15/01/2012 19:42:40 : INFO  : Run start: Sun Jan 15 19:42:39 GMT 2012
15/01/2012 19:42:45 : INFO  : Initialised job
15/01/2012 19:42:47 : INFO  : Renaming log file 'phyre2_20120115_194239.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/phyre_20120115_194239.log'
15/01/2012 19:42:50 : INFO  : Initialised job:
Sequence
>batch____
MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADT
VLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTMTGQSDLLKNTKETEIGGA
TGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARMESPSKDATPGNVYAQADYKI
AYE

15/01/2012 19:42:51 : INFO  : Checked sequence
15/01/2012 19:42:55 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 19:42:57 : INFO  : PSI-BLAST 3 iterations
15/01/2012 19:44:04 : INFO  : PSI-BLAST 5 iterations
15/01/2012 19:45:32 : INFO  : Finished PSI-BLAST
15/01/2012 19:45:33 : INFO  : Running Buildali to generate a3m file
15/01/2012 19:51:19 : INFO  : Converting to HMM
15/01/2012 19:51:21 : INFO  : Calibrating HMM
15/01/2012 19:51:32 : INFO  : Searching HMM database
15/01/2012 19:55:44 : INFO  : Finished buildali
15/01/2012 19:55:45 : INFO  : Predicting secondary structure
15/01/2012 19:55:51 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 19:55:54 : INFO  : Predicting Disordered regions
15/01/2012 19:55:57 : INFO  : Predicted Disorder (Disopred)
15/01/2012 19:55:58 : INFO  : Running memsat_svm check
15/01/2012 19:57:35 : INFO  : Globular protein
15/01/2012 19:57:36 : INFO  : Predicted Transmembrane (memsat_svm) ID '4e60e0e3a09aced8'
15/01/2012 19:57:37 : INFO  : Initialising fold library search
15/01/2012 19:57:39 : INFO  : Initialised search input
15/01/2012 19:57:40 : INFO  : Building Ensemble models
15/01/2012 19:57:43 : INFO  : Building hh.c2jtyA_.model.1.pdb
15/01/2012 19:57:54 : INFO  : Building hh.c3jwnK_.model.2.pdb
15/01/2012 19:58:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/hh.c3jwnK_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/c3jwnK_.1.pdb
15/01/2012 19:58:07 : INFO  : Building hh.c3jwnL_.model.3.pdb
15/01/2012 19:58:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/hh.c3jwnL_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/c3jwnL_.2.pdb
15/01/2012 19:58:18 : INFO  : Building hh.c3jwnE_.model.4.pdb
15/01/2012 19:58:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/hh.c3jwnE_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/c3jwnE_.4.pdb
15/01/2012 19:58:28 : INFO  : Building hh.c3jwnF_.model.5.pdb
15/01/2012 19:58:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/hh.c3jwnF_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/c3jwnF_.6.pdb
15/01/2012 19:58:39 : INFO  : Building hh.c2jmrA_.model.6.pdb
15/01/2012 19:58:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/hh.c2jmrA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4e60e0e3a09aced8/c2jmrA_.7.pdb
15/01/2012 19:58:49 : INFO  : Building c3jwnK_.1.pdb
15/01/2012 19:58:58 : INFO  : Building c3jwnL_.2.pdb
15/01/2012 19:59:08 : INFO  : Building c2jtyA_.3.pdb
15/01/2012 19:59:18 : INFO  : Building c3jwnE_.4.pdb
15/01/2012 19:59:27 : INFO  : Building d2j2zb1.5.pdb
15/01/2012 19:59:37 : INFO  : Building c3jwnF_.6.pdb
15/01/2012 19:59:46 : INFO  : Building c2jmrA_.7.pdb
15/01/2012 19:59:56 : INFO  : Building d2uy6b1.8.pdb
15/01/2012 20:00:06 : INFO  : Building c3bfwA_.9.pdb
15/01/2012 20:00:15 : INFO  : Building d1pdkb_.10.pdb
15/01/2012 20:00:24 : INFO  : Building c3bwuF_.11.pdb
15/01/2012 20:00:35 : INFO  : Building c1klfP_.12.pdb
15/01/2012 20:00:44 : INFO  : Building d1ze3h1.13.pdb
15/01/2012 20:00:55 : INFO  : Building c2w07B_.14.pdb
15/01/2012 20:01:06 : INFO  : Building d1n12a_.15.pdb
15/01/2012 20:01:17 : INFO  : Building c1w3gA_.16.pdb
15/01/2012 20:01:27 : INFO  : Building d2jnaa1.17.pdb
15/01/2012 20:01:37 : INFO  : Building d1p5vb_.18.pdb
15/01/2012 20:01:48 : INFO  : Building c2rivB_.19.pdb
15/01/2012 20:01:58 : INFO  : Building d1z1za1.20.pdb
15/01/2012 20:03:07 : INFO  : Finished HH model building
15/01/2012 20:03:09 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 20:03:56 : INFO  : html domain output complete ID '4e60e0e3a09aced8'
15/01/2012 20:25:58 : INFO  : Run end  : Sun Jan 15 20:25:57 GMT 2012
