L L P+ D ADAL +AI HCH S++ + ++ R Sbjct: 151 IQEMTRMMLHLETIPKPDDTADALGMAIAHCHCSRSRLMGTQPR 194 >UniRef50_C9KK51 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK51_9FIRM Length = 164 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDY 63 LGIDPG+ + G+G + G +L G I T + RL IY + +I +++PD Sbjct: 4 LGIDPGTAICGFGFVESRGSRLIPRAYGSIFTSPKMKMEDRLMKIYDELDALIKKYKPDV 63 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 +E++F +N +A+ +GQARG+ ++ A L + E Q+KQ V G G A+K QV Sbjct: 64 MGVEKLFFNRNVTTAIPVGQARGIVLLTAAKNGLRLVERTPMQIKQDVTGYGKADKKQVI 123 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 +MV +L LP P+ D ADALAIAI H + Sbjct: 124 YMVTKILNLPEPPKPDDTADALAIAICTTHCLNS 157 >UniRef50_Q2FQ00 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Methanomicrobiales RepID=Q2FQ00_METHJ Length = 164 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 3/157 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD--DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GYGV+ + GCI T D P RL IY + +I + P Sbjct: 8 VLGIDPGFARCGYGVVGKEKNTPVAYEWGCIETTPKTGDTPVRLLSIYDSIENLIRTYAP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A E++F ++N +A+++ +A+GV I+AA ++PVFEY +QVK + G G A+K Q Sbjct: 68 ACLACEKLFFSRNTTTAMQVSEAKGVIILAAAKHQIPVFEYTPKQVKLAITGSGLADKKQ 127 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNA 157 +Q M+ LL+L PQ DAAD LA+A+ H + + Sbjct: 128 IQMMITRLLRLSEIPQPDDAADGLALALCHVNWMRMR 164 >UniRef50_C8PU79 Crossover junction endodeoxyribonuclease RuvC n=4 Tax=Moraxellaceae RepID=C8PU79_9GAMM Length = 200 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 91/190 (47%), Positives = 118/190 (62%), Gaps = 17/190 (8%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR--TKVDDLPSRLKLIYAGVTEIITQ 58 M+I +GIDPGSR+TGYG+IR G +L +L +G I ++ + +P RLK I+ G++ I+ Sbjct: 1 MSIFIGIDPGSRLTGYGIIRLSGDKLEHLDAGTIHAYSQGETMPERLKRIFDGISRIVEH 60 Query: 59 FQ-----PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVG 113 +Q P AIEQVFMA N D+ALKLGQARG AI A V ++L V EY ARQ+KQ V G Sbjct: 61 YQKYTNEPMTAAIEQVFMASNPDTALKLGQARGAAIAAMVAKDLQVAEYTARQIKQAVCG 120 Query: 114 IGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ----------MSES 163 G+A+K Q+Q MV LL L PQADAAD LA AI H + SQ + S Sbjct: 121 YGAADKEQIQLMVMRLLSLEIQPQADAADGLACAICHAYHSQTLNKLLGGAAVIGGQSAG 180 Query: 164 RLNLARGRLR 173 + +GR R Sbjct: 181 GRSKKKGRWR 190 >UniRef50_C5SA55 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA55_CHRVI Length = 178 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 98/169 (57%), Gaps = 1/169 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPGSR TG+GVI G + SGCIR P RL LI+ V I+ ++QP Sbjct: 10 RILGIDPGSRNTGFGVIDTDGHHSVRVASGCIRVGEHPWPDRLGLIFDQVAAIVAEYQPH 69 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+EQ+ A++ +ALK+GQARG + A + V EY+ + VK VVG G A+KSQV Sbjct: 70 EMAVEQLIFARDPTAALKIGQARGAVLCAGLKGGAIVHEYSPKSVKLAVVGSGGADKSQV 129 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGR 171 QHMVR LL LP P D ADALAIA+ H H + + + R Sbjct: 130 QHMVRVLLALPETPGEDEADALAIALCHAHSMGIPAR-KRAAASWRDWR 177 >UniRef50_Q3IIJ0 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Gammaproteobacteria RepID=RUVC_PSEHT Length = 174 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 110/173 (63%), Positives = 133/173 (76%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGSR+TGYGV+ G + +YLGSGCI+ + RLK+IY G+T++I QF Sbjct: 1 MAIILGIDPGSRLTGYGVVAHQGSKFTYLGSGCIKLADHEFHIRLKMIYQGITQLIEQFS 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ FAIE+VFMA N DSALKLGQARG AIV A +LPVFEY+ARQ+KQ VVG G A+K+ Sbjct: 61 PETFAIEKVFMAHNPDSALKLGQARGAAIVGAAMADLPVFEYSARQIKQAVVGNGGADKT 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QVQHMV+ +LKLP PQADAADALAIAI H H QN ++++ S RGRLR Sbjct: 121 QVQHMVKNILKLPGTPQADAADALAIAICHAHSEQNLIKLAGSASKTVRGRLR 173 >UniRef50_A1WBZ4 Crossover junction endodeoxyribonuclease ruvC n=18 Tax=cellular organisms RepID=RUVC_ACISJ Length = 186 Score = 195 bits (497), Expect = 4e-49, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 107/174 (61%), Gaps = 7/174 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-------DDLPSRLKLIYAGVTEI 55 ILGIDPG + TG+GV+ G +L Y+ SG +RT DLP RLK+++ GV+E+ Sbjct: 2 RILGIDPGLQTTGFGVVDVDGHRLRYVASGTVRTTGRATGLALGDLPGRLKVLFDGVSEV 61 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 ++QP A+E +F+ N S L LGQARG A+ A VN LPV EY A Q+K+ VVG G Sbjct: 62 AARYQPSTAAVEIIFVNVNPQSTLLLGQARGAALTALVNANLPVAEYTALQMKKAVVGHG 121 Query: 116 SAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 A KSQVQ MVR LL+LP P DAADAL +AITH H ++ E R Sbjct: 122 RAAKSQVQEMVRRLLELPGLPGTDAADALGLAITHAHAGAAMARVGEVAQLTRR 175 >UniRef50_C7PP44 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Bacteroidetes RepID=C7PP44_CHIPD Length = 202 Score = 194 bits (495), Expect = 7e-49, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG+ V GYG+I G + S L ++ D RL+LI+A V E+I + +P Sbjct: 23 IILGIDPGTLVMGYGLILVEGSKASLLDMNVLKLSRHKDHYERLQLIHARVHELIREHKP 82 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE F KN S LKLG+A+GVAI A+ +PV EYA ++VKQ++ G G+A+K Q Sbjct: 83 VSCAIEAPFFGKNVQSMLKLGRAQGVAIATAMQAGVPVTEYAPKKVKQSITGNGNADKEQ 142 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMSESRLNLARG 170 + M++ +L P+ DA+DALA+A+ H + + + + Sbjct: 143 IWQMLQRILHFNERPEFLDASDALAVAVCHFFQESSVIPDTRKAKGWEQF 192 >UniRef50_Q1PYN7 Strongly similar to crossover junction endodioxyribonuclease RuvC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYN7_9BACT Length = 155 Score = 192 bits (489), Expect = 4e-48, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG+ + GYGVI + G ++ + G I+T + P RLK IY GVTE+IT ++PD Sbjct: 3 ILGIDPGTLIAGYGVIEKSGAEIKAVAYGSIKTGKNQNFPERLKTIYTGVTELITIYKPD 62 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E+VF KN +A+K+G+ RG+ + A +P+ EYAAR VK+ V G G+A K +V Sbjct: 63 HMAVEEVFFGKNFKAAIKIGEGRGIIFLCAAMANIPIAEYAARVVKKAVAGNGNAHKGKV 122 Query: 123 QHMVRTLLKLPANPQA-DAADALAIAITHCHV 153 Q MV+ +L LP PQ DA+DALAIAI H H Sbjct: 123 QEMVKAILGLPEIPQPEDASDALAIAICHGHR 154 >UniRef50_B2STK3 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Proteobacteria RepID=RUVC_XANOP Length = 174 Score = 191 bits (486), Expect = 8e-48, Method: Composition-based stats. Identities = 82/163 (50%), Positives = 102/163 (62%), Gaps = 2/163 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQV-GRQLSYLGSG-CIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG G+I G + ++ I D RLK + G+ E+I Sbjct: 1 MTRILGIDPGSQRTGIGIIDIDEGGRSRHVHHAPLILLGEGDFSQRLKRLLHGLGELIET 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++PD AIE+VFM K+A SALKLG ARG AI A V ++LPV EYAA +VK +VG G A+ Sbjct: 61 YRPDEVAIEKVFMGKSAASALKLGHARGAAICAVVMRDLPVHEYAATEVKLALVGKGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS 161 K QVQHMV +L L Q DAADALA+AITH HV A + Sbjct: 121 KVQVQHMVGIMLNLKGKLQPDAADALAVAITHAHVRATAQCLG 163 >UniRef50_Q2LRB0 Crossover junction endodeoxyribonuclease n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRB0_SYNAS Length = 181 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPGS VTG+G++ Q+ + + G IR K S L+ IY + ++ + QPD Sbjct: 25 VLGIDPGSVVTGFGIVEQIQERYIDIVHGEIRLKRGTSFTSSLEKIYDELFSLVEREQPD 84 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F KN S +K G RGVAI+A LPVFEY ++K+ VVG G AEK QV Sbjct: 85 AVAIEDIFYGKNIKSLIKQGHVRGVAILAGSKHHLPVFEYTPLEIKKAVVGYGHAEKIQV 144 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 Q+M++ ++KL P ADA+DA+A+AI H + + Sbjct: 145 QNMIKVIMKLSELPPADASDAIAVAICHLNHQK 177 >UniRef50_Q11T17 Crossover junction endodeoxyribonuclease ruvC n=69 Tax=Bacteroidetes RepID=RUVC_CYTH3 Length = 200 Score = 189 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+ V GYG+I G QL+ + G I D +L I+ ++ +I ++ P Sbjct: 13 IILGVDPGTNVMGYGLIAIKGTQLTLIQFGVIHLSKYTDHAIKLSKIFERISLLIEEYHP 72 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F N S LKLG+A+GVAI AA+++++P+FEYA +++KQ+V G G+A K Q Sbjct: 73 DEMAIEAPFFGSNVQSMLKLGRAQGVAIAAAISKQVPIFEYAPKKIKQSVTGSGNASKEQ 132 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVS 154 V M+ +L P+ DA DAL +A+ H Sbjct: 133 VAAMLSKILFFQEIPKLLDATDALGVAVCHYFQK 166 >UniRef50_UPI0001C31CBE crossover junction endodeoxyribonuclease RuvC n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CBE Length = 164 Score = 188 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+LGIDPG+ TGYGV+ Q ++ L G I T L RL I+ + E+I + +P Sbjct: 2 IVLGIDPGTANTGYGVVAQRRGRVVALDGGVIETPAGQALERRLATIHRRLCELIAEHRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ NA SA +GQARGV ++AA +L Y +Q+K V G G AEK Q Sbjct: 62 VAVAVEDLYFGANARSAFAVGQARGVVLLAAGQHDLACSSYTPQQIKSAVCGSGRAEKLQ 121 Query: 122 VQHMVRTLLKLPANPQAD-AADALAIAITHCHVSQNAMQMSES 163 VQ MV+ LL L P+ D AADALA+AI H + + A M + Sbjct: 122 VQQMVQRLLSLTELPRPDHAADALAVAICHTNRAPLAAAMVSA 164 >UniRef50_Q0VRJ9 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Gammaproteobacteria RepID=RUVC_ALCBS Length = 172 Score = 188 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 94/173 (54%), Positives = 124/173 (71%), Gaps = 1/173 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MA+ILGIDPGSR TGYGV+ VG + + G I T ++P RL I+AG+ +++ ++ Sbjct: 1 MALILGIDPGSRRTGYGVVDVVGNRSRAVAFGTITTSHKEIPPRLGEIFAGIDQVVKEYG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +IE+VFMA+NADSALKLGQARG AI A + +PVFEY+ARQVKQ VVG G AEK+ Sbjct: 61 PAEVSIEKVFMARNADSALKLGQARGAAIAAVMQACVPVFEYSARQVKQAVVGKGGAEKN 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR 173 QV MV+ LLKL PQ DAADALAIA+ H H+ + +M+ + ++ RGR+R Sbjct: 121 QVGEMVKYLLKLDQRPQEDAADALAIALCHAHMRLSLARMAGA-TSVRRGRVR 172 >UniRef50_Q87D03 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=Gammaproteobacteria RepID=RUVC_XYLFT Length = 173 Score = 188 bits (477), Expect = 9e-47, Method: Composition-based stats. Identities = 86/169 (50%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQV--GRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ 58 M ILGIDPGS+ TG GVI G + + RLK + G++ +I + Sbjct: 1 MTRILGIDPGSQRTGVGVIDVDEYGCSHHVYHAPLVLLGQSSFAGRLKQLLLGLSAVIEE 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P AIE+VFM+KNADSALKLGQARGVAI A V ++LPV EYAARQ+K VVG G A+ Sbjct: 61 YSPKEVAIEKVFMSKNADSALKLGQARGVAISAVVLRDLPVHEYAARQIKLAVVGRGGAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNL 167 K Q+QHMV +L L Q+DAADALA+AITH HVS A ++ S Sbjct: 121 KQQIQHMVGVMLNLQGRLQSDAADALAVAITHAHVSATAQRLGVSTKQA 169 >UniRef50_Q3AU83 Crossover junction endodeoxyribonuclease ruvC n=9 Tax=Chlorobiaceae RepID=RUVC_CHLCH Length = 192 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV++ S L +G IR + P R+ +I + ++I +FQP Sbjct: 2 IVLGVDPGSLKTGYGVVQHHNGSFSVLAAGVIRLQAAWSHPERIGIICRELEQVIAEFQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E F++ N +ALKLGQ RG I V LP++EYA R+VK + G G+A K Q Sbjct: 62 ERVALETAFLSHNVQAALKLGQVRGAVIGLVVRYALPIYEYAPREVKSAITGKGAATKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLNLAR 169 V MV +L L P+ D DAL IA+ ++ R N R Sbjct: 122 VAFMVSRMLSLHTVPKPHDVTDALGIALCDILRGESRQSGVPPRTNSRR 170 >UniRef50_B7ICN6 Crossover junction endodeoxyribonuclease ruvC n=14 Tax=Bacteria RepID=RUVC_THEAB Length = 157 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+G+DPG + GYG++ + ++S++ G I T+ D + RL IY E++ ++ P Sbjct: 2 RIIGVDPGYGILGYGILEKNKNKISHVTHGVITTEKDVPMYKRLGYIYDRFVELLEEYSP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE +F KN +A+ +G+ARGV ++A+ + +P++E+ QVK V G G A+K Q Sbjct: 62 DACAIESLFFYKNVKTAIHVGEARGVILLASSQRNIPLYEFTPYQVKNNVTGYGRADKKQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 VQ MV+ LL L P+ Sbjct: 122 VQKMVKMLLNLNDIPKP 138 >UniRef50_Q01TY0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Acidobacteria RepID=RUVC_SOLUE Length = 166 Score = 187 bits (475), Expect = 1e-46, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 94/164 (57%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+D GS TG+GVI G + +G IRT RL I + +I + P Sbjct: 2 RVLGVDCGSERTGWGVIDSDGGCHRMVAAGVIRTSPKCPFDRRLLEIGTALRGLIREHTP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++ A+E+VF A NA +ALKL RGVA++ + EY+ +VK +VVG G AEKSQ Sbjct: 62 EFAAVEEVFHAVNAKTALKLAHVRGVALLTIAEAGVVFAEYSPLEVKMSVVGYGRAEKSQ 121 Query: 122 VQHMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQMSESR 164 VQ MV++LL+LP DA+DALAIAI H + A + SR Sbjct: 122 VQMMVQSLLRLPEVIASEDASDALAIAICHA--THQATHEATSR 163 >UniRef50_A3N1F7 Crossover junction endodeoxyribonuclease ruvC n=267 Tax=cellular organisms RepID=RUVC_ACTP2 Length = 192 Score = 186 bits (474), Expect = 2e-46, Method: Composition-based stats. Identities = 127/162 (78%), Positives = 139/162 (85%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IILGIDPGSRVTGYGVIRQ GR L YLGSG IRT VDDLP+RLK IYAGVTEIITQF Sbjct: 1 MPIILGIDPGSRVTGYGVIRQTGRHLEYLGSGAIRTSVDDLPTRLKRIYAGVTEIITQFH 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FAIEQVFMAKNADSALKLGQARG AIVAAVN +LPVFEYAAR VKQTV GIGSA+K Sbjct: 61 PDMFAIEQVFMAKNADSALKLGQARGTAIVAAVNHDLPVFEYAARLVKQTVTGIGSADKI 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 QVQ MV +L+L + PQADAADALAIAITH H Q+++ +++ Sbjct: 121 QVQDMVTRMLQLSSKPQADAADALAIAITHAHSIQHSLIVAK 162 >UniRef50_C3JAC1 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Bacteria RepID=C3JAC1_9PORP Length = 192 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 4/168 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPG+++ GYG+IR Q L G I +D RL I+ +T +I +F P Sbjct: 8 IILGVDPGTQLMGYGLIRITASQPKLLALGVIELSKYEDHYLRLSHIFNRITGLIEEFLP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E F KN S LKLG+A+G A++A + + LP+ EYA ++KQ++ G GSA K Q Sbjct: 68 DEMALEAPFYGKNVQSMLKLGRAQGAAMIAGLQRGLPITEYAPLRIKQSITGSGSASKEQ 127 Query: 122 VQHMVRTLLKLPA---NPQADAADALAIAITHCHVSQNAMQMSESRLN 166 V M++ +L +PA DA D LA+A+ H + + N + S+ + Sbjct: 128 VAAMLQRILAIPAADMPKHLDATDGLAVALCHFYQTSNTLASSDKVIR 175 >UniRef50_C5CGL8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGL8_KOSOT Length = 168 Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 87/138 (63%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG GYG+I G ++S +G G I+T + +P+RL IY + EI+ +++ Sbjct: 6 TRILGIDPGFGTLGYGLIDVSGSKVSLVGYGVIQTKPGEPIPNRLLKIYDRLHEIVEEYR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE++F +N +A+++G+ARGV ++ +P+FEY QVKQ+V G G +EK Sbjct: 66 PDEAAIEELFFFRNVTTAIQVGEARGVVLLVLKQLSIPIFEYTPHQVKQSVTGYGRSEKG 125 Query: 121 QVQHMVRTLLKLPANPQA 138 Q+Q +++ L + P+ Sbjct: 126 QIQRVMKKFLGMNETPKP 143 >UniRef50_C0QT61 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Persephonella marina EX-H1 RepID=C0QT61_PERMH Length = 155 Score = 185 bits (471), Expect = 5e-46, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 +LGIDPG+ TG+ + + G++ + SG I+T P ++IY + I +F PD Sbjct: 5 VLGIDPGNYSTGFSIFKITGKKHRLVSSGTIKTSRKK-PENFRIIYESLERTINEFSPDE 63 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F N + +KLG+ RGV ++ + +PV+EY +QVK + G G A+K V Sbjct: 64 IALESSFYGNNPQTIIKLGEIRGVILLLSAFYRIPVYEYTPQQVKNAITGYGWAKKEDVY 123 Query: 124 HMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 MV+ L + D ADA+A+ HC Sbjct: 124 LMVQKLFNIK-PETNDEADAIAVGFCHCLSKN 154 >UniRef50_B0VHI8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VHI8_9BACT Length = 159 Score = 185 bits (470), Expect = 5e-46, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 II+G DPGSR GYG+++ R++ G I T+ L RLK +Y + +I+ ++ P Sbjct: 2 IIIGFDPGSRYCGYGLLQIESRKVLAAGCDVIDVTRGKTLALRLKSLYENIMQILEEYHP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E +F + S LG +RGV ++A QE+PV EY+ R++K++V G G+A K Q Sbjct: 62 EIAAVESIFFHRQVRSIFTLGHSRGVILLALAMQEIPVVEYSPREIKKSVCGNGNASKQQ 121 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQ 155 V++M+ L L +P+ DA DALA+A H + + Sbjct: 122 VRYMINQLYPLKESPKRDDAFDALAVATCHYNRMK 156 >UniRef50_D0MEQ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEQ0_RHOM4 Length = 191 Score = 185 bits (470), Expect = 6e-46, Method: Composition-based stats. Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 IILGIDPGSR TGYGV+ G + L I P RL ++ + I+ +++P Sbjct: 12 IILGIDPGSRHTGYGVLAVEGERARVLAVDVIHLDEQAAHPLRLLRLFEQLGAIVERYRP 71 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +N S LKLG+A+ A++A + +++P EY ++VK+ + G G+A K Q Sbjct: 72 DECALEMPVYGRNPQSMLKLGRAQAAAMLAVLTRQIPTVEYTPKEVKKALTGRGNATKEQ 131 Query: 122 VQHMVRTLLKLPANP---QADAADALAIAITHCHVSQNAMQMSESRLNLARG 170 V+ MV+ LL+LPA DA+DALA+A+ H + + AR Sbjct: 132 VRFMVQALLELPAEAARLALDASDALAVAVCH-WQHRTCPHAPRRYSSWARF 182 >UniRef50_B2S3B1 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Treponema RepID=RUVC_TREPS Length = 196 Score = 185 bits (470), Expect = 6e-46, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 3/170 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +II+GIDPG TGYGVI G L L G I T+ +RL+ I+ + ++I+ +Q Sbjct: 17 SIIVGIDPGLESTGYGVIEAGGGSLRCLTYGVIVTQSNQPSAARLRHIFDTLQQVISIYQ 76 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P Y A+E ++ AKN SAL + QARGV ++A Q + V EYA +K+ + GI AEK Sbjct: 77 PQYCAVETIYFAKNVTSALCVAQARGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEKR 136 Query: 121 QVQHMVRTLLKLPANPQAD-AADALAIAITHCHVSQNAMQMSESRLNLAR 169 QVQH+V+ LL L P D AADALA+A+TH H ++ + Sbjct: 137 QVQHLVKILLNLKDIPHPDHAADALAVAVTHVHCCMSS-NYAVGSTRSRG 185 >UniRef50_Q5HCG1 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=canis group RepID=RUVC_EHRRW Length = 160 Score = 184 bits (469), Expect = 7e-46, Method: Composition-based stats. Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 4 ILGIDPGSRVTGYGVI---RQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQF 59 I+GIDP TG+ ++ ++ + +G I T + RL IY+ + I+ + Sbjct: 3 IIGIDPSLNSTGWAILSVHDNNYNEIRLVDNGSILTSNKKTIGERLNKIYSELLNILNSY 62 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 + D ++E++F+ KN S+ L ARGV ++ +P+FEY+A +VK+++ G G A+K Sbjct: 63 KVDTASMEEIFINKNPKSSTLLCYARGVLLLTLNVACIPLFEYSANRVKKSITGNGHAKK 122 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 QV M+ +L + + D +DA+A+AI H + + Sbjct: 123 EQVCFMIENILNIKCHGTYDISDAIAVAICHIYSIK 158 >UniRef50_Q31H85 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Gammaproteobacteria RepID=RUVC_THICR Length = 172 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 90/137 (65%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 + ILGIDPGSR TG+G+I +Y+ SG IR + RLK I+ V +II Q+Q Sbjct: 4 LKRILGIDPGSRKTGFGIIESGRFHPNYVSSGVIRVEKLTGAQRLKTIFESVCQIIDQYQ 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIE+VF+ KN SA+KLGQARGV + AA +E+P+ EY Q+K T+VG G A K Sbjct: 64 PHVMAIEKVFVYKNPSSAIKLGQARGVILCAAAIKEIPIMEYTPTQIKSTIVGQGHATKD 123 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQ MV+ LLKL +PQ Sbjct: 124 QVQFMVQNLLKLTESPQ 140 >UniRef50_C7LQQ7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQQ7_DESBD Length = 173 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 99/167 (59%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IILG+DPGSR GYG++R+ LS + +G +R + + +RL L+Y ++E++ P Sbjct: 6 IILGVDPGSRCMGYGLVRERSGVLSLVEAGVVRPGEEAMSARLGLMYTRISELLHAHSPH 65 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF A+N+ SALKLGQARG + A VF Y VK+++VG G AEKSQV Sbjct: 66 AVAVENVFFARNSASALKLGQARGAVLAACGVHGAEVFGYEPTLVKKSLVGAGRAEKSQV 125 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 MV LL + + DA DALA+AI H + S+ ++ + R Sbjct: 126 SFMVGQLLGVKPDWAEDAGDALALAICHLNHSRFLAAVAAGQNGATR 172 >UniRef50_Q1MRQ2 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Desulfovibrionaceae RepID=RUVC_LAWIP Length = 168 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 1/162 (0%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQF 59 M ++GIDPGSR TG+G++ +V L + G I+ RL I+ ++ II ++ Sbjct: 1 MISVIGIDPGSRNTGWGIVHEVSGVLHLVCCGVIQPSCNGSFAERLAHIFQEISSIIMKY 60 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P ++EQVF A+N +ALKLGQARG A+VA NQ L + +Y A +K+T+VG G A K Sbjct: 61 KPVEASVEQVFTAQNPLTALKLGQARGAAVVACANQGLLIKDYEATTIKKTLVGHGRATK 120 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS 161 QV MV L + + D +DALA AI H + + + + Sbjct: 121 EQVSFMVGRSLGVKPDWPIDTSDALATAICHLTIRRFENRTA 162 >UniRef50_D1JHV6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=uncultured archaeon RepID=D1JHV6_9ARCH Length = 162 Score = 182 bits (463), Expect = 3e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 ++GIDPG+ TG+GV+ +L + G ++T RLK IY + +I P Sbjct: 2 RVIGIDPGTARTGWGVVELNNGRLKPIDFGYVKTTTAQSNAERLKKIYYDLLAVIKAVTP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE +F N +AL +GQARGV ++AA ++P +EY +VK + G G A KS+ Sbjct: 62 DVMAIEMIFFNTNVKTALSVGQARGVCLLAAAISDIPAYEYNTSEVKSIITGYGRATKSE 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAM 158 V V LKL P+ D DALAIA TH + N Sbjct: 122 VATSVMEKLKLEEMPKPDDVTDALAIAATHIIRNSNLQ 159 >UniRef50_B4S5F6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Chlorobiaceae RepID=RUVC_PROA2 Length = 187 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 I+LG+DPGS TGYGV+ G++ S + G IR + R+K+IY + II ++ P Sbjct: 2 IVLGVDPGSVHTGYGVVLCNGQKFSLVACGLIRLSSNQSIADRIKIIYDELGAIIAEYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E ++ +N SALKLGQ RG + +N+ L + EYA R+VK + G GSA K Q Sbjct: 62 QRLALETAYVNRNPQSALKLGQVRGAIVALTMNKGLELHEYAPREVKYVLTGKGSAGKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ---NAMQMSESRLNLARG 170 V +M R L + + D DAL IA+ + + S SR + G Sbjct: 122 VSYMARHFLNIQEPIKPYDVTDALGIALCDLLCDAKGGSPRRGSGSRKSARGG 174 >UniRef50_C0R1L6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Brachyspira RepID=RUVC_BRAHW Length = 160 Score = 182 bits (462), Expect = 4e-45, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 I LGIDPG GY I + SG I T + + RL IY + E+I +++P Sbjct: 2 ITLGIDPGFARCGYAFIEAKNSAYKIVDSGLIETFQNQEYNQRLSFIYTQLDELIKKYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE++F +KN +A+K+ +ARGV I+A + EY ++VK + G G+A K Sbjct: 62 NNAAIEELFFSKNTKTAIKVAEARGVIILALTLNNIEFQEYKPKEVKSQITGNGNANKDA 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 + MV L Q D ADA+AIA+ H ++ Sbjct: 122 MMKMV-NLFTGSNIIQDDTADAVAIALAHASRNR 154 >UniRef50_C0N2T3 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N2T3_9GAMM Length = 178 Score = 182 bits (462), Expect = 5e-45, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 119/175 (68%), Gaps = 4/175 (2%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M ILGIDPGSR TG+G+I G+++ ++ +G + + RLK I+ G+T++I ++Q Sbjct: 1 MPRILGIDPGSRKTGFGIIELDGKKIKHVINGRLMVGDGEFADRLKQIFEGLTDLIDRYQ 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE+VF+ KNADSALKLGQARG AI AAV+++L V EY+A Q+K+ VVG G A+K Sbjct: 61 PEMMAIEKVFLHKNADSALKLGQARGAAICAAVSKDLAVAEYSATQIKKAVVGNGHAKKD 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ--NAMQM--SESRLNLARGR 171 QVQ+M+ +L LP P+ DAADALA A+TH + + N + R + GR Sbjct: 121 QVQYMMSVILSLPEVPEEDAADALACALTHANHASIGNPQRKLPEGMRTSRRGGR 175 >UniRef50_Q1GWB3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Sphingomonadales RepID=RUVC_SPHAL Length = 156 Score = 182 bits (462), Expect = 5e-45, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 IILG+DP TG+G+IR G ++S++ +G I+T LP RL + + +I P Sbjct: 2 IILGLDPSLSCTGWGLIRVEGSRISHIANGQIKTDAKAALPDRLVHLDTALAAVIADHAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+VF+ N S LKL ARGV ++ L V +YA R VK+ +VG G A K Q Sbjct: 62 KCAAVEEVFVNDNPQSTLKLAHARGVVLLGCARGGLTVTQYAPRLVKKAIVGTGGAAKGQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 VQ M+ LL DAADALA+AI H + + Sbjct: 122 VQAMLGVLLPGTKVAGPDAADALAVAICHANHRR 155 >UniRef50_B3QTP6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RUVC_CHLT3 Length = 186 Score = 179 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LG+DPGS VTGYGVI + IR D P R+K IY + ++I ++P Sbjct: 2 ITLGVDPGSIVTGYGVIGKSEAGFRVFDYSAIRPGGKCDFPQRIKYIYDTLEKVICAYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E F KNA SALKLGQ RG I+ A+N L EY+ R+VK++V G G+A K Q Sbjct: 62 TQLSLETAFYGKNAQSALKLGQVRGAIIILAMNYNLKFVEYSPREVKKSVAGTGNASKEQ 121 Query: 122 VQHMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 V +MV+ +L + D +DALAIA+ H +M SE + + Sbjct: 122 VAYMVKKMLSIDDEKMALDTSDALAIALCG-HFKSASMAASEFKKQSRK 169 >UniRef50_B0N025 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N025_9BACT Length = 211 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQFQPDY 63 +GIDPG+ GYGV+ GR++ + G I + P +L+ I+ V ++ +++P Sbjct: 1 MGIDPGTNYMGYGVLEVCGREVRSVVLGDIDLHRMNDPYEKLRYIFERVGALVDEYRPRE 60 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 A+E F +N S LKLG+A+GVA+ AA+++ L VFEYA ++KQ + G GSA K QV Sbjct: 61 VALESPFFGENVQSMLKLGRAQGVAMAAALSRGLQVFEYAPTRIKQCITGRGSAPKEQVA 120 Query: 124 HMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 +V ++L + P + DA D +A+A+ H +S N + + Sbjct: 121 ALVSSMLTIERPPRRLDATDGMAVALCHHFMSSNPLNGALGEDRFKG 167 >UniRef50_B5YJT8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RUVC_THEYD Length = 156 Score = 179 bits (454), Expect = 4e-44, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 4/159 (2%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF 59 M +I GIDPGSR GYG++ Q+ + + I D LP RLK IY + ++ ++ Sbjct: 1 MTVI-GIDPGSRHFGYGIVDAK--QMKLIHANTINLSHDISLPYRLKSIYEILLSMVEKY 57 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 PD A+E++F+ K S+ LG AR +A + A +E+PV+EY++ ++K+ + G G A K Sbjct: 58 SPDEMAVEKIFVGKKITSSFVLGYARAIAFLVAAQKEIPVYEYSSTEIKKALTGYGRAHK 117 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 QV+ MV L + D ADALA+AI H + N M Sbjct: 118 VQVKSMVYNFLHIDKKISYDCADALAVAICHINSKTNFM 156 >UniRef50_D2QZ57 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Planctomycetaceae RepID=D2QZ57_9PLAN Length = 186 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPG +TGYGVI VG + +G +R + L +R+ IYAG+ ++I P Sbjct: 15 RVLGVDPGLGITGYGVIELVGMSPKIIEAGVVRGRSGATLAARIGEIYAGIHDVIQSLAP 74 Query: 62 DYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 AIE+++ + +A+ +G ARG ++A +PV YA+ QVK+ + G G A K Sbjct: 75 TELAIEELYSHYDRPRTAILMGHARGAILLAGHQAGIPVLSYASTQVKKLLTGNGRAPKD 134 Query: 121 QVQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMSESRLN 166 Q+Q+ V LKL A P+ D ADALAIA+ H H+S++ + ++ L Sbjct: 135 QMQNAVCRELKLAAPPEPPDVADALAIALCHIHLSRSGLHIATPGLT 181 >UniRef50_C9LLE5 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLE5_9FIRM Length = 165 Score = 178 bits (451), Expect = 9e-44, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 2/156 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG+ G+G++ + G ++ + G I T K + RL ++Y GV E+I ++P Sbjct: 2 RVLGIDPGTGRCGFGIVEKHGNRIVPINYGVIETFKEQNSLERLNIVYEGVAELIEMYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + +E ++ N + +++ QARGV ++A Q +P QVKQ + G G AEK Q Sbjct: 62 HFMGVESLYFNTNITTGIEVAQARGVILLAGYRQSVPAVNVTPLQVKQQLAGYGRAEKKQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQN 156 V MV ++ + DAADALAI +T + ++ Sbjct: 122 VIEMVMRIMHINTKINPDDAADALAIGLTAIYQMEH 157 >UniRef50_Q5HS68 Crossover junction endodeoxyribonuclease ruvC n=27 Tax=Epsilonproteobacteria RepID=RUVC_CAMJR Length = 160 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 76/156 (48%), Gaps = 1/156 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ILGIDPGSR GY +I + + +G I+ K L ++ + G+ I D Sbjct: 5 ILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQYQITELCEGLDLIFKNHSFDE 64 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 AIE +F A N + LKL Q RG + + EY QVK+ V G A K QV Sbjct: 65 VAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYTPLQVKKAVTGKAKATKEQVA 124 Query: 124 HMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAM 158 MV+ LL L + + D DA+A+A+TH + + Sbjct: 125 FMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV 160 >UniRef50_D1CG18 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG18_THET1 Length = 171 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 85/138 (61%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG+ + G+G++ G+ G IRT LP RL +I+ + E+I + + Sbjct: 3 IRVLGLDPGTAIVGFGLVIFDGQSYQPEKYGVIRTPSKTPLPHRLLMIHEQLDELIEELK 62 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P++ A+E+VF A+ +AL +G ARGV ++ A LP+FEY QVKQ ++G G AEK Sbjct: 63 PEHVAVEEVFFARATTTALAVGHARGVILLTAAEHNLPIFEYTPLQVKQAIIGYGGAEKK 122 Query: 121 QVQHMVRTLLKLPANPQA 138 Q+Q ++ LL+L + P+ Sbjct: 123 QIQQFIKNLLRLESIPKP 140 >UniRef50_Q6MFA6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Parachlamydiaceae RepID=RUVC_PARUW Length = 168 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 62/138 (44%), Positives = 84/138 (60%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 IILG+DPG+++TG+GVIR G Q + GCIR L R +I GV ++I Q Q Sbjct: 5 VIILGLDPGTKITGFGVIRIEGHQYVPVDYGCIRPPSHYKLSERYLVICQGVEQLIDQHQ 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E +++KN SA+KLG ARGV ++AA + +P++EYA + K VVG G A K Sbjct: 65 PHAVVVETQYVSKNVQSAMKLGMARGVIMIAAKKRGIPIYEYAPSKAKLAVVGTGRASKY 124 Query: 121 QVQHMVRTLLKLPANPQA 138 QVQ MV+ LL L P Sbjct: 125 QVQGMVQRLLNLSIPPTP 142 >UniRef50_C1A616 Holliday junction endonuclease RuvC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A616_GEMAT Length = 181 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 87/138 (63%), Gaps = 1/138 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 +++LGIDPG+ VTGYGV+ GR + + G IRT D LPSRL I+ GV E+I + + Sbjct: 5 SLVLGIDPGTAVTGYGVVASDGRATTLVECGVIRTNAKDPLPSRLLDIHEGVRELIARHR 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +IE VF A+N + L LG ARGV ++A EL + EYA ++K+ + G G A K Sbjct: 65 PDTLSIEDVFFARNVRTTLVLGHARGVILLAGQQAELTIHEYAPTEIKKAITGRGGATKE 124 Query: 121 QVQHMVRTLLKLPANPQA 138 QVQ+MV LL L P+ Sbjct: 125 QVQYMVARLLHLKHAPEP 142 >UniRef50_B5EJL7 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJL7_ACIF5 Length = 185 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 101/159 (63%), Gaps = 1/159 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 I+GIDPGS TGYG+I +L ++ GC+ R+ IY + +II + Sbjct: 20 VRIIGIDPGSLRTGYGIIESDAAGELRHVAHGCLNVSGQPFLERIGAIYRELKQIIGTYH 79 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIEQVFMA+NADSALKLGQARG A+VA + LPV EY A Q+K+ VG G A K Sbjct: 80 PEEAAIEQVFMARNADSALKLGQARGAALVALLEAGLPVEEYTALQIKKAAVGGGHAAKE 139 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ 159 QVQ MVR LLKL NPQADAADALA AI H H + + Sbjct: 140 QVQSMVRWLLKLSENPQADAADALACAICHAHHGRTRQR 178 >UniRef50_Q2RZ65 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Salinibacter ruber DSM 13855 RepID=RUVC_SALRD Length = 179 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 98/170 (57%), Gaps = 4/170 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++ G + + IR DD P+RLK IY + ++I P Sbjct: 2 IILGVDPGSRATGYGLVDPSGGDEHLVAADTIRLADTDDHPTRLKQIYDALVDVIDAHGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FA+E +N S LKLG+A+ A++AA+N++LPV +Y ++VK++V G G+A K Q Sbjct: 62 DEFAVEMPVYGQNPQSMLKLGRAQAAAMMAALNRDLPVAQYTPKEVKKSVTGNGNASKKQ 121 Query: 122 VQHMVRTLLKLPANP-QADAADALAIAITHCHVSQNAMQMSESRLNLARG 170 V M+ ++L D ADALAIA+ H + + +S A Sbjct: 122 VGFMIESILSAREQTFAHDTADALAIALCHGNRDAH--DDGDSYTGWASF 169 >UniRef50_C6VXA4 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXA4_DYAFD Length = 174 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 14 TGYGVIRQVGRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQPDYFAIEQVFMA 72 GYGVI G+Q+S + G I +LK I+ +T++I + PD AIE F Sbjct: 1 MGYGVISVKGQQISLVQYGVIHLSKYSTHELKLKKIFERLTQLIEDYLPDEMAIEDPFYG 60 Query: 73 KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 132 KNA S LKLG+A+GVA+ AA+ + +P+ EY+ ++VKQ+V G G+A K QV +M+ +LK+ Sbjct: 61 KNAQSMLKLGRAQGVAMAAALARNIPIVEYSPKKVKQSVTGSGNASKEQVAYMLEKILKM 120 Query: 133 PANPQ-ADAADALAIAITHCHVSQNAMQMSE 162 + + DA D +AIAI H + + + ++ Sbjct: 121 ELSREFMDATDGIAIAICHQYHANSPASVAT 151 >UniRef50_A7HNS2 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Thermotogaceae RepID=RUVC_FERNB Length = 166 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 ILGIDPG + GYGV+ ++G +++Y+ G I+T+ + RL IY V EII ++ P Sbjct: 2 RILGIDPGYGIVGYGVVEKLGNKIAYVSHGAIKTEKGEHFEDRLDYIYNQVNEIIEKYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE ++ KN +A+ +G+ARGV ++A + +P E+ QVK TV G G AEK+Q Sbjct: 62 ELVAIESLYFYKNVKTAIYVGEARGVILLAIKHSNIPFVEFTPHQVKLTVTGYGRAEKTQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 +Q +++ LLKL P+ Sbjct: 122 IQKVMKILLKLNEIPKP 138 >UniRef50_Q7US71 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Rhodopirellula baltica RepID=RUVC_RHOBA Length = 178 Score = 176 bits (446), Expect = 4e-43, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 3/165 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 + ILGIDPG TGY VI + G +L +G I+++ D LP RL+ I+ G++E+ Sbjct: 14 SCILGIDPGLNTTGYAVISREGPRLCLREAGVIKSRRSDTLPERLREIHVGLSEVFAVHA 73 Query: 61 PDYFAIEQVFMAKN-ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 D A+EQ+F + +A+ +G ARGV +AA + +PV Y +VK+ + G G A K Sbjct: 74 VDLMALEQLFSHYDRPRTAILMGHARGVICLAAASAGVPVEHYEPTRVKKVMTGNGRAPK 133 Query: 120 SQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSES 163 SQ+Q V+ L L + P+ D ADA+AI++ +++ N + + + Sbjct: 134 SQIQLAVKMQLNLQSVPEPADVADAMAISLCGHYLANNPIDQALA 178 >UniRef50_B3E789 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_GEOLS Length = 178 Score = 175 bits (445), Expect = 4e-43, Method: Composition-based stats. Identities = 85/168 (50%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPGSR+TGYG++ Q G +L +L +G + T D P RL+LI+ G++ +I ++ P Sbjct: 2 RVLGIDPGSRITGYGLVEQHGSRLVHLDNGAVFTDKAKDFPDRLRLIFEGLSRVIAEYAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E V++++N +ALKLGQARG AI AAV+ LPVFEY A QVKQ VVG G A K Q Sbjct: 62 DAVAVEDVYVSENVRAALKLGQARGAAIAAAVHAGLPVFEYTASQVKQAVVGQGRAGKEQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQ MV+ LL LP QADA+DA+A+AI H + Q +Q + R Sbjct: 122 VQKMVKALLGLPEIAQADASDAVAVAICHINSYQLRLQAGPAVATSRR 169 >UniRef50_Q3SGT0 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Proteobacteria RepID=RUVC_THIDA Length = 171 Score = 175 bits (445), Expect = 4e-43, Method: Composition-based stats. Identities = 89/170 (52%), Positives = 116/170 (68%), Gaps = 1/170 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDPG R+TG+G+I Q G++L+Y+ SG +++ LP+RL +++ G+ E+I ++PD Sbjct: 2 RILGIDPGLRLTGFGLIEQTGQKLAYVASGVVKSGEGSLPARLGILFGGINEVIATYRPD 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 A+E VF+ N S L LGQARG AI AAV+ +L V EY A Q+KQ VVG G A K+QV Sbjct: 62 TCAVEIVFVNVNPQSTLLLGQARGAAICAAVSNDLTVAEYTALQIKQAVVGHGKAAKTQV 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 Q MV+ LL LP P ADAADALA AITH H S+ Q S + L GRL Sbjct: 122 QEMVKRLLALPIAPTADAADALACAITHAHGSRLGAQ-STAGYRLKGGRL 170 >UniRef50_C9LHH6 Crossover junction endodeoxyribonuclease RuvC n=7 Tax=Prevotella RepID=C9LHH6_9BACT Length = 235 Score = 175 bits (444), Expect = 5e-43, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 88/170 (51%), Gaps = 4/170 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPG+ + GYGV+ ++ G I + D+ +L I+ + II F P Sbjct: 34 VILGIDPGTNLLGYGVLHIRNNKVEMEAMGVIDLRKVKDVYLKLGRIHERIIGIIDSFHP 93 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE F KN S LKLG+A+GVAI AA+++++P+ EYA ++K + G G A K Q Sbjct: 94 DELAIEAPFFGKNIQSMLKLGRAQGVAIAAAISRDIPIHEYAPLKIKMAITGNGQASKEQ 153 Query: 122 VQHMVRTLLKLPA---NPQADAADALAIAITHCHVSQNAMQMSESRLNLA 168 V ++ +L L DA DALA A H + + A Sbjct: 154 VADFLKRILSLKEEQMLSYMDATDALAAAYCHYLQDGREEKTLGVPHSWA 203 >UniRef50_Q30NQ3 Crossover junction endodeoxyribonuclease ruvC n=25 Tax=Epsilonproteobacteria RepID=RUVC_SULDN Length = 159 Score = 174 bits (443), Expect = 8e-43, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M ILGIDPG+R GY +I +++ + +G I+ K ++L ++ + I + Sbjct: 1 MT-ILGIDPGTRKMGYALISLEKGKIALIEAGLIKIKAEELQFQIPQMVEAFEGIFKNHK 59 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 D AIE +F A N + +KL Q RG ++ + Q EY A QVK+ + G G A K Sbjct: 60 IDEVAIEDIFYAHNPKTTIKLAQFRGAIMLMLIQQFGQFSEYTALQVKKALTGNGKATKE 119 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 QV M + LL + + D DA+A+AITH + Q Sbjct: 120 QVAFMAKRLLNIKKEIKPLDITDAIAVAITHSQRVRLKQQ 159 >UniRef50_Q3ZZK5 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Dehalococcoides RepID=RUVC_DEHSC Length = 167 Score = 174 bits (443), Expect = 9e-43, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG+ V GYG+I +L+ +G + +P RL IY G+ E+I +QP Sbjct: 2 RILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYKGLVEVIELYQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E F KN SAL +G+A+ VA++AA N LPV EY+ +K V G G+A K Q Sbjct: 62 DEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVTEYSPACIKSRVAGSGNASKEQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 +Q MVR LL L PQ DAADALA+AI H Sbjct: 122 IQEMVRLLLNLAEIPQPNDAADALAVAICHHSQRA 156 >UniRef50_C8WP55 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Coriobacteriaceae RepID=C8WP55_EGGLE Length = 192 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 85/144 (59%), Gaps = 5/144 (3%) Query: 1 MAI----ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEI 55 MA ILGIDPG TG+G++ Q G +L+ GC+ T D L RL+ I+ + + Sbjct: 1 MARTERTILGIDPGLANTGWGIVEQRGPRLACTAYGCVSTAKDLPLAQRLRKIHEQMAAV 60 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 I +F+P IE V+ N SA GQARG A+VA ++L V E++ Q+K VVG G Sbjct: 61 IARFEPACVGIETVWFGVNVQSAFATGQARGAALVACAERDLEVLEFSPSQIKLAVVGTG 120 Query: 116 SAEKSQVQHMVRTLLKLPANPQAD 139 SAEK QVQ+MVR LL L P+ D Sbjct: 121 SAEKDQVQYMVRQLLALEDIPRPD 144 >UniRef50_Q8D387 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RUVC_WIGBR Length = 161 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 107/156 (68%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M+II+GIDPGS VTGYG+I+ L ++ SG I K D RLK+IY + II +F+ Sbjct: 1 MSIIIGIDPGSYVTGYGIIKSEKNTLKHIKSGSIFLKKHDFKKRLKIIYICIKNIINKFK 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P YF IEQ+F +KN S LKLGQA A +AA+N ++ +FEYA++++K+ +VG G A+K Sbjct: 61 PKYFVIEQIFFSKNPSSVLKLGQASCAATLAAINLDILIFEYASKKIKKILVGDGKAKKL 120 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 QV++ V ++L L + D +DALA+AITH ++ N Sbjct: 121 QVKNKVCSILNLSKSIGIDTSDALAVAITHHYLINN 156 >UniRef50_B8E2P3 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Dictyoglomus RepID=RUVC_DICTD Length = 158 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 2/152 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +++G DPG+ +TGYG++ + +S + G + T + RL ++ V+ ++ + P Sbjct: 2 VVIGFDPGTAITGYGILNKGEDGISIIEYGALTTPSGWGIGRRLNYLFDQVSSLLDLYNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +E +F KN +A+ +GQA+GV I+AA + + +VK +VVG G A K+Q Sbjct: 62 DVVVMENIFFNKNIKTAINIGQAQGVIILAAEQHQKEISILTPLEVKLSVVGYGRATKNQ 121 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCH 152 +Q+MV+ +LKL P+ D ADALA+ I++ + Sbjct: 122 IQYMVKEILKLKDIPKPDDVADALALCISYIY 153 >UniRef50_Q14IH0 Crossover junction endodeoxyribonuclease ruvC n=20 Tax=Gammaproteobacteria RepID=RUVC_FRAT1 Length = 171 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 88/168 (52%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +ILGIDPGSR+TG+GVI+ ++ Y+ SGCIR P RLK I G+T+II + P Sbjct: 2 VILGIDPGSRITGFGVIKVQDNKIYYVASGCIRITEITTPKRLKQIADGITQIINIYAPT 61 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIEQ+FM +N A+KLGQARGVA+ L V EY+A+Q+KQ VVG G A KSQV Sbjct: 62 EAAIEQIFMFQNPMGAIKLGQARGVAMCTLAINNLEVSEYSAKQIKQAVVGTGGAAKSQV 121 Query: 123 QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSES-RLNLAR 169 QHMV++LL L P DAADALAIAI H H S++ ++S + R++ R Sbjct: 122 QHMVQSLLGLSKKPPEDAADALAIAICHYHSSKSLAKISGASRVSQKR 169 >UniRef50_C9RLA6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA6_FIBSS Length = 189 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGS TGY +++ G Q+ L G +L RL I + + + + P Sbjct: 2 VILGIDPGSITTGYAFLKKTGNQIQVLEYGTFHANATKNLEDRLVHIVTELEKRLDHYHP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E VF AKN SAL LG RG +VA + + EY + VKQ V G G+A K Sbjct: 62 DALAMEGVFFAKNVKSALVLGHIRGAILVACHRRGMTYEEYPPKVVKQAVTGNGAASKEH 121 Query: 122 VQHMVRTLLKL-PANPQADAADALAIAITHCH 152 V +M+ L + + DA+DALAIA TH + Sbjct: 122 VANMIFAHLGIVGGDLPLDASDALAIAWTHAN 153 >UniRef50_B3CN07 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Wolbachia RepID=RUVC_WOLPP Length = 165 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 1 MAIILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQ 58 M I+G+DPG TG+ +IR + + +LG G I T + RL +I+ + ++I Sbjct: 1 MIKIIGLDPGMSKTGWAIIRLEEKNNIKFLGGGTISTDGKLGVGERLHIIFEQLKKVIFL 60 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + P+ A+E++F+ KN S+L LG AR +AI+ +LP+ EY A +K+++ G G A+ Sbjct: 61 YSPNEAAVEKIFINKNPKSSLTLGYARAIAILILRMTDLPMNEYDANYIKKSITGNGHAD 120 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 K Q+ MV+ ++K ADALA AI H + Sbjct: 121 KGQIIFMVKQIVKSSNIKCHHTADALATAICHAYTKN 157 >UniRef50_D1BA53 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Synergistaceae RepID=D1BA53_THEAS Length = 165 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 1 MAI---ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEII 56 M LGIDPG GYG++RQ G LS G G I T LP RL ++ + + Sbjct: 1 MPRDLLCLGIDPGIGTLGYGLVRQRGGDLSAEGYGAIHTPPGLSLPERLSCLFGSLEGEL 60 Query: 57 TQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGS 116 +PD A+E+++ +N +A + QARGV ++ A +PV E +VK V G G Sbjct: 61 GGVRPDLVAVERLYFGRNTTTAEMVWQARGVVLLFASRLGVPVLEPKPSEVKMAVCGYGG 120 Query: 117 AEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHC 151 A+K QVQ MV LL L P D ADALA+AI Sbjct: 121 ADKRQVQLMVTGLLGLKRCPSPDDVADALAVAIAGL 156 >UniRef50_D1Y1N9 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1N9_9BACT Length = 172 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 85/164 (51%), Gaps = 2/164 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 + LGIDPG GYG + Q G L GC+ T D R+K +Y GV E I P Sbjct: 9 VCLGIDPGIGRLGYGFVCQSGSSYRALAYGCLETPPHQDTSVRIKALYDGVREQIENCSP 68 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + ++E+++ +N +A + Q RG ++ LP+ E +VK TV G G+AEK Q Sbjct: 69 HFMSVERLYFGQNRTTAEAVWQVRGAILLLGAQYRLPIIEPKPSEVKLTVCGDGTAEKRQ 128 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESR 164 VQ M++ LL LP P+ D ADAL IA+ + ++ R Sbjct: 129 VQLMIQQLLNLPEIPRPDDTADALGIALAGLAIVRSPQYAYGRR 172 >UniRef50_A4BHV9 Holliday junction resolvase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHV9_9GAMM Length = 171 Score = 172 bits (437), Expect = 4e-42, Method: Composition-based stats. Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 2/171 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILGIDPGSR TG+G+I Q G ++ Y+ SG IR + L RL LIY V+EII QF P Sbjct: 1 MILGIDPGSRKTGFGLINQHGTRMEYVSSGVIRVHKEPTLADRLDLIYTSVSEIIEQFSP 60 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIEQVFM + DSALKLGQARG AI+A + V+EYAAR+VKQ+V G G+A+K Q Sbjct: 61 ACMAIEQVFMGRGPDSALKLGQARGAAIIAGTQARIDVYEYAARKVKQSVAGNGNADKDQ 120 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 + +MV+++LKLP PQ DAADALAIA+ H + + ++ + + RGR+ Sbjct: 121 IGYMVKSILKLPGVPQEDAADALAIALCHAYNHTGLVNIAGA-THSRRGRV 170 >UniRef50_A9BB56 Crossover junction endodeoxyribonuclease ruvC n=24 Tax=cellular organisms RepID=RUVC_PROM4 Length = 158 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILGIDPG GYG+I Q L G I+T D + R+ I + +I +++P Sbjct: 2 IILGIDPGLARVGYGLIDCNMTQKKMLDCGIIKTSQDHNDGERMVEITRDLRYLINKWKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E+ F + + + +K+ QARGV I+ +P+ E+ Q+K V G G A K + Sbjct: 62 QIASVEKFFFYR-SSTTIKVVQARGVVIMTLARFRVPILEFPPMQIKLAVTGSGKANKDE 120 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 V V L L P+ DA+DALAIA+T + + Sbjct: 121 VSMAVIRELDLSKPPRPDDASDALAIALTAYYQQR 155 >UniRef50_Q73LJ8 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Treponema denticola RepID=RUVC_TREDE Length = 178 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 1/139 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQ 60 ++GIDPG TGYG+I + + G I T+ L RL I+ V+E+I +++ Sbjct: 15 PCVIGIDPGLANTGYGIISFSNNRFECIEYGSISTEPHLLQGERLLKIFDKVSELIEKYR 74 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P IE ++ AKNA SA+ + +ARGV ++A + V EYA +K+ V GI AEK Sbjct: 75 PKEAGIETLYFAKNATSAMSVSEARGVVLLALAQGGVRVGEYAPNSIKKAVTGIAQAEKR 134 Query: 121 QVQHMVRTLLKLPANPQAD 139 QVQ V+ +L L P+ D Sbjct: 135 QVQEAVKLILGLKEIPRPD 153 >UniRef50_Q6MKB6 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bdellovibrio bacteriovorus RepID=RUVC_BDEBA Length = 168 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 1/162 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 +ILG+DPGSR+TG+GV+R ++ ++ G I DD P R+ + + E++ +++P Sbjct: 4 VILGVDPGSRITGFGVVRVANGKIEHINHGVIVMDGDDAFPRRMTELGSAFREVMEKYKP 63 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + IE++F+ KNADSA KLG ARGV + A V EYA R VK+ V G G A K Sbjct: 64 EQVVIEKIFLGKNADSAFKLGHARGVIMYEAGLGGAEVQEYATRSVKKGVTGNGGASKED 123 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSES 163 VQ +++ +L L + DA+DALA+A H + M + Sbjct: 124 VQAILKVMLSLKTISRIDASDALAMACYHAFEMKKKALMQRA 165 >UniRef50_A9FR00 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RUVC_SORC5 Length = 179 Score = 171 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 +LGIDPGSR G+G++ + G ++ ++ G I +RL I + ++I P Sbjct: 2 RVLGIDPGSRHLGWGLLVRQGTRIEHVAHGVIDIDTSGTFAARLVEIDDELGKVIASHAP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +F AK+A SA KLG ARGV ++ +P+ EY VK+T+VG G+AEK+Q Sbjct: 62 DAAAVESLFFAKDAQSAAKLGHARGVVLLRLARAGVPISEYPPALVKRTIVGRGAAEKAQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITH 150 V ++ +L+L A P+ DAADALAIA+TH Sbjct: 122 VAQVMTAVLRLAAPPRPDAADALAIAMTH 150 >UniRef50_B0SUN7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Alphaproteobacteria RepID=RUVC_CAUSK Length = 169 Score = 171 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ 60 ILG+DPG R TG+GV+ G ++S++ G I + SRL ++ G+ +I + Sbjct: 9 IRILGLDPGLRRTGWGVVSVEGSRMSHVAHGVIVPDEKGEFASRLLCLFEGICAVIDAHR 68 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+VF+ NA S LKLG AR A++A L V EY+ R VK+ VVG G+A+K+ Sbjct: 69 PDEAAVEEVFLNTNAQSTLKLGHARAAALIAPARAGLLVAEYSTRLVKKAVVGTGAADKA 128 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVS 154 Q+ M+ LL AD ADALA+AITH ++ Sbjct: 129 QIGFMIARLLPTAGKTTADCADALAVAITHANLR 162 >UniRef50_C7ML17 Crossover junction endodeoxyribonuclease RuvC n=6 Tax=Coriobacteriaceae RepID=C7ML17_CRYCD Length = 174 Score = 171 bits (434), Expect = 8e-42, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQP 61 I++GIDPG TG+G++ Q G +LS GCI T L SRL IY + +I ++P Sbjct: 5 IVMGIDPGLAHTGWGIVNQTGLRLSCEAYGCIVTTAAQPLSSRLNKIYEQIGAVINHYRP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 IE ++ N SA GQARG A+VA ++ V EY +K VVG GSA+K Q Sbjct: 65 ACVGIETIWFGNNVTSAFATGQARGAALVACAQGKIQVGEYTPSAIKMAVVGTGSADKHQ 124 Query: 122 VQHMVRTLLKLPANPQAD 139 VQ+MV +L L PQ D Sbjct: 125 VQYMVAQILGLATEPQPD 142 >UniRef50_A1QYH7 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Borrelia turicatae 91E135 RepID=RUVC_BORT9 Length = 161 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 4/156 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSG-CIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 ILGIDPG G+G++ + G + Y+ G I L RLKLI + II F+P Sbjct: 4 RILGIDPGLANVGWGILDRKGSKYMYVQDGTVITHPFMSLKDRLKLISDEIILIIDNFKP 63 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D +IE ++ AKN +A+ + +ARG I+ + L +EY QVK ++ G G EK Q Sbjct: 64 DVASIENIYFAKNKKTAISVSEARGAIILTFALKNLDFYEYTPIQVKNSISGFGRIEKVQ 123 Query: 122 VQHMVRTLLKLPAN---PQADAADALAIAITHCHVS 154 V++++R LL + + ++DALA+AI H + Sbjct: 124 VKYVIRILLGMKPDFIFTSDHSSDALALAICHGNYH 159 >UniRef50_Q5NR76 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Alphaproteobacteria RepID=RUVC_ZYMMO Length = 167 Score = 169 bits (428), Expect = 4e-41, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 7/170 (4%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 I LG+DPG TG+G I G +LS++ +G IRT L RL L++ + +I QP Sbjct: 2 IFLGLDPGLGTTGWGAITVEGNRLSHIANGQIRTDPSMALARRLALLHDALAAVIASHQP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+V NA S LKLGQARG+A+ + L V EY VK+ VVG GSA+K Q Sbjct: 62 EMAAVEEVLGNSNAQSTLKLGQARGIALFSLAEAGLSVGEYHPNVVKKAVVGTGSADKKQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGR 171 VQ MV LL DAADALA+AITH H + +R R R Sbjct: 122 VQAMVSRLLPGVKLAGPDAADALAVAITHAHHH------ASARGYARRVR 165 >UniRef50_A5CES8 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Orientia tsutsugamushi RepID=RUVC_ORITB Length = 159 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 1/148 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 IILGIDP TG+GVI ++Y+ SG I+T D L +L I + ++IT+F P Sbjct: 2 IILGIDPSLVSTGWGVISISDSMVNYIDSGVIKTVSKDSLVLKLGNISLMIEKLITRFNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + A+E+VF+ KN S++ L QARG + + EYA ++K+ +VG G AEK Q Sbjct: 62 FHVAMEEVFINKNYSSSVTLIQARGAIMSVIGRYNIDFSEYAPNKIKKAIVGAGKAEKHQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAIT 149 VQ MV+ L+ + D +DALA A T Sbjct: 122 VQQMVKLLMHIKKAISKDESDALATAYT 149 >UniRef50_C5SH09 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SH09_9CAUL Length = 192 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+G+DPG R G+GV+ G +L+++ G I +L RL ++ ++++I ++ Sbjct: 6 IRIIGLDPGLRRLGWGVLDVEGARLNWVAHGVILPDEKAELSVRLLYLFEELSKVILLYR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIE+ F+ N S LKLG AR A++A L V EYAA VK++VVG G A+K Sbjct: 66 PQEAAIEETFVNMNPASTLKLGHARAAAMLAPAQAGLSVAEYAALDVKKSVVGAGRADKD 125 Query: 121 QVQHMVRTLLKLPANPQ----ADAADALAIAITHCHVSQNAM 158 Q+ M++ LL A + D ADALA+A+TH H ++ + Sbjct: 126 QILFMIKRLLPRAAAAENGLTPDMADALAVAVTHAHKRKHRL 167 >UniRef50_A6C6Z1 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Planctomyces RepID=A6C6Z1_9PLAN Length = 170 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 3/157 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 LGIDPG TGY +++Q + G IR+ + +L +R+ I +G+ E+I ++Q Sbjct: 10 VRFLGIDPGLNRTGYALLQQSVKGPVLCEGGIIRSNQEANLAARVHEIASGIREVIAEYQ 69 Query: 61 PDYFAIEQVFM-AKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 PD IEQVF + S++ + ARG + AA + +PV Y Q+K+ + G G A K Sbjct: 70 PDVMVIEQVFTTPRFPKSSIIMAHARGAILFAAHDAGVPVVHYTPTQIKKLITGSGRASK 129 Query: 120 SQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQ 155 Q+QH ++T L L A + D ADA A A+ H H + Sbjct: 130 EQMQHAIKTELGLKAILEPNDVADAFAAALCHYHTIR 166 >UniRef50_Q2GLU6 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Anaplasma phagocytophilum HZ RepID=RUVC_ANAPZ Length = 163 Score = 167 bits (425), Expect = 8e-41, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%) Query: 4 ILGIDPGSRVTGYGVI-RQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQP 61 + G+DPG TG+ V+ ++ LS L +G I T DL +L I++G++ II +F Sbjct: 3 VFGLDPGLNYTGWAVVLKEPSGSLSLLDTGTICTTSCSDLNDKLFCIFSGLSAIIQKFSV 62 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +IE VF+ N +++ L AR +++A ++ + +FEY+ ++K+ V G G A K Q Sbjct: 63 SVASIENVFVNLNPKASMFLCYARAASLLACLSSNVKIFEYSPTKIKKCVFGNGRASKEQ 122 Query: 122 VQHMVRTLLKLPAN--PQADAADALAIAITHCHVSQNA 157 + +VR+ L L + + A+DA+A A+ H S N Sbjct: 123 IAFVVRSSLGLSEDASFSSHASDAIAAALCHIFSSGNR 160 >UniRef50_B0B876 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Chlamydiaceae RepID=RUVC_CHLT2 Length = 170 Score = 167 bits (425), Expect = 9e-41, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 5/156 (3%) Query: 4 ILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+GIDPG+ V GY +I+ R + G ++ L R K ++ ++ I+ Q P Sbjct: 5 IMGIDPGTLVCGYALIKVENRYHIHPHSFGKVKLSQKLALAHRYKQLFTEISTILQQESP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E ++ KN S +KLG ARGV ++AA Q++PVFEYA K+ VG G+A K Q Sbjct: 65 KAVVLETQYVHKNPQSTIKLGMARGVLLLAASLQDVPVFEYAPNTAKKAAVGKGNASKKQ 124 Query: 122 VQHMVRTLLKLPANP---QADAADALAIAITHCHVS 154 VQ MV LL++P D ADA A+A+ H H++ Sbjct: 125 VQLMVSKLLRVPDLLAEDNEDIADAFALAMCHAHLA 160 >UniRef50_Q1RHA5 Crossover junction endodeoxyribonuclease ruvC n=16 Tax=cellular organisms RepID=RUVC_RICBR Length = 157 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 2/149 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 I+LGIDP G+ V+ + +L YL SG I+T D + RL I + + ++I +++P Sbjct: 2 IVLGIDPALGSLGWAVVAKESAKLKYLASGVIKTSSKDEIHHRLSYINSILEKVILEYKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE+ F+ N+ ++LKLG ARG + +L + E+ +K+TV G G AEK Q Sbjct: 62 NMAAIEETFVNTNSVTSLKLGYARGAIMSLIGRYDLDMREFKPNTIKKTVTGYGHAEKDQ 121 Query: 122 VQHMVRTLL-KLPANPQADAADALAIAIT 149 + HM++ LL A +D ADA+AIA T Sbjct: 122 ILHMIKLLLPGTAAITNSDEADAVAIAYT 150 >UniRef50_A1WZ63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Proteobacteria RepID=RUVC_HALHL Length = 167 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 2/137 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQF 59 M ILGIDPGSRVTGYG++ GR + G +R L RL I+ G+ E+I + Sbjct: 1 MTRILGIDPGSRVTGYGIVD-DGRPTRLVTEGTLRLPRQAGLAERLGRIFDGLAELIAEH 59 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P A+EQVF+ +NAD+ALKLG ARG A+ A V LPV EYA ++KQ + G G A+K Sbjct: 60 RPQEVALEQVFVHRNADTALKLGHARGAALTACVQAGLPVAEYAPARIKQAIAGSGRADK 119 Query: 120 SQVQHMVRTLLKLPANP 136 +QV +MVR LL+L +P Sbjct: 120 TQVGYMVRALLRLRTSP 136 >UniRef50_Q0BT56 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Alphaproteobacteria RepID=RUVC_GRABC Length = 178 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 8/172 (4%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG R TG+GVI G +L ++ G I T + +P+RL++++ +T ++ + Sbjct: 12 VRMLGIDPGLRFTGWGVIEATGNRLRHIADGVIATDSTESVPARLRVLHDTLTSLLVTYH 71 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+ ++ +N + LKLG ARGVA++A + +PV EY A+ VK VVG G A K Sbjct: 72 PDEAAVEETYVNRNGTATLKLGYARGVALLAPALRNVPVAEYGAKAVKLAVVGTGGATKD 131 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 QVQ MV+ LL +ADAADALA+AI H H SR ARG + Sbjct: 132 QVQMMVQRLLPGATLKRADAADALAVAICHAHHR-------ASRSAWARGAV 176 >UniRef50_Q5P9D7 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaplasma RepID=RUVC_ANAMM Length = 165 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 90/159 (56%), Gaps = 4/159 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +I+GIDPG TG+GV+ Q + L SG I T+ +L IY + +++ ++ Sbjct: 2 MIIGIDPGLEFTGWGVVSSTNSQSVCLLDSGVISTRGISRESEKLYKIYVSLLSVLSLYK 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 D +IE+VF+ N S++ L AR + ++ +++ + ++EY++ +K+ + G G A K Sbjct: 62 IDEASIEKVFINSNPRSSMSLCYARAASTISVMSRGIDIYEYSSTAIKKCITGNGMAPKE 121 Query: 121 QVQHMVRTLLKLPAN--PQADAADALAIAITHCHVSQNA 157 QV MVR+ L + + ++DA+A A+ H + ++N Sbjct: 122 QVSFMVRSSLGIKQDVEINNHSSDAIAAALCHVYNTRNR 160 >UniRef50_C1SHM8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHM8_9BACT Length = 163 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQ 60 AI++G+DPG TG G+++ ++ Y+ +RT D LP RL +I G+ + +++ Sbjct: 3 AIVMGVDPGLNCTGIGIVQVWPGKVEYVAHEVVRTDSKDPLPVRLGVICGGIRSALAEYK 62 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E VF + N SA+ LGQ RG I + ++ V E+ A Q+K+ VVG G A+K Sbjct: 63 PSCSAVEDVFYSVNVKSAMLLGQTRGAIIATLLAGDIEVREFTALQIKKAVVGYGKADKQ 122 Query: 121 QVQHMVRTLLKLP-ANPQADAADALAIAIT 149 QV+ MV LL N D DALA I Sbjct: 123 QVKKMVEVLLGRKMGNVPLDVTDALACGIC 152 >UniRef50_B1H0B2 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=RUVC_UNCTG Length = 190 Score = 165 bits (418), Expect = 6e-40, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 83/138 (60%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 IILGIDPG +TG+GV+ R +++ L GCI+T L RL+ I + +I +++ Sbjct: 2 IILGIDPGLSLTGWGVVEAFSRDKVNPLQYGCIKTMPSVPLIQRLQTINTKLQSVIDKYK 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ +IE++F K S +GQ RG I+ A ++P+FEY + VK + G GSA+K Sbjct: 62 PEVASIEELFFFKATKSIAAVGQTRGAIILTASLNKIPLFEYNPKSVKTALTGYGSADKY 121 Query: 121 QVQHMVRTLLKLPANPQA 138 Q+Q +V+T L+L P+ Sbjct: 122 QMQRIVKTFLRLKEIPKP 139 >UniRef50_B3DZD1 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZD1_METI4 Length = 169 Score = 164 bits (417), Expect = 9e-40, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 79/134 (58%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ILGIDP R TGYG+I G + G I T+ D +L+ IY + II ++ P+ Sbjct: 7 RILGIDPALRKTGYGIIESNGTSTRLIDFGVIVTEHADQARKLRSIYERLLSIIQEYSPE 66 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + A+E + +N +A+ +G ARGVA++ +ELPVFEY+ R++K G GSA K QV Sbjct: 67 HVAMESIIFVQNRKTAIDMGAARGVALLLFSLKELPVFEYSPRKIKMAATGKGSARKEQV 126 Query: 123 QHMVRTLLKLPANP 136 M+R LL + + P Sbjct: 127 SFMIRALLAMDSLP 140 >UniRef50_A4A9Q9 Crossover junction endodeoxyribonuclease RuvC n=5 Tax=Gammaproteobacteria RepID=A4A9Q9_9GAMM Length = 172 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 78/137 (56%), Positives = 101/137 (73%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MAIILGIDPGS+ TG+G+I + + SY+ SG IR LP RL++I V E++ Sbjct: 1 MAIILGIDPGSQKTGFGIISTLNGKNSYITSGVIRLPKGALPERLRIIAESVAELVELHG 60 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P ++EQVF+AK+AD+ALKLGQARG AIV V + L V EY+ARQ+KQ+VVG G+A+K+ Sbjct: 61 PTELSVEQVFLAKSADAALKLGQARGAAIVPCVLRGLEVSEYSARQIKQSVVGTGAADKA 120 Query: 121 QVQHMVRTLLKLPANPQ 137 QVQHMV+ LLKLP PQ Sbjct: 121 QVQHMVKALLKLPGAPQ 137 >UniRef50_C4XIK0 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Desulfovibrionales RepID=RUVC_DESMR Length = 169 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IILG+DPGSR TGYG++R+ L + +G +RT D PSRL +I+ V E+I + P Sbjct: 8 IILGLDPGSRATGYGLVRERSGVLELVDAGVVRTTSQPDFPSRLGVIFTAVAELIQRHGP 67 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E VF++KNA +ALKLGQARG A+ A L V Y +KQ++VG G AEKSQ Sbjct: 68 AEVSVENVFVSKNAATALKLGQARGAALAACAVAGLSVHSYEPTVIKQSLVGTGRAEKSQ 127 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 V MV +L DA DALA A+ H + + Sbjct: 128 VAFMVARVLACRETFAVDATDALAAAVCHLNQRR 161 >UniRef50_B2KDV8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDV8_ELUMP Length = 189 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQ 58 + +LGIDPG TG+ ++ + + G I + D LP RL+ I+ + ++ Sbjct: 6 LTTVLGIDPGLDRTGWAILTRDKNSNIRLTACGLIHSSKDSALPERLEYIFNEIGKLAEA 65 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 ++P++ A+E++F K A + + Q RGV ++AA + L + Y+ ++VK + G G+A Sbjct: 66 YKPNHVAMEEMFFLKRAITVSQTIQTRGVILLAAHLKGLNINSYSPKKVKSVICGSGTAG 125 Query: 119 KSQVQHMVRTLLKLPANPQA-DAADALAIAITHC 151 K+Q+Q MV+ LKL P+ D ADA+AI I H Sbjct: 126 KAQIQRMVQLTLKLTKKPEPDDVADAIAIGICHL 159 >UniRef50_A5ERK2 Crossover junction endodeoxyribonuclease ruvC n=61 Tax=Alphaproteobacteria RepID=RUVC_BRASB Length = 175 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+GIDPG R TG+GVI G +L Y+G G + D L +RL I+ G+ +++ FQ Sbjct: 10 VRIIGIDPGLRRTGWGVIESEGNRLIYVGCGSVEPPDDLPLANRLLAIHEGLAKVLNDFQ 69 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+EQ F+ K+ + LKLGQARG+A++A + V EYA QVK+TVVG G A+K Sbjct: 70 PLEAAVEQTFVNKDGVATLKLGQARGIAMLAPAMFGISVAEYAPNQVKKTVVGAGHADKG 129 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESRL 165 Q+ M++ LL P ADAADALAIAITH H Q A++M + L Sbjct: 130 QIAVMLKILLPKAEPPSADAADALAIAITHAHHRQGQALRMKVAGL 175 >UniRef50_A5KTE8 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=candidate division TM7 RepID=A5KTE8_9BACT Length = 158 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQP 61 I+GIDPG+ + G+GVI + + +G +RTK L RL IY + II +P Sbjct: 2 RIIGIDPGTGILGFGVIDAEQGTTNLVDAGVVRTKVHQPLDERLVEIYGAIQSIIADTRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE++F A+N +A+ + ARGVA++A +L + EY Q+KQT+ G G A K Q Sbjct: 62 TIMAIERLFFAQNVTTAMSVAHARGVAMLAGKQADLAIHEYTPLQIKQTMTGYGRATKKQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 +Q MVR L L P+ Sbjct: 122 IQEMVRLQLNLVEVPKP 138 >UniRef50_Q3SP12 Crossover junction endodeoxyribonuclease ruvC n=10 Tax=Alphaproteobacteria RepID=RUVC_NITWN Length = 172 Score = 162 bits (410), Expect = 5e-39, Method: Composition-based stats. Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 1/161 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+GV+ G +L ++G G + T+ L SRL I+AG+ ++ QF+ Sbjct: 6 IRILGIDPGLRRTGWGVLEIDGNRLMFVGCGSVETREHMALASRLLAIHAGLGAVLDQFR 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P AIEQ F+ K+ + LKLGQARGVA++A + V EYA QVK+TVVG G A+K+ Sbjct: 66 PSEAAIEQTFVNKDGVATLKLGQARGVAMLAPALFGIAVAEYAPNQVKKTVVGAGHADKA 125 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS 161 Q+Q M++ LL ADAADALAIAITH H ++A + Sbjct: 126 QIQAMLKILLPKADPKSADAADALAIAITHAHHRKSAALAA 166 >UniRef50_C6C066 Crossover junction endodeoxyribonuclease RuvC n=3 Tax=Desulfovibrionales RepID=C6C066_DESAD Length = 168 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 8 DPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPDYFAI 66 DPG+RVTGYG++R++ Q+S + +G IRT + SRL IY+ + E+I ++ PD AI Sbjct: 12 DPGTRVTGYGIVRELSGQVSLVDAGTIRTNTKKPMCSRLGEIYSRIAELIKEYSPDEAAI 71 Query: 67 EQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMV 126 E F+A N SALKLGQARG A+ A L V Y +VK +VG G A+KSQV MV Sbjct: 72 ENAFVASNPASALKLGQARGAAMAACAVSGLVVSGYEPTKVKSNLVGSGRADKSQVAFMV 131 Query: 127 RTLLKLPANPQ-ADAADALAIAITHCHVSQ 155 +L + D DAL IAI H + + Sbjct: 132 ERILGVKNTKWANDTTDALGIAICHLNERR 161 >UniRef50_Q1D2J4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Myxococcus xanthus DK 1622 RepID=RUVC_MYXXD Length = 191 Score = 161 bits (409), Expect = 7e-39, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 5/172 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LG+DPGSR G+GV+ + +L ++G G I+ L RL+ ++ +T + +++P Sbjct: 2 RVLGVDPGSRFMGFGVVEEKRGRLVHVGHGVIKGDPALPLSDRLRDLHGALTAALVKYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE-KS 120 A+E VF +NA SAL LG ARGVA++AA LPVFEYA +VK+ V G G A+ K Sbjct: 62 AAVAVEGVFTFRNARSALVLGHARGVALLAAAQAGLPVFEYAPAKVKKAV-GAGGADGKD 120 Query: 121 QVQHMVRTLLKLPANP--QADAADALAIAITHCHVSQNAMQMSESRLNLARG 170 V MVRT L+L A+ +ADA+DALA+A+ H + + A+ + + +G Sbjct: 121 AVARMVRTFLELDASVLERADASDALAVALCHLNHGRAAVPAASASGKKRKG 172 >UniRef50_B1LZP2 Crossover junction endodeoxyribonuclease ruvC n=84 Tax=Alphaproteobacteria RepID=RUVC_METRJ Length = 207 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+G+I G +L+Y G + + + L RL+ ++ G+ I+ + Sbjct: 5 VRILGIDPGLRRTGWGLITAQGTKLTYGDCGVVTSDGELPLALRLRELFEGIGRIVEAVR 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+ F+ K+A + LKLG AR +A++ LPVFEYA +K+TV G G AEK Sbjct: 65 PDEVAVEETFVNKDAQATLKLGHARAMALLVPALAGLPVFEYAPNLIKKTVAGSGHAEKV 124 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHC-HVSQNAMQMSESRLNLAR 169 Q+Q MVR LL ADAADALAIAITH H +A++ + R Sbjct: 125 QIQAMVRFLLPKAEFRVADAADALAIAITHASHRDAHALRQAHLPGGKRR 174 >UniRef50_O52751 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Cyanobacteria RepID=RUVC_ANASP Length = 163 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 9/144 (6%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-------QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTE 54 ILG+DPG + G+G I +++ L G I+T D ++ RL ++ + Sbjct: 4 RILGLDPGLAILGFGAITCTPGLTQLQSTKVNVLDFGVIKTSADIEIGQRLCTLFDDLHT 63 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 +I Q QPD AIE++F + S + + QARGV ++A LP E+ Q+K + G Sbjct: 64 VIDQLQPDVVAIEKLFFYR-MSSTIVVAQARGVVMLALAQHHLPYVEFTPAQIKLALTGY 122 Query: 115 GSAEKSQVQHMVRTLLKLPANPQA 138 G+A+KS+VQ V L L P+ Sbjct: 123 GNADKSEVQEAVARELDLAEIPRP 146 >UniRef50_C7LZJ0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZJ0_ACIFD Length = 164 Score = 159 bits (402), Expect = 4e-38, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQFQP 61 ILG+DPG GY VI G L +G+G + T SRL I G ++ F P Sbjct: 7 RILGVDPGLARLGYAVIEATGDTLRLVGAGLVTTAARACRASRLHEIAEGFESVLDDFDP 66 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 AIE++ +N SAL + + GV +A + + ++ + VK GSA K Q Sbjct: 67 TEAAIERLAFTRNVSSALPVSEVVGVVRLALWRRGVVAYDISPNTVKNAATSGGSAAKEQ 126 Query: 122 VQHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQ 155 VQ V LL L PQ D ADA+AIA T + Sbjct: 127 VQRTVVRLLGLDEPPQPPDVADAMAIAYTRLAQRR 161 >UniRef50_D0KY60 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY60_HALNC Length = 188 Score = 159 bits (402), Expect = 4e-38, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 1/168 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 ++GIDPGS G V+ + + + +RL IYA V +I P Sbjct: 5 RVMGIDPGSVTMGVAVLDFERGSATQIHLQSVSLKPHGSFTARLGAIYAEVDRLIDTHAP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D FAIEQ+FM ++ +S+LKL QARGVAI AAV L V EY VKQ VVG G A+K Q Sbjct: 65 DEFAIEQIFMYRSPESSLKLAQARGVAIAAAVGHGLTVHEYMPAVVKQAVVGTGRADKLQ 124 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLAR 169 VQHM++ LL L +P AD ADA A+A+ HC+ + +S + + + Sbjct: 125 VQHMIKRLLSLSESPPADGADAAAVALCHCYRRTSLAGISADEVGVEK 172 >UniRef50_Q10YI3 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Cyanobacteria RepID=RUVC_TRIEI Length = 163 Score = 158 bits (401), Expect = 6e-38, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 9/143 (6%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQ-------LSYLGSGCIRTKVD-DLPSRLKLIYAGVTEI 55 ILG+DPG V G+G+I+ + S + G I+T ++ RL IY + I Sbjct: 5 ILGLDPGLAVLGFGLIKCIYNSKTEKIDSTSLVDFGVIKTTKKQEMGQRLVTIYEDLHTI 64 Query: 56 ITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 + F+PD A E++F + ++ L + QARG+ I+A E+P+ E+ Q+KQ V G G Sbjct: 65 LNNFKPDLAATEKLFFYRMGNTIL-VAQARGILILALAQNEIPLIEFTPAQIKQAVTGYG 123 Query: 116 SAEKSQVQHMVRTLLKLPANPQA 138 +A+K VQ V L L P+ Sbjct: 124 NADKYDVQQAVARELNLEEIPKP 146 >UniRef50_B2V8P7 Crossover junction endodeoxyribonuclease n=2 Tax=Sulfurihydrogenibium RepID=B2V8P7_SULSY Length = 154 Score = 158 bits (400), Expect = 8e-38, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IL IDP S TGY + + + L G I K + P LK +Y + E I ++ Sbjct: 1 MERILSIDPSSSKTGYVIAKLEKDEALSLDYGLIELKKEKQP--LKKLYQALEEKILKYT 58 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 + +E F + NA + +KLG+ RGV ++ A N + V E++ +VK ++ G G + K Sbjct: 59 IEKIILETPFYSINAQTLIKLGEVRGVILLLAQNYNIKVEEFSPAEVKISITGYGRSGKE 118 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 +V MV + L D ADA A I HC++ Sbjct: 119 EVLEMVNKIFNLN-IKDYDIADAFA--ILHCYMLN 150 >UniRef50_Q2JP15 Crossover junction endodeoxyribonuclease ruvC n=12 Tax=Cyanobacteria RepID=RUVC_SYNJB Length = 168 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQP 61 ILG+DPG G+G I L + G I T +P RL+ ++ +++++ Q +P Sbjct: 14 RILGLDPGLGTMGFGCILAGSAGLKPVDYGVISTPSQHSMPERLQTLHEDLSQLLRQLRP 73 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E++F K ++ + + QARGV ++ L E+ QVKQ++ G G A+K Sbjct: 74 HQVGLEKLFFYKMGNT-IAIAQARGVILLTLAQHHLLPVEFTPAQVKQSLTGYGRADKQA 132 Query: 122 VQHMVRTLLKLPANPQA 138 VQ V L LP+ P+ Sbjct: 133 VQAAVARELNLPSLPRP 149 >UniRef50_A1T882 Crossover junction endodeoxyribonuclease ruvC n=46 Tax=Actinomycetales RepID=RUVC_MYCVP Length = 194 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 ++G+DPG G VI GRQ+ L +RT L RL I V + + Sbjct: 2 RVMGVDPGLTRCGLSVIESGKGRQVIALDVDVVRTPAGHPLAHRLLAISDAVDHWLDTHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD AIE+VF +NA++A+ QA GV +AA +++ V + +VK V G G A+K+ Sbjct: 62 PDVIAIERVFSNQNANTAMGTAQAGGVIALAAARRDIDVHFHTPSEVKAAVTGNGRADKA 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 QV MV +L L P DAADALA+AI HC + + Sbjct: 122 QVTEMVTRILALQQKPTPADAADALALAICHCWRAPMLGR 161 >UniRef50_Q2GCH7 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Neorickettsia RepID=RUVC_NEOSM Length = 166 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%) Query: 1 MAII-LGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIIT 57 M+ + LG+DPG TG+ V+ G + Y+ SG ++T L +RL+ I+ G++++I Sbjct: 1 MSYVALGVDPGLLRTGWAVVEYDGLCNVRYIDSGIVKTASQGSLSARLEKIHRGISDVIE 60 Query: 58 QFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 + P +E+VF+ N S+L L RG I+ + L + E+A +K+ + G G A Sbjct: 61 KVNPSVAVLEKVFVNNNPYSSLNLAYCRGALILTLALKGLFIVEFAPSVLKKRITGNGRA 120 Query: 118 EKSQVQHMVRTLLKLPA--NPQADAADALAIA 147 K+QV++MV LL L + +D DALA+A Sbjct: 121 TKAQVKYMVEQLLGLDPCLSKYSDLYDALALA 152 >UniRef50_UPI0001C17184 Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Nostocaceae RepID=UPI0001C17184 Length = 192 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 10/147 (6%) Query: 1 MAI-ILGIDPGSRVTGYGVIRQVGRQLSY-------LGSGCIRTKVD-DLPSRLKLIYAG 51 M ILG+DPG + G+G I R + G IRT D ++ RL ++ Sbjct: 27 MTRQILGLDPGLAIVGFGAISLEQRSAKLSDTTITMVDFGVIRTPSDMEITQRLSTLFDD 86 Query: 52 VTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTV 111 + ++ + QPD AIE++F + A++ L + QARGV ++ + LP E+A Q+KQ + Sbjct: 87 LHTLLDELQPDVVAIERLFFYRMANTIL-VAQARGVIMLVLGQRRLPYLEFAPPQIKQAL 145 Query: 112 VGIGSAEKSQVQHMVRTLLKLPANPQA 138 G AEK +VQ V L L PQ Sbjct: 146 TSYGKAEKIEVQEAVMRELDLEEIPQP 172 >UniRef50_D2UF38 Putative holliday junction resolvasome, endonuclease subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2UF38_XANAL Length = 207 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 80/164 (48%), Positives = 106/164 (64%), Gaps = 2/164 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQF 59 ILGIDPGS+ TG G+I + ++ +R D P RLK + G+ +I ++ Sbjct: 36 VRILGIDPGSQRTGVGIIDVDAAGRARHVYHAPLRLLGEGDFPQRLKRLLHGLDALIEEY 95 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +P AIE+VFM K+AD+ALKLG ARG AI A V ++LPV EYAA+++K +VG G+AEK Sbjct: 96 RPQEVAIERVFMGKSADAALKLGHARGAAICAVVLRDLPVHEYAAKEIKLALVGKGAAEK 155 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSES 163 QVQHMV +L L QADAADALA+AITH HV A ++ Sbjct: 156 QQVQHMVGLMLSLSGKLQADAADALAVAITHAHVRATAQRLGVG 199 >UniRef50_A7H905 Crossover junction endodeoxyribonuclease ruvC n=4 Tax=Anaeromyxobacter RepID=RUVC_ANADF Length = 206 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 2/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I LGIDPGSR GYGV+ + G +L + SG + + + + RL I G+ E+I + P Sbjct: 2 IALGIDPGSRRCGYGVVAREGTRLVVVASGVLAPRAERPVAERLARILDGLAEVIRRAGP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +IEQVF + SAL LGQARGVA+ AA LPVFEYA +VK G G A K Q Sbjct: 62 AECSIEQVFSGASVRSALVLGQARGVALAAAAQAGLPVFEYAPSEVKLAFTGSGRATKDQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESR 164 + LL +D ADALA+A+ H + + R Sbjct: 122 MIRTAHMLLG-ATPGLSDEADALALAVCHLARRAGRLAVPAVR 163 >UniRef50_B9KB70 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KB70_THENN Length = 170 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ILG+DPG + G G+I G ++S++ G I T D RLK I+ I+ +F P Sbjct: 7 RILGVDPGYGIVGIGIIEISGNRISHVFHGAIETSKDLPRGKRLKQIHEEFLRILEKFSP 66 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E +F KN +A+ +G+ARGV ++A + +PVFEYA +VK ++ G G A K Q Sbjct: 67 DECAMETLFFVKNVTTAIGVGEARGVILLALEEKGVPVFEYAPNEVKISLTGYGRASKRQ 126 Query: 122 VQHMVRTLLKLPANPQA 138 VQ V+ L L P+ Sbjct: 127 VQENVKRFLGLSEIPRP 143 >UniRef50_D1NBU8 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBU8_9BACT Length = 169 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQ 60 +ILGIDP R TGYGVIR L L G I + L+ + G+ E++ F Sbjct: 2 VILGIDPAIRTTGYGVIRTDSLSHLEILDCGVIANSPKLPHSECLRRLAGGIRELVQAFH 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PDY +IE+ FM +NA +A+ LG ARG + A V +P + Y+ + K+ VG G A K Sbjct: 62 PDYASIEEPFMGRNASTAIILGMARGGILTALVESGVPTYAYSPKTAKRAAVGTGMATKE 121 Query: 121 QVQHMVRTLLKLP-ANPQADAADALAIAITHCHVSQNAM 158 Q+ ++ L + D+ DALA+AI H ++ Sbjct: 122 QIAILLAAELGIEIERIPLDSTDALALAICHAQLAMRPT 160 >UniRef50_Q72JP3 Crossover junction endodeoxyribonuclease ruvC n=5 Tax=Thermaceae RepID=RUVC_THET2 Length = 166 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGR---QLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQ 58 ++ GIDPG G GV+ G+ + L ++T + R+ I+A V E++ + Sbjct: 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHR 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 F+P+ A+E+ F + + A K+G A G +VAA +PV+ Y QVKQ + G G A Sbjct: 62 FRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAA 121 Query: 119 KSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 K +V MVR +L L P+ ADALAIA+TH ++ Sbjct: 122 KEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARMGTA 163 >UniRef50_A3ZTA0 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTA0_9PLAN Length = 147 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 3/146 (2%) Query: 19 IRQVGRQLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKN-AD 76 I R++ + +G +R K LP+R++ IY GV ++IT QP AIEQ++ Sbjct: 2 IEVQNRRIRIIEAGVVRGKTRGSLPARVREIYDGVRDVITTLQPQTMAIEQLYSHYERPK 61 Query: 77 SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANP 136 +A+ +G ARGV +AA +P+ Y+A Q+K+ + G G A K+QVQ V+ L LP P Sbjct: 62 TAIIMGHARGVLCLAAEQAGMPIHHYSATQIKKLLTGSGRAPKNQVQLSVQRELSLPEIP 121 Query: 137 Q-ADAADALAIAITHCHVSQNAMQMS 161 + D ADALA+A+ H +++ Q++ Sbjct: 122 EPPDVADALAVALCHYYLASMPTQVA 147 >UniRef50_B2UP63 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Verrucomicrobia RepID=RUVC_AKKM8 Length = 167 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 IL IDP R TGY V+ R+ L G + L I + +I ++ P Sbjct: 2 RILAIDPAIRNTGYAVVEGDYRRARALDYGTLSIPRSVSQSGCLLAIKQHLGNLIDKWNP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E++ ++ +A+ +G A+ ++AA L + EY+ + VK +VVG G+A+K+Q Sbjct: 62 DEMAVERIIYVQSHQTAITMGAAKAAVVIAAAEAGLRIMEYSPKSVKLSVVGRGAAQKTQ 121 Query: 122 VQHMVRTLLKLPANPQADAADALAIAITHCHVS 154 V MVR LL+L P++DAADALAI +TH + Sbjct: 122 VAFMVRALLELRETPESDAADALAIGLTHLFSA 154 >UniRef50_B8FBT6 Crossover junction endodeoxyribonuclease n=2 Tax=Desulfobacteraceae RepID=B8FBT6_DESAA Length = 168 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 +LGIDPG TG ++ Q+ G I T + L RL IY + E+ +PD Sbjct: 3 VLGIDPGLAATGLALVNGTSTQVFGYSFGTITTPPESPLTDRLIHIYDRIREVAEAERPD 62 Query: 63 YFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E +F + K S + LG+ G +VA + +PV E A R+VK+ + G G+A+K+Q Sbjct: 63 LMVVEDIFSLGKYPKSGITLGKVTGAILVAGRHGRIPVREVAVREVKKILTGNGAADKNQ 122 Query: 122 VQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSESRLN 166 ++ VR L + A+DA+A+A+ + + ++ R++ Sbjct: 123 LERAVRQRLGREEAIRPSHASDAMALALIGLYRGDHYLRNGLDRIS 168 >UniRef50_C1F130 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RUVC_ACIC5 Length = 171 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 8/144 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-------QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTE 54 I GID GS +TGYG++ L + G IR L RL ++ + Sbjct: 2 RIFGIDCGSEITGYGIVECPDGTPRSGQPDLRLIAFGGIRPAKKLTLAERLAFVHRELLT 61 Query: 55 IITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 + QPD A+E+VF + NA SALKLG RGVA++AA LP+ EYA +K TV G Sbjct: 62 QLAAHQPDLVAVEEVFYSVNAKSALKLGHVRGVALLAAATAGLPIAEYAPLTIKSTVTGY 121 Query: 115 GSAEKSQVQHMVRTLLKLPANPQA 138 G A+K QVQ MV LL +P P+ Sbjct: 122 GLAQKEQVQFMVARLLHMPEPPEP 145 >UniRef50_Q55506 Crossover junction endodeoxyribonuclease ruvC n=13 Tax=Cyanobacteria RepID=RUVC_SYNY3 Length = 167 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 5 LGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LGIDPG + G+ ++ + G I T + P RL I + ++ +F P Sbjct: 11 LGIDPGLAIIGWAILDGQPDLSAHLVDYGIIETSKNLSTPERLVEIEQDIHVLLEEFSPQ 70 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQEL--PVFEYAARQVKQTVVGIGSAEKS 120 A+E F ++ +A + QA GV + ++ PVF + + + +G G A K+ Sbjct: 71 AIAMEMPFFSRQIKAAGGVMQALGVINLVIYREKSIQPVFLHQSSW--KCHLGNGKANKA 128 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQN 156 +V MV+ L P D+ DA+AIA+ + +N Sbjct: 129 EVAAMVQNFFGLEDLPIDDSVDAIAIALAGLNGVRN 164 >UniRef50_D0LZE7 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZE7_HALO1 Length = 168 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 4/164 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVG---RQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQ 58 ILG+DPGSR+ GYGVI +Y+ G + T+ + RL I +T+++T+ Sbjct: 2 RILGVDPGSRMCGYGVIEVGAQGPGACAYVECGVLSATRGAPMEQRLGEIACWLTDVVTE 61 Query: 59 FQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +P A+E VF +N SAL L QARG + A LPV+ YA VK+TV G G A Sbjct: 62 LRPLVVAVEDVFTHQNVRSALALAQARGTVLAVAGMAGLPVYSYAPAVVKKTVTGRGRAP 121 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSE 162 K QV MV+ L+ L P+ADAADALA+AITH SE Sbjct: 122 KEQVALMVQALVGLRRVPEADAADALAVAITHAQRGPTIALGSE 165 >UniRef50_Q83GK1 Crossover junction endodeoxyribonuclease n=2 Tax=Tropheryma whipplei RepID=Q83GK1_TROWT Length = 183 Score = 147 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 4/169 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 I+ +DPG G V+ G L L T +R+ I + ++ +F Sbjct: 2 RIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIGDSLLSMLEEFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD FA+E+VF N + + GVA + + ++K ++ G G+A+K Sbjct: 62 PDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHIAFHTPSEIKASICGYGNAKKD 121 Query: 121 QVQHMV-RTLLKLPANPQADAADALAIAITHCHVSQ-NAMQMSESRLNL 167 Q++ MV R L + DA+DALA+A+ + +E+RL Sbjct: 122 QIRSMVNRVFLSQDIPLRHDASDALALAVCCARRYALHNEHFTEARLRW 170 >UniRef50_B9XLI6 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=bacterium Ellin514 RepID=B9XLI6_9BACT Length = 193 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR-LKLIYAGVTEIITQFQPD 62 ILG+DP R TG+G+IR L G I SR L I + ++I Q QP Sbjct: 31 ILGVDPSLRGTGFGIIRLAKPYPQTLVHGTISCPATWEHSRCLVKIAQTLRDVIKQHQPT 90 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE +F A+N +AL +G+ARG A+ L +FE A R+VKQ +VG G+A+K V Sbjct: 91 VCAIEGLFFAQNLQTALIMGEARGAAMATIGEAGLEIFEIAPRKVKQAIVGYGAAQKMAV 150 Query: 123 QHMVRTLLKLPANPQA 138 MV+ +L L P+ Sbjct: 151 AKMVQRMLHLSELPEP 166 >UniRef50_Q1J1K4 Crossover junction endodeoxyribonuclease ruvC n=3 Tax=Deinococcus RepID=RUVC_DEIGD Length = 168 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQP 61 I+LG+DPG G G++ R+ +L C+ T+ L P RL+ ++ V ++ +++P Sbjct: 2 IVLGVDPGLANLGLGLVEGDVRKARHLYHVCLTTESAWLMPRRLQYLHEEVARLLAEYRP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D AIE + + AD A K+GQA GV +A +P+ Y QVK+++VG G A+K Q Sbjct: 62 DAVAIEDQILRRQADVAFKVGQAFGVVQLACAQAGVPIHAYGPMQVKRSLVGTGRADKEQ 121 Query: 122 VQHMVRTLLKLPANPQA 138 + +MV+ L + Sbjct: 122 IIYMVKATLGIRELFNN 138 >UniRef50_B0REB8 Crossover junction endodeoxyribonuclease ruvC n=23 Tax=Actinobacteridae RepID=RUVC_CLAMS Length = 204 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG G GV+ + + +RT +L RL + G+ E++ + + Sbjct: 2 RILGIDPGLTRCGVGVVDVYADRSARLVDVQVVRTSPTAELHHRLLAVGDGIEELVDRHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF N + + + Q GVA+V A + L V + +VK V G G A+K Sbjct: 62 PSVVAVERVFAQDNLSTVMGVAQITGVALVGAARRGLDVALHTPSEVKAAVTGYGQADKR 121 Query: 121 QVQHMVRTLLKLPANPQA 138 QV MV +L L P Sbjct: 122 QVATMVARILGLDELPTP 139 >UniRef50_Q04V33 Crossover junction endoribonuclease n=4 Tax=Leptospira RepID=Q04V33_LEPBJ Length = 166 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+GIDPGS GY V+ + ++ L G + P+ L ++ G+TEI+ +F+P Sbjct: 2 RIIGIDPGSHRAGYAVLEKTASKIRILAYGTVEVPSGTPSPNNLLVLRKGLTEILKEFKP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q Sbjct: 62 SIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIQILEPTVSQIKKGTTGSGTADKKQ 121 Query: 122 V-QHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRL 172 + Q + L D+ DA+A A + MS S L AR ++ Sbjct: 122 IRQALKLLLDIDLLKGHDDSWDAVAAAYVG-------LSMSSSPLFAARFKV 166 >UniRef50_A4AJX2 Holliday junction resolvase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJX2_9ACTN Length = 201 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ++GIDPG G GV+ R+ + + G +RT + L RL+ I G+ +I ++ Sbjct: 4 RVIGIDPGLTRCGIGVVDVAADRRATLVHVGVVRTPPEMALEERLRHIGEGIDAVIAEYA 63 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P A+E+VF N + + QA GVA+ A + + V + +VK + G G AEK Sbjct: 64 PHQLALERVFAQLNVSTVMGTAQASGVAMYVAAQRGIAVTMHTPTEVKLAITGYGGAEKK 123 Query: 121 QVQHMVRTLLKLPA 134 QV MV +L L Sbjct: 124 QVGAMVARVLGLAE 137 >UniRef50_A4FBA6 Crossover junction endodeoxyribonuclease ruvC n=22 Tax=Actinomycetales RepID=RUVC_SACEN Length = 199 Score = 145 bits (366), Expect = 7e-34, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ GR ++ +G G RT D +L +RL + V E + + Sbjct: 2 RVLGVDPGLTRCGIGVVDGGRGRTVTCVGVGVARTPADQELSARLLGVAEAVDEWLDTHR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ AIE+VF N + + Q G+ +AA + LPV + +VK + G G A+K Sbjct: 62 PEVVAIERVFSQHNVRTVMGTAQVSGIVALAAARRGLPVAFHTPSEVKAAISGSGRADKR 121 Query: 121 QVQHMVRTLLKLPA 134 QV MV +L L Sbjct: 122 QVTTMVTKILGLAE 135 >UniRef50_C7MCB8 Holliday junction endonuclease RuvC n=5 Tax=Actinobacteridae RepID=C7MCB8_BRAFD Length = 197 Score = 144 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ GR+ + +G +R++ D L RL I G+ + +F Sbjct: 5 RVLGVDPGLTRCGIGVVDALGGRRARLVHAGVLRSESDAPLDQRLLTIARGLRAALEEFG 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E+VF N + + Q G+A++ A + +P + +VK V G G A+K Sbjct: 65 PDAVAVERVFSQNNISTVMGTAQVSGIALLEAAERGIPAAMHTPSEVKAAVTGSGRADKK 124 Query: 121 QVQHMVRTLLKL 132 Q+Q M+ LL L Sbjct: 125 QIQTMLVKLLGL 136 >UniRef50_C1TMQ2 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMQ2_9BACT Length = 151 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 14 TGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMA 72 G+GV+ ++G + GC+ T D +P RL +Y G+ E I P + A+E+++ Sbjct: 1 MGFGVVEKIGSKYRACSFGCLETPSDMSVPQRLDELYRGLREQINGCSPHFMAVEKLYFG 60 Query: 73 KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL 132 +N +A + QARGVA++ +L V E + K TV G G AEKSQ+Q MV+ +L L Sbjct: 61 RNTTTAENVWQARGVALLVGAQNDLFVLEPKPSEAKITVCGDGRAEKSQIQRMVQVILSL 120 Query: 133 PANPQA 138 P+ Sbjct: 121 KEIPRP 126 >UniRef50_C7NI47 Holliday junction endonuclease RuvC n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI47_KYTSD Length = 208 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 3 IILGIDPGSRVTGYGVIRQV-GRQLSYLGSGCIRTKVDDLPS-RLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ G L + RT D LP RL + + + I + Sbjct: 2 RVLGVDPGLTRCGLGVVEGRRGGSLRMVAVDVARTSADTLPEQRLLSVSRRIEDWIETYD 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD A+E++F + + + QA GVA+VAA + V ++ +VK V G G A K Sbjct: 62 PDAVAVERIFARSDVSTIMGTVQASGVALVAAARAGIEVGQHTPSEVKAAVCGNGRAGKE 121 Query: 121 QVQHMVRTLLKLP 133 QV MV +L L Sbjct: 122 QVTSMVVRILSLS 134 >UniRef50_Q0C5W4 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RUVC_HYPNA Length = 167 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 1/131 (0%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 ILGIDPG R TG+GVI Q G +L ++ G I D + RL I+ V E+ Sbjct: 5 IRILGIDPGLRHTGWGVIEQSGARLVHIAHGVIDPPTDLSMAERLGHIFEAVGELARHHA 64 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P +E+ + N SALKLGQARG A+ A + V E+A RQ+K +VVG G+A+K Sbjct: 65 PHAAGVEETLVNANPRSALKLGQARGAAMAALAMAGVSVAEFAPRQIKLSVVGTGTADKD 124 Query: 121 QVQHMVRTLLK 131 QV+ MV+ LL Sbjct: 125 QVKFMVQRLLP 135 >UniRef50_Q8F836 Holliday junction resolvasome endonuclease subunit n=2 Tax=Leptospira interrogans RepID=Q8F836_LEPIN Length = 176 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 I+GIDPGS GY V+ + ++ L G + P L ++ G+ EI+ +F P Sbjct: 14 RIIGIDPGSHRAGYAVLEKNASKIKILNYGTVEVPSGTPSPDNLLMLRKGLREILEEFNP 73 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 ++E++F AKN +A ++ ++RGV +V + + E Q+K+ G G+A+K Q Sbjct: 74 SIASVEEMFFAKNKKTASRVFESRGVLLVTLAEMNIRILEPTVSQIKKGTTGSGTADKKQ 133 Query: 122 V-QHMVRTLLKLPANPQADAADALAIAITH 150 + Q + L D+ DA+A A Sbjct: 134 IHQALKLLLNVELLKGHDDSWDAIAAAYVG 163 >UniRef50_B5Y8Y8 Crossover junction endodeoxyribonuclease RuvC (Hollidayjunction nuclease ruvC) (Holliday junction resolvase ruvC) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8Y8_COPPD Length = 159 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 3/160 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 ++ G+DPGS G ++ R ++L C+ R I V + F P+ Sbjct: 2 VVFGVDPGSTRVGLALLDDESR--NWLHVQCLELTGLPEHLRYTTIERYVGALCDVFNPE 59 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 AIE++ KN ++ L++ + RGV + A + + VFEY +VK G G EK+ + Sbjct: 60 EMAIEKLIWGKNRNNLLQISECRGVVKLVAYKRAIKVFEYFPTEVKSFTTGYGHEEKAGI 119 Query: 123 QHMVRTLLKLPANPQ-ADAADALAIAITHCHVSQNAMQMS 161 ++ P DA+DA+AIA H + N S Sbjct: 120 VRTLQAETGFDLLPLFDDASDAMAIAWIHVLMRNNRAVES 159 >UniRef50_A6GES0 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES0_9DELT Length = 190 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 11/165 (6%) Query: 2 AIILGIDPGSRVTGYGVIRQVGR----------QLSYLGSGCIRTKV-DDLPSRLKLIYA 50 ILGIDPG+RV GY ++ R + Y+ G +R + D++ RL I + Sbjct: 4 TRILGIDPGTRVVGYALVEVPTRSKSSAGPGPARFDYVECGVLRARARDEMHVRLVEIAS 63 Query: 51 GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQT 110 G+ E++ +FQP AIE+ F NA SAL L +ARG + A+ L V EYA +K+ Sbjct: 64 GLRELLAEFQPHELAIERAFHGLNAASALTLAEARGAFKLIALEHGLSVAEYAPAMIKRA 123 Query: 111 VVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 V G G A K++VQ V+ L +L PQADAADALA AI H + Sbjct: 124 VTGRGRATKAEVQARVQLLCRLAKEPQADAADALATAICHVQARR 168 >UniRef50_D2NT02 Holliday junction resolvasome, endonuclease subunit n=2 Tax=Rothia mucilaginosa RepID=D2NT02_9MICC Length = 228 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQF 59 I+G+DPG G+ ++ R+ ++ G T L R+ I+ + + + Sbjct: 27 TRIMGVDPGLTRCGFSMLDMTADRKAHFVNVGVAGTDPARTLDQRILWIFNAASHWLDTY 86 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +PD AIE++F + ++ + A G I AA + +PVF + +VK V G G A+K Sbjct: 87 RPDALAIERIFAQEQVNTVIGTAHASGAVISAAAMRGVPVFFHTPSEVKAAVTGSGRADK 146 Query: 120 SQVQHMVRTLLKLPANPQA 138 + V MV +L L A P+ Sbjct: 147 ASVGRMVTRILGLNAMPKP 165 >UniRef50_B1W3G2 Crossover junction endodeoxyribonuclease ruvC n=32 Tax=Actinomycetales RepID=RUVC_STRGG Length = 204 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 3 IILGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG G GV+ V R L+ +G G +RT D +L RL + G+ + + + Sbjct: 2 RVLGIDPGLTRCGVGVVEGVAGRPLTMIGVGVVRTSSDAELGDRLVAVERGIEQWLDEHS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P Y A+E+VF N + + QA VA++ A + +PV + +VK V G G A+K+ Sbjct: 62 PGYVAVERVFAQHNVRTVMGTAQASAVAMLCAARRGIPVALHTPSEVKAAVTGSGRADKA 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHV--SQNAMQMSESRLNLAR 169 QV MV LL+L A P+ DAADALA+AI H +QN +Q + + + Sbjct: 122 QVGAMVTRLLRLDAPPKPADAADALALAICHIWRAPAQNRLQQAVAAHRTSG 173 >UniRef50_C2KQ22 Crossover junction endodeoxyribonuclease n=3 Tax=Actinomycetaceae RepID=C2KQ22_9ACTO Length = 209 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 2/138 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ-LSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDPG G GV+ + S + IR++ + RL I G+ IT+F Sbjct: 2 RVLGIDPGITRCGVGVVDIDVSRVASLVYVAVIRSEPNLATQFRLLKISEGIAATITRFS 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ A+E+ F +N S QA GVA+ A LPV + +VK V G G+A K+ Sbjct: 62 PEIVALERPFAKENRQSVTTTMQAMGVAMAEAGRAGLPVALHTPSEVKAAVSGNGAATKA 121 Query: 121 QVQHMVRTLLKLPANPQA 138 QV+ M+ +L+L P+ Sbjct: 122 QVEAMIARILRLDKPPKP 139 >UniRef50_A6DK96 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK96_9BACT Length = 151 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 22 VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALK 80 ++ + G ++ K LK ++ +T++I ++PD+ +IE F +K A +A+ Sbjct: 5 ENGSMNAIDCGVVKNKAKLSQLDCLKRLHVAITQLIELYKPDHISIEGTFYSKFAKTAMI 64 Query: 81 LGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLP-ANPQAD 139 LG ARG + A +LPV+EY+ ++ KQ + G G A K QV M+ +L+ + D Sbjct: 65 LGMARGSVLSALAGTDLPVWEYSPKRAKQAITGSGDASKEQVAFMIAGILQADVSQINDD 124 Query: 140 AADALAIAITHCHVSQNAMQM 160 A DALA+A+ H + Sbjct: 125 ATDALALAVCHGQAILSPTSG 145 >UniRef50_C0QKP6 RuvC n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKP6_DESAH Length = 164 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD-LPSRLKLIYAGVTEIITQF 59 M ++G+DPG TG GVI G ++ G I T DD SRL I+ V + + Q Sbjct: 4 MVKVIGLDPGLAGTGIGVIEGRGTDIADYSFGSISTHKDDPTHSRLNTIFTRVCDFLCQE 63 Query: 60 QPDYFAIEQVF-MAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 +PD IE VF + K S + LG+ GV +VAA V E + R+ K+ V G GSA+ Sbjct: 64 KPDLVVIEDVFSLEKYPGSGIMLGKVSGVLLVAAFKAGARVEELSVREAKRVVTGSGSAD 123 Query: 119 KSQVQHMVRTLLKLPANPQA 138 K+QV+ VR +L P + Sbjct: 124 KNQVEKSVRNILNHPHPIRP 143 >UniRef50_B1ZSD5 Crossover junction endodeoxyribonuclease n=3 Tax=Verrucomicrobia RepID=B1ZSD5_OPITP Length = 200 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Query: 3 IILGIDPGSRVTGYGVIR-QVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 +LGIDP R TG +I GR L +R + L I+ V + + Sbjct: 45 RVLGIDPSLRGTGLALIEFAPGRAPVLLRCQTVRVSARLPMAQALAEIHRAVLAFLDGTE 104 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 + A+EQ +N +A LG ARG A+ A Q PVFEYA +VKQ VVG G A K Sbjct: 105 VRHVALEQTIFVQNFQTAQILGAARGAAMAVAALQGRPVFEYAPLRVKQAVVGAGRASKE 164 Query: 121 QVQHMVRTLLKLPANPQADAADALAIAITHCHVSQ 155 Q+ V LL +D ADA +A+ H + Sbjct: 165 QMARTVMALLGHGRPLASDEADAAGVALCHAFTWR 199 >UniRef50_A0LUK7 Crossover junction endodeoxyribonuclease ruvC n=6 Tax=Actinomycetales RepID=RUVC_ACIC1 Length = 178 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 1/137 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 ++G+DPG G GV+ +G + T D +L RL + G+ + + + P Sbjct: 13 RVMGVDPGLTRCGIGVVDGYPGLARLVGVDVLHTPADAELGDRLAALEDGLVQWLDRAAP 72 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 D A+E+VF N + + QA VA++ A + +PV + +VK V G G A K Q Sbjct: 73 DVVAVERVFSQHNVRTVMGTAQAGAVALLVAARRGVPVVWHTPSEVKAAVTGQGRAGKDQ 132 Query: 122 VQHMVRTLLKLPANPQA 138 V MVR LL+ P Sbjct: 133 VAFMVRRLLRAPGLAAP 149 >UniRef50_Q2JD96 Crossover junction endodeoxyribonuclease ruvC n=2 Tax=Actinomycetales RepID=RUVC_FRASC Length = 172 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG G GV+ + + G +RT ++ RL + G+ + + + Sbjct: 2 RVLGVDPGLTRCGLGVVDGGLGIRAHLVEVGVVRTPATAEVAERLCAVSDGIDAWLDRTR 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 P+ A+E+VF N + + QA VAIV A + LPV Y +VK V G G A+K+ Sbjct: 62 PEAVAVEKVFSQANMRTVMGTAQAGAVAIVLAARRGLPVGLYTPSEVKAAVTGSGRADKA 121 Query: 121 QVQHMVRTLLKLPA 134 QV M+ LL L Sbjct: 122 QVSFMITRLLGLTE 135 >UniRef50_B3DRX8 Crossover junction endodeoxyribonuclease ruvC n=8 Tax=Bifidobacteriaceae RepID=RUVC_BIFLD Length = 194 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 3 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQ 60 IILG+DPG G GVI R+LS++ +R+ D RL IY G++E + +F Sbjct: 2 IILGVDPGLTRCGVGVIEAGEHRRLSFIHVDVVRSSPDITQDLRLLAIYNGLSEKMDRFA 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 PD +IE+VF N ++ L QA G+A++AA + +PV + + K + G G A+K Sbjct: 62 PDAVSIERVFAQSNRNTVLGTAQAAGLAMLAAAQRNIPVALHTPTEAKLAITGNGQAQKI 121 Query: 121 QVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQMSE 162 QV+ MV +L L P DAADALA+AI H A+Q E Sbjct: 122 QVERMVTRILNLTKMPTPADAADALALAICHALRPAGALQGGE 164 >UniRef50_C0VVS7 Crossover junction endodeoxyribonuclease n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VVS7_9CORY Length = 175 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 41 LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 + RLK +Y +T+ I +++PD A+E++F + L A GV I+AA L V Sbjct: 1 MGDRLKELYEAITDWIAEYKPDVVAMERLFERGEVSTVLHTAHAVGVLILAASQANLDVH 60 Query: 101 EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHCHVSQNAMQ 159 EY QVK+ + G G A+K Q+ MV +L L P+ DAADALAIAITHC + ++ Sbjct: 61 EYTPSQVKKAITGNGRADKKQMTAMVTRILGLENPPKPADAADALAIAITHCWRAPQILR 120 Query: 160 MSESRLNLAR 169 +++ L + Sbjct: 121 EEKAKEQLRK 130 >UniRef50_A9VVH9 Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VVH9_BACWK Length = 166 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 6/157 (3%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRT-KVDDLPSRLKLIYAGVTEIITQFQP 61 LG+D G +I V +L + I+T RL I + I+ ++QP Sbjct: 5 RFLGLDMSLASAGIAIIDIVDGELRIVHKQRIKTNPKQRHGERLHKIATELKSILIEYQP 64 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 I + ++ A + L + GV+ + ++ + E + +K + G G A+K + Sbjct: 65 FDTIIREQGFSRFAKTTQALFKVVGVSDLVL--RDYAIVEISPTTIKLVMTGDGKADKKE 122 Query: 122 VQHMVRTLLKLPAN---PQADAADALAIAITHCHVSQ 155 V+ VR +++L + D +DA AI +TH + Sbjct: 123 VEKAVRKIMRLDDDYIFISDDESDACAIILTHLIQNN 159 >UniRef50_B7DTU4 Holliday junction resolvasome endonuclease subunit-like protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTU4_9BACL Length = 210 Score = 115 bits (289), Expect = 6e-25, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIR-TKVDDLPSRLKLIYAGVTEIITQFQP 61 ILGID G+R G+ V+ G + +LG G I T D L + + ++ V +I ++P Sbjct: 2 RILGIDHGTRYAGWAVLDIKGDKHEWLGYGLITLTDEDTLDATMGALHTSVENLIQNYEP 61 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E+ ++ L + A +AAV + +P+ + +++K G G AEK Sbjct: 62 TIVALEEPMAMRSGKVTRVLIEMYTTARLAAVLRHIPIIDVTPQKLKLYTAGHGGAEKDD 121 Query: 122 VQHMVRTLLKLP 133 V + L Sbjct: 122 VARALCEHYGLE 133 >UniRef50_B6ALY9 Probable crossover junction endodeoxyribonuclease (RuvC) n=3 Tax=Leptospirillum RepID=B6ALY9_9BACT Length = 158 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 5 LGIDPGSRVTGYGVIRQVG-RQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPD 62 LG+DPG TG+ V+ +L L G +RT + R+ L++ + +++++ Sbjct: 2 LGVDPGLAATGFAVLEGPSLDRLRVLAQGTVRTDSTLPVSRRIGLLFDRLDALLSEYPVK 61 Query: 63 YFAIEQVFMAK-NADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 A+E F + + + L LG G+ + A +P+ + R++K + G G+A K Sbjct: 62 GIALEDHFSRRASPGAGLMLGPVVGIVALLADRHGVPLLPISPRELKHRITGTGAASKEA 121 Query: 122 VQHMVRTLLKLP-ANPQADAADALAIA 147 VQ+ + L DA+ +A Sbjct: 122 VQNALSVWLGAGLRIGSTHEGDAMGLA 148 >UniRef50_UPI00016C63C7 crossover junction endodeoxyribonuclease ruvC n=1 Tax=Clostridium difficile QCD-63q42 RepID=UPI00016C63C7 Length = 164 Score = 112 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL---PSRLKLIYAGVTEIITQF 59 ++L +D TG+ VI R L G I TK D R+ I + EIIT Sbjct: 1 MVLALDISMSSTGWAVI---NRNKKVLKYGKIVTKKDKFKSEDERMCYICNTIQEIITTH 57 Query: 60 QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 +E F ++N+ + L L + G + + + +++ ++ G A+K Sbjct: 58 NIQIVLVEDQFTSRNSKTILSLRKLLGAIMRTVKLNNIEIEYMYPVSIRKYLMNNGKAKK 117 Query: 120 SQVQHMVR-TLLKLPANPQ-------ADAADALAIAITHCH 152 +V VR ++ + +D DA+A+ I + + Sbjct: 118 EEVAAYVRENIIDIGEYIDRTCKAKTSDIYDAIALGIAYLN 158 >UniRef50_A3IVL4 Holliday juction resolvase; RuvC n=4 Tax=Cyanothece RepID=A3IVL4_9CHRO Length = 130 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 28 YLGSGCIRTKV-DDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARG 86 + G + T D LP RL I A + EI+ ++Q AIEQ F+ S KL Q G Sbjct: 1 MVDFGLVETDSHDPLPYRLGEIEADLREILQEYQVTNIAIEQPFIQPEFPSMTKLLQVLG 60 Query: 87 VAIVAAVNQE-LPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALA 145 V + A LP Y A ++ + AE+ + +V L L + DA+A Sbjct: 61 VINLVAYRHGCLPTMIYPATW--KSNLDHPKAEREDLTAIVEELFDLQSILLNQEVDAIA 118 Query: 146 IAIT 149 +A T Sbjct: 119 VAYT 122 >UniRef50_C3CV70 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV70_BACTU Length = 163 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 13/149 (8%) Query: 14 TGYGVI--RQVGRQLSYLGSGCIRTKVDDL-PSRLKLIYAGVTEIITQFQPDYFAIEQVF 70 GY I Q L +G ++TK +L RL IY + ++ D A E++F Sbjct: 1 MGYAFIEYDIDTNQYMKLDTGTLKTKSSELLEDRLLTIYEMIKTYNLKYNTDIIACEKLF 60 Query: 71 MAKNAD--------SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 S + GV + A L + ++ VK+ V G G A K + Sbjct: 61 YNPKQKNDNRNKSASIMTTNMVTGVVFLVAGELGLWIKDFVPGTVKKHVAGYGRATKEDL 120 Query: 123 QHMVRTLLKLPAN--PQADAADALAIAIT 149 Q + + DA+ IA+T Sbjct: 121 QKAIEDFCEQHGIKAKTNHETDAIGIALT 149 >UniRef50_C0ZXA4 Putative uncharacterized protein n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZXA4_RHOE4 Length = 185 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 19/167 (11%) Query: 1 MAIILGIDPGSRVTGYGVIRQVG-----RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEI 55 M ++G+DP G ++ G + G ++ L R I I Sbjct: 1 MTTVVGLDPSLTAAGIAILGSPGTTDTPNVPKLVTVGVSGSESATLAERSTRIGDQFERI 60 Query: 56 ITQF--QPDYFAIEQVFMAKNADSALKLG---QARGV----AIVAAVNQELPVFEYAARQ 106 I IEQ+ +A K Q R +++PV E A Sbjct: 61 IRSMPSSVRLVVIEQLPF-----TAPKFAAKYQERCALYYRVTEFLARRKIPVVEVGATT 115 Query: 107 VKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 +K+ G G A+K +V + +R L + ADALA+A Sbjct: 116 LKKYATGDGRADKREVVNAMRDLWPHAKVRNDNEADALALATIGAMH 162 >UniRef50_D2LVB2 Putative uncharacterized protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LVB2_BACS4 Length = 170 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 6/160 (3%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF 59 M +L +D GY + Q + G I+ D R+ + + E++ + Sbjct: 1 MPRLLSLDQSITSCGYSIFEIHNNQSELIDYGTIKLNTKLDYFERIICLENILNEMVKDY 60 Query: 60 QPDYFAIEQVFMAKNA--DSALKLGQARGVAIVAAVNQELPVFEYAARQVK---QTVVGI 114 +E + + + KL + + + + V G+ Sbjct: 61 NIKLAIVEDIQKHRGTGLTTYKKLSSLLFFLQYFFYYRNIECQVVHVNTWRNGYRNVFGL 120 Query: 115 GSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVS 154 K V + +L P++ +D++A+ + HCH + Sbjct: 121 PRINKDIVYEHIFNILGEPSDFDNHQSDSIAMGLFHCHHN 160 >UniRef50_Q19Z77 Gp9 n=2 Tax=unclassified Siphoviridae RepID=Q19Z77_9CAUD Length = 230 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 19/170 (11%) Query: 1 MAIILGIDPGSRVTGYGVI------------RQVGRQLSYLGSGCIRTKVDDL----PSR 44 M ILGID TG R+ Q+ G + K D R Sbjct: 40 MPRILGIDTSLTGTGLARAVLPDVQRGVDMPREWPAQVDLATVGASKPKKGDTWLARSRR 99 Query: 45 LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 104 + + G+ + D +E++ D+ + L G + +++P++ Sbjct: 100 VHEVLDGIAGALDDGHYDAVGLEELAYGAKGDAVVVLHWLWGEVVNLVRLRDIPLYLVNV 159 Query: 105 RQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAIT---HC 151 VK+ G G+A+K +V + + +DALA+ + HC Sbjct: 160 SGVKKFATGNGNAKKDEVMLAMANRFPQYTIKDNNQSDALAVCMMTARHC 209 >UniRef50_B3VLT4 Gp5 n=9 Tax=unclassified Siphoviridae RepID=B3VLT4_9CAUD Length = 193 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 50/173 (28%), Gaps = 24/173 (13%) Query: 3 IILGIDPGSRVTGYGVIR----QVGRQLSYLGSGCIRT----------KVDDLPSRLKLI 48 ILGID TG I + T D R + Sbjct: 2 RILGIDTSLTGTGLARIDLATWPPSNPPRQDDETVVFTADTATVSAPGPTKDKSKR--AM 59 Query: 49 YAGVTEIITQF--------QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 V +I Q +PD +E + SA L G I ++P+ Sbjct: 60 CRRVNALIDQIEWCFQDGEKPDAVGMEALAYGAKGASAWVLPWVFGRVIELCEKYDVPLT 119 Query: 101 EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 Q + G G+A+K V + L + ADAL + C Sbjct: 120 IVGTSQRAKFATGKGNADKETVLLAIAKALPQADPRNNNEADALTVGAVVCQS 172 >UniRef50_B6JE97 Holliday junction resolvasome, endonuclease subunit n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JE97_OLICO Length = 174 Score = 99.0 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 10/172 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IIL +D TG+ G G I DD+ + A + + +P Sbjct: 6 IILSLDVA-TNTGWCAGE-PGNPNPDFGHFTIPPTGDDVGTYGLKYSAWLKGQLEGLKPA 63 Query: 63 YFAIEQVFMAKN--ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKS 120 E + K +A KL + +AA ++ + V E A VK+ G G A+K+ Sbjct: 64 LVIFEAPILPKKTTPTTARKLMGLAMLTEMAARHRGITVREGRASTVKKHFTGNGWAKKA 123 Query: 121 QVQHMVRTLLKLPANPQADAADALAI---AITHCHVSQNAMQMSESRLNLAR 169 + A D ADA A+ A+ C+ ++A + + + + Sbjct: 124 DTM-AIARRYGW-AVRTDDEADACALWAYAVC-CYAPEHATRFALGPIAARQ 172 >UniRef50_B8IAN4 Putative bacteriophage-related protein n=3 Tax=Methylobacterium RepID=B8IAN4_METNO Length = 175 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 11/174 (6%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M IL +D TG+ + G G + + +D+ L ++ I Sbjct: 1 MRKILALDLSVASTGWALGSPDGDPA--FGHYALPSTGNDIGKLLAAFQDWLSLKIAGED 58 Query: 61 PDYFAIEQVFMAKNAD---SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 E +++ +A KL GV + + E + K+ G G A Sbjct: 59 IALCVFEAPILSRGKTHVLTARKLMGLAGVTELICHRAAIRCVEEHLQTNKKRFAGHGHA 118 Query: 118 EKSQVQHMVRTLLKLPANPQADAADALAI---AITHCHVSQNAMQMSESRLNLA 168 +K + H V + D ADALA+ + + +A + L Sbjct: 119 DKHTMMH-VARRYGWD-VTRDDEADALALWVGGVC-TYAKAHAGRYLSGPLGAR 169 >UniRef50_Q19YZ7 Gp8 n=3 Tax=unclassified Siphoviridae RepID=Q19YZ7_9CAUD Length = 216 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 49/170 (28%), Gaps = 21/170 (12%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGR-------------QLSYLGSGCIRTKVDD-----LP 42 M +L +DP TG + + R + L D + Sbjct: 25 MTRVLSVDPSLTSTGLCRVDLIPRPTSSEPRGDNEPVRAEILLHAVKSKPTADKSYLAMS 84 Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAA-VNQELPVFE 101 R++ I V + D IE G AA VN +PV Sbjct: 85 RRIEKIADTVRAAMDGC--DLIVIEGPSFGSKGQHTHSRDWLWGKIFDAARVNWGIPVLV 142 Query: 102 YAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHC 151 Q + G G+A+K V D ADAL +A C Sbjct: 143 VTPSQRMKYATGKGNAQKDAVLAAAIKRWPDVEIDGNDQADALILAAIGC 192 >UniRef50_A9U6S4 Predicted protein n=2 Tax=cellular organisms RepID=A9U6S4_PHYPA Length = 225 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCI-RTKVDDLPSRLKLIYAGVTEIITQFQP 61 +LG+D S G I R + + + T D R + + +++ I + +P Sbjct: 55 RVLGLDLSS-SPGAAAIEVRNRTPYLIAASSVATTNDDTDAVRNVAVESFISQFIYENRP 113 Query: 62 -DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY----AARQVKQTVVGIGS 116 D E +N + + + A A + + + VK+ V G G Sbjct: 114 FDIVVREDFTTGRNKRATQLVFGSWAAADRALLAFGYRAEDLDPPLSPTYVKKAVTGDGK 173 Query: 117 AEKSQVQHMVRTLLKLPAN----PQADAADALAIAI 148 AEKS+V VR L+LP + D +DA A+ + Sbjct: 174 AEKSEVAKAVRKWLRLPDDYPFRAGYDDSDACAVVL 209 >UniRef50_B4B914 Holliday junction resolvasome endonuclease subunit-like protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B914_9CHRO Length = 170 Score = 92.1 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 11/156 (7%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 I+G+DPG ++ + CI + +L ++ I T+ + F + Sbjct: 6 IIGVDPGLNYLAVSLLDSNK---KLMDFNCIEQEQEKNLENKYNNINRKFTKWFSNFNKE 62 Query: 63 --YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK- 119 +E ++ K+ +A + I AA +L + + A VK + G K Sbjct: 63 KTIIILEFPVFMIKTENTKKVDKATEIIINAANKFDLKIHKIAPNHVKFLITGNSRISKV 122 Query: 120 ---SQVQHMVRTLLK-LPANPQADAADALAIAITHC 151 QV+ MV + L A D++AI +T Sbjct: 123 GLFEQVKGMVSNIPSTLSAYTNNHITDSIAIGLTGI 158 >UniRef50_A7KUW6 RuvC n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KUW6_9CAUD Length = 177 Score = 92.1 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 26/171 (15%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGS--GCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 I+GID TGY + + I+ R++ + A ++ I+ Sbjct: 2 RIMGIDASLSTTGYAIYDTEIGDFILIDKIRTSIKKATPTRSKRIQYLCAELSHIMFWNY 61 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVA---IVAAVNQELPVFEYAARQVKQTVVGIGSA 117 D E +++A+ +AL LG RG + + L + E + ++K+ V G G+A Sbjct: 62 VDVVVTEDIYVAQ-KSAALPLGMVRGAIEQLVYDLEFEGLHIIE--STKMKKAVTGNGNA 118 Query: 118 EKSQVQHMVRTLLKL----------------PANPQADAADALAIAITHCH 152 K ++ + K A D ADA + + H + Sbjct: 119 NKLLTYETLKEIYKDSPLVMEALGKELISDNSAKKNEDMADA--VGLVHAY 167 >UniRef50_C3IV59 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Bacillus thuringiensis IBL 4222 RepID=C3IV59_BACTU Length = 143 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 4/129 (3%) Query: 25 QLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQ 83 + + +G I D ++ + + ++ E F N D+ KL + Sbjct: 4 KHDIIEAGKIDIPSKGDEGDKIIYQIERIEALFEKYDITKILCEDQFSKLNIDTLKKLTR 63 Query: 84 ARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLL---KLPANPQADA 140 G + A +L + ++ G G A+K H V L L D Sbjct: 64 VSGTILYLAKKHKLEIELIYPTSWRKIFHGSGKAKKEDTFHKVVALYEFENLEFKKDNDL 123 Query: 141 ADALAIAIT 149 DA+ IA Sbjct: 124 TDAIGIAWA 132 >UniRef50_B4AHF0 Putative uncharacterized protein n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF0_BACPU Length = 186 Score = 88.6 bits (219), Expect = 8e-17, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 19/168 (11%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQF- 59 L D G +I + ++ R ++I + + Sbjct: 7 IRCLAFDTSMTCPGVAIIEVRKGKPIIKALSHVKPNTSRSHAHRAEVIEGWAMLFLDKHV 66 Query: 60 ---QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY------------AA 104 DY E F K + S + A A L +Y +A Sbjct: 67 GTAGFDYVVRED-FAGKTSRSNYPVLSAWNACERATSRFGLTFDKYKKPGKKTEDLGISA 125 Query: 105 RQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQA-DAADALAIAITHC 151 +VK V G G+AEK +V+ VR + D +DA AI + Sbjct: 126 TRVKSLVAGSGNAEKDEVEAGVRRITGYDGTFANFDESDAAAIGLAWL 173 >UniRef50_Q8SD22 PHIKZ140 n=1 Tax=Pseudomonas phage phiKZ RepID=Q8SD22_9CAUD Length = 187 Score = 85.6 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 27/177 (15%) Query: 3 IILGIDPGSRVTGYGVIRQV-GRQLSYL-------------GSGCIRTKVDDLPSRLKLI 48 +L +DPGS+ G ++ + I +R++ + Sbjct: 12 RVLALDPGSQNLGIAILEDKLDGSNKVVRNAFTCHLKDTNPAYAAISEVHGSRFTRMQQM 71 Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQE--LPVFEYAARQ 106 V I+ +P +E ++ K A S L + A + +P++ Sbjct: 72 SDVVLNILHTEKPHAVIVESNYLGKFAQSFAVLVECVTYVHRALYEYDRFIPLYMIDPTT 131 Query: 107 VK-----QTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADA---LAIAITHCHVSQ 155 VK + V G K V+ +R+ + N D+ D A AI + ++++ Sbjct: 132 VKINAGMKKVKGT---TKDDVKEAMRSRTDITWNIDIDSLDDHSMDACAIAYYYLTR 185 >UniRef50_C3RQB8 Predicted protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RQB8_9MOLU Length = 172 Score = 85.6 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAK-NADSALKLGQARGVAIVAAVNQELPVFE 101 +++ I + + I ++ P F E +F+ K S+ L + G+ I +N P+ Sbjct: 46 EKMRYISTYINDFIKKYPPKSFTAEGIFIKKEFLASSETLMKVHGMVIEKFINY--PIKY 103 Query: 102 YAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAIT 149 +K+ + G G+A K V+ + L + D ADALA+ +T Sbjct: 104 IPPANIKKNITGKGNASKELVRQNICKKLNIQGI-NYDEADALALMLT 150 >UniRef50_B8FNH8 Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FNH8_DESAA Length = 189 Score = 84.8 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 18/148 (12%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK---------VDDLPSRLKLIYAGVT 53 +IL +D G TGY V Q G T DD R + + Sbjct: 1 MILALDVGLSNTGYCVFENGKPQ----EWGVCTTSPVKKKTVRVADDRADRSASLARQIR 56 Query: 54 EIITQFQPDYFAIEQVFMAKNADSALKLG---QARGVAIVAAVNQELPVFEYAARQVKQT 110 ++ + E + A SA +G QA G+ A +P VK+ Sbjct: 57 AVVEKHGVTGIVGELP--SGGAQSAKAMGDMTQAVGIVAATAALLGIPAEWCTPTDVKKA 114 Query: 111 VVGIGSAEKSQVQHMVRTLLKLPANPQA 138 G SA K ++ + L + Sbjct: 115 ATGKASASKEEIADAMAKKYGLEKVVKH 142 >UniRef50_A6T1P7 Putative uncharacterized protein n=7 Tax=Proteobacteria RepID=A6T1P7_JANMA Length = 258 Score = 83.6 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 23/158 (14%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL-PSRL---KLIYAGVTEII 56 + IL +D G+ TG+ + GR G I + + P R + Y + Sbjct: 106 LPSILALDLGTT-TGWAL---RGRD------GTICSSSEAFKPQRFEGGGMRYLRFKRWL 155 Query: 57 TQFQPDYFAIEQVFMAKNADSA-LKLGQARGVAIV----AAVNQELPVFEYAARQVKQTV 111 T+ + I+ VF + A + A G + + ++P +K+ Sbjct: 156 TEIKQSCDGIDAVFFEEVRRHAGVDAAHAYGGFMAHLTAWCEHHKIPYQGVPVGTIKKHA 215 Query: 112 VGIGSAEKSQVQHMVRTLLKLPANPQAD-AADALAIAI 148 G G+A K ++ +R P D +DALAI + Sbjct: 216 TGKGNASKDEMIGAMRQR---GFQPGDDNESDALAILL 250 >UniRef50_C6ADE4 Phage related protein n=32 Tax=root RepID=C6ADE4_BARGA Length = 160 Score = 82.9 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 23/154 (14%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR----LKLIYAGVTEIITQ 58 IIL +D G TG+ + G I + +D SR + Y +T+ Sbjct: 7 IILCLDLG-TKTGWAICGADGH---------ITSDTEDFQSRRFEGGGMRYLRFKRWLTE 56 Query: 59 FQ-----PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVG 113 + D E+V D++ G + ++P +K+ G Sbjct: 57 LKRSVDEIDAVYFEEVRRHVGTDASHIYGGFLATLTAWCEHHQIPYEGIPVGTIKKATTG 116 Query: 114 IGSAEKSQVQHMVRTLLKLPANPQAD-AADALAI 146 G+A K M++ + P+ D ADALAI Sbjct: 117 KGNASK---VKMIKAICAKGHVPKDDNEADALAI 147 >UniRef50_D0UWA9 Putative uncharacterized protein n=1 Tax=Streptomyces sp. ZL12 RepID=D0UWA9_9ACTO Length = 201 Score = 80.9 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 14/157 (8%) Query: 4 ILGIDPGSRVTGYG-------VIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEII 56 ++G+DP TG VI + G + RL + V +++ Sbjct: 19 VVGLDPSLTATGIASTRGWCEVIGYRKARAK--DPGITQLPH---TERLTAMRNLVDQVV 73 Query: 57 TQF-QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIG 115 T PD IE ++++ A + G N +LP+ + Q G G Sbjct: 74 TAIGHPDLVVIELPAVSRSGGGAHERGWFWWQLYNQLHNTQLPIGLLSPNQRALYATGKG 133 Query: 116 SAEKSQVQHMVRTLLK-LPANPQADAADALAIAITHC 151 +A K V V + +AADA+ + Sbjct: 134 NAAKGAVIDQVSRRFPAWSTDGNDNAADAVTLMAAGA 170 >UniRef50_B4BNF7 Putative uncharacterized protein n=1 Tax=Geobacillus sp. G11MC16 RepID=B4BNF7_9BACI Length = 222 Score = 80.6 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 10/145 (6%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +GIDP R TG+ + G + + I + D P+R+ + V + + D Sbjct: 60 RFVGIDPSLR-TGFVALSPFG---EVIEAKEIE-REGDDPARMSELIQAVVDSV--HDTD 112 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 + AIE + LG + + +P + A +K+ G+A K +V Sbjct: 113 FVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGIPYIDVAPSLLKKFAGAKGNANKEKV 170 Query: 123 QHMVRTLLKLPANPQADAADALAIA 147 V ++ + DA +A Sbjct: 171 VLEVYKRWGFESD-SNNVVDAFILA 194 >UniRef50_UPI0001BCAEA7 hypothetical protein FperA3_10306 n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEA7 Length = 177 Score = 80.2 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 7/149 (4%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYF 64 + ID G V +L S R I + EII++++P Sbjct: 20 ISIDLSKTCPGISVYDHEKNYFLFLNSFK-GNNKLANHERNLEILYWILEIISKYRPYKA 78 Query: 65 AIEQVFMAKNA-DSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 IE F++ S L + G+ L ++E + + + + K + Sbjct: 79 IIESPFISTFTIKSVGPLMKLHGIIDHFLFENGLEIYEISPTSSRSYLKIKPN-TKEEAF 137 Query: 124 HMVRT---LLKLPANPQA-DAADALAIAI 148 V++ +L L + D +DA+ +A+ Sbjct: 138 KFVKSKYPILDLTTFKKDNDKSDAVILAL 166 >UniRef50_Q6VY77 Putative uncharacterized protein n=3 Tax=root RepID=Q6VY77_9CAUD Length = 258 Score = 79.8 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 12/143 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +LG+D TG + G + I+T+ D RL + + + +P Sbjct: 86 RVLGLDLSLTSTGVCL--PDGSTVR------IKTRQKDGDRRLVQVRDFIRAAVAGDRPH 137 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 IE + K+A SA + G + ++ +P +K G+A+KS++ Sbjct: 138 VAVIEDL--PKHAMSAGLTARVHGPVVCELIDAGVPYAYVVPATLKSYACDHGAADKSRM 195 Query: 123 QHMVRTLLKLPANPQA--DAADA 143 + D DA Sbjct: 196 SAAAYLAAGVEFVGDPGGDQCDA 218 >UniRef50_UPI0000D54CFC Holliday junction resolvasome, endonuclease subunit, RuvC n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54CFC Length = 76 Score = 77.9 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQPD 62 ++GIDPG TG+ VI + G ++ YLGSG T D+ SRL I + II F+ Sbjct: 3 VIGIDPGLIHTGWAVIEEDGPKIKYLGSGTCNTSNKSDMASRLVSILEQLRLIILNFKIK 62 Query: 63 YFAIEQVFMAKNA 75 AIE+ F+ + Sbjct: 63 SGAIEKAFVKNDP 75 >UniRef50_A4IS84 Putative phage protein n=3 Tax=Bacillaceae RepID=A4IS84_GEOTN Length = 186 Score = 77.9 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 12/146 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 +GIDP TG ++ G + + I D P+R+ + VT + QPD Sbjct: 25 RFVGIDPSL-HTGLVILSGQG---KIIEAKEISKDGSD-PARMNALIQEVTYYV---QPD 76 Query: 63 -YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 + AIE + LG + + +P + A VK+ G+A K + Sbjct: 77 DFVAIEG--FGYASQRGFLLGGIGWGMRMELYRRGVPYIDVAPSLVKKFAGAKGNANKEK 134 Query: 122 VQHMVRTLLKLPANPQADAADALAIA 147 V V ++ + DA +A Sbjct: 135 VVLEVYKRWGFESD-SNNVIDAFVLA 159 >UniRef50_D1JM27 Predicted protein n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JM27_9BACE Length = 166 Score = 77.1 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 37 KVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQE 96 K + + K+ Y + E I ++ E V ++K+ +A KL + RG+ + Sbjct: 47 KGKNATEQHKMFYDTLVEFIQKYNIKLIIAEDVCVSKHFIAARKLSEFRGILYLICAQLG 106 Query: 97 LP-VFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCH 152 LP VK+ G G A+K ++ + + ADA TH Sbjct: 107 LPEPKFINVSTVKKWATGDGKADKKKMIEYCIKRWNI-TPVDDNMADA-----THIF 157 >UniRef50_A0Q9I8 Gp6 protein n=1 Tax=Mycobacterium avium 104 RepID=A0Q9I8_MYCA1 Length = 203 Score = 75.9 bits (186), Expect = 5e-13, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPS---RLKLIYAGVTEIITQFQ 60 ++G+D G V LS K D L + R + + G+ + Sbjct: 11 VVGLDLSLTGAGIAAFDLVTGDLSTAVHRSQAPKSDTLGAHVARHRALVDGIVQQTIGCD 70 Query: 61 PDYFAIEQVFMAKNAD--SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 P +E + + +A S + G + VN PV E Q+KQ G G+A Sbjct: 71 PALVVVEGLRFSVSAQDSSLSRRGFLWWAVVEGLVNAGAPVLEVTPSQIKQLATGKGNAS 130 Query: 119 KSQVQHMVRTLLKLPANPQADAA 141 K +M+ L DA Sbjct: 131 K----NMIVAEYAL---RWPDAT 146 >UniRef50_C3PY89 Predicted protein n=1 Tax=Bacteroides sp. 9_1_42FAA RepID=C3PY89_9BACE Length = 161 Score = 74.8 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 17/159 (10%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGC---IRTKVDDLPSRLKLIYAGVTEIITQFQ 60 +L +D TGY S +G +K + + ++ ++ Sbjct: 16 VLALDIA-THTGY---------FSLHEAGTWNFTESKRRNGNKMHGAFRTTLLSLLRRYG 65 Query: 61 PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY-AARQVKQTVVGIGSAEK 119 E V + ++ +L + RG+ + ++P E+ +K+ G G A K Sbjct: 66 IRRVVAEDVSVNRHFYDMRRLSELRGILLEVCDELDIPEPEFVNPAVLKKWATGDGHATK 125 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAM 158 +Q+ + + P D A A A + + ++ ++ + Sbjct: 126 TQMVAACKDRYGI--VPVDDNA-ADACHLFYYYIRRHRL 161 >UniRef50_B1ZCZ8 Putative uncharacterized protein n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZCZ8_METPB Length = 185 Score = 72.1 bits (176), Expect = 8e-12, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 15/148 (10%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQP 61 +LGIDPG GY G++ SG IR + + V II ++ Sbjct: 2 RVLGIDPGGAS-GYA-YGLPGQKPK---SGTIRLDSGFSNGRKFATLEGRVRNIIGVYEI 56 Query: 62 DYFAIEQVFMAKNAD----SALKLGQA-RGVAIVAAVNQEL---PVFEYAARQVKQTVVG 113 D IE ++ + ++LG + ++A + + + ++ +G Sbjct: 57 DAVFIEAPYIQTDPRKFDIQVVRLGYGYQAAILMACEKEGIGPERISLVEPNLWRKFAIG 116 Query: 114 IGSAEKSQVQHMV-RTLLKLPANPQADA 140 G+A K R LK A + DA Sbjct: 117 RGNAPKDIGAFKSGREWLKHEAVKKCDA 144 >UniRef50_Q1CP43 Phage protein n=14 Tax=root RepID=Q1CP43_STRPF Length = 170 Score = 71.7 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 32/161 (19%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEI----ITQF- 59 L +D + TG+ + + + SG + K R K + + + I I + Sbjct: 6 LSLDVSTTGTGWAIFDGS----TLIQSGASKPKQKSFYERAKSMTSELKTIQLRAIQKHD 61 Query: 60 QPDY-FAIEQ-VFMAKNADSALKLGQARGVA---IVAAVNQELPV--------FEYAARQ 106 +P IEQ + N S++K+G A G+ ++A + V F Y R Sbjct: 62 KPFEDIVIEQNTVLGPNQQSSIKIGIATGIILGRLLAEEIYFVNVSTWRKYWKFSYKDRS 121 Query: 107 VKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIA 147 K+++ K Q + V + D ADA+ I Sbjct: 122 -KKSM-------KKQAINAVAAEFN--KQVKDDEADAILIG 152 >UniRef50_UPI0001694EFC hypothetical protein Plarl_04065 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694EFC Length = 185 Score = 71.7 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 15/162 (9%) Query: 3 IILGIDPGSRVTGYGVIRQVG--RQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 +GIDP S TG+ + Q+G + L G ++ I V EI+ Q Sbjct: 2 RFVGIDP-STKTGFVALDQLGKVSKAKELT-GINKSDS-------IRIITLVDEIMDHIQ 52 Query: 61 P-DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 P D IE A + ++ A +++P E Q+K+ G G+A+K Sbjct: 53 PGDRVFIEGFAHAAKGNYVSQMFGIGWGIRTALTRRKVPYTEVTPSQLKKFATGKGNAKK 112 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMS 161 + + N + DA +A H + ++ Sbjct: 113 EDLILPIYQDWGF-ENSSDNVRDAFILA--HIAYETHLLKNG 151 >UniRef50_Q6J7Y5 Pas46 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q6J7Y5_9CAUD Length = 164 Score = 71.7 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 11/140 (7%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 ++G+D TG + + +RL I V E +T D Sbjct: 3 VVGLDLSMTQTGVC------HTVEGAACWHVIKPKRVKDARLPEIVDQVLEYVTGA--DL 54 Query: 64 FAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 +E + N A G +G+ + +P + +K+ G G A K+++ Sbjct: 55 ALLEML--PPNMKGAGITGMVQGIVRLELQRAGIPYGDIGPSSLKKYATGKGGASKTEMA 112 Query: 124 HMVRTLLKLPANPQADAADA 143 T +A DA Sbjct: 113 LAALTR-GGAEISNDNACDA 131 >UniRef50_Q1A0A9 Gp7 n=1 Tax=Mycobacterium phage Cooper RepID=Q1A0A9_9CAUD Length = 158 Score = 67.5 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 1/118 (0%) Query: 37 KVDDLPSRLKLIYAGVT-EIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQ 95 + R+ + + +PD IE + SA L G I A Sbjct: 20 SKRAMCRRVNALLEQIEWCFTDDERPDAMGIEALAYGAKGASAWVLPWIFGRVIELAEKY 79 Query: 96 ELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHV 153 ++P+ + + G G+A+K V + A + ADAL + C Sbjct: 80 DVPLTTVSTAGRAKFATGKGNADKETVLLAAARAVPEAAVTNNNEADALIVGAVVCQR 137 >UniRef50_Q858D2 Crossover junction endodeoxyribonuclease n=1 Tax=Salmonella phage epsilon15 RepID=Q858D2_9CAUD Length = 154 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 18/156 (11%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 MA +LGIDPG + +I + G + +L I+ + A V + Q+ Sbjct: 1 MAAVLGIDPGCSGS-LVLITEQGHYIDHLAMPTIKVGTKSRVN-----GAAVAAWVRQYV 54 Query: 61 PDYFAIEQVFM--AKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 + +EQV + S G A GVA +P + K++ G+ ++ Sbjct: 55 ITHAYLEQVGAMPGQGTASMFTFGHAAGVAEGILQGLNIPYTLVTPQAWKKSA-GLIGSD 113 Query: 119 KSQVQHMVRTLLKLPANPQADA-------ADALAIA 147 K R + P DA ADAL IA Sbjct: 114 KD--AARSRAIQLYPELRALDAKAKGQAIADALLIA 147 >UniRef50_UPI0001AF06E0 hypothetical protein AbauAB_10287 n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF06E0 Length = 200 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 21/137 (15%) Query: 5 LGIDPGSRVTGYGV--IRQVGRQL------SYLGS--------GCIRTKVDDLPSRLKLI 48 +GIDP R G V I L +R DDL R K++ Sbjct: 6 IGIDPSLRNFGLVVAEIDISNDDYPFEIKDMMLAQTESSKETKKTVRKNSDDL-RRAKIL 64 Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVK 108 + G+ +I + + + +E + +A + + G+ I +P+ + +VK Sbjct: 65 HDGMMHMINKHKVTFAFVEIP---TGSQTARAMS-SYGICIGILSACPVPMIQLTPFEVK 120 Query: 109 QTVVGIGSAEKSQVQHM 125 GI +A K ++ Sbjct: 121 LAGTGIKTATKHEMIEA 137 >UniRef50_B8INW2 Putative bacteriophage-related protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INW2_METNO Length = 172 Score = 66.7 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 9/173 (5%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 + IL +D +R G+ G + +Y G+ + + +D+ + ++IT Sbjct: 3 LRKILTLDLATR-CGWAC-GAPGSEPTY-GTKVLPSTGEDIGRFADAFNTWLLDMITLEN 59 Query: 61 PDYFAIEQVFMAKNAD--SALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE 118 P E +A +A KL +E+ E + VK+ G G A+ Sbjct: 60 PALIVFEAPILAGQTTLATARKLTGLAWHTEFVCRVREVRCKEAHLQSVKKFFAGSGRAD 119 Query: 119 KSQVQHMVRTLLKLPANPQADAADALAI-AI-THCHVSQNAMQMSESRLNLAR 169 K + R A +D ADAL + A H + A + + L A Sbjct: 120 KEAMIAAARRF--GWAPKTSDEADALGLWAFSVHQEAPRFASRFAVGGLARAG 170 >UniRef50_B6JDL8 Holliday junction resolvasome, endonuclease subunit n=21 Tax=cellular organisms RepID=B6JDL8_OLICO Length = 178 Score = 63.2 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 11/149 (7%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL---PSRLKLIYAGVTEIITQFQ 60 IL +D GS TG+ + G + SG + + + ++E+ Sbjct: 27 ILALDLGST-TGWALRDTTG----VITSGVQQFRPNRFEGGGMAFLRFNHWLSELAGSPG 81 Query: 61 P-DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEK 119 P E+V +A G A +++P +K+ + G G+A+K Sbjct: 82 PIAAVFFEEVRAHAGTLAAHVYGGFLAHLEAWAEFRDVPYQGVPVGTIKRFIAGKGNADK 141 Query: 120 SQVQHMVRTLLKLPANPQADAADALAIAI 148 V V+ A + ADA+AI + Sbjct: 142 QAVIAAVKAR--GFAPIDDNEADAIAILL 168 >UniRef50_A8V1X8 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V1X8_9AQUI Length = 179 Score = 63.2 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDD--LPSRLKLIYAGVTEIITQ 58 M+II IDPG TGY V G L G I+T D R+ I V ++I + Sbjct: 1 MSII-AIDPGIEKTGYAV----GANNKVLEIGTIKTSKKDGTDFDRVSKIKEAVRDLILK 55 Query: 59 FQPDYFAIEQVFMAKNA 75 Q IE+ + N Sbjct: 56 HQVSLMLIEEYHVYGNP 72 >UniRef50_A6MAE5 Gp080 n=1 Tax=Lactococcus phage KSY1 RepID=A6MAE5_9CAUD Length = 173 Score = 62.8 bits (152), Expect = 5e-09, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 8/154 (5%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 IL +D S TG+ L I + + R++ I + + T PD Sbjct: 2 RILALDYSSASTGFCWYDTEDGTLIL---DSIVPEEESKADRIQNITYKLLRLPT---PD 55 Query: 63 YFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 Y +E+V NAD+ L + G I V Q +++ G ++ Sbjct: 56 YMVVEEVKSMINADTLRTLLRGVGYTIGQLNVCYRDVEFVGPGQWRKSAWGKSPRKRDDA 115 Query: 123 QHMVRTLLKLPANP--QADAADALAIAITHCHVS 154 + + +L P D A+AL I + + + Sbjct: 116 KQLAMDMLWDWCIPYSNDDEAEALGIMLYYIKHN 149 >UniRef50_C8XUH5 Conserved hypothetical phage protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUH5_9CAUD Length = 196 Score = 61.7 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 14/128 (10%) Query: 43 SRLKLIYAGVTEIITQFQPDYFAIEQVFMA--KNADSALKLGQARGVAIVAAVNQELPVF 100 R I ++ +PD +E M KN+++ + + + A Sbjct: 61 ERFYNICKWAEAVLLTEKPDAITLEGYAMGNSKNSNNICQTAENTSLLKQALRRNNFDFQ 120 Query: 101 EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL------------PANPQADAADALAIAI 148 VK+ G+A+K + +L + P D D+ AI Sbjct: 121 IVTPSHVKKMFTDKGNADKHAMIAHFESLFNVNMRGIMDMLEVKDPKPIDDLVDSFAIMA 180 Query: 149 THCHVSQN 156 + +N Sbjct: 181 CGSYFIEN 188 >UniRef50_UPI0001692F19 crossover junction endodeoxyribonuclease RuvC n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692F19 Length = 76 Score = 60.9 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 91 AAVNQELPVFEY-AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPAN---PQADAADALAI 146 A V ++ + VK+ V G G AEK V VR LL LP + D +DA A+ Sbjct: 4 ALERFGQHVTDHLSPSTVKRIVAGNGKAEKEDVAEEVRKLLGLPLDHVFASDDESDACAV 63 Query: 147 AITHC 151 + Sbjct: 64 VLAWL 68 >UniRef50_C8ZKS9 N4 gp46-like protein n=2 Tax=unclassified N4-like viruses RepID=C8ZKS9_9CAUD Length = 186 Score = 60.5 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 56/187 (29%), Gaps = 30/187 (16%) Query: 1 MAI--ILGIDPGSRVTGYGV--IRQVGRQLSYLGSGCIRTKV---------DDLPSRLKL 47 MA ++G+DP G LS I+T D +R Sbjct: 1 MARLNVVGMDPSMSNWGLACGQYDTTSNTLSLRHIEVIKTSKTKDKQIRVNSDDLNRSTE 60 Query: 48 IYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 107 I V E+I + +E +++A + G G + A P + Sbjct: 61 ITTRVMEVIKEANV--IFVEVPVGSQSAAAMKSYGMCIG-ILSAVRASGKPFHLLTPTDL 117 Query: 108 KQTVVGIGSAEKSQVQH-MVRTLLKLPANPQA----------DAADALAIA---ITHCHV 153 K +A K + V+ L ADA A A + H + Sbjct: 118 KVMACNSKTASKEAMIEWAVKKYPHLNWPMTPKGEVIASRAEHMADACAAAEYGVFHHND 177 Query: 154 SQNAMQM 160 + A+ M Sbjct: 178 FKLALAM 184 >UniRef50_UPI0001693708 crossover junction endodeoxyribonuclease RuvC n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693708 Length = 55 Score = 60.5 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEI 55 ILGIDPG + G+G I +V +L + G I+T+ P RLK +Y E+ Sbjct: 2 RILGIDPGIAIVGFGFIDKVSSRLVPVQYGSIQTEAYTDPGLRLKQVYEATGEL 55 >UniRef50_Q11J27 Putative uncharacterized protein n=1 Tax=Chelativorans sp. BNC1 RepID=Q11J27_MESSB Length = 183 Score = 60.1 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 26/183 (14%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDY 63 IL +D S G+ + S + SG I+ + + + + + + ++I Q QP + Sbjct: 3 ILALDVAS-KLGWAIHDTDKT-PSAILSGSIKLEGSNAFEKTQDMRRKLPKLIRQHQPAF 60 Query: 64 FAIEQV--FMAK------------------NADSALKLGQARGVAIVAAVNQELPVFEYA 103 A+E F+ + NA++ ++L G A + + Q +P + Sbjct: 61 AAMEAPLTFIPQFKKKTRTLMAVEEETSTINANTIMQLNWLAGAAEMVVLGQNVPCTLVS 120 Query: 104 ARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAI-T--HCHVSQNAMQM 160 R + + Q +L++ + P AD+ DA IA+ HC + ++ Sbjct: 121 PRTWQSIIPYHIRGAPKQRAKAYCDMLRIDS-PNADSRDAAVIALWCAGHCQELKLLQRV 179 Query: 161 SES 163 + Sbjct: 180 RAA 182 >UniRef50_B3FJ87 Putative uncharacterized protein n=1 Tax=Pseudomonas phage 201phi2-1 RepID=B3FJ87_9CAUD Length = 187 Score = 59.4 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 27/174 (15%) Query: 3 IILGIDPGSRVTGYGVIR------------QVGRQLSYLGSG--CIRTKVDDLPSRLKLI 48 I G DPG G + +L+ G I + RL ++ Sbjct: 12 RIAGFDPG-ANLGLTYLEDALDGSNPIVRRVETEKLNPAEYGYKEIAEVHGNRVVRLMIM 70 Query: 49 YAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQE--LPVFEYAARQ 106 Y VT+ + + +P +E ++ + A++ L + V A + + + Sbjct: 71 YDRVTQFLREVKPHGVVVEGNYLGRFANAFGSLVECVQVIRSAVYAYDPFMTLHLVDPTT 130 Query: 107 VKQTVVGIGSA---EKSQVQHMVRTLLKLP------ANPQADAADALAIAITHC 151 VK + G+ +K V+ + L L + + D++AIA + Sbjct: 131 VKTNI-GMVKIRGTDKEDVRKALSNLKSLDWDGINIDDLDEHSIDSVAIAYYYA 183 >UniRef50_A9GHB7 Crossover junction endodeoxyribonuclease ruvC n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GHB7_SORC5 Length = 182 Score = 59.0 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 I+LG DPG+ G+ + ++GSG + + P L+ + ++++++P Sbjct: 3 TIVLGFDPGAARVGWAALDVDAAGARHVGSGVLPVDLAGDPG-LEALRTAAGALLSRYRP 61 Query: 62 DYFAIEQV 69 A+E+V Sbjct: 62 ALVAVERV 69 >UniRef50_C6CX51 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CX51_PAESJ Length = 190 Score = 58.2 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 53/164 (32%), Gaps = 25/164 (15%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGR---QLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIIT 57 M +GIDP TG + + G ++ G+G + L + + +II Sbjct: 1 MVRFVGIDPA-TKTGVVALNERGDVVLEVELKGAGKAEKGGITIAQ-LVDLENQLYQIIE 58 Query: 58 QFQP-DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQT--VVG- 113 P D IEQ A + G G + L E Q K+ V G Sbjct: 59 ---PGDETVIEQ--AAAGTQKGITTGMVHGGLRSIIHRKGLVYHEINPLQTKKYVGVTGW 113 Query: 114 IGSA----------EKSQVQHMVRTLLKLPANPQADAADALAIA 147 G A +K V V+ L + DA IA Sbjct: 114 KGEAGSKVRLKDKEKKEAVGKAVQELFGYRH-KSDNVVDAYIIA 156 >UniRef50_C9DFZ6 Putative uncharacterized protein 24 n=1 Tax=Deftia phage phiW-14 RepID=C9DFZ6_9CAUD Length = 183 Score = 56.7 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 15/136 (11%) Query: 32 GCIRTKVDDLP-----SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARG 86 G I + R ++ + Q + +E + + + Sbjct: 48 GRIHIEPAPKGWAHTMERYTILSDWAMSKLKQHGVEQVYLEGYALGSTTGLVFNIAENTA 107 Query: 87 VAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKL----------PANP 136 + + + QVK+ G G+A+K + LL + P Sbjct: 108 LLKLKMWQAGIKFETPTPSQVKKFYTGNGAAKKPMMCDRFEALLGVRVSDECGCKRGDAP 167 Query: 137 QADAADALAIAITHCH 152 + D AD+ A +T Sbjct: 168 ENDIADSHANLLTGLQ 183 >UniRef50_B2D1B4 RuvC n=4 Tax=Angel-like phages RepID=B2D1B4_9CAUD Length = 196 Score = 55.9 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 52/180 (28%), Gaps = 20/180 (11%) Query: 1 MAIILGIDPGSRVTGYGV-IRQV----GRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEI 55 M + GIDP TG V + GR +G T ++I Sbjct: 1 MIAV-GIDPSLTSTGVAVLVDGKLAHYGRYGRPGQNGASYTTRSRRVR--RMIREVTKAA 57 Query: 56 ITQFQPDYFAIEQ-VFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 +T +PD F IE+ + N + E+P K V G Sbjct: 58 LTAGRPDVFVIEEHPYAVGNQGNEFDRAAIWHGIYGNLDAHEVPGVVVNNSTGKAWVTGA 117 Query: 115 GSAEKSQVQHMVRTLLKLPANP-----------QADAADALAIAITHCHVSQNAMQMSES 163 G A K V ++ +P D ADA+ A + + Sbjct: 118 GRASKEDVIAVIDDWYAGQIDPPLAKWRKTVDHPDDVADAIGYATMGAFKLGDPLPFEPK 177 >UniRef50_Q2L2F3 Phage protein n=3 Tax=Burkholderiales RepID=Q2L2F3_BORA1 Length = 217 Score = 55.5 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 16/150 (10%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGC-IRTKVDD--LPSRLKLIYAGVTEIITQFQ 60 IL +D G TGY + R+ GR + G T + + A ++ +IT Sbjct: 59 ILALDLG-TKTGYALRRRDGR----ITHGTEAFTPRASWTHGQKWQRYRAWLSRMITDHA 113 Query: 61 PDYFAIEQVFMAKNADSALKLGQARG----VAIVAAVNQELPVFEYAARQVKQTVVGIGS 116 A E V + S + A G + + A + + VK+ G G+ Sbjct: 114 VGIIAFEDV--KAHGKSGVLAAHAYGGYRAMLEMVADQHNIELVPVGVGVVKKHWTGKGN 171 Query: 117 AEKSQVQHMVRTLLKLPANPQADAADALAI 146 A+K+ + + D ADALAI Sbjct: 172 ADKAAMVAQAKAR-GYRPETDND-ADALAI 199 >UniRef50_Q1V204 Crossover junction endodeoxyribonuclease n=3 Tax=Candidatus Pelagibacter RepID=Q1V204_PELUB Length = 164 Score = 55.1 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 23/159 (14%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKL------IYAGVTEIIT 57 I+GIDPG +TG Q G + I + K IY ++ I Sbjct: 3 IIGIDPG--ITGSICFFQDG---KIID--VIEMPNMPEGKKNKKQVNGAQIYYEISSKIK 55 Query: 58 QFQPDY--FAIEQV--FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVG 113 + + IEQV + S GQ+ G+ +LP++ + K+ Sbjct: 56 DIKKEDIKVIIEQVSAMPGQGVTSMFNFGQSFGILKGICSAMQLPMYFVRPTKWKKYF-N 114 Query: 114 IGSAEKSQVQHMVRTLLK-----LPANPQADAADALAIA 147 + ++EK + + L ++ ADA+ IA Sbjct: 115 LINSEKDASRTKAIEVFPYFSSELSRKKDSNKADAILIA 153 >UniRef50_B0CCS2 Putative uncharacterized protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CCS2_ACAM1 Length = 170 Score = 50.9 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 21/149 (14%) Query: 5 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYF 64 + IDPG + G L T DL L + V QP Sbjct: 14 IAIDPGLKG-GIAFQNHQATIAKPL-----PTSGKDLD--LVTLATWVEAA----QPQLA 61 Query: 65 AIEQVFMA--KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQV 122 +E+V + S K G G + ++PV ++ K+ V+ + +K Sbjct: 62 IVEKVGAMPKQGVASTFKFGSGYGGLLGICAALQIPVELVTPQRWKRVVLAGTTKDKDAA 121 Query: 123 QHMVRTLLKLPA-------NPQADAADAL 144 R P ADAL Sbjct: 122 IAYCRRAFPDIELIQPGCRKPHDGVADAL 150 >UniRef50_UPI0001B5292B hypothetical protein PrD11_07576 n=4 Tax=Fusobacterium RepID=UPI0001B5292B Length = 261 Score = 50.1 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 12/148 (8%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ--- 60 +L ID +R G + + I+ ++DD R LI + ++ + Sbjct: 104 VLSIDLATRSVGIAY----SYKGKIVRWKTIKVELDDFRERGYLIVHYIVSVLESSKKIK 159 Query: 61 ---PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSA 117 + IE ++ N+ L + RG+ ++ + A K + Sbjct: 160 GAEINLVIIEDTYLGLNSSILAMLSEIRGMLTYNLKKLKIDLLLVPAVFWKNKFDNLPLE 219 Query: 118 EKSQVQHMV--RTLLKLPANPQADAADA 143 K Q + M+ D ADA Sbjct: 220 RKEQKEFMINKFNEFTGKVADSDDVADA 247 >UniRef50_UPI0001743ACA hypothetical protein cdivTM_35644 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743ACA Length = 64 Score = 49.7 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 96 ELPVFEYAARQVKQTVVGIGSAEKSQVQ 123 + + EY Q+K T+ G G A+K QVQ Sbjct: 2 GIKIAEYTPLQIKNTLTGYGKADKRQVQ 29 >UniRef50_A0MZD5 Gp46 n=1 Tax=Enterobacteria phage N4 RepID=A0MZD5_BPN4 Length = 185 Score = 49.4 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 22/167 (13%) Query: 4 ILGIDPGSRVTGY--GVIRQVGRQLSYLGSGCIRTKVD-DLPSR-----LKLIYAGVTEI 55 +LG+DP R G G++ LS L + TK D R ++ + Sbjct: 5 VLGVDPSFRNWGLARGMLDLETGILSGLDLKLVETKPDGTKQVRQNSKDMQAAEDITAGV 64 Query: 56 ITQFQPDYFA-IEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 I F+ +E +++A+ G G + A + E + K + GI Sbjct: 65 IDWFKEAKVIFVEVPVGSQSANGMKSYGVCVG-ILGALRALGHEIIEVTPIENKVALSGI 123 Query: 115 GSAEKSQVQHMVRTLLKLPA----------NPQADAADALAIAITHC 151 +A K + N ADA + H Sbjct: 124 KTASKDVMIRAATGFYPEANWLKDTKGRLLNKNEHLADA--VGAIHA 168 >UniRef50_D0RPS6 Crossover junction endodeoxyribonuclease n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPS6_9RICK Length = 165 Score = 48.6 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 19/157 (12%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKL------IYAGVTEII 56 I+ GIDPG + ++L + I + K + + + I Sbjct: 2 IVFGIDPGVSG---ALSIYENKKLKEV----IDMPTMSEGKKNKKQINAAQLSLEIKQRI 54 Query: 57 TQFQPDYFAIEQVFM--AKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 IE V + S GQ+ GV LP++ + K+ I Sbjct: 55 NGSSETAVVIEHVTAMPGQGVTSMFNFGQSFGVIKGICSALTLPIYFVRPVKWKKHFNLI 114 Query: 115 GSAEKSQVQHMVRTLL----KLPANPQADAADALAIA 147 GS++ + + + A+ ADA+ I Sbjct: 115 GSSKDASRTKAIELFPSFSNDMAKKKDANKADAILIG 151 >UniRef50_O68755 Putative uncharacterized protein n=15 Tax=Enterobacteriaceae RepID=O68755_YERPE Length = 195 Score = 48.2 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 31/182 (17%) Query: 2 AIILGIDPGSRVTGYGV--IRQVGRQLSYLGSGCIRTKVD----------DLPSRLKLIY 49 ++G+DP G + + +L G + TK D R I+ Sbjct: 5 IRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAGGNKKTVRVNSDDLRRANEIW 64 Query: 50 AGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQ 109 II Q E ++++ + G GV +A V + P+ + ++K Sbjct: 65 RTAKPIIEQAH--MVFCELPVGSQSSRAQTSYGICIGV--LACV--DKPLIQVTPNEIKH 118 Query: 110 TVVGIGSAEKSQVQH----------MVRTLLKLPAN---PQADAADALAIAITHCHVSQN 156 V + K ++ +R ADA+A T Q Sbjct: 119 YVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNEHLADAVASIYTGMQTDQF 178 Query: 157 AM 158 Sbjct: 179 RQ 180 >UniRef50_A8WA55 Gp67 n=1 Tax=Mycobacterium phage Giles RepID=A8WA55_9CAUD Length = 230 Score = 47.8 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 25/170 (14%) Query: 4 ILGIDPGSRVTGYGVI--RQVGRQL------SYLGSGCIRTKVDDLPSRLKLIYAGVTEI 55 ++G+D G V+ + ++ G +K DD R + + + Sbjct: 31 VVGLDLSLTSAGIAVVSDDRQADRMGVAWPWHLRCCGETGSKDDDYRRRSRRVRRQSAAV 90 Query: 56 ITQFQP----DYFAIEQVFMAKNADSAL----KLGQARGVAIVAAVNQELPVFEYAARQV 107 + +P D IE N + L A A ++++P+ + Sbjct: 91 MRLLEPAGHIDLAVIEGPIYGGNFMPSYFDRAALFHA---VYGALDSRKVPIAVISPTAG 147 Query: 108 KQTVVGIGSAEKS------QVQHMVRTLLKLPANPQADAADALAIAITHC 151 G GS K + VR L+ D ADAL +A Sbjct: 148 HVFTTGKGSLPKDPKRLKGLILDSVRALVPDVHVANDDIADALGLAFMGA 197 >UniRef50_D0MZC9 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZC9_PHYIN Length = 306 Score = 47.0 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 27/160 (16%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQF--- 59 +LG+D + TG+ ++ + GR + G I T + I V E++ Sbjct: 37 RVLGLDVNTNSTGFAIVTERGRVCRW---GHIPTAQFPSAE-VMHIGGAVDELLADVHAA 92 Query: 60 ----QPDY---FAIEQVFMAKNADS-------ALKLGQARGVAIVAAVNQELPVFEYAAR 105 QPD IE + S +L Q G+ A + + + Sbjct: 93 ELQQQPDAQWVVGIEA--FMRMFRSGRFHNAGIFQLAQLNGIVSFACWKRFDVLPLHTHP 150 Query: 106 QVKQTVVG----IGSAEKSQVQHMVRTLLKLPANPQADAA 141 + G ++K+ ++H V + L+ AA Sbjct: 151 SAARGFFGLSAPTSKSKKTSIKHQVMSFLEQQEPDLTQAA 190 >UniRef50_O80273 Holliday junction endonuclease n=13 Tax=Lactococcus phage 936 sensu lato RepID=O80273_9CAUD Length = 161 Score = 45.9 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 9/134 (6%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP-SRLKLIYAGVTEIITQF 59 M+ L ID + TGY S G I P R K+I G+TE+I + Sbjct: 1 MSKALAIDFSTSNTGYAF---RNPLTSEYVVGSIAGGKSKDPLERAKIIADGITEVIEHY 57 Query: 60 QPD--YFAIEQVFMAKNADSALKLGQARGVAIVAAV-NQELPVFEYAARQVKQT--VVGI 114 + IE+ + + + L +A G + + + + + G Sbjct: 58 NLFDYFIYIEEPIITFKSKGNISLIRANGSFLGVMRNRHNIGYVDISNSMWCSYHLIKGK 117 Query: 115 GSAEKSQVQHMVRT 128 K Q ++++ Sbjct: 118 SKLRKEQSIEILKS 131 >UniRef50_Q1WDI4 Putative uncharacterized protein n=2 Tax=root RepID=Q1WDI4_9CAUD Length = 205 Score = 45.1 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 43/156 (27%), Gaps = 21/156 (13%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 +++G+D TG GR + IR+ RL + Sbjct: 28 PLVIGLDVSLSCTGVA-----GRGWAE----AIRSGARLGHERLAFQLDAMRSYYRNA-- 76 Query: 62 DYFAIEQVFMAKNADSALK-LGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAE-- 118 + IE ++ L R +A + +P G Sbjct: 77 ELVVIEGAAFSRALQRGHDELAAIRWMARHDLWKRGIPYAVVPPDNRTIYATGRARWTGE 136 Query: 119 -----KSQVQHMVRTLLKLP--ANPQADAADALAIA 147 K +V+ V + + D ADA +A Sbjct: 137 TPAQVKGRVRDAVLQRYGVNCTGPGRYDQADASILA 172 >UniRef50_Q0GXV4 RuvC endonuclease n=1 Tax=Lactococcus phage Q54 RepID=Q0GXV4_9CAUD Length = 160 Score = 44.7 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 11/113 (9%) Query: 1 MAII-LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLP--SRLKLIYAGVTEIIT 57 M I L +D + TG+ + + +G I+ L R++ + + + Sbjct: 1 MKKITLALDISTSCTGWAYYVYDDDK---IVTGAIK-PRKSLGWRERVEQMQLDLQALTA 56 Query: 58 QFQPDYFAIEQVFMAK--NADSALKLGQARGVAIVAAVNQELPVFEYAARQVK 108 ++ +EQV K DS +KL +A G+ ++ L E+ + + Sbjct: 57 GYEIVNLVVEQVIHKKPGKVDSTIKLAKANGMLTTTLKHENL--MEFLPSEWR 107 >UniRef50_B2ZYB4 RuvC_resolvase like protein n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYB4_9CAUD Length = 200 Score = 44.7 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 7/113 (6%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRL----KLIYAGVTEIIT 57 +L DPGSR G + ++ + + + + DL +R K A + + + Sbjct: 26 IRVLSFDPGSRNFGISCVATKNGKVRVMANSIVTNPIFDL-TRFEVQKKTFLAEIGQWVE 84 Query: 58 QFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQT 110 ++P E+ + + + + + L A Q K Sbjct: 85 LYKPQALIAER--FQTRGIGGPLIEIVTTMNALVSAHFGLNTLLIVASQWKLA 135 >UniRef50_B3RGN1 Putative uncharacterized protein n=1 Tax=Escherichia phage rv5 RepID=B3RGN1_9CAUD Length = 209 Score = 44.0 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 19/127 (14%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDL----------PSRLKLIYAGV 52 +L ID T V+ G+ + + + + R+ I V Sbjct: 4 RLLSIDQSLTHTA-CVVWDDGKPVHKVVLRTQSSSAKEKKPGTVSFATAAERIDWICKQV 62 Query: 53 TEIITQFQPDYFAIEQVFMAKNADSALKLGQ-------ARGVAIVAAVNQEL-PVFEYAA 104 I D +E + D+ +L A+ N L V Sbjct: 63 RYYIHTHGVDTVVMEGLSFGSRGDATRELAGLFYGLEVMLWDALADCENDGLFKVHTVTP 122 Query: 105 RQVKQTV 111 K+ Sbjct: 123 TTAKKFA 129 >UniRef50_C5A7R7 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5A7R7_BURGB Length = 179 Score = 44.0 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%) Query: 72 AKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLK 131 N +A G Q + + + VK+ G G A K + R Sbjct: 94 HPNTIAAHVYGGFLAHLEAWCDVQRVRLVAVSVGTVKKAWTGNGKASKEAMIDEARRRGF 153 Query: 132 LPANPQADAADALAI 146 + D ADALAI Sbjct: 154 RVGAEEDDTADALAI 168 >UniRef50_C1TKV5 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKV5_9BACT Length = 153 Score = 44.0 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 24/155 (15%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYA-GVTEIITQFQPD 62 ++GIDPG + G + +G Q+ + D+P+R K I + +++ P Sbjct: 3 VVGIDPGLK----GAVAVLGDQVDVI----------DMPTRGKEIDGLSLAAYLSRVSPG 48 Query: 63 YFAIEQVFMA--KNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVV----GIGS 116 +E+V + S G+ GV + ++P E + + ++ V+ G G Sbjct: 49 LAVVEKVHSMPKQGVRSTFTFGKGVGVVLGVLQALKIPWVEVSPQAWQKAVLWGVPGEGK 108 Query: 117 AEKSQVQHMVRTLLKLPAN--PQADA-ADALAIAI 148 A + + L + D ADALA+A Sbjct: 109 ARSLLWARKIFPGVPLETPRGRKLDGRADALALAW 143 >UniRef50_Q89LL6 Blr4528 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89LL6_BRAJA Length = 158 Score = 43.2 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 18/136 (13%) Query: 1 MAIIL-GIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQF 59 M L GIDPG+ + + + ++ + + + Sbjct: 1 MTRCLLGIDPGASG---AIAFYFPSHPERVAVEDMPIAAGEVDA------VNLARRVAAM 51 Query: 60 QPDYFAIEQV--FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGS- 116 PD +E+V + S K G+A GV + LP+ + K G Sbjct: 52 APDLVFLERVNAMPGQGVSSTFKFGRAYGVVLGVIGAAALPLHLVTPAKWK----GHLRL 107 Query: 117 -AEKSQVQHMVRTLLK 131 ++K + + + L Sbjct: 108 SSDKEEARALALRLFP 123 >UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomonas RepID=A6VTC2_MARMS Length = 720 Score = 43.2 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 3 IILGIDPGSRVTG--YGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 +LG+DPG R G VI + G L G I +R + ++++I + Sbjct: 325 RVLGVDPGFRN-GVKLAVIDEQGS---LLDHGVIYPHGP--QNRTQEASTMLSQLIRKHN 378 Query: 61 PDYFAI 66 + AI Sbjct: 379 IGWVAI 384 >UniRef50_UPI000174338C hypothetical protein cdivTM_33987 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174338C Length = 50 Score = 43.2 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 33 CIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVF 70 LP RL+ IY + EII + PD ++E++F Sbjct: 3 TTPVNETPLPDRLEEIYNSLKEIIHETNPDIMSVEKLF 40 >UniRef50_Q2Z0X3 Putative uncharacterized protein n=1 Tax=Pseudomonas phage EL RepID=Q2Z0X3_9CAUD Length = 174 Score = 43.2 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 41 LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 + +R + +++++ F+PD E F+ + + +L Q + V + + Sbjct: 45 IAARSYGMARSLSQLLAIFEPDSGICEDNFLGMSPLTFKQLIQVVSLLRETFVTHGIHLS 104 Query: 101 EYAARQVKQTVVG--IGSAEKSQVQHMVRT--LLKLPAN----PQADAADALAIAI 148 R K VVG ++K V V L +AD++AI + Sbjct: 105 YLLPRLAK-AVVGADFSGSKKEDVHKGVMDYPWLDAGEIDLTVLDEHSADSVAIGL 159 >UniRef50_C3QU83 Predicted protein n=2 Tax=Bacteroides RepID=C3QU83_9BACE Length = 151 Score = 42.8 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 24/154 (15%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPD 62 I+GID G G V +L CI+ + + ++ ++ + Sbjct: 4 RIIGIDVGKNG-GIVVYDTENNRLLE----CIKMPPTP---------KDLLDFLSIYKEN 49 Query: 63 YF-AIEQV--FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTV----VGI- 114 +E+V ++A ++ G+ G + + +P + + ++T+ Sbjct: 50 SVCYLERVNGMTGQSASASFVFGEGYGHLTMGLIACGIPTVTVSPQTWQKTLGLRNTDKL 109 Query: 115 GSAE-KSQVQHMVRTLLKLPANPQADAADALAIA 147 G E K+ ++ + L A +DAL I Sbjct: 110 GKTEWKNILKKKAQQLFPYAKVTLA-TSDALLIC 142 >UniRef50_A3NLY3 Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei 668 RepID=A3NLY3_BURP6 Length = 164 Score = 42.4 bits (99), Expect = 0.007, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 17/160 (10%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR----LKLIYAGVTEII 56 M I LGIDPG R + G L R K + R + + E+I Sbjct: 1 MTIALGIDPGIRGA-LAALDHNGH-LRIADMPT-RPKQGNGKVRNEIDAAALQRQLRELI 57 Query: 57 TQFQPDYFAIEQV--FMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI 114 + +E + F + + L + V + Q GI Sbjct: 58 PADEQAIVVMEALNTFAGGSVQTMASLEATKAVIATVCELSGYTPAIVTPQCW-QRFYGI 116 Query: 115 GSA----EKSQVQHMVRTLLK---LPANPQADAADALAIA 147 + K+Q + R L P ADA IA Sbjct: 117 KRSASEDTKAQSLRLARDLYGPAFFPLAKHDGRADATLIA 156 >UniRef50_A6W8U6 Putative uncharacterized protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8U6_KINRD Length = 171 Score = 41.7 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 25/123 (20%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVD-----------DLPSRLKLIYAGV 52 ++GIDPG TG V + +Y+ I + P + I + Sbjct: 5 VVGIDPGGASTGIVV----RHRNAYVAHAVIESDKAERITYPGLEQLPAPGYIVRITEAL 60 Query: 53 TEIITQFQPDYFAIEQVFMAK----------NADSALKLGQARGVAIVAAVNQELPVFEY 102 ++ +AIE V + + LG G A V V Sbjct: 61 QDLTRGLDVRIYAIESVRAPSWHMGGAKSPMHPKDLIALGAIAGAVTGALVTTGADVMFV 120 Query: 103 AAR 105 Sbjct: 121 PPA 123 >UniRef50_A9GLQ1 Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLQ1_SORC5 Length = 163 Score = 41.7 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 16 YGVIRQVGRQLSYLGSGCIRTKVD-DLPSRLKLIYAGVTEIITQFQPDYFAIEQV-FMAK 73 + V+ + + + D P+RL +T I+ +QP A+ Sbjct: 24 WAVVDGTIDRPVLVDAKTTSAPKGWDEPARLNWYRKELTRILNLYQPRRLAVRDAEAFGP 83 Query: 74 NADSALKLGQAR--GVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQH 124 + +AR GVAI A + + V A + + +G A K + Sbjct: 84 KGRNKSLQDRARIEGVAIELAYSLGVEVQSGAMKTI-SARLGS-KAGKKHIAE 134 >UniRef50_C9RK55 Tex-like protein protein-like protein n=6 Tax=Bacteria RepID=C9RK55_FIBSS Length = 797 Score = 41.3 bits (96), Expect = 0.014, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Query: 4 ILGIDPGSRVTG--YGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 +L +DPG R TG V+ + G ++ G I+ +Y + +I ++Q Sbjct: 318 VLALDPGFR-TGCKVAVLDKNG---KFMDHGIIKPHEPWNDKAGAAVY--LMSLIDKYQI 371 Query: 62 DYFAI 66 D AI Sbjct: 372 DLIAI 376 >UniRef50_Q9PQY7 Uncharacterized protein UU157 n=10 Tax=Ureaplasma RepID=Y157_UREPA Length = 225 Score = 40.9 bits (95), Expect = 0.016, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 53/178 (29%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV---DDLPSRLKLIYAGVTEIITQFQ 60 ++GID + +TG ++R I+T D+ K +Y V +I + Sbjct: 5 VIGIDLSTTITGVAILRNE---------QIIKTFAVAFDNFNE--KNLYNNVIRLIKEIN 53 Query: 61 PDY---------FAIEQVFMAKNADSALKLGQARGVAIVA------------------AV 93 + IE + N + G+ I A Sbjct: 54 LNVWLLADDDYYIGIEVANFS-NPKLTQRFSIYAGMIIALMSQVLRDFNAEFKMFNANAW 112 Query: 94 NQELPVFEY-AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITH 150 ++P +Y R+ ++ + M++T + +N D DALAIA + Sbjct: 113 QLKIPQIQYNTLRKDRKLITKN---------LMIKT-FNIKSNLNEDEYDALAIAYFY 160 >UniRef50_A7HPW3 Putative uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPW3_PARL1 Length = 176 Score = 40.5 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 22/163 (13%) Query: 4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTK--VDDLPSRLKLIYAGVTEIITQFQP 61 ++ I P SR G+ + G G + +D R + +++ ++ P Sbjct: 12 VIAIHPTSRGFGWVLFEAPGA---IATWGVVDVSNYKEDKNRRALA---RIGKLLERYSP 65 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQ 121 +E F K A ++ + + A ++ + V Y V +G+ + + Sbjct: 66 SVLILED-FEHKPARRGARIKRLCRAMLRLAAHRGIEVRVYPRAAVNACFRSVGAKTRHE 124 Query: 122 VQHMV-------------RTLLKLPANPQADAADALAIAITHC 151 + V R L P +P+ A A+AIT+ Sbjct: 125 IAQAVALHVDALRHMLPARRRLWDPEHPRMGLFQAAALAITYY 167 >UniRef50_Q7MRD3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MRD3_WOLSU Length = 1059 Score = 40.5 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQ---LSYLGSGC 33 ILG+D G G+ ++ + G Sbjct: 4 RILGVDLGISSLGWAIVEYDKDDEAANRIIDCGV 37 >UniRef50_C9D3K7 Putative uncharacterized protein n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3K7_9RHOB Length = 148 Score = 40.5 bits (94), Expect = 0.022, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 15/119 (12%) Query: 41 LPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF 100 R + +I + +PD IE + A++ L A N+ + Sbjct: 10 DALRFSNVLQLTHGLIAKNEPDLIVIEAPIGGREANA--YLIGLVACIRGCAANRGVKCI 67 Query: 101 EYAARQVKQTVVGIG-SAE------KSQVQHMVRTLL-----KLPANPQ-ADAADALAI 146 V++ +G A K++ + ++ L+ L +P+ D ADA+A+ Sbjct: 68 TSHESTVRKHFLGKAYRAADFPTLRKAEAKKAIKRLVAQRCRSLKWDPETLDEADAMAL 126 >UniRef50_B1BZW1 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1BZW1_9FIRM Length = 1116 Score = 40.5 bits (94), Expect = 0.025, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%) Query: 1 MAI-ILGIDPGSRVTGYGVIRQVGRQLSYLGSGC 33 M +LG+D G GYGVI + + G Sbjct: 12 MGRLVLGLDIGITSVGYGVIDIDKNEF--VDYGV 43 >UniRef50_B2V842 Putative Holliday junction resolvase n=4 Tax=Hydrogenothermaceae RepID=RUVX_SULSY Length = 145 Score = 40.1 bits (93), Expect = 0.032, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ 60 M+ ILG+D G + G V G + L I ++ + ++I ++ Sbjct: 1 MSRILGLDIGLKRIGVAVSDPFGVTATPLEF--ILNDEK--------VFEKINDLIKNYK 50 Query: 61 PDYFAI 66 I Sbjct: 51 ISKIVI 56 >UniRef50_B8I085 CRISPR-associated protein, Csn1 family n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I085_CLOCE Length = 1021 Score = 39.7 bits (92), Expect = 0.043, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 1 MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGC 33 M LG+D G G+ VI + ++ LG C Sbjct: 1 MKYTLGLDVGIASVGWAVIDKDNNKIIDLGVRC 33 >UniRef50_Q20XX4 CRISPR-associated endonuclease, Csn1 family n=2 Tax=Rhodopseudomonas palustris RepID=Q20XX4_RHOPB Length = 1066 Score = 39.0 bits (90), Expect = 0.063, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 3 IILGIDPGSRVTGYGVIRQV 22 ILGID G G+GV+ Sbjct: 8 RILGIDLGIASCGWGVVDIS 27 >UniRef50_Q9EMN7 AMV162 n=2 Tax=Entomopoxvirinae RepID=Q9EMN7_AMEPV Length = 163 Score = 38.6 bits (89), Expect = 0.078, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 3 IILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQ---F 59 IIL ID G + G +I + + + + CI+ + L S +Y + I + + Sbjct: 2 IILSIDIGVKNLGLSMISLIDNKCNII---CIKENLPPLTS--CKLYNKLNNIYNKYCIY 56 Query: 60 QPDYFAIEQVFMAK 73 D IEQ F + Sbjct: 57 NVDKVIIEQQFRGR 70 >UniRef50_Q9YBJ9 Putative uncharacterized protein n=1 Tax=Aeropyrum pernix RepID=Q9YBJ9_AERPE Length = 667 Score = 38.6 bits (89), Expect = 0.082, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 16/90 (17%) Query: 2 AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 61 +I+GIDPG TG V+ GR L + SR+ I G+ +P Sbjct: 253 PVIVGIDPGIT-TGLAVLDINGRLLHA------ESSKSLDRSRVTEIVYGLG------RP 299 Query: 62 DYFAIEQVFMAKNADSALKLGQARGVAIVA 91 A++ +A ++A KL G + Sbjct: 300 VIVAVD---VADPPETAKKLAAQWGAMLYT 326 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.168 0.522 Lambda K H 0.267 0.0508 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,331,784,359 Number of Sequences: 3077464 Number of extensions: 70268390 Number of successful extensions: 173695 Number of sequences better than 1.0e-01: 246 Number of HSP's better than 0.1 without gapping: 521 Number of HSP's successfully gapped in prelim test: 94 Number of HSP's that attempted gapping in prelim test: 172289 Number of HSP's gapped (non-prelim): 635 length of query: 173 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 53 effective length of database: 671,100,676 effective search space: 35568335828 effective search space used: 35568335828 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 89 (38.6 bits)