BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (54 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P42625 Uncharacterized protein yhaL n=89 Tax=Enterobact... 106 2e-22 UniRef50_D2TQY7 Putative uncharacterized protein n=1 Tax=Citroba... 64 1e-09 UniRef50_B5XTV3 Putative uncharacterized protein n=4 Tax=Klebsie... 45 8e-04 UniRef50_C9XU59 Putative uncharacterized protein n=1 Tax=Cronoba... 41 0.010 UniRef50_A7MQE5 Putative uncharacterized protein n=1 Tax=Cronoba... 39 0.034 >UniRef50_P42625 Uncharacterized protein yhaL n=89 Tax=Enterobacteriaceae RepID=YHAL_ECOLI Length = 54 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/54 (100%), Positives = 54/54 (100%) Query: 1 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA Sbjct: 1 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 >UniRef50_D2TQY7 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TQY7_CITRO Length = 57 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 1/54 (1%) Query: 1 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 MSKK KK+ KP V E +++FGYEEMLSELEAI+ADAE RLAE+EATA Sbjct: 5 MSKK-NKKQASAKPCVVPETNVVSRSFGYEEMLSELEAIIADAEVRLAEEEATA 57 >UniRef50_B5XTV3 Putative uncharacterized protein n=4 Tax=Klebsiella RepID=B5XTV3_KLEP3 Length = 55 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 1 MSKKLAKKRQPVKPVVAKEPARTAK-NFGYEEMLSELEAIVADAETRLAEDEATA 54 MSKK +K+ P +P +FGY+EMLSELEAIV +AE RL ++E+ A Sbjct: 1 MSKKKNRKKASPTPSAPTQPETAGVVSFGYDEMLSELEAIVVEAEIRLRDEESLA 55 >UniRef50_C9XU59 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9XU59_CROTZ Length = 58 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/27 (70%), Positives = 24/27 (88%) Query: 26 NFGYEEMLSELEAIVADAETRLAEDEA 52 +F Y+ MLSELEAI+A+AE RLAE+EA Sbjct: 31 DFTYDCMLSELEAIIAEAEVRLAEEEA 57 >UniRef50_A7MQE5 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MQE5_ENTS8 Length = 58 Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust. Identities = 18/28 (64%), Positives = 24/28 (85%) Query: 25 KNFGYEEMLSELEAIVADAETRLAEDEA 52 + F Y+ MLSELEAI+A+AE RLAE++A Sbjct: 30 QEFTYDCMLSELEAIIAEAEVRLAEEDA 57 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TQY7 Putative uncharacterized protein n=1 Tax=Citroba... 62 7e-09 UniRef50_B5XTV3 Putative uncharacterized protein n=4 Tax=Klebsie... 61 2e-08 UniRef50_P42625 Uncharacterized protein yhaL n=89 Tax=Enterobact... 58 1e-07 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D2TQY7 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TQY7_CITRO Length = 57 Score = 61.8 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 32/51 (62%), Positives = 38/51 (74%) Query: 4 KLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 K KK+ KP V E +++FGYEEMLSELEAI+ADAE RLAE+EATA Sbjct: 7 KKNKKQASAKPCVVPETNVVSRSFGYEEMLSELEAIIADAEVRLAEEEATA 57 >UniRef50_B5XTV3 Putative uncharacterized protein n=4 Tax=Klebsiella RepID=B5XTV3_KLEP3 Length = 55 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 1 MSKKLAKKRQPVKPVVAKEPARTAK-NFGYEEMLSELEAIVADAETRLAEDEATA 54 MSKK +K+ P +P +FGY+EMLSELEAIV +AE RL ++E+ A Sbjct: 1 MSKKKNRKKASPTPSAPTQPETAGVVSFGYDEMLSELEAIVVEAEIRLRDEESLA 55 >UniRef50_P42625 Uncharacterized protein yhaL n=89 Tax=Enterobacteriaceae RepID=YHAL_ECOLI Length = 54 Score = 57.5 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 54/54 (100%), Positives = 54/54 (100%) Query: 1 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA Sbjct: 1 MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA 54 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.298 0.121 0.289 Lambda K H 0.267 0.0357 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,714,536 Number of Sequences: 3077464 Number of extensions: 3170713 Number of successful extensions: 11069 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11058 Number of HSP's gapped (non-prelim): 10 length of query: 54 length of database: 1,040,396,356 effective HSP length: 27 effective length of query: 27 effective length of database: 957,304,828 effective search space: 25847230356 effective search space used: 25847230356 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.1 bits) S2: 86 (37.9 bits)