BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (372 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 768 0.0 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 344 4e-93 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 305 1e-81 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 288 2e-76 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 286 7e-76 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 284 3e-75 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 284 3e-75 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 280 8e-74 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 278 2e-73 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 277 4e-73 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 276 9e-73 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 274 4e-72 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 271 2e-71 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 269 1e-70 UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 266 9e-70 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 266 1e-69 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 263 1e-68 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 257 4e-67 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 255 1e-66 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 253 7e-66 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 252 1e-65 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 247 5e-64 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 246 8e-64 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 246 1e-63 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 231 3e-59 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 224 5e-57 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 223 1e-56 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 223 1e-56 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 222 2e-56 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 219 2e-55 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 216 1e-54 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 212 1e-53 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 207 5e-52 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 202 2e-50 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 200 8e-50 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 194 4e-48 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 184 5e-45 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 182 2e-44 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 181 3e-44 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 172 2e-41 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 171 3e-41 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 168 3e-40 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 161 3e-38 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 158 2e-37 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 156 1e-36 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 153 9e-36 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 147 5e-34 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 147 6e-34 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 147 7e-34 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 143 8e-33 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 132 2e-29 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 130 7e-29 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 122 3e-26 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 120 5e-26 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 120 1e-25 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 119 2e-25 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 118 4e-25 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 115 2e-24 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 111 5e-23 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 108 5e-22 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 105 2e-21 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 102 2e-20 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 101 4e-20 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 101 4e-20 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 99 2e-19 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 97 1e-18 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 90 1e-16 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 86 2e-15 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 84 7e-15 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 83 1e-14 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 80 1e-13 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 65 4e-09 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 65 4e-09 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 44 0.009 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/372 (100%), Positives = 372/372 (100%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT Sbjct: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS Sbjct: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL Sbjct: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA Sbjct: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI Sbjct: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR Sbjct: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 Query: 361 QQKKDNADSRGE 372 QQKKDNADSRGE Sbjct: 361 QQKKDNADSRGE 372 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 344 bits (882), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 164/320 (51%), Positives = 225/320 (70%), Gaps = 1/320 (0%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATH 71 G++RR FMK C A MGL ++AE++ P VIW+ QECTGC+ESLLR+TH Sbjct: 16 GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQECTGCSESLLRSTH 75 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 PT+ L+L+ ISL+YHE L A G Q E++ H+++ KG+Y+LVV+G+IP K++GIYC Sbjct: 76 PTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVVEGAIPTKESGIYCK 135 Query: 132 VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGC 191 V G+ ++ ++ AA AAAII+IG+C+++GG+ + G NPTGAV +++++ K +INIPGC Sbjct: 136 VGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVRDIVKDKPIINIPGC 195 Query: 192 PPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEG 251 PP+P+N L+TV + +T+ K P+LD RP FAYGR IHEHCERRPHFDAGRFAK +GD+ Sbjct: 196 PPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPHFDAGRFAKAYGDDT 255 Query: 252 HREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN 311 H +G+CL+ LGCKGP TY NCS +F +V GVWPV++GHPC GC E + F I Sbjct: 256 HAQGYCLFKLGCKGPATYANCSVQRFNEV-GVWPVSVGHPCIGCTEPDVLFKMAIADKVQ 314 Query: 312 VENQTPRSQKPDVNAKEGGN 331 + TP V+ KE G Sbjct: 315 IHEPTPFDSYAPVDLKEKGK 334 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 140/298 (46%), Positives = 196/298 (65%), Gaps = 1/298 (0%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + + G++RRDF+K C +AA++GL AA +AE++ +R PVIW QECT CTES + Sbjct: 35 LRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQECTCCTESFI 94 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R HP ++++ ISL+YHE L A GHQ EE A+E +G Y+L V+G+IP+KD G Sbjct: 95 RTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAVEGAIPVKDGG 154 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 IYC +AG VD +++ A+ A AIIA GSC+ G V AA NPTGAV +Q+++ K +IN Sbjct: 155 IYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDKPIIN 214 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +PGCP + H++T+ + P+LD + RP YG IH+ C RR +FDAG F + F Sbjct: 215 VPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAYFDAGMFVENF 274 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 D+G +EGWCLY LGCKGP TY +CS L++ + G +P+ GHPC GC+E G + G Sbjct: 275 DDQGAKEGWCLYKLGCKGPNTYNSCSNLEW-NGGLSYPIKSGHPCIGCSEFGFWDNTG 331 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 132/289 (45%), Positives = 188/289 (65%), Gaps = 2/289 (0%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + + G++RR F+K CAA++A + L S +A ++ +R PV+W+ Q+C G TES L Sbjct: 12 LAARGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNTESFL 71 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 RA P V ++VLE ISLEYHE + A GH+ E + +E Y GQY+ +V+GSIP+ + G Sbjct: 72 RAESPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIANGG 131 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG-KTVI 186 +YC + G + + A A IA+G+C+ GG AA NPTGAV +++ +PG K +I Sbjct: 132 VYCTIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLKNLI 191 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 N+PGCP N N A + H +T+ + P D++ RP FAYG+LIH +CERR HFD+GRF + Sbjct: 192 NLPGCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRFVER 251 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 +GDEGHR GWCLY +GCKGP+T NC + + + WP+ GH C GC Sbjct: 252 WGDEGHRLGWCLYKMGCKGPQTLSNCPAVGW-NGTSYWPIGAGHGCVGC 299 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 286 bits (733), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 137/289 (47%), Positives = 197/289 (68%), Gaps = 4/289 (1%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATH 71 G++RR F+K CA + AT+ L ++ A +A ++ RP VIW+ Q+C G +E+ LR+ + Sbjct: 17 GVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDCAGDSEAFLRSRN 76 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 P+ +L+L ISL+YHE + AA G E+ + +A+ K G +++VV+GSIP G C Sbjct: 77 PSAADLILGMISLDYHETVMAASGTAAEKARDDAVAK--GGHLVVVEGSIPTGIPGA-CT 133 Query: 132 VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGC 191 + G+ D +R+A GAA II +G+CSA+GG+ AAG NPTGAV +++V+ G V+N+ GC Sbjct: 134 IGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVVNLTGC 193 Query: 192 PPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEG 251 P N N AT+ H +T+G+ P D +RP FAYG+ IH+ C+RR HFDAG FA+++GD G Sbjct: 194 PVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQWGDAG 253 Query: 252 HREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 HR GWCLY LGCKGP T+ NC +++F + G WPVA GH C GC+E G Sbjct: 254 HRNGWCLYRLGCKGPSTFHNCPSVRF-NGGTSWPVAAGHGCVGCSEPGF 301 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 132/290 (45%), Positives = 192/290 (66%), Gaps = 2/290 (0%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + GI+RR+F++ C +LAA + L A+ MAE+++ +R VIW+ QECTGCTES+ Sbjct: 18 LAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTGCTESIT 77 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R+ PT+E+L+ E ISL+YH L AA G E + A++ +G+Y+++VDGSIP+ + G Sbjct: 78 RSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIPMGNPG 137 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Y +AG D + + A+GAAAI+A+G+C+ +GG+ A NPTGAV + +++ K +IN Sbjct: 138 -YSAIAGISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKDKPIIN 196 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +PGCPP P +AH +T+G P+LD RP YG IH+ C RRP +D G+FA+ F Sbjct: 197 VPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGKFAETF 256 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 DE R GWCL+ LGCKGP TY C+T ++ D G +P+ GH C GC+E Sbjct: 257 DDEAARNGWCLFKLGCKGPVTYNACATTKWND-GTSFPIESGHGCIGCSE 305 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 138/312 (44%), Positives = 198/312 (63%), Gaps = 6/312 (1%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTES 65 ++I GI RR F K C+ A ++GL AA+ +A ++ R PVIW+ ECT C+ES Sbjct: 10 SVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLECTCCSES 69 Query: 66 LLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 +R+ HP V++ VL ISL+Y + + AA GHQ E K+KGQY+L V+G+ PL + Sbjct: 70 FIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNPPLNE 129 Query: 126 NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 G++C+ G+P V+ ++ AE A AIIA G+C++WG V AA NPT A + +V+ K + Sbjct: 130 GGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI 189 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I +PGCPP V I T+GK P+LD + RP Y + IH+ C RRPHFDAG+F + Sbjct: 190 IKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVE 249 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNEEGIGFHK 304 E+ DE R+G+CLY +GCKGP TY CST+++ GGV +P+ GH C GC+E+G + K Sbjct: 250 EWDDEAARKGYCLYKMGCKGPTTYNACSTVRW--NGGVSFPIQSGHGCIGCSEDGF-WDK 306 Query: 305 G--IHQLANVEN 314 G +L N++ Sbjct: 307 GSFYDRLTNIKQ 318 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 280 bits (715), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 142/318 (44%), Positives = 199/318 (62%), Gaps = 18/318 (5%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAE----------MAESVTNPQRPPVIWIGAQ 57 I G++RRDFMK C++LAA + + A +A+ + ++P V W+ Q Sbjct: 32 IAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPLVAWLQLQ 91 Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQ-YVLV 116 ECTGC ES LR+ TVE +VL +S+ Y+E++ AA G E+ ALE+ Q ++LV Sbjct: 92 ECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEK----ALEEVNAQDHILV 147 Query: 117 VDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSL 176 V+GSIP+KD GIYC + G+ + ++AE A+ I+A+G+C+ +G V AA NPTGAV + Sbjct: 148 VNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNPTGAVGV 207 Query: 177 QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRP 236 E++ K VIN+ GCPP AT+A+I+T GK P+LD + RP FAYG+ IH+ C RRP Sbjct: 208 DEIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHDSCPRRP 267 Query: 237 HFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 HFDAG+F + F D G REGWCLY +GCKGP T+ C +Q+ ++ WP+ GHPC GC Sbjct: 268 HFDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQW-NLKSGWPIGAGHPCIGCT 326 Query: 297 EEGI--GFHKGIHQLANV 312 E F +L NV Sbjct: 327 ERDFYDRFTPFYSKLPNV 344 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 126/291 (43%), Positives = 191/291 (65%), Gaps = 1/291 (0%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 + G RRDF+K L+A +G + + +++ +P VIW+ Q+C GCTES Sbjct: 7 IYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCAGCTESF 66 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 +R+T +++L+ ISLEYHE L + G EE K A+EKYKG+Y+L+V+GS+ ++ Sbjct: 67 IRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSVSPRNK 126 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 G+YC V+G+ V+ +++AA+ A +IA+GSC++WGG+ A NPTGAV + ++L + V+ Sbjct: 127 GVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILGDRQVV 186 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 NIPGCPP +A +A + GKPP+LD RP YG+ IH+ C RRP ++AG+ A Sbjct: 187 NIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNAGKLAGS 246 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F DE R+G+CLY LGCKGP T C+T+++ + G +P+ GHPC+GC+E Sbjct: 247 FDDESARKGYCLYKLGCKGPITRNACATIRW-NGGLSFPIQSGHPCFGCSE 296 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 130/294 (44%), Positives = 192/294 (65%), Gaps = 1/294 (0%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ G+ RR F+K C+ A +GL +E+A ++ R PV+W+ ECT C+ES Sbjct: 10 VMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGLECTCCSESF 69 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 +R+ HP V+++VL ISL+Y + L AA GHQ E + +E+YKG Y+L V+G+ PL ++ Sbjct: 70 IRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAVEGNPPLNED 129 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 G++C++ G+P VD +R AA+ A AII+ GSC++ G V AA NPT A + +V+ K +I Sbjct: 130 GMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPII 189 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 +PGCPP + +++T+GK P+LD RP Y + IH+ C RRPHFDAG+F + Sbjct: 190 KVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAGQFVES 249 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 F DEG R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+EEG Sbjct: 250 FDDEGARRGYCLYKVGCKGPTTYNACSTIRW-NEGTSFPIQAGHGCIGCSEEGF 302 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 132/288 (45%), Positives = 189/288 (65%), Gaps = 6/288 (2%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 I+RRDF K + + AT+ L +A++ R PVIWI Q+C G TE+L+R++ P Sbjct: 65 ISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGNTEALIRSSAP 124 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 TV+ L+L+ +S+EY E L AA G Q E+ +A++ +KGQY+L V+GSIP+K Y Sbjct: 125 TVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPVKME--YAFT 182 Query: 133 AG---EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIP 189 G E V +R+ A+ A A+IA+G+C+++GGV AA NPTGAV + +V+ G V+NIP Sbjct: 183 TGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSGVPVVNIP 242 Query: 190 GCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGD 249 CP NP N + + H + G P+LD RP FA+G IH++CERR HFDAG F +E+GD Sbjct: 243 ACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGEFVEEWGD 302 Query: 250 EGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 EG + +CLY +GCKGP T+ NCS +++ D G WP+ +G C GC+E Sbjct: 303 EGAKNNFCLYKMGCKGPFTFNNCSIVRYND-GTNWPIGVGRGCIGCSE 349 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 131/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ GI+RRDF+K + A +GL +A+S+ + PVIW+ Q+C G +ES+ Sbjct: 24 ILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQDCAGNSESI 83 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 LRA+ PT++ +++ ISLE+HE+L A G Q E ++ Y+G+Y+L V+GSIPL DN Sbjct: 84 LRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFVEGSIPLADN 143 Query: 127 GIYCMV--AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV----L 180 G+Y + +GE DH+ + A A AIIA+G+C+++GGV AA NPTGA + V + Sbjct: 144 GVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVDGINV 203 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 P +IN+P CP NP + + G+ P+LD RP FAY IH+ CERR HFDA Sbjct: 204 P---IINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCERRVHFDA 260 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 G F + FGD + G+CLY +GCKGP T+ NC T++F D WPV GH C GC+E G Sbjct: 261 GEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFNDTS--WPVDAGHGCIGCSEPGF 318 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 145/293 (49%), Positives = 187/293 (63%), Gaps = 4/293 (1%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ GI RRDFMK A+ A + L + A++ R PVIW+ ECTGC+ESL Sbjct: 1 MLEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESL 60 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 LR P +++L+ + ISLEYHE + AA G Q E N +A+EKYKG+YVL+V+G IP + Sbjct: 61 LRTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSS 120 Query: 127 GIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 Y V G +H R A+ AAAI AIGSCS++GGV AA NPT A L +V K Sbjct: 121 EFYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKVT-NKP 179 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VIN+PGCPP+ N + V H I +G P +D NRP +AYG IH+ CERR FDAG F Sbjct: 180 VINVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFV 239 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 +EFGDEG ++G+CLY +GCKGP T+ NCS L+F + WPV GH C GC+E Sbjct: 240 QEFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRF-NQHTSWPVQAGHGCIGCSE 291 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 133/295 (45%), Positives = 190/295 (64%), Gaps = 6/295 (2%) Query: 5 NTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTE 64 N ++ GI RRDFMK A + A++GL + A A + R P+IW+ ECTGC+E Sbjct: 76 NEVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAECTGCSE 135 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 SLLR+ P +++++ + +S+EYHE + AA G+Q E++ +A++KY G+YV++V+G IP K Sbjct: 136 SLLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIP-K 194 Query: 125 DNGIYCMV--AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 D + + +G + R A+ AAAI AIG+CS++GGV AA NPT A L +++ Sbjct: 195 DTEYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDII-D 253 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 K VIN+PGCPPN N + T+ I +G LD +RP +AYG IH+ CERR FDAG Sbjct: 254 KKVINVPGCPPNEKNIVGTLMQHILFGD-MALDAFHRPKWAYGHRIHDLCERRGRFDAGE 312 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F + FGDE + G+CLY +GCKGP T+ NCS L+F + WP+ GH C GC+E Sbjct: 313 FVQHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRF-NSHTNWPIGAGHGCIGCSE 366 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 266 bits (680), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 221/370 (59%), Gaps = 19/370 (5%) Query: 1 MTGDNTL---IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQ 57 M ++T + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI Sbjct: 99 MNNEDTFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 158 Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVV 117 ECT CTES +R++HP ++++L ISL+Y + L AA G Q E + + +Y G+Y+L V Sbjct: 159 ECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAV 218 Query: 118 DGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQ 177 +G+ PL + G++C+ +G P ++ ++KAA GA+AIIA G+C++WG V AA NPT A + Sbjct: 219 EGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 278 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 +V+ K +I +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR H Sbjct: 279 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 338 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 FDAG F + + D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC+E Sbjct: 339 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCSE 397 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLG-GVVGLVAGVSVMAVR 356 G + S+ D+ + G + +A +GL GVV AGV V AV Sbjct: 398 NGFWDRGSFY-----------SRVVDI-PQMGTHSTADTVGLTALGVVA--AGVGVHAVA 443 Query: 357 ELGRQQKKDN 366 Q+K+ N Sbjct: 444 SAVNQRKRHN 453 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 183/295 (62%), Gaps = 1/295 (0%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTES 65 TL ++RR FMK C AL A +GL ++ + P VIW+ ECTGC+ES Sbjct: 10 TLFQERRLSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGHECTGCSES 69 Query: 66 LLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 +R++ P +++L ISLEY + L+AA G +EE+ +++ G+Y+L V+G +PL + Sbjct: 70 FIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAVEGGVPLDE 129 Query: 126 NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 +G+YC V G + + +AA+GAAAII GSC++WGG+ AA NPT VS+ V+ GK + Sbjct: 130 DGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVSSVVSGKPI 189 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I +PGCPP P + H +G+ P LD + RP YG IH+ C RR FD+G F + Sbjct: 190 IKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAFFDSGLFVE 249 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 +F D+ + GWCLY +GC+GP+TY +C L++ + G +P+ GH C GC+E+G Sbjct: 250 KFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWN-GLSYPIQSGHGCIGCSEKGF 303 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/289 (44%), Positives = 181/289 (62%), Gaps = 5/289 (1%) Query: 11 HGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRAT 70 G++RRDF+K C A+A TMG+ A E+A ++T +RP V+++ ECTGC+ES+LRA Sbjct: 19 RGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTGCSESVLRAF 78 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 P ++ L+L+TISL+YHE + AA G E H A+ G ++ +V+G+IP DNGIY Sbjct: 79 QPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAIPTADNGIYG 137 Query: 131 MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTVINI 188 VA ++ A A+IA G+C+ +GGV AA NPTGA L + L G IN+ Sbjct: 138 KVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKHLGVNAINL 197 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG 248 GCPPNP+N + T+ + + P++D+ NRP +G+ +H++C R HFDAG FA F Sbjct: 198 AGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFDAGEFAPSFE 257 Query: 249 DEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 E R+GWCLY LGCKGP T NC ++F WPV GHPC GC+E Sbjct: 258 SEEARKGWCLYELGCKGPSTMNNCPKIKFNQTN--WPVEAGHPCIGCSE 304 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/306 (43%), Positives = 186/306 (60%), Gaps = 11/306 (3%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 + RR+FMK C +A MG+ A +AE++ RP V+++ ECTGCTE LLR+ P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 ++ L++E ISL+Y E + AA G +AL G YV ++G+IP + G+Y V Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTVINIPG 190 GE ++ + A GA A+IA+G+C+++GG+ AA NP+GA+ ++E L G INI G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 191 CPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDE 250 CPPNP N++ TV H++T G P +LD RP YG +H+ CERR HF+A FA F + Sbjct: 200 CPPNPVNYIGTVVHLLTKGMP-ELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 251 GHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG-----FHKG 305 REGWCL+ LGC+GP TY NC T QF V WPV G PC GC+E G F+K Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQVN--WPVRAGAPCIGCSEPGFWDALAPFNKD 316 Query: 306 IHQLAN 311 + Q ++ Sbjct: 317 VRQKSD 322 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 125/293 (42%), Positives = 181/293 (61%), Gaps = 8/293 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP---QRPPVIWIGAQECTGCTE 64 + G++RRDF+K C + A+MGLS+ ++A S+ RP V+W+ ECTGC+E Sbjct: 29 LEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLHFGECTGCSE 88 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 + LR P V ++LETIS+EYHE + AA GHQ E++ A++ +KG+++ VV+GSI Sbjct: 89 AFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFICVVEGSIATA 146 Query: 125 DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 NG Y V G ++ AA IA+G+C+A+GG+ +A NP G +++ + G Sbjct: 147 YNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAI-GVA 205 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 INI GCPPNP N L+T+ + + +LD+ RP FAY +H+ C R HF+ F Sbjct: 206 TINISGCPPNPLNLLSTIVKYLN-KETIELDELGRPLFAYAETVHDRCPRLKHFENDEFV 264 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 +EFG + G+CLYH+GCKGPETY NC T +F D G +P+ GHPC GC+E Sbjct: 265 EEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFND-GTSFPIQAGHPCIGCSE 316 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 190/296 (64%), Gaps = 11/296 (3%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSS-----KAAAEMAESVTNPQRPPVIWIGAQECTGC 62 + G++RR+F K C + + MG+++ A E+A+ + +RP VIW+ QECTGC Sbjct: 27 MERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQLQECTGC 86 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 ES +R+ + + ++VL +S+ Y E+L A G + +A+ + ++LV++GS+P Sbjct: 87 LESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIRE---PHILVINGSVP 143 Query: 123 LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 + D G+YC VAG+ + + +R AE A+ I+A+GSC+ +G + AA NPTGAV ++++L Sbjct: 144 VNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTD 203 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 +TVIN+PGCPP A + +I+T+ + P+ D ++RP AYG IH +C RR HFDAG+ Sbjct: 204 RTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPRRAHFDAGQ 263 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNE 297 F F DE RE +CLY +GCKGP+T+ C +++ GGV +P+ GHPC GC E Sbjct: 264 FVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKW--NGGVSFPIQSGHPCIGCTE 317 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/347 (40%), Positives = 209/347 (60%), Gaps = 23/347 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR--PPVIWIGAQECTGCTESLLRAT 70 I+RR+F+K + AAT+GLS ++ E+A ++ N + PPVIWI CTGC+ SLL + Sbjct: 4 ISRREFLKFASFTAATLGLS-QSVPEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSV 62 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 HP ++ ++LE I+L++H +SAA GH E EK KG++ LVV+G++P KDNG+YC Sbjct: 63 HPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYC 122 Query: 131 MVAGEP-----IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 + + + +++ E A A+IAIG+C+A+GG+ AA NPTG V + EV+ K V Sbjct: 123 SIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKV 182 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 +NIPGCPP+P F+ ++AH++ Y + PK D RP Y +IH++C RR +FD FAK Sbjct: 183 LNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAK 242 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 +F + G CL LGCKGP T+ +C T + + G W + GHPC GC E G G Sbjct: 243 DFSEPG-----CLLLLGCKGPVTHSDCPT-RLWNGGVNWCIKAGHPCIGCTEPGFPDKTG 296 Query: 306 IHQLANVENQTPRSQKPDVNAKEG--GNV--SAGAIGLLGGVVGLVA 348 + + P + P ++A G V +A AIGL ++G +A Sbjct: 297 -----PIYEKMPEIKLPGISASADTFGEVVGAATAIGLGAHLIGNIA 338 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 124/296 (41%), Positives = 180/296 (60%), Gaps = 11/296 (3%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + G+ RRDFMK C +AA MG+ A ++AE++T+ RP V+W+ ECTGC+ES+L Sbjct: 16 LEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGCSESIL 75 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R P ++ L+L+ ISL YHE L AA GH E+ + + G+YV V++G +P G Sbjct: 76 RTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVA--AGKYVAVIEGGVPTAPAG 133 Query: 128 I------YCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 + V G ++++ K E A A I G+C+++GGV A NPT + E+ P Sbjct: 134 TANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDELFP 193 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 GK +IN+PGCPPNP++ + T+ + +T G P+LD RP YG +H++C R+ F+ Sbjct: 194 GKPIINVPGCPPNPYSLVGTIVYYVTKGV-PELDSVGRPVAFYGESVHDNCPRQEFFNMD 252 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 +FA FG E R+GWCL LGC+G ETY NC T++F WPV GHPC GC++ Sbjct: 253 QFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQYN--WPVQAGHPCIGCSQ 306 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 246 bits (629), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 127/292 (43%), Positives = 182/292 (62%), Gaps = 7/292 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + GI+RRDFMK C A+A MG+ A ++A ++T +RP V+++ A ECTGC+E+LL Sbjct: 16 LERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAALTG-RRPSVVYLHAAECTGCSEALL 74 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R P ++ L+L+TISL+YHE + AA G EE A+ G ++ +V+G+IP + Sbjct: 75 RTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAIPTGMDN 133 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTV 185 Y +AG + D + A A+++IG+C+ +GG+ AA NPT A + + G Sbjct: 134 KYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA 193 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 IN+PGCPPNP N + T+ + G+ +LD+ RP +G+ +H+ CERR HFDAG FA Sbjct: 194 INVPGCPPNPLNMVGTLVAFLK-GQKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAP 252 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F E R+GWCLY +GCKGPETY NC + F + WPVA GHPC GC+E Sbjct: 253 SFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNETN--WPVAAGHPCIGCSE 302 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 182/291 (62%), Gaps = 3/291 (1%) Query: 16 RDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVE 75 +DF + + + L + + S+ + + PVIW+ +CTG +E+ ++ +PT++ Sbjct: 508 QDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCTGNSEAFIKTVNPTID 567 Query: 76 NLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV--A 133 L+L+ ISL+YHE+L AA G E +E+ +G Y+L+V+G++PL G + + Sbjct: 568 ELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQ 627 Query: 134 GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPP 193 GE +++ A+ A+A++A+GSC+ GGV AA NPTGAV + E L +IN+PGCP Sbjct: 628 GETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPV 687 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHR 253 NP N + T+ H I + + P+L D N+P +AY +H++CERR H+DAG F KE+GDEG + Sbjct: 688 NPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHYDAGEFVKEWGDEGAK 747 Query: 254 EGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 +GWCL+ +GCKGP NC+ ++F + G WPV +GH C C + + F + Sbjct: 748 KGWCLFEMGCKGPYADMNCAQMKFNE-GTSWPVQVGHGCIACGKGKVAFDE 797 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 174/294 (59%), Gaps = 2/294 (0%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 + G+ R+F+ + +G++ ++ ++ R PV+W ECT C+ESL Sbjct: 7 FLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECTCCSESL 66 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 +R++ P ++V ISLEY +++SA+ G + K +E+YKG Y+L ++GSI ++ Sbjct: 67 MRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGSITEFED 125 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 G CMV G + + +AAEGA AIIA GSC+++G V A NPT + S+ ++ K ++ Sbjct: 126 GACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTIIKNKPIV 185 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 +PGCPP P + + +++ + P LD K RP YG IH+ C R+ ++A +FA+ Sbjct: 186 KVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNANKFAER 245 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 F DEG + G CLY LGCKGP TY CS++ + + G +P+ GH C GC++EG Sbjct: 246 FDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYN-GLSFPIKSGHGCIGCSQEGF 298 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 213/369 (57%), Gaps = 13/369 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP-QRPPVIWIGAQECTG 61 G+ + + GI+RRDFMKL AA A +GL A + A++V ++PPVIW+ ECTG Sbjct: 2 GNLDFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTG 61 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ESLL +P++E+LVL+T+S+ YHE + AA GH E+ + L++ ++VLVV+GS+ Sbjct: 62 CSESLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLDE---KFVLVVEGSV 118 Query: 122 PLKD-NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG--VAAAGVNPTGAVS-LQ 177 P + YCMV G+P + + +AA A A+IA+GSC+ G A + P G LQ Sbjct: 119 PASEATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQ 178 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 + VIN+P CP P+ + T+ + +T+ P+LD++ RP YG+L+H++C RR Sbjct: 179 KHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRRGQ 238 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F+AG F ++ D ++ +CL GCKGP+TY +C+ + + D + + G PC GC+E Sbjct: 239 FEAGNFLSDWNDPAQKD-YCLLLKGCKGPKTYTDCAQVWWND-NANFCINAGSPCSGCSE 296 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 GF+ L + ++A G V GA ++G L+A V+ ++ Sbjct: 297 S--GFYGQFSPLYAKQENFSLPGLGQIHADTVGKVVGGAT-VVGLGAHLIATVASGRLKN 353 Query: 358 LGRQQKKDN 366 +QKK++ Sbjct: 354 NDSEQKKED 362 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/262 (42%), Positives = 160/262 (61%), Gaps = 7/262 (2%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 P +IW+ ECTGC+ESLLR + P +L+ + ISLEYHE +A GHQ E + LEK Sbjct: 61 PSLIWLHLSECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLEK 120 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 ++L V+G + D Y + GE + ++K A+ A I A+G+CS++GG+ AA Sbjct: 121 --KDFLLAVEGGVCAID-PFYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAA 177 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 NPT ++ + +VL K VINIPGCPP+ N +A + I + + LDD+NRP YG+ Sbjct: 178 HPNPTKSIGISKVLEEK-VINIPGCPPSDANIIAALCFYILFEQDMALDDQNRPLALYGK 236 Query: 227 LIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPV 286 +H+ CER+ F+AG FA+ F DE +EG+CL+ +GCKGP Y NC ++F + WPV Sbjct: 237 CLHDLCERKAKFEAGNFAQSFDDEKIKEGYCLFKVGCKGPYAYNNCPKVKF-NSKTSWPV 295 Query: 287 AIGHPCYGCNEEGIGFHKGIHQ 308 A GH C C+EE G ++ Sbjct: 296 AAGHGCIACSEENFWDDFGFYE 317 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/291 (38%), Positives = 174/291 (59%), Gaps = 8/291 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESV-TNPQRPPVIWIGAQECTGCTESL 66 + G++RRDF+KLC A +G+ A ++AE+ N + PVIW+ Q CTGC+ESL Sbjct: 18 LARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQGCTGCSESL 77 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 L + P E ++L+ +S+ YH L AA G Q ++ + + + G Y+LV++GSIP D+ Sbjct: 78 LSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIAQ--GHYILVLEGSIPTADS 135 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 YC V G+P ++ + AAE A A+IA+GSC+ +GG+ AG TGA QEVL G V+ Sbjct: 136 R-YCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAGF--TGAAGAQEVLEGVKVV 192 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 N+P CP P + + + +++ PKLD NRP Y +H+ C RR H++ G + ++ Sbjct: 193 NLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHYEKGEYLED 252 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 + + + WCLYH GCKG +TY NC+ + + G + G PC GC++ Sbjct: 253 WNNPDTLD-WCLYHKGCKGQDTYTNCANAWW-NGGANFCGYAGSPCAGCSQ 301 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/292 (40%), Positives = 174/292 (59%), Gaps = 16/292 (5%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRAT 70 + RRDF++LC A A +GLS+ AE+ E+ + P PPV+W+ C+GC+ SLL + Sbjct: 4 LTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLLNSV 63 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 P + ++ + ISL++H+ L AA G +Y GQY LVV+G++P+ G + Sbjct: 64 APDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVA-AGRHT 122 Query: 131 MVAGE------PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 GE P D +R+ A A A++A+G+C+A+GG+ AAGVNPT + ++ V+ G Sbjct: 123 ATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRGTP 182 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 ++N+PGCP +P L T+ H+I YG P+LD RP +G+ IH+ CERRP FD GRFA Sbjct: 183 LVNVPGCPIHPDWVLGTLLHLIRYGM-PELDKLQRPLMFFGKSIHDICERRPDFDQGRFA 241 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 K+ + G CLY LGCKGP +G+C+ +F + G W V PC C Sbjct: 242 KKLSEPG-----CLYKLGCKGPMAFGDCAERKF-NNGANWCVGANSPCLSCT 287 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 173/307 (56%), Gaps = 14/307 (4%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP-------QRPPVIWI 54 TG L+ + G++RR F+KLC A+ A G S ++A+++ + PVIWI Sbjct: 8 TGFEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPVIWI 67 Query: 55 GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV 114 CTGCTE+ + P +VLE ISL Y E LSAA G+ +EE K +E G Y+ Sbjct: 68 EGASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIEA--GNYI 125 Query: 115 LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAV 174 L+ +G++ K G VAG+P +H+ +AA A A++A+GSC+ GG A N GAV Sbjct: 126 LIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAV 185 Query: 175 SLQEVLPGK----TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHE 230 +++ L V+NIPGCP NP +A + ++ K P LD +N+P + IH+ Sbjct: 186 GVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDETIHD 245 Query: 231 HCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGH 290 +CERR HF+ G F +FG E + +CLY +GC+GP+T NC +++ + W V G Sbjct: 246 NCERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNRRS-WCVEAGA 304 Query: 291 PCYGCNE 297 PC GC E Sbjct: 305 PCIGCCE 311 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 122/293 (41%), Positives = 171/293 (58%), Gaps = 13/293 (4%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRA 69 G+ RR+F+KLC AA L + E+ ES+ +PPVIW+ CTGC+ SLL + Sbjct: 2 GLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKPPVIWLQGASCTGCSISLLNS 61 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P +E ++L+ ISL YH +SAA GH V E L +K Q++LVV+G+IPLK++G Y Sbjct: 62 VDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGKY 121 Query: 130 CMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 C +A + ++ ++ A A+IA G C+++GG+ NPTG V +++V+ K Sbjct: 122 CTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKKP 181 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VINI CP +P +FL TV +I+ YG P LD RP Y + IHE C RRP+FD+GRFA Sbjct: 182 VINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRFA 241 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 GDEG CL LGCKG Y +C + + W + G PC C+E Sbjct: 242 SFIGDEG-----CLALLGCKGFVGYADCPVRGW-NNNVNWCIKAGAPCMACSE 288 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/268 (41%), Positives = 164/268 (61%), Gaps = 8/268 (2%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + ++W+ ECTGC+ESLLRA P+ + LV + SLEYHE L AA G + EE L Sbjct: 62 KTKLVWLHLCECTGCSESLLRADLPSFDELVFDFFSLEYHETLMAANGTKAEELLEYVL- 120 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVA-GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + ++L V+G + D + A GE + + K A A AI A+G+CS++GG+ AA Sbjct: 121 --EEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAA 178 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 NP+ + EVL K V+NIPGCPP+ N +AT++ +G P+LD++NRP +AYG+ Sbjct: 179 YPNPSKTCGISEVLSQK-VVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGK 237 Query: 227 LIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPV 286 +H+ CER+ F++G FA+ F DE + G CL+ +GCKGP TY NC ++F + WPV Sbjct: 238 CLHDICERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKF-NAKTSWPV 296 Query: 287 AIGHPCYGCNEEGIGFHKGIHQ--LANV 312 A GH C C+E+ G ++ +AN+ Sbjct: 297 AAGHGCIACSEKNFWDEFGNYEKPMANI 324 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 149/249 (59%), Gaps = 8/249 (3%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGH-QVEENKH-NALEK 108 V+W+ QECTGC+ESLLR P+ E L+ + + YH+++ + GH V +H N+ EK Sbjct: 67 VVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHDLVMVSSGHGAVAALEHANSHEK 126 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 Y VL+V+GSIP+ Y + D I A A+ AIG+CS++GG+ +A Sbjct: 127 Y----VLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEAVFAIGTCSSFGGIQSAYP 182 Query: 169 NPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLI 228 NPT +L E+ + +IN+PGCPP+ N +AT+ + + + P LD RP +AY + + Sbjct: 183 NPTNGHALSEIFE-REIINVPGCPPSDKNIVATLLYYYLFAESPSLDTLKRPLWAYSKSV 241 Query: 229 HEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAI 288 H+ CER+ F AG F + F D +EG+CLY +GCKGP TY NC ++F + WPV Sbjct: 242 HDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGPYTYNNCPKVKF-NAKTSWPVQG 300 Query: 289 GHPCYGCNE 297 GH C GC+E Sbjct: 301 GHGCIGCSE 309 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/276 (38%), Positives = 160/276 (57%), Gaps = 10/276 (3%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 ++W+ ECTGC+ES LR P VE+L+LE ISLEYHE + A G ++ H+ L K Sbjct: 62 LVWLHMAECTGCSESFLRLDKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTL---K 118 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVD---HIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +++LV++G + L +N Y + +G + + A A AI AIG+CS++GGV AA Sbjct: 119 EEFILVIEGGVSLGENA-YFLTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAY 177 Query: 168 VNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRL 227 NPT + + L + ++NIPGCPP+ N + ++ + I + P D NRP ++YG+ Sbjct: 178 PNPTQSQGISTFL-RQPIVNIPGCPPSEANMIGSLMYYILLQEIPPCDSLNRPLWSYGKN 236 Query: 228 IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVA 287 +HE CER+ F++G F + F DE ++G+CLY +GCKGP NC ++F + WPV Sbjct: 237 LHEMCERKAKFESGDFVESFDDERLQDGYCLYKVGCKGPYVANNCPKVKF-NAKTSWPVR 295 Query: 288 IGHPCYGCNEEGIGFHKG-IHQLANVENQTPRSQKP 322 GH C C+E G I + N N + +KP Sbjct: 296 AGHGCIACSEPDFWDSFGKIEEPINNANAYIKDKKP 331 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 200 bits (508), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 156/254 (61%), Gaps = 9/254 (3%) Query: 48 RPP--VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 +PP ++W+ ECTGC+ S LR P +E+++LE I+LEYHE + A G +++ HN Sbjct: 57 KPPTRLVWLHLAECTGCSSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNT 116 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIV--DHIRKAAEGAAAIIAIGSCSAWGGV 163 L+K +++LV++G + L ++ + + I + ++ A+ A AI A+G+CS++GGV Sbjct: 117 LDK---EFILVIEGGVSLGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGV 173 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFA 223 AA NPT ++ + L + +INIPGCPP+ N + ++ + I + P D +RP ++ Sbjct: 174 QAAYPNPTQSIGIDSFL-SQRIINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWS 232 Query: 224 YGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV 283 YG+ +H+ CER+ F++G F + F D +G+CLY +GCKGP + NC ++F + Sbjct: 233 YGKNLHDMCERKAKFESGDFVQSFDDPHLEDGYCLYKVGCKGPYVFNNCPKVKF-NAKTS 291 Query: 284 WPVAIGHPCYGCNE 297 +P+ GH C C+E Sbjct: 292 YPIQAGHGCIACSE 305 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 184/358 (51%), Gaps = 40/358 (11%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRP-PVIWIGAQECTGCTESLLRATH 71 + RRDF++L A A + L + E + + PVIW+ C GCT S + Sbjct: 6 LTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTISTINVVS 65 Query: 72 PTVENLVLETI------SLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 PT+++L+L ++ S++YH + AA G + KG +VLV++GS+PLKD Sbjct: 66 PTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITDT--AAKGPFVLVIEGSVPLKD 123 Query: 126 NGIYCMVA-----GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 +G+Y + G +++H+ A A A++A G+CSA+GG+ A+ NPTGA ++ E+L Sbjct: 124 DGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEIL 183 Query: 181 P----GKTVINIPGCPPNPHNFLATVAHIITYG-KPPKLDDKNRPTFAYGRLIHEHCERR 235 V+N+PGCPP+P + T+A ++ G LDD RP YG+L+H+ C RR Sbjct: 184 KEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHDQCPRR 243 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 H++ G FA + E +CL+ +GCKGP TY +CS + + W V PC GC Sbjct: 244 GHYEKGLFATKL-----SEPYCLFLVGCKGPVTYADCSD-RLWNNKTRWCVEADSPCIGC 297 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVM 353 G + +P + P V + AIG+ G V L AGV+ + Sbjct: 298 AHPGFP-----------DEVSPMFEAPPVI----NSTDKLAIGIAGTAVVLTAGVAAV 340 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 166/300 (55%), Gaps = 16/300 (5%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV--TNPQRPPVIWIGAQECTGCTESLLRAT 70 + RR F++L A ++ +GL S A ++AE++ R V+W+ AQ C+GC+ S+L + Sbjct: 4 LTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISMLDSE 63 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 P L+ + ISL +H LSAA G ++++ G Y+LVV+GSIP C Sbjct: 64 SPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSVQQ--GGYILVVEGSIP-AGMPEAC 120 Query: 131 MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT----VI 186 M+ G P+ + I++AAE A +IA+G+C+A+GG+ AA NPTGAV L L +I Sbjct: 121 MMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPII 180 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 NIPGCP +P + T+ H+ +G PP D++ RP + H+ C R ++ FA++ Sbjct: 181 NIPGCPSHPDWLVGTLVHLCKFGLPP-CDEQRRPKMFFASKNHDKCPRFSDYEQENFARK 239 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 F D G CL+ LGC G TY +C T++ + G + G PC GC+ K + Sbjct: 240 FSDPG-----CLFKLGCLGVSTYADC-TIRDRNGGTNACIKAGAPCIGCSSPQFAQKKSL 293 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 109/307 (35%), Positives = 171/307 (55%), Gaps = 30/307 (9%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTN-PQRPPVIWIGAQECTGCTESLLRATH 71 ++RR+F+KLC+A A +G+S + ++T ++ PVIW+ Q CTGC+ SLL A H Sbjct: 3 LSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNAVH 62 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 P ++ ++L+ ISLE+H + A+ G + + EK+ G + L+V+G+IP G YC+ Sbjct: 63 PRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCI 122 Query: 132 VAGEPI-----------VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 V GE + ++ IR A + A +A+G+CSA+GG+ AA N TG+ S+++ Sbjct: 123 V-GETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFF 181 Query: 181 PG----KTVINIPGCPPNPHNFLATV----AHII--TYGKPPKLDDKNRPTFAYGRLIHE 230 K ++N+PGCPP+P + T+ +H++ T P+LDD RP +G IHE Sbjct: 182 ADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIHE 241 Query: 231 HCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGH 290 +C +D FA+ F G C LGCKGP TY +C+ ++ + G W V Sbjct: 242 NCPYLDKYDNSEFAETFTKPG-----CKAELGCKGPSTYADCAKRRW-NNGINWCVE-NA 294 Query: 291 PCYGCNE 297 C GC E Sbjct: 295 VCIGCVE 301 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 147/271 (54%), Gaps = 13/271 (4%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 S++A A ++ P++W+ C G SL+ HP E ++ E + + + L Sbjct: 37 STRAPEPPAADTERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLM 96 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA----GEPIV--DHIRKAA 145 A GHQ E + + G Y+LVV+G++P G Y + GEP D + + A Sbjct: 97 GAKGHQAIEVLEKVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELA 156 Query: 146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A ++A+GSC+AWG A NPTG+ + V+ +TVIN+PGCP +P L T+AH+ Sbjct: 157 AAAKHVVAVGSCAAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHL 215 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKG 265 I YG P +LD NRP YG IH C+RR +F++G FA E G E WCLY +GCKG Sbjct: 216 IWYGVP-ELDAMNRPVVFYGETIHNLCQRRHYFESGIFAGEIG-----EPWCLYKIGCKG 269 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 P TY +C + Q+C WPV PC GC Sbjct: 270 PVTYADCPSRQWCGEHMNWPVGANTPCIGCT 300 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 163/296 (55%), Gaps = 34/296 (11%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNP------QRPPVIWIGAQECTGCTESLLRATHPT 73 K C AA + K A E+ + V + R ++W+ C+G SLL +P Sbjct: 5 KTCPEYAARL----KTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPD 60 Query: 74 VENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKG----QYVLVVDGSIPLKDNGIY 129 + L+ + + Y L AA G + A+EK G +Y+L V+G++ K+NG+Y Sbjct: 61 FKYLISQMTNFLYDNSLVAAEGEK-------AMEKLMGSIGDEYILAVEGAVATKNNGMY 113 Query: 130 CMVA---GEPI--VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 ++ G+P+ ++ I+ E A+ +IA+G+C++ GGV+AA NP+ VS+Q +L + Sbjct: 114 NVIGRWQGKPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSIL-NRK 172 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VI +PGCP +P F+ T+AHI+ YG+P +LD+++RP Y LIH+ C RR FD G FA Sbjct: 173 VIKLPGCPCHPDWFMGTLAHILLYGEP-ELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFA 231 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 K+ G E C++ LGC+GP T +C ++ WPV PC GC + G Sbjct: 232 KKLG-----ESTCMFKLGCRGPVTRIDCPIRKWNQYVN-WPVEDDTPCIGCAQFGF 281 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 149/252 (59%), Gaps = 16/252 (6%) Query: 52 IWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKG 111 IW+ C+G SLL A +P + ++ ++L ++ L A G E N L+ Sbjct: 38 IWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEGEFAYEQFLNTLDT--- 94 Query: 112 QYVLVVDGSIPLKDNGIYCMVA---GEPI--VDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 +++L+VDG++ K+NG Y ++A G P+ ++ I+ A E A ++ +G+CS++GG++AA Sbjct: 95 EFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGGISAA 154 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 NP+G+ S+ V+ K VI +PGCP +P + T+AH++TYGKP +LD+K RP YG Sbjct: 155 KPNPSGSKSVDAVI-NKEVIKLPGCPCHPDWVVGTLAHLVTYGKP-ELDNKGRPILFYGI 212 Query: 227 LIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPV 286 IH+ C RR FD FAK+FG+EG C++ LGC+GP T +C ++ WP+ Sbjct: 213 TIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGPVTKTDCPRRKWNGYVN-WPI 266 Query: 287 AIGHPCYGCNEE 298 C GC +E Sbjct: 267 GDNTNCIGCAQE 278 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/298 (34%), Positives = 157/298 (52%), Gaps = 20/298 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-----TNPQRPPVIWIGAQECTGCTESLL 67 + ++D++ LC +L T G S + + E+ V N ++ PVIWI + S + Sbjct: 1 MKKKDYVNLCRSLK-TEG-SHQLSREILRVVRDFRSNNGKKLPVIWIETNDSGDNNISFM 58 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 T+P ++ + + I L Y AA G + + K ++ LVV+G+IPLK NG Sbjct: 59 NTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILKKVALREKREFTLVVEGAIPLKANG 118 Query: 128 IY--CMVAGE-PI--VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 Y + E P+ V+ +R E A +A+G+C+++GG +AA N TG+V+L +VL Sbjct: 119 RYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCASFGGASAASPNITGSVALGDVL-D 177 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 + +IN+ GCP NP F+ T+AH+ YG P LD RP Y +H HC+RR +FD G Sbjct: 178 RQIINVSGCPINPDWFVGTLAHLQMYGL-PDLDRLGRPELFYQFTVHRHCQRRSYFDDGN 236 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 FA+E GD C++ GC GP T +C + D +P+ + PC GC E Sbjct: 237 FAEELGDIE-----CMFSQGCVGPRTGADCP-YRLWDNHVSYPIKVNTPCIGCTNEDF 288 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 166/305 (54%), Gaps = 21/305 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAE---SVTNPQRPPVIWIGAQECTGCTESLLRA 69 ++RRDF+K C ++A + + A++AE + + RP +++I Q CTGC+ SL+ Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGFMKIQSADRPQLVFIQGQSCTGCSTSLMYG 61 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK--GQYVLVVDGSIPLKDNG 127 + +++ + ++ H LS + G+ N L++ G ++LV++GSIP + Sbjct: 62 NETDFIDFIMKLVRVQVHPNLSLSQGN----GYLNMLDEVTSAGGHILVLEGSIPAEMKK 117 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVS----LQEVLPGK 183 CM+ EP+ D ++K E A+A++A GSCS +GG+ A+G N TGA+ ++E K Sbjct: 118 A-CMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISK 176 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +I IPGCP +P + TVA+I+ GK P ++D P +G LIH +C R +F + Sbjct: 177 PLIKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIY 235 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNEEGIGF 302 +++ + H CL GC+G T +C+ ++ GGV V PC GC E F Sbjct: 236 LEDYAKDKHS---CLLKKGCRGTITKSDCALRRW--NGGVNVCVESNAPCVGCINEKWPF 290 Query: 303 HKGIH 307 + I+ Sbjct: 291 KENIY 295 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 156/296 (52%), Gaps = 20/296 (6%) Query: 16 RDFMKLCAALAATMGLSSKAAAEMAESVT------NPQRPPVIWIGAQECTGCTESLLRA 69 +D+MK A G K A EM + T N ++ IW+ C G SLL + Sbjct: 13 KDYMK-NVGCARGEGKPFKFAKEMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNS 71 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P + ++ +++ + + G + E + L K +Y+L+V G+IP+ +G+Y Sbjct: 72 EMPDLPFVLKNLVNMTFFGSICGDQGEKAYERILDTLNSDK-EYILLVCGAIPINADGLY 130 Query: 130 CMVA---GEPI--VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 ++A G I ++ +++AA+ A II+IG+C+ +GG AA N + A+S++E L Sbjct: 131 TVLATYQGRKITAMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRND 190 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 +INIPGCP NP L TV ++I YG LD++ RP YG+ IHE C +R FD G FA Sbjct: 191 IINIPGCPANPVWTLGTVGYLINYGT-IDLDEEGRPVAFYGKTIHEICPKRKFFDKGIFA 249 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 K+ G+ CLY LGCKGP T C ++ + WP+ PC GC +G Sbjct: 250 KKLGNPE-----CLYELGCKGPITKVYCPISRW-NQSDNWPIGDRTPCIGCARKGF 299 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 147/294 (50%), Gaps = 14/294 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRAT 70 +NRR+F+KL A S E+ +++ + + P+I + CTG + SL Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 PT+ ++ Y + + G + + ++VL+V GS+ +D G Y Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 131 MVA---GEPI--VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 G+ I +D +R+ A ++A+G C+ +GG A NPT + +Q +LP + V Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 IN+ GCP +P + T+ H+ YG+ P+L+ RP +G IH +C RR ++D G FA Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 + G + CLY +GCKGP TY +C ++ D WP+ PC GC E G Sbjct: 241 DIGQKE-----CLYRVGCKGPVTYADCPIRRWNDHYN-WPIGCNSPCIGCTEPG 288 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 16/284 (5%) Query: 28 TMGLSSKAAAEMAESVTNPQR-PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEY 86 T GLS A A + + +P+ P ++++ CTGC+ SLL+A P+ +++ + L + Sbjct: 20 TKGLSQPARAALND--IDPRTVPKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVF 77 Query: 87 HEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 H LSA G Q E ++ ++ G YVL ++G+IP C++ +P D++ +AA Sbjct: 78 HTDLSATSGAQAMELINSFIDGQAGDYVLAIEGAIP-AGMPEACIIDHKPFADYLERAAR 136 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT----VINIPGCPPNPHNFLATV 202 + +AIGSC+ GG+ AA NPTGAV L E + VINI GCP +P T+ Sbjct: 137 TMSGAVAIGSCACDGGIPAAEGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTI 196 Query: 203 AHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG 262 H++ G P ++ R F R +HE C R F FA++ GD G CL+ LG Sbjct: 197 THLVLVGNPNLVNGSPRVFFE--RRLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLG 249 Query: 263 CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 C GP T+ +C T ++ + G W V PC GC K + Sbjct: 250 CLGPITFADCPT-RWWNGGRTWCVDTNAPCIGCASPKFARQKDL 292 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 152/298 (51%), Gaps = 26/298 (8%) Query: 14 NRRDFMK------LCAALAATMGLSSKAAAEMAESVTNP-QRPPVIWIGAQECTGCTESL 66 +RR+F+K + A A + AAE E NP RP ++W+ C+GC+ SL Sbjct: 17 SRREFLKKIYRVVVAAGAAPLLSFDELLAAEGGE---NPFPRPNLVWLQGASCSGCSLSL 73 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 L TV +L+ L YH L+ A G+QV + L Y+LV++G IP Sbjct: 74 LNTEEITVLDLLTRFSRLLYHPTLAQATGNQVTD-LLTKLTTGVEPYLLVLEGGIP---A 129 Query: 127 GI--YCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 G+ C++A P + + + A+GA A +A+G+C+A+GGVAA TG VSL L + Sbjct: 130 GMPHACLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRD 189 Query: 185 V----INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 + +N+P CP P + + T+ H + + P+LD + RP + +H+ C R F Sbjct: 190 IAVPLVNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQE 249 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 FA+ G++G CL LGC+GP + +C L + + + + GHPC GC E Sbjct: 250 LDFARHIGEDG-----CLLELGCQGPVSNNDCPDLGY-NGNLNYCLKAGHPCTGCAGE 301 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 177/371 (47%), Gaps = 65/371 (17%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETIS--LEYHEV 89 S AA +A+S R ++W+ C GCT S L +P V L+++ + YH+ Sbjct: 36 SPGVAAAIADS-----RKKLLWLRGSGCGGCTASFLNGGYPDVL-AALDSVGAVITYHDG 89 Query: 90 LSAAFGHQVE-----ENKHNALEKY-----KGQYVLVVDGSIPLKDNGI--YCMVAGEPI 137 L A G ++ + +NAL+K G YVLVV+G+IP +G YC G + Sbjct: 90 LMAQQGITLDGVSKTPDTYNALKKLDLLIDSGDYVLVVEGAIPNGPDGTGKYCTTGGRAV 149 Query: 138 VDHIRKAAEGAAAIIAIGSCSAWGGVAAAG--------VNPTGAVSLQEVLP----GKTV 185 + +AAE A IIA+G+C+A+GG+++AG V TGA +L K V Sbjct: 150 KEIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAYTGASRFNGILSELNMRKKV 209 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR-LIHEHCERRPHFDAGRFA 244 IN+PGCP +P FL T+A +++ G +DD RP + + IH+ C RR +D G+ Sbjct: 210 INVPGCPAHPDWFLLTLADVLS-GAEVTVDDYRRPAAFFSKSAIHDTCTRRGSYDQGQRD 268 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAI-GHPCYGCNEEGIGFH 303 +F EG CLY GCKG TY +C ++ GGV + G PC GC Sbjct: 269 TQFAGEG-----CLYGAGCKGMITYADCPVRRW--NGGVSTCTLAGGPCVGC-------- 313 Query: 304 KGIHQLANVENQTPRSQKPDVNAKE------GGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 VE + P + P N E G NV GA +LG + L AGV + Sbjct: 314 --------VEAEFPGAFMPFFNRVEDRSLISGTNVDLGAKVILGAAI-LGAGVHAVKRLA 364 Query: 358 LGRQQKKDNAD 368 +G + + D Sbjct: 365 IGDNDNEGDGD 375 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 13/298 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR+F+K+ AALAA G+ A Q P ++++ CTGC+ SLL+A P Sbjct: 1 MDRRNFLKMAAALAAAFGVRGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAASP 60 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 T ++ + L +H LS+ G Q E + ++ G+Y L ++G++P C++ Sbjct: 61 TPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVP-GTMPRACVI 119 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TVINI 188 +P ++ +AA + +A+GSC+ GG+ AA NPTGA+ L+E + +I+I Sbjct: 120 DHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDI 179 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG 248 GCP +P T+ H++ G P ++ P + R +HE C R F FA++ G Sbjct: 180 RGCPIHPDWLWHTITHLVKVGLPSLVN--GAPQAFFQRRLHELCPRYYDFQEEIFAEKMG 237 Query: 249 DEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 + G CL+ LGC GP T+ +C T ++ + G W + PC GC K + Sbjct: 238 ERG-----CLFKLGCLGPITFADCPT-RWWNGGRTWCIDTNAPCIGCASPDFARKKDL 289 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 185/375 (49%), Gaps = 44/375 (11%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR+F+KL A+ A+ L++ A + + W+ CTGCT S ++ P Sbjct: 3 LSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSADP 62 Query: 73 TVENLVLET--------ISL-EYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 + ++ E I+L +Y E + A G EE K + + + +L+V+G++ Sbjct: 63 DLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEGAV-- 119 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG-----VNPTGAVSLQE 178 +D G +C + G+ +H+++AAE A IIA+G C+ +GG+ A NPTGA +Q+ Sbjct: 120 QDEG-FCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGVQD 178 Query: 179 VL----PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIH-EHCE 233 L KTVINIP CP +P + + T+A ++ G P+LD RP +G+ +H E C Sbjct: 179 FLYEVGINKTVINIPCCPAHPDHIIVTLASLM-LGVVPELDKYGRPKVFFGKNMHNELCP 237 Query: 234 RRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCY 293 RP++D G F + G+EG C + +GCKGP +C+ ++ + G + C Sbjct: 238 YRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNN--GTSYCVETNICI 290 Query: 294 GCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVM 353 GC E G + + + P + P V + AG +G + G+ + Sbjct: 291 GCAEPGWP-----DKFSPFYAEVP--ELPRVLGVGAETIGAGLLG------ATLLGIGIH 337 Query: 354 AVRELGRQQKKDNAD 368 AVR LG ++ K + Sbjct: 338 AVRHLGAKKHKKEEE 352 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 141/296 (47%), Gaps = 22/296 (7%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVT-NPQRPPVIWIGAQECTGCTESLLRATH 71 ++RR+F+K L +G SS E E+ RP +IW+ A C GC+ + L A Sbjct: 1 MDRREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEI 60 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQ-YVLVVDGSIPLKDNGIYC 130 P E ++ ++ +H + A+ G + + L YK +LVV+G+IP C Sbjct: 61 PVTE-ILNRFANIVFHPTIMASDGKEAMD----ILMNYKSDNMILVVEGAIPTAMPHA-C 114 Query: 131 MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT----VI 186 M+ + D I K A+ A AI+A G+C+ + G+ T A S++ L V+ Sbjct: 115 MMGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVV 174 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 N+P CP P + L T+ + I + P LD +RP + IHE C + FAK+ Sbjct: 175 NLPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKK 234 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNC--STLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GD G CL+ LGC+GP T +C ST ++ + GHPC GC E Sbjct: 235 IGDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYNCIKS---GHPCVGCGSENF 282 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 153/307 (49%), Gaps = 29/307 (9%) Query: 13 INRRDFMKLCAALAATMGLS---SKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRA 69 + RR F+K L A LS S E+ +N + ++W+ Q + CT SLL+A Sbjct: 3 LGRRGFVKALTTLGAAAFLSKYKSFIVEAFEEAKSNDVK--LVWLQGQSDSACTVSLLQA 60 Query: 70 THPTVENLVLE-TISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGI 128 P + + V E + + +H + FG + LE+ + VLV++GSIP D Sbjct: 61 ADPDLYDAVEELKVGIYFHPTVMPDFGDKA----IKVLEEIEPD-VLVLEGSIPTGDMEY 115 Query: 129 YCMVA---GEPI--VDHIRKAA-EGAAAIIAIGSCSAWGGVAAA----GVNPTGAVSLQE 178 C G+P+ V+ + + + A++ GSC+ +GG+ +A G +PT AV L + Sbjct: 116 ACTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQ 175 Query: 179 VL----PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCER 234 L P V+ +PGCP +P ++L + G LDD RP + + +LIH++C R Sbjct: 176 FLKDKKPAVPVVLLPGCPGHP-DWLLVTLAAVLLGVKVDLDDYWRPKWFFSQLIHDNCAR 234 Query: 235 RPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCY 293 R +D G FAK F + + CL+ LGC+GP TY CS ++ GGV + G PC Sbjct: 235 RGFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKWN--GGVNVCMNAGAPCI 292 Query: 294 GCNEEGI 300 GC G Sbjct: 293 GCMHPGF 299 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 51 VIWIG-AQECTGCTESLLRATHPTVENLV------LETISLEYHEVLSAAFGHQVEENKH 103 ++WI C G T S+ A+ P +E+++ L T+ L +++VLS G + Sbjct: 22 ILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHL-HNKVLSPTLGGEEFLAPF 80 Query: 104 NALEKYKGQ-YVLVVDGSIP---LKDNGIYCMVAGEP-------IVDHIRKAAEGAAAII 152 A + + + +VLV++GSIP + G + +P I I + A A A+I Sbjct: 81 RAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAWAVI 140 Query: 153 AIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT--------VINIPGCPPNPHNFLATVAH 204 AIG+C+A+GG+ A NPTG++ L + L G+ ++N+PGCP P +F+ T+ Sbjct: 141 AIGTCAAYGGIHAMAGNPTGSMGLLDYL-GRDFTSAGNLPIVNVPGCPVQPDDFMETLTW 199 Query: 205 IITYG----KPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 ++ + PP LDD++RP + +GR +HE C+R +++ G FAK++ C Sbjct: 200 LLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQVK 254 Query: 261 LGCKGPETYGNCSTLQFCDVGGVWPVA-IGHPCYGCNEEGIGFHKGIHQLANVENQTPRS 319 +GC GP NC+ + +GGV +G C C G P Sbjct: 255 IGCWGPVV--NCNVPKRGWMGGVGGCPNVGGICIACTMPGF----------------PDK 296 Query: 320 QKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAV-RELGRQQKKD 365 P ++ G ++S+ A+ G V+ + G++ V RE + +D Sbjct: 297 FMPFMDMPPGASLSSLAVKPYGSVIRRLRGITNATVNREPRWRHNRD 343 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 157/327 (48%), Gaps = 49/327 (14%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR F+K L A++ L + ++A+++ + V+W+ +GCT S+L P Sbjct: 23 MDRRTFIKAVGVLGASLFLQT-YKNDLAKALEFSETK-VVWLHGVMDSGCTISMLDGGSP 80 Query: 73 TVENLVLE-TISLEYHEVLSAAFGHQVEENKHNA------------LEKYKGQYVLVVDG 119 + + E + L YHEVL G V+ N LEK KG YVLV +G Sbjct: 81 DIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVLDDILEKEKG-YVLVSEG 139 Query: 120 SIP--LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG------VNPT 171 +I + +G Y M+ G + KAA+ A AI+AIG+C+ GGV +A ++P Sbjct: 140 AISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATNGGVNSAKSDIVELMDPR 199 Query: 172 G-AVSLQEVLPG--------KTVINIPGCPPNPHNFLATVAHIITYGK-------PPKLD 215 G A ++++ G K VIN+ GCP +P T+ ++ GK P LD Sbjct: 200 GVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAVV-LGKIKIPDDLPYVLD 258 Query: 216 DKNRPT--FAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 RP F +IH++C RR ++D G F G CL+ LGCKGP T+ +C+ Sbjct: 259 HWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPK-----CLWKLGCKGPYTHADCA 313 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGI 300 T + P A G PC GC + G Sbjct: 314 TRNWNGHLNYCPQA-GSPCIGCVQPGF 339 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 25/266 (9%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++W+ C G T S+L A+ P + + + + + L +H LS G +++ + +E Sbjct: 4 LLWLQGGACGGNTLSVLNASDPDILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIEGK 63 Query: 110 KGQYVLVVDGSIPL--KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +L+ +GSI G + M AG+P++ +R+ A A I+A+G C+++GG+ AA Sbjct: 64 INLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAAD 123 Query: 168 VNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 NPT + LQ G VIN+ GCP +P +L T +I G+ + Sbjct: 124 PNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPE-WLITTLTLILRGEMNQ 182 Query: 214 --LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 LD+ NRP Y C R+P+F KEF GH+EG + LGC+G T + Sbjct: 183 EMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEF---GHKEGCLFFDLGCRGSYTRSS 239 Query: 272 CSTLQFCDVGGVWPVAIGHPCYGCNE 297 C+ + + + +G PC GC E Sbjct: 240 CNNILWNNQSS--KTRVGTPCMGCTE 263 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 63/349 (18%) Query: 52 IWIGAQECTGCTESLLRATHPTVENLVLETIS-----LEYHEVLSAAFGHQVEENKHNAL 106 WI C GC+ + + AT P+VENL+ TI + +H VL+ G + + A Sbjct: 23 FWIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFRLAA 82 Query: 107 EKYKGQ-YVLVVDGSIPLKDNGIYCMVAGE-----------------PIVDHIRKAAEGA 148 + G +V++ +GSI D G+ G P + + +E A Sbjct: 83 KGELGAPFVVLCEGSI--MDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMSEHA 140 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL-------PGKTVINIPGCPPNPHNFLAT 201 AA++A+G+C+ WGG+ AA NPT + S+ ++L G V+NIPGC P N T Sbjct: 141 AAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNITET 200 Query: 202 VAHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257 + ++ + P+ D+ RP++ + +H C R ++ G FA+E GD+ C Sbjct: 201 IVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE-----C 255 Query: 258 LYHLGCKGPETYGNCSTLQFCD-VGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQT 316 L +GC GP N + + VGG + +G PC GC G Sbjct: 256 LVEVGCWGPVVQCNINKRGAINHVGGC--MNVGAPCIGCTMPGF---------------- 297 Query: 317 PRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKD 365 P S P G VS+ + G V + + M++ L R K D Sbjct: 298 PDSFAPFYKTPPGTMVSSNISRVTGTV---IRNLREMSMSNLNRTAKWD 343 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 169/367 (46%), Gaps = 61/367 (16%) Query: 35 AAAEMAESVTNPQRPPVI---WIGA-QECTGCTESLLRATHPTVENLVLETI----SLEY 86 A E A S Q PV+ WI A C G + +L AT P++E +VL + + Sbjct: 3 APTESAGSRPQGQEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAV 62 Query: 87 HEVLSAAFGHQVEENKHNALEKY----KGQ---YVLVVDGSIP---LKDNGIYCMV---- 132 H L F + +E + +G+ +VLVV+GSIP +K G +C Sbjct: 63 HWPL-IDFESGPMQGADVFIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNNP 121 Query: 133 -AGEPIV--DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL-------PG 182 G+P+ + + + A A A++A G+C+ +GG+ A NPTGA+ + + L G Sbjct: 122 ETGQPMTTSEWLDRLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAG 181 Query: 183 KTVINIPGCPPNPHNFLATVAHII--TYGKPP--KLDDKNRPTFAYGRLIHEHCERRPHF 238 ++N+PGCP P N T+ +++ G+ P LD+ RPT+ +G+ +HE C+R ++ Sbjct: 182 LPIVNVPGCPIQPDNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYY 241 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCD-VGGVWPVAIGHPCYGCNE 297 + G+FA E+G CL +GC GP N + + +GG +G C C Sbjct: 242 EQGQFATEYGSPK-----CLVKIGCWGPVVKCNVPKRGWMNGIGGC--PNVGGICIACTM 294 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 G P P ++ G VS+ G G V+ + G+++ V + Sbjct: 295 PGF----------------PDKFMPFMDEPPGARVSSTVSGAYGSVIRTLRGITLKTVDK 338 Query: 358 LGRQQKK 364 + +KK Sbjct: 339 EPKWRKK 345 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 151/361 (41%), Gaps = 78/361 (21%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 I+RRDF+K+ A L+ +A + ++W AQ+C G T +L++AT P Sbjct: 8 ISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTALIQATEP 67 Query: 73 TVENLVLET--------ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 + +++ + + L +HE + +G A + +VLV++GS P Sbjct: 68 DLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLEGSFPQD 127 Query: 125 DNG-------IYCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV---- 168 + YC + E V+ +R+ A A++ +G+C+++GG+ A V Sbjct: 128 EKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVANKVLERV 187 Query: 169 ----------NPTGAV---------------SLQEVLPGKTVIN---------------- 187 +PTGAV +L E P + I Sbjct: 188 PGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEIRPDCRP 247 Query: 188 ---IPGCPPNPHNFLATVAHIITYGK----PPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 +PGCP N + L +A ++ + K P+LD RP F +G +HE C R + A Sbjct: 248 AMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPRAGSYAA 307 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNEEG 299 G F G+ +R CLY +GCKGP + NC + V GV P G C GC G Sbjct: 308 GDFRAYPGENSYR---CLYAVGCKGPIS--NCPWNKLGWVNGVGGPTRTGGVCIGCTMPG 362 Query: 300 I 300 Sbjct: 363 F 363 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/294 (27%), Positives = 129/294 (43%), Gaps = 34/294 (11%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKY 109 V+W+ C+G T S L A PTV +LV + +++ +H + G QV ++ + Sbjct: 4 VLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSGR 63 Query: 110 KGQYVLVVDGSIPLKDNGIYCM--VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +LV +GSI NG M A P+ D +R ++ ++AIG C+ WGG+ A Sbjct: 64 TQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAVA 123 Query: 168 VNPTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIITYGK--P 211 NP+ + +Q + K VINIPGCP +P +++ + I G+ Sbjct: 124 PNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHP-DWITQILVAIATGRIGD 182 Query: 212 PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 +D+ +RP + + C F K G G R G Y +GC+GP T + Sbjct: 183 VLIDEYHRPKTFFTDFVQTGCTNVVSFA----QKVDGGFGKRGGCLFYEVGCRGPMTRAS 238 Query: 272 CSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH--------KGIHQLANVENQTP 317 C+ + + HPC GC E G H K +H L + +TP Sbjct: 239 CNRILWNRQSS--KTRANHPCLGCTEPGFPHHDLEKGSVFKTMHYLGFLPKETP 290 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 99/359 (27%), Positives = 160/359 (44%), Gaps = 68/359 (18%) Query: 29 MGLSSKAAAEMAESVTNPQRPP---------VIWIGA-QECTGCTESLLRATHPTVENLV 78 +G+ + A AE V P+R P ++WI A C G + +L AT P++E + Sbjct: 31 LGVGAAARERPAEQVA-PERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIA 89 Query: 79 LETI----SLEYHEVLSAAFGHQVEENKHNALEKYK-------GQYVLVVDGSIP---LK 124 L + + H L F E+ LE ++ +VLVV+GSIP + Sbjct: 90 LGALPGLPKVAVHWPL-IDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERIN 148 Query: 125 DNGIYC-----MVAGEPIVDH--IRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQ 177 +G + G+PI + + + A A A++A+G+C+ +GG+ A NPTGA+ + Sbjct: 149 GDGYWTGFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVP 208 Query: 178 EVL-------PGKTVINIPGCPPNPHNFLATVAHII--TYGKPP--KLDDKNRPTFAYGR 226 + L G ++ +PGCP P N T+ +++ G+ P LDD+ RP + +G Sbjct: 209 DYLGWDWKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGT 268 Query: 227 LIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCD-VGGVWP 285 +H+ C+R ++ GRFA +G+ CL LGC GP N + + VGG Sbjct: 269 TVHDGCDRAGFYEEGRFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMNGVGGC-- 321 Query: 286 VAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVV 344 +G C C G P P ++ G VS+G + G V+ Sbjct: 322 PNVGGICIACTMPGF----------------PDRFMPFMDTPPGAKVSSGLSTVYGKVI 364 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 26/247 (10%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 VIWI A C GCT S L + + E ++ EYH + + N LE K Sbjct: 7 VIWIDAVTCYGCTHSFLNYKEISS---LFEKVNFEYHPLFLS-----------NDLE-IK 51 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP 170 +L+V+G+ LK+N G + + I K A ++A+G+C+ +GG+ G+ Sbjct: 52 QCDLLIVEGA--LKNNY---PRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMY 106 Query: 171 TGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHE 230 +IN+PGCPP+P +++A V +I+ K LDD NRP + H Sbjct: 107 NKEQKGHYYKCRDKIINLPGCPPHP-DWIAFVLDMISENKKIALDDLNRPKDIFAYTSHM 165 Query: 231 HCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGH 290 C R +F+ A+ FG +EG Y GC+GP T+ +C+ + + +V P A G Sbjct: 166 GCTRNEYFEWKIDAENFGT---KEGCLFYFQGCQGPFTHSSCNKVLWNEVSSK-PRA-GT 220 Query: 291 PCYGCNE 297 PC+GC E Sbjct: 221 PCFGCTE 227 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/283 (31%), Positives = 129/283 (45%), Gaps = 30/283 (10%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTV-ENLVLETISLEYHEVLSAAFGHQVE 99 ++ P R ++W+ + C GC+ SLL A P + L L I + H LS A G Sbjct: 16 DATGRPARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYH 75 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM----VAGEPIVDHIRKAAEGAAAIIAIG 155 L + +L V+G+I NG G+P++ + + A A +IAIG Sbjct: 76 ALIARILSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIG 135 Query: 156 SCSAWGGVAAAGVNPTGA--VSLQEVLPGKTV------------INIPGCPPNPHNFLAT 201 SC+A+GGV+AAG N T A ++ + PG + INI GCP +P + T Sbjct: 136 SCTAYGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVET 195 Query: 202 VAHI--ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 + + T+ LD RP F L+H C R ++ AKE G G CL Sbjct: 196 LVQLGDGTFSA-SDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEPGQLG-----CLM 249 Query: 260 -HLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 HLGC G + +G+C+ + G + G+PC GC E G Sbjct: 250 EHLGCIGTQVHGDCNMRAWNGEGSC--IRGGYPCIGCTEPTFG 290 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 113/431 (26%), Positives = 172/431 (39%), Gaps = 112/431 (25%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 I RRDF++ + AA L+ A + A ++W AQ+C G T ++++AT P Sbjct: 4 ITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQATDP 63 Query: 73 TVENLVL--------ETISLEYHEVLSAAFG-HQVEENKHNALEKY-------------- 109 ++ +++L T+ L +HE + +G + V++ A EK Sbjct: 64 SLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPPGDA 123 Query: 110 -----------KGQYVLVVDGSIPL----------KDNGIYCMVAGEPIVDHIRKAAEGA 148 G YVLV++GS P ++ G YC+V + ++ A Sbjct: 124 MKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLLNNA 183 Query: 149 AAIIAIGSCSAWGGVAAAGV--------------NPTGAVSL------------------ 176 A++A+G+C+A+GG+ A V +PTGA+ Sbjct: 184 LAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQPYFQ 243 Query: 177 QEVLPGKTVIN---------------IPGCPPNPHNFLATVAHIIT----YGKPPKLDDK 217 E+ P + I+ +PGCP N + L T+A + Y KP L+ K Sbjct: 244 PEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVLERK 303 Query: 218 ------NRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 RP F + +HE C R + AG F G +G CL+ +GCKGP + N Sbjct: 304 AFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRP---TPGAGDGKCLFEVGCKGPIS--N 358 Query: 272 CSTLQFCDVGGV-WPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGG 330 C + V GV P G C GC GF N PR PD A G Sbjct: 359 CPWNKVGWVSGVGGPTRTGGVCIGCTMP--GFTDAYEPFWAPLN-APR--LPDTTAIAVG 413 Query: 331 NVSAGAIGLLG 341 + A+G LG Sbjct: 414 VGTGVALGALG 424 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 29/262 (11%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P ++W+ + C G T S L HP + + +L L +H VL +A+ + N ++ Sbjct: 6 KPKLLWLQSITCNGNTHSFL--NHPELFS-ILSHFELVHHPVLESAYTLE------NVIK 56 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +L+V+G+ K+ G + +G + ++K A+ A II+ G+C+ +GG+ Sbjct: 57 GEVPCDLLIVEGA--FKEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGGIFKEN 112 Query: 168 VNPTGAVSL----QEVLP-----GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 +P +E P +I++PGCP +P +L+ + +I G LD + Sbjct: 113 -DPEEISGFCFDGEEKTPRYESYASKLISLPGCPIHP-RWLSYLLLMIASGNKVPLDTLH 170 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFC 278 RP YG +H C R +F+ AK+FG +EG Y GC+GP T G+C+ + + Sbjct: 171 RPVELYGYTVHTGCTRNEYFEWKIDAKQFGV---KEGCLFYEQGCQGPYTRGSCNKILWN 227 Query: 279 DVGGVWPVAIGHPCYGCNEEGI 300 D +G PC+GC E G Sbjct: 228 DTSS--KTRVGTPCFGCTEPGF 247 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 118/261 (45%), Gaps = 26/261 (9%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 ++WI C+G ++S L +PTV + E I+L +H +S + + + + Sbjct: 4 LLWIQGLTCSGNSQSFLCGENPTVSDFFSE-INLLWHPEIS--YSEDIMDILNGIYRDEI 60 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP 170 L+++G++ N + + I I K A IIA+G+C+ G A NP Sbjct: 61 KLDFLIIEGAV--TSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGNYPAL-YNP 117 Query: 171 TGAVSLQEVLPGKT--------------VINIPGCPPNPHNFLATVAHIITYGKPPKLDD 216 +Q L GK VINI GCP +P TV ++YG KLD Sbjct: 118 DQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVL-TLSYGLDLKLDS 176 Query: 217 KNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ 276 +NRP Y L H+ C R +F+ A+EFG +EG Y LGC+GP T+ C+ + Sbjct: 177 QNRPKELYMYLSHDGCTRNEYFEWKVEAEEFGT---KEGCLFYELGCRGPVTHAPCNRIL 233 Query: 277 FCDVGGVWPVAIGHPCYGCNE 297 + G G PC GC E Sbjct: 234 W--NGRSSKTRAGMPCIGCTE 252 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 23/259 (8%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 ++WI C G + S L + + T+ ++ L I++ YH +L++ + ++ L + Sbjct: 11 LVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHPMLTSEM--EFKDVYKLLLSGKE 67 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP 170 LVV+G++ K + ++ G + + + + + I+A+G+C+ +G A Sbjct: 68 SLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACYGNFPALYNEN 125 Query: 171 TGAVSLQ------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 + + + G +INI GCP +P + T+ + +G KLD+ N Sbjct: 126 VKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILSL-NFGYDIKLDNLN 184 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFC 278 RP Y L H+ C R +F+ A EFG +EG Y LGC+GP T+ C+ + + Sbjct: 185 RPKDFYMYLAHDGCIRNEYFEWKVEAHEFGT---KEGCLFYELGCRGPLTHSPCNKILWN 241 Query: 279 DVGGVWPVAIGHPCYGCNE 297 + G PC GC E Sbjct: 242 EKSS--KTRSGMPCIGCTE 258 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 26/265 (9%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLE-TISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++W+ C G + ++L A P++E L+ +I L +H LS +++ L Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 110 KGQYVLVVDGSIPL--KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +L V+GSI + G+Y G ++ +R A A A++A+G+C+A+GG+ AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 168 VNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 NP+ LQ G VIN+ GCP +PH T+A + + Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQTLAALAAGLP-LE 182 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL-YHLGCKGPETYGNC 272 LD +RP + ++H+ C R + + + E G + C+ ++LGC+GP T C Sbjct: 183 LDAIHRPVSHFSTMVHQGCTRNEYHE---YNIEDSTPGGKA--CMFFNLGCQGPLTRAVC 237 Query: 273 STLQFCDVGGVWPVAIGHPCYGCNE 297 +T + V G PC+GC Sbjct: 238 NTDLWNGVSSK--TRAGVPCFGCTS 260 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 73/271 (26%), Positives = 121/271 (44%), Gaps = 28/271 (10%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKY 109 V+WI + C GC+ SLL A ++ I + +H LS G + + + L+ Sbjct: 19 VLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQILEDCLQGR 78 Query: 110 KGQYVLVVDGSIPLKDNGI--YCMVAGE--PIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + L V+G++ +G + ++AG P+++ + + A A +A+G+C+A+GG+ A Sbjct: 79 VALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGTCAAYGGITA 138 Query: 166 AGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFL-ATVAHIITYGK 210 G NPT A LQ G VIN+ GCP +P A Sbjct: 139 GGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDALALLSARLLT 198 Query: 211 PPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY-HLGCKGPETY 269 LD RP F +L+H C R +++ A++ D G C+ ++GCKG + + Sbjct: 199 ASDLDTLGRPRFYADQLVHHGCTRNEYYEFKASAEKPSDLG-----CMMENMGCKGTQAH 253 Query: 270 GNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 +C+T + G G+ C C E G Sbjct: 254 ADCNTRLWNGEGSC--TRGGYACISCTEPGF 282 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 121/260 (46%), Gaps = 30/260 (11%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ ++W+ A C G T S L +P +E L+ YH V+ + + ++E N + Sbjct: 3 KKMRILWLSAITCNGNTHSFL--NYPHMEQF-LDDFEFIYHPVIDSKYS--LQEIVSNEI 57 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA-- 164 E VL+++G+I + G PI + I+ ++ I+ +G+C+ +GG+ Sbjct: 58 E----CEVLIIEGAISEEFQR-----GGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRE 108 Query: 165 -----AAGVNPTGAVSLQEV--LPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDK 217 AG++ +L KT I+I GCP +P + T+ + I ++D+ Sbjct: 109 SDYKDTAGMHFDQDRALHNFSDFLDKT-ISISGCPIHPEVLVNTL-YAIKKSVLLRVDNF 166 Query: 218 NRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQF 277 RP Y +H C R +F+ +FG+ EG Y GC+ P T+G+C+ + + Sbjct: 167 LRPKEFYAYTVHNGCTRNEYFEYKVDNHKFGE---LEGCMFYDHGCQAPFTHGSCNKILW 223 Query: 278 CDVGGVWPVAIGHPCYGCNE 297 +V G PC+GC E Sbjct: 224 NEVNS--KTRAGVPCFGCTE 241 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/354 (25%), Positives = 136/354 (38%), Gaps = 105/354 (29%) Query: 12 GINRRDFMKL--CAALAATMGLSSKAAAEMAESVTNPQRP-PVIWIGAQECTGCTESLLR 68 G+ RRDF+K+ AL ++ LS + E+ +P ++W G C G T + + Sbjct: 2 GLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFID 61 Query: 69 ATHPTVENLV-------------------LETISLEYHEVLSAAFGHQVEENKHNALEKY 109 A +P+VE++V L I+L YH +L + AL Sbjct: 62 AMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMPQ-DNMAYATMEMALNGE 120 Query: 110 KGQYVLVVDGSIPLKDNGIY---------CMVAGEP------IVDHIRKAAEGAAAIIAI 154 +VLVV+G++ + G+Y C +P + + + AAA++A Sbjct: 121 LDPFVLVVEGTM-FDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVAT 179 Query: 155 GSCSAWGGVAAAG-----VNPTGAVSL--------------------QEVLP-------- 181 G+C+ +GG+ A +PT A+ + Q++ P Sbjct: 180 GACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIY 239 Query: 182 ----------------------GKTVINIPGCPPNPHNFLATVAHIITY----GKPP--K 213 G +I+I PP + T+ + Y G P Sbjct: 240 SVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADD 299 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPE 267 LD NRP F YG H++C R F G FA EFGD C Y LGCKG E Sbjct: 300 LDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKGTE 348 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 122/299 (40%), Gaps = 36/299 (12%) Query: 39 MAESVTNPQRP----PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAA 93 M + V +RP + W+ C G T S L + P + L I + YH LS Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLS-- 118 Query: 94 FGHQVEENKHNALEKYK-GQY---VLVVDGSIPL--KDNGIYCMVAGEPIVDHIRKAAEG 147 + + +H+ LE G+ +LVV+G++ G+Y P D + A Sbjct: 119 --NTSQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQ 176 Query: 148 AAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG------------KTVINIPGCPPNP 195 A ++A G+C+A+GG A + PG V+N+ GCP +P Sbjct: 177 ARFVVAAGTCAAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHP 236 Query: 196 HNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREG 255 L++V + G L NRP YG ++H+ C R + + FG++G Sbjct: 237 Q-VLSSVLTALATGAELPLAPLNRPLPWYGMMVHQGCTRNEYHEYRVEEDNFGEKG---- 291 Query: 256 WCL-YHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVE 313 CL +H+GC GP G C+ L + G PC+GC + N+E Sbjct: 292 -CLFFHMGCHGPLVTGPCNKLLWNQRSS--KTRAGVPCFGCTSPEFPQDHAFFETRNIE 347 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGK----PPKLDDKNRPTFAYGRLIHEHCERRPHF 238 K + +PGCP N + L T+ ++I + K P+LD RP +G +HE C R + Sbjct: 335 KPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNEKY 394 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNE 297 AG E G G CL+ +GCKGP + NC + V GV P G C GC Sbjct: 395 RAGILRSE---PGEPSGACLFSVGCKGPIS--NCPYNKIGWVNGVGGPTRTGGVCIGCTM 449 Query: 298 EGI 300 G Sbjct: 450 PGF 452 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 19/154 (12%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR F+KL A L + A + ++W AQ+C G T SL++AT P Sbjct: 6 LSRRQFLKLAGTTALLASLDWRKLIRRAFAELETGGISLVWFEAQDCAGDTTSLIQATEP 65 Query: 73 -TVENLVLET-------ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP-- 122 VE L T + L +HE + +G + AL YVL+++G++P Sbjct: 66 DIVEVLAGLTNLTPPGAVVLPFHETVMPEWGFGSIAHLLLALGGVYDPYVLILEGAMPPD 125 Query: 123 -----LKDNGIYCMVAGEPIV----DHIRKAAEG 147 +K + C + V + +R+ EG Sbjct: 126 EDLTGIKGTNMLCYIGDYETVMESLEKLRRVVEG 159 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F G + + DE R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRW-NRGTSFPIQAGHGCIGCSE 238 Query: 298 EGI 300 EG Sbjct: 239 EGF 241 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 43.9 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWI 54 ++ GI RR FMK C+ AA +GL ++A ++ R PVIW+ Sbjct: 10 VMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWV 57 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 538 e-151 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 448 e-124 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 437 e-121 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 435 e-120 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 435 e-120 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 434 e-120 UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 434 e-120 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 432 e-119 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 428 e-118 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 425 e-118 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 425 e-117 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 422 e-116 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 420 e-116 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 415 e-114 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 414 e-114 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 411 e-113 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 411 e-113 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 393 e-108 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 392 e-107 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 391 e-107 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 390 e-107 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 386 e-106 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 386 e-106 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 385 e-105 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 383 e-105 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 382 e-104 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 378 e-103 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 372 e-101 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 371 e-101 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 369 e-101 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 366 e-100 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 361 2e-98 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 361 3e-98 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 359 1e-97 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 358 3e-97 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 357 3e-97 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 357 4e-97 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 353 4e-96 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 349 9e-95 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 338 3e-91 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 321 2e-86 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 320 4e-86 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 320 6e-86 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 319 8e-86 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 316 7e-85 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 313 8e-84 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 313 9e-84 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 308 2e-82 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 307 3e-82 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 304 3e-81 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 304 5e-81 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 302 1e-80 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 300 4e-80 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 299 1e-79 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 299 1e-79 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 299 2e-79 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 296 1e-78 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 291 3e-77 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 285 2e-75 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 284 3e-75 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 279 1e-73 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 276 9e-73 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 266 8e-70 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 262 1e-68 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 260 7e-68 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 258 3e-67 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 258 3e-67 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 257 5e-67 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 254 5e-66 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 250 8e-65 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 238 2e-61 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 145 2e-33 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 106 2e-21 Sequences not found previously or not previously below threshold: UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13... 90 1e-16 UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub... 88 7e-16 UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni... 86 2e-15 UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax... 83 2e-14 UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 78 4e-13 UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 78 6e-13 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 76 2e-12 UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 74 6e-12 UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ... 73 2e-11 UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 68 5e-10 UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco... 68 8e-10 UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=... 67 1e-09 UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax... 67 1e-09 UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 66 2e-09 UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag... 66 2e-09 UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta... 66 2e-09 UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni... 66 3e-09 UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 65 4e-09 UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F... 64 7e-09 UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v... 64 8e-09 UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 64 9e-09 UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 63 1e-08 UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni... 63 1e-08 UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ... 62 3e-08 UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 61 4e-08 UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 61 5e-08 UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T... 61 8e-08 UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu... 60 1e-07 UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T... 60 1e-07 UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 60 1e-07 UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo... 60 1e-07 UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 60 1e-07 UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s... 60 1e-07 UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=... 60 1e-07 UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 60 2e-07 UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam... 60 2e-07 UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ... 59 2e-07 UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ... 59 2e-07 UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI 59 3e-07 UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l... 58 4e-07 UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c... 58 5e-07 UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 58 7e-07 UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 57 1e-06 UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni... 57 1e-06 UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=... 56 1e-06 UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 56 2e-06 UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R... 56 3e-06 UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta... 55 4e-06 UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 55 4e-06 UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 55 6e-06 UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 55 6e-06 UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=... 55 7e-06 UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit... 54 7e-06 UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l... 54 9e-06 UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=... 53 2e-05 UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n... 53 2e-05 UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 53 3e-05 UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=... 52 3e-05 UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 52 3e-05 UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 52 4e-05 UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 51 7e-05 UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 51 1e-04 UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 50 1e-04 UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch... 49 2e-04 UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 49 2e-04 UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID... 49 3e-04 UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c... 48 5e-04 UniRef50_P80510 Cytochrome c3 hydrogenase small chain (Fragment)... 48 7e-04 UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria... 48 8e-04 UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ... 48 8e-04 UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 9e-04 UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep... 47 9e-04 UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch... 47 9e-04 UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 9e-04 UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 9e-04 UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 9e-04 UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=... 47 0.001 UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 47 0.001 UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c... 47 0.001 UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 47 0.001 UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 47 0.001 UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri... 46 0.001 UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S... 46 0.002 UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm... 46 0.002 UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax... 46 0.002 UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.002 UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T... 46 0.002 UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 46 0.002 UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 46 0.003 UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni... 46 0.003 UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 46 0.003 UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 46 0.003 UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy... 45 0.003 UniRef50_P13062 Periplasmic [NiFe] hydrogenase small subunit (Fr... 45 0.003 UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma... 45 0.004 UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=... 45 0.004 UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=... 45 0.004 UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr... 45 0.004 UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 45 0.004 UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta... 45 0.004 UniRef50_P13064 Periplasmic [NiFeSe] hydrogenase small subunit (... 45 0.005 UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni... 45 0.005 UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F... 45 0.005 UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=... 45 0.005 UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 45 0.005 UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=... 45 0.005 UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta... 45 0.006 UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 45 0.007 UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono... 45 0.007 UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 44 0.008 UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 44 0.008 UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmone... 44 0.009 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 44 0.009 UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N... 44 0.011 UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni... 43 0.013 UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=... 43 0.013 UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 43 0.015 UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=... 43 0.015 UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T... 43 0.015 UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B... 43 0.015 UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl... 43 0.016 UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr... 43 0.016 UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax... 43 0.017 UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 43 0.017 UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=... 43 0.017 UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I... 43 0.019 UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=... 43 0.019 UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F... 43 0.020 UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax... 43 0.020 UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 43 0.025 UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c... 43 0.025 UniRef50_UPI0001854780 quinone-reactive Ni/Fe hydrogenase HydA n... 42 0.029 UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 42 0.032 UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 42 0.044 UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 42 0.046 UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B... 41 0.064 UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 41 0.071 UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 41 0.071 UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 41 0.096 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 372/372 (100%), Positives = 372/372 (100%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT Sbjct: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS Sbjct: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL Sbjct: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA Sbjct: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI Sbjct: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR Sbjct: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 Query: 361 QQKKDNADSRGE 372 QQKKDNADSRGE Sbjct: 361 QQKKDNADSRGE 372 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 151/369 (40%), Positives = 222/369 (60%), Gaps = 5/369 (1%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 + + G++RRDF+K C +AA++GL AA +AE++ +R PVIW QECT CT Sbjct: 31 FYQYLRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQECTCCT 90 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ES +R HP ++++ ISL+YHE L A GHQ EE A+E +G Y+L V+G+IP+ Sbjct: 91 ESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAVEGAIPV 150 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 KD GIYC +AG VD +++ A+ A AIIA GSC+ G V AA NPTGAV +Q+++ K Sbjct: 151 KDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDK 210 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +IN+PGCP + H++T+ + P+LD + RP YG IH+ C RR +FDAG F Sbjct: 211 PIINVPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAYFDAGMF 270 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 + F D+G +EGWCLY LGCKGP TY +CS L++ + G +P+ GHPC GC+E G + Sbjct: 271 VENFDDQGAKEGWCLYKLGCKGPNTYNSCSNLEW-NGGLSYPIKSGHPCIGCSEFGFWDN 329 Query: 304 KGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQK 363 G + ++ P + A A+G + AG+S + +++ RQ+ Sbjct: 330 TGGTSMYAHLSEVPGLKI----GVNVDAFGAAAVGAAIAGAAVHAGLSAVTKKQMDRQEN 385 Query: 364 KDNADSRGE 372 + N ++ E Sbjct: 386 EKNCKNKVE 394 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 139/362 (38%), Positives = 206/362 (56%), Gaps = 10/362 (2%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 + + I+RRDF K + + AT+ L +A++ R PVIWI Q+C G T Sbjct: 56 FDEYLSMWDISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGNT 115 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 E+L+R++ PTV+ L+L+ +S+EY E L AA G Q E+ +A++ +KGQY+L V+GSIP+ Sbjct: 116 EALIRSSAPTVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPV 175 Query: 124 KDNGIYCMVAG-EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 K + E V +R+ A+ A A+IA+G+C+++GGV AA NPTGAV + +V+ G Sbjct: 176 KMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSG 235 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 V+NIP CP NP N + + H + G P+LD RP FA+G IH++CERR HFDAG Sbjct: 236 VPVVNIPACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGE 295 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 F +E+GDEG + +CLY +GCKGP T+ NCS +++ D G WP+ +G C GC+E Sbjct: 296 FVEEWGDEGAKNNFCLYKMGCKGPFTFNNCSIVRYND-GTNWPIGVGRGCIGCSEPDFWD 354 Query: 303 HKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQ 362 + + P P + E G L + G+ AV + Sbjct: 355 KYATERPVAASDIRP----PAIGGVESTVDKVGLTILTATAI----GIGAHAVMSALAGK 406 Query: 363 KK 364 K+ Sbjct: 407 KE 408 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 133/313 (42%), Positives = 191/313 (61%), Gaps = 1/313 (0%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 ++I GI RR F K C+ A ++GL AA+ +A ++ R PVIW+ ECT C+ Sbjct: 8 FYSVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLECTCCS 67 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ES +R+ HP V++ VL ISL+Y + + AA GHQ E K+KGQY+L V+G+ PL Sbjct: 68 ESFIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNPPL 127 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 + G++C+ G+P V+ ++ AE A AIIA G+C++WG V AA NPT A + +V+ K Sbjct: 128 NEGGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNK 187 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +I +PGCPP V I T+GK P+LD + RP Y + IH+ C RRPHFDAG+F Sbjct: 188 PIIKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQF 247 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 +E+ DE R+G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+E+G Sbjct: 248 VEEWDDEAARKGYCLYKMGCKGPTTYNACSTVRW-NGGVSFPIQSGHGCIGCSEDGFWDK 306 Query: 304 KGIHQLANVENQT 316 + Q Sbjct: 307 GSFYDRLTNIKQF 319 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 130/304 (42%), Positives = 193/304 (63%), Gaps = 1/304 (0%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 ++ G+ RR F+K C+ A +GL +E+A ++ R PV+W+ ECT C+ Sbjct: 7 FYEVMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGLECTCCS 66 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ES +R+ HP V+++VL ISL+Y + L AA GHQ E + +E+YKG Y+L V+G+ PL Sbjct: 67 ESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAVEGNPPL 126 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 ++G++C++ G+P VD +R AA+ A AII+ GSC++ G V AA NPT A + +V+ K Sbjct: 127 NEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDK 186 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +I +PGCPP + +++T+GK P+LD RP Y + IH+ C RRPHFDAG+F Sbjct: 187 PIIKVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAGQF 246 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 + F DEG R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+EEG Sbjct: 247 VESFDDEGARRGYCLYKVGCKGPTTYNACSTIRWNE-GTSFPIQAGHGCIGCSEEGFWDK 305 Query: 304 KGIH 307 + Sbjct: 306 GSWY 309 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 165/332 (49%), Positives = 229/332 (68%), Gaps = 2/332 (0%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + + + G++RR FMK C A MGL ++AE++ P VIW+ QECT Sbjct: 6 MKKEEDFLCA-GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQECT 64 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GC+ESLLR+THPT+ L+L+ ISL+YHE L A G Q E++ H+++ KG+Y+LVV+G+ Sbjct: 65 GCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVVEGA 124 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 IP K++GIYC V G+ ++ ++ AA AAAII+IG+C+++GG+ + G NPTGAV +++++ Sbjct: 125 IPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVRDIV 184 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 K +INIPGCPP+P+N L+TV + +T+ K P+LD RP FAYGR IHEHCERRPHFDA Sbjct: 185 KDKPIINIPGCPPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPHFDA 244 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GRFAK +GD+ H +G+CL+ LGCKGP TY NCS +F +VG VWPV++GHPC GC E + Sbjct: 245 GRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVG-VWPVSVGHPCIGCTEPDV 303 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNV 332 F I + TP V+ KE G Sbjct: 304 LFKMAIADKVQIHEPTPFDSYAPVDLKEKGKG 335 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 219/369 (59%), Gaps = 17/369 (4%) Query: 1 MTGDNTL---IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQ 57 M ++T + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI Sbjct: 99 MNNEDTFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGL 158 Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVV 117 ECT CTES +R++HP ++++L ISL+Y + L AA G Q E + + +Y G+Y+L V Sbjct: 159 ECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAV 218 Query: 118 DGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQ 177 +G+ PL + G++C+ +G P ++ ++KAA GA+AIIA G+C++WG V AA NPT A + Sbjct: 219 EGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPID 278 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 +V+ K +I +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR H Sbjct: 279 KVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAH 338 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 FDAG F + + D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC+E Sbjct: 339 FDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCSE 397 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 G + S+ D+ + G + +A +GL V AGV V AV Sbjct: 398 NGFWDRGSFY-----------SRVVDI-PQMGTHSTADTVGLTALGVV-AAGVGVHAVAS 444 Query: 358 LGRQQKKDN 366 Q+K+ N Sbjct: 445 AVNQRKRHN 453 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 143/349 (40%), Positives = 203/349 (58%), Gaps = 8/349 (2%) Query: 5 NTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTE 64 N ++ GI RRDFMK A + A++GL + A A + R P+IW+ ECTGC+E Sbjct: 76 NEVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAECTGCSE 135 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 SLLR+ P +++++ + +S+EYHE + AA G+Q E++ +A++KY G+YV++V+G IP K Sbjct: 136 SLLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIP-K 194 Query: 125 DNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 D + + G + R A+ AAAI AIG+CS++GGV AA NPT A L +++ Sbjct: 195 DTEYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDII-D 253 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 K VIN+PGCPPN N + T+ I +G LD +RP +AYG IH+ CERR FDAG Sbjct: 254 KKVINVPGCPPNEKNIVGTLMQHILFGDM-ALDAFHRPKWAYGHRIHDLCERRGRFDAGE 312 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 F + FGDE + G+CLY +GCKGP T+ NCS L+F + WP+ GH C GC+E Sbjct: 313 FVQHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRF-NSHTNWPIGAGHGCIGCSEPHFWD 371 Query: 303 HKGIH--QLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAG 349 L N R D A G V GA + +++G Sbjct: 372 TMSPFEVPLGNRYQTAFRGAGADHTADRVGMVILGATAIGIAAHAMLSG 420 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 133/316 (42%), Positives = 187/316 (59%), Gaps = 5/316 (1%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 ++ GI+RRDF+K + A +GL +A+S+ + PVIW+ Q+C G Sbjct: 20 NIEKILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQDCAGN 79 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 +ES+LRA+ PT++ +++ ISLE+HE+L A G Q E ++ Y+G+Y+L V+GSIP Sbjct: 80 SESILRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFVEGSIP 139 Query: 123 LKDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV- 179 L DNG+Y + GE DH+ + A A AIIA+G+C+++GGV AA NPTGA + V Sbjct: 140 LADNGVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVD 199 Query: 180 LPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD 239 +IN+P CP NP + + G+ P+LD RP FAY IH+ CERR HFD Sbjct: 200 GINVPIINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCERRVHFD 259 Query: 240 AGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 AG F + FGD + G+CLY +GCKGP T+ NC T++F D WPV GH C GC+E G Sbjct: 260 AGEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFND--TSWPVDAGHGCIGCSEPG 317 Query: 300 IGFHKGIHQLANVENQ 315 G + VE Sbjct: 318 FVDKFGSFEKPFVEEN 333 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 425 bits (1094), Expect = e-118, Method: Composition-based stats. Identities = 132/306 (43%), Positives = 196/306 (64%), Gaps = 2/306 (0%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + GI+RR+F++ C +LAA + L A+ MAE+++ +R VIW+ QECTGCTES+ Sbjct: 18 LAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTGCTESIT 77 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R+ PT+E+L+ E ISL+YH L AA G E + A++ +G+Y+++VDGSIP+ + G Sbjct: 78 RSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIPMGNPG 137 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Y +AG D + + A+GAAAI+A+G+C+ +GG+ A NPTGAV + +++ K +IN Sbjct: 138 -YSAIAGISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKDKPIIN 196 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +PGCPP P +AH +T+G P+LD RP YG IH+ C RRP +D G+FA+ F Sbjct: 197 VPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGKFAETF 256 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIH 307 DE R GWCL+ LGCKGP TY C+T ++ D G +P+ GH C GC+E + Sbjct: 257 DDEAARNGWCLFKLGCKGPVTYNACATTKWND-GTSFPIESGHGCIGCSEPKFWDAGPFY 315 Query: 308 QLANVE 313 + ++ Sbjct: 316 KALSMP 321 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 23/348 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR--PPVIWIGAQECTGCTESLLRAT 70 I+RR+F+K + AAT+GLS E+A ++ N + PPVIWI CTGC+ SLL + Sbjct: 4 ISRREFLKFASFTAATLGLSQSV-PEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSV 62 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 HP ++ ++LE I+L++H +SAA GH E EK KG++ LVV+G++P KDNG+YC Sbjct: 63 HPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYC 122 Query: 131 MVAGEP-----IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 + + + +++ E A A+IAIG+C+A+GG+ AA NPTG V + EV+ K V Sbjct: 123 SIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKV 182 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 +NIPGCPP+P F+ ++AH++ Y + PK D RP Y +IH++C RR +FD FAK Sbjct: 183 LNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAK 242 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 +F + G CL LGCKGP T+ +C T + + G W + GHPC GC E G G Sbjct: 243 DFSEPG-----CLLLLGCKGPVTHSDCPTRLW-NGGVNWCIKAGHPCIGCTEPGFPDKTG 296 Query: 306 IHQLANVENQTPRSQKPDVNAKEGG----NVSAGAIGLLGGVVGLVAG 349 + + P + P ++A +A AIGL ++G +A Sbjct: 297 -----PIYEKMPEIKLPGISASADTFGEVVGAATAIGLGAHLIGNIAT 339 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 186/306 (60%), Gaps = 1/306 (0%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTES 65 TL ++RR FMK C AL A +GL ++ + P VIW+ ECTGC+ES Sbjct: 10 TLFQERRLSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGHECTGCSES 69 Query: 66 LLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 +R++ P +++L ISLEY + L+AA G +EE+ +++ G+Y+L V+G +PL + Sbjct: 70 FIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAVEGGVPLDE 129 Query: 126 NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 +G+YC V G + + +AA+GAAAII GSC++WGG+ AA NPT VS+ V+ GK + Sbjct: 130 DGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVSSVVSGKPI 189 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I +PGCPP P + H +G+ P LD + RP YG IH+ C RR FD+G F + Sbjct: 190 IKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAFFDSGLFVE 249 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 +F D+ + GWCLY +GC+GP+TY +C L++ + G +P+ GH C GC+E+G + Sbjct: 250 KFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWN-GLSYPIQSGHGCIGCSEKGFWDNDV 308 Query: 306 IHQLAN 311 ++ Sbjct: 309 FYKRLP 314 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 420 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 202/338 (59%), Gaps = 6/338 (1%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 + G RRDF+K L+A +G + + +++ +P VIW+ Q+C GCTES Sbjct: 7 IYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCAGCTESF 66 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 +R+T +++L+ ISLEYHE L + G EE K A+EKYKG+Y+L+V+GS+ ++ Sbjct: 67 IRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSVSPRNK 126 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 G+YC V+G+ V+ +++AA+ A +IA+GSC++WGG+ A NPTGAV + ++L + V+ Sbjct: 127 GVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILGDRQVV 186 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 NIPGCPP +A +A + GKPP+LD RP YG+ IH+ C RRP ++AG+ A Sbjct: 187 NIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNAGKLAGS 246 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 F DE R+G+CLY LGCKGP T C+T+++ + G +P+ GHPC+GC+E I Sbjct: 247 FDDESARKGYCLYKLGCKGPITRNACATIRW-NGGLSFPIQSGHPCFGCSEPNFWDRGFI 305 Query: 307 HQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVV 344 + +V + G + A+G + Sbjct: 306 YSPLSVVEGGFGWK-----GILAGVATGVALGAASAAI 338 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 136/312 (43%), Positives = 192/312 (61%), Gaps = 4/312 (1%) Query: 5 NTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTE 64 + + G++RR F+K CAA++A + L S +A ++ +R PV+W+ Q+C G TE Sbjct: 9 EERLAARGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNTE 68 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 S LRA P V ++VLE ISLEYHE + A GH+ E + +E Y GQY+ +V+GSIP+ Sbjct: 69 SFLRAESPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIA 128 Query: 125 DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG-K 183 + G+YC + G + + A A IA+G+C+ GG AA NPTGAV +++ +PG K Sbjct: 129 NGGVYCTIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLK 188 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +IN+PGCP N N A + H +T+ + P D++ RP FAYG+LIH +CERR HFD+GRF Sbjct: 189 NLINLPGCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRF 248 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 + +GDEGHR GWCLY +GCKGP+T NC + + WP+ GH C GC Sbjct: 249 VERWGDEGHRLGWCLYKMGCKGPQTLSNCPAVGWNGT-SYWPIGAGHGCVGCMSPRFWDT 307 Query: 304 KG--IHQLANVE 313 +L NVE Sbjct: 308 MSPFYERLPNVE 319 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 132/308 (42%), Positives = 184/308 (59%), Gaps = 5/308 (1%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 G + G++RRDF+K C A+A TMG+ A E+A ++T +RP V+++ ECTGC Sbjct: 11 GAEERLARRGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTGC 70 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 +ES+LRA P ++ L+L+TISL+YHE + AA G E H A+ G ++ +V+G+IP Sbjct: 71 SESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAIP 129 Query: 123 LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP- 181 DNGIY VA ++ A A+IA G+C+ +GGV AA NPTGA L + L Sbjct: 130 TADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKH 189 Query: 182 -GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 G IN+ GCPPNP+N + T+ + + P++D+ NRP +G+ +H++C R HFDA Sbjct: 190 LGVNAINLAGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFDA 249 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 G FA F E R+GWCLY LGCKGP T NC ++F WPV GHPC GC+E Sbjct: 250 GEFAPSFESEEARKGWCLYELGCKGPSTMNNCPKIKFNQ--TNWPVEAGHPCIGCSEPDF 307 Query: 301 GFHKGIHQ 308 K Sbjct: 308 WDEKSPFY 315 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 157/362 (43%), Positives = 207/362 (57%), Gaps = 10/362 (2%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ GI RRDFMK A+ A + L + A++ R PVIW+ ECTGC+ESL Sbjct: 1 MLEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESL 60 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 LR P +++L+ + ISLEYHE + AA G Q E N +A+EKYKG+YVL+V+G IP + Sbjct: 61 LRTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSS 120 Query: 127 GIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 Y V G +H R A+ AAAI AIGSCS++GGV AA NPT A L +V K Sbjct: 121 EFYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKV-TNKP 179 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VIN+PGCPP+ N + V H I +G P +D NRP +AYG IH+ CERR FDAG F Sbjct: 180 VINVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFV 239 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 +EFGDEG ++G+CLY +GCKGP T+ NCS L+F WPV GH C GC+E Sbjct: 240 QEFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRFNQ-HTSWPVQAGHGCIGCSEPDFWDTM 298 Query: 305 GIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKK 364 G E G + +A IG+ + GV+ AV + + K+ Sbjct: 299 G-----PFEEPVANRLYATAFDGLGADKTADKIGIT-LLAATAVGVAAHAVLSMMVKDKE 352 Query: 365 DN 366 +N Sbjct: 353 NN 354 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 215/361 (59%), Gaps = 5/361 (1%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + G++RR F+K CA + AT+ L ++ A +A ++ RP VIW+ Q+C G +E+ L Sbjct: 13 LADAGVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDCAGDSEAFL 72 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R+ +P+ +L+L ISL+YHE + AA G E+ + +A+ KG +++VV+GSIP G Sbjct: 73 RSRNPSAADLILGMISLDYHETVMAASGTAAEKARDDAVA--KGGHLVVVEGSIPTGIPG 130 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 C + G+ D +R+A GAA II +G+CSA+GG+ AAG NPTGAV +++V+ G V+N Sbjct: 131 -ACTIGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVVN 189 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 + GCP N N AT+ H +T+G+ P D +RP FAYG+ IH+ C+RR HFDAG FA+++ Sbjct: 190 LTGCPVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQW 249 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIH 307 GD GHR GWCLY LGCKGP T+ NC +++F + G WPVA GH C GC+E G Sbjct: 250 GDAGHRNGWCLYRLGCKGPSTFHNCPSVRF-NGGTSWPVAAGHGCVGCSEPGFWDTMSPF 308 Query: 308 QLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNA 367 T + G ++A A G VG V V A RE + Sbjct: 309 YDRLPHVATSGFDLT-ADRIGVGVLAATATGFAAHGVGKVVQHRVAARREKQAARDLVED 367 Query: 368 D 368 D Sbjct: 368 D 368 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 181/304 (59%), Gaps = 8/304 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ---RPPVIWIGAQECTGCTE 64 + G++RRDF+K C + A+MGLS+ ++A S+ RP V+W+ ECTGC+E Sbjct: 29 LEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLHFGECTGCSE 88 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 + LR P V ++LETIS+EYHE + AA GHQ E++ A++ +KG+++ VV+GSI Sbjct: 89 AFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFICVVEGSIATA 146 Query: 125 DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 NG Y V G ++ AA IA+G+C+A+GG+ +A NP G +++ + G Sbjct: 147 YNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAI-GVA 205 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 INI GCPPNP N L+T+ + + +LD+ RP FAY +H+ C R HF+ F Sbjct: 206 TINISGCPPNPLNLLSTIVKYLNK-ETIELDELGRPLFAYAETVHDRCPRLKHFENDEFV 264 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 +EFG + G+CLYH+GCKGPETY NC T +F D G +P+ GHPC GC+E Sbjct: 265 EEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFND-GTSFPIQAGHPCIGCSEPDFWDTM 323 Query: 305 GIHQ 308 Sbjct: 324 TPFY 327 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 183/308 (59%), Gaps = 7/308 (2%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 G + GI+RRDFMK C A+A MG+ A ++A ++T +RP V+++ A ECTGC Sbjct: 11 GGEERLERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAALT-GRRPSVVYLHAAECTGC 69 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 +E+LLR P ++ L+L+TISL+YHE + AA G EE A+ G ++ +V+G+IP Sbjct: 70 SEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAIP 128 Query: 123 LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP- 181 + Y +AG + D + A A+++IG+C+ +GG+ AA NPT A + + Sbjct: 129 TGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYAD 188 Query: 182 -GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 G IN+PGCPPNP N + T+ + G+ +LD+ RP +G+ +H+ CERR HFDA Sbjct: 189 LGVKAINVPGCPPNPLNMVGTLVAFLK-GQKIELDEVGRPVMFFGQSVHDLCERRKHFDA 247 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 G FA F E R+GWCLY +GCKGPETY NC + F + WPVA GHPC GC+E Sbjct: 248 GEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNE--TNWPVAAGHPCIGCSEPNF 305 Query: 301 GFHKGIHQ 308 Sbjct: 306 WDDMTPFY 313 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 125/322 (38%), Positives = 181/322 (56%), Gaps = 11/322 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 G + G+ RRDFMK C +AA MG+ A ++AE++T+ RP V+W+ ECTGC Sbjct: 11 GAVERLEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGC 70 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 +ES+LR P ++ L+L+ ISL YHE L AA GH E+ + + G+YV V++G +P Sbjct: 71 SESILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVA--AGKYVAVIEGGVP 128 Query: 123 LKDNGIYC------MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSL 176 G V G ++++ K E A A I G+C+++GGV A NPT + Sbjct: 129 TAPAGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGV 188 Query: 177 QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRP 236 E+ PGK +IN+PGCPPNP++ + T+ + +T G P+LD RP YG +H++C R+ Sbjct: 189 DELFPGKPIINVPGCPPNPYSLVGTIVYYVTKGV-PELDSVGRPVAFYGESVHDNCPRQE 247 Query: 237 HFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 F+ +FA FG E R+GWCL LGC+G ETY NC T++F WPV GHPC GC+ Sbjct: 248 FFNMDQFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQYN--WPVQAGHPCIGCS 305 Query: 297 EEGIGFHKGIHQLANVENQTPR 318 + + Sbjct: 306 QPNFWDGEDWDGKTYFYADLTD 327 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 203/354 (57%), Gaps = 20/354 (5%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAE----------MAESVTNPQRPPVIWIGAQ 57 I G++RRDFMK C++LAA + + A +A+ + ++P V W+ Q Sbjct: 32 IAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPLVAWLQLQ 91 Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVV 117 ECTGC ES LR+ TVE +VL +S+ Y+E++ AA G E+ ++LVV Sbjct: 92 ECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEKALEEV---NAQDHILVV 148 Query: 118 DGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQ 177 +GSIP+KD GIYC + G+ + ++AE A+ I+A+G+C+ +G V AA NPTGAV + Sbjct: 149 NGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNPTGAVGVD 208 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 E++ K VIN+ GCPP AT+A+I+T GK P+LD + RP FAYG+ IH+ C RRPH Sbjct: 209 EIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHDSCPRRPH 268 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 FDAG+F + F D G REGWCLY +GCKGP T+ C +Q+ G WP+ GHPC GC E Sbjct: 269 FDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQWNLKSG-WPIGAGHPCIGCTE 327 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVS 351 + ++ P + G L+ G V + AG++ Sbjct: 328 RDF-----YDRFTPFYSKLPNV-TGFGIEATAEQIGWGMTALVAGGVAVHAGIT 375 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 134/369 (36%), Positives = 214/369 (57%), Gaps = 13/369 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP-QRPPVIWIGAQECTG 61 G+ + + GI+RRDFMKL AA A +GL A + A++V ++PPVIW+ ECTG Sbjct: 2 GNLDFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTG 61 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ESLL +P++E+LVL+T+S+ YHE + AA GH E+ + L++ ++VLVV+GS+ Sbjct: 62 CSESLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLDE---KFVLVVEGSV 118 Query: 122 PLKD-NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG-GVAAA-GVNPTGAVSL-Q 177 P + YCMV G+P + + +AA A A+IA+GSC+ G G+ A + P G L Q Sbjct: 119 PASEATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQ 178 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 + VIN+P CP P+ + T+ + +T+ P+LD++ RP YG+L+H++C RR Sbjct: 179 KHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRRGQ 238 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F+AG F ++ D ++ +CL GCKGP+TY +C+ + + D + + G PC GC+E Sbjct: 239 FEAGNFLSDWNDPAQKD-YCLLLKGCKGPKTYTDCAQVWWND-NANFCINAGSPCSGCSE 296 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 G + L + ++A G V GA ++G L+A V+ ++ Sbjct: 297 SGF--YGQFSPLYAKQENFSLPGLGQIHADTVGKVVGGAT-VVGLGAHLIATVASGRLKN 353 Query: 358 LGRQQKKDN 366 +QKK++ Sbjct: 354 NDSEQKKED 362 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 179/320 (55%), Gaps = 2/320 (0%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + G+ R+F+ + +G++ ++ ++ R PV+W ECT Sbjct: 1 METYYDFLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECT 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 C+ESL+R++ P ++V ISLEY +++SA+ G + K +E+YKG Y+L ++GS Sbjct: 61 CCSESLMRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGS 119 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 I ++G CMV G + + +AAEGA AIIA GSC+++G V A NPT + S+ ++ Sbjct: 120 ITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTII 179 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 K ++ +PGCPP P + + +++ + P LD K RP YG IH+ C R+ ++A Sbjct: 180 KNKPIVKVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNA 239 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 +FA+ F DEG + G CLY LGCKGP TY CS++ + + G +P+ GH C GC++EG Sbjct: 240 NKFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYN-GLSFPIKSGHGCIGCSQEGF 298 Query: 301 GFHKGIHQLANVENQTPRSQ 320 + A + Q Sbjct: 299 WDKTMYKEEAPITPQNFDIF 318 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 114/291 (39%), Positives = 182/291 (62%), Gaps = 3/291 (1%) Query: 16 RDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVE 75 +DF + + + L + + S+ + + PVIW+ +CTG +E+ ++ +PT++ Sbjct: 508 QDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCTGNSEAFIKTVNPTID 567 Query: 76 NLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA-- 133 L+L+ ISL+YHE+L AA G E +E+ +G Y+L+V+G++PL G + + Sbjct: 568 ELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGAVPLGMGGNFLRIGPQ 627 Query: 134 GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPP 193 GE +++ A+ A+A++A+GSC+ GGV AA NPTGAV + E L +IN+PGCP Sbjct: 628 GETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSEALGRDDIINLPGCPV 687 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHR 253 NP N + T+ H I + + P+L D N+P +AY +H++CERR H+DAG F KE+GDEG + Sbjct: 688 NPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHYDAGEFVKEWGDEGAK 747 Query: 254 EGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 +GWCL+ +GCKGP NC+ ++F + G WPV +GH C C + + F + Sbjct: 748 KGWCLFEMGCKGPYADMNCAQMKFNE-GTSWPVQVGHGCIACGKGKVAFDE 797 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 189/308 (61%), Gaps = 9/308 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKA-----AAEMAESVTNPQRPPVIWIGAQECTGC 62 + G++RR+F K C + + MG+++ A E+A+ + +RP VIW+ QECTGC Sbjct: 27 MERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQLQECTGC 86 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 ES +R+ + + ++VL +S+ Y E+L A G + +A+ + ++LV++GS+P Sbjct: 87 LESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIRE---PHILVINGSVP 143 Query: 123 LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 + D G+YC VAG+ + + +R AE A+ I+A+GSC+ +G + AA NPTGAV ++++L Sbjct: 144 VNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTD 203 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 +TVIN+PGCPP A + +I+T+ + P+ D ++RP AYG IH +C RR HFDAG+ Sbjct: 204 RTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPRRAHFDAGQ 263 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 F F DE RE +CLY +GCKGP+T+ C +++ + G +P+ GHPC GC E Sbjct: 264 FVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKW-NGGVSFPIQSGHPCIGCTELYFFD 322 Query: 303 HKGIHQLA 310 Sbjct: 323 RMTPFYKT 330 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 130/292 (44%), Positives = 179/292 (61%), Gaps = 6/292 (2%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 + RR+FMK C +A MG+ A +AE++ RP V+++ ECTGCTE LLR+ P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 ++ L++E ISL+Y E + AA G +AL G YV ++G+IP + G+Y V Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTVINIPG 190 GE ++ + A GA A+IA+G+C+++GG+ AA NP+GA+ ++E L G INI G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 191 CPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDE 250 CPPNP N++ TV H++T G P+LD RP YG +H+ CERR HF+A FA F + Sbjct: 200 CPPNPVNYIGTVVHLLTKG-MPELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 251 GHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 REGWCL+ LGC+GP TY NC T QF V WPV G PC GC+E G Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQVN--WPVRAGAPCIGCSEPGFWD 308 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 118/360 (32%), Positives = 184/360 (51%), Gaps = 40/360 (11%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR-PPVIWIGAQECTGCTESLLRATH 71 + RRDF++L A A + L + E + + PVIW+ C GCT S + Sbjct: 6 LTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTISTINVVS 65 Query: 72 PTVENLVLETI------SLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 PT+++L+L ++ S++YH + AA G + KG +VLV++GS+PLKD Sbjct: 66 PTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAA--KGPFVLVIEGSVPLKD 123 Query: 126 NGIYCMVA-----GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 +G+Y + G +++H+ A A A++A G+CSA+GG+ A+ NPTGA ++ E+L Sbjct: 124 DGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEIL 183 Query: 181 PG----KTVINIPGCPPNPHNFLATVAHIITYG-KPPKLDDKNRPTFAYGRLIHEHCERR 235 V+N+PGCPP+P + T+A ++ G LDD RP YG+L+H+ C RR Sbjct: 184 KEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHDQCPRR 243 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 H++ G FA + + +CL+ +GCKGP TY +CS + + W V PC GC Sbjct: 244 GHYEKGLFATKLSEP-----YCLFLVGCKGPVTYADCSDRLWNN-KTRWCVEADSPCIGC 297 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAV 355 G +P + P V + AIG+ G V L AGV+ + + Sbjct: 298 AHPGFPD-----------EVSPMFEAPPVI----NSTDKLAIGIAGTAVVLTAGVAAVEL 342 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 14/336 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRAT 70 +NRR+F+KL A S E+ +++ + + P+I + CTG + SL Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 PT+ ++ Y + + G + + ++VL+V GS+ +D G Y Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 131 MVA---GE--PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 G+ +D +R+ A ++A+G C+ +GG A NPT + +Q +LP + V Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 IN+ GCP +P + T+ H+ YG+ P+L+ RP +G IH +C RR ++D G FA Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 + G + CLY +GCKGP TY +C ++ D WP+ PC GC E G Sbjct: 241 DIGQKE-----CLYRVGCKGPVTYADCPIRRWNDHY-NWPIGCNSPCIGCTEPGYPDLME 294 Query: 306 IHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLG 341 + P + + G + +G+ G Sbjct: 295 PFTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGG 330 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 8/299 (2%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT-NPQRPPVIWIGAQECTGCTESL 66 + G++RRDF+KLC A +G+ A ++AE+ N + PVIW+ Q CTGC+ESL Sbjct: 18 LARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQGCTGCSESL 77 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 L + P E ++L+ +S+ YH L AA G Q ++ + + +G Y+LV++GSIP D+ Sbjct: 78 LSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIA--QGHYILVLEGSIPTADS 135 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 YC V G+P ++ + AAE A A+IA+GSC+ +GG+ AG TGA QEVL G V+ Sbjct: 136 -RYCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAG--FTGAAGAQEVLEGVKVV 192 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 N+P CP P + + + +++ PKLD NRP Y +H+ C RR H++ G + ++ Sbjct: 193 NLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHYEKGEYLED 252 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 + + + WCLYH GCKG +TY NC+ + + G + G PC GC++ Sbjct: 253 WNNPDTLD-WCLYHKGCKGQDTYTNCANA-WWNGGANFCGYAGSPCAGCSQPEYYDGFA 309 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 172/322 (53%), Gaps = 8/322 (2%) Query: 19 MKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV 78 ++ + +G+ A + ++ ++W+ ECTGC+ES LR P VE+L+ Sbjct: 30 IEWVTQICNLIGIPKDYAPLCEQILSYKPLTRLVWLHMAECTGCSESFLRLDKPGVESLL 89 Query: 79 LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEP-- 136 LE ISLEYHE + A G ++ H+ L++ +++LV++G + L +N + + Sbjct: 90 LEYISLEYHETIMGAVGFNAKQCLHDTLKE---EFILVIEGGVSLGENAYFLTSGADSTN 146 Query: 137 IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPH 196 + + A A AI AIG+CS++GGV AA NPT + + L + ++NIPGCPP+ Sbjct: 147 GENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPTQSQGISTFL-RQPIVNIPGCPPSEA 205 Query: 197 NFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGW 256 N + ++ + I + P D NRP ++YG+ +HE CER+ F++G F + F DE ++G+ Sbjct: 206 NMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEMCERKAKFESGDFVESFDDERLQDGY 265 Query: 257 CLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG-IHQLANVENQ 315 CLY +GCKGP NC ++F + WPV GH C C+E G I + N N Sbjct: 266 CLYKVGCKGPYVANNCPKVKF-NAKTSWPVRAGHGCIACSEPDFWDSFGKIEEPINNANA 324 Query: 316 TPRSQKPDVNAKEGGNVSAGAI 337 + +KP + + + Sbjct: 325 YIKDKKPLKSLPLVHRLDDTLL 346 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 366 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 11/319 (3%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 +N+ I+ ++ ++ +GL + P +IW+ ECTGC+ Sbjct: 20 ENSQKEEKNIS----LEAVNSIIKILGLPNDFGPLAHRYFQLHTPPSLIWLHLSECTGCS 75 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ESLLR + P +L+ + ISLEYHE +A GHQ E + LEK ++L V+G + Sbjct: 76 ESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLEKK--DFLLAVEGGVCA 133 Query: 124 KDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 D Y + GE + ++K A+ A I A+G+CS++GG+ AA NPT ++ + +VL Sbjct: 134 IDP-FYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAAHPNPTKSIGISKVLE 192 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 K VINIPGCPP+ N +A + I + + LDD+NRP YG+ +H+ CER+ F+AG Sbjct: 193 EK-VINIPGCPPSDANIIAALCFYILFEQDMALDDQNRPLALYGKCLHDLCERKAKFEAG 251 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 FA+ F DE +EG+CL+ +GCKGP Y NC ++F + WPVA GH C C+EE Sbjct: 252 NFAQSFDDEKIKEGYCLFKVGCKGPYAYNNCPKVKF-NSKTSWPVAAGHGCIACSEENFW 310 Query: 302 FHKGIHQLANVENQTPRSQ 320 G ++ Sbjct: 311 DDFGFYEKPMSNEFAYNDF 329 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 99/312 (31%), Positives = 174/312 (55%), Gaps = 8/312 (2%) Query: 19 MKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV 78 ++ + + + +G+ + A+ ++ ++W+ ECTGC+ S LR P +E+++ Sbjct: 30 VQWVSYICSLIGIPKEGVELCAQILSLKPPTRLVWLHLAECTGCSSSFLRLDKPDIESVL 89 Query: 79 LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIV 138 LE I+LEYHE + A G +++ HN L+K +++LV++G + L ++ + + I Sbjct: 90 LEYITLEYHETIMGAVGFSAKKSLHNTLDK---EFILVIEGGVSLGNHAHFLTSGADSIT 146 Query: 139 --DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPH 196 + ++ A+ A AI A+G+CS++GGV AA NPT ++ + L + +INIPGCPP+ Sbjct: 147 GEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPTQSIGIDSFLSQR-IINIPGCPPSEA 205 Query: 197 NFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGW 256 N + ++ + I + P D +RP ++YG+ +H+ CER+ F++G F + F D +G+ Sbjct: 206 NIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMCERKAKFESGDFVQSFDDPHLEDGY 265 Query: 257 CLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG-IHQLANVENQ 315 CLY +GCKGP + NC ++F + +P+ GH C C+E G I + N N Sbjct: 266 CLYKVGCKGPYVFNNCPKVKF-NAKTSYPIQAGHGCIACSEPDFWDSFGRIEEPLNNSNA 324 Query: 316 TPRSQKPDVNAK 327 R K N Sbjct: 325 YLRQSKTLQNLP 336 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 125/323 (38%), Positives = 177/323 (54%), Gaps = 17/323 (5%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAE--SVTNPQRPPVIWIGAQECTGCTESLLRA 69 G+ RR+F+KLC AA L + E+ E ++ +PPVIW+ CTGC+ SLL + Sbjct: 2 GLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKPPVIWLQGASCTGCSISLLNS 61 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P +E ++L+ ISL YH +SAA GH V E L +K Q++LVV+G+IPLK++G Y Sbjct: 62 VDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGKY 121 Query: 130 CMVAGEPIVDH-----IRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 C +A + + ++ A A+IA G C+++GG+ NPTG V +++V+ K Sbjct: 122 CTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKKP 181 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VINI CP +P +FL TV +I+ YG P LD RP Y + IHE C RRP+FD+GRFA Sbjct: 182 VINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRFA 241 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH- 303 GDEG CL LGCKG Y +C + + W + G PC C+E Sbjct: 242 SFIGDEG-----CLALLGCKGFVGYADCPVRGWNN-NVNWCIKAGAPCMACSEPTFPDAA 295 Query: 304 ---KGIHQLANVENQTPRSQKPD 323 G++ L N +P Sbjct: 296 SPIYGVYPLTNKTAPASAQFEPQ 318 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 111/291 (38%), Positives = 166/291 (57%), Gaps = 8/291 (2%) Query: 22 CAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLET 81 LA + L ++ A + ++W+ ECTGC+ESLLRA P+ + LV + Sbjct: 36 VKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDF 95 Query: 82 ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA--GEPIVD 139 SLEYHE L AA G + EE + ++L V+G + D + + GE + Sbjct: 96 FSLEYHETLMAANGTKAEELLEYV---LEEDFILAVEGGVAAIDT-FFLTIGAQGESGYE 151 Query: 140 HIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 + K A A AI A+G+CS++GG+ AA NP+ + EVL K V+NIPGCPP+ N + Sbjct: 152 ILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQK-VVNIPGCPPSDINII 210 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 AT++ +G P+LD++NRP +AYG+ +H+ CER+ F++G FA+ F DE + G CL+ Sbjct: 211 ATLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLF 270 Query: 260 HLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLA 310 +GCKGP TY NC ++F + WPVA GH C C+E+ G ++ Sbjct: 271 KIGCKGPYTYNNCPKVKF-NAKTSWPVAAGHGCIACSEKNFWDEFGNYEKP 320 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 358 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 154/302 (50%), Gaps = 7/302 (2%) Query: 28 TMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYH 87 + + E + V+W+ QECTGC+ESLLR P+ E L+ + + YH Sbjct: 44 LISVPKTMLDTCVEILEYMGDLKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYH 103 Query: 88 EVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG 147 +++ + GH +A +YVL+V+GSIP+ Y + D I Sbjct: 104 DLVMVSSGHGAVAALEHA--NSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHN 161 Query: 148 AAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 A A+ AIG+CS++GG+ +A NPT +L E+ + +IN+PGCPP+ N +AT+ + Sbjct: 162 AEAVFAIGTCSSFGGIQSAYPNPTNGHALSEIFE-REIINVPGCPPSDKNIVATLLYYYL 220 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPE 267 + + P LD RP +AY + +H+ CER+ F AG F + F D +EG+CLY +GCKGP Sbjct: 221 FAESPSLDTLKRPLWAYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGPY 280 Query: 268 TYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQT---PRSQKPDV 324 TY NC ++F + WPV GH C GC+E + G + P + Sbjct: 281 TYNNCPKVKF-NAKTSWPVQGGHGCIGCSEPNFWDNFGNIEKPLSNKSFFTLNEKFMPKI 339 Query: 325 NA 326 Sbjct: 340 IP 341 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 189/391 (48%), Gaps = 23/391 (5%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT-------NPQRPPVIWI 54 TG L+ + G++RR F+KLC A+ A G S ++A+++ + PVIWI Sbjct: 8 TGFEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPVIWI 67 Query: 55 GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV 114 CTGCTE+ + P +VLE ISL Y E LSAA G+ +EE K +E G Y+ Sbjct: 68 EGASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIE--AGNYI 125 Query: 115 LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAV 174 L+ +G++ K G VAG+P +H+ +AA A A++A+GSC+ GG A N GAV Sbjct: 126 LIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAV 185 Query: 175 SLQEVLP----GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHE 230 +++ L V+NIPGCP NP +A + ++ K P LD +N+P + IH+ Sbjct: 186 GVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDETIHD 245 Query: 231 HCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGH 290 +CERR HF+ G F +FG E + +CLY +GC+GP+T NC +++ + W V G Sbjct: 246 NCERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNR-RSWCVEAGA 304 Query: 291 PCYGCNE--EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVA 348 PC GC E H + + + D + + G+ Sbjct: 305 PCIGCCEAAPMDPGHNWVEVNTPFMKRHRDLRIGDWTFQTEAVCLGLTAIVAAGIAVHGF 364 Query: 349 GVSVM-------AVRELGRQQKKDNADSRGE 372 G+ E K S G+ Sbjct: 365 GIKASGRMKGKFRFEEKRAWDAKHPDRSVGD 395 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 28/319 (8%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-TNPQRPPVIWIGAQECTGCTESLLRATH 71 ++RR+F+KLC+A A +G+S + ++ ++ PVIW+ Q CTGC+ SLL A H Sbjct: 3 LSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNAVH 62 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 P ++ ++L+ ISLE+H + A+ G + + EK+ G + L+V+G+IP G YC+ Sbjct: 63 PRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCI 122 Query: 132 VAGE----------PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 V +++ IR A + A +A+G+CSA+GG+ AA N TG+ S+++ Sbjct: 123 VGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFA 182 Query: 182 GKTV----INIPGCPPNPHNFLATVA----HII--TYGKPPKLDDKNRPTFAYGRLIHEH 231 + + +N+PGCPP+P + T+ H++ T P+LDD RP +G IHE+ Sbjct: 183 DEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIHEN 242 Query: 232 CERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHP 291 C +D FA+ F G C LGCKGP TY +C+ ++ + G W V Sbjct: 243 CPYLDKYDNSEFAETFTKPG-----CKAELGCKGPSTYADCAKRRWNN-GINWCVE-NAV 295 Query: 292 CYGCNEEGIGFHKGIHQLA 310 C GC E K +A Sbjct: 296 CIGCVEPDFPDGKSPFYVA 314 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 16/300 (5%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVT--NPQRPPVIWIGAQECTGCTESLLRAT 70 + RR F++L A ++ +GL S A ++AE++ R V+W+ AQ C+GC+ S+L + Sbjct: 4 LTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISMLDSE 63 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 P L+ + ISL +H LSAA G +++ +G Y+LVV+GSIP C Sbjct: 64 SPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSVQ--QGGYILVVEGSIPAGMPE-AC 120 Query: 131 MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TVI 186 M+ G P+ + I++AAE A +IA+G+C+A+GG+ AA NPTGAV L L +I Sbjct: 121 MMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPII 180 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 NIPGCP +P + T+ H+ +G P D++ RP + H+ C R ++ FA++ Sbjct: 181 NIPGCPSHPDWLVGTLVHLCKFG-LPPCDEQRRPKMFFASKNHDKCPRFSDYEQENFARK 239 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 F D G CL+ LGC G TY +C T++ + G + G PC GC+ K + Sbjct: 240 FSDPG-----CLFKLGCLGVSTYADC-TIRDRNGGTNACIKAGAPCIGCSSPQFAQKKSL 293 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 121/331 (36%), Positives = 178/331 (53%), Gaps = 17/331 (5%) Query: 11 HGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP--QRPPVIWIGAQECTGCTESLLR 68 + RRDF++LC A A +GLS+ AE+ E+ + P PPV+W+ C+GC+ SLL Sbjct: 2 RNLTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLLN 61 Query: 69 ATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGI 128 + P + ++ + ISL++H+ L AA G +Y GQY LVV+G++P+ Sbjct: 62 SVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVAAGRH 121 Query: 129 YCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 + P D +R+ A A A++A+G+C+A+GG+ AAGVNPT + ++ V+ G Sbjct: 122 TATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRGT 181 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 ++N+PGCP +P L T+ H+I YG P+LD RP +G+ IH+ CERRP FD GRF Sbjct: 182 PLVNVPGCPIHPDWVLGTLLHLIRYG-MPELDKLQRPLMFFGKSIHDICERRPDFDQGRF 240 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 AK+ + G CLY LGCKGP +G+C+ +F + G W V PC C Sbjct: 241 AKKLSEPG-----CLYKLGCKGPMAFGDCAERKFNN-GANWCVGANSPCLSCTGPEFPDA 294 Query: 304 KGIHQLANVE---NQTPRSQKPDVNAKEGGN 331 + E TP Q P G Sbjct: 295 SAPFFVKIKEYGPAGTPSPQPPHTKIFGGEQ 325 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 185/375 (49%), Gaps = 44/375 (11%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR+F+KL A+ A+ L++ A + + W+ CTGCT S ++ P Sbjct: 3 LSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSADP 62 Query: 73 TVENLVLET--------ISL-EYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 + ++ E I+L +Y E + A G EE K + + + +L+V+G++ Sbjct: 63 DLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEGAV-- 119 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG-----VNPTGAVSLQE 178 +D G +C + G+ +H+++AAE A IIA+G C+ +GG+ A NPTGA +Q+ Sbjct: 120 QDEG-FCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGVQD 178 Query: 179 VL----PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIH-EHCE 233 L KTVINIP CP +P + + T+A ++ G P+LD RP +G+ +H E C Sbjct: 179 FLYEVGINKTVINIPCCPAHPDHIIVTLASLML-GVVPELDKYGRPKVFFGKNMHNELCP 237 Query: 234 RRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCY 293 RP++D G F + G+EG C + +GCKGP +C+ ++ + G + V C Sbjct: 238 YRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNN-GTSYCVETN-ICI 290 Query: 294 GCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVM 353 GC E G + + P + P V + AG +G + G+ + Sbjct: 291 GCAEPGWPDK-----FSPFYAEVP--ELPRVLGVGAETIGAGLLG------ATLLGIGIH 337 Query: 354 AVRELGRQQKKDNAD 368 AVR LG ++ K + Sbjct: 338 AVRHLGAKKHKKEEE 352 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 20/321 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-----TNPQRPPVIWIGAQECTGCTESLL 67 + ++D++ LC +L S + + E+ V N ++ PVIWI + S + Sbjct: 1 MKKKDYVNLCRSLKTE--GSHQLSREILRVVRDFRSNNGKKLPVIWIETNDSGDNNISFM 58 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 T+P ++ + + I L Y AA G + + K ++ LVV+G+IPLK NG Sbjct: 59 NTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILKKVALREKREFTLVVEGAIPLKANG 118 Query: 128 IYCMV-----AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 Y + V+ +R E A +A+G+C+++GG +AA N TG+V+L +VL Sbjct: 119 RYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCASFGGASAASPNITGSVALGDVL-D 177 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 + +IN+ GCP NP F+ T+AH+ YG P LD RP Y +H HC+RR +FD G Sbjct: 178 RQIINVSGCPINPDWFVGTLAHLQMYG-LPDLDRLGRPELFYQFTVHRHCQRRSYFDDGN 236 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 FA+E GD C++ GC GP T +C + + +P+ + PC GC E Sbjct: 237 FAEELGDIE-----CMFSQGCVGPRTGADCPYRLWDN-HVSYPIKVNTPCIGCTNEDFPD 290 Query: 303 HKGIHQLANVENQTPRSQKPD 323 + + + Sbjct: 291 GSSPFFVPLPLKRQEDEEVTP 311 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 161/304 (52%), Gaps = 18/304 (5%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRATHPTVENL 77 K C AA + + + + + ++ R ++W+ C+G SLL +P + L Sbjct: 5 KTCPEYAARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKYL 64 Query: 78 VLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA---G 134 + + + Y L AA G + E ++ +Y+L V+G++ K+NG+Y ++ G Sbjct: 65 ISQMTNFLYDNSLVAAEGEKAMEKLMGSIG---DEYILAVEGAVATKNNGMYNVIGRWQG 121 Query: 135 EPIV--DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCP 192 +P+ + I+ E A+ +IA+G+C++ GGV+AA NP+ VS+Q +L + VI +PGCP Sbjct: 122 KPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSIL-NRKVIKLPGCP 180 Query: 193 PNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGH 252 +P F+ T+AHI+ YG+ P+LD+++RP Y LIH+ C RR FD G FAK+ G Sbjct: 181 CHPDWFMGTLAHILLYGE-PELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLG---- 235 Query: 253 REGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANV 312 E C++ LGC+GP T +C ++ WPV PC GC + G N Sbjct: 236 -ESTCMFKLGCRGPVTRIDCPIRKWNQY-VNWPVEDDTPCIGCAQFGFPDQMEPFITYNT 293 Query: 313 ENQT 316 + Sbjct: 294 TREV 297 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 152/299 (50%), Gaps = 18/299 (6%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 S++A A ++ P++W+ C G SL+ HP E ++ E + + + L Sbjct: 37 STRAPEPPAADTERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLM 96 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA----GEPIVDH--IRKAA 145 A GHQ E + + G Y+LVV+G++P G Y + GEP + + A Sbjct: 97 GAKGHQAIEVLEKVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELA 156 Query: 146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A ++A+GSC+AWG A NPTG+ + V+ +TVIN+PGCP +P L T+AH+ Sbjct: 157 AAAKHVVAVGSCAAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHL 215 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKG 265 I YG P+LD NRP YG IH C+RR +F++G FA E G+ WCLY +GCKG Sbjct: 216 IWYGV-PELDAMNRPVVFYGETIHNLCQRRHYFESGIFAGEIGEP-----WCLYKIGCKG 269 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDV 324 P TY +C + Q+C WPV PC GC + A P + P V Sbjct: 270 PVTYADCPSRQWCGEHMNWPVGANTPCIGCTSPEF-----LEHTAPFFEHLPDVRLPGV 323 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 93/261 (35%), Positives = 150/261 (57%), Gaps = 16/261 (6%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ IW+ C+G SLL A +P + ++ ++L ++ L A G E N L Sbjct: 33 KKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEGEFAYEQFLNTL 92 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVA---GEPIV--DHIRKAAEGAAAIIAIGSCSAWG 161 + +++L+VDG++ K+NG Y ++A G P+ + I+ A E A ++ +G+CS++G Sbjct: 93 DT---EFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYG 149 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPT 221 G++AA NP+G+ S+ + + K VI +PGCP +P + T+AH++TYGK P+LD+K RP Sbjct: 150 GISAAKPNPSGSKSV-DAVINKEVIKLPGCPCHPDWVVGTLAHLVTYGK-PELDNKGRPI 207 Query: 222 FAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVG 281 YG IH+ C RR FD FAK+FG+EG C++ LGC+GP T +C ++ Sbjct: 208 LFYGITIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGPVTKTDCPRRKWNGY- 261 Query: 282 GVWPVAIGHPCYGCNEEGIGF 302 WP+ C GC +E Sbjct: 262 VNWPIGDNTNCIGCAQERFPD 282 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 13/298 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR+F+K+ AALAA G+ A Q P ++++ CTGC+ SLL+A P Sbjct: 1 MDRRNFLKMAAALAAAFGVRGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAASP 60 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 T ++ + L +H LS+ G Q E + ++ G+Y L ++G++P C++ Sbjct: 61 TPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVP-GTMPRACVI 119 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT----VINI 188 +P ++ +AA + +A+GSC+ GG+ AA NPTGA+ L+E + +I+I Sbjct: 120 DHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDI 179 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG 248 GCP +P T+ H++ G P ++ P + R +HE C R F FA++ G Sbjct: 180 RGCPIHPDWLWHTITHLVKVGLPSLVN--GAPQAFFQRRLHELCPRYYDFQEEIFAEKMG 237 Query: 249 DEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 + G CL+ LGC GP T+ +C T ++ + G W + PC GC K + Sbjct: 238 ERG-----CLFKLGCLGPITFADCPT-RWWNGGRTWCIDTNAPCIGCASPDFARKKDL 289 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 313 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 164/373 (43%), Gaps = 38/373 (10%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR--PPVIWIGAQECTGCTESLLRAT 70 + RR F+K L A LS K + + E+ + ++W+ Q + CT SLL+A Sbjct: 3 LGRRGFVKALTTLGAAAFLS-KYKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQAA 61 Query: 71 HPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P + + V E + + +H + FG + + VLV++GSIP D Sbjct: 62 DPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEI-----EPDVLVLEGSIPTGDMEYA 116 Query: 130 CMVAGE-----PIVDHIRKAAEGAA-AIIAIGSCSAWGGVAAA----GVNPTGAVSLQEV 179 C +V+ + + A++ GSC+ +GG+ +A G +PT AV L + Sbjct: 117 CTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQF 176 Query: 180 LPGK----TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERR 235 L K V+ +PGCP +P L T + G LDD RP + + +LIH++C RR Sbjct: 177 LKDKKPAVPVVLLPGCPGHPDWLLVT-LAAVLLGVKVDLDDYWRPKWFFSQLIHDNCARR 235 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 +D G FAK F + + CL+ LGC+GP TY CS ++ + G + G PC GC Sbjct: 236 GFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKW-NGGVNVCMNAGAPCIGC 294 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAV 355 G + + + R + A +G +V A+ Sbjct: 295 MHPGFPD-----ETSPFFKEQSRLEIDLTKTVFSTLTGAVLVGAGAYIV-------THAI 342 Query: 356 RELGRQQKKDNAD 368 +E G++ KK + Sbjct: 343 KE-GKEDKKGGEE 354 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 313 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 20/298 (6%) Query: 16 RDFMKLCAALAATMGLSSKAAAEMAESVT------NPQRPPVIWIGAQECTGCTESLLRA 69 +D+MK A G K A EM + T N ++ IW+ C G SLL + Sbjct: 13 KDYMKNVG-CARGEGKPFKFAKEMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNS 71 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P + ++ +++ + + G + E + L K +Y+L+V G+IP+ +G+Y Sbjct: 72 EMPDLPFVLKNLVNMTFFGSICGDQGEKAYERILDTLNSDK-EYILLVCGAIPINADGLY 130 Query: 130 CMVA---GE--PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 ++A G ++ +++AA+ A II+IG+C+ +GG AA N + A+S++E L Sbjct: 131 TVLATYQGRKITAMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRND 190 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 +INIPGCP NP L TV ++I YG LD++ RP YG+ IHE C +R FD G FA Sbjct: 191 IINIPGCPANPVWTLGTVGYLINYGTI-DLDEEGRPVAFYGKTIHEICPKRKFFDKGIFA 249 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 K+ G+ CLY LGCKGP T C ++ WP+ PC GC +G Sbjct: 250 KKLGNPE-----CLYELGCKGPITKVYCPISRWNQ-SDNWPIGDRTPCIGCARKGFPD 301 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 141/309 (45%), Gaps = 20/309 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-TNPQRPPVIWIGAQECTGCTESLLRATH 71 ++RR+F+K L +G SS E E+ RP +IW+ A C GC+ + L A Sbjct: 1 MDRREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEI 60 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 P V ++ ++ +H + A+ G + + + +LVV+G+IP CM Sbjct: 61 P-VTEILNRFANIVFHPTIMASDGKEAMDIL---MNYKSDNMILVVEGAIPTAMP-HACM 115 Query: 132 VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP----GKTVIN 187 + + D I K A+ A AI+A G+C+ + G+ T A S++ L V+N Sbjct: 116 MGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVVN 175 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +P CP P + L T+ + I + P LD +RP + IHE C + FAK+ Sbjct: 176 LPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKKI 235 Query: 248 GDEGHREGWCLYHLGCKGPETYGNC--STLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 GD G CL+ LGC+GP T +C ST ++ + GHPC GC E Sbjct: 236 GDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYN---CIKSGHPCVGCGSENFPRTIM 287 Query: 306 IHQLANVEN 314 + + Sbjct: 288 FKRSDDKRE 296 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 144/281 (51%), Gaps = 14/281 (4%) Query: 30 GLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEV 89 GLS A A + + + P ++++ CTGC+ SLL+A P+ +++ + L +H Sbjct: 22 GLSQPARAALND-IDPRTVPKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTD 80 Query: 90 LSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA 149 LSA G Q E ++ ++ G YVL ++G+IP C++ +P D++ +AA + Sbjct: 81 LSATSGAQAMELINSFIDGQAGDYVLAIEGAIPAGMPE-ACIIDHKPFADYLERAARTMS 139 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TVINIPGCPPNPHNFLATVAHI 205 +AIGSC+ GG+ AA NPTGAV L E + VINI GCP +P T+ H+ Sbjct: 140 GAVAIGSCACDGGIPAAEGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHL 199 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKG 265 + G P ++ P + R +HE C R F FA++ GD G CL+ LGC G Sbjct: 200 VLVGNPNLVN--GSPRVFFERRLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLGCLG 252 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 P T+ +C T ++ + G W V PC GC K + Sbjct: 253 PITFADCPT-RWWNGGRTWCVDTNAPCIGCASPKFARQKDL 292 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 161/302 (53%), Gaps = 15/302 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAE---SVTNPQRPPVIWIGAQECTGCTESLLRA 69 ++RRDF+K C ++A + + A++AE + + RP +++I Q CTGC+ SL+ Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGFMKIQSADRPQLVFIQGQSCTGCSTSLMYG 61 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 + +++ + ++ H LS + G+ G ++LV++GSIP + Sbjct: 62 NETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEV--TSAGGHILVLEGSIP-AEMKKA 118 Query: 130 CMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVS----LQEVLPGKTV 185 CM+ EP+ D ++K E A+A++A GSCS +GG+ A+G N TGA+ ++E K + Sbjct: 119 CMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISKPL 178 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I IPGCP +P + TVA+I+ GK P ++D P +G LIH +C R +F + + Sbjct: 179 IKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIYLE 237 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 ++ + H CL GC+G T +C+ ++ + G V PC GC E F + Sbjct: 238 DYAKDKHS---CLLKKGCRGTITKSDCALRRW-NGGVNVCVESNAPCVGCINEKWPFKEN 293 Query: 306 IH 307 I+ Sbjct: 294 IY 295 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 159/370 (42%), Gaps = 59/370 (15%) Query: 34 KAAAEMAESVTNPQRPPVI---WIG-AQECTGCTESLLRATHPTVENLVLETI----SLE 85 A E A S Q PV+ WI C G + +L AT P++E +VL + + Sbjct: 2 TAPTESAGSRPQGQEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVA 61 Query: 86 YHEVLSAAFGHQVEENKHNALE-------KYKGQYVLVVDGSIP---LKDNGIYCMVA-- 133 H L F + +E +VLVV+GSIP +K G +C Sbjct: 62 VHWPL-IDFESGPMQGADVFIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNN 120 Query: 134 ---GEPIV--DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL-------P 181 G+P+ + + + A A A++A G+C+ +GG+ A NPTGA+ + + L Sbjct: 121 PETGQPMTTSEWLDRLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKA 180 Query: 182 GKTVINIPGCPPNPHNFLATVAHIIT----YGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 G ++N+PGCP P N T+ +++ LD+ RPT+ +G+ +HE C+R + Sbjct: 181 GLPIVNVPGCPIQPDNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGY 240 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 ++ G+FA E+G CL +GC GP N + + G +G C C Sbjct: 241 YEQGQFATEYGSPK-----CLVKIGCWGPVVKCNVPKRGWMN-GIGGCPNVGGICIACTM 294 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 G P P ++ G VS+ G G V+ + G+++ V + Sbjct: 295 PGF----------------PDKFMPFMDEPPGARVSSTVSGAYGSVIRTLRGITLKTVDK 338 Query: 358 LGRQQKKDNA 367 + +KK Sbjct: 339 EPKWRKKGRE 348 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 81/289 (28%), Positives = 133/289 (46%), Gaps = 26/289 (8%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVL-ETISLEYHEVLSAAFGHQVEENKHNALEK 108 ++W+ C G T S+L A+ P + + + + L +H LS G +++ + +E Sbjct: 3 NLLWLQGGACGGNTLSVLNASDPDILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIEG 62 Query: 109 YKGQYVLVVDGSIPLK--DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 +L+ +GSI G + M AG+P++ +R+ A A I+A+G C+++GG+ AA Sbjct: 63 KINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAA 122 Query: 167 GVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPP 212 NPT + LQ G VIN+ GCP +P + T+ +I G+ Sbjct: 123 DPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLT-LILRGEMN 181 Query: 213 K--LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYG 270 + LD+ NRP Y C R+P+F KEFG H+EG + LGC+G T Sbjct: 182 QEMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEFG---HKEGCLFFDLGCRGSYTRS 238 Query: 271 NCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRS 319 +C+ + + + +G PC GC E + + PR Sbjct: 239 SCNNILWNNQSS--KTRVGTPCMGCTEFDFP-TFNFFKTEKNRSGIPRR 284 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 158/380 (41%), Gaps = 54/380 (14%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIG-AQECTGCTESLLRATHPTVENLV 78 KL AA + + A E + + ++WI C G + +L AT P++E + Sbjct: 30 KLGVGAAARERPAEQVAPERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIA 89 Query: 79 LETI----SLEYHEVLS-----AAFGHQV-EENKHNALEKYKGQYVLVVDGSIP---LKD 125 L + + H L G E A +VLVV+GSIP + Sbjct: 90 LGALPGLPKVAVHWPLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERING 149 Query: 126 NGIYCMVA-----GEPIV--DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQE 178 +G + G+PI + + A A A++A+G+C+ +GG+ A NPTGA+ + + Sbjct: 150 DGYWTGFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPD 209 Query: 179 VL-------PGKTVINIPGCPPNPHNFLATVAHII--TYGKPP--KLDDKNRPTFAYGRL 227 L G ++ +PGCP P N T+ +++ G+ P LDD+ RP + +G Sbjct: 210 YLGWDWKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTT 269 Query: 228 IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVA 287 +H+ C+R ++ GRFA +G+ CL LGC GP N + + G Sbjct: 270 VHDGCDRAGFYEEGRFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMN-GVGGCPN 323 Query: 288 IGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLV 347 +G C C G P P ++ G VS+G + G V+ + Sbjct: 324 VGGICIACTMPGF----------------PDRFMPFMDTPPGAKVSSGLSTVYGKVILNL 367 Query: 348 AGVSVMAVRELGRQQKKDNA 367 +++ R ++ + Sbjct: 368 RKITMHTADREPRWRRPGDE 387 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 151/348 (43%), Gaps = 50/348 (14%) Query: 47 QRPPVIWI-GAQECTGCTESLLRATHPTVENLVLETI----SLEYHEVLSAAF--GHQVE 99 ++WI C G T S+ A+ P +E+++ I ++ H + + G + Sbjct: 18 DEVHILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPTLGGEEFL 77 Query: 100 ENKHNALEKYKGQYVLVVDGSIP---LKDNGIYCMVAGEP-------IVDHIRKAAEGAA 149 A +VLV++GSIP + G + +P I I + A A Sbjct: 78 APFRAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAW 137 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL-------PGKTVINIPGCPPNPHNFLATV 202 A+IAIG+C+A+GG+ A NPTG++ L + L ++N+PGCP P +F+ T+ Sbjct: 138 AVIAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETL 197 Query: 203 AHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL 258 ++ + PP LDD++RP + +GR +HE C+R +++ G FAK++ C Sbjct: 198 TWLLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQ 252 Query: 259 YHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPR 318 +GC GP N + G +G C C G P Sbjct: 253 VKIGCWGPVVNCNVPKRGWM-GGVGGCPNVGGICIACTMPGF----------------PD 295 Query: 319 SQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDN 366 P ++ G ++S+ A+ G V+ + G++ V R + + Sbjct: 296 KFMPFMDMPPGASLSSLAVKPYGSVIRRLRGITNATVNREPRWRHNRD 343 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 109/393 (27%), Positives = 171/393 (43%), Gaps = 76/393 (19%) Query: 2 TGDNTLIHS------HGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIG 55 T ++ L+ ++RR F+K L A++ L + ++A+++ + V+W+ Sbjct: 6 TDNDDLLEKFKNLDFMKMDRRTFIKAVGVLGASLFLQT-YKNDLAKALEFSET-KVVWLH 63 Query: 56 AQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQV------------EENK 102 +GCT S+L P + + E + L YHEVL G V E Sbjct: 64 GVMDSGCTISMLDGGSPDIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVL 123 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNG--IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 + LEK KG YVLV +G+I G Y M+ G + KAA+ A AI+AIG+C+ Sbjct: 124 DDILEKEKG-YVLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATN 182 Query: 161 GGVAAAG------VNPTG-AVSLQEVLPG--------KTVINIPGCPPNPHNFLATVAHI 205 GGV +A ++P G A ++++ G K VIN+ GCP +P T+ + Sbjct: 183 GGVNSAKSDIVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAV 242 Query: 206 ITYGKPPK------LDDKNRPTFAY--GRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257 + LD RP + +IH++C RR ++D G F G C Sbjct: 243 VLGKIKIPDDLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPK-----C 297 Query: 258 LYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP 317 L+ LGCKGP T+ +C+T + + + G PC GC + G P Sbjct: 298 LWKLGCKGPYTHADCATRNW-NGHLNYCPQAGSPCIGCVQPGF----------------P 340 Query: 318 RSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGV 350 S +P E G++G + +AGV Sbjct: 341 DSTRPFFVEFEKT-------GIVGTNITTIAGV 366 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 16/302 (5%) Query: 14 NRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ----RPPVIWIGAQECTGCTESLLRA 69 +RR+F+K + G + + + + + RP ++W+ C+GC+ SLL Sbjct: 17 SRREFLKKIYRVVVAAGAAPLLSFDELLAAEGGENPFPRPNLVWLQGASCSGCSLSLLNT 76 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 TV +L+ L YH L+ A G+QV + L Y+LV++G IP Sbjct: 77 EEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTK-LTTGVEPYLLVLEGGIPAGMP-HA 134 Query: 130 CMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TV 185 C++A P + + + A+GA A +A+G+C+A+GGVAA TG VSL L + + Sbjct: 135 CLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRDIAVPL 194 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 +N+P CP P + + T+ H + + P+LD + RP + +H+ C R F FA+ Sbjct: 195 VNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQELDFAR 254 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 G++G CL LGC+GP + +C L + + + + GHPC GC E Sbjct: 255 HIGEDG-----CLLELGCQGPVSNNDCPDLGY-NGNLNYCLKAGHPCTGCAGELFPRPVL 308 Query: 306 IH 307 H Sbjct: 309 YH 310 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 179/389 (46%), Gaps = 58/389 (14%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATH 71 G+ RR F+ AA + + +A ++ + ++ ++W+ C GCT S L + Sbjct: 13 GLGRRAFL-ALAATTGAAAFLAMHSPGVAAAIADSRK-KLLWLRGSGCGGCTASFLNGGY 70 Query: 72 PTVENLVLET-ISLEYHEVLSAAFGHQVEEN-----KHNALEK-----YKGQYVLVVDGS 120 P V + + YH+ L A G ++ +NAL+K G YVLVV+G+ Sbjct: 71 PDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTYNALKKLDLLIDSGDYVLVVEGA 130 Query: 121 IPLKDNGI--YCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSL-- 176 IP +G YC G + + +AAE A IIA+G+C+A+GG+++AG + T A + Sbjct: 131 IPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAY 190 Query: 177 ----------QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 E+ K VIN+PGCP +P FL T+A +++ G +DD RP + + Sbjct: 191 TGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLADVLS-GAEVTVDDYRRPAAFFSK 249 Query: 227 L-IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWP 285 IH+ C RR +D G+ +F EG CLY GCKG TY +C ++ + G Sbjct: 250 SAIHDTCTRRGSYDQGQRDTQFAGEG-----CLYGAGCKGMITYADCPVRRW-NGGVSTC 303 Query: 286 VAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKE------GGNVSAGAIGL 339 G PC GC E + P + P N E G NV GA + Sbjct: 304 TLAGGPCVGCVE----------------AEFPGAFMPFFNRVEDRSLISGTNVDLGAKVI 347 Query: 340 LGGVVGLVAGVSVMAVRELGRQQKKDNAD 368 LG + L AGV + +G + + D Sbjct: 348 LGAAI-LGAGVHAVKRLAIGDNDNEGDGD 375 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 134/321 (41%), Gaps = 36/321 (11%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEK 108 V+W+ C+G T S L A PTV +LV + +++ +H + G QV ++ + Sbjct: 3 NVLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSG 62 Query: 109 YKGQYVLVVDGSIPLKDNGIYCM--VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 +LV +GSI NG M A P+ D +R ++ ++AIG C+ WGG+ A Sbjct: 63 RTQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAV 122 Query: 167 GVNPTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIITYGKPP 212 NP+ + +Q + K VINIPGCP +P + I G+ Sbjct: 123 APNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQ-ILVAIATGRIG 181 Query: 213 KL--DDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYG 270 + D+ +RP + + C F G G R G Y +GC+GP T Sbjct: 182 DVLIDEYHRPKTFFTDFVQTGCTNVVSFAQKVD----GGFGKRGGCLFYEVGCRGPMTRA 237 Query: 271 NCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH--------KGIHQLANVENQTP--RSQ 320 +C+ + + HPC GC E G H K +H L + +TP S+ Sbjct: 238 SCNRILWNRQSS--KTRANHPCLGCTEPGFPHHDLEKGSVFKTMHYLGFLPKETPTGTSK 295 Query: 321 KPDVNAKEGGNVSAGAIGLLG 341 V +G+ ++G Sbjct: 296 LGYYLRAGFEKVVSGSERIVG 316 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 121/274 (44%), Gaps = 26/274 (9%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++WI C+G ++S L +PTV + E I+L +H +S + + + + Sbjct: 3 NLLWIQGLTCSGNSQSFLCGENPTVSDFFSE-INLLWHPEIS--YSEDIMDILNGIYRDE 59 Query: 110 KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN 169 L+++G++ N + + I I K A IIA+G+C+ G A N Sbjct: 60 IKLDFLIIEGAV--TSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGNYPALY-N 116 Query: 170 PTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIITYGKPPKLD 215 P +Q L GK VINI GCP +P TV ++YG KLD Sbjct: 117 PDQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLT-LSYGLDLKLD 175 Query: 216 DKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTL 275 +NRP Y L H+ C R +F+ A+EFG +EG Y LGC+GP T+ C+ + Sbjct: 176 SQNRPKELYMYLSHDGCTRNEYFEWKVEAEEFGT---KEGCLFYELGCRGPVTHAPCNRI 232 Query: 276 QFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQL 309 + G G PC GC E + + + Sbjct: 233 LWN--GRSSKTRAGMPCIGCTEFDFPYRENYLET 264 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 95/347 (27%), Positives = 150/347 (43%), Gaps = 61/347 (17%) Query: 53 WIGAQECTGCTESLLRATHPTVENLVLETIS-----LEYHEVLSAAFGHQVEENKHNALE 107 WI C GC+ + + AT P+VENL+ TI + +H VL+ G + + A + Sbjct: 24 WIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFRLAAK 83 Query: 108 KYKG-QYVLVVDGSIPLKDNGIYCMVAGE-----------------PIVDHIRKAAEGAA 149 G +V++ +GSI D G+ G P + + +E AA Sbjct: 84 GELGAPFVVLCEGSI--MDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMSEHAA 141 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP-------GKTVINIPGCPPNPHNFLATV 202 A++A+G+C+ WGG+ AA NPT + S+ ++L G V+NIPGC P N T+ Sbjct: 142 AVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNITETI 201 Query: 203 AHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL 258 ++ + P+ D+ RP++ + +H C R ++ G FA+E GD+ CL Sbjct: 202 VSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE-----CL 256 Query: 259 YHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPR 318 +GC GP N + + G + +G PC GC G P Sbjct: 257 VEVGCWGPVVQCNINKRGAINHVG-GCMNVGAPCIGCTMPGF----------------PD 299 Query: 319 SQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKD 365 S P G VS+ + G V+ + M++ L R K D Sbjct: 300 SFAPFYKTPPGTMVSSNISRVTGTVIRNLR---EMSMSNLNRTAKWD 343 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 30/293 (10%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + T ++WI C G + S L + + T+ ++ L I++ YH +L++ + ++ Sbjct: 2 AGTKKGLKNLVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHPMLTSEM--EFKDV 58 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 L + LVV+G++ K + ++ G + + + + + I+A+G+C+ +G Sbjct: 59 YKLLLSGKESLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACYG 116 Query: 162 GVAAAGVNPTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIIT 207 A LQ K +INI GCP +P + T+ + Sbjct: 117 NFPALYNE--NVKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILS-LN 173 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPE 267 +G KLD+ NRP Y L H+ C R +F+ A EFG +EG Y LGC+GP Sbjct: 174 FGYDIKLDNLNRPKDFYMYLAHDGCIRNEYFEWKVEAHEFGT---KEGCLFYELGCRGPL 230 Query: 268 TYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN---VENQTP 317 T+ C+ + + + G PC GC E + + + P Sbjct: 231 THSPCNKILWNEKSS--KTRSGMPCIGCTEFDFPLRSKYFETKTNIGIPEEVP 281 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 95/432 (21%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + I+RRDF+K+ A L+ +A + ++W AQ+C G T +L+ Sbjct: 3 LKGISISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTALI 62 Query: 68 RATHPTVENLVL--------ETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDG 119 +AT P + +++ + L +HE + +G A + +VLV++G Sbjct: 63 QATEPDLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLEG 122 Query: 120 SIPLKDNG-------IYCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 S P + YC + E V+ +R+ A A++ +G+C+++GG+ A Sbjct: 123 SFPQDEKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVANK 182 Query: 168 V--------------NPTGAVS---------------------LQEVLPG---------- 182 V +PTGAV + + G Sbjct: 183 VLERVPGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEIR 242 Query: 183 ---KTVINIPGCPPNPHNFLATVAHIITYGK----PPKLDDKNRPTFAYGRLIHEHCERR 235 + + +PGCP N + L +A ++ + K P+LD RP F +G +HE C R Sbjct: 243 PDCRPAMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPRA 302 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYG 294 + AG F G+ +R CLY +GCKGP NC + V GV P G C G Sbjct: 303 GSYAAGDFRAYPGENSYR---CLYAVGCKGPI--SNCPWNKLGWVNGVGGPTRTGGVCIG 357 Query: 295 CNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMA 354 C G + +P + V +G G+ + L+AGV + Sbjct: 358 CTMPGF----------------TDAYEPFYKPLQAPRVPSGLEGV-AAIAALLAGVGLAY 400 Query: 355 VRELGRQQKKDN 366 +++K+ Sbjct: 401 GASKSIEKRKEE 412 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 158/432 (36%), Gaps = 112/432 (25%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 I RRDF++ + AA L+ A + A ++W AQ+C G T ++++AT P Sbjct: 4 ITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQATDP 63 Query: 73 TVENLVL--------ETISLEYHEVLSAAFGH--------------------------QV 98 ++ +++L T+ L +HE + +G Sbjct: 64 SLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPPGDA 123 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLK----------DNGIYCMVAGEPIVDHIRKAAEGA 148 + + G YVLV++GS P + + G YC+V + ++ A Sbjct: 124 MKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLLNNA 183 Query: 149 AAIIAIGSCSAWGGVAAAG--------------VNPTGAV-------------------- 174 A++A+G+C+A+GG+ A +PTGA+ Sbjct: 184 LAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQPYFQ 243 Query: 175 -------------SLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK---PPK----- 213 + + K + +PGCP N + L T+A + P Sbjct: 244 PEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVLERK 303 Query: 214 --LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 LD RP F + +HE C R + AG F G +G CL+ +GCKGP N Sbjct: 304 AFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRP---TPGAGDGKCLFEVGCKGPI--SN 358 Query: 272 CSTLQFCDVGGV-WPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGG 330 C + V GV P G C GC G N + PD A G Sbjct: 359 CPWNKVGWVSGVGGPTRTGGVCIGCTMPGF--TDAYEPFWAPLNA---PRLPDTTAIAVG 413 Query: 331 NVSAGAIGLLGG 342 + A+G LG Sbjct: 414 VGTGVALGALGA 425 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 125/297 (42%), Gaps = 26/297 (8%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV-LETISLEYHEVLSAAFGHQVE 99 ++ P R ++W+ + C GC+ SLL A P + + L I + H LS A G Sbjct: 16 DATGRPARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYH 75 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM----VAGEPIVDHIRKAAEGAAAIIAIG 155 L + +L V+G+I NG G+P++ + + A A +IAIG Sbjct: 76 ALIARILSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIG 135 Query: 156 SCSAWGGVAAAGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLAT 201 SC+A+GGV+AAG N T A L G INI GCP +P + T Sbjct: 136 SCTAYGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVET 195 Query: 202 VAHII-TYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + + LD RP F L+H C R ++ AKE G + G + H Sbjct: 196 LVQLGDGTFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEPG----QLGCLMEH 251 Query: 261 LGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP 317 LGC G + +G+C+ + G + G+PC GC E G + P Sbjct: 252 LGCIGTQVHGDCNMRAWNGEGS--CIRGGYPCIGCTEPTFGERDAPYLETPKRGGIP 306 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 73/296 (24%), Positives = 113/296 (38%), Gaps = 30/296 (10%) Query: 39 MAESVTNPQRP----PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAA 93 M + V +RP + W+ C G T S L + P + L I + YH LS Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLSNT 120 Query: 94 FGHQVEENKHNALEKYKGQYVLVVDGSIPLK--DNGIYCMVAGEPIVDHIRKAAEGAAAI 151 + +LVV+G++ G+Y P D + A A + Sbjct: 121 SQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFV 180 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHN 197 +A G+C+A+GG A A LQ G V+N+ GCP +P Sbjct: 181 VAAGTCAAFGGFGART--EIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQV 238 Query: 198 FLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257 + + + T + P L NRP YG ++H+ C R + + FG+ +G Sbjct: 239 LSSVLTALATGAELP-LAPLNRPLPWYGMMVHQGCTRNEYHEYRVEEDNFGE----KGCL 293 Query: 258 LYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVE 313 +H+GC GP G C+ L + G PC+GC + N+E Sbjct: 294 FFHMGCHGPLVTGPCNKLLWNQRSS--KTRAGVPCFGCTSPEFPQDHAFFETRNIE 347 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 120/279 (43%), Gaps = 24/279 (8%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++W+ C G + ++L A P++E L+ I L +H LS +++ L Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 110 KGQYVLVVDGSIPLK--DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +L V+GSI G+Y G ++ +R A A A++A+G+C+A+GG+ AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 168 VNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 NP+ LQ G VIN+ GCP +PH T + G P + Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQT-LAALAAGLPLE 182 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD +RP + ++H+ C R + + G + ++LGC+GP T C+ Sbjct: 183 LDAIHRPVSHFSTMVHQGCTRNEYHEYNIEDSTPGGKA----CMFFNLGCQGPLTRAVCN 238 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANV 312 T + V G PC+GC + + Sbjct: 239 TDLWNGVSS--KTRAGVPCFGCTSPNFPHDGDLFSTEKI 275 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 29/277 (10%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + + +P ++W+ + C G T S L HP + + +L L +H VL +A+ Sbjct: 1 MQSRNKPKLLWLQSITCNGNTHSFLN--HPELFS-ILSHFELVHHPVLESAY------TL 51 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 N ++ +L+V+G+ K+ G + +G + ++K A+ A II+ G+C+ +GG Sbjct: 52 ENVIKGEVPCDLLIVEGA--FKEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGG 107 Query: 163 VAAAGVNPTGAVSL---------QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 + +P + +I++PGCP +P + + +I G Sbjct: 108 IFK-ENDPEEISGFCFDGEEKTPRYESYASKLISLPGCPIHPRWL-SYLLLMIASGNKVP 165 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD +RP YG +H C R +F+ AK+FG +EG Y GC+GP T G+C+ Sbjct: 166 LDTLHRPVELYGYTVHTGCTRNEYFEWKIDAKQFG---VKEGCLFYEQGCQGPYTRGSCN 222 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLA 310 + + D +G PC+GC E G Sbjct: 223 KILWNDTSS--KTRVGTPCFGCTEPGFPQAGLYRTKT 257 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 74/296 (25%), Positives = 122/296 (41%), Gaps = 26/296 (8%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEE 100 + P V+WI + C GC+ SLL A ++ I + +H LS G + + Sbjct: 10 ASAKPGVLNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQ 69 Query: 101 NKHNALEKYKGQYVLVVDGSIPLK--DNGIYCMVAGE--PIVDHIRKAAEGAAAIIAIGS 156 + L+ + L V+G++ G + ++AG P+++ + + A A +A+G+ Sbjct: 70 ILEDCLQGRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGT 129 Query: 157 CSAWGGVAAAGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFL-AT 201 C+A+GG+ A G NPT A LQ G VIN+ GCP +P A Sbjct: 130 CAAYGGITAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDAL 189 Query: 202 VAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHL 261 LD RP F +L+H C R +++ A++ D G + ++ Sbjct: 190 ALLSARLLTASDLDTLGRPRFYADQLVHHGCTRNEYYEFKASAEKPSD----LGCMMENM 245 Query: 262 GCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP 317 GCKG + + +C+T + G G+ C C E G P Sbjct: 246 GCKGTQAHADCNTRLWNGEGS--CTRGGYACISCTEPGFEEPGHPFHQTPKVAGIP 299 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 30/281 (10%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ ++W+ A C G T S L +P +E L+ YH V+ + + + + Sbjct: 3 KKMRILWLSAITCNGNTHSFLN--YPHMEQ-FLDDFEFIYHPVIDSKY------SLQEIV 53 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA-- 164 VL+++G+I + G PI + I+ ++ I+ +G+C+ +GG+ Sbjct: 54 SNEIECEVLIIEGAISEEFQR-----GGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRE 108 Query: 165 -----AAGVNPTGAVSLQEVLPGK-TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 AG++ +L I+I GCP +P + T+ + I ++D+ Sbjct: 109 SDYKDTAGMHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTL-YAIKKSVLLRVDNFL 167 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFC 278 RP Y +H C R +F+ +FG+ EG Y GC+ P T+G+C+ + + Sbjct: 168 RPKEFYAYTVHNGCTRNEYFEYKVDNHKFGE---LEGCMFYDHGCQAPFTHGSCNKILWN 224 Query: 279 DVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN--VENQTP 317 +V G PC+GC E + N + P Sbjct: 225 EVNS--KTRAGVPCFGCTEPSFPRDNLFNTKKNMAIPEHLP 263 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 28/272 (10%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + VIWI A C GCT S L + + E ++ EYH + N LE Sbjct: 4 KLNVIWIDAVTCYGCTHSFLNYKEISS---LFEKVNFEYHPLF-----------LSNDLE 49 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 K +L+V+G++ + G + + I K A ++A+G+C+ +GG+ G Sbjct: 50 -IKQCDLLIVEGALKNNYPRL-----GYSLNELISKLFFKAKKVLALGTCAVYGGMFGEG 103 Query: 168 VNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRL 227 + +IN+PGCPP+P A V +I+ K LDD NRP + Sbjct: 104 LMYNKEQKGHYYKCRDKIINLPGCPPHPDWI-AFVLDMISENKKIALDDLNRPKDIFAYT 162 Query: 228 IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVA 287 H C R +F+ A+ FG +EG Y GC+GP T+ +C+ + + +V Sbjct: 163 SHMGCTRNEYFEWKIDAENFGT---KEGCLFYFQGCQGPFTHSSCNKVLWNEVSS--KPR 217 Query: 288 IGHPCYGCNEEGIGFHKGI--HQLANVENQTP 317 G PC+GC E + + P Sbjct: 218 AGTPCFGCTEPNFPKNDLFKTDTFMGIPANIP 249 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 144/408 (35%), Gaps = 107/408 (26%) Query: 12 GINRRDFMKL--CAALAATMGLSSKAAAEMAESVTNPQRP-PVIWIGAQECTGCTESLLR 68 G+ RRDF+K+ AL ++ LS + E+ +P ++W G C G T + + Sbjct: 2 GLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFID 61 Query: 69 ATHPTVENLV-------------------LETISLEYHEVLSAAFGHQVEENKHNALEKY 109 A +P+VE++V L I+L YH +L + AL Sbjct: 62 AMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMP-QDNMAYATMEMALNGE 120 Query: 110 KGQYVLVVDGSIPLKDNGIY---------CMVAGEP------IVDHIRKAAEGAAAIIAI 154 +VLVV+G++ + G+Y C +P + + + AAA++A Sbjct: 121 LDPFVLVVEGTM-FDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVAT 179 Query: 155 GSCSAWGGVAAAGV-----NPTGAVSLQE------------------------------- 178 G+C+ +GG+ A +PT A+ + + Sbjct: 180 GACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIY 239 Query: 179 -------------------VLPGKTVINIPGCPPNPHNFLATVAHIITY----GKPP--K 213 G +I+I PP + T+ + Y G P Sbjct: 240 SVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADD 299 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD NRP F YG H++C R F G FA EFGD C Y LGCKG T N Sbjct: 300 LDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKG--TEANSP 352 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQK 321 VGGV G C C G P + Sbjct: 353 APLLGWVGGVGGCTRGGVCIACTAPGFPDLYEPFYAPPNAPTIPSTTL 400 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 73/173 (42%), Gaps = 16/173 (9%) Query: 183 KTVINIPGCPPNPHNFLATVAHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHF 238 K + +PGCP N + L T+ ++I + P+LD RP +G +HE C R + Sbjct: 335 KPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNEKY 394 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNE 297 AG E G+ G CL+ +GCKGP NC + V GV P G C GC Sbjct: 395 RAGILRSEPGEP---SGACLFSVGCKGPI--SNCPYNKIGWVNGVGGPTRTGGVCIGCTM 449 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGG-VVGLVAG 349 G + P KP+ +A A +G+L + +AG Sbjct: 450 PGF-----MDAYEPYYKPLPAPVKPEASAATELAAGAAVVGVLAAYGIRKLAG 497 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ ++RR F+KL A L + A + ++W AQ+C G T SL Sbjct: 1 MLELR-LSRRQFLKLAGTTALLASLDWRKLIRRAFAELETGGISLVWFEAQDCAGDTTSL 59 Query: 67 LRATHPTVENLVLETISLE--------YHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 ++AT P + ++ +L +HE + +G + AL YVL+++ Sbjct: 60 IQATEPDIVEVLAGLTNLTPPGAVVLPFHETVMPEWGFGSIAHLLLALGGVYDPYVLILE 119 Query: 119 GSIP-------LKDNGIYCMVAG-EPIVDHIRKA 144 G++P +K + C + E +++ + K Sbjct: 120 GAMPPDEDLTGIKGTNMLCYIGDYETVMESLEKL 153 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F G + + DE R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRW-NRGTSFPIQAGHGCIGCSE 238 Query: 298 EGIGFHKGIHQ 308 EG I+ Sbjct: 239 EGFWDKGSIYD 249 >UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13 Tax=Methanococcales RepID=VHUG_METJA Length = 288 Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 97/280 (34%), Gaps = 80/280 (28%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V I C+GC SLL +E VL + + Y ++ + E Sbjct: 6 VKVGMIQLCGCSGCHISLLDLHDKLLE--VLPNLEIVYAPII------------ADPKEI 51 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 +G V +V+G I + + I + E + +IA G+C+A+GG+ G Sbjct: 52 PEGIDVFLVEGGIRNEHDEH-----------LIHEIREKSKIVIAWGTCAAYGGIPGLGN 100 Query: 169 --------NPTGAV---------------SLQEVL-PGKTVIN----IPGCPPNPHNFLA 200 N + L+E + P K I IPGCPP P Sbjct: 101 LYKKEELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIAD 160 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG---DEGHREGWC 257 + ++ G+ PKL +++ + C R+ F + F + C Sbjct: 161 AIIALLN-GEEPKL---------PTKIVCDECPRKK---ENVFPETFKRTHEGRPDPERC 207 Query: 258 LYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 L+ G C G T C G + G PC GC Sbjct: 208 LFEQGYTCLGFATRAGC---------GAKCPSAGVPCRGC 238 >UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5 Tax=Dehalococcoides RepID=D2BHA4_DEHSV Length = 312 Score = 87.7 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 95/281 (33%), Gaps = 67/281 (23%) Query: 59 CTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 C GC S+L P ++ VL + + + VL + L KG + + Sbjct: 12 CGGCELSILDIGEPLLD--VLPNLKIVHMPVLM-----------DHKLLGQKGDGI-KYE 57 Query: 119 GSIPLKDNGIYCM-VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV--------- 168 IP D GI + E + + + I+A+G+C+ +GG+ A Sbjct: 58 --IPEADLGIITGGIRNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLK 115 Query: 169 ------------NPTGAVSLQEVLPGKTV--------INIPGCPPNPHNFLATVAHIITY 208 +P G SL ++L I++PGCPP P + + + ++ Sbjct: 116 QVFSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLA- 174 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCER-RPHFDAGRFAK------EFGDEGHREGWCLYHL 261 + R + + C R G K +F + CL Sbjct: 175 ---------GKTFALPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCLNEQ 225 Query: 262 G--CKGPETYGNCSTLQFCDVGGVWP--VAIGHPCYGCNEE 298 G C GP T C+ + D P + PC GC Sbjct: 226 GLFCLGPVTKAGCNRILGADPSEEIPRCIKAYMPCRGCFGP 266 >UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2 Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA Length = 305 Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 94/278 (33%), Gaps = 79/278 (28%) Query: 55 GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV 114 C GC SLL H + +L+ + I +EY VL + E + V Sbjct: 10 QLSSCVGCHVSLLD-LHEKLLDLLEDAIEIEYCYVLV------------DQKEIPEHVNV 56 Query: 115 LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV------ 168 V++GSI +++ ++ + E A ++A+G+C+ +GGV Sbjct: 57 AVIEGSIRNEED-----------LEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDD 105 Query: 169 -----------------NPTGAVS--LQEVLPGKTVINI----PGCPPNPHNFLATVAHI 205 P V V P VI++ PGCPP P + + Sbjct: 106 ILEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVIT-A 164 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH---FDAGRFAKEFGDEGHREGWCLYHLG 262 I + P+L N + E C R + +F G + CL G Sbjct: 165 ILEDREPELPTTN---------LCEECPREKEDIPIEEIKFRTGQGRPDPDK--CLLEQG 213 Query: 263 --CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C GP T C G + G C GCN Sbjct: 214 YPCMGPATVAGC---------GAACPSRGLSCRGCNGP 242 >UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota RepID=MVHG_METTH Length = 308 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 100/291 (34%), Gaps = 80/291 (27%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + + +W+ C+GC S+ ++ V+E E+ VL Sbjct: 1 MAEKIKIGTMWL--GGCSGCHLSIADFHEKIID--VMEHADFEFSPVLM----------- 45 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 ++ V++++G I +N + + E A +I+ G+C+ +GG Sbjct: 46 DTKYDEIPELDVVIIEGGIVNDEN-----------REFAEELREKAKFVISYGTCAVYGG 94 Query: 163 VAAAG-------------------VNPTGAVSLQEV--LPGK-----TVIN----IPGCP 192 + N G + ++V L G+ VI+ +PGCP Sbjct: 95 IPGLRNLWDKDEVIEEAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCP 154 Query: 193 PNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD--AGRFAK-EFGD 249 P V ++T G+ +L + N + E C R + A F K +F Sbjct: 155 PRSDVAAEAVMALLT-GEEIELPETN---------LCEVCPREKPPEGLAMDFIKRQFEV 204 Query: 250 EGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + CL G C GP T C G +I PC GC Sbjct: 205 GKPEDDLCLIPQGLICMGPATVSIC---------GAECPSIAIPCRGCYGP 246 >UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S807_FERPL Length = 299 Score = 78.4 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 95/285 (33%), Gaps = 81/285 (28%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ + + A C+GC S +E L + E S + +K L Sbjct: 2 KKIRLAFYTASGCSGCILSFF-----DLEEFFLSS------ERFSVVWAPMFTNSKLEDL 50 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 EK + + ++GSI L ++ + ++ E + ++A+G+C+ +GGV Sbjct: 51 EKIERIDLTFIEGSIRLSEH-----------EEIVKILREKSEKVVALGTCAVFGGVPGL 99 Query: 167 GVNPTGAVSLQEVL-----PGKT------------------------VIN----IPGCPP 193 + L +V K VI +PGCPP Sbjct: 100 SNFYSDEEILSDVFDSDENAPKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPP 159 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRL-IHEHCERRPHFDAGRFAKEFGDEGH 252 + + L K D + R + + + C R+ + A + Sbjct: 160 SKNQLL----------KIIDFDFEER--WIVEKTSVCSVCPRKVE-EIKVSAVKRA-FEK 205 Query: 253 REGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 +G C G C GP T GNC + + PC GC Sbjct: 206 DDGRCFLLQGILCFGPLTPGNC---------EAACIKVNVPCRGC 241 >UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Chlorobiaceae RepID=B4SFA2_PELPB Length = 258 Score = 78.0 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 88/281 (31%), Gaps = 81/281 (28%) Query: 35 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAF 94 +A + +R + C GC L + + ++L Sbjct: 1 MGELIAHQGVSFERLKIASFDFTCCEGCQLQLANREST-----LADFLNLL--------- 46 Query: 95 GHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAI 154 + + + E++ + +++GSI +D V+ + K + A ++A Sbjct: 47 --DIRNFRELSSEQHDDYDIALIEGSISRQDE-----------VERLLKIRQQAKILVAF 93 Query: 155 GSCSAWGGVAAAG--------------VNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFL 199 G+C+ +GG+ + P + ++++ V ++IPGCP + Sbjct: 94 GTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKISDVVKVDLSIPGCPV-DKREV 152 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 + + G L P Y + + + CL+ Sbjct: 153 ERIVVSLVRGSQITL-----PK--YPVCV--------------------ECKAQLNTCLF 185 Query: 260 HLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 LG C GP T C+ + PC GC Sbjct: 186 ELGEICLGPITRAGCNAV---------CTTGKTPCLGCRGP 217 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 76.5 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGA 56 ++ GI RR FMK C+ AA +GL ++A ++ R PVIW+ Sbjct: 7 FYDVMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWVHG 59 >UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7 Tax=Deltaproteobacteria RepID=A0LP54_SYNFM Length = 324 Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 95/281 (33%), Gaps = 70/281 (24%) Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVL--SAAFGHQVEENKHNALEKYKGQYVL 115 C GC S+L +E +L+ I + + +L FG EEN E G Sbjct: 12 SCAGCEISMLNMGGLFLE--LLKEIRIVHMPLLFDHKYFGQAGEENFIGIPEADIG---- 65 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA---------- 165 +V G I ++ ++ K ++A+G+C+ GG+ A Sbjct: 66 IVSGGIRNEEQ-----------LEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDL 114 Query: 166 --------------AGVNPTGAVSLQE--VLPGKTVINI--PGCPPNPHNFLATVAHIIT 207 A N L L K +++ GCPP+P +L + + Sbjct: 115 FRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPD-YLGAMFRTLL 173 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCE-RRPHFDAGRFAKEF-------GDEGHREGWCLY 259 G+ P++ + + + C RR + + F ++ E CL Sbjct: 174 DGQWPEM---------PTKSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLL 224 Query: 260 HLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 G C GP T C+ L ++ PC GC Sbjct: 225 EQGLLCMGPVTRAGCAGL---HGNVPMCISARVPCRGCFGP 262 >UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3 Length = 227 Score = 73.0 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 55/254 (21%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + C GC SL ++ VL I L Y + ++ A + Sbjct: 7 VQLSSCCGCLVSLTDTYEKLLD--VLGAIDLVYSQTIADA-------------REIPEAD 51 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV-------AAA 166 +++V+GS+ L D+ ++ + + A ++A+G+C+A GG+ + Sbjct: 52 IILVEGSVCLDDHHA---------MEIAQDVGKKAKILVALGACAATGGITRFCRGGQMS 102 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 + + EV+ I PGCPP+P + + I + P + + Sbjct: 103 KPIHSSFSPITEVVKCDLAI--PGCPPSPEIIVGLITAAIEGDM-----EYLAPFSEFAK 155 Query: 227 LIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPV 286 E C G E C GC +C T V G P+ Sbjct: 156 NNTEAC--------GCDVIEKVVNKSLCMGC----GC----CAASCPTRAIEMVEGR-PL 198 Query: 287 AIGHPCYGCNEEGI 300 + C C G Sbjct: 199 ILNEVCIKCGCCGF 212 >UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X546_DESRD Length = 334 Score = 68.0 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 85/298 (28%), Gaps = 76/298 (25%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 +R + A C GC SLL +E + + Y V + K + Sbjct: 2 SRRMSIAMNWAGACGGCDVSLLDTQGKLLE--LTAVADVVYWPV--------ALDYKRSD 51 Query: 106 LEK--YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 LE K + + +G + + + R+ E ++A G+C+ GG+ Sbjct: 52 LEALPEKSVDIGLFNGVVRTSEQ-----------AEDARRLRERCRVLVAYGACACHGGI 100 Query: 164 AAAGV-------------------NPTGAVS---------------LQEVLPGK-TVINI 188 NP + + V+++ Sbjct: 101 PGLANQSDREEIFRVAYQDTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDV 160 Query: 189 ----PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR-- 242 PGCPP P L + + Y L A + + C R AGR Sbjct: 161 DYFLPGCPPTPERILDLLGVVQAYNAGDDLPPAGS-ILAPEATLCQECPRAETRRAGRMP 219 Query: 243 FAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + C G C GP T G C G + + PC GC Sbjct: 220 RLYRPHEIVADPETCFLEQGVICMGPFTRGGC---------GSACITVNMPCRGCFGP 268 >UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae RepID=B6YSK0_THEON Length = 246 Score = 67.6 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 84/280 (30%), Gaps = 100/280 (35%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISL----EYHEVLSAAFGHQVEENK 102 + + +C GC ++L + + + + E+H A Sbjct: 3 DKLKLAVFELTDCGGCALNIL-----FLYEKLFDLLEFYEITEFH---MATS-------- 46 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 L + V +V G++ + + + +++A + +IA+G+C+ G Sbjct: 47 ---LSEGSHYDVALVTGTVSSQRD-----------LALLKEARNHSDYLIALGTCATHGS 92 Query: 163 VAAA---------------GVNPTGAVSLQEVLPGKTVI-------NIPGCPPNPHNFLA 200 V A+ NP L K V+ +PGCP + + Sbjct: 93 VQASVEGSIREKLKRVYGDEGNP------MRALDSKPVVEYVAVDFALPGCPYDKNEVYQ 146 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + I +P K D Y + C+ + L Sbjct: 147 VLMDIAKGIEPVKKD--------YPVCV--ECKLNEY-----------------ECVLVK 179 Query: 261 LG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 G C GP TYG C+ + G C GC Sbjct: 180 KGLPCLGPITYGGCNAA---------CIRSGLGCIGCRGP 210 >UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus RepID=FRHG_METVO Length = 243 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 21/162 (12%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK--G 111 I CTGC SL ++ +L ++ L Y L+ E + +E+ G Sbjct: 7 IHMSGCTGCLISLTDTYEKLLD--ILGSVELVYALTLTGEKTEITETDDKILIERDIPGG 64 Query: 112 QYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV-------A 164 + +V+GS+ C+ + D + +++A+G+C+A GGV Sbjct: 65 IDIALVEGSV--------CLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQ 116 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 + + V + +V+ + +PGCPP+ + + + + Sbjct: 117 MSQPSHASFVPIGDVIKVD--LALPGCPPSTESIVKLLTAAL 156 >UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota RepID=FRHG_METBF Length = 259 Score = 67.2 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 34/165 (20%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + CTGC SL + + ++ + L Y L + Sbjct: 10 VHMSGCTGCLVSLAD-NNLGLIKILDDYADLVYCLTL-------------ADVRHIPEMD 55 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV-------AAA 166 V +V+GS+ L+D+ V+ I++ + + ++A+GSC+ +G + Sbjct: 56 VALVEGSVCLQDHES---------VEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHN 106 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNF--LATVAHIITYG 209 + + +++ + IPGCPP+P +A +A+++ G Sbjct: 107 QPQHESYLPIGDLIDVD--VYIPGCPPSPELIRNVAVMAYLLLEG 149 >UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I576_DESAP Length = 317 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 89/294 (30%), Gaps = 93/294 (31%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV- 114 A C GC ++L V+ V + + + + K+ +E Y+ ++ Sbjct: 11 AAACGGCDVAILDIHEKIVD--VAAVADIVFWPI--------AVDFKYADVEGYEDGFID 60 Query: 115 -LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI-IAIGSCSAWGGVAAAGV---- 168 + G+I + +H+ K + + +A GSC+ GG+ Sbjct: 61 VCLFHGAIRNSEG------------EHVAKLLRKKSKVMVAFGSCAISGGIPGLANFKQK 108 Query: 169 ---------------NPT------------GAVSLQEVLPGKT----VINI----PGCPP 193 NP G + L E V+++ PGCPP Sbjct: 109 NDIFYRVYIESQSTQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFMPGCPP 168 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNRPTFAY----GRLIHEHCERRPHFDAGRFAKEFGD 249 A + +I G P P A+ + + C R + K+F Sbjct: 169 TSAQIWAVI-QVIASGALP-------PKGAFVGCENQTLCNTCTRTK---TDKKVKKFYQ 217 Query: 250 EGH---REGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 CL G C GP T C G V+ PC GC Sbjct: 218 PYQIITDPEKCLLEQGLTCMGPVTRAGC---------GNQCVSANQPCTGCYGP 262 >UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT65_9GAMM Length = 268 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 86/276 (31%), Gaps = 89/276 (32%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVL--SAAFGHQVEENKH 103 RP + C GC +L+ + +SL L H E Sbjct: 11 APRPKIAVHKFSSCDGCQLALIN-----------DAVSLL---TLAEMVDIVHFAEAGP- 55 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 L+++ + ++GS+ + + ++K E A +IAIG+C+ GG+ Sbjct: 56 --LDEFADVDIAFIEGSVNTHHD-----------IPRLQKIREKAKYVIAIGACAVAGGI 102 Query: 164 AAAGVNPTGAVSLQEVLPG--------------------KTVIN----IPGCPPNPHNFL 199 A N T A L E K +N I GCP L Sbjct: 103 QALR-NYTNAAELLEWQKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQIL 161 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 + ++ +G P+ +++ C H A ++ CL Sbjct: 162 KAIRQLL-FGVEPE------------KVVDPVCTSCKH------ASVTCVMVAKDEPCL- 201 Query: 260 HLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 GP T C G +G CYGC Sbjct: 202 -----GPVTADGC---------GAICPKLGRGCYGC 223 >UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria RepID=Q2LYD8_SYNAS Length = 253 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 79/270 (29%), Gaps = 88/270 (32%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC + ++ +L I + + + + Sbjct: 7 KPKVAFFDFACCEGCQLQVANLGEALLD--ILGAIDVVEFREVMSE-------------K 51 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 K V +V+GSI E IRK + +A +IA GSC+ GGV Sbjct: 52 WDKNYDVAIVEGSI-----------TDEHAEQRIRKIRDRSAVLIAYGSCATIGGVNGMK 100 Query: 168 VN----------PTGAVSLQEVLPGKTV---------INIPGCPP-NPHNFLATVAHIIT 207 + L + + + IN GCP +P Sbjct: 101 NSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFIN--GCPVYHPEVI--------- 149 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKG 265 + K + P + C E C+Y G C G Sbjct: 150 --EVLKCALRGVPYAVPDNPVCSEC------------------KLNENVCMYDRGVACLG 189 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 P T C+ W + G+ CYGC Sbjct: 190 PWTKAGCN---------SWCINNGNICYGC 210 >UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L5Y5_KORCO Length = 319 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 85/299 (28%), Gaps = 83/299 (27%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETIS----LEYHEVLSAAFGHQVEEN 101 + W C GC E+ + + + + I + + V VE+ Sbjct: 3 KAKIAFYW--CASCGGCEEA-----QVDLADKLFDLIEAADIVLW-PVAMDFKKEDVEKV 54 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 ++ V +++G I ++ + ++ + +IA GSC+ G Sbjct: 55 GDGSI------DVAIINGGIRTSEH-----------EEMVKLLRRKSKLVIAYGSCAHMG 97 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVIN---------------------------------- 187 G+ A T L+ V + Sbjct: 98 GIPALANAYTRESILKYVYEEAPTVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVI 157 Query: 188 -----IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFA-YGRLIHEHCERRPHFDAG 241 IPGCPP P V+ I++ PPK Y ++E + D Sbjct: 158 DVDYYIPGCPPTPEITWEAVSSILSGNLPPKGHVFGSDRALCYECPLNETKPEKVTIDTI 217 Query: 242 RFAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + + C G C GP T G C L + PC GC Sbjct: 218 KRVHQ---TELDPNKCYLTQGVLCMGPVTRGGCKAL---------CIKGNMPCTGCFGP 264 >UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL1_HALUD Length = 266 Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 91/274 (33%), Gaps = 86/274 (31%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 +T +P V + C G ++ +E+ +L+ + Sbjct: 1 MTGEDKPRVAFFDFTGCEGDQLQVIN-----LEDRLLDL------------VEVVEVVSF 43 Query: 103 HNALEKYKGQY-VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 A+ ++ +Y + V+G + + + + A ++A+GSC+A+G Sbjct: 44 REAMTEHSDEYEIAFVEGGVATAHDER-----------RLTDIRDNADVVVALGSCAAFG 92 Query: 162 GVAAAGVNPT-----------GAVSLQEVLPGKTVIN-------IPGCPPNPHNFLATVA 203 G+ A + A S+ + + + IPGCP + FL V Sbjct: 93 GINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVEYEIPGCPIDREEFLGAVT 152 Query: 204 HIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG- 262 ++ G P + + P C +FA+ C + G Sbjct: 153 ALVN-GAEPSIPNY--PVCL-------EC---------KFAEN---------TCAFERGE 184 Query: 263 -CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 C GP T G CS V+ G C+GC Sbjct: 185 TCLGPITRGGCSAT---------CVSAGTHCWGC 209 >UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C420D3 Length = 319 Score = 64.2 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 35/185 (18%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 E +P + +I CTG SL + L+ + + + Y L Sbjct: 83 EVEKVADKPKIGYIHMSGCTGDGMSLTENYDI-LSTLLTDMVDIVYGTTL---------- 131 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 L + + +V+GS+ L+D + + + + E A + A GSC+ Sbjct: 132 ---VDLWEMPEMDLALVEGSVCLQDE--------HSVKELM-EVREKAGLVCAFGSCAMT 179 Query: 161 GGV-------AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKP-- 211 G A V + +++ I PGCP +P V +I Sbjct: 180 GCFTRYARGGQLAQPKHESFVPISDLVKVDCAI--PGCPASPEIIAKVVVALINGDMDYL 237 Query: 212 -PKLD 215 P LD Sbjct: 238 QPMLD 242 >UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=3 Tax=Euryarchaeota RepID=Q0W6U0_UNCMA Length = 306 Score = 64.2 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 65/196 (33%), Gaps = 53/196 (27%) Query: 135 EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG-----------------VNPTGAVSLQ 177 + ++ ++K + A +IA G+C+ +GGV+ T + Q Sbjct: 63 KENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIPNQ 122 Query: 178 EV-------LPGKTVIN----IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 ++ VI I GCPP FL + + G+ P L + Sbjct: 123 DIPDLLYRGYAVGDVIKVDYYITGCPPK-EFFLRQILLPLIEGRIPDLQK---------K 172 Query: 227 LIHEHCERRPHF--DAGRFAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGG 282 + C+R D + G + CL G C G T+G C L Sbjct: 173 SVCSECDREMVLVKDWKIKRRYEGVPEEK--TCLLGQGYICLGSVTFGRCHAL------- 223 Query: 283 VWPVAIGHPCYGCNEE 298 G PC+GC Sbjct: 224 --CTHHGIPCHGCGGP 237 >UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=D2REQ3_ARCPR Length = 321 Score = 63.8 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 93/297 (31%), Gaps = 80/297 (26%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLE-YHEVLSAAFGHQVEENKHNALE 107 + ++ C GC +++ + V+ LE + + + ++ +E ++ Sbjct: 3 LKLAYLLVGGCGGCDMAVVDLSEKLVDA--LEHLEIVFWAPTVADVKYKDLEAMPDQSI- 59 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + ++ G + K+N ++ + I+A G C+A GG+ Sbjct: 60 -----DLGLISGMVRNKENEH-----------LVKVMRQKCKIIVAFGICAALGGIPGMA 103 Query: 168 V-------------------NPTGAVS------------LQEVLPGKTVIN--------I 188 NP + L E L I+ + Sbjct: 104 NMHKNEELFENAYIKSPSTDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYV 163 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG--RFAKE 246 GCPP+ + V +IT G P G+ + + C R P F KE Sbjct: 164 GGCPPHHDHVAKVVEAVIT-GNLPPKGSW----ITNGKAVCDVCARNPAVKGKTREFVKE 218 Query: 247 ---FGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + E CL + G C GP T G+C G + C GC Sbjct: 219 VKRMHEGIPDEEECLLNQGYLCLGPVTQGDC---------GALCPKVNIRCAGCGGP 266 >UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXG1_OPITP Length = 334 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 84/296 (28%), Gaps = 77/296 (26%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 +P V + C GC E+++ + ++ E + + + V V+ + Sbjct: 2 PKPKVAFYWCAACGGCEEAIVDFAE-DILGVI-EAVDIVFWPVAMDFKKKDVDALPDQGI 59 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 ++G+I + E + +R+ + +IA G+C+ GG+ Sbjct: 60 TAT------FLNGAIRTSEQ--------EEMAQLLRR---KSQFLIAYGACAHLGGIPGL 102 Query: 167 GVNPTGAVSLQEVLPGKTVIN--------------------------------------- 187 L V I+ Sbjct: 103 ANQFDREQLLSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYY 162 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 IPGCPP P + GK P P A + C R+P A EF Sbjct: 163 IPGCPPTPK-ITKAAITALLEGKLPPRGSVLAPDVA----LCNECARKPSKPATLSFTEF 217 Query: 248 GDEGHRE---GWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + CL G C GP T C L A PC GC Sbjct: 218 KRPHLAKIDPDLCLLAQGFVCMGPATRAGCEAL---------CPAGNMPCTGCFGP 264 >UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3 Tax=Methanobacteriaceae RepID=A5UM99_METS3 Length = 276 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 33/184 (17%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVL-ETISLEYHEVLSAAFGHQVE 99 + T +P + +I CTG SL + + ++VL E + + Y + L Sbjct: 40 KQETATNKPRIGYIHLSGCTGDGMSL--TENYDILDVVLTEMVDIVYGQTL--------- 88 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 L + + +++GS+ L+D + + + +A E +A I A GSC+ Sbjct: 89 ----VDLWEMPEMDLCLIEGSVCLQDE--------HSVHELL-EAREKSALICAFGSCAL 135 Query: 160 WGGVAAAGVNPTGAVSLQE-VLPGKTVINI----PGCPPNPHNFLATVAHIITYGKP--- 211 G A E LP +++ + PGCP P TV + Sbjct: 136 NGCFTTYARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCNGDMEYLQ 195 Query: 212 PKLD 215 P LD Sbjct: 196 PALD 199 >UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus RepID=B5YB68_DICT6 Length = 180 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 61/195 (31%) Query: 52 IWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE-KYK 110 +W C+GC S L ++ ++E I+ G ++ L+ + Sbjct: 9 VWCEG--CSGCHMSFL-----DMDERLVELIN----------KGLEINATPITDLKIPDE 51 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV-- 168 G + +++G++ + + ++ E I+A+G C+ +GG+ Sbjct: 52 GTDIGIIEGAVATDHH-----------EEEVKMMRERCKIIVALGDCAVFGGIPTMRNYI 100 Query: 169 --------------------NPTGAVSLQEVLPGKTVIN--------IPGCPPNPHNFLA 200 PT + + + LP +N +PGCPP+ Sbjct: 101 PREELLERGYITTESTVDGKIPT-SPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYY 159 Query: 201 TVAHIITYGKPPKLD 215 + + G+ PKL+ Sbjct: 160 VLKE-VLEGRIPKLE 173 >UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI Length = 251 Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 84/270 (31%), Gaps = 89/270 (32%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC ++L E +LE I + + G + Sbjct: 2 KPKVAFFEFTSCEGCQLTVLDTLQRHPE--LLEVIEIVQFREAMSERGEDYQ-------- 51 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDH-IRKAAEGAAAIIAIGSCSAWGGVAAA 166 + ++GS C P + IR+ E A ++A+G+C+ GG+ A Sbjct: 52 ------IAFIEGS---------CT---RPSDEAKIREIREQAQIVVALGACAHLGGINAI 93 Query: 167 GV-NPTG------------------AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 P A L V+ VI PGCP + F V H++ Sbjct: 94 RNRMPLEQTREYVYGDKKDWFETYPARPLSAVIEVDAVI--PGCPIDRKEFATAVTHLLQ 151 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKG 265 G+ P + D C D E C++ G C G Sbjct: 152 -GRKPAIPDYP------------LCI---------------DCKLTENVCMFLRGQTCLG 183 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 P T C + A G C GC Sbjct: 184 PVTRAGCEAI---------CPAQGQGCEGC 204 >UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM Length = 184 Score = 61.5 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 58/206 (28%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 +N R W C GC SLL ++ + + + Y V Sbjct: 5 ASNKVRLATAWF--GGCAGCHMSLLDLDERLIDVV--GLVDIVYSPV------------- 47 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + +G V +V+G+ +N V + E + +IA G C+ G Sbjct: 48 ADIKVFPEGVDVTLVEGACCNDEN-----------VHLAHEVRERSKIVIAFGDCAVTGN 96 Query: 163 VAAA-------------------GVNPTGAVS------LQEVLPGKTVINI----PGCPP 193 V + PT + + +VLP VI + PGCPP Sbjct: 97 VPSMRNRLDRDQMINSVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPP 156 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNR 219 +P A + ++ G+P L ++ R Sbjct: 157 DPERIWAAIVALLK-GEPVLLPEEMR 181 >UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella marina EX-H1 RepID=C0QP84_PERMH Length = 249 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 82/262 (31%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 C GC S + + + + E + ++Y + +++ + Sbjct: 9 FASCDGCQISFFDISE--MLSHLEEKVRIKYF-------------IEGQDRNEFERFDIS 53 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA----------- 164 ++GS+ + + ++K + + ++ IG+CS+ GG+ Sbjct: 54 FIEGSVSTPEQ-----------EEKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYKDI 102 Query: 165 --AAGVNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKP--PKLDD 216 + P SL+ P I+ I GCP N L + +I KP P+ Sbjct: 103 VCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVILGKKPYNPE--- 159 Query: 217 KNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ 276 + C+R+ FG C G T C Sbjct: 160 ---------YPVCMECKRKG----NPCVIIFGKP------------CLGSITSAGC---- 190 Query: 277 FCDVGGVWPVAIGHPCYGCNEE 298 G + CYGC Sbjct: 191 -----GAVCPSYNRGCYGCFGP 207 >UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4 Tax=Anaeromyxobacter RepID=Q2IH66_ANADE Length = 491 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 82/297 (27%), Gaps = 81/297 (27%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC E+++ +LE + + V ++K +E Sbjct: 168 KPRVAFYWNASCGGCEEAVVDLGDGFAG--LLERVEVVLWPV--------ATDHKRADVE 217 Query: 108 KYK--GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 G + V+G++ L + + R A ++A G+C+ GGV Sbjct: 218 ALPDGGIDLAFVNGAVRLDEQ-----------EEWARLLRRKARTVVAFGACAHLGGVVG 266 Query: 166 AG------------------------VNPTGAVSLQEVLPGKTVI--------------- 186 G P G V V+ Sbjct: 267 LGNLSEPEALLEAAYRAPPSVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSVDY 326 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK- 245 IPGCPP+P A + + PP P + E C R+ Sbjct: 327 TIPGCPPSPAVVQAAL-DALLGDAPPPRGAVLAP----DVSLCEDCPRKGSRPERIELHA 381 Query: 246 --EFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C G C GP T C V G PC GC Sbjct: 382 LRRLATSAVDPELCFLAQGLVCMGPATRQGC---------QPGCVEAGMPCRGCFGP 429 >UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUT4_SULAA Length = 249 Score = 60.3 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 83/262 (31%), Gaps = 83/262 (31%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 C GC S + + E LE S++Y + ++ Y+ Sbjct: 8 FSSCDGCQLSFINLSGELAE---LENFSIDYF-------------LEGQSVNNYEYFDFS 51 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV--NPTGA 173 V+GS+ + ++ I+ E + ++ IG+C+ GGV + N Sbjct: 52 FVEGSVSTTEE-----------IERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDI 100 Query: 174 VSL-----------QEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 ++ + LP V+ I GCP + + + I GK P + N Sbjct: 101 KTVYNTVDITKNVLENALPISQVVKVDFEIRGCPVSTD-VVKDFINSILIGKSPH--NYN 157 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQ 276 P C+RR CL L C GP T C+ L Sbjct: 158 YPVCL-------ECKRRG------------------NICLLVLNKPCLGPITTAGCNAL- 191 Query: 277 FCDVGGVWPVAIGHPCYGCNEE 298 ++ CYGC Sbjct: 192 --------CPSVNRGCYGCFGP 205 >UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM Length = 300 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 84/276 (30%), Gaps = 69/276 (25%) Query: 59 CTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 C GC ++L ++ +LE IS+ + +L + + + V +V Sbjct: 14 CAGCEVAILDQGELLLD--ILERISIVHAPILMDSKYRDP--AGDSDVVSIPRADVGIVS 69 Query: 119 GSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG----------- 167 G I ++G+ A D + IA GSC+ GG+ + Sbjct: 70 GGI-RTEHGLAVAKAVRESCDIL----------IANGSCACMGGIPSLANLVPPDVLKQG 118 Query: 168 -VN-----PTGAVSLQEVLPGKTVIN--------IPGCPPNPHNFLATVAHIITYGKPPK 213 N G L + IN +PGCPP P + A + G+ Sbjct: 119 VPNLEHGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPP-PTHLFAAALQAVLEGRSFD 177 Query: 214 LDDKNRPTFAYGRLIHEHCE-----RRPHFDAG-RFAK--EFGDEGHREGWCLYHLG--C 263 L + + C R D G +F + + + CL G C Sbjct: 178 LPE---------DTVCNECSKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGFFC 228 Query: 264 KGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 G T C + PC GC Sbjct: 229 MGAATRSGCGAR---------CTQVNMPCRGCMGPK 255 >UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A155_THESM Length = 267 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 70/215 (32%) Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 ++ K + ++GS+ ++ V+ ++K E A +IA+GSC+ G Sbjct: 49 LERGSDEDKEVDIAFIEGSVSTQEE-----------VELVKKIREKAKIVIAVGSCAVHG 97 Query: 162 GVAA-------------------AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 GV + P A +++ + + GCPP +FL + Sbjct: 98 GVQSWDKDKEFNELWKTVYGDAHVKFEPKMAEPVEKYIKVD--YKLYGCPPEKKDFLYAL 155 Query: 203 AHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG 262 ++ P +D Y + C R L G Sbjct: 156 GTLLIGSWPEDID--------YPVCV--ECRLRG-----------------NPCLLIEKG 188 Query: 263 --CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 C GP T C A C GC Sbjct: 189 EPCLGPLTVAGCDAR---------CPAFNIACIGC 214 >UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI4_EGGLE Length = 261 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 58/259 (22%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKH 103 P P V+ +G C GC + A ++ VL I L Y L A+ E+ Sbjct: 10 EKPSAPRVVVVGLASCFGCQLQITNAEAHLLD--VLGQIDLRY-WQL-ASSDPMPEDF-- 63 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 V +++G++ +++ +R E A AIIA+G+C+ G+ Sbjct: 64 ---------DVAIIEGAVTTEESEA-----------TVRSLREKAGAIIAVGACATTAGI 103 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIP-GCPPNPHNFLATVAHIITYGKPPKLDDKNR--P 220 A E PG+ +P C + G +D + R P Sbjct: 104 PGMA-----AEGFLE-RPGQVYDRVPSAC--------GDMVAPRAVGAVIDVDFEVRACP 149 Query: 221 TFAYGRLIHEHCERRPHFDAGRF--AKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQ 276 +Y + + +R + + GD E C + G C G T C Sbjct: 150 IDSYDFI--DVLQRALYGSNKTYPSRTMCGDCKRNETSCFFGKGQLCLGLVTTAGC---- 203 Query: 277 FCDVGGVWPVAIGHPCYGC 295 G V +G PC GC Sbjct: 204 -----GAKCVNLGRPCNGC 217 >UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC56_9ZZZZ Length = 182 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 42/187 (22%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 + + + R +W+ C+ P L A G+ + Sbjct: 33 LVKKLITWGRKNSLWVVHLTTGCCS--------PEFAAL--------------AGAGYDM 70 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA---AEGAAAIIAIG 155 E + + +L+++G + K + + +++ +IA+G Sbjct: 71 ERFGPLVMAAMRQCDILIIEGQVADK------------MAEVVKRTYDQMPDPKYVIAVG 118 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLD 215 +C+ GG + + + + +++P + +PGCPP P +++ + + T LD Sbjct: 119 NCAISGGFY--WDSYSMVMGIDKIIPVD--VYVPGCPPRPEDWIDAIRLVQTRMDKEGLD 174 Query: 216 DKNRPTF 222 + RP Sbjct: 175 RE-RPLL 180 >UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter RepID=Q39QE2_GEOMG Length = 316 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 95/279 (34%), Gaps = 78/279 (27%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 + W+ +C+GC +++ + VLE+++++ VL ++ Sbjct: 6 INLEWLS--DCSGCHVAIVDLHEKILA--VLESVTIQRCPVL-------------TDVKD 48 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG- 167 Y + +V G+I + + + + + IIA GSC+ +GG+A AG Sbjct: 49 YPKAKLGLVSGAIRTEHDRHAAI-----------EMRKSCDLIIAWGSCAVYGGIAGAGN 97 Query: 168 -------------VN--------PTGAVSLQE--VLPGKTVINI----PGCPPNPHNFLA 200 N PT VS E V P +VI++ PGC P+P Sbjct: 98 VHSRQEIIDAVYIGNKTTATHAPPTKEVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVFD 157 Query: 201 TVAHIITYGKPPKLDDKNR-PTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 + ++ + R P A G + C R+ ++ + C Sbjct: 158 ALLALL----------EGRSPRTATGESVCARCRRKMEKTEVDRIRKNSEGVPDPDRCFL 207 Query: 260 HLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 G C G T C G PC GC Sbjct: 208 SQGYLCMGSVTLDRC---------MSPCPLNGIPCSGCA 237 >UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI Length = 252 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 76/260 (29%), Gaps = 86/260 (33%) Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVV 117 C GC L P+ + E + Y + K + + V Sbjct: 14 SCDGCQAIFL--DLPS----LWEHLDFRY-------------WFLGKSENKLEPIDIAFV 54 Query: 118 DGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA------------ 165 +GS+ ++ + I++ E A ++ IG+C+ GG+ A Sbjct: 55 EGSVSTQEE-----------AEFIKEVREKARLLVTIGACATSGGIQALRNFGSLEEFSS 103 Query: 166 AGVNPTGAVSLQEVLPGKTVINIP----GCPPNPHNFLATVAHIITYGKPPKLDDKNRPT 221 P L+ P + + GCP NP + L + + + P++ Sbjct: 104 VYPKPEFIKVLKRSTPISEHVKVDYEIYGCPINP-HILENFVKALLHSRRPEIPSYP--- 159 Query: 222 FAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL---YHLGCKGPETYGNCSTLQFC 278 C + R C+ Y + C GP C Sbjct: 160 ---------LCM---------------ECKLRGNICVMDAYRIPCLGPVVRAGC------ 189 Query: 279 DVGGVWPVAIGHPCYGCNEE 298 G ++G CYGC Sbjct: 190 ---GALCPSVGRGCYGCFGP 206 >UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1 Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU Length = 293 Score = 59.9 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 82/271 (30%) Query: 56 AQECTGCTESLLRATHPTVENLVLET-ISLEYH-EVLSAAFGHQVEENKHNALEKYKGQY 113 A C+GCT S+L + + + + + + L G + Sbjct: 9 AHGCSGCTMSML-----DLGERMNDFRMRVAWAAPTL----GDGKYDRIPEV-------D 52 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV---------- 163 ++G I L ++ V+ +R+ E + ++A G C++ GG+ Sbjct: 53 YAFIEGGIGLSEH-----------VEIVRELREKSETLVAFGICASCGGIMGLANLHSKE 101 Query: 164 ------AAAGVNPTGAVSLQEVLPGKTVIN--------IPGCPPNPHNFLATVAHIITYG 209 + + G + + E+L ++ I GCPP P Y Sbjct: 102 EILEDVFGSAKSSVGDLRIPEMLEFVKPLDSVVEVDCYIGGCPPTPEQI---------YN 152 Query: 210 KPPKLDDKNRPTFAYGRLIHEHCERR--PHF-DAGRFAKEFGDEGHREGWCLYHLG--CK 264 + + R G+ + E C R F + RF + E C G C Sbjct: 153 AFKAIFEGERGWITSGKSVCEFCSRNLSEKFGEVSRFLRVPDKE------CFLKQGILCF 206 Query: 265 GPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 GP T G+C PC GC Sbjct: 207 GPATQGDC---------MASCPNSNSPCRGC 228 >UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT Length = 179 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 60/199 (30%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + W+ A C GC S L ++ + + + + + ++ A Sbjct: 3 KAKVATFWLEA--CAGCHMSFLDLDERLID--LFQNVEILFSPIVDA------------- 45 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV-- 163 + V V+ G + V+ +K E ++A G C+ +GG+ Sbjct: 46 -KDIPNIDVGVLSGG-----------LGNVEEVELAKKMRERCKYLVAWGDCAVFGGINC 93 Query: 164 -----------------AAAGVNPTGAVS---LQEVLPGKTVIN--------IPGCPPNP 195 A+ VNP G V + E+LP I+ +PGCPP+ Sbjct: 94 MRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDA 153 Query: 196 HNFLATVAHIITYGKPPKL 214 ++ G+ PK+ Sbjct: 154 DTIYYVFKELLA-GRVPKV 171 >UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria RepID=HOXY_RALEH Length = 209 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 70/214 (32%), Gaps = 59/214 (27%) Query: 33 SKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSA 92 + A + + V IG C GCT S L ++ +L + L Sbjct: 15 PATPMDPALAANREGKIKVATIGLCGCWGCTLSFL-----DMDERLLPLLEKV---TLLR 66 Query: 93 AFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAII 152 + ++ + V+G + ++N ++ + E +I Sbjct: 67 SSLTDIKRIPERCAIGF-------VEGGVSSEEN-----------IETLEHFRENCDILI 108 Query: 153 AIGSCSAWGGVAA-------------AGVNPT----GAVSLQEVLPGKTVIN-------- 187 ++G+C+ WGGV A A VN GA ++ P I Sbjct: 109 SVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHE 168 Query: 188 -------IPGCPPNPHNFLATVAHIITYGKPPKL 214 IPGCPP+ + ++ G+P L Sbjct: 169 VVKMDYFIPGCPPDGDAIFKVLDDLVN-GRPFDL 201 >UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI Length = 180 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 56/194 (28%) Query: 53 WIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQ 112 W+ C+GC S L +E ++E + + Y ++ + E Sbjct: 13 WLDG--CSGCHMSFLDLDERLIE--LVEHVEIVYSPLV-------------DTKELPARV 55 Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN--- 169 V +++GSI +D+ + + + +++G C+ G V A + Sbjct: 56 DVGILEGSISSEDD----LEKARLFRERCTRL-------VSLGDCAVTGNVPAMRNHFKL 104 Query: 170 -------PTGAVSLQEVLPGKTV-----------------INIPGCPPNPHNFLATVAHI 205 V+LQ +P + V + +PGCPP+ ++ + Sbjct: 105 ADVFDRAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPPSADAIWHVLSEL 164 Query: 206 ITYGKPPKLDDKNR 219 I G+ P + R Sbjct: 165 IA-GRMPDPNAVTR 177 >UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3 Tax=cellular organisms RepID=B6YT72_THEON Length = 266 Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 47/176 (26%) Query: 52 IWI---GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 +W+ + C GC +L P + E + Sbjct: 7 VWVFHVDSGSCNGCDIEILDVLTPY----------------------YDAERLGIKLVPS 44 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG- 167 + L+V G PL Y + A + ++AIG+C++ GG+ G Sbjct: 45 PRHADALLVSG--PLTRQTYYAVKAAYEAM------PPKPRIVVAIGTCASSGGIFYNGY 96 Query: 168 ----VNP--------TGAVSLQEVLPG-KTVINIPGCPPNPHNFLATVAHIITYGK 210 NP TG + + G K + IPGCPP+P L +A ++ + Sbjct: 97 PIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEEILYGLAQLLGLKE 152 >UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms RepID=A3DKH2_STAMF Length = 165 Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 41/162 (25%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 P +I C GC +L A P Y E Sbjct: 31 PWLIHFNTGACNGCDIEVLAAITP------------LYDP----------ERFGIKLAPS 68 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA---AAIIAIGSCSAWGGVAA 165 + +LVV G++ K + +++ E ++A+G+C+ GGV Sbjct: 69 IRHADILVVTGAVTKKA------------AERLKRLYEQMPDPKFVVAVGACAISGGVF- 115 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 + + +V+P I +PGCPP P L + ++ Sbjct: 116 -HNSYSVLAGTDKVIPVD--IYVPGCPPRPEAILDGIVKLLK 154 >UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM Length = 282 Score = 57.6 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 82/262 (31%) Query: 58 ECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVV 117 C G ++L L+ E + A+ +E + + +V Sbjct: 21 GCAGDQLAILN----DTTVLLGLAQRAEICSFIMASSQESDQEGRLDLA---------IV 67 Query: 118 DGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA----------- 166 +GSI C ++ +R + + A++A+G+C+ WGG+ A Sbjct: 68 EGSI--------CSEQERTALEKLR---QRSDALMALGTCAVWGGLPAMNAKTIPIHTMK 116 Query: 167 ---GVNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 + T +E P + + GCP F V I+ +P + D Sbjct: 117 EQVYGDSTVFPGAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNGVRPVQTD---- 172 Query: 220 PTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG---CKGPETYGNCSTLQ 276 A + E CL C GP T C Sbjct: 173 ------------------------ASVCSECRIAENRCLVQAERRVCCGPITLAGCKAR- 207 Query: 277 FCDVGGVWPVAIGHPCYGCNEE 298 + G PCYGC Sbjct: 208 --------CIQYGQPCYGCRGP 221 >UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU9_ACEP3 Length = 165 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 37/185 (20%) Query: 31 LSSKAAAEMAESVTNPQRPPVIWIG--AQECTGCTESLLRATHPTVENLVLETISLEYHE 88 + +M R P++ C GC E +L Y Sbjct: 8 FDAAFRQDMRRMKPVGPRWPLLLFHVDTGGCGGCGM---------------ELQALRYAP 52 Query: 89 VLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA 148 G + NA VL++ G++ P+++ +A Sbjct: 53 YDMEGAGFGFVTSPRNA-------DVLLITGALTRAMA---------PVLEAAWQAMPTP 96 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITY 208 +IA+GSC+ GG+ N T L+ + + IPGCPP P + L + + Sbjct: 97 KGLIAVGSCALDGGMF--PENYTVLGGLERRVSID--LKIPGCPPAPQDVLNGLCSLFGK 152 Query: 209 GKPPK 213 P Sbjct: 153 QAVPP 157 >UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q1_KORCO Length = 258 Score = 57.2 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 79/246 (32%) Query: 74 VENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA 133 +E+++L+ +SL E ++ E + V+GS+ + + Sbjct: 24 MEDILLDLLSLV----------DIAEFKLASSKEYDGKVDIAFVEGSVSTERD------- 66 Query: 134 GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA----------------GVNPTGAVSLQ 177 +++I++ + ++A+G C+ WGG+ A+ N G + Sbjct: 67 ----LEYIKRIRGNSKILVALGDCAVWGGIQASTSGQDPKELMRSVYKTEKNLYGFLGEH 122 Query: 178 EVLPGKTVIN--IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERR 235 + + ++ I GCP F + ++ P+L D P C Sbjct: 123 KGISEVVPVDYEIQGCPIEGKEFARVLIDLVR-DVKPELPDY--PV----------CI-- 167 Query: 236 PHFDAGRFAKEFGDEGHREGWCLY---HLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPC 292 + RE CL L C GP T C + C Sbjct: 168 -------------ECKVREIPCLIVERGLPCLGPITVAGCDAR---------CPSYNTAC 205 Query: 293 YGCNEE 298 GC Sbjct: 206 IGCRGP 211 >UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV9_THEON Length = 225 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 40/159 (25%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ V+ + C GC S++RA +P + +L+ IS Sbjct: 2 EKLKVLHVDVGGCEGCNVSIIRA-YPKLMDLIELDIS-----------------YLRKDE 43 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 K V ++ G + + I++ +++ E A ++A GSC+ + G+ Sbjct: 44 CKLDEYDVAIITGGACMNEPR---------ILEELKEIREKAHTVVAFGSCATFSGILRF 94 Query: 164 --AAAGVNPTGAVSLQEVLPGKTVIN----IPGCPPNPH 196 P + P +VI IPGCPP P Sbjct: 95 CRGGQEPRPDH----RNFQPINSVIKVDYSIPGCPPTPQ 129 >UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria RepID=B8G3U7_CHLAD Length = 177 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 61/199 (30%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 R IW+ C+GC SLL ++ ++E AA V + Sbjct: 5 RIATIWL--GGCSGCHMSLL-----DLDEWLIEL----------AAQADLVYSPIADVKR 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V +++G+I ++ +A + I++ G C+ G V A Sbjct: 48 FPSHVDVTLIEGAIANNEHLELAHIARR-----------NSKIIVSFGDCAVSGNVTALR 96 Query: 168 VNPTGA---------------------------VSLQEVLPGKTVINI----PGCPPNPH 196 NP G+ V L +V+P VI + GCPP+ Sbjct: 97 -NPLGSPEQLLQQVYIEHSDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAP 155 Query: 197 NFLATVAHIITYGKPPKLD 215 + + G+ P++D Sbjct: 156 RI-RALLEALLTGRKPEVD 173 >UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN Length = 433 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 56/198 (28%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 ++ + C GC S L +E +LE + L ++ Sbjct: 255 KKKLKLATCSLAGCFGCHMSFLDMDERLIE--LLERVELSRSP-------------LNDI 299 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + +++G++ +N + +R E IIA+GSC+ GGV + Sbjct: 300 KTCAPDCDLGLIEGAVCNTEN-----------IAVLRHFRESCKIIIAVGSCAINGGVPS 348 Query: 166 AGVN----------PTGAVS---------------LQEVLPGKTVINI----PGCPPNPH 196 N + L++V P VI + PGCPP Sbjct: 349 LRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPAD 408 Query: 197 NFLATVAHIITYGKPPKL 214 F + + + GK P+L Sbjct: 409 AFWK-ILNDLLDGKEPEL 425 >UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae RepID=B6YU80_THEON Length = 265 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 64/216 (29%), Gaps = 72/216 (33%) Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 + + + ++GS+ ++ V+ ++K E A ++A+G+C+ G Sbjct: 43 LDRDSSEDEPVDIAFIEGSVSTEEE-----------VELVKKIRENAKIVVAVGACATQG 91 Query: 162 GVAA-------------------AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 GV + P A L+ + I GCPP +F+ + Sbjct: 92 GVQSWEKDKSLEELWKAVYGDGKVKFEPKMAEPLENYIKVDYRIY--GCPPEKKDFIYAI 149 Query: 203 AHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC-LYHL 261 + P +D P C + + C L Sbjct: 150 GTFLVGSWPEDIDY---PV----------CL---------------ECRLKGNTCILIEK 181 Query: 262 G--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 G C GP T C + G C GC Sbjct: 182 GEPCLGPITRAGCDAR---------CPSYGIACIGC 208 >UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter RepID=B5EBV9_GEOBB Length = 251 Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 80/264 (30%), Gaps = 90/264 (34%) Query: 59 CTGCTESLLRATHPTVENLV--LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLV 116 C+GC +LL + + + +S A +E + Sbjct: 14 CSGCQLTLLNCED-ELAQVAARFDLVSFP-----MAES-----------VEGGAPFDAAI 56 Query: 117 VDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPT----- 171 V+G++ + + ++ + + ++A+G+C+ +GGVAA + Sbjct: 57 VEGAVSTPGD-----------LANLFRLRNSSRLLVALGTCAIFGGVAAMNNGVSTREEL 105 Query: 172 -------GAVSLQEVLPGKTVIN-------IPGCPPNPHNFLATVAHIITYGKPPKLDDK 217 G +++ P + N I GCPP +A + ++ G P L Sbjct: 106 VAAVYGDGEKTVESFAPA-PLTNFVSVDFSITGCPPEKQEVMALLCALLN-GTLPPLATY 163 Query: 218 NRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY---HLGCKGPETYGNCST 274 P C + RE CL C GP G C+ Sbjct: 164 --PV----------CT---------------ECRSRENLCLLLERKELCLGPIIQGGCNA 196 Query: 275 LQFCDVGGVWPVAIGHPCYGCNEE 298 A G C GC Sbjct: 197 R---------CPATGIVCEGCRGP 211 >UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria RepID=Q2J4E9_FRASC Length = 278 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 84/272 (30%), Gaps = 85/272 (31%) Query: 48 RPPV-IWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 RP + +W C GC +LL E+LS A V + Sbjct: 17 RPRLAVW-KFASCDGCQLTLLDCED----------------ELLSLAGEIDVSYFLEASS 59 Query: 107 EKYKGQYVL-VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 G Y L +V+GS+ + + V+ I + + ++ IG+C+ GG+ A Sbjct: 60 ATVDGPYDLSLVEGSVTTEQD-----------VERIHQVRAASRRLVTIGACATAGGIQA 108 Query: 166 -------------AGVNPTGAVSLQEVLPGKTVINI----PGCPPNPHNFLATVAHIITY 208 P +L P T + + GCP NP L ++ + Sbjct: 109 LRNFADVGDFLAAVYATPAYVSTLATSTPISTHVRVDFELQGCPINPRQLLEVISAFLA- 167 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGP 266 + RP + + C+RR + G C GP Sbjct: 168 --------RRRPNIS-SSAVCTECKRRG-----------------TVCVMVAHGTPCLGP 201 Query: 267 ETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 T+ C G A CYGC Sbjct: 202 VTHAGC---------GAICPAYHRGCYGCFGP 224 >UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4 Tax=Proteobacteria RepID=Q21RP8_RHOFD Length = 188 Score = 54.5 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 58/200 (29%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 P++ V + C GC S L ++ + + I H + + + Sbjct: 9 TPRKLKVATVSLAGCFGCHMSFL-----DIDERLFDLIE---H--------IEFDRSPLT 52 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 +++ + +++G + +N V +R+ ++A+G+C+ GG+ Sbjct: 53 DIKQVGACDIGLIEGGLCNAEN-----------VQVLREFRAHCKTLVAVGACAITGGLP 101 Query: 165 A-------------------------AGVN-PTGAVSLQEVLPGKTVI----NIPGCPPN 194 A A N P + L +V P + V+ ++PGCPP+ Sbjct: 102 AQRNHLDLGQLLTEVYRSRPGLSAGGAIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPS 161 Query: 195 PHNFLATVAHIITYGKPPKL 214 F ++ ++ G+ P L Sbjct: 162 ADAFWHFLSDLMA-GRTPHL 180 >UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFX1_THEYD Length = 318 Score = 54.5 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 96/301 (31%), Gaps = 86/301 (28%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLET---ISLEYHEVLSAAFGHQVEENKHN 104 +P + + A C GC +++ + ++++ + + + + V + K+ Sbjct: 3 KPKLAYYLAGGCGGCDIAVV-----DISEMLVDVALAVDIVF-------WAPTVADVKYK 50 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI-IAIGSCSAWGGV 163 LE GSI D G++ +HI K + IA G C+A GG+ Sbjct: 51 DLEAMPD-------GSI---DVGLFTGNVRNSEHEHIAKVLRNKCKVLIAFGICAACGGI 100 Query: 164 AA-------------------AGVNPTGAVS----------------LQEVLPGKTVIN- 187 + NP + L P V+ Sbjct: 101 KGLVNLHTTDELLDKAYVNTFSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKV 160 Query: 188 ---IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR-- 242 I GCPP+ + A +++ G+ P G+ + E C+R P Sbjct: 161 DYYIGGCPPHYEHVKAAFTALLS-GQLPPPGSW----ITMGKAVCEVCDRNPVLKGKPKK 215 Query: 243 ---FAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 K D E CL G C GP T G+C G A PC GC Sbjct: 216 LATEVKRTIDGAPSEDGCLLEEGYLCLGPVTQGDC---------GAKCPAANIPCRGCGG 266 Query: 298 E 298 Sbjct: 267 P 267 >UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST9_DESHY Length = 155 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 49/159 (30%) Query: 54 IGAQECTGC---TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 + C GC +LL + ++ L+ ++ H + G AL Y+ Sbjct: 38 LDCGSCNGCDWEMSALLNPIY-DLQRFGLDFVASPRHADILMCTGPMSTHLIQAALATYE 96 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA----AA 166 G IIA+G C+ GG+ AA Sbjct: 97 GT---------------------------------PNPKRIIAVGDCALDGGMFKEAYAA 123 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A+ + I IPGCPP+P L + + Sbjct: 124 HNGVGEALPVD--------IKIPGCPPSPDELLKVLLQL 154 >UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON Length = 273 Score = 53.8 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 54/188 (28%) Query: 43 VTNPQRPPVIW---IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 ++ + IW + C GC ++ P + VE Sbjct: 1 MSGKPKLRSIWVFHLNTGSCNGCDIEIIDVLTPF----------------------YDVE 38 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + + + L+V G PL Y + I+ I+AIG+C+ Sbjct: 39 RFGIKLVGSPRHAHALLVSG--PLTRQAYYG------AKETIKAMPPEPRVIVAIGTCTC 90 Query: 160 WGGVA----AAGVNPTGAV---------SLQEVLPGK--------TVINIPGCPPNPHNF 198 GG+ P + E++ VI IPGCPP P Sbjct: 91 SGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPVIYIPGCPPRPEEI 150 Query: 199 LATVAHII 206 + +A ++ Sbjct: 151 IYGIAQLV 158 >UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA Length = 135 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 33/152 (21%) Query: 55 GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV 114 A C GC L+ + P + +E + + V Sbjct: 14 HAGGCVGCDIELVASMGPR----------------------YDLERLGVRLVPSPRYADV 51 Query: 115 LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAV 174 L+V G +PL +P ++ + +IAIG+C GV N + A Sbjct: 52 LLVTGPVPLHT---------KPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAG 102 Query: 175 SLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 + +++P + IPGCPP P + + ++ Sbjct: 103 PVDKIIPVD--VKIPGCPPKPEAIMEGIIKVL 132 >UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R7_THEGJ Length = 229 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 40/159 (25%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ V+ + C GC S++RA + + L+ + Sbjct: 5 EKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDI------------------SYLRDGS 46 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 +Y V ++ G + + I++ +++ E A ++A GSC++ GG+ Sbjct: 47 CQYGEYDVALITGGACMNEPR---------ILEELKEIREKARVVVAFGSCASLGGILRF 97 Query: 164 --AAAGVNPTGAVSLQEVLPGKTVI----NIPGCPPNPH 196 P + P +VI +IPGCPP P Sbjct: 98 ARGGQEPRPDH----RNFQPINSVIPVDYSIPGCPPTPQ 132 >UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_CLOB8 Length = 169 Score = 52.6 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 19/120 (15%) Query: 91 SAAFGHQVEEN----KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 A G + + +++V G+I K PIV I Sbjct: 50 MMAAGGARYDIARFGYEVFRASPRQADLMIVAGTITEKMA---------PIVKKIYDQMP 100 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFLATVAHI 205 +IA+GSC+ GG N + V + IPGCPP P + + + Sbjct: 101 EPKWVIAMGSCATSGGPFVDSYNV-----VPGADTFLPVDVYIPGCPPRPEALIHGLLTL 155 >UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOB1_THEYD Length = 199 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 14/93 (15%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 V+++ G++ K P++ ++ +IA+GSC+ GG+ + Sbjct: 82 DVMIIAGTVTKKMA---------PVIVNLYHQMPEPRYVIAMGSCACSGGIF---NTYST 129 Query: 173 AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + E+LP + IPGCPP P + + + Sbjct: 130 VQGVDEILPVD--VYIPGCPPRPEALIEGLLKL 160 >UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota RepID=C5U7Y6_9EURY Length = 154 Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 45/177 (25%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 + + ++ + V+ + C GC + A V S + + Sbjct: 8 LMKKISRKKCIHVMLVYTGGCNGCDIEAVNA-------------------VFSPYYDAEQ 48 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA---AAIIAIG 155 + +L+V G + + + + +RK E A++AIG Sbjct: 49 YNVFLTF--NPRETDILIVSGCVT------------KFVKESLRKIYEKIPEPKAVVAIG 94 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPG-----KTV-INIPGCPPNPHNFLATVAHII 206 SC+ GGV N G + + + G V + +PGC P P + ++ + I Sbjct: 95 SCALTGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIISGIVKAI 148 >UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular organisms RepID=A9KS72_CLOPH Length = 144 Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 35/154 (22%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P +I C GC +L P + I+ Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIIN---------------------- 42 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 K +L++ GS+ ++ P+V I + ++A+G C+ GG+ A Sbjct: 43 TGNPKHADILLITGSVNEQN---------IPVVKQIYEQMAEPKIVVAVGICANSGGIFA 93 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 N +G + +VLP + +PGC P + Sbjct: 94 ECYNVSG--GVDKVLPVD--VYVPGCAARPEAII 123 >UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria RepID=Q3M430_ANAVT Length = 181 Score = 51.1 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 67/211 (31%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + +W+ C+GC S L ++ +++ AA V + E Sbjct: 5 KLATVWL--GGCSGCHMSFL-----DLDEWLIDL----------AAQADVVFSPFADIKE 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +G V++V+G+I ++ + +R+ + +I+ G C+ G V A Sbjct: 48 YPEGVDVVLVEGAIANEE--------HLTTIKIVRE---RSQILISFGDCAVTGNVTALR 96 Query: 168 VNPTGA---------------------------------VSLQEVLPGKTVINIPGCPPN 194 NP G+ + ++P I +PGCPP+ Sbjct: 97 -NPLGSAEPVLQRCYIQAVDINPQIPQEPGIVPPLLDRVTPVHSIVPVD--IYLPGCPPS 153 Query: 195 PHNFLATVAHIITYGKPPKLDDKNRPTFAYG 225 A + ++ GK P L R +G Sbjct: 154 ATRIRAALEPLLQ-GKTPHL--SGREFIKFG 181 >UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 Length = 274 Score = 50.7 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 35/172 (20%) Query: 35 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAF 94 A++ + V I C GC + A P + Sbjct: 16 LTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITP------------MWDP------ 57 Query: 95 GHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAI 154 E + + +L+ G + + Y ++ +AA ++A Sbjct: 58 ----ERFGFKLVANPRHADILICSGPVTRQM--YYPLLRAY-------EAAPDPKIVVAF 104 Query: 155 GSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 G+C + GG+ + G + +++P + IPGCPP+P + + + + Sbjct: 105 GACGSSGGIFHDAYSVWG--GIDKIIPVD--VYIPGCPPHPASVIYGLGMAL 152 >UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Proteobacteria RepID=Q21TB3_RHOFD Length = 254 Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 13/103 (12%) Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + + + LV+ G I + A +IA+G+C+ GGV Sbjct: 161 DIVASPRHADALVLSGPITRNMAQA---------LQICWDAIPEPKLVIAVGACAISGGV 211 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 A + A+ Q + K + +PGCP +P F++ + ++ Sbjct: 212 FAD----SDALDRQFLDNFKPALYVPGCPAHPLTFISGIMDLL 250 >UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota RepID=Y1363_METJA Length = 151 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 45/177 (25%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 M + + + V+ + C C ++ A + + L ++ Sbjct: 4 MIKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNP---------- 53 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA---AAIIAIG 155 + +LVV G + + + + +RK E A++A+G Sbjct: 54 -----------READILVVTGCVT------------KVVAESLRKIYEKIPEPKAVVAVG 90 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPG-----KTV-INIPGCPPNPHNFLATVAHII 206 +C+ GGV N G + + + G V + +PGC P P + +A + + Sbjct: 91 ACALMGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGIVKAL 144 >UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=A6UVJ5_META3 Length = 246 Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 +IA+G+C+ GG+ G + ++LP I PGCPP+P Sbjct: 192 KFVIAVGTCAISGGIFRENEEVVG--GVDKILPVDLYI--PGCPPHP 234 >UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS Length = 196 Score = 49.1 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 17/116 (14%) Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + + VL+V G + +A ++A+G C+ GG Sbjct: 79 FVASPRHADVLLVTGPVTTNMREALLKT---------WEATPDPKWVVALGQCAIDGGPF 129 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRP 220 A G +++V+P +I PGCPP P + LA + +I P +RP Sbjct: 130 ADSYAVVG--GVEKVVPVDLMI--PGCPPRPVDILAALVALIEAEARPP----SRP 177 >UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms RepID=NUOB_LEPBA Length = 186 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 15/122 (12%) Query: 84 LEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRK 143 +EY A + + + + +LV+ G+I K + + + Sbjct: 47 IEYMSTACADYDIARFGAERPSFSPRQADMILVL-GTITYKMAPV--------LRQIYDQ 97 Query: 144 AAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 AE +I++G+C++ GG+ + +LP + +PGCPP P L + Sbjct: 98 LAEP-KFVISVGACASSGGMFHTYG---VLQGVDRILPVD--VYVPGCPPRPEAILDALV 151 Query: 204 HI 205 + Sbjct: 152 KL 153 >UniRef50_P80510 Cytochrome c3 hydrogenase small chain (Fragment) n=52 Tax=Bacteria RepID=HC3S_THIFE Length = 40 Score = 47.6 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLE 85 V+W+ +G T S L A P+ +LV + I++ Sbjct: 2 NVLWLQGGAXSGNTMSFLNAEEPSAXDLVTDFGINVL 38 >UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO Length = 198 Score = 47.6 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 35/175 (20%) Query: 31 LSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVL 90 L + ESV R IW C ++ P + Sbjct: 7 LPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGM--------- 57 Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 + +++V G + K P+V + Sbjct: 58 ------------ERFSATPRQADLMIVAGRVSNKMA---------PVVRQVYDQMPNPKW 96 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +I++G C++ GG+ N + ++P I +PGCPP P L + + Sbjct: 97 VISMGVCASSGGMF---NNYAIVQGVDHIIPVD--IYLPGCPPRPEMLLNAIIEL 146 >UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular organisms RepID=NDHK2_CYAP4 Length = 259 Score = 47.6 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +IA+G+C GG+ +A +PT ++LP + IPGCPP P L V + Sbjct: 109 KYVIAMGACMITGGMFSAD-SPTALRGADKLLPID--VYIPGCPPRPEAILDAVTKL 162 >UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Proteobacteria RepID=B5EQ53_ACIF5 Length = 265 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 81/262 (30%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 C GC + L + + E + + + A G + + + Sbjct: 13 FSSCDGCQLAFLNLGEDLLR--LAELVEIVHF----AEAGPVDPDAVVD---------IA 57 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVS 175 V+GS+ ++ + I+K + + +I+IG+C+ GG+ A G Sbjct: 58 FVEGSVSTPED-----------EERIQKIRKNSRHLISIGACATAGGLQALRNLADGPGW 106 Query: 176 LQEVLPGKTVI-----------NIP------GCPPNPHNFLATVAHIITYGKPPKLDDKN 218 + E+ I ++P GCP N L + + P L+ Sbjct: 107 IAEIYAQPEHIHSLATSTPIAAHVPVDLELWGCPVNGRQVLGA-VRALLFEVVPALEK-- 163 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQ 276 + C+R H+ L G C GP T C Sbjct: 164 -------DKVCLECKR-----------------HQAVCVLVAKGLPCMGPVTLTGC---- 195 Query: 277 FCDVGGVWPVAIGHPCYGCNEE 298 G G CY C Sbjct: 196 -----GALCPRFGRDCYACYGP 212 >UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO Length = 174 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 18/126 (14%) Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 SAA + E + VL ++G++ K + + Sbjct: 60 SAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAEAAI---------WVYEQMPEPKF 110 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN--IPGCPPNPHNFLATVAHIITY 208 +I +G+C+ GG+ N V ++LP +N IPGCPP P + + Sbjct: 111 VIGMGACAIDGGIFWNSYN---IVRPMDILP----VNVFIPGCPPRPEAVAQAIIMLQRK 163 Query: 209 GKPPKL 214 + +L Sbjct: 164 IRKGEL 169 >UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota RepID=Y516_METJA Length = 148 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 36/165 (21%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 M + + + V + C GC ++ P + + Sbjct: 1 MMKELFRKRSIHVCVVNTGGCNGCDIEIVACLAPR----------------------YDI 38 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCS 158 E+ + VL+V G + L+ + + ++A+G+C+ Sbjct: 39 EQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKT---------PEPKIVVAVGACA 89 Query: 159 AWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 GG+ + G + +V+P IPGCPP P + T+ Sbjct: 90 LSGGIFK-EGHVVG--GVDKVIPVDA--KIPGCPPRPSEIIETIL 129 >UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED7_9FIRM Length = 254 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 84/273 (30%), Gaps = 84/273 (30%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P V C+GC L P + +L+ + + A Sbjct: 2 AELPKVAIFKFASCSGCQLEFLNLE-PVLLDLLGLVDLTHF---VMAR------------ 45 Query: 106 LEKYKGQY-VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 E G Y + V+GSI ++ ++ +++A ++AIG+C+ GG+ Sbjct: 46 RENKPGPYDIGFVEGSIVNPED-----------IERLKQARRDCGLLVAIGACACHGGLQ 94 Query: 165 A-------------AGVNPTGAVSLQEVLPGKTV---INIPGCPPNPHNFLATVAHIITY 208 + +P SL+ + V + GCP N + + V + Sbjct: 95 SLNNGTPQREVEARVYEHPAEVSSLKSYPVDEYVDIDAKLSGCPINKNELVEFVKSALL- 153 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY---HLGCKG 265 G P++ RP H C + E CL C G Sbjct: 154 GVTPRI----RP--------HCVCV---------------ECKLSENVCLTVSEKTPCMG 186 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 P T C G A C GC+ Sbjct: 187 PVTRAGC---------GALCPARSTACTGCHGP 210 >UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN9_HALUD Length = 183 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 35/163 (21%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKH 103 + P ++ + C GC L A P + VE Sbjct: 8 ARNRSPWILHMNCGSCNGCDIETLDALMPR----------------------YDVERFGI 45 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + + VLV G + + P ++ I + +IA GSC+A GGV Sbjct: 46 QQKDTPRHADVLVATGPVTKQMA---------PRLERIYEQMPEPKLVIAAGSCAATGGV 96 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 N + +V+P +PGCP +P + + ++ Sbjct: 97 FQDCYNCHE--GIDDVIPVDMY--VPGCPISPETLIDGIVALL 135 >UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales RepID=B2V8R1_SULSY Length = 173 Score = 47.2 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Query: 135 EPIVDHIRKA---AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN--IP 189 + + + KA IIA+G C+ GG G+ ++ + + K I+ I Sbjct: 96 RNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFK------GSYAVMDGIKDKLPIDIWIK 149 Query: 190 GCPPNPHNFLATVAHII 206 GCPP P + ++ + ++ Sbjct: 150 GCPPEPIDIISGLLILL 166 >UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1F3_METPS Length = 235 Score = 47.2 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 37/157 (23%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P ++ C+GC S L ++ +++ + +EY ++ Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERLLD--MMDMVDIEYMTLI-------------KDAT 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 ++ VDG+ + E V+ ++KA E A ++A G CS+ A Sbjct: 48 DIPKVDIVFVDGA---------ACLQSEDAVETLKKARENATYLVAWGGCSS----TATI 94 Query: 168 VNPTGAVSLQE-----VLPGKTVIN----IPGCPPNP 195 N + L + P K ++ +PG PP P Sbjct: 95 NNFSRGGQLPQPQHESFPPIKRLVKVDASVPGSPPGP 131 >UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_ACIBL Length = 213 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P++ H+ +I++G+C+ GGV N + + +P I +PGCPP P Sbjct: 127 PVIRHLYLQMPEPKWVISMGACATSGGVF---NNYALVQGVNQYIPVD--IYVPGCPPRP 181 Query: 196 HNFLATVAHI 205 + + + Sbjct: 182 EQLIYAITLL 191 >UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms RepID=C9RKY2_FIBSS Length = 419 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 14/98 (14%) Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + ++L G+I + P + + + G +IA+G+C+ GG Sbjct: 73 RQADLFILA--GTITRRMA---------PAIQMLWEQIPGPKYVIAMGACTISGGPF-IY 120 Query: 168 VNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N + Q ++P + +PGCPP P + + Sbjct: 121 DNYSVVRGAQNLIPVD--VFVPGCPPRPEALFHGLLTL 156 >UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_SORC5 Length = 194 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P + I + ++A G+C++ GG N T + +V+P + +PGCPP P Sbjct: 92 PALKRIYEQMADPKWVLAFGTCASCGGF---YDNYTTVAGIDKVIPCD--VYVPGCPPRP 146 Query: 196 HNFLATVAHI 205 L + + Sbjct: 147 EAVLDGLMLL 156 >UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=C5CEV5_KOSOT Length = 137 Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 7/91 (7%) Query: 119 GSIPLKDNGIYCMVAGEPIVDHIRKA---AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVS 175 GS+ D + + G + + + + A +IA+G+C G + T Sbjct: 48 GSVRHADVLLVTGMGGCKVSERVIRIYNQAPKPVFVIAVGTCPVAGATF--KESYTRCGP 105 Query: 176 LQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 L +P I PGCPP P +A ++ ++ Sbjct: 106 LDRFVPVDLYI--PGCPPKPETMIAGLSELL 134 >UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum RepID=A3ETD3_9BACT Length = 169 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 13/112 (11%) Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 + E + + + +L+V G + + +P++D +A Sbjct: 56 MNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQME--------QPLLD-THEAMASPKT 106 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 ++A+G C+ GGV + + P +PGCPP+P + L + Sbjct: 107 VLAVGDCACQGGVFRGSPAVRN--GVDGLFPEAR--KVPGCPPSPSDILRAL 154 >UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales RepID=C7PSH0_CHIPD Length = 187 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 16/110 (14%) Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 A+ + +L+V G+I K + + + AE Sbjct: 60 MASTYDMSRFGSERMAFTPRQCDLLMVMGTISKKMAPV--------LRQVYLQMAEP-RW 110 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFL 199 ++A+G+C++ GGV T +V LQ + V + +PGCPP P + Sbjct: 111 VVAVGACASSGGVFD-----TYSV-LQGIDQVIPVDVYVPGCPPRPEAII 154 >UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8Z3_GEMAT Length = 212 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 41/142 (28%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 VL+ G +PLK P++ I + +I++G+C++ GG+ N Sbjct: 83 DVLLCAGRVPLKLA---------PVLRRIYQQMPQPKWVISMGACASTGGMF---DNYAV 130 Query: 173 AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI------------------------ITY 208 + ++P + +PGCPP P + + + Y Sbjct: 131 VQGIDTIIPVD--VYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLY 188 Query: 209 GKPPKLDDKNRPTFAYGRLIHE 230 P ++D+ + P +G +H+ Sbjct: 189 IPPSRIDELSEP---FGNSVHQ 207 >UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria RepID=NUOB1_ROSS1 Length = 268 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 19/120 (15%) Query: 91 SAAFG----HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 A G + +++V G++ K P V + Sbjct: 47 MMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKKMA---------PQVVRLYNQMP 97 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFLATVAHI 205 +I++G+C+ GG G N L+ + V + IPGCPP P L + + Sbjct: 98 EPRYVISMGACATSGGPFRDGYNV-----LRGIDLLIPVDVYIPGCPPRPEALLHALMTL 152 >UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular organisms RepID=B2A054_OPITP Length = 338 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 38/157 (24%) Query: 53 WI---GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKY 109 WI A C GC L P + L I+ Sbjct: 9 WIIHYDASSCNGCDIETLACLTPLYDVERLGVIN----------------------TGNP 46 Query: 110 KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN 169 K + +V G++ + + ++ +I ++AIG C++ GG+ N Sbjct: 47 KHADIFLVTGAVNEQS---------KEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYN 97 Query: 170 PTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 G + V+P + +PGC P + V + Sbjct: 98 IAG--GVDRVIPVD--VYVPGCAARPEAIIDGVVQAL 130 >UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae RepID=B0R3U2_HALS3 Length = 235 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%) Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + V++V G+I K P + + ++ +G+CS GG Sbjct: 97 ASPRQADVMIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVNMGNCSTSGGPFQE 147 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 G N +EV+P I+IPGCPP P + VA + Sbjct: 148 GYNV--VKGAEEVIPVD--IHIPGCPPRPEALVYGVAKL 182 >UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales RepID=NUOB_AZOPC Length = 191 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%) Query: 90 LSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA 149 L AA + V+ G+I K P++ + Sbjct: 60 LGAARYDFARFGWEVTRNSPRQADVVFCCGTIVHKMA---------PVLKRLYDQMSEPK 110 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 +IA+GSC+ GG + + + + +++P + IPGCPP P + Sbjct: 111 YVIALGSCAISGGPFKSSYH--TIMGIDKIIPVD--VYIPGCPPRPDAMI 156 >UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW77_ACICJ Length = 164 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 26/119 (21%) Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA- 149 AA G + E+ A +L+V G VA + + +RK+ G A Sbjct: 53 MAAHGIAMVEDLRAA-------DILLVTG------------VATRNLAEAVRKSLAGMAP 93 Query: 150 --AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 ++A G C+ GGV G +Q V+P +I GCPP P LA + ++ Sbjct: 94 PRFVVAAGDCALDGGVFKGVPAVLG--GVQAVIPVDLLI--AGCPPAPRQILAGLVALV 148 >UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group RepID=C7IWD0_ORYSJ Length = 379 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P + + + +IA+G+C+ GG+ + + + + +++P + +PGCPP P Sbjct: 184 PSLVRLYEQMPEPKYVIAMGACTITGGMFSTD-SYSTVRGVDKLIPVD--VYLPGCPPKP 240 Query: 196 HNFLATVAHII 206 + + ++ Sbjct: 241 EAVIDALTKLL 251 >UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG1_9CLOT Length = 242 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 +IA+GSC+ GG+ G + L E+L VI PGCPP+P L Sbjct: 185 VIAVGSCAYSGGIFKDG--YSVCEDLNEILKVNLVI--PGCPPSPQAIL-----YGMLKI 235 Query: 211 PPKLDD 216 KLD+ Sbjct: 236 INKLDE 241 >UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_HELMI Length = 175 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P + + + IIA+GSC+ GG A + + +V+P + +PGCPP P Sbjct: 94 PAIQRVYEQMPEPKWIIAMGSCACTGGPFA--DSYAVVPGVDKVIPVD--VYVPGCPPRP 149 Query: 196 HNFL 199 L Sbjct: 150 EALL 153 >UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae RepID=NUOB_MYXXD Length = 187 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 14/93 (15%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 +L+V G+I LK PI+ + + ++A G C++ GG N Sbjct: 77 DLLMVVGTINLKQA---------PILKRVYEQMAEPKWVVAFGVCASSGGF---YDNYAV 124 Query: 173 AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + ++P + IPGCPP P L + + Sbjct: 125 LQGIDRIIPVD--VYIPGCPPRPEQVLDGLMLL 155 >UniRef50_P13062 Periplasmic [NiFe] hydrogenase small subunit (Fragment) n=18 Tax=Bacteria RepID=PHNS_DESMU Length = 32 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHP 72 +RP V+++ A +CTGC+E+LLR T P Sbjct: 3 TGRRPSVVYLHAAQCTGCSEALLRTTKP 30 >UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13 Tax=cellular organisms RepID=B6YU96_THEON Length = 175 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 41/174 (23%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P V + + C GC ++ A P + E Sbjct: 34 GRSPWVFHVNSGSCNGCDIEIIAALTPR----------------------YDAERFGVKL 71 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + VL+V G + + V + + +IA+GSC G V Sbjct: 72 VGSPRHADVLLVTGPVTDQSLER---------VKLVYEQTPDPKIVIAVGSCPTGGSVFY 122 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL-ATVAHI-----ITYGKPPK 213 T A L ++P + +PGCPP P L V + I G+ P+ Sbjct: 123 ESP-FTNA-PLSNIIPVD--VYVPGCPPRPEAILYGVVLALEKLAKILKGEVPE 172 >UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F29 Length = 156 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 26/118 (22%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 C GC +LL + +LE + Y E++ A + H L Sbjct: 15 FSSCDGCQLALLN-----LGEALLELPN--YLEIVHFAEAGPSDPTAHVDLA-------- 59 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 +V+GSI ++ ++ IR+ + + +I+IG+C+ GG+ A GA Sbjct: 60 LVEGSISTPED-----------IERIRQVRKNSDYLISIGACATAGGIQALRNLADGA 106 >UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei RepID=A2BJ94_HYPBU Length = 209 Score = 45.3 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 14/92 (15%) Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 VL+V+G++ K + + +IA+G+C+ GG+ N Sbjct: 85 VLLVEGTLTRKMARAAR---------LVWEQMPWPKFVIAMGACAITGGIFYNSYN---I 132 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 V + ++LP +PGCPP P + + Sbjct: 133 VRVNQILPVDYY--VPGCPPTPEAVANALIKL 162 >UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b) (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1 RepID=C0QR84_PERMH Length = 181 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 VL+V G++ K P++ I +IA+G CS+ GG PT Sbjct: 65 DVLIVAGTVVNKVA---------PMLKLIYDQMPDPKWVIAMGGCSSAGGPF-----PTY 110 Query: 173 AV--SLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A + ++P + +PGCPP P L + + Sbjct: 111 ATLQGVDRIIPVD--VYVPGCPPTPQALLWGILEL 143 >UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT Length = 178 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 56/195 (28%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 R +W+ C+GC S L +E A + E Sbjct: 6 RVATVWLDG--CSGCHMSFLDMDELLLEL---------------APRLELAYSPLVDRKE 48 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA-- 165 + +++G++ ++ R + ++A+G C+ G V A Sbjct: 49 FPDRVDLALLEGAVSTPEDEA-----------KARLVRAHSRLVVALGDCACQGNVPALR 97 Query: 166 --------------------AGVNPTGAVS--LQEVLPGKTVINI----PGCPPNPHNFL 199 A P V L LP VI + PGCPP P + Sbjct: 98 NRLDNEQLLDLVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIV 157 Query: 200 ATVAHIITYGKPPKL 214 + ++ +L Sbjct: 158 RALTAVLDGETLSEL 172 >UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota RepID=A0RY66_CENSY Length = 160 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 18/112 (16%) Query: 92 AAFGHQVEENKHNALEKY---KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA 148 AA G + + + +E + + ++VV G+I K P + + Sbjct: 44 AASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRKMA---------PRLRLVYDQMPEP 94 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFL 199 +IA+G+C+ GG+ N L + V + +PGCPP P + Sbjct: 95 KYVIAMGACAITGGLYFDSYNV-----LPGIDGVLPVDVYVPGCPPRPETLI 141 >UniRef50_P13064 Periplasmic [NiFeSe] hydrogenase small subunit (Fragment) n=2 Tax=Bacteria RepID=PHSS_DESNO Length = 32 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++ PVIW+ + CTGC+ SLL A P Sbjct: 3 QGAKKAPVIWVQGEGCTGCSVSLLNAVCP 31 >UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA Length = 238 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 20/123 (16%) Query: 88 EVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG 147 E + GH+V + E +L V+G++ D ++ + +AA Sbjct: 19 EEVCHEEGHEVVWSNLEGDEGEPDADILFVEGAVDFADAET---------LEKLEEAASA 69 Query: 148 AAAIIAIGSCSAWGG-----VAAAGV---NPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 + ++++GSC+A GG + + T + + IN GCPP Sbjct: 70 VSTVVSLGSCAATGGFERHVIGMRDPDRYHFT-VFPAAKFVETDYAIN--GCPPTTDVIA 126 Query: 200 ATV 202 + + Sbjct: 127 SFL 129 >UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae RepID=C6X0Z2_FLAB3 Length = 185 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 16/94 (17%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 +L+V G+I K P++ + ++A+G+C++ GG+ T Sbjct: 80 DMLMVCGTISKKLG---------PVLKQVYTQMAEPRWVVAVGACASSGGIFD-----TY 125 Query: 173 AVSLQEVLPGKTV-INIPGCPPNPHNFLATVAHI 205 +V LQ + V + +PGCPP P + V + Sbjct: 126 SV-LQGIDKIIPVDVYVPGCPPRPEQIIEGVMQV 158 >UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria RepID=UPI00016C3AA7 Length = 201 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 16/99 (16%) Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + V++V G + +K P++ I I++G+C++ GGV Sbjct: 62 SPRQCDVMIVAGRVAMKM---------VPVMQRIWLQMPEPKWCISMGACASSGGVFD-- 110 Query: 168 VNPTGAVSLQEVLPGKTV-INIPGCPPNPHNFLATVAHI 205 T AV +Q + V + +PGCPP P + V + Sbjct: 111 ---TYAV-VQGIDRFIPVDVYVPGCPPRPEQLIRAVLDL 145 >UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B297_SULD5 Length = 138 Score = 44.9 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 47/152 (30%), Gaps = 34/152 (22%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 I C GC +L + VL FG + Sbjct: 10 INTGSCNGCDVEILAS-------------------VLLPKFGFDALGCVYT--NDPTLAN 48 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 +L+V G+I + P + K ++A+G C GGV TG Sbjct: 49 ILLVTGAITARST---------PYLQAALKQLPSKKIVVALGICPISGGVFRDSYAITG- 98 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 L + +NI GCPP+P +A Sbjct: 99 -PLDTFVDVD--VNISGCPPSPKEIAQGLAQA 127 >UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W241_DESAS Length = 236 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 143 KAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 +A A ++A+G+C+ GGV + + LP + +PGCPP P + + Sbjct: 174 EACPRPALVVAVGACACGGGVFKEA--YASGGGVDKFLPVD--VYVPGCPPTPAQIIKGI 229 Query: 203 AHII 206 I Sbjct: 230 LTAI 233 >UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular organisms RepID=NDHK_THEEB Length = 237 Score = 44.5 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P + + + +IA+G+C+ GG+ ++ + + + +++P + +PGCPP P Sbjct: 96 PALVRLYEQMPSPKYVIAMGACTITGGMFSSD-SYSAVRGVDKLIPVD--VYLPGCPPRP 152 Query: 196 HNFLATVAHI 205 + + + Sbjct: 153 EAIMDAIVKL 162 >UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria RepID=B1ZSE5_OPITP Length = 279 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 ++A+G+C GG+ G N S+ VLP + IPGCPPNP L + + Sbjct: 222 VVAVGACGCSGGMF--GRNYATCGSVDSVLPVD--VYIPGCPPNPFALLHGILLAV 273 >UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU78_GLUOX Length = 161 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 37/150 (24%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + A C GC +E SL +E+ + Sbjct: 42 LEAGGCEGC---------------FMEIESLN-------GSAFALEQAGFVCVSDPADAD 79 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 L++ G++ +VD + +A ++IA+G+C+ GG P G Sbjct: 80 WLLLTGAVTRVCAE---------MVDRVWRAMPPGRSLIAVGACAVDGGPF-----PAGY 125 Query: 174 VSLQEVLPGKTV-INIPGCPPNPHNFLATV 202 +L + V +I GCPP+P + L + Sbjct: 126 ATLGGLEALTPVRRSIAGCPPSPDDILRAL 155 >UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY Length = 206 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 135 EPIVDHIRKAAEGA---AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGC 191 + +V +++ E ++A G C+ GG N + +VLP V I GC Sbjct: 109 KSMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNI--VKGIDQVLP-VDVYAI-GC 164 Query: 192 PPNPHNFLATVAHI 205 PP P N A + + Sbjct: 165 PPKPENLFAALMKL 178 >UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular organisms RepID=A1ASR2_PELPD Length = 179 Score = 44.1 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 46/155 (29%) Query: 52 IWI---GAQECTGCTESLLRATHP--TVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 +W+ + C GC +L P VE ++ + H + G + AL Sbjct: 14 LWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQG-PAMRSTGKAL 72 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 ++ A G + AIGSC+ GG+ Sbjct: 73 QRAYA--------------------------------AMPGPKLVFAIGSCACGGGIWH- 99 Query: 167 GVNPTGAVSLQEVLPGKTVIN--IPGCPPNPHNFL 199 + ++ + +N +PGCPP P + Sbjct: 100 -----DSYAVHGPVEKLIPVNYYVPGCPPRPEAII 129 >UniRef50_UPI000190EB16 hydrogenase-1 small chain n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 RepID=UPI000190EB16 Length = 61 Score = 44.1 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 1 MTGDNTL---IHSHGINRRDFMKLCAALAATMG 30 M + T + G+ RR F+K C+ A ++G Sbjct: 29 MNNEETFYQAMRRKGVTRRSFLKFCSLAATSLG 61 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 131 MVAGEPIVDH------IRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 ++AG P + + +IA+GSC+ GG + + +VLP Sbjct: 69 VIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGG---MYDVYSVMQGVNQVLPVD- 124 Query: 185 VINIPGCPPNPHNFLATVAHI 205 + IPGCPP P F+ + + Sbjct: 125 -VYIPGCPPRPEAFMQGLMTL 144 >UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A345_NITMS Length = 174 Score = 43.7 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 15/91 (16%) Query: 110 KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN 169 + ++VV G+I K P + + +IA+G+C+ GG+ N Sbjct: 79 RQCDLVVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYN 129 Query: 170 PTGAVSLQEVLPGKTV-INIPGCPPNPHNFL 199 L + V + +PGCPP P + Sbjct: 130 V-----LPGIDGVIPVDVYVPGCPPRPETLI 155 >UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2X8_UNCMA Length = 232 Score = 43.4 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 37/158 (23%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P ++ C+GC S L ++ +++ + ++Y +++ A Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERVLD--MMDMVDIDYMTLIADAT------------- 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +L VDG+ C+ + E + + ++KA E ++A G CS+ A Sbjct: 48 EIPKVDLLFVDGA--------ACLQSKESV-ESLKKARENTGFLVAWGGCSS----TATI 94 Query: 168 VNPT-GAVSLQEVLPGKTVIN--------IPGCPPNPH 196 N + G S Q I+ +PG PP P Sbjct: 95 NNFSRGGQSPQPQHESFPQISRLVKVDAFVPGSPPGPE 132 >UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria RepID=NUOB2_ACIBL Length = 202 Score = 43.4 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 16/94 (17%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 +++V G++ LK P+V I + ++A+G+C++ GG T Sbjct: 69 DLMIVAGTVTLKMA---------PVVQRIYEQMPEPKWVMAMGACASVGGPF-----NTY 114 Query: 173 AVSLQEVLPGKTV-INIPGCPPNPHNFLATVAHI 205 A LQ V V + + GCPP P N + + Sbjct: 115 AT-LQGVDKIVPVDVYVVGCPPRPENLFYGLLKL 147 >UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_HYDS0 Length = 177 Score = 43.4 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 15/119 (12%) Query: 88 EVLSAAFGHQVEENKHNA-LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 E++ AA + + VL+V G++ K P++ + Sbjct: 40 EMMHAAASRFDIDRLGMIFRASPRQADVLIVAGTVVNKVA---------PMLKLVWDQMP 90 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 I++G C++ GG + + ++P + IPGCPP P + + + Sbjct: 91 EPKWCISMGGCASAGGPF---PTYSTLQGIDRIIPVD--VYIPGCPPTPQGLIYGLLEL 144 >UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria RepID=NUOB_BLOPB Length = 236 Score = 43.4 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 16/101 (15%) Query: 129 YCMVAGEPIVDHI---RKAAEGA---AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 + ++AG P + + ++ + +I++G+C+ GG + + + LP Sbjct: 100 FMVIAGTPFLKMVPVIQRLYDQMLEPKWVISMGACANSGG---MYDIYSVVQGVDKFLPV 156 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFA 223 I PGCPP P ++ + + ++++ RP Sbjct: 157 DLYI--PGCPPRPEAYIQGLLLLKK-----SINEERRPLSW 190 >UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei RepID=A1RZ48_THEPD Length = 171 Score = 43.4 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 20/95 (21%) Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN---P 170 ++V++G++ K + +IA+G+C+ GG+ N P Sbjct: 82 LMVIEGTLTKKMGEAA---------KIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRP 132 Query: 171 TGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + ++ IPGCPP P + + Sbjct: 133 KDILPVEYF--------IPGCPPRPEAVAQAIIML 159 >UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales RepID=NUOB_BACV8 Length = 198 Score = 43.4 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 13/108 (12%) Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 AA A + +++V G+I K P++ + + Sbjct: 72 AARYDFARFGFEVARASPRQADMIMVAGTITHKMA---------PVLKRLYDQMADPKYV 122 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 IA+G C+ GG + + ++LP + IPGCPP P L Sbjct: 123 IAVGGCAISGGPFKKSYHVLN--GVDKILPVD--VYIPGCPPRPEALL 166 >UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales RepID=Q978D5_THEVO Length = 222 Score = 43.4 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 41/149 (27%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 I + C C L P + L + + Sbjct: 94 IDSGACGACNMEFLSIFSPQYDANRLGIF----------------------MVNTPRYAD 131 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 L+V G + + +D +A +IA+G+C+ GG+ G NP Sbjct: 132 ALIVMGVMTPGM---------KEALDRAYEAMPEPKLVIAMGACAVTGGI--MGENP--- 177 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATV 202 + K + I GCPP+P+ +A + Sbjct: 178 -----LDREKYNVEIAGCPPSPYTLIAAL 201 >UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VB41_9EURY Length = 236 Score = 43.4 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 13/99 (13%) Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + V++V G+I K P + + ++ +GSC+ GG Sbjct: 98 ASPRQADVIIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVGMGSCTVSGGPFQE 148 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 G N +EV+P I++PGCPP P + VA + Sbjct: 149 GYNV--IKGAEEVIPVD--IHVPGCPPRPEALIYGVAKL 183 >UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria RepID=NUOB2_STRGG Length = 235 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 34/177 (19%) Query: 29 MGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHE 88 +G+ S+ A E + V N R +W+ C + A+ + + L I Sbjct: 31 LGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPF---- 86 Query: 89 VLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA 148 + +++V G++ K P V + + Sbjct: 87 -----------------APGPRQADLMIVSGTVTDKMA---------PAVKRLYEQMPEP 120 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +I+ G+CS GG + T + +++P + +PGCPP P L + + Sbjct: 121 KYVISFGACSNCGGPYWDSYSVTK--GVDQIIPVD--VYVPGCPPRPEALLQGILKL 173 >UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW47_ACICJ Length = 264 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%) Query: 135 EPIVDHIRKAAEGAAA---IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGC 191 +++ +R+ E A ++A G+C+ GG+A G +G L+E LP +PGC Sbjct: 180 RAMLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGPCLSG---LEEALPVDLY--LPGC 234 Query: 192 PPNPHNFLATVAHII 206 PPNP + + + Sbjct: 235 PPNPAAIIEALLMFL 249 >UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria RepID=NUOB1_OPITP Length = 171 Score = 43.0 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +IA+G+C++ GG + + +LP + I GCPP P L + + Sbjct: 102 KWVIAMGACASSGG---MYRSYAHMQGVDRILPVD--VYISGCPPRPEGILDALMKL 153 >UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X3_IGNH4 Length = 207 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%) Query: 135 EPIVDHIRKAA---EGAAAIIAIGSCSAWGG--VAAAGVNPTGAVSLQEVLPGKT----- 184 + + +R+ G +I +G C+ GG + V + EV+ Sbjct: 81 RKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYV----LDGIHEVIESLPEEYRK 136 Query: 185 ---VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHE 230 V+N+ GCPP P L + + + D P Y +H+ Sbjct: 137 DVHVVNLAGCPPRPEGLLRAILKM--EELINEGDLARAPLTRY--RLHD 181 >UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria RepID=NUOB2_RHOS1 Length = 205 Score = 43.0 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 14/110 (12%) Query: 96 HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIG 155 Q + +L+V G++ K P+ + +I++G Sbjct: 61 DQARFGAEVIRSTPRQADLLIVSGTVFRKMA--------VPLYRLYSQM-REPRWVISMG 111 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +C+ GG + + LP + +PGCPP P + + + Sbjct: 112 ACANSGG---MYDIYSVVQGVDSFLPVD--VYVPGCPPRPEALMEALVLL 156 >UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes RepID=NUOB_DESRM Length = 196 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 16/116 (13%) Query: 88 EVLSAAFG---HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA 144 E L AA + V++V G++ K P V + + Sbjct: 73 EGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAA---------PFVVRLYEQ 123 Query: 145 AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLA 200 +IA+GSC+ GG + + + +++P + IPGC P P + Sbjct: 124 MAEPKYVIAMGSCAISGGPFV--DSYSVVPGVDKLIPVD--VYIPGCAPRPDAVIH 175 >UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria RepID=NUOB2_OPITP Length = 191 Score = 43.0 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 15/119 (12%) Query: 91 SAAFGHQVEEN----KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 A G + + V++V G++ K P V + Sbjct: 67 MMAAGMARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMA---------PAVKLLYDQML 117 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +IA+G C+ GG + ++ P + +PGCPP P + + + Sbjct: 118 EPKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVD--VYVPGCPPRPEALIEGILKL 174 >UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus RepID=D2PJN5_SULIS Length = 201 Score = 42.6 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 43/150 (28%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 I + C GC L + P + + S+ + + Sbjct: 90 IDSGTCGGCNMELKLISSPEYD---MTRFSIFFTNT-------------------PRHAD 127 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 LVV G + K + ++ +A +I +G+C+ GG+ Sbjct: 128 ALVVMGVMTEKM---------KEVLKKAYEAMPEPKVVILLGACAISGGI---------- 168 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 + E +P + V+ I GCPPNP L + Sbjct: 169 --IGEGVPLEAVVEISGCPPNPFTILEALM 196 >UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms RepID=NUOB_DEIGD Length = 178 Score = 42.6 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 PI+ + +I++G+C++ GG+ N ++ V+P + +PGCPP P Sbjct: 90 PIMRRVYDQMPDPKWVISMGACASSGGMF---NNYAVVQNVDHVVPVD--VFVPGCPPRP 144 Query: 196 HNFLATVAHIITYGKPPKLDDKN 218 + V + + D + Sbjct: 145 EALIYAVMQLQKKVRGEAYDARG 167 >UniRef50_UPI0001854780 quinone-reactive Ni/Fe hydrogenase HydA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI0001854780 Length = 68 Score = 42.2 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 16/30 (53%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAA 37 GI+RRD +K ++AT+ L + A Sbjct: 38 FEGAGISRRDLLKWAGMMSATLALPASFAP 67 >UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IG01_9CLOT Length = 266 Score = 42.2 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 ++A G+C+ GG+ + G + +LP + IPGCPP P + + Sbjct: 210 KLVVAAGACACSGGLF--KDSYAGRNGIDTILPVD--VYIPGCPPRPQALIYGIL 260 >UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZJ00_GLUDA Length = 166 Score = 41.8 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P+++ A A++A+G+C+ GG G + + L + +PGCPP+P Sbjct: 81 PVLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLD----MTVPGCPPSP 136 Query: 196 HNFLATVAHII 206 LA +A ++ Sbjct: 137 AAILAGLARVL 147 >UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1E3_DESDA Length = 185 Score = 41.8 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 35/165 (21%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + + P ++ C GC +L P + ++ Sbjct: 9 KRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVN------------------ 50 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 K VL+V G++ ++ ++ I + A+I++G+C+ G Sbjct: 51 ----AGNPKHADVLLVTGTVNHRN---------RHVLKQIYEQMPSPKAVISLGACNLSG 97 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 GV N V+P + +PGCPP P + V + Sbjct: 98 GVFKDTYNVLN--GAHNVIPVD--VFVPGCPPKPEAIIDGVVEAL 138 >UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria RepID=NUOB_RUBXD Length = 251 Score = 41.1 bits (95), Expect = 0.064, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 13/93 (13%) Query: 113 YVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG 172 V++V G++ K + + +IA+G+C+ GG G + Sbjct: 69 DVMIVSGTVSTKMAERMTR---------LYEQMPEPKWVIAMGACAISGGPFLDG--YSV 117 Query: 173 AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + V+P + +PGCPP P + + + Sbjct: 118 LMGADRVIPVD--VYVPGCPPRPEALIFGIMTL 148 >UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15 Tax=Proteobacteria RepID=Q12F15_POLSJ Length = 181 Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%) Query: 137 IVDHIRK---AAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPP 193 + + +R+ A ++A+G C GG+ G + + V+P + +PGCPP Sbjct: 98 MDEALRRTYDATPEPKLVVAVGDCGCTGGIF--GDSYASCGRVANVIPVD--VTVPGCPP 153 Query: 194 NPHNFLATVAHIITYGKP 211 P L + + +P Sbjct: 154 PPIEILRGILTAVRQRRP 171 >UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39SF9_GEOMG Length = 244 Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Query: 143 KAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 +A ++A G+C+ GG + ++P I PGCPP+P L + Sbjct: 180 EAIPDPKIVVACGACAINGGPYIDTPQV--CNGVDSIVPVDLYI--PGCPPHPATILDGL 235 Query: 203 AHII 206 I+ Sbjct: 236 LRIL 239 >UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_SALRD Length = 213 Score = 40.7 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 IA+G+C++ GG+ + LP + I GCPP P + L + I Sbjct: 96 KWCIAMGACASTGGMHRCYG---VVQGVDNFLPVD--VYISGCPPRPESVLHALMDI 147 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter... 449 e-125 UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (... 413 e-114 UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta... 410 e-113 UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba... 398 e-109 UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte... 388 e-106 UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri... 386 e-106 UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica... 386 e-106 UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba... 385 e-105 UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella... 384 e-105 UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n... 383 e-105 UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr... 382 e-104 UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost... 381 e-104 UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr... 379 e-104 UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n... 379 e-103 UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve... 378 e-103 UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr... 377 e-103 UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B... 374 e-102 UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2... 363 5e-99 UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH 362 1e-98 UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6... 359 7e-98 UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 356 7e-97 UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy... 354 4e-96 UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co... 350 6e-95 UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De... 345 2e-93 UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba... 343 7e-93 UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax... 340 5e-92 UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n... 338 3e-91 UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni... 337 3e-91 UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax... 335 1e-90 UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc... 335 2e-90 UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit... 335 2e-90 UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba... 332 1e-89 UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob... 329 1e-88 UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto... 326 1e-87 UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic... 325 1e-87 UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil... 321 3e-86 UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n... 321 3e-86 UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th... 320 4e-86 UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma... 311 2e-83 UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar... 310 4e-83 UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe... 303 9e-81 UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha... 292 1e-77 UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl... 288 1e-76 UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl... 285 2e-75 UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re... 285 2e-75 UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re... 285 2e-75 UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost... 284 4e-75 UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac... 280 5e-74 UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr... 276 8e-73 UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 276 8e-73 UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub... 275 2e-72 UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t... 274 3e-72 UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 269 1e-70 UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)... 267 4e-70 UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 267 4e-70 UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De... 266 8e-70 UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s... 263 6e-69 UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 260 5e-68 UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th... 259 1e-67 UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl... 255 2e-66 UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re... 248 2e-64 UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr... 247 5e-64 UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 237 4e-61 UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep... 237 6e-61 UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo... 236 7e-61 UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi... 236 1e-60 UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 234 4e-60 UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi... 230 5e-59 UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_... 228 2e-58 UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo... 226 9e-58 UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 226 1e-57 UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13... 165 2e-39 UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub... 158 3e-37 UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 152 1e-35 UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni... 152 2e-35 UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni... 151 3e-35 UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax... 151 4e-35 UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 151 5e-35 UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 147 5e-34 UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 147 8e-34 UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ... 145 3e-33 UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 141 4e-32 UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=... 140 9e-32 UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 139 2e-31 UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 137 9e-31 UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu... 134 7e-30 UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 132 2e-29 UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=... 130 1e-28 UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 130 1e-28 UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T... 129 2e-28 UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo... 128 3e-28 UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag... 128 4e-28 UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam... 128 4e-28 UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T... 126 1e-27 UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta... 126 2e-27 UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta... 125 3e-27 UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ... 123 1e-26 UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v... 122 2e-26 UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 121 3e-26 UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 121 5e-26 UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 120 1e-25 UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 119 1e-25 UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni... 118 4e-25 UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco... 117 7e-25 UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 116 1e-24 UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 116 1e-24 UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c... 114 4e-24 UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 111 3e-23 UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax... 110 5e-23 UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 110 1e-22 UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 110 1e-22 UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 109 2e-22 UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 107 5e-22 UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria... 107 5e-22 UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R... 106 1e-21 UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 106 1e-21 UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=... 105 2e-21 UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l... 105 3e-21 UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=... 104 5e-21 UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s... 104 6e-21 UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI 102 2e-20 UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 102 2e-20 UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch... 102 2e-20 UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F... 101 4e-20 UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ... 101 5e-20 UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=... 101 5e-20 UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 100 1e-19 UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ... 98 4e-19 UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ... 98 4e-19 UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 98 5e-19 UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n... 98 7e-19 UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S... 96 2e-18 UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 96 3e-18 UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm... 95 3e-18 UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni... 95 4e-18 UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l... 95 4e-18 UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 95 4e-18 UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 95 5e-18 UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch... 93 1e-17 UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID... 93 2e-17 UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 93 2e-17 UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c... 92 4e-17 UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n... 91 6e-17 UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax... 91 8e-17 UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=... 90 1e-16 UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit... 89 4e-16 UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ... 87 7e-16 UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax... 86 3e-15 UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 86 3e-15 UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 85 3e-15 UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=... 85 5e-15 UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep... 84 8e-15 UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c... 84 9e-15 UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri... 83 2e-14 UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 82 4e-14 UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragm... 77 7e-13 UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 74 8e-12 Sequences not found previously or not previously below threshold: UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 140 9e-32 UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v... 134 4e-30 UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 121 6e-26 UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 105 3e-21 UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa... 103 1e-20 UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma... 100 7e-20 UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 97 8e-19 UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac... 97 1e-18 UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 96 2e-18 UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta... 95 4e-18 UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=... 94 7e-18 UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob... 94 9e-18 UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B... 93 1e-17 UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=... 92 3e-17 UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv... 92 3e-17 UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c... 92 3e-17 UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 92 4e-17 UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=... 92 4e-17 UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax... 92 4e-17 UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B... 91 9e-17 UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins... 90 1e-16 UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins... 90 1e-16 UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=... 89 2e-16 UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba... 89 3e-16 UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 89 3e-16 UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 89 3e-16 UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F... 89 3e-16 UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N... 89 4e-16 UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax... 88 5e-16 UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 87 6e-16 UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=... 87 8e-16 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 87 1e-15 UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni... 87 1e-15 UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy... 87 1e-15 UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta... 86 2e-15 UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De... 86 2e-15 UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=... 86 2e-15 UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P... 86 2e-15 UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 86 3e-15 UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter... 86 3e-15 UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 85 3e-15 UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr... 85 4e-15 UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F... 85 4e-15 UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T... 84 5e-15 UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P... 84 7e-15 UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li... 84 7e-15 UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 84 9e-15 UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 84 1e-14 UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=... 83 2e-14 UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=... 83 2e-14 UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 82 3e-14 UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 82 3e-14 UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=... 82 3e-14 UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 82 3e-14 UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F... 81 7e-14 UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T... 80 1e-13 UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 80 1e-13 UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 80 2e-13 UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=... 79 2e-13 UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ... 79 3e-13 UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 79 3e-13 UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr... 79 3e-13 UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri... 79 3e-13 UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce... 79 4e-13 UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C... 78 4e-13 UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c... 78 4e-13 UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl... 78 5e-13 UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr... 78 6e-13 UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T... 77 7e-13 UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni... 77 7e-13 UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T... 77 9e-13 UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R... 77 9e-13 UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p... 77 1e-12 UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 76 2e-12 UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 75 4e-12 UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 75 4e-12 UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=... 75 5e-12 UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 74 7e-12 UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=... 74 7e-12 UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba... 74 1e-11 UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T... 72 3e-11 UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 72 3e-11 UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 72 3e-11 UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 72 3e-11 UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=... 71 5e-11 UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 71 5e-11 UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta... 71 7e-11 UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I... 69 2e-10 UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 69 3e-10 UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono... 69 3e-10 UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx... 69 3e-10 UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n... 68 4e-10 UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=... 68 5e-10 >UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57 Length = 372 Score = 449 bits (1155), Expect = e-125, Method: Composition-based stats. Identities = 372/372 (100%), Positives = 372/372 (100%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT Sbjct: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS Sbjct: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL Sbjct: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA Sbjct: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI Sbjct: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR Sbjct: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGR 360 Query: 361 QQKKDNADSRGE 372 QQKKDNADSRGE Sbjct: 361 QQKKDNADSRGE 372 >UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound hydrogenase small subunit) (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria RepID=C1DUF2_SULAA Length = 416 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 139/371 (37%), Positives = 208/371 (56%), Gaps = 10/371 (2%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 + + I+RRDF K + + AT+ L +A++ R PVIWI Q+C G Sbjct: 55 KFDEYLSMWDISRRDFFKWVSMMTATLMLPPSFEPLVAQAAEVMNRVPVIWINIQDCDGN 114 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 TE+L+R++ PTV+ L+L+ +S+EY E L AA G Q E+ +A++ +KGQY+L V+GSIP Sbjct: 115 TEALIRSSAPTVDELILDYLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIP 174 Query: 123 LKDNGIYCMVAG-EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 +K + E V +R+ A+ A A+IA+G+C+++GGV AA NPTGAV + +V+ Sbjct: 175 VKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVS 234 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 G V+NIP CP NP N + + H + G P+LD RP FA+G IH++CERR HFDAG Sbjct: 235 GVPVVNIPACPANPVNIVGVIMHYVLTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAG 294 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 F +E+GDEG + +CLY +GCKGP T+ NCS +++ D G WP+ +G C GC+E Sbjct: 295 EFVEEWGDEGAKNNFCLYKMGCKGPFTFNNCSIVRYND-GTNWPIGVGRGCIGCSEPDFW 353 Query: 302 FHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQ 361 + + P + E G L + G+ AV Sbjct: 354 DKYATER----PVAASDIRPPAIGGVESTVDKVGLTILTATAI----GIGAHAVMSALAG 405 Query: 362 QKKDNADSRGE 372 +K+ ++ E Sbjct: 406 KKETITSNKEE 416 >UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria RepID=B0TDW1_HELMI Length = 395 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 151/369 (40%), Positives = 221/369 (59%), Gaps = 5/369 (1%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 + + G++RRDF+K C +AA++GL AA +AE++ +R PVIW QECT CT Sbjct: 31 FYQYLRNRGVSRRDFIKFCTVMAASLGLEPGAAGAIAEALETKRRMPVIWRNFQECTCCT 90 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ES +R HP ++++ ISL+YHE L A GHQ EE A+E +G Y+L V+G+IP+ Sbjct: 91 ESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAVEGAIPV 150 Query: 124 KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 KD GIYC +AG VD +++ A+ A AIIA GSC+ G V AA NPTGAV +Q+++ K Sbjct: 151 KDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDK 210 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +IN+PGCP + H++T+ + P+LD + RP YG IH+ C RR +FDAG F Sbjct: 211 PIINVPGCPAIAEVMAGVITHVLTFERLPELDSQGRPKAFYGHRIHDKCNRRAYFDAGMF 270 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 + F D+G +EGWCLY LGCKGP TY +CS L++ G +P+ GHPC GC+E G + Sbjct: 271 VENFDDQGAKEGWCLYKLGCKGPNTYNSCSNLEWN-GGLSYPIKSGHPCIGCSEFGFWDN 329 Query: 304 KGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQK 363 G + ++ P + A A+G + AG+S + +++ RQ+ Sbjct: 330 TGGTSMYAHLSEVPGLKIG----VNVDAFGAAAVGAAIAGAAVHAGLSAVTKKQMDRQEN 385 Query: 364 KDNADSRGE 372 + N ++ E Sbjct: 386 EKNCKNKVE 394 >UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria RepID=C3XGH6_9HELI Length = 425 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 142/352 (40%), Positives = 203/352 (57%), Gaps = 8/352 (2%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 N ++ GI RRDFMK A + A++GL + A A + R P+IW+ ECTG Sbjct: 73 KDLNEVLQEKGIQRRDFMKWAAVVTASIGLPATFAPLTARAAELADRVPIIWLHMAECTG 132 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ESLLR+ P +++++ + +S+EYHE + AA G+Q E++ +A++KY G+YV++V+G I Sbjct: 133 CSESLLRSEDPCIDSIIFDYVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGI 192 Query: 122 PLKDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV 179 P KD + + G + R A+ AAAI AIG+CS++GGV AA NPT A L ++ Sbjct: 193 P-KDTEYFLTIGASGRTGAEECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDI 251 Query: 180 LPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD 239 + K VIN+PGCPPN N + T+ I +G LD +RP +AYG IH+ CERR FD Sbjct: 252 I-DKKVINVPGCPPNEKNIVGTLMQHILFGDM-ALDAFHRPKWAYGHRIHDLCERRGRFD 309 Query: 240 AGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 AG F + FGDE + G+CLY +GCKGP T+ NCS L+F WP+ GH C GC+E Sbjct: 310 AGEFVQHFGDENAKNGYCLYKVGCKGPYTFNNCSKLRFN-SHTNWPIGAGHGCIGCSEPH 368 Query: 300 IGFHKGIHQLA--NVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAG 349 ++ N R D A G V GA + +++G Sbjct: 369 FWDTMSPFEVPLGNRYQTAFRGAGADHTADRVGMVILGATAIGIAAHAMLSG 420 >UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria RepID=MBHS_OLICO Length = 360 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 130/306 (42%), Positives = 193/306 (63%), Gaps = 1/306 (0%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 ++ G+ RR F+K C+ A +GL +E+A ++ R PV+W+ ECT Sbjct: 5 ETFYEVMRRQGVTRRSFLKFCSLTATALGLGPAYTSEIAHAMETKPRTPVLWLHGLECTC 64 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ES +R+ HP V+++VL ISL+Y + L AA GHQ E + +E+YKG Y+L V+G+ Sbjct: 65 CSESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAVEGNP 124 Query: 122 PLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 PL ++G++C++ G+P VD +R AA+ A AII+ GSC++ G V AA NPT A + +V+ Sbjct: 125 PLNEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVIT 184 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 K +I +PGCPP + +++T+GK P+LD RP Y + IH+ C RRPHFDAG Sbjct: 185 DKPIIKVPGCPPIAEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAG 244 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 +F + F DEG R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+EEG Sbjct: 245 QFVESFDDEGARRGYCLYKVGCKGPTTYNACSTIRWNE-GTSFPIQAGHGCIGCSEEGFW 303 Query: 302 FHKGIH 307 + Sbjct: 304 DKGSWY 309 >UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA Length = 363 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 133/315 (42%), Positives = 191/315 (60%), Gaps = 1/315 (0%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 ++I GI RR F K C+ A ++GL AA+ +A ++ R PVIW+ ECT Sbjct: 6 ETFYSVIRRQGITRRSFHKFCSLTATSLGLGPLAASRIANALETKPRVPVIWMHGLECTC 65 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ES +R+ HP V++ VL ISL+Y + + AA GHQ E K+KGQY+L V+G+ Sbjct: 66 CSESFIRSAHPLVKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNP 125 Query: 122 PLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 PL + G++C+ G+P V+ ++ AE A AIIA G+C++WG V AA NPT A + +V+ Sbjct: 126 PLNEGGMFCIDGGKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVIT 185 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 K +I +PGCPP V I T+GK P+LD + RP Y + IH+ C RRPHFDAG Sbjct: 186 NKPIIKVPGCPPIAEVMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAG 245 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 +F +E+ DE R+G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+E+G Sbjct: 246 QFVEEWDDEAARKGYCLYKMGCKGPTTYNACSTVRW-NGGVSFPIQSGHGCIGCSEDGFW 304 Query: 302 FHKGIHQLANVENQT 316 + Q Sbjct: 305 DKGSFYDRLTNIKQF 319 >UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae RepID=A7BI79_HYDTH Length = 345 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 201/344 (58%), Gaps = 6/344 (1%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + G RRDF+K L+A +G + + +++ +P VIW+ Q+C Sbjct: 1 MESLYHIYRRRGYTRRDFLKSVLLLSAVLGFPPTSFGQAVKALELKPKPVVIWLEFQDCA 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GCTES +R+T +++L+ ISLEYHE L + G EE K A+EKYKG+Y+L+V+GS Sbjct: 61 GCTESFIRSTSILPSDVLLDYISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGS 120 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 + ++ G+YC V+G+ V+ +++AA+ A +IA+GSC++WGG+ A NPTGAV + ++L Sbjct: 121 VSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQIL 180 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 + V+NIPGCPP +A +A + GKPP+LD RP YG+ IH+ C RRP ++A Sbjct: 181 GDRQVVNIPGCPPISDVMVAVIAGFVITGKPPELDSMGRPKTFYGQTIHDRCYRRPFYNA 240 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 G+ A F DE R+G+CLY LGCKGP T C+T+++ G +P+ GHPC+GC+E Sbjct: 241 GKLAGSFDDESARKGYCLYKLGCKGPITRNACATIRWN-GGLSFPIQSGHPCFGCSEPNF 299 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVV 344 I+ +V G + A+G + Sbjct: 300 WDRGFIYSPLSVVEGGFG-----WKGILAGVATGVALGAASAAI 338 >UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCC1_9PROT Length = 369 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 134/338 (39%), Positives = 191/338 (56%), Gaps = 5/338 (1%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 ++ GI+RRDF+K + A +GL +A+S+ + PVIW+ Q+C G Sbjct: 19 KNIEKILEVEGISRRDFLKWVSVTTAMLGLPGFFEPLVAQSINALNKIPVIWMNYQDCAG 78 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 +ES+LRA+ PT++ +++ ISLE+HE+L A G Q E ++ Y+G+Y+L V+GSI Sbjct: 79 NSESILRASKPTIDEIIINLISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFVEGSI 138 Query: 122 PLKDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV 179 PL DNG+Y + GE DH+ + A A AIIA+G+C+++GGV AA NPTGA + V Sbjct: 139 PLADNGVYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGV 198 Query: 180 LPG-KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHF 238 +IN+P CP NP + + G+ P+LD RP FAY IH+ CERR HF Sbjct: 199 DGINVPIINLPACPVNPETMIGVLIMYALTGELPELDSLKRPLFAYASRIHDRCERRVHF 258 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 DAG F + FGD + G+CLY +GCKGP T+ NC T++F D WPV GH C GC+E Sbjct: 259 DAGEFVESFGDNASQSGYCLYKVGCKGPFTFNNCPTVKFND--TSWPVDAGHGCIGCSEP 316 Query: 299 GIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGA 336 G G + VE + + + A Sbjct: 317 GFVDKFGSFEKPFVEENINPAAESIKDIPFVATTILAA 354 >UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEI9_EDWTE Length = 471 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 137/364 (37%), Positives = 211/364 (57%), Gaps = 14/364 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 + G+ RR F+K C+ A ++GL + A ++A ++ N R PV+WI ECT C Sbjct: 104 TFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAWALENKPRIPVVWIHGLECTCC 163 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 TES +R++HP ++++L ISL+Y + L AA G Q E + + +Y G+Y+L V+G+ P Sbjct: 164 TESFIRSSHPLAKDVILSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAVEGNPP 223 Query: 123 LKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 L + G++C+ +G P ++ ++KAA GA+AIIA G+C++WG V AA NPT A + +V+ Sbjct: 224 LGEQGMFCISSGRPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITD 283 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 K +I +PGCPP P A + +++T+ + P +D RP YG+ IH+ C RR HFDAG Sbjct: 284 KPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGE 343 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 F + + D+ R+G+CLY +GCKGP TY CS+ ++ D G +P+ GH C GC+E G Sbjct: 344 FVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWND-GVSFPIQSGHGCLGCSENGFWD 402 Query: 303 HKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQ 362 + + G + +A +GL V AGV V AV Q+ Sbjct: 403 RGSFYSRVVD------------IPQMGTHSTADTVGLTALGVV-AAGVGVHAVASAVNQR 449 Query: 363 KKDN 366 K+ N Sbjct: 450 KRHN 453 >UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria RepID=MBHS_WOLSU Length = 354 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 156/362 (43%), Positives = 207/362 (57%), Gaps = 10/362 (2%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ GI RRDFMK A+ A + L + A++ R PVIW+ ECTGC+ESL Sbjct: 1 MLEEKGIERRDFMKWAGAMTAMLSLPATFTPLTAKAAELADRLPVIWLHMAECTGCSESL 60 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 LR P +++L+ + ISLEYHE + AA G Q E N +A+EKYKG+YVL+V+G IP + Sbjct: 61 LRTDGPGIDSLIFDYISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSS 120 Query: 127 GIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 Y V G +H R A+ AAAI AIGSCS++GGV AA NPT A L +V K Sbjct: 121 EFYLTVGPHGTTGAEHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKVT-NKP 179 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 VIN+PGCPP+ N + V H I +G P +D NRP +AYG IH+ CERR FDAG F Sbjct: 180 VINVPGCPPSEKNIVGNVLHFILFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFV 239 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 +EFGDEG ++G+CLY +GCKGP T+ NCS L+F WPV GH C GC+E Sbjct: 240 QEFGDEGAKKGYCLYKVGCKGPYTFNNCSKLRFNQ-HTSWPVQAGHGCIGCSEPDFWDTM 298 Query: 305 GIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKK 364 G + G + +A IG+ + GV+ AV + + K+ Sbjct: 299 GPFE-----EPVANRLYATAFDGLGADKTADKIGIT-LLAATAVGVAAHAVLSMMVKDKE 352 Query: 365 DN 366 +N Sbjct: 353 NN 354 >UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria RepID=A5GFC8_GEOUR Length = 378 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 172/373 (46%), Positives = 240/373 (64%), Gaps = 3/373 (0%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + + + G++RR FMK C A MGL ++AE++ P VIW+ QECT Sbjct: 6 MKKEEDFLCA-GVSRRSFMKTCITATAMMGLPFSMHTKVAEAMEKNGNPSVIWLHFQECT 64 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GC+ESLLR+THPT+ L+L+ ISL+YHE L A G Q E++ H+++ KG+Y+LVV+G+ Sbjct: 65 GCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVVEGA 124 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 IP K++GIYC V G+ ++ ++ AA AAAII+IG+C+++GG+ + G NPTGAV +++++ Sbjct: 125 IPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVRDIV 184 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 K +INIPGCPP+P+N L+TV + +T+ K P+LD RP FAYGR IHEHCERRPHFDA Sbjct: 185 KDKPIINIPGCPPSPYNLLSTVMYYLTFKKIPELDALGRPKFAYGRKIHEHCERRPHFDA 244 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 GRFAK +GD+ H +G+CL+ LGCKGP TY NCS +F +VG WPV++GHPC GC E + Sbjct: 245 GRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVGV-WPVSVGHPCIGCTEPDV 303 Query: 301 GFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA-GAIGLLGGVVGLVAGVSVMAVRELG 359 F I + TP V+ KE G G +G G G M ++L Sbjct: 304 LFKMAIADKVQIHEPTPFDSYAPVDLKEKGKGPEPLTTGFVGLAAGAALGAGAMLAKKLP 363 Query: 360 RQQKKDNADSRGE 372 + D E Sbjct: 364 KDDGHKEDDHHEE 376 >UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia RepID=Q3ABV6_CARHZ Length = 354 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 138/344 (40%), Positives = 201/344 (58%), Gaps = 15/344 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR--PPVIWIGAQECTGCTESLLRAT 70 I+RR+F+K + AAT+GLS E+A ++ N + PPVIWI CTGC+ SLL + Sbjct: 4 ISRREFLKFASFTAATLGLSQSV-PEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSV 62 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 HP ++ ++LE I+L++H +SAA GH E EK KG++ LVV+G++P KDNG+YC Sbjct: 63 HPDIKEILLEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYC 122 Query: 131 MVAGEP-----IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 + + + +++ E A A+IAIG+C+A+GG+ AA NPTG V + EV+ K V Sbjct: 123 SIGEKDGRELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKV 182 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 +NIPGCPP+P F+ ++AH++ Y + PK D RP Y +IH++C RR +FD FAK Sbjct: 183 LNIPGCPPHPDWFVGSLAHVLLYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAK 242 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 +F + G CL LGCKGP T+ +C T + + G W + GHPC GC E G G Sbjct: 243 DFSEPG-----CLLLLGCKGPVTHSDCPTRLW-NGGVNWCIKAGHPCIGCTEPGFPDKTG 296 Query: 306 IHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAG 349 E + P + +A AIGL ++G +A Sbjct: 297 PIYEKMPEIKLPGIS-ASADTFGEVVGAATAIGLGAHLIGNIAT 339 >UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria RepID=C6NZV2_9PROT Length = 371 Score = 379 bits (973), Expect = e-104, Method: Composition-based stats. Identities = 139/356 (39%), Positives = 209/356 (58%), Gaps = 2/356 (0%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + GI+RR+F++ C +LAA + L A+ MAE+++ +R VIW+ QECTGCTES+ Sbjct: 18 LAQRGISRREFLQFCTSLAALLALPPSMASVMAEAISKARRQSVIWLSFQECTGCTESIT 77 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 R+ PT+E+L+ E ISL+YH L AA G E + A++ +G+Y+++VDGSIP+ + G Sbjct: 78 RSHSPTLESLIFEMISLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIPMGNPG 137 Query: 128 IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVIN 187 Y +AG D + + A+GAAAI+A+G+C+ +GG+ A NPTGAV + +++ K +IN Sbjct: 138 -YSAIAGISNHDMLVETAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKDKPIIN 196 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +PGCPP P +AH +T+G P+LD RP YG IH+ C RRP +D G+FA+ F Sbjct: 197 VPGCPPIPVVMTGVLAHFLTFGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGKFAETF 256 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIH 307 DE R GWCL+ LGCKGP TY C+T ++ D G +P+ GH C GC+E + Sbjct: 257 DDEAARNGWCLFKLGCKGPVTYNACATTKWND-GTSFPIESGHGCIGCSEPKFWDAGPFY 315 Query: 308 QLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQK 363 + ++ + A + A + + V EL R++K Sbjct: 316 KALSMPVSATTAMLGGAAAVGVAAGAVITWHNRSTKSAAKAAHAKVTVEELTREEK 371 >UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria RepID=PHNS1_DESVH Length = 317 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 132/311 (42%), Positives = 185/311 (59%), Gaps = 5/311 (1%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 G + G++RRDF+K C A+A TMG+ A E+A ++T +RP V+++ ECTG Sbjct: 10 EGAEERLARRGVSRRDFLKFCTAIAVTMGMGPAFAPEVARALTGSRRPSVVYLHNAECTG 69 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ES+LRA P ++ L+L+TISL+YHE + AA G E H A+ G ++ +V+G+I Sbjct: 70 CSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQAVANPDG-FICIVEGAI 128 Query: 122 PLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 P DNGIY VA ++ A A+IA G+C+ +GGV AA NPTGA L + L Sbjct: 129 PTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALK 188 Query: 182 --GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD 239 G IN+ GCPPNP+N + T+ + + P++D+ NRP +G+ +H++C R HFD Sbjct: 189 HLGVNAINLAGCPPNPYNLVGTLVYYLKNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFD 248 Query: 240 AGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 AG FA F E R+GWCLY LGCKGP T NC ++F WPV GHPC GC+E Sbjct: 249 AGEFAPSFESEEARKGWCLYELGCKGPSTMNNCPKIKFNQ--TNWPVEAGHPCIGCSEPD 306 Query: 300 IGFHKGIHQLA 310 K + Sbjct: 307 FWDEKSPFYES 317 >UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae RepID=D1BNB1_VEIPT Length = 379 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 202/370 (54%), Gaps = 5/370 (1%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTES 65 TL ++RR FMK C AL A +GL ++ + P VIW+ ECTGC+ES Sbjct: 10 TLFQERRLSRRTFMKSCVALTAILGLPPTMLDTFVKAAETTELPTVIWLHGHECTGCSES 69 Query: 66 LLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 +R++ P +++L ISLEY + L+AA G +EE+ +++ G+Y+L V+G +PL + Sbjct: 70 FIRSSSPFTSDVILNMISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAVEGGVPLDE 129 Query: 126 NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 +G+YC V G + + +AA+GAAAII GSC++WGG+ AA NPT VS+ V+ GK + Sbjct: 130 DGVYCTVGGRTFKESLLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVSSVVSGKPI 189 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I +PGCPP P + H +G+ P LD + RP YG IH+ C RR FD+G F + Sbjct: 190 IKVPGCPPIPEVMTGVIMHYALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAFFDSGLFVE 249 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 +F D+ + GWCLY +GC+GP+TY +C L++ + G +P+ GH C GC+E+G + Sbjct: 250 KFDDDASKSGWCLYKVGCRGPQTYNSCGNLRWWN-GLSYPIQSGHGCIGCSEKGFWDNDV 308 Query: 306 IHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGV----SVMAVRELGRQ 361 ++ D + A+ + G + ++E G Sbjct: 309 FYKRLPDIPLANTITTADTIGTVAAVGATAAVIVHGAATLTRNKILDMKEEKRLKEQGLW 368 Query: 362 QKKDNADSRG 371 +K + + G Sbjct: 369 DEKKHNNGGG 378 >UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec RepID=A8LH34_FRASN Length = 400 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 150/362 (41%), Positives = 215/362 (59%), Gaps = 5/362 (1%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 + G++RR F+K CA + AT+ L ++ A +A ++ RP VIW+ Q+C G +E+ Sbjct: 12 RLADAGVDRRSFLKFCAGITATLALPAQLAPRVAYALDKVDRPTVIWLEFQDCAGDSEAF 71 Query: 67 LRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDN 126 LR+ +P+ +L+L ISL+YHE + AA G E+ + +A+ KG +++VV+GSIP Sbjct: 72 LRSRNPSAADLILGMISLDYHETVMAASGTAAEKARDDAVA--KGGHLVVVEGSIPTGIP 129 Query: 127 GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVI 186 G C + G+ D +R+A GAA II +G+CSA+GG+ AAG NPTGAV +++V+ G V+ Sbjct: 130 G-ACTIGGKSAEDILREAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVV 188 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 N+ GCP N N AT+ H +T+G+ P D +RP FAYG+ IH+ C+RR HFDAG FA++ Sbjct: 189 NLTGCPVNADNLTATIVHHLTFGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQ 248 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 +GD GHR GWCLY LGCKGP T+ NC +++F + G WPVA GH C GC+E G Sbjct: 249 WGDAGHRNGWCLYRLGCKGPSTFHNCPSVRF-NGGTSWPVAAGHGCVGCSEPGFWDTMSP 307 Query: 307 HQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDN 366 T + G ++A A G VG V V A RE + Sbjct: 308 FYDRLPHVATSGFDLT-ADRIGVGVLAATATGFAAHGVGKVVQHRVAARREKQAARDLVE 366 Query: 367 AD 368 D Sbjct: 367 DD 368 >UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria RepID=A7NNQ8_ROSCS Length = 417 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 190/319 (59%), Gaps = 2/319 (0%) Query: 5 NTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTE 64 + + G++RR F+K CAA++A + L S +A ++ +R PV+W+ Q+C G TE Sbjct: 9 EERLAARGVSRRQFLKFCAAMSAALALPSTFTPRIARALNTAERLPVVWLEFQDCAGNTE 68 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 S LRA P V ++VLE ISLEYHE + A GH+ E + +E Y GQY+ +V+GSIP+ Sbjct: 69 SFLRAESPGVADIVLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIA 128 Query: 125 DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG-K 183 + G+YC + G + + A A IA+G+C+ GG AA NPTGAV +++ +PG K Sbjct: 129 NGGVYCTIGGRTALSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLK 188 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 +IN+PGCP N N A + H +T+ + P D++ RP FAYG+LIH +CERR HFD+GRF Sbjct: 189 NLINLPGCPMNVINLTAVIVHYLTFKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRF 248 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 + +GDEGHR GWCLY +GCKGP+T NC + + + WP+ GH C GC Sbjct: 249 VERWGDEGHRLGWCLYKMGCKGPQTLSNCPAVGW-NGTSYWPIGAGHGCVGCMSPRFWDT 307 Query: 304 KGIHQLANVENQTPRSQKP 322 + + Sbjct: 308 MSPFYERLPNVEGFGIEVT 326 >UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO Length = 423 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 141/356 (39%), Positives = 199/356 (55%), Gaps = 20/356 (5%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKAAAE----------MAESVTNPQRPPVIWIG 55 I G++RRDFMK C++LAA + + A +A+ + ++P V W+ Sbjct: 30 ENIAKAGVSRRDFMKFCSSLAAIFAVGTPVMANAKALRPSTEHIAKVLGEVKKPLVAWLQ 89 Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 QECTGC ES LR+ TVE +VL +S+ Y+E++ AA G E+ ++L Sbjct: 90 LQECTGCMESTLRSGGTTVEEVVLNLLSVNYNELVMAASGEAAEKALEEV---NAQDHIL 146 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVS 175 VV+GSIP+KD GIYC + G+ + ++AE A+ I+A+G+C+ +G V AA NPTGAV Sbjct: 147 VVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNPTGAVG 206 Query: 176 LQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERR 235 + E++ K VIN+ GCPP AT+A+I+T GK P+LD + RP FAYG+ IH+ C RR Sbjct: 207 VDEIIKDKPVINVAGCPPIGEVITATLAYILTKGKAPELDAEGRPLFAYGQRIHDSCPRR 266 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 PHFDAG+F + F D G REGWCLY +GCKGP T+ C +Q+ G WP+ GHPC GC Sbjct: 267 PHFDAGQFVRTFDDAGAREGWCLYDVGCKGPSTFSPCPIVQWNLKSG-WPIGAGHPCIGC 325 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVS 351 E + G L+ G V + AG++ Sbjct: 326 TERDFYDRFTPFYSKLPNVT------GFGIEATAEQIGWGMTALVAGGVAVHAGIT 375 >UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH Length = 330 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 125/312 (40%), Positives = 181/312 (58%), Gaps = 8/312 (2%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMA---ESVTNPQRPPVIWIGAQE 58 + G++RRDF+K C + A+MGLS+ ++A E + RP V+W+ E Sbjct: 23 KSFYERLEGKGVSRRDFLKYCTVMTASMGLSASCVGQVASSIEKAASGTRPSVVWLHFGE 82 Query: 59 CTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 CTGC+E+ LR P V ++LETIS+EYHE + AA GHQ E++ A++ +KG+++ VV+ Sbjct: 83 CTGCSEAFLRT--PNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTHKGKFICVVE 140 Query: 119 GSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQE 178 GSI NG Y V G ++ AA IA+G+C+A+GG+ +A NP G +++ Sbjct: 141 GSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKD 200 Query: 179 VLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHF 238 + G INI GCPPNP N L+T+ + + +LD+ RP FAY +H+ C R HF Sbjct: 201 AI-GVATINISGCPPNPLNLLSTIVKYLNK-ETIELDELGRPLFAYAETVHDRCPRLKHF 258 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + F +EFG + G+CLYH+GCKGPETY NC T +F D G +P+ GHPC GC+E Sbjct: 259 ENDEFVEEFGSKEAELGYCLYHMGCKGPETYNNCPTAKFND-GTSFPIQAGHPCIGCSEP 317 Query: 299 GIGFHKGIHQLA 310 Sbjct: 318 DFWDTMTPFYEE 329 >UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63 Tax=Proteobacteria RepID=PHNS_DESDA Length = 315 Score = 359 bits (922), Expect = 7e-98, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 183/310 (59%), Gaps = 7/310 (2%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTG 61 G + GI+RRDFMK C A+A MG+ A ++A ++T +RP V+++ A ECTG Sbjct: 10 EGGEERLERQGISRRDFMKFCTAVAVAMGMGPAFATDVAAALTG-RRPSVVYLHAAECTG 68 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+E+LLR P ++ L+L+TISL+YHE + AA G EE A+ G ++ +V+G+I Sbjct: 69 CSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDG-FICLVEGAI 127 Query: 122 PLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 P + Y +AG + D + A A+++IG+C+ +GG+ AA NPT A + + Sbjct: 128 PTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYA 187 Query: 182 --GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD 239 G IN+PGCPPNP N + T+ + G+ +LD+ RP +G+ +H+ CERR HFD Sbjct: 188 DLGVKAINVPGCPPNPLNMVGTLVAFLK-GQKIELDEVGRPVMFFGQSVHDLCERRKHFD 246 Query: 240 AGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 AG FA F E R+GWCLY +GCKGPETY NC + F + WPVA GHPC GC+E Sbjct: 247 AGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNE--TNWPVAAGHPCIGCSEPN 304 Query: 300 IGFHKGIHQL 309 Sbjct: 305 FWDDMTPFYQ 314 >UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F3_9DELT Length = 328 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 125/322 (38%), Positives = 183/322 (56%), Gaps = 11/322 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGC 62 G + G+ RRDFMK C +AA MG+ A ++AE++T+ RP V+W+ ECTGC Sbjct: 11 GAVERLEKRGVTRRDFMKFCGTVAAVMGMGPAFAPKVAEALTSDTRPDVVWLHNAECTGC 70 Query: 63 TESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIP 122 +ES+LR P ++ L+L+ ISL YHE L AA GH E+ + + G+YV V++G +P Sbjct: 71 SESILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVA--AGKYVAVIEGGVP 128 Query: 123 L------KDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSL 176 + G + V G ++++ K E A A I G+C+++GGV A NPT + Sbjct: 129 TAPAGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGV 188 Query: 177 QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRP 236 E+ PGK +IN+PGCPPNP++ + T+ + +T G P+LD RP YG +H++C R+ Sbjct: 189 DELFPGKPIINVPGCPPNPYSLVGTIVYYVTKG-VPELDSVGRPVAFYGESVHDNCPRQE 247 Query: 237 HFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 F+ +FA FG E R+GWCL LGC+G ETY NC T++F WPV GHPC GC+ Sbjct: 248 FFNMDQFAPSFGSEEARKGWCLRKLGCRGVETYNNCPTVKFNQY--NWPVQAGHPCIGCS 305 Query: 297 EEGIGFHKGIHQLANVENQTPR 318 + + Sbjct: 306 QPNFWDGEDWDGKTYFYADLTD 327 >UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5S1_HYDS0 Length = 320 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 179/320 (55%), Gaps = 2/320 (0%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + G+ R+F+ + +G++ ++ ++ R PV+W ECT Sbjct: 1 METYYDFLAGRGVRYREFISFSTKICGLLGINPNEINDIINALKQKPRIPVLWFHGLECT 60 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 C+ESL+R++ P ++V ISLEY +++SA+ G + K +E+YKG Y+L ++GS Sbjct: 61 CCSESLMRSSSPVFSDMV-SLISLEYDDLISASCGENLLNYKKKIIEQYKGNYILAIEGS 119 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 I ++G CMV G + + +AAEGA AIIA GSC+++G V A NPT + S+ ++ Sbjct: 120 ITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCASFGCVQVAYPNPTKSSSVDTII 179 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 K ++ +PGCPP P + + +++ + P LD K RP YG IH+ C R+ ++A Sbjct: 180 KNKPIVKVPGCPPIPEVMASVIVYMLLKDELPPLDSKLRPKMFYGMTIHDTCYRKNFYNA 239 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 +FA+ F DEG + G CLY LGCKGP TY CS++ + + G +P+ GH C GC++EG Sbjct: 240 NKFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGWYN-GLSFPIKSGHGCIGCSQEGF 298 Query: 301 GFHKGIHQLANVENQTPRSQ 320 + A + Q Sbjct: 299 WDKTMYKEEAPITPQNFDIF 318 >UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae RepID=C7MNR7_CRYCD Length = 439 Score = 350 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 189/391 (48%), Gaps = 23/391 (5%) Query: 2 TGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT-------NPQRPPVIWI 54 TG L+ + G++RR F+KLC A+ A G S ++A+++ + PVIWI Sbjct: 8 TGFEALLEARGVSRRSFLKLCGAVVAAAGASQLTIPQVADALEKSVIGAKEGKLYPVIWI 67 Query: 55 GAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYV 114 CTGCTE+ + P +VLE ISL Y E LSAA G+ +EE K +E G Y+ Sbjct: 68 EGASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIE--AGNYI 125 Query: 115 LVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAV 174 L+ +G++ K G VAG+P +H+ +AA A A++A+GSC+ GG A N GAV Sbjct: 126 LIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAV 185 Query: 175 SLQEVLP----GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHE 230 +++ L V+NIPGCP NP +A + ++ K P LD +N+P + IH+ Sbjct: 186 GVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMMNKLPALDYENKPALIFDETIHD 245 Query: 231 HCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGH 290 +CERR HF+ G F +FG E + +CLY +GC+GP+T NC +++ + W V G Sbjct: 246 NCERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQTKANCGIVRYNNR-RSWCVEAGA 304 Query: 291 PCYGCNE--EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVA 348 PC GC E H + + + D + + G+ Sbjct: 305 PCIGCCEAAPMDPGHNWVEVNTPFMKRHRDLRIGDWTFQTEAVCLGLTAIVAAGIAVHGF 364 Query: 349 GVSVM-------AVRELGRQQKKDNADSRGE 372 G+ E K S G+ Sbjct: 365 GIKASGRMKGKFRFEEKRAWDAKHPDRSVGD 395 >UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium hafniense RepID=B8FWY3_DESHD Length = 375 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 155/337 (45%), Gaps = 14/337 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQ--RPPVIWIGAQECTGCTESLLRAT 70 +NRR+F+KL A S E+ +++ + + P+I + CTG + SL Sbjct: 2 LNRREFLKLVVKGAILGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIW 61 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 PT+ ++ Y + + G + + ++VL+V GS+ +D G Y Sbjct: 62 SPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYN 121 Query: 131 MVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185 E +D +R+ A ++A+G C+ +GG A NPT + +Q +LP + V Sbjct: 122 YAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRV 181 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 IN+ GCP +P + T+ H+ YG+ P+L+ RP +G IH +C RR ++D G FA Sbjct: 182 INVSGCPAHPDWIMGTLLHLALYGE-PELEKFGRPKMFFGETIHNNCPRRRYYDQGIFAT 240 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 + G + CLY +GCKGP TY +C ++ D WP+ PC GC E G Sbjct: 241 DIGQKE-----CLYRVGCKGPVTYADCPIRRWNDHY-NWPIGCNSPCIGCTEPGYPDLME 294 Query: 306 IHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGG 342 + P + + G + +G+ G Sbjct: 295 PFTAHFPDIPFPGGSRAATDRIGRGVLGLATLGIGGY 331 >UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria RepID=B2UPQ9_AKKM8 Length = 398 Score = 343 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 190/320 (59%), Gaps = 9/320 (2%) Query: 6 TLIHSHGINRRDFMKLCAALAATMGLSSKA-----AAEMAESVTNPQRPPVIWIGAQECT 60 + G++RR+F K C + + MG+++ A E+A+ + +RP VIW+ QECT Sbjct: 25 EHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQLQECT 84 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 GC ES +R+ + + ++VL +S+ Y E+L A G + +A+ + ++LV++GS Sbjct: 85 GCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAI---REPHILVINGS 141 Query: 121 IPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 +P+ D G+YC VAG+ + + +R AE A+ I+A+GSC+ +G + AA NPTGAV ++++L Sbjct: 142 VPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDIL 201 Query: 181 PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDA 240 +TVIN+PGCPP A + +I+T+ + P+ D ++RP AYG IH +C RR HFDA Sbjct: 202 TDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPRRAHFDA 261 Query: 241 GRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGI 300 G+F F DE RE +CLY +GCKGP+T+ C +++ + G +P+ GHPC GC E Sbjct: 262 GQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKW-NGGVSFPIQSGHPCIGCTELYF 320 Query: 301 GFHKGIHQLANVENQTPRSQ 320 + Sbjct: 321 FDRMTPFYKTLPNVNGFGVE 340 >UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium RepID=Q24X54_DESHY Length = 362 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 132/369 (35%), Positives = 210/369 (56%), Gaps = 13/369 (3%) Query: 3 GDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNP-QRPPVIWIGAQECTG 61 G+ + + GI+RRDFMKL AA A +GL A + A++V ++PPVIW+ ECTG Sbjct: 2 GNLDFLQARGISRRDFMKLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTG 61 Query: 62 CTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 C+ESLL +P++E+LVL+T+S+ YHE + AA GH E+ + L+ ++VLVV+GS+ Sbjct: 62 CSESLLATLNPSIESLVLDTLSIRYHETIMAASGHVAEQAYQDTLD---EKFVLVVEGSV 118 Query: 122 PLKDN-GIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG-GVAAAGV-NPTGAVSL-Q 177 P + YCMV G+P + + +AA A A+IA+GSC+ G G+ A P G L Q Sbjct: 119 PASEATDSYCMVGGKPFRETVLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQ 178 Query: 178 EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPH 237 + VIN+P CP P+ + T+ + +T+ P+LD++ RP YG+L+H++C RR Sbjct: 179 KHNIATPVINLPCCPVKPNTLIGTIVYYLTFSAVPELDEQARPLIYYGKLLHDNCPRRGQ 238 Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F+AG F ++ D ++ +CL GCKGP+TY +C+ + + + + + G PC GC+E Sbjct: 239 FEAGNFLSDWNDPAQKD-YCLLLKGCKGPKTYTDCAQV-WWNDNANFCINAGSPCSGCSE 296 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRE 357 G + ++A G V GA ++G L+A V+ ++ Sbjct: 297 SGFYGQFSPLY--AKQENFSLPGLGQIHADTVGKVVGGAT-VVGLGAHLIATVASGRLKN 353 Query: 358 LGRQQKKDN 366 +QKK++ Sbjct: 354 NDSEQKKED 362 >UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9 Tax=Desulfovibrio RepID=PHNS2_DESVH Length = 324 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 130/299 (43%), Positives = 179/299 (59%), Gaps = 6/299 (2%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 + RR+FMK C +A MG+ A +AE++ RP V+++ ECTGCTE LLR+ P Sbjct: 21 MTRREFMKFCGIVAVAMGMGPGFAPAVAEALQAKGRPSVVYMHGAECTGCTEGLLRSIDP 80 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 ++ L++E ISL+Y E + AA G +AL G YV ++G+IP + G+Y V Sbjct: 81 FIDILMMEVISLDYCETVMAAAGRAAHHALEDALRNPAG-YVCTIEGAIPTRKGGVYGQV 139 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP--GKTVINIPG 190 GE ++ + A GA A+IA+G+C+++GG+ AA NP+GA+ ++E L G INI G Sbjct: 140 GGETMLSLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAG 199 Query: 191 CPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDE 250 CPPNP N++ TV H++T G P+LD RP YG +H+ CERR HF+A FA F + Sbjct: 200 CPPNPVNYIGTVVHLLTKG-MPELDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESK 258 Query: 251 GHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQL 309 REGWCL+ LGC+GP TY NC T QF V WPV G PC GC+E G Sbjct: 259 EAREGWCLHKLGCRGPYTYNNCPTAQFNQV--NWPVRAGAPCIGCSEPGFWDALAPFNK 315 >UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2 Tax=Campylobacter RepID=B9KFD7_CAMLR Length = 544 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 172/319 (53%), Gaps = 11/319 (3%) Query: 4 DNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCT 63 +N+ I+ ++ ++ +GL + P +IW+ ECTGC+ Sbjct: 20 ENSQKEEKNIS----LEAVNSIIKILGLPNDFGPLAHRYFQLHTPPSLIWLHLSECTGCS 75 Query: 64 ESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPL 123 ESLLR + P +L+ + ISLEYHE +A GHQ E + LE K ++L V+G + Sbjct: 76 ESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLE--KKDFLLAVEGGVCA 133 Query: 124 KDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP 181 D Y + GE + ++K A+ A I A+G+CS++GG+ AA NPT ++ + +VL Sbjct: 134 IDP-FYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAAHPNPTKSIGISKVLE 192 Query: 182 GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG 241 K VINIPGCPP+ N +A + I + + LDD+NRP YG+ +H+ CER+ F+AG Sbjct: 193 EK-VINIPGCPPSDANIIAALCFYILFEQDMALDDQNRPLALYGKCLHDLCERKAKFEAG 251 Query: 242 RFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIG 301 FA+ F DE +EG+CL+ +GCKGP Y NC ++F WPVA GH C C+EE Sbjct: 252 NFAQSFDDEKIKEGYCLFKVGCKGPYAYNNCPKVKFN-SKTSWPVAAGHGCIACSEENFW 310 Query: 302 FHKGIHQLANVENQTPRSQ 320 G ++ Sbjct: 311 DDFGFYEKPMSNEFAYNDF 329 >UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI000197A0EB Length = 554 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 106/322 (32%), Positives = 170/322 (52%), Gaps = 8/322 (2%) Query: 19 MKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV 78 ++ + +G+ A + ++ ++W+ ECTGC+ES LR P VE+L+ Sbjct: 30 IEWVTQICNLIGIPKDYAPLCEQILSYKPLTRLVWLHMAECTGCSESFLRLDKPGVESLL 89 Query: 79 LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEP-- 136 LE ISLEYHE + A G ++ H+ L K +++LV++G + L +N + + Sbjct: 90 LEYISLEYHETIMGAVGFNAKQCLHDTL---KEEFILVIEGGVSLGENAYFLTSGADSTN 146 Query: 137 IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPH 196 + + A A AI AIG+CS++GGV AA NPT + + L + ++NIPGCPP+ Sbjct: 147 GENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPTQSQGISTFL-RQPIVNIPGCPPSEA 205 Query: 197 NFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGW 256 N + ++ + I + P D NRP ++YG+ +HE CER+ F++G F + F DE ++G+ Sbjct: 206 NMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEMCERKAKFESGDFVESFDDERLQDGY 265 Query: 257 CLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG-IHQLANVENQ 315 CLY +GCKGP NC ++F WPV GH C C+E G I + N N Sbjct: 266 CLYKVGCKGPYVANNCPKVKFN-AKTSWPVRAGHGCIACSEPDFWDSFGKIEEPINNANA 324 Query: 316 TPRSQKPDVNAKEGGNVSAGAI 337 + +KP + + + Sbjct: 325 YIKDKKPLKSLPLVHRLDDTLL 346 >UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides RepID=D2BG44_DEHSV Length = 354 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 179/360 (49%), Gaps = 40/360 (11%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR-PPVIWIGAQECTGCTESLLRATH 71 + RRDF++L A A + L + E + + PVIW+ C GCT S + Sbjct: 6 LTRRDFVQLAAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTISTINVVS 65 Query: 72 PTVENLVLE------TISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 PT+++L+L +S++YH + AA G + KG +VLV++GS+PLKD Sbjct: 66 PTIQDLLLTSVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAA--KGPFVLVIEGSVPLKD 123 Query: 126 NGIYCMVA-----GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL 180 +G+Y + G +++H+ A A A++A G+CSA+GG+ A+ NPTGA ++ E+L Sbjct: 124 DGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEIL 183 Query: 181 PGK----TVINIPGCPPNPHNFLATVAHIITYG-KPPKLDDKNRPTFAYGRLIHEHCERR 235 V+N+PGCPP+P + T+A ++ G LDD RP YG+L+H+ C RR Sbjct: 184 KEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHDQCPRR 243 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 H++ G FA + + +CL+ +GCKGP TY +CS + + W V PC GC Sbjct: 244 GHYEKGLFATKLSEP-----YCLFLVGCKGPVTYADCSDRLWNN-KTRWCVEADSPCIGC 297 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAV 355 G A + AIG+ G V L AGV+ + + Sbjct: 298 AHPGFPDEVSPMFEAPPVINSTDK---------------LAIGIAGTAVVLTAGVAAVEL 342 >UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24VQ2_DESHY Length = 319 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 8/314 (2%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT-NPQRPPVIWIGAQEC 59 M + G++RRDF+KLC A +G+ A ++AE+ N + PVIW+ Q C Sbjct: 11 MESGYQRLARRGVSRRDFLKLCTFTCAALGIDLSLAPQIAEAAEANLSKKPVIWMQGQGC 70 Query: 60 TGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDG 119 TGC+ESLL + P E ++L+ +S+ YH L AA G Q ++ + + +G Y+LV++G Sbjct: 71 TGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGEQAVQSLEDCIA--QGHYILVLEG 128 Query: 120 SIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV 179 SIP D+ YC V G+P ++ + AAE A A+IA+GSC+ +GG+ AG TGA QEV Sbjct: 129 SIPTADS-RYCFVEGKPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAG--FTGAAGAQEV 185 Query: 180 LPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD 239 L G V+N+P CP P + + + +++ PKLD NRP Y +H+ C RR H++ Sbjct: 186 LEGVKVVNLPSCPVKPDRLVGLLLYYLSHNALPKLDGLNRPEAYYRYTLHDSCYRRWHYE 245 Query: 240 AGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 G + +++ + + WCLYH GCKG +TY NC + + G + G PC GC++ Sbjct: 246 KGEYLEDWNNPDTLD-WCLYHKGCKGQDTYTNC-ANAWWNGGANFCGYAGSPCAGCSQPE 303 Query: 300 IGFHKGIHQLANVE 313 + E Sbjct: 304 YYDGFAPLFVNPKE 317 >UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria RepID=Q31DZ5_THICR Length = 813 Score = 332 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 115/298 (38%), Positives = 181/298 (60%), Gaps = 4/298 (1%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECT 60 M + S +DF + + + L + + S+ + + PVIW+ +CT Sbjct: 494 MADFEAALQSFD-KAQDFNGWVSMMTLNLQLPPEYDNLVCRSIQHLNKVPVIWLELADCT 552 Query: 61 GCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGS 120 G +E+ ++ +PT++ L+L+ ISL+YHE+L AA G E +E+ +G Y+L+V+G+ Sbjct: 553 GNSEAFIKTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLIEEDQGDYILIVEGA 612 Query: 121 IPLKDNGIYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQE 178 +PL G + + GE +++ A+ A+A++A+GSC+ GGV AA NPTGAV + E Sbjct: 613 VPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPTGAVGVSE 672 Query: 179 VLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHF 238 L +IN+PGCP NP N + T+ H I + + P+L D N+P +AY +H++CERR H+ Sbjct: 673 ALGRDDIINLPGCPVNPINVVGTLLHYIMFAEMPELGDNNKPVWAYAPRVHDNCERRGHY 732 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCN 296 DAG F KE+GDEG ++GWCL+ +GCKGP NC+ ++F + G WPV +GH C C Sbjct: 733 DAGEFVKEWGDEGAKKGWCLFEMGCKGPYADMNCAQMKFNE-GTSWPVQVGHGCIACG 789 >UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=Q7VJP5_HELHP Length = 552 Score = 329 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 171/312 (54%), Gaps = 8/312 (2%) Query: 19 MKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV 78 ++ + + + +G+ + A+ ++ ++W+ ECTGC+ S LR P +E+++ Sbjct: 30 VQWVSYICSLIGIPKEGVELCAQILSLKPPTRLVWLHLAECTGCSSSFLRLDKPDIESVL 89 Query: 79 LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGE--P 136 LE I+LEYHE + A G +++ HN L+K ++LV++G + L ++ + + Sbjct: 90 LEYITLEYHETIMGAVGFSAKKSLHNTLDKE---FILVIEGGVSLGNHAHFLTSGADSIT 146 Query: 137 IVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPH 196 + ++ A+ A AI A+G+CS++GGV AA NPT ++ + L + +INIPGCPP+ Sbjct: 147 GEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPTQSIGIDSFLS-QRIINIPGCPPSEA 205 Query: 197 NFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGW 256 N + ++ + I + P D +RP ++YG+ +H+ CER+ F++G F + F D +G+ Sbjct: 206 NIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMCERKAKFESGDFVQSFDDPHLEDGY 265 Query: 257 CLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG-IHQLANVENQ 315 CLY +GCKGP + NC ++F +P+ GH C C+E G I + N N Sbjct: 266 CLYKVGCKGPYVFNNCPKVKFN-AKTSYPIQAGHGCIACSEPDFWDSFGRIEEPLNNSNA 324 Query: 316 TPRSQKPDVNAK 327 R K N Sbjct: 325 YLRQSKTLQNLP 336 >UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1L0_PELTS Length = 332 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 124/335 (37%), Positives = 176/335 (52%), Gaps = 17/335 (5%) Query: 11 HGINRRDFMKLCAALAATMGLSSKAAAEMAE--SVTNPQRPPVIWIGAQECTGCTESLLR 68 G+ RR+F+KLC AA L + E+ E ++ +PPVIW+ CTGC+ SLL Sbjct: 1 MGLTRREFIKLCMTTAAGASLFTVIGPELQESLALAAEGKPPVIWLQGASCTGCSISLLN 60 Query: 69 ATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGI 128 + P +E ++L+ ISL YH +SAA GH V E L +K Q++LVV+G+IPLK++G Sbjct: 61 SVDPAIEKVILDVISLRYHPNISAASGHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGK 120 Query: 129 YCMVAGEPIVDH-----IRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK 183 YC +A + + ++ A A+IA G C+++GG+ NPTG V +++V+ K Sbjct: 121 YCTIAEKNGREITMLKAVQVLGNAAKAVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKK 180 Query: 184 TVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRF 243 VINI CP +P +FL TV +I+ YG P LD RP Y + IHE C RRP+FD+GRF Sbjct: 181 PVINISLCPMHPDHFLGTVVYILKYGDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRF 240 Query: 244 AKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH 303 A GDEG CL LGCKG Y +C + + W + G PC C+E Sbjct: 241 ASFIGDEG-----CLALLGCKGFVGYADCPVRGWNN-NVNWCIKAGAPCMACSEPTFPDA 294 Query: 304 KGI----HQLANVENQTPRSQKPDVNAKEGGNVSA 334 + L N +P + Sbjct: 295 ASPIYGVYPLTNKTAPASAQFEPQKTEILEKKRAG 329 >UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XE47_9HELI Length = 593 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 7/302 (2%) Query: 28 TMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYH 87 + + E + V+W+ QECTGC+ESLLR P+ E L+ + + YH Sbjct: 44 LISVPKTMLDTCVEILEYMGDLKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYH 103 Query: 88 EVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG 147 +++ + GH +A +YVL+V+GSIP+ Y + D I Sbjct: 104 DLVMVSSGHGAVAALEHA--NSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHN 161 Query: 148 AAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 A A+ AIG+CS++GG+ +A NPT +L E+ + +IN+PGCPP+ N +AT+ + Sbjct: 162 AEAVFAIGTCSSFGGIQSAYPNPTNGHALSEIFE-REIINVPGCPPSDKNIVATLLYYYL 220 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPE 267 + + P LD RP +AY + +H+ CER+ F AG F + F D +EG+CLY +GCKGP Sbjct: 221 FAESPSLDTLKRPLWAYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGPY 280 Query: 268 TYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP---RSQKPDV 324 TY NC ++F WPV GH C GC+E + G + P + Sbjct: 281 TYNNCPKVKFN-AKTSWPVQGGHGCIGCSEPNFWDNFGNIEKPLSNKSFFTLNEKFMPKI 339 Query: 325 NA 326 Sbjct: 340 IP 341 >UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14 Tax=Campylobacter RepID=Q5HT18_CAMJR Length = 497 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 114/290 (39%), Positives = 167/290 (57%), Gaps = 6/290 (2%) Query: 22 CAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLET 81 LA + L ++ A + ++W+ ECTGC+ESLLRA P+ + LV + Sbjct: 36 VKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRADLPSFDELVFDF 95 Query: 82 ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA-GEPIVDH 140 SLEYHE L AA G + EE LE+ ++L V+G + D + A GE + Sbjct: 96 FSLEYHETLMAANGTKAEELLEYVLEE---DFILAVEGGVAAIDTFFLTIGAQGESGYEI 152 Query: 141 IRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLA 200 + K A A AI A+G+CS++GG+ AA NP+ + EVL K V+NIPGCPP+ N +A Sbjct: 153 LEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQK-VVNIPGCPPSDINIIA 211 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 T++ +G P+LD++NRP +AYG+ +H+ CER+ F++G FA+ F DE + G CL+ Sbjct: 212 TLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGACLFK 271 Query: 261 LGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLA 310 +GCKGP TY NC ++F WPVA GH C C+E+ G ++ Sbjct: 272 IGCKGPYTYNNCPKVKFN-AKTSWPVAAGHGCIACSEKNFWDEFGNYEKP 320 >UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10 Tax=Deltaproteobacteria RepID=PHSS_DESBA Length = 315 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 166/319 (52%), Gaps = 28/319 (8%) Query: 11 HGINRRDFMKLCAALAATMGLSSKAAAEMAESV-TNPQRPPVIWIGAQECTGCTESLLRA 69 ++RR+F+KLC+A A +G+S + ++ ++ PVIW+ Q CTGC+ SLL A Sbjct: 1 MSLSRREFVKLCSAGVAGLGISQIYHPGIVHAMTEGAKKAPVIWVQGQGCTGCSVSLLNA 60 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 HP ++ ++L+ ISLE+H + A+ G + + EK+ G + L+V+G+IP G Y Sbjct: 61 VHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY 120 Query: 130 CMVA----------GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEV 179 C+V +++ IR A + A +A+G+CSA+GG+ AA N TG+ S+++ Sbjct: 121 CIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDF 180 Query: 180 LPGKTV----INIPGCPPNPHNFLATVAHIITY------GKPPKLDDKNRPTFAYGRLIH 229 + + +N+PGCPP+P + T+ ++ P+LDD RP +G IH Sbjct: 181 FADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLNPTEHPLPELDDDGRPLLFFGDNIH 240 Query: 230 EHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIG 289 E+C +D FA+ F G C LGCKGP TY +C+ ++ + G W V Sbjct: 241 ENCPYLDKYDNSEFAETFTKPG-----CKAELGCKGPSTYADCAKRRWNN-GINWCVE-N 293 Query: 290 HPCYGCNEEGIGFHKGIHQ 308 C GC E K Sbjct: 294 AVCIGCVEPDFPDGKSPFY 312 >UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLY8_9FIRM Length = 325 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 17/332 (5%) Query: 10 SHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTN--PQRPPVIWIGAQECTGCTESLL 67 + RRDF++LC A A +GLS+ AE+ E+ + PPV+W+ C+GC+ SLL Sbjct: 1 MRNLTRRDFLRLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLL 60 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 + P + ++ + ISL++H+ L AA G +Y GQY LVV+G++P+ Sbjct: 61 NSVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVAAGR 120 Query: 128 IYCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 + P D +R+ A A A++A+G+C+A+GG+ AAGVNPT + ++ V+ G Sbjct: 121 HTATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRG 180 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 ++N+PGCP +P L T+ H+I YG P+LD RP +G+ IH+ CERRP FD GR Sbjct: 181 TPLVNVPGCPIHPDWVLGTLLHLIRYG-MPELDKLQRPLMFFGKSIHDICERRPDFDQGR 239 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 FAK+ + G CLY LGCKGP +G+C+ +F + G W V PC C Sbjct: 240 FAKKLSEPG-----CLYKLGCKGPMAFGDCAERKFNN-GANWCVGANSPCLSCTGPEFPD 293 Query: 303 HKGIHQLANV---ENQTPRSQKPDVNAKEGGN 331 + TP Q P G Sbjct: 294 ASAPFFVKIKEYGPAGTPSPQPPHTKIFGGEQ 325 >UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit [Precursor] n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY6_DESPS Length = 300 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 164/300 (54%), Gaps = 16/300 (5%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVT--NPQRPPVIWIGAQECTGCTESLLRAT 70 + RR F++L A ++ +GL S A ++AE++ R V+W+ AQ C+GC+ S+L + Sbjct: 4 LTRRQFLELSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWLQAQSCSGCSISMLDSE 63 Query: 71 HPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYC 130 P L+ + ISL +H LSAA G ++ +G Y+LVV+GSIP C Sbjct: 64 SPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSV--QQGGYILVVEGSIPAGMPE-AC 120 Query: 131 MVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG----KTVI 186 M+ G P+ + I++AAE A +IA+G+C+A+GG+ AA NPTGAV L L +I Sbjct: 121 MMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPII 180 Query: 187 NIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 NIPGCP +P + T+ H+ +G P D++ RP + H+ C R ++ FA++ Sbjct: 181 NIPGCPSHPDWLVGTLVHLCKFG-LPPCDEQRRPKMFFASKNHDKCPRFSDYEQENFARK 239 Query: 247 FGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 F D G CL+ LGC G TY +C T++ + G + G PC GC+ K + Sbjct: 240 FSDPG-----CLFKLGCLGVSTYADC-TIRDRNGGTNACIKAGAPCIGCSSPQFAQKKSL 293 >UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae RepID=D2RD73_ARCPR Length = 352 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 178/377 (47%), Gaps = 44/377 (11%) Query: 11 HGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRAT 70 ++RR+F+KL A+ A+ L++ A + + W+ CTGCT S ++ Sbjct: 1 MKLSRRNFLKLVGAMGASTFLTTCKADLVKALEDVKDYWHICWLNGAACTGCTISFAQSA 60 Query: 71 HPTVENLVLET--------ISLE-YHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSI 121 P + ++ E I+L Y E + A G EE K + + + +L+V+G++ Sbjct: 61 DPDLVQILTEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAK-ILIVEGAV 119 Query: 122 PLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG-----VNPTGAVSL 176 + +C + G+ +H+++AAE A IIA+G C+ +GG+ A NPTGA + Sbjct: 120 ---QDEGFCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGV 176 Query: 177 QEVL----PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEH- 231 Q+ L KTVINIP CP +P + + T+A ++ G P+LD RP +G+ +H Sbjct: 177 QDFLYEVGINKTVINIPCCPAHPDHIIVTLASLML-GVVPELDKYGRPKVFFGKNMHNEL 235 Query: 232 CERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHP 291 C RP++D G F + G+EG C + +GCKGP +C+ ++ + G + V Sbjct: 236 CPYRPYYDRGIFITKPGEEG-----CRFKMGCKGPICNTDCAIRKWNN-GTSYCVETNI- 288 Query: 292 CYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVS 351 C GC E G + P V + AG +G + G+ Sbjct: 289 CIGCAEPGWPDKFSPFYAEV-------PELPRVLGVGAETIGAGLLG------ATLLGIG 335 Query: 352 VMAVRELGRQQKKDNAD 368 + AVR LG ++ K + Sbjct: 336 IHAVRHLGAKKHKKEEE 352 >UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S958_FERPL Length = 355 Score = 303 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 162/373 (43%), Gaps = 38/373 (10%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQR--PPVIWIGAQECTGCTESLLRAT 70 + RR F+K L A LS K + + E+ + ++W+ Q + CT SLL+A Sbjct: 3 LGRRGFVKALTTLGAAAFLS-KYKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQAA 61 Query: 71 HPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P + + V E + + +H + FG + + VLV++GSIP D Sbjct: 62 DPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEI-----EPDVLVLEGSIPTGDMEYA 116 Query: 130 CMVAGE-----PIVDHIRKAAEGAA-AIIAIGSCSAWGGVAAAGV----NPTGAVSLQEV 179 C +V+ + + A++ GSC+ +GG+ +A +PT AV L + Sbjct: 117 CTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQF 176 Query: 180 L----PGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERR 235 L P V+ +PGCP +P L T + G LDD RP + + +LIH++C RR Sbjct: 177 LKDKKPAVPVVLLPGCPGHPDWLLVT-LAAVLLGVKVDLDDYWRPKWFFSQLIHDNCARR 235 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGC 295 +D G FAK F + + CL+ LGC+GP TY CS ++ G + G PC GC Sbjct: 236 GFYDEGWFAKSFEESDLKYETCLFKLGCRGPMTYAACSETKWN-GGVNVCMNAGAPCIGC 294 Query: 296 NEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAV 355 G + + + R + A +G +V A+ Sbjct: 295 MHPGFPD-----ETSPFFKEQSRLEIDLTKTVFSTLTGAVLVGAGAYIV-------THAI 342 Query: 356 RELGRQQKKDNAD 368 +E G++ KK + Sbjct: 343 KE-GKEDKKGGEE 354 >UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R7_HALOH Length = 334 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 20/321 (6%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-----TNPQRPPVIWIGAQECTGCTESLL 67 + ++D++ LC +L S + + E+ V N ++ PVIWI + S + Sbjct: 1 MKKKDYVNLCRSLKTE--GSHQLSREILRVVRDFRSNNGKKLPVIWIETNDSGDNNISFM 58 Query: 68 RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127 T+P ++ + + I L Y AA G + + K ++ LVV+G+IPLK NG Sbjct: 59 NTTYPYLDQVFEDIIDLYYSNTFMAAQGEDAYQILKKVALREKREFTLVVEGAIPLKANG 118 Query: 128 IYCMV-----AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG 182 Y + V+ +R E A +A+G+C+++GG +AA N TG+V+L +VL Sbjct: 119 RYNITFITDEGPVTAVELVRWLGELAKYAVAVGTCASFGGASAASPNITGSVALGDVL-D 177 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR 242 + +IN+ GCP NP F+ T+AH+ YG P LD RP Y +H HC+RR +FD G Sbjct: 178 RQIINVSGCPINPDWFVGTLAHLQMYG-LPDLDRLGRPELFYQFTVHRHCQRRSYFDDGN 236 Query: 243 FAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGF 302 FA+E GD C++ GC GP T +C + + +P+ + PC GC E Sbjct: 237 FAEELGDIE-----CMFSQGCVGPRTGADCPYRLWDN-HVSYPIKVNTPCIGCTNEDFPD 290 Query: 303 HKGIHQLANVENQTPRSQKPD 323 + + + Sbjct: 291 GSSPFFVPLPLKRQEDEEVTP 311 >UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium RepID=B8HZS9_CLOCE Length = 299 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 18/304 (5%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNP--QRPPVIWIGAQECTGCTESLLRATHPTVENL 77 K C AA + + + + + ++ R ++W+ C+G SLL +P + L Sbjct: 5 KTCPEYAARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKYL 64 Query: 78 VLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAG--- 134 + + + Y L AA G + + +Y+L V+G++ K+NG+Y ++ Sbjct: 65 ISQMTNFLYDNSLVAAEGEKAM---EKLMGSIGDEYILAVEGAVATKNNGMYNVIGRWQG 121 Query: 135 --EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCP 192 ++ I+ E A+ +IA+G+C++ GGV+AA NP+ VS+Q +L + VI +PGCP Sbjct: 122 KPVTALNAIKLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSIL-NRKVIKLPGCP 180 Query: 193 PNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGH 252 +P F+ T+AHI+ YG+ P+LD+++RP Y LIH+ C RR FD G FAK+ G+ Sbjct: 181 CHPDWFMGTLAHILLYGE-PELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLGES-- 237 Query: 253 REGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANV 312 C++ LGC+GP T +C ++ WPV PC GC + G N Sbjct: 238 ---TCMFKLGCRGPVTRIDCPIRKWNQY-VNWPVEDDTPCIGCAQFGFPDQMEPFITYNT 293 Query: 313 ENQT 316 + Sbjct: 294 TREV 297 >UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales RepID=B1I618_DESAP Length = 375 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 161/338 (47%), Gaps = 19/338 (5%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 S++A A ++ P++W+ C G SL+ HP E ++ E + + + L Sbjct: 37 STRAPEPPAADTERLEKHPLVWLETNTCHGNILSLMNGQHPDFEAIMRELLDVYWTNTLM 96 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVA----GEPIVDH--IRKAA 145 A GHQ E + + G Y+LVV+G++P G Y + GEP + + A Sbjct: 97 GAKGHQAIEVLEKVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEPWTAWDAVVELA 156 Query: 146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A ++A+GSC+AWG A NPTG+ + V+ +TVIN+PGCP +P L T+AH+ Sbjct: 157 AAAKHVVAVGSCAAWGLPFGAHPNPTGSKPVSAVV-DRTVINVPGCPAHPDWILGTLAHL 215 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKG 265 I YG P+LD NRP YG IH C+RR +F++G FA E G+ WCLY +GCKG Sbjct: 216 IWYG-VPELDAMNRPVVFYGETIHNLCQRRHYFESGIFAGEIGEP-----WCLYKIGCKG 269 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVN 325 P TY +C + Q+C WPV PC GC + A P + P V Sbjct: 270 PVTYADCPSRQWCGEHMNWPVGANTPCIGCTSPEF-----LEHTAPFFEHLPDVRLPGV- 323 Query: 326 AKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQK 363 V A +GL ++ R K Sbjct: 324 RVTADRVGAATGLAAALGIGLHLTGKLLTGRLQKEWGK 361 >UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH Length = 290 Score = 285 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 148/266 (55%), Gaps = 16/266 (6%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ IW+ C+G SLL A +P + ++ ++L ++ L A G E N L Sbjct: 33 KKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEGEFAYEQFLNTL 92 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWG 161 + ++L+VDG++ K+NG Y ++A ++ I+ A E A ++ +G+CS++G Sbjct: 93 DTE---FILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYG 149 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPT 221 G++AA NP+G+ S+ V+ K VI +PGCP +P + T+AH++TYGK P+LD+K RP Sbjct: 150 GISAAKPNPSGSKSVDAVI-NKEVIKLPGCPCHPDWVVGTLAHLVTYGK-PELDNKGRPI 207 Query: 222 FAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVG 281 YG IH+ C RR FD FAK+FG+EG C++ LGC+GP T +C ++ + Sbjct: 208 LFYGITIHDSCTRRGFFDKRIFAKKFGEEG-----CMFKLGCRGPVTKTDCPRRKW-NGY 261 Query: 282 GVWPVAIGHPCYGCNEEGIGFHKGIH 307 WP+ C GC +E Sbjct: 262 VNWPIGDNTNCIGCAQERFPDGMEPF 287 >UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA Length = 306 Score = 285 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 16/307 (5%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESV-TNPQRPPVIWIGAQECTGCTESLLRATH 71 ++RR+F+K L +G SS E E+ RP +IW+ A C GC+ + L A Sbjct: 1 MDRREFLKNVHNLLVAIGGSSFFTMEELEAFDETDDRPDIIWLQALSCDGCSVNFLNAEI 60 Query: 72 PTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCM 131 P V ++ ++ +H + A+ G + + + +LVV+G+IP CM Sbjct: 61 P-VTEILNRFANIVFHPTIMASDGKEAMDIL---MNYKSDNMILVVEGAIPTAMP-HACM 115 Query: 132 VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLP----GKTVIN 187 + + D I K A+ A AI+A G+C+ + G+ T A S++ L V+N Sbjct: 116 MGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKYFLETNNINTPVVN 175 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 +P CP P + L T+ + I + P LD +RP + IHE C + FAK+ Sbjct: 176 LPTCPMKPKHLLYTLFYYIKHKSLPPLDMSHRPIKFFSNTIHERCIYYNDYQQNIFAKKI 235 Query: 248 GDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIH 307 GD G CL+ LGC+GP T +C + GHPC GC E Sbjct: 236 GDRG-----CLFKLGCQGPVTKNDCVKSTGEYDKYN-CIKSGHPCVGCGSENFPRTIMFK 289 Query: 308 QLANVEN 314 + + Sbjct: 290 RSDDKRE 296 >UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum RepID=B2TM84_CLOBB Length = 313 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 151/306 (49%), Gaps = 20/306 (6%) Query: 16 RDFMKLCAALAATMGLSSKAAAEMAESVTN------PQRPPVIWIGAQECTGCTESLLRA 69 +D+MK A G K A EM + T ++ IW+ C G SLL + Sbjct: 13 KDYMKNVG-CARGEGKPFKFAKEMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNS 71 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 P + ++ +++ + + G + E + L K Y+L+V G+IP+ +G+Y Sbjct: 72 EMPDLPFVLKNLVNMTFFGSICGDQGEKAYERILDTLNSDKE-YILLVCGAIPINADGLY 130 Query: 130 CMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 ++A ++ +++AA+ A II+IG+C+ +GG AA N + A+S++E L Sbjct: 131 TVLATYQGRKITAMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRND 190 Query: 185 VINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFA 244 +INIPGCP NP L TV ++I YG LD++ RP YG+ IHE C +R FD G FA Sbjct: 191 IINIPGCPANPVWTLGTVGYLINYG-TIDLDEEGRPVAFYGKTIHEICPKRKFFDKGIFA 249 Query: 245 KEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHK 304 K+ G+ CLY LGCKGP T C ++ WP+ PC GC +G Sbjct: 250 KKLGNPE-----CLYELGCKGPITKVYCPISRWNQ-SDNWPIGDRTPCIGCARKGFPDAM 303 Query: 305 GIHQLA 310 Sbjct: 304 EPFTKY 309 >UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria (class) RepID=D1VJL8_9ACTO Length = 416 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 153/380 (40%), Gaps = 54/380 (14%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQ-ECTGCTESLLRATHPTVENLV 78 KL AA + + A E + + ++WI A C G + +L AT P++E + Sbjct: 30 KLGVGAAARERPAEQVAPERVPAWEDQAPIHLLWINAGLSCDGDSVALTAATQPSIEEIA 89 Query: 79 LETIS-----LEYHEVLSAAFGHQ-----VEENKHNALEKYKGQYVLVVDGSIPL---KD 125 L + + ++ G + E A +VLVV+GSIP Sbjct: 90 LGALPGLPKVAVHWPLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERING 149 Query: 126 NGIYCMVAGE-------PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQE 178 +G + + + + + A A A++A+G+C+ +GG+ A NPTGA+ + + Sbjct: 150 DGYWTGFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPD 209 Query: 179 VL-------PGKTVINIPGCPPNPHNFLATVAHII----TYGKPPKLDDKNRPTFAYGRL 227 L G ++ +PGCP P N T+ +++ LDD+ RP + +G Sbjct: 210 YLGWDWKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTT 269 Query: 228 IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVA 287 +H+ C+R ++ GRFA +G+ CL LGC GP N + + G Sbjct: 270 VHDGCDRAGFYEEGRFAHAYGEPE-----CLVKLGCWGPVVKCNVPKRGWMN-GVGGCPN 323 Query: 288 IGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLV 347 +G C C G P ++ G VS+G + G V+ + Sbjct: 324 VGGICIACTMPGFPDR----------------FMPFMDTPPGAKVSSGLSTVYGKVILNL 367 Query: 348 AGVSVMAVRELGRQQKKDNA 367 +++ R ++ + Sbjct: 368 RKITMHTADREPRWRRPGDE 387 >UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria RepID=Q1NM22_9DELT Length = 343 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 146/302 (48%), Gaps = 16/302 (5%) Query: 14 NRRDFMKLCAALAATMGLSSKAAAEMAESVTNP----QRPPVIWIGAQECTGCTESLLRA 69 +RR+F+K + G + + + + RP ++W+ C+GC+ SLL Sbjct: 17 SRREFLKKIYRVVVAAGAAPLLSFDELLAAEGGENPFPRPNLVWLQGASCSGCSLSLLNT 76 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 TV +L+ L YH L+ A G+QV + Y+LV++G IP Sbjct: 77 EEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTKLTTGV-EPYLLVLEGGIPAGMP-HA 134 Query: 130 CMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TV 185 C++A P + + + A+GA A +A+G+C+A+GGVAA TG VSL L + + Sbjct: 135 CLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRDIAVPL 194 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 +N+P CP P + + T+ H + + P+LD + RP + +H+ C R F FA+ Sbjct: 195 VNLPSCPMKPEHLVYTLLHYGRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQELDFAR 254 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 G++G CL LGC+GP + +C L + + + + GHPC GC E Sbjct: 255 HIGEDG-----CLLELGCQGPVSNNDCPDLGY-NGNLNYCLKAGHPCTGCAGELFPRPVL 308 Query: 306 IH 307 H Sbjct: 309 YH 310 >UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria RepID=D2ATL3_STRRD Length = 358 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 148/356 (41%), Gaps = 54/356 (15%) Query: 44 TNPQRPPVIWIGAQ-ECTGCTESLLRATHPTVENLVLETIS-----LEYHEVLSAAFGHQ 97 ++WI A C G + +L AT P++E +VL + + ++ G Sbjct: 15 QEEPVVHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPM 74 Query: 98 -----VEENKHNALEKYKGQYVLVVDGSIPL---KDNGIYCMVAGEPIV-------DHIR 142 E A +VLVV+GSIP K G +C P + + Sbjct: 75 QGADVFIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWLD 134 Query: 143 KAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVL-------PGKTVINIPGCPPNP 195 + A A A++A G+C+ +GG+ A NPTGA+ + + L G ++N+PGCP P Sbjct: 135 RLAPKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQP 194 Query: 196 HNFLATVAHII----TYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEG 251 N T+ +++ LD+ RPT+ +G+ +HE C+R +++ G+FA E+G Sbjct: 195 DNLSETILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQGQFATEYGSPK 254 Query: 252 HREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN 311 CL +GC GP N + + G +G C C G Sbjct: 255 -----CLVKIGCWGPVVKCNVPKRGWMNGIG-GCPNVGGICIACTMPGFPDK-------- 300 Query: 312 VENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNA 367 P ++ G VS+ G G V+ + G+++ V + + +KK Sbjct: 301 --------FMPFMDEPPGARVSSTVSGAYGSVIRTLRGITLKTVDKEPKWRKKGRE 348 >UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9 Tax=Methanosarcina RepID=Q46BG0_METBF Length = 411 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 162/393 (41%), Gaps = 76/393 (19%) Query: 2 TGDNTLIHS------HGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIG 55 T ++ L+ ++RR F+K L A++ L ++A+++ + V+W+ Sbjct: 6 TDNDDLLEKFKNLDFMKMDRRTFIKAVGVLGASLFL-QTYKNDLAKALEFSE-TKVVWLH 63 Query: 56 AQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQV------------EENK 102 +GCT S+L P + + E + L YHEVL G V E Sbjct: 64 GVMDSGCTISMLDGGSPDIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDLNSEIVL 123 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNG--IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 + LEK KG YVLV +G+I G Y M+ G + KAA+ A AI+AIG+C+ Sbjct: 124 DDILEKEKG-YVLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATN 182 Query: 161 GGVAAAGV--------------NPTGAVSLQEVLPG-KTVINIPGCPPNPHNFLATVAHI 205 GGV +A + + ++L K VIN+ GCP +P T+ + Sbjct: 183 GGVNSAKSDIVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAV 242 Query: 206 ITYGKPPK------LDDKNRPTFAY--GRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257 + LD RP + +IH++C RR ++D G F G C Sbjct: 243 VLGKIKIPDDLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPK-----C 297 Query: 258 LYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP 317 L+ LGCKGP T+ +C+T + + + G PC GC + G + + Sbjct: 298 LWKLGCKGPYTHADCATRNW-NGHLNYCPQAGSPCIGCVQPGFPDSTRPFFVEFEK---- 352 Query: 318 RSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGV 350 G++G + +AGV Sbjct: 353 -------------------TGIVGTNITTIAGV 366 >UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation pathway signal n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRB7_9DELT Length = 299 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 150/304 (49%), Gaps = 14/304 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 ++RR+F+K+ AALAA G+ A Q P ++++ CTGC+ SLL+A P Sbjct: 1 MDRRNFLKMAAALAAAFGVRGLPEPVAAALKEIDQVPKILYLQGLSCTGCSISLLQAASP 60 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 T ++ + L +H LS+ G Q E + ++ G+Y L ++G++P C++ Sbjct: 61 TPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVPGTMP-RACVI 119 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT----VINI 188 +P ++ +AA + +A+GSC+ GG+ AA NPTGA+ L+E + +I+I Sbjct: 120 DHQPFASYLERAARTMSGAVAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDI 179 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG 248 GCP +P T+ H++ G P L P + R +HE C R F FA++ G Sbjct: 180 RGCPIHPDWLWHTITHLVKVG-LPSL-VNGAPQAFFQRRLHELCPRYYDFQEEIFAEKMG 237 Query: 249 DEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG-IH 307 + G CL+ LGC GP T+ +C T + + G W + PC GC K Sbjct: 238 ERG-----CLFKLGCLGPITFADCPTR-WWNGGRTWCIDTNAPCIGCASPDFARKKDLPF 291 Query: 308 QLAN 311 N Sbjct: 292 YRLN 295 >UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM4_9BACT Length = 310 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 160/304 (52%), Gaps = 15/304 (4%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAE---SVTNPQRPPVIWIGAQECTGCTESLLRA 69 ++RRDF+K C ++A + + A++AE + + RP +++I Q CTGC+ SL+ Sbjct: 2 LSRRDFLKRCRDISAVVFGAEVFGAQIAEGFMKIQSADRPQLVFIQGQSCTGCSTSLMYG 61 Query: 70 THPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIY 129 + +++ + ++ H LS + G+ G ++LV++GSIP + Sbjct: 62 NETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEV--TSAGGHILVLEGSIPAEM-KKA 118 Query: 130 CMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPG----KTV 185 CM+ EP+ D ++K E A+A++A GSCS +GG+ A+G N TGA+ + + + K + Sbjct: 119 CMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGAIDIVQYMRETGISKPL 178 Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245 I IPGCP +P + TVA+I+ GK P ++D P +G LIH +C R +F + + Sbjct: 179 IKIPGCPVHPDRLMGTVAYILGAGKMPDMED-GIPVQYFGDLIHNNCTRFQYFSQDIYLE 237 Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKG 305 ++ + H CL GC+G T +C+ ++ G V PC GC E F + Sbjct: 238 DYAKDKHS---CLLKKGCRGTITKSDCALRRWN-GGVNVCVESNAPCVGCINEKWPFKEN 293 Query: 306 IHQL 309 I+ Sbjct: 294 IYLK 297 >UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) n=23 Tax=Bacteria RepID=Q0RN51_FRAAA Length = 359 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 149/348 (42%), Gaps = 50/348 (14%) Query: 47 QRPPVIWIGAQ-ECTGCTESLLRATHPTVENLVLETI----SLEYHEVLSAAF--GHQVE 99 ++WI C G T S+ A+ P +E+++ I ++ H + + G + Sbjct: 18 DEVHILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPTLGGEEFL 77 Query: 100 ENKHNALEKYKGQYVLVVDGSIPL---KDNGIYCMVAGEP-------IVDHIRKAAEGAA 149 A +VLV++GSIP G + +P I I + A A Sbjct: 78 APFRAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAW 137 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK-------TVINIPGCPPNPHNFLATV 202 A+IAIG+C+A+GG+ A NPTG++ L + L ++N+PGCP P +F+ T+ Sbjct: 138 AVIAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETL 197 Query: 203 AHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL 258 ++ + PP LDD++RP + +GR +HE C+R +++ G FAK++ C Sbjct: 198 TWLLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPK-----CQ 252 Query: 259 YHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPR 318 +GC GP N + G +G C C G Sbjct: 253 VKIGCWGPVVNCNVPKRGW-MGGVGGCPNVGGICIACTMPGFPDK--------------- 296 Query: 319 SQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDN 366 P ++ G ++S+ A+ G V+ + G++ V R + + Sbjct: 297 -FMPFMDMPPGASLSSLAVKPYGSVIRRLRGITNATVNREPRWRHNRD 343 >UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular organisms RepID=A4YF94_METS5 Length = 322 Score = 267 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 143/335 (42%), Gaps = 36/335 (10%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLV-LETISLEYHEVLSAAFGHQVEENKHNALEK 108 ++W+ C G T S+L A+ P + + + + L +H LS G +++ + +E Sbjct: 3 NLLWLQGGACGGNTLSVLNASDPDILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIEG 62 Query: 109 YKGQYVLVVDGSIPLKDNG--IYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 +L+ +GSI G + M AG+P++ +R+ A A I+A+G C+++GG+ AA Sbjct: 63 KINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAA 122 Query: 167 GVNPTGAVSLQEVLP--------------GKTVINIPGCPPNPHNFLATVAHIITYGKPP 212 NPT + LQ G VIN+ GCP +P + T+ I+ Sbjct: 123 DPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEMNQ 182 Query: 213 K-LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 + LD+ NRP Y C R+P+F KEFG H+EG + LGC+G T + Sbjct: 183 EMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEFG---HKEGCLFFDLGCRGSYTRSS 239 Query: 272 CSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGN 331 C+ + + + +G PC GC E + + PR + P Sbjct: 240 CNNILWNNQSS--KTRVGTPCMGCTEFDFP-TFNFFKTEKNRSGIPR-RLPL-------- 287 Query: 332 VSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKDN 366 + G + G + E +KK + Sbjct: 288 --GVSKGAYVTFAAIARG-AAPQFLERPLIRKKGD 319 >UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2V0_9DELT Length = 305 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 30 GLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEV 89 GLS A A + + + P ++++ CTGC+ SLL+A P+ +++ + L +H Sbjct: 22 GLSQPARAALND-IDPRTVPKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTD 80 Query: 90 LSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA 149 LSA G Q E ++ ++ G YVL ++G+IP C++ +P D++ +AA + Sbjct: 81 LSATSGAQAMELINSFIDGQAGDYVLAIEGAIPAGMPE-ACIIDHKPFADYLERAARTMS 139 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK----TVINIPGCPPNPHNFLATVAHI 205 +AIGSC+ GG+ AA NPTGAV L E + VINI GCP +P T+ H+ Sbjct: 140 GAVAIGSCACDGGIPAAEGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHL 199 Query: 206 ITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKG 265 + G P ++ P + R +HE C R F FA++ GD G CL+ LGC G Sbjct: 200 VLVGNPNLVN--GSPRVFFERRLHELCPRYYDFQEEIFAEKLGDRG-----CLFRLGCLG 252 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 P T+ +C T + + G W V PC GC K + Sbjct: 253 PITFADCPTR-WWNGGRTWCVDTNAPCIGCASPKFARQKDL 292 >UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2 Tax=Euryarchaeota RepID=Q0W5V7_UNCMA Length = 388 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 112/383 (29%), Positives = 170/383 (44%), Gaps = 46/383 (12%) Query: 12 GINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATH 71 G+ RR F+ AA + + +A ++ + ++ ++W+ C GCT S L + Sbjct: 13 GLGRRAFL-ALAATTGAAAFLAMHSPGVAAAIADSRK-KLLWLRGSGCGGCTASFLNGGY 70 Query: 72 PTVENLVLET-ISLEYHEVLSAAFG----------HQVEENKHNALEKYKGQYVLVVDGS 120 P V + + YH+ L A G K L G YVLVV+G+ Sbjct: 71 PDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTYNALKKLDLLIDSGDYVLVVEGA 130 Query: 121 IPLKDNGI--YCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSL-- 176 IP +G YC G + + +AAE A IIA+G+C+A+GG+++AG + T A + Sbjct: 131 IPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGTCAAFGGISSAGRSVTDARGVAY 190 Query: 177 ----------QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGR 226 E+ K VIN+PGCP +P FL T+A +++ G +DD RP + + Sbjct: 191 TGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLADVLS-GAEVTVDDYRRPAAFFSK 249 Query: 227 L-IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWP 285 IH+ C RR +D G+ +F EG CLY GCKG TY +C ++ + G Sbjct: 250 SAIHDTCTRRGSYDQGQRDTQFAGEG-----CLYGAGCKGMITYADCPVRRW-NGGVSTC 303 Query: 286 VAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVG 345 G PC GC E + D + G NV GA +LG + Sbjct: 304 TLAGGPCVGCVEAEFPGAFMPFFN----------RVEDRSLISGTNVDLGAKVILGAAI- 352 Query: 346 LVAGVSVMAVRELGRQQKKDNAD 368 L AGV + +G + + D Sbjct: 353 LGAGVHAVKRLAIGDNDNEGDGD 375 >UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QHS8_9SPHI Length = 326 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 85/321 (26%), Positives = 134/321 (41%), Gaps = 36/321 (11%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEK 108 V+W+ C+G T S L A PTV +LV + +++ +H + G QV ++ + Sbjct: 3 NVLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSG 62 Query: 109 YKGQYVLVVDGSIPLKDNGIYCM--VAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 +LV +GSI NG M A P+ D +R ++ ++AIG C+ WGG+ A Sbjct: 63 RTQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAV 122 Query: 167 GVNPTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIITYGKPP 212 NP+ + +Q + K VINIPGCP +P + I G+ Sbjct: 123 APNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVA-IATGRIG 181 Query: 213 K--LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYG 270 +D+ +RP + + C F G G R G Y +GC+GP T Sbjct: 182 DVLIDEYHRPKTFFTDFVQTGCTNVVSFAQKVD----GGFGKRGGCLFYEVGCRGPMTRA 237 Query: 271 NCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFH--------KGIHQLANVENQTP--RSQ 320 +C+ + + HPC GC E G H K +H L + +TP S+ Sbjct: 238 SCNRILWNRQSS--KTRANHPCLGCTEPGFPHHDLEKGSVFKTMHYLGFLPKETPTGTSK 295 Query: 321 KPDVNAKEGGNVSAGAIGLLG 341 V +G+ ++G Sbjct: 296 LGYYLRAGFEKVVSGSERIVG 316 >UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei RepID=A1RXR6_THEPD Length = 423 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 99/432 (22%), Positives = 166/432 (38%), Gaps = 95/432 (21%) Query: 8 IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67 + I+RRDF+K+ A L+ +A + ++W AQ+C G T +L+ Sbjct: 3 LKGISISRRDFLKMGGVAALLASLNWDELVRLAVAQAQSGSINIVWFEAQDCAGNTTALI 62 Query: 68 RATHPTVENLVLE--------TISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDG 119 +AT P + +++ + L +HE + +G A + +VLV++G Sbjct: 63 QATEPDLIDVLGGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLEG 122 Query: 120 SIPLKDNG-------IYCMVAGE-----PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 S P + YC + E V+ +R+ A A++ +G+C+++GG+ A Sbjct: 123 SFPQDEKAGGPPGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVANK 182 Query: 168 --------------VNPTGAVSL---------------------QEVLPG---------- 182 +PTGAV + + G Sbjct: 183 VLERVPGLPSSSWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEIR 242 Query: 183 ---KTVINIPGCPPNPHNFLATVAHIITYGK----PPKLDDKNRPTFAYGRLIHEHCERR 235 + + +PGCP N + L +A ++ + K P+LD RP F +G +HE C R Sbjct: 243 PDCRPAMAVPGCPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPRA 302 Query: 236 PHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYG 294 + AG F G+ +R CLY +GCKGP NC + V GV P G C G Sbjct: 303 GSYAAGDFRAYPGENSYR---CLYAVGCKGPI--SNCPWNKLGWVNGVGGPTRTGGVCIG 357 Query: 295 CNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMA 354 C G + P +G G+ + L+AGV + Sbjct: 358 CTMPGFTDAYEPFYKPLQAPRVP----------------SGLEGV-AAIAALLAGVGLAY 400 Query: 355 VRELGRQQKKDN 366 +++K+ Sbjct: 401 GASKSIEKRKEE 412 >UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BH99_9BACT Length = 384 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 90/351 (25%), Positives = 147/351 (41%), Gaps = 58/351 (16%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETIS-----LEYHEVLSAAFGHQVEENKH 103 WI C GC+ + + AT P+VENL+ TI + +H VL+ G + + Sbjct: 20 VHAFWIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFR 79 Query: 104 NALEKYKG-QYVLVVDGSIPLKDNGIYCMVAGE-----------------PIVDHIRKAA 145 A + G +V++ +GSI D G+ G P + + + Sbjct: 80 LAAKGELGAPFVVLCEGSI--MDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMS 137 Query: 146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGK-------TVINIPGCPPNPHNF 198 E AAA++A+G+C+ WGG+ AA NPT + S+ ++L V+NIPGC P N Sbjct: 138 EHAAAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNI 197 Query: 199 LATVAHIITY----GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHRE 254 T+ ++ + P+ D+ RP++ + +H C R ++ G FA+E GD+ Sbjct: 198 TETIVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKE--- 254 Query: 255 GWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVEN 314 CL +GC GP N + + G + +G PC GC G Sbjct: 255 --CLVEVGCWGPVVQCNINKRGAINHVG-GCMNVGAPCIGCTMPGFPD------------ 299 Query: 315 QTPRSQKPDVNAKEGGNVSAGAIGLLGGVVGLVAGVSVMAVRELGRQQKKD 365 S P G VS+ + G V+ + +S+ + + K Sbjct: 300 ----SFAPFYKTPPGTMVSSNISRVTGTVIRNLREMSMSNLNRTAKWDKDG 346 >UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH Length = 306 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 79/292 (27%), Positives = 121/292 (41%), Gaps = 26/292 (8%) Query: 50 PVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++WI C+G ++S L +PTV + E I+L +H +S + + + + Sbjct: 3 NLLWIQGLTCSGNSQSFLCGENPTVSDFFSE-INLLWHPEIS--YSEDIMDILNGIYRDE 59 Query: 110 KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVN 169 L+++G++ N + + I I K A IIA+G+C+ G A N Sbjct: 60 IKLDFLIIEGAVTS--NKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGNYPALY-N 116 Query: 170 PTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIITYGKPPKLD 215 P +Q L GK VINI GCP +P TV ++YG KLD Sbjct: 117 PDQITGIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLT-LSYGLDLKLD 175 Query: 216 DKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTL 275 +NRP Y L H+ C R +F+ A+EFG +EG Y LGC+GP T+ C+ + Sbjct: 176 SQNRPKELYMYLSHDGCTRNEYFEWKVEAEEFGT---KEGCLFYELGCRGPVTHAPCNRI 232 Query: 276 QFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAK 327 + G G PC GC E + + + Sbjct: 233 LWN--GRSSKTRAGMPCIGCTEFDFPYRENYLETKKYMGIPQDIPLGVTKRA 282 >UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUE6_SULAA Length = 312 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 30/293 (10%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + T ++WI C G + S L + + T+ ++ L I++ YH + ++ Sbjct: 2 AGTKKGLKNLVWIQGLTCNGNSHSFL-SINDTMLDVFLSNINILYHP--MLTSEMEFKDV 58 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 L + LVV+G++ K + ++ G + + + + + I+A+G+C+ +G Sbjct: 59 YKLLLSGKESLNFLVVEGAVNTKKDEVF--FQGFDVFEILNNLKDKSDYILAVGNCACYG 116 Query: 162 GVAAAGVNPTGAVSLQEVLPGK--------------TVINIPGCPPNPHNFLATVAHIIT 207 A LQ K +INI GCP +P + T+ + Sbjct: 117 NFPALYN--ENVKGLQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILS-LN 173 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPE 267 +G KLD+ NRP Y L H+ C R +F+ A EFG +EG Y LGC+GP Sbjct: 174 FGYDIKLDNLNRPKDFYMYLAHDGCIRNEYFEWKVEAHEFGT---KEGCLFYELGCRGPL 230 Query: 268 TYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN---VENQTP 317 T+ C+ + + + G PC GC E + + + P Sbjct: 231 THSPCNKILWNEKSS--KTRSGMPCIGCTEFDFPLRSKYFETKTNIGIPEEVP 281 >UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGK5_RHOVA Length = 358 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 131/320 (40%), Gaps = 26/320 (8%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLV-LETISLEYHEVLSAAFGHQVE 99 ++ P R ++W+ + C GC+ SLL A P + + L I + H LS A G Sbjct: 16 DATGRPARLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYH 75 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNG----IYCMVAGEPIVDHIRKAAEGAAAIIAIG 155 L + +L V+G+I NG G+P++ + + A A +IAIG Sbjct: 76 ALIARILSGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIG 135 Query: 156 SCSAWGGVAAAGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLAT 201 SC+A+GGV+AAG N T A L G INI GCP +P + T Sbjct: 136 SCTAYGGVSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVET 195 Query: 202 VAHIITYG-KPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + + LD RP F L+H C R ++ AKE G + G + H Sbjct: 196 LVQLGDGTFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEPG----QLGCLMEH 251 Query: 261 LGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQ 320 LGC G + +G+C+ + G + G+PC GC E G + P Sbjct: 252 LGCIGTQVHGDCNMRAWNGEGS--CIRGGYPCIGCTEPTFGERDAPYLETPKRGGIPVGL 309 Query: 321 KPDVNAKEGGNVSAGAIGLL 340 D+ +++ A Sbjct: 310 PTDMPKAWFVALASLAKAAT 329 >UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria RepID=A6QAV6_SULNB Length = 298 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 29/277 (10%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + + +P ++W+ + C G T S L HP + +++ L +H VL +A+ Sbjct: 1 MQSRNKPKLLWLQSITCNGNTHSFLN--HPELFSIL-SHFELVHHPVLESAY------TL 51 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 N ++ +L+V+G+ K+ G + +G + ++K A+ A II+ G+C+ +GG Sbjct: 52 ENVIKGEVPCDLLIVEGA--FKEEGF--LKSGVEVSSVLKKYADKAKYIISAGTCATFGG 107 Query: 163 VAAAGVNPTGAVSL---------QEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 + +P + +I++PGCP +P + +I G Sbjct: 108 IFK-ENDPEEISGFCFDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLL-MIASGNKVP 165 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD +RP YG +H C R +F+ AK+FG +EG Y GC+GP T G+C+ Sbjct: 166 LDTLHRPVELYGYTVHTGCTRNEYFEWKIDAKQFGV---KEGCLFYEQGCQGPYTRGSCN 222 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLA 310 + + D +G PC+GC E G Sbjct: 223 KILWND--TSSKTRVGTPCFGCTEPGFPQAGLYRTKT 257 >UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria RepID=Q2W8A6_MAGSA Length = 384 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 113/294 (38%), Gaps = 26/294 (8%) Query: 39 MAESVTNPQRP----PVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAA 93 M + V +RP + W+ C G T S L + P + L I + YH LS Sbjct: 61 MMKEVAGGRRPGMNLNLYWLQCGGCGGDTMSFLNSETPDILQLFSGLGIDVVYHPSLSNT 120 Query: 94 FGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG--IYCMVAGEPIVDHIRKAAEGAAAI 151 + +LVV+G++ G +Y P D + A A + Sbjct: 121 SQAEQHSQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFV 180 Query: 152 IAIGSCSAWGGVAAA-----------GVNPTGAVSLQ-EVLPGKTVINIPGCPPNPHNFL 199 +A G+C+A+GG A P G + G V+N+ GCP +P Sbjct: 181 VAAGTCAAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVLS 240 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 + + + T + P L NRP YG ++H+ C R + + FG+ +G + Sbjct: 241 SVLTALATGAELP-LAPLNRPLPWYGMMVHQGCTRNEYHEYRVEEDNFGE----KGCLFF 295 Query: 260 HLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVE 313 H+GC GP G C+ L + G PC+GC + N+E Sbjct: 296 HMGCHGPLVTGPCNKLLWNQRSS--KTRAGVPCFGCTSPEFPQDHAFFETRNIE 347 >UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ Length = 442 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 100/432 (23%), Positives = 157/432 (36%), Gaps = 112/432 (25%) Query: 13 INRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 I RRDF++ + AA L+ A + A ++W AQ+C G T ++++AT P Sbjct: 4 ITRRDFIRAGSLAAALSALNWSALVKAAGEAVRSGAVNIVWFEAQDCAGNTTAVIQATDP 63 Query: 73 TVENLVL--------ETISLEYHEVLSAAFGH--------------------------QV 98 ++ +++L T+ L +HE + +G Sbjct: 64 SLLDVLLGTTPLVGPGTVRLIFHETVMPQWGTYHVKQASDVASEKILESYVEHQPPPGDA 123 Query: 99 EENKHNALEKYKGQYVLVVDGSIPL----------KDNGIYCMVAGEPIVDHIRKAAEGA 148 + + G YVLV++GS P ++ G YC+V + ++ A Sbjct: 124 MKILEEIAQGKYGPYVLVLEGSFPQEYGIEGSNIKQEGGYYCVVGHKTCTAWLKSLLNNA 183 Query: 149 AAIIAIGSCSAWGGVAAAG--------------VNPTGAV-------------------- 174 A++A+G+C+A+GG+ A +PTGA+ Sbjct: 184 LAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIKGAIHQPYFQ 243 Query: 175 -------------SLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK---PPK----- 213 + + K + +PGCP N + L T+A + P Sbjct: 244 PEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGYLKPDVLERK 303 Query: 214 --LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 LD RP F + +HE C R + AG F G +G CL+ +GCKGP N Sbjct: 304 AFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRPT---PGAGDGKCLFEVGCKGPI--SN 358 Query: 272 CSTLQFCDVGGV-WPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGG 330 C + V GV P G C GC G + PD A G Sbjct: 359 CPWNKVGWVSGVGGPTRTGGVCIGCTMPGFTDAYEPFW-----APLNAPRLPDTTAIAVG 413 Query: 331 NVSAGAIGLLGG 342 + A+G LG Sbjct: 414 VGTGVALGALGA 425 >UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N0_NAUPA Length = 288 Score = 234 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 28/272 (10%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + VIWI A C GCT S L + + E ++ EYH + + Sbjct: 4 KLNVIWIDAVTCYGCTHSFLNYKEIS---SLFEKVNFEYHPLFLSNDLE----------- 49 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 K +L+V+G++ + G + + I K A ++A+G+C+ +GG+ G Sbjct: 50 -IKQCDLLIVEGALKNNYPRL-----GYSLNELISKLFFKAKKVLALGTCAVYGGMFGEG 103 Query: 168 VNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRL 227 + +IN+PGCPP+P A V +I+ K LDD NRP + Sbjct: 104 LMYNKEQKGHYYKCRDKIINLPGCPPHPDWI-AFVLDMISENKKIALDDLNRPKDIFAYT 162 Query: 228 IHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVA 287 H C R +F+ A+ FG +EG Y GC+GP T+ +C+ + + +V Sbjct: 163 SHMGCTRNEYFEWKIDAENFG---TKEGCLFYFQGCQGPFTHSSCNKVLWNEVSS--KPR 217 Query: 288 IGHPCYGCNEEGIGFHKGIHQLAN--VENQTP 317 G PC+GC E + + P Sbjct: 218 AGTPCFGCTEPNFPKNDLFKTDTFMGIPANIP 249 >UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFB4_METS5 Length = 432 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 142/408 (34%), Gaps = 105/408 (25%) Query: 11 HGINRRDFMKL--CAALAATMGLSSKAAAEMAESVTNPQRP-PVIWIGAQECTGCTESLL 67 G+ RRDF+K+ AL ++ LS + E+ +P ++W G C G T + + Sbjct: 1 MGLTRRDFLKVSGVTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFI 60 Query: 68 RATHPTVENLV-------------------LETISLEYHEVLSAAFGHQVEENKHNALEK 108 A +P+VE++V L I+L YH +L + AL Sbjct: 61 DAMNPSVEDVVTGVYFNGKPITLRQPSIPDLGMINLVYHPILMP-QDNMAYATMEMALNG 119 Query: 109 YKGQYVLVVDGSIPLKDNGIY--------CMVAGEP------IVDHIRKAAEGAAAIIAI 154 +VLVV+G++ + Y C +P + + + AAA++A Sbjct: 120 ELDPFVLVVEGTMFDEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVAT 179 Query: 155 GSCSAWGGVAAAGV-----NPTGAVSLQE------------------------------- 178 G+C+ +GG+ A +PT A+ + + Sbjct: 180 GACATYGGIPATTNGLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIY 239 Query: 179 -------------------VLPGKTVINIPGCPPNPHNFLATVAHIITY----GKPP--K 213 G +I+I PP + T+ + Y G P Sbjct: 240 SVTNSPVNTSWPGPSYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADD 299 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD NRP F YG H++C R F G FA EFGD C Y LGCKG T N Sbjct: 300 LDVFNRPKFFYGNETHQNCPRAGFFAQGIFAYEFGDPQ-----CTYSLGCKG--TEANSP 352 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQK 321 VGGV G C C G P + Sbjct: 353 APLLGWVGGVGGCTRGGVCIACTAPGFPDLYEPFYAPPNAPTIPSTTL 400 >UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH Length = 347 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 26/296 (8%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEE 100 + P V+WI + C GC+ SLL A ++ I + +H LS G + + Sbjct: 10 ASAKPGVLNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQ 69 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNG----IYCMVAGEPIVDHIRKAAEGAAAIIAIGS 156 + L+ + L V+G++ +G G P+++ + + A A +A+G+ Sbjct: 70 ILEDCLQGRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGT 129 Query: 157 CSAWGGVAAAGVNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLA-T 201 C+A+GG+ A G NPT A LQ G VIN+ GCP +P Sbjct: 130 CAAYGGITAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDAL 189 Query: 202 VAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHL 261 LD RP F +L+H C R +++ A++ D G + ++ Sbjct: 190 ALLSARLLTASDLDTLGRPRFYADQLVHHGCTRNEYYEFKASAEKPSD----LGCMMENM 245 Query: 262 GCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTP 317 GCKG + + +C+T + G G+ C C E G P Sbjct: 246 GCKGTQAHADCNTRLWNGEGS--CTRGGYACISCTEPGFEEPGHPFHQTPKVAGIP 299 >UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales RepID=Q30QL6_SULDN Length = 293 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 30/281 (10%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ ++W+ A C G T S L +P +E + + YH V+ + + + Sbjct: 3 KKMRILWLSAITCNGNTHSFLN--YPHMEQFLDDF-EFIYHPVI------DSKYSLQEIV 53 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA-- 164 VL+++G+I + G PI + I+ ++ I+ +G+C+ +GG+ Sbjct: 54 SNEIECEVLIIEGAISEEFQR-----GGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRE 108 Query: 165 -----AAGVNPTGAVSLQEVLP-GKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 AG++ +L I+I GCP +P + T+ + I ++D+ Sbjct: 109 SDYKDTAGMHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTL-YAIKKSVLLRVDNFL 167 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFC 278 RP Y +H C R +F+ +FG+ EG Y GC+ P T+G+C+ + + Sbjct: 168 RPKEFYAYTVHNGCTRNEYFEYKVDNHKFGE---LEGCMFYDHGCQAPFTHGSCNKILWN 224 Query: 279 DVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAN--VENQTP 317 +V G PC+GC E + N + P Sbjct: 225 EVNS--KTRAGVPCFGCTEPSFPRDNLFNTKKNMAIPEHLP 263 >UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Proteobacteria RepID=B1Y6B2_LEPCP Length = 313 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 120/279 (43%), Gaps = 24/279 (8%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKY 109 ++W+ C G + ++L A P++E L+ I L +H LS +++ L Sbjct: 4 LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63 Query: 110 KGQYVLVVDGSIPLKD--NGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +L V+GSI G+Y G ++ +R A A A++A+G+C+A+GG+ AA Sbjct: 64 QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123 Query: 168 VNPTGAVSLQ--------------EVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 NP+ LQ G VIN+ GCP +PH T + G P + Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQT-LAALAAGLPLE 182 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 LD +RP + ++H+ C R + + G + ++LGC+GP T C+ Sbjct: 183 LDAIHRPVSHFSTMVHQGCTRNEYHEYNIEDSTPGGKA----CMFFNLGCQGPLTRAVCN 238 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANV 312 T + G G PC+GC + + Sbjct: 239 TDLWN--GVSSKTRAGVPCFGCTSPNFPHDGDLFSTEKI 275 >UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13 Tax=Methanococcales RepID=VHUG_METJA Length = 288 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 94/279 (33%), Gaps = 74/279 (26%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V I C+GC SLL +E VL + + Y ++ + E Sbjct: 6 VKVGMIQLCGCSGCHISLLDLHDKLLE--VLPNLEIVYAPII------------ADPKEI 51 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 +G V +V+G I + + I + E + +IA G+C+A+GG+ G Sbjct: 52 PEGIDVFLVEGGIRNEHDEH-----------LIHEIREKSKIVIAWGTCAAYGGIPGLGN 100 Query: 169 NP-----------------TGAVSLQEVLPGKTVIN-----------IPGCPPNPHNFLA 200 G + +E+ P + + IPGCPP P Sbjct: 101 LYKKEELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIAD 160 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + ++ G+ PKL +++ + C R+ K + CL+ Sbjct: 161 AIIALLN-GEEPKLPT---------KIVCDECPRKKENVFPETFKRTHEGRPDPERCLFE 210 Query: 261 LG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 G C G T C G + G PC GC Sbjct: 211 QGYTCLGFATRAGC---------GAKCPSAGVPCRGCFG 240 >UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5 Tax=Dehalococcoides RepID=D2BHA4_DEHSV Length = 312 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 65/290 (22%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V C GC S+L P ++ VL + + + VL + + + Sbjct: 2 VRVAEEWFAVCGGCELSILDIGEPLLD--VLPNLKIVHMPVLMDHK--LLGQKGDGIKYE 57 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 + ++ G I ++N + + + I+A+G+C+ +GG+ A Sbjct: 58 IPEADLGIITGGIRNEEN-----------RELALEMRKKCKLIVALGTCACFGGIPALAN 106 Query: 169 ---------------------NPTGAVSLQEVLPGKTVIN--------IPGCPPNPHNFL 199 +P G SL ++L ++ +PGCPP P + + Sbjct: 107 LSTTEDMLKQVFSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIV 166 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCER-RPHFDAGRFAK------EFGDEGH 252 + ++ + R + + C R G K +F + Sbjct: 167 ELLTAVLA----------GKTFALPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRY 216 Query: 253 REGWCLYHLG--CKGPETYGNCSTLQFCDVGGVW--PVAIGHPCYGCNEE 298 CL G C GP T C+ + D + PC GC Sbjct: 217 DNMRCLNEQGLFCLGPVTKAGCNRILGADPSEEIPRCIKAYMPCRGCFGP 266 >UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7 Tax=Deltaproteobacteria RepID=A0LP54_SYNFM Length = 324 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 91/281 (32%), Gaps = 66/281 (23%) Query: 56 AQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVL 115 C GC S+L +E +L+ I + + +L + + Sbjct: 10 LSSCAGCEISMLNMGGLFLE--LLKEIRIVHMPLLFDHKYFG--QAGEENFIGIPEADIG 65 Query: 116 VVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTG--- 172 +V G I ++ ++ K ++A+G+C+ GG+ A + Sbjct: 66 IVSGGIRNEEQ-----------LEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDL 114 Query: 173 -------------AVSLQEVLPG------------KTVINIPGCPPNPHNFLATVAHIIT 207 A EV+P + + + GCPP+P +L + + Sbjct: 115 FRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPD-YLGAMFRTLL 173 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCE-RRPHFDAGRFAKEF-------GDEGHREGWCLY 259 G+ P++ + + + C RR + + F ++ E CL Sbjct: 174 DGQWPEMPT---------KSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLL 224 Query: 260 HLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 G C GP T C+ L ++ PC GC Sbjct: 225 EQGLLCMGPVTRAGCAGL---HGNVPMCISARVPCRGCFGP 262 >UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L5Y5_KORCO Length = 319 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 81/295 (27%), Gaps = 77/295 (26%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + + + C GC E+ + + ++E + V VE+ ++ Sbjct: 3 KAKIAFYWCASCGGCEEAQVDLADKLFD--LIEAADIVLWPVAMDFKKEDVEKVGDGSI- 59 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V +++G I ++ + ++ + +IA GSC+ GG+ A Sbjct: 60 -----DVAIINGGIRTSEHE-----------EMVKLLRRKSKLVIAYGSCAHMGGIPALA 103 Query: 168 VNPTGAVSLQEVLPGKTVI---------------------------------------NI 188 T L+ V + I Sbjct: 104 NAYTRESILKYVYEEAPTVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYI 163 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAG---RFAK 245 PGCPP P V+ I++ PPK R + C K Sbjct: 164 PGCPPTPEITWEAVSSILSGNLPPKGHVFGS-----DRALCYECPLNETKPEKVTIDTIK 218 Query: 246 EFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C G C GP T G C L + PC GC Sbjct: 219 RVHQTELDPNKCYLTQGVLCMGPVTRGGCKAL---------CIKGNMPCTGCFGP 264 >UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2 Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA Length = 305 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 92/284 (32%), Gaps = 75/284 (26%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + + C GC SLL + +L+ + I +EY VL + Sbjct: 2 GKATIATAQLSSCVGCHVSLLDLHEKLL-DLLEDAIEIEYCYVLV------------DQK 48 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 E + V V++GSI +++ ++ + E A ++A+G+C+ +GGV Sbjct: 49 EIPEHVNVAVIEGSIRNEED-----------LEVAEELREAADIVVAVGTCACYGGVHGL 97 Query: 167 GV-----------------------NPTGAVS--LQEVLPGKTVINI----PGCPPNPHN 197 P V V P VI++ PGCPP P + Sbjct: 98 ANLYQLDDILEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPES 157 Query: 198 FLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK-EFGDEGHREGW 256 + I + P+L N + E C R K G Sbjct: 158 IAEVITA-ILEDREPELPTTN---------LCEECPREKEDIPIEEIKFRTGQGRPDPDK 207 Query: 257 CLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 CL G C GP T C G + G C GCN Sbjct: 208 CLLEQGYPCMGPATVAGC---------GAACPSRGLSCRGCNGP 242 >UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota RepID=MVHG_METTH Length = 308 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 96/288 (33%), Gaps = 78/288 (27%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 ++ + + C+GC S+ ++ V+E E+ VL + Sbjct: 2 AEKIKIGTMWLGGCSGCHLSIADFHEKIID--VMEHADFEFSPVLMDTKYDE-------- 51 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 V++++G I +N + + E A +I+ G+C+ +GG+ Sbjct: 52 ---IPELDVVIIEGGIVNDEN-----------REFAEELREKAKFVISYGTCAVYGGIPG 97 Query: 166 AG-------------------VNPTGAVSLQEVL-------PGKTVIN----IPGCPPNP 195 N G + ++V P VI+ +PGCPP Sbjct: 98 LRNLWDKDEVIEEAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRS 157 Query: 196 HNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFD--AGRFAK-EFGDEGH 252 V ++T G+ +L + N + E C R + A F K +F Sbjct: 158 DVAAEAVMALLT-GEEIELPETN---------LCEVCPREKPPEGLAMDFIKRQFEVGKP 207 Query: 253 REGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + CL G C GP T C G +I PC GC Sbjct: 208 EDDLCLIPQGLICMGPATVSIC---------GAECPSIAIPCRGCYGP 246 >UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X546_DESRD Length = 334 Score = 151 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 83/296 (28%), Gaps = 72/296 (24%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 +R + A C GC SLL +E + + Y V +E + Sbjct: 2 SRRMSIAMNWAGACGGCDVSLLDTQGKLLE--LTAVADVVYWPVALDYKRSDLEALPEKS 59 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + + +G + + + R+ E ++A G+C+ GG+ Sbjct: 60 V------DIGLFNGVVRTSEQ-----------AEDARRLRERCRVLVAYGACACHGGIPG 102 Query: 166 AGV-------------------NPTGAVSLQE----------------VLPGKTVINI-- 188 NP Q V V+++ Sbjct: 103 LANQSDREEIFRVAYQDTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDY 162 Query: 189 --PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR--FA 244 PGCPP P L + + Y L A + + C R AGR Sbjct: 163 FLPGCPPTPERILDLLGVVQAYNAGDDLPPAGS-ILAPEATLCQECPRAETRRAGRMPRL 221 Query: 245 KEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + C G C GP T G C G + + PC GC Sbjct: 222 YRPHEIVADPETCFLEQGVICMGPFTRGGC---------GSACITVNMPCRGCFGP 268 >UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=D2REQ3_ARCPR Length = 321 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 94/297 (31%), Gaps = 80/297 (26%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYH-EVLSAAFGHQVEENKHNALE 107 + ++ C GC +++ + V+ LE + + + ++ +E ++ Sbjct: 3 LKLAYLLVGGCGGCDMAVVDLSEKLVDA--LEHLEIVFWAPTVADVKYKDLEAMPDQSI- 59 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + ++ G + K+N ++ + I+A G C+A GG+ Sbjct: 60 -----DLGLISGMVRNKENEH-----------LVKVMRQKCKIIVAFGICAALGGIPGMA 103 Query: 168 V-------------------NPTGAVS----------------LQEVLPGKTVI----NI 188 NP + L V P VI + Sbjct: 104 NMHKNEELFENAYIKSPSTDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYV 163 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRP-----HFDAGRF 243 GCPP+ + V +IT PPK G+ + + C R P + + Sbjct: 164 GGCPPHHDHVAKVVEAVITGNLPPKGS-----WITNGKAVCDVCARNPAVKGKTREFVKE 218 Query: 244 AKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 K + E CL + G C GP T G+C G + C GC Sbjct: 219 VKRMHEGIPDEEECLLNQGYLCLGPVTQGDC---------GALCPKVNIRCAGCGGP 266 >UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXG1_OPITP Length = 334 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 78/296 (26%), Gaps = 77/296 (26%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 +P V + C GC E+++ + + E + + + V V+ + Sbjct: 2 PKPKVAFYWCAACGGCEEAIVDFAEDILGVI--EAVDIVFWPVAMDFKKKDVDALPDQGI 59 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 ++G+I + + + + +IA G+C+ GG+ Sbjct: 60 TA------TFLNGAIRTSEQE-----------EMAQLLRRKSQFLIAYGACAHLGGIPGL 102 Query: 167 GVNPTGAVSLQEVLPGKTVIN--------------------------------------- 187 L V I+ Sbjct: 103 ANQFDREQLLSYVYEQTPTIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYY 162 Query: 188 IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEF 247 IPGCPP P + GK P P + C R+P A EF Sbjct: 163 IPGCPPTPK-ITKAAITALLEGKLPPRGSVLAP----DVALCNECARKPSKPATLSFTEF 217 Query: 248 GDE---GHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 CL G C GP T C L A PC GC Sbjct: 218 KRPHLAKIDPDLCLLAQGFVCMGPATRAGCEAL---------CPAGNMPCTGCFGP 264 >UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI5_HYPBU Length = 506 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 16/173 (9%) Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGK----PPKLDDKNRPTFAYGRLIHEHCERRPHF 238 K + +PGCP N + L T+ ++I + K P+LD RP +G +HE C R + Sbjct: 335 KPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYWRPKIIFGGSVHEQCPRNEKY 394 Query: 239 DAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGV-WPVAIGHPCYGCNE 297 AG E G+ G CL+ +GCKGP NC + V GV P G C GC Sbjct: 395 RAGILRSEPGEP---SGACLFSVGCKGPI--SNCPYNKIGWVNGVGGPTRTGGVCIGCTM 449 Query: 298 EGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSAGAIGLLGG-VVGLVAG 349 G + P KP+ +A A +G+L + +AG Sbjct: 450 PGFMDAYEPYY-----KPLPAPVKPEASAATELAAGAAVVGVLAAYGIRKLAG 497 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 17/156 (10%) Query: 7 LIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESL 66 ++ ++RR F+KL A L + A + ++W AQ+C G T SL Sbjct: 1 MLELR-LSRRQFLKLAGTTALLASLDWRKLIRRAFAELETGGISLVWFEAQDCAGDTTSL 59 Query: 67 LRATHPTVENLVLETIS--------LEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 ++AT P + ++ + L +HE + +G + AL YVL+++ Sbjct: 60 IQATEPDIVEVLAGLTNLTPPGAVVLPFHETVMPEWGFGSIAHLLLALGGVYDPYVLILE 119 Query: 119 GSIPLKDN-------GIYCMVAG-EPIVDHIRKAAE 146 G++P ++ + C + E +++ + K Sbjct: 120 GAMPPDEDLTGIKGTNMLCYIGDYETVMESLEKLRR 155 >UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S807_FERPL Length = 299 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 92/295 (31%), Gaps = 80/295 (27%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ + + A C+GC S + + + + +K L Sbjct: 2 KKIRLAFYTASGCSGCILSFFDLEEFFLSSERFSVV-----------WAPMFTNSKLEDL 50 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 EK + + ++GSI L ++ + ++ E + ++A+G+C+ +GGV Sbjct: 51 EKIERIDLTFIEGSIRLSEHE-----------EIVKILREKSEKVVALGTCAVFGGVPGL 99 Query: 167 GVNPTGAVSLQEVLP-----------------------------GKTVIN----IPGCPP 193 + L +V + VI +PGCPP Sbjct: 100 SNFYSDEEILSDVFDSDENAPKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPP 159 Query: 194 NPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHR 253 + + L K D + R + C R+ + A + E Sbjct: 160 SKNQLL----------KIIDFDFEER-WIVEKTSVCSVCPRKVE-EIKVSAVKRAFEK-D 206 Query: 254 EGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGI 306 +G C G C GP T GNC + + PC GC + Sbjct: 207 DGRCFLLQGILCFGPLTPGNC---------EAACIKVNVPCRGCYG-SFPNVRDF 251 >UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFX1_THEYD Length = 318 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 89/297 (29%), Gaps = 78/297 (26%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P + + A C GC +++ + V+ + I + ++ +E ++ Sbjct: 3 KPKLAYYLAGGCGGCDIAVVDISEMLVDVALAVDIVF-WAPTVADVKYKDLEAMPDGSI- 60 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V + G++ ++ + +IA G C+A GG+ Sbjct: 61 -----DVGLFTGNVRNSEHEH-----------IAKVLRNKCKVLIAFGICAACGGIKGLV 104 Query: 168 V-------------------NPTGAVS----------------LQEVLPGKTVIN----I 188 NP + L P V+ I Sbjct: 105 NLHTTDELLDKAYVNTFSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYYI 164 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGR-----F 243 GCPP+ + A +++ G+ P G+ + E C+R P Sbjct: 165 GGCPPHYEHVKAAFTALLS-GQLPPPGSW----ITMGKAVCEVCDRNPVLKGKPKKLATE 219 Query: 244 AKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 K D E CL G C GP T G+C G A PC GC Sbjct: 220 VKRTIDGAPSEDGCLLEEGYLCLGPVTQGDC---------GAKCPAANIPCRGCGGP 267 >UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9R9W3_AMMDK Length = 319 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 84/294 (28%), Gaps = 73/294 (24%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 ++ + A +C GC ++L ++ +++ + + + VE Sbjct: 2 AEKLKIASYWAADCGGCDVAILDTHEKFLD--IVQAADIVFMPIAVDIKEKDVEAFPDGY 59 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + V G+I +N + + ++A GSC+ GGV Sbjct: 60 I------DVCFFHGAIRNSENEH-----------MAKLLRRKSKVLVAFGSCAMMGGVPG 102 Query: 166 AGV-------------------NPTGAVS----------------LQEVLPGKTVINI-- 188 NP + +EV V+++ Sbjct: 103 LANFKDREGILSRVYFESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDVDY 162 Query: 189 --PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 PGCPP H + I+ PPK A + + E C R + Sbjct: 163 FMPGCPPASHQIVNVFQAIVAGNLPPK----GSIVGASTKSVCEECSRIKENKTIKRFYR 218 Query: 247 FGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + CL G C GP T G C G PC GC Sbjct: 219 VHEIIPDPERCLLEQGIPCMGPATRGGC---------GAACPVANQPCRGCYGP 263 >UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I576_DESAP Length = 317 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 79/292 (27%), Gaps = 73/292 (25%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + + A C GC ++L V+ V + + + VE + + Sbjct: 3 KLKLASYWAAACGGCDVAILDIHEKIVD--VAAVADIVFWPIAVDFKYADVEGYEDGFI- 59 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V + G+I + + + + ++A GSC+ GG+ Sbjct: 60 -----DVCLFHGAIRNSEGEH-----------VAKLLRKKSKVMVAFGSCAISGGIPGLA 103 Query: 168 VN-------------------------------PTGAVSLQEVLPGKT----VINI---- 188 P G + L E V+++ Sbjct: 104 NFKQKNDIFYRVYIESQSTQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFM 163 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFG 248 PGCPP A + +I G P + + C R + + Sbjct: 164 PGCPPTSAQIWAVI-QVIASGALPPKGAF---VGCENQTLCNTCTRTKTDKKVKKFYQPY 219 Query: 249 DEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 CL G C GP T C G V+ PC GC Sbjct: 220 QIITDPEKCLLEQGLTCMGPVTRAGC---------GNQCVSANQPCTGCYGP 262 >UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Chlorobiaceae RepID=B4SFA2_PELPB Length = 258 Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 81/281 (28%) Query: 35 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAF 94 +A + +R + C GC L + + ++L Sbjct: 1 MGELIAHQGVSFERLKIASFDFTCCEGCQLQLANREST-----LADFLNLL--------- 46 Query: 95 GHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAI 154 + + + E++ + +++GSI +D V+ + K + A ++A Sbjct: 47 --DIRNFRELSSEQHDDYDIALIEGSISRQDE-----------VERLLKIRQQAKILVAF 93 Query: 155 GSCSAWGGVAAAGV--------------NPTGAVSLQEVLPGKTV-INIPGCPPNPHNFL 199 G+C+ +GG+ + P + ++++ V ++IPGCP + Sbjct: 94 GTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKISDVVKVDLSIPGCPVDKREVE 153 Query: 200 ATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY 259 V ++ G L + C + CL+ Sbjct: 154 RIVVSLVR-GSQITLPKY---------PVCVEC------------------KAQLNTCLF 185 Query: 260 HLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 LG C GP T C+ + PC GC Sbjct: 186 ELGEICLGPITRAGCNAV---------CTTGKTPCLGCRGP 217 >UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=2 Tax=Euryarchaeota RepID=Q0W6J6_UNCMA Length = 305 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 76/286 (26%), Gaps = 82/286 (28%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + V C GC S+L + +L+ I Y VL + Sbjct: 3 KVKVAETWIGACAGCEISVLDTHEALLP--ILDKIEFVYIPVLM-------------DTK 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V +V G + DN + + + ++A+GSC+ +GG Sbjct: 48 HIPKATVGIVSGCVRNSDNLH-----------ELLEMRKNVDILVALGSCACFGGTPGMA 96 Query: 168 VNPT---------------------------------GAVSLQEVLPGKTVINIPGCPPN 194 T A L + + +I PGC P Sbjct: 97 NLYTPEQLLEEVYVTTKSTKNEIQRHPYMDGLPTLLPDAKPLSDYVKVDAMI--PGCGPR 154 Query: 195 PHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHRE 254 P + ++ + + + + C R + + E Sbjct: 155 PAMIAQAILSLLGAAE----------YKLSTKSVCDECAREKSERNLKKILRPFEGTIDE 204 Query: 255 GWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 CL+ G C G T C G + G C GC Sbjct: 205 KKCLFEQGYLCSGSATRAGC---------GAMCPSSGVACRGCFGP 241 >UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4 Tax=Anaeromyxobacter RepID=Q2IH66_ANADE Length = 491 Score = 134 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 82/295 (27%), Gaps = 77/295 (26%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC E+++ +LE + + V + VE Sbjct: 168 KPRVAFYWNASCGGCEEAVVDLGDGFAG--LLERVEVVLWPVATDHKRADVEALPDG--- 222 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 G + V+G++ L + + R A ++A G+C+ GGV G Sbjct: 223 ---GIDLAFVNGAVRLDEQE-----------EWARLLRRKARTVVAFGACAHLGGVVGLG 268 Query: 168 V-------------------NPTGAVS----------------LQEVLPGKTVIN----I 188 NP + L L V++ I Sbjct: 269 NLSEPEALLEAAYRAPPSVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSVDYTI 328 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK--- 245 PGCPP+P + + PP P + E C R+ Sbjct: 329 PGCPPSP-AVVQAALDALLGDAPPPRGAVLAP----DVSLCEDCPRKGSRPERIELHALR 383 Query: 246 EFGDEGHREGWCLYHLG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C G C GP T C V G PC GC Sbjct: 384 RLATSAVDPELCFLAQGLVCMGPATRQGC---------QPGCVEAGMPCRGCFGP 429 >UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI Length = 252 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 77/272 (28%), Gaps = 86/272 (31%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + V C GC L + E + Y + Sbjct: 2 KNKLRVGVFKLSSCDGCQAIFLDLPS------LWEHLDFRYW-------------FLGKS 42 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 K + + V+GS+ ++ + I++ E A ++ IG+C+ GG+ A Sbjct: 43 ENKLEPIDIAFVEGSVSTQEE-----------AEFIKEVREKARLLVTIGACATSGGIQA 91 Query: 166 A------------GVNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYG 209 P L+ P + I GCP NP + L + + Sbjct: 92 LRNFGSLEEFSSVYPKPEFIKVLKRSTPISEHVKVDYEIYGCPINP-HILENFVKALLHS 150 Query: 210 KPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL---YHLGCKGP 266 + P++ + C+ R C+ Y + C GP Sbjct: 151 RRPEIPSY---------PLCMECKLRG------------------NICVMDAYRIPCLGP 183 Query: 267 ETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C G ++G CYGC Sbjct: 184 VVRAGC---------GALCPSVGRGCYGCFGP 206 >UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter RepID=Q39QE2_GEOMG Length = 316 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 94/279 (33%), Gaps = 76/279 (27%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 + W+ +C+GC +++ + VLE+++++ VL+ ++ Sbjct: 6 INLEWL--SDCSGCHVAIVDLHEKIL--AVLESVTIQRCPVLT-------------DVKD 48 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 Y + +V G+I + + + + + IIA GSC+ +GG+A AG Sbjct: 49 YPKAKLGLVSGAIRTEHDRHAAI-----------EMRKSCDLIIAWGSCAVYGGIAGAGN 97 Query: 169 ----------------------NPTGAVSLQE--VLPGKTVINI----PGCPPNPHNFLA 200 PT VS E V P +VI++ PGC P+P Sbjct: 98 VHSRQEIIDAVYIGNKTTATHAPPTKEVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVFD 157 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + ++ + P A G + C R+ ++ + C Sbjct: 158 ALLALL---------EGRSPRTATGESVCARCRRKMEKTEVDRIRKNSEGVPDPDRCFLS 208 Query: 261 LG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 G C G T C G PC GC Sbjct: 209 QGYLCMGSVTLDRC---------MSPCPLNGIPCSGCAG 238 >UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM Length = 300 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 84/278 (30%), Gaps = 73/278 (26%) Query: 59 CTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVD 118 C GC ++L ++ +LE IS+ + +L + + + V +V Sbjct: 14 CAGCEVAILDQGELLLD--ILERISIVHAPILMDSKYRDP--AGDSDVVSIPRADVGIVS 69 Query: 119 GSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP-------- 170 G I + + + E +IA GSC+ GG+ + Sbjct: 70 GGIRTEHG-----------LAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQG 118 Query: 171 -------------------TGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKP 211 ++ EV+P I +PGCPP P + A + G+ Sbjct: 119 VPNLEHGVEDGDFELPPLTARVAAINEVVPVD--IFLPGCPP-PTHLFAAALQAVLEGRS 175 Query: 212 PKLDDKNRPTFAYGRLIHEHC-----ERRPHFDAG-RFAK--EFGDEGHREGWCLYHLG- 262 L + + C +R D G +F + + + CL G Sbjct: 176 FDLPE---------DTVCNECSKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGF 226 Query: 263 -CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEEG 299 C G T C + PC GC Sbjct: 227 FCMGAATRSGCGAR---------CTQVNMPCRGCMGPK 255 >UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUT4_SULAA Length = 249 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 83/269 (30%), Gaps = 83/269 (30%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V C GC S + + E LE S++Y + ++ Sbjct: 1 MRVGIFKFSSCDGCQLSFINLSGELAE---LENFSIDYF-------------LEGQSVNN 44 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 Y+ V+GS+ + ++ I+ E + ++ IG+C+ GGV + Sbjct: 45 YEYFDFSFVEGSVSTTEE-----------IERIKDIRERSKVLVGIGACAVSGGVQSIRN 93 Query: 169 --NPTGAVSL-----------QEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKP 211 N ++ + LP V+ I GCP + + + I GK Sbjct: 94 FRNIDDIKTVYNTVDITKNVLENALPISQVVKVDFEIRGCPVSTD-VVKDFINSILIGKS 152 Query: 212 PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL--YHLGCKGPETY 269 P Y + C+RR CL + C GP T Sbjct: 153 PH---------NYNYPVCLECKRRG------------------NICLLVLNKPCLGPITT 185 Query: 270 GNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C+ L ++ CYGC Sbjct: 186 AGCNAL---------CPSVNRGCYGCFGP 205 >UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A155_THESM Length = 267 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 77/273 (28%), Gaps = 85/273 (31%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 ++ + + C GC ++ ++ L + Sbjct: 8 SEKVKIGFYALTSCYGCQLQFA-----MMDEVLQ----------LLDKANIECWFMLERG 52 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 ++ K + ++GS+ ++ V+ ++K E A +IA+GSC+ GGV + Sbjct: 53 SDEDKEVDIAFIEGSVSTQEE-----------VELVKKIREKAKIVIAVGSCAVHGGVQS 101 Query: 166 -------------------AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 P A +++ + + GCPP +FL + ++ Sbjct: 102 WDKDKEFNELWKTVYGDAHVKFEPKMAEPVEKYIKVDY--KLYGCPPEKKDFLYALGTLL 159 Query: 207 TYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CK 264 P +D + C R L G C Sbjct: 160 IGSWPEDID----------YPVCVECRLRG-----------------NPCLLIEKGEPCL 192 Query: 265 GPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 GP T C A C GC Sbjct: 193 GPLTVAGCDAR---------CPAFNIACIGCRG 216 >UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT65_9GAMM Length = 268 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 85/281 (30%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 + RP + C GC +L+ + + E + + + A G Sbjct: 6 KLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLT--LAEMVDIVHF----AEAGP---- 55 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 L+++ + ++GS+ + + ++K E A +IAIG+C+ Sbjct: 56 -----LDEFADVDIAFIEGSVNTHHD-----------IPRLQKIREKAKYVIAIGACAVA 99 Query: 161 GGVAAAGVNPTGAVSLQE--------------------VLPGKTVIN----IPGCPPNPH 196 GG+ A N T A L E K +N I GCP Sbjct: 100 GGIQALR-NYTNAAELLEWQKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTE 158 Query: 197 NFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGW 256 L + ++ +G P+ +++ C H A ++ Sbjct: 159 QILKAIRQLL-FGVEPE------------KVVDPVCTSCKH------ASVTCVMVAKDEP 199 Query: 257 CLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 CL GP T C G +G CYGC Sbjct: 200 CL------GPVTADGC---------GAICPKLGRGCYGCFG 225 >UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1 Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU Length = 293 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 77/275 (28%), Gaps = 72/275 (26%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V + A C+GCT S+L ++ Sbjct: 2 IDVAFYIAHGCSGCTMSMLDLGER--------------MNDFRMRVAWAAPTLGDGKYDR 47 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 ++G I L ++ V+ +R+ E + ++A G C++ GG+ Sbjct: 48 IPEVDYAFIEGGIGLSEH-----------VEIVRELREKSETLVAFGICASCGGIMGLAN 96 Query: 169 NPTGAVSLQEVL--------------------PGKTVI----NIPGCPPNPHNFLATVAH 204 + L++V P +V+ I GCPP P Sbjct: 97 LHSKEEILEDVFGSAKSSVGDLRIPEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKA 156 Query: 205 IITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG-- 262 I + R G+ + E C R G ++ C G Sbjct: 157 IF---------EGERGWITSGKSVCEFCSRNLSEKFGEVSRFLRVPDKE---CFLKQGIL 204 Query: 263 CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 C GP T G+C PC GC Sbjct: 205 CFGPATQGDC---------MASCPNSNSPCRGCGG 230 >UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella marina EX-H1 RepID=C0QP84_PERMH Length = 249 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 79/267 (29%), Gaps = 78/267 (29%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 V C GC S + + + + E + ++Y + + Sbjct: 2 IEVGIFKFASCDGCQISFFDISE--MLSHLEEKVRIKYF-------------IEGQDRNE 46 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA---- 164 ++ + ++GS+ + + ++K + + ++ IG+CS+ GG+ Sbjct: 47 FERFDISFIEGSVSTPEQE-----------EKVKKIRDVSEYVVTIGACSSSGGIQSVRN 95 Query: 165 ---------AAGVNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKP 211 + P SL+ P I+ I GCP N L + +I KP Sbjct: 96 FSDYKDIVCSVYPKPEMIKSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVILGKKP 155 Query: 212 PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGN 271 + + C+R+ FG C G T Sbjct: 156 ----------YNPEYPVCMECKRKG----NPCVIIFGKP------------CLGSITSAG 189 Query: 272 CSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C G + CYGC Sbjct: 190 C---------GAVCPSYNRGCYGCFGP 207 >UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae RepID=B6YU80_THEON Length = 265 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 74/273 (27%), Gaps = 87/273 (31%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + + + C GC ++ ++ L Sbjct: 3 GKVRIGFYALTSCYGCQLRFA-----MMDEILQ----------LLPNAEIVCWYMLDRDS 47 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA- 165 + + + ++GS+ ++ V+ ++K E A ++A+G+C+ GGV + Sbjct: 48 SEDEPVDIAFIEGSVSTEEE-----------VELVKKIRENAKIVVAVGACATQGGVQSW 96 Query: 166 ------------------AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 P A L+ + I GCPP +F+ + + Sbjct: 97 EKDKSLEELWKAVYGDGKVKFEPKMAEPLENYIKVDYRIY--GCPPEKKDFIYAIGTFLV 154 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC-LYHLG--CK 264 P +D + C + C L G C Sbjct: 155 GSWPEDID----------YPVCLEC------------------RLKGNTCILIEKGEPCL 186 Query: 265 GPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 GP T C + G C GC Sbjct: 187 GPITRAGCDAR---------CPSYGIACIGCRG 210 >UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria RepID=Q2LYD8_SYNAS Length = 253 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 78/271 (28%), Gaps = 86/271 (31%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC + ++ +L I + + + + Sbjct: 7 KPKVAFFDFACCEGCQLQVANLGEALLD--ILGAIDVVEFREVMSE-------------K 51 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 K V +V+GSI E IRK + +A +IA GSC+ GGV Sbjct: 52 WDKNYDVAIVEGSIT-----------DEHAEQRIRKIRDRSAVLIAYGSCATIGGVNGMK 100 Query: 168 VNPT-------------------GAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITY 208 + + +V+ IN GCP + + + Sbjct: 101 NSFVLDEIRQSVYGKDYQLFDSKKTRPIHQVVKVDYFIN--GCPVYHPEVIEVLKCAL-- 156 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGP 266 + P + C E C+Y G C GP Sbjct: 157 --------RGVPYAVPDNPVCSEC------------------KLNENVCMYDRGVACLGP 190 Query: 267 ETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 T C+ W + G+ CYGC Sbjct: 191 WTKAGCN---------SWCINNGNICYGCRG 212 >UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3 Length = 227 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 84/255 (32%), Gaps = 51/255 (20%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 V + C GC SL ++ VL I L Y + ++ A + Sbjct: 4 VAHVQLSSCCGCLVSLTDTYEKLLD--VLGAIDLVYSQTIADA-------------REIP 48 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP 170 +++V+GS+ L D ++ + + A ++A+G+C+A GG+ Sbjct: 49 EADIILVEGSVCLDD---------HHAMEIAQDVGKKAKILVALGACAATGGITRFCRGG 99 Query: 171 TGAVSLQ-EVLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYG 225 + + P V+ IPGCPP+P + + I + P + Sbjct: 100 QMSKPIHSSFSPITEVVKCDLAIPGCPPSPEIIVGLITAAIEGDM-----EYLAPFSEFA 154 Query: 226 RLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWP 285 + E C G E C GC +C T V G P Sbjct: 155 KNNTEAC--------GCDVIEKVVNKSLCMGC----GC----CAASCPTRAIEMVEGR-P 197 Query: 286 VAIGHPCYGCNEEGI 300 + + C C G Sbjct: 198 LILNEVCIKCGCCGF 212 >UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), gamma subunit n=3 Tax=Euryarchaeota RepID=Q0W6U0_UNCMA Length = 306 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 79/280 (28%), Gaps = 74/280 (26%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 + C GC S +L + + Y +L +++ Sbjct: 2 IKLATEPLASCAGCHMS--LLDLHEDLLELLNKVEIVYSPILM-------------DVKE 46 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG- 167 + I + + ++ ++K + A +IA G+C+ +GGV+ Sbjct: 47 PPED----------IDIAIIGGAIRNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSI 96 Query: 168 -----------------------VNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLA 200 N L VI I GCPP FL Sbjct: 97 LHSRDEILNGVYTNRQGTTTNVIPNQDIPDLLYRGYAVGDVIKVDYYITGCPP-KEFFLR 155 Query: 201 TVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYH 260 + + G+ P L + + C+R K + E CL Sbjct: 156 QILLPLIEGRIPDLQK---------KSVCSECDREMVLVKDWKIKRRYEGVPEEKTCLLG 206 Query: 261 LG--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 G C G T+G C L G PC+GC Sbjct: 207 QGYICLGSVTFGRCHAL---------CTHHGIPCHGCGGP 237 >UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI4_EGGLE Length = 261 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 89/261 (34%), Gaps = 58/261 (22%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKH 103 P P V+ +G C GC + A ++ VL I L Y ++ S+ Sbjct: 10 EKPSAPRVVVVGLASCFGCQLQITNAEAHLLD--VLGQIDLRYWQLASSD---------- 57 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + V +++G++ +++ +R E A AIIA+G+C+ G+ Sbjct: 58 ---PMPEDFDVAIIEGAVTTEESEA-----------TVRSLREKAGAIIAVGACATTAGI 103 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIP-GCPPNPHNFLATVAHIITYGKPPKLDDKNR--P 220 A E PG+ +P C + G +D + R P Sbjct: 104 PGMA-----AEGFLE-RPGQVYDRVPSAC--------GDMVAPRAVGAVIDVDFEVRACP 149 Query: 221 TFAYGRLIHEHCERRPHFDAGRF--AKEFGDEGHREGWCLYHLG--CKGPETYGNCSTLQ 276 +Y + + +R + + GD E C + G C G T C Sbjct: 150 IDSYDFI--DVLQRALYGSNKTYPSRTMCGDCKRNETSCFFGKGQLCLGLVTTAGC---- 203 Query: 277 FCDVGGVWPVAIGHPCYGCNE 297 G V +G PC GC Sbjct: 204 -----GAKCVNLGRPCNGCRG 219 >UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL1_HALUD Length = 266 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 89/278 (32%), Gaps = 90/278 (32%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 +T +P V + C G ++ +E+ +L+ + Sbjct: 1 MTGEDKPRVAFFDFTGCEGDQLQVIN-----LEDRLLDL------------VEVVEVVSF 43 Query: 103 HNALEKYKGQY-VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 A+ ++ +Y + V+G + + + + A ++A+GSC+A+G Sbjct: 44 REAMTEHSDEYEIAFVEGGVATAHDER-----------RLTDIRDNADVVVALGSCAAFG 92 Query: 162 GVAAAGVN--------------------PTGAVSLQEVLPGKTVINIPGCPPNPHNFLAT 201 G+ A + A +++V+ + IPGCP + FL Sbjct: 93 GINALRNHQDFETVKERVYGEDADSITSYPIARPIEDVIEVEY--EIPGCPIDREEFLGA 150 Query: 202 VAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHL 261 V ++ G P + + + C E C + Sbjct: 151 VTALVN-GAEPSIPNY---------PVCLEC------------------KFAENTCAFER 182 Query: 262 G--CKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 G C GP T G CS V+ G C+GC Sbjct: 183 GETCLGPITRGGCSAT---------CVSAGTHCWGCRG 211 >UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NJF2_9DELT Length = 366 Score = 121 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 83/331 (25%), Gaps = 112/331 (33%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P + A C GC +++ +E + L + L +E + Sbjct: 4 KPKLAIYWAAACGGCEIAVVNLHEKILE--LDAAFELFFCPCLLDTKKGDIEALADGEIA 61 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V + +G+I +N + + + +IA GSC+ G + Sbjct: 62 ------VTLFNGAIRTSENE-----------EMAQLLRRKSQTLIAFGSCAVEGCIPGLA 104 Query: 168 V-------------------NPTGAVS------------LQEVLPGKTVIN--------I 188 NP G + L E + I Sbjct: 105 NLYDRTAIFNTVYLDNPSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVAVDFFI 164 Query: 189 PGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERR-PHFDAGRFAKE- 246 PGCPP P V ++ PP A + C R+ RF + Sbjct: 165 PGCPPEPPRIWQAVESLLNGDPPPPDQVLGAGKLA----VCHECPRKIEEKKIKRFYRNH 220 Query: 247 -------------------------------------FGDEGHREGWCLYHLG--CKGPE 267 GD + CL G C G Sbjct: 221 QMISDHRVPPAALIAAASPTATRTPVREPAPSSQDAVPGDRFPDKESCLLEQGLLCMGIA 280 Query: 268 TYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 T C G +G PC GC Sbjct: 281 TREGC---------GALCPQVGMPCTGCYGP 302 >UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria RepID=Q2J4E9_FRASC Length = 278 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 81/270 (30%), Gaps = 81/270 (30%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 RP + C GC +LL + + I + Y S+A Sbjct: 17 RPRLAVWKFASCDGCQLTLLDCEDELLS--LAGEIDVSYFLEASSATVDGPY-------- 66 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +V+GS+ + + V+ I + + ++ IG+C+ GG+ A Sbjct: 67 -----DLSLVEGSVTTEQD-----------VERIHQVRAASRRLVTIGACATAGGIQALR 110 Query: 168 V-------------NPTGAVSLQEVLPGKTVINI----PGCPPNPHNFLATVAHIITYGK 210 P +L P T + + GCP NP L ++ + Sbjct: 111 NFADVGDFLAAVYATPAYVSTLATSTPISTHVRVDFELQGCPINPRQLLEVISAFLA--- 167 Query: 211 PPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGPET 268 + RP + + C+RR + G C GP T Sbjct: 168 ------RRRPNIS-SSAVCTECKRRGT-----------------VCVMVAHGTPCLGPVT 203 Query: 269 YGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 + C G A CYGC Sbjct: 204 HAGC---------GAICPAYHRGCYGCFGP 224 >UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI Length = 251 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 82/271 (30%), Gaps = 87/271 (32%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P V + C GC ++L E +LE I + + G + Sbjct: 2 KPKVAFFEFTSCEGCQLTVLDTLQRHPE--LLEVIEIVQFREAMSERGEDYQ-------- 51 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + ++GS + IR+ E A ++A+G+C+ GG+ A Sbjct: 52 ------IAFIEGSCTRPSDEA-----------KIREIREQAQIVVALGACAHLGGINAIR 94 Query: 168 V-NPTG------------------AVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITY 208 P A L V+ VI PGCP + F V H++ Sbjct: 95 NRMPLEQTREYVYGDKKDWFETYPARPLSAVIEVDAVI--PGCPIDRKEFATAVTHLLQ- 151 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGP 266 G+ P + D P D E C++ G C GP Sbjct: 152 GRKPAIPDY--PLCI-------------------------DCKLTENVCMFLRGQTCLGP 184 Query: 267 ETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 T C + A G C GC Sbjct: 185 VTRAGCEAI---------CPAQGQGCEGCRG 206 >UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q1_KORCO Length = 258 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 84/273 (30%), Gaps = 84/273 (30%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + + C G ++L +E+++L+ +SL E ++ Sbjct: 2 GKLRAAFYSLTGCQGEYLTIL-----GMEDILLDLLSLV----------DIAEFKLASSK 46 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 E + V+GS+ + + +++I++ + ++A+G C+ WGG+ A+ Sbjct: 47 EYDGKVDIAFVEGSVSTERD-----------LEYIKRIRGNSKILVALGDCAVWGGIQAS 95 Query: 167 ----------------GVNPTGAVSLQEVLPGKTVIN--IPGCPPNPHNFLATVAHIITY 208 N G + + + ++ I GCP F + ++ Sbjct: 96 TSGQDPKELMRSVYKTEKNLYGFLGEHKGISEVVPVDYEIQGCPIEGKEFARVLIDLVR- 154 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY---HLGCKG 265 P+L D + C RE CL L C G Sbjct: 155 DVKPELPDY---------PVCIEC------------------KVREIPCLIVERGLPCLG 187 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 P T C + C GC Sbjct: 188 PITVAGCDAR---------CPSYNTACIGCRGP 211 >UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae RepID=B6YSK0_THEON Length = 246 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 80/270 (29%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + + +C GC ++L + + + + E + +L Sbjct: 3 DKLKLAVFELTDCGGCALNIL-----FLYEKLFDLLEF----------YEITEFHMATSL 47 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + V +V G++ + + + +++A + +IA+G+C+ G V A+ Sbjct: 48 SEGSHYDVALVTGTVSSQRD-----------LALLKEARNHSDYLIALGTCATHGSVQAS 96 Query: 167 ------------GVNPTGAVSLQEVLPGKTVINI----PGCPPNPHNFLATVAHIITYGK 210 + + + P + + PGCP + + + I + Sbjct: 97 VEGSIREKLKRVYGDEGNPMRALDSKPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGIE 156 Query: 211 PPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGPET 268 P K D + C+ + L G C GP T Sbjct: 157 PVKKD----------YPVCVECKLNEY-----------------ECVLVKKGLPCLGPIT 189 Query: 269 YGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 YG C+ + G C GC Sbjct: 190 YGGCN---------AACIRSGLGCIGCRGP 210 >UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10 Tax=Proteobacteria RepID=B5EQ53_ACIF5 Length = 265 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 82/272 (30%), Gaps = 81/272 (29%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 +P + C GC + L + + E + + + A G Sbjct: 3 AAKPRLAVHKFSSCDGCQLAFLNLGEDLL--RLAELVEIVHF----AEAGP--------- 47 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 ++ + V+GS+ ++ + I+K + + +I+IG+C+ GG+ A Sbjct: 48 VDPDAVVDIAFVEGSVSTPEDE-----------ERIQKIRKNSRHLISIGACATAGGLQA 96 Query: 166 AGVNPTGAVSLQEVLPGKTVI-----------NIP------GCPPNPHNFLATVAHIITY 208 G + E+ I ++P GCP N L V ++ + Sbjct: 97 LRNLADGPGWIAEIYAQPEHIHSLATSTPIAAHVPVDLELWGCPVNGRQVLGAVRALL-F 155 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGP 266 P L+ + C+R H+ L G C GP Sbjct: 156 EVVPALEK---------DKVCLECKR-----------------HQAVCVLVAKGLPCMGP 189 Query: 267 ETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 T C G G CY C Sbjct: 190 VTLTGC---------GALCPRFGRDCYACYGP 212 >UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM Length = 282 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 77/273 (28%), Gaps = 82/273 (30%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ V C G ++L L+ E + A+ Sbjct: 10 KKLRVGIYSFTGCAGDQLAILN----DTTVLLGLAQRAEICSFIMASSQES--------- 56 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 ++ + +V+GSI + + K + + A++A+G+C+ WGG+ A Sbjct: 57 DQEGRLDLAIVEGSICSEQERTA-----------LEKLRQRSDALMALGTCAVWGGLPAM 105 Query: 167 --------------GVNPTGAVSLQEVLPGKTVIN----IPGCPPNPHNFLATVAHIITY 208 + T +E P + + GCP F V I+ Sbjct: 106 NAKTIPIHTMKEQVYGDSTVFPGAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNG 165 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG---CKG 265 +P + D + C E CL C G Sbjct: 166 VRPVQTDA----------SVCSEC------------------RIAENRCLVQAERRVCCG 197 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 P T C + G PCYGC Sbjct: 198 PITLAGCKAR---------CIQYGQPCYGCRGP 221 >UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms RepID=A3DKH2_STAMF Length = 165 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 35/159 (22%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 P +I C GC +L A P + E Sbjct: 31 PWLIHFNTGACNGCDIEVLAAITPL----------------------YDPERFGIKLAPS 68 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 + +LVV G++ K + + + ++A+G+C+ GGV Sbjct: 69 IRHADILVVTGAVTKKAAER---------LKRLYEQMPDPKFVVAVGACAISGGVF--HN 117 Query: 169 NPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 + + +V+P I +PGCPP P L + ++ Sbjct: 118 SYSVLAGTDKVIPVD--IYVPGCPPRPEAILDGIVKLLK 154 >UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED7_9FIRM Length = 254 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 83/273 (30%), Gaps = 84/273 (30%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P V C+GC L P + +L+ + + A Sbjct: 2 AELPKVAIFKFASCSGCQLEFLNL-EPVLLDLLGLVDLTHF---VMARRE---------- 47 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 K + V+GSI ++ ++ +++A ++AIG+C+ GG+ + Sbjct: 48 -NKPGPYDIGFVEGSIVNPED-----------IERLKQARRDCGLLVAIGACACHGGLQS 95 Query: 166 AGV-------------NPTGAVSLQEVLPGKTVINI----PGCPPNPHNFLATVAHIITY 208 +P SL + P ++I GCP N + + V + Sbjct: 96 LNNGTPQREVEARVYEHPAEVSSL-KSYPVDEYVDIDAKLSGCPINKNELVEFVKSALL- 153 Query: 209 GKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCL---YHLGCKG 265 G P++ RP H C + E CL C G Sbjct: 154 GVTPRI----RP--------HCVC---------------VECKLSENVCLTVSEKTPCMG 186 Query: 266 PETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 P T C G A C GC+ Sbjct: 187 PVTRAGC---------GALCPARSTACTGCHGP 210 >UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota RepID=FRHG_METBF Length = 259 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 60/286 (20%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + + + CTGC SL + + ++ + L Y L + Sbjct: 3 NKIKIGHVHMSGCTGCLVSLAD-NNLGLIKILDDYADLVYCLTL-------------ADV 48 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 V +V+GS+ L+D+ V+ I++ + + ++A+GSC+ +G + Sbjct: 49 RHIPEMDVALVEGSVCLQDHES---------VEDIKETRKKSKIVVALGSCACYGNITRF 99 Query: 164 ----AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNF--LATVAHIITYGKPPKLD-- 215 + + +++ + IPGCPP+P +A +A+++ G + + Sbjct: 100 SRGGQHNQPQHESYLPIGDLIDVD--VYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELA 157 Query: 216 -DKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCST 274 +P + C +D +G C+ GC +C Sbjct: 158 GKYLKPLMDLAKRGTSGCFCDLMYD-----------VINQGLCM---GCG--TCAASCPV 201 Query: 275 LQFC------DVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVEN 314 + G CYG I + N+ Sbjct: 202 HAITLEFGKPQGERDLCIKCGS-CYGACPRSFFNLDVIPEFENINE 246 >UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN9_HALUD Length = 183 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 35/164 (21%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + P ++ + C GC L A P + VE Sbjct: 7 WARNRSPWILHMNCGSCNGCDIETLDALMPR----------------------YDVERFG 44 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + + VLV G + + P ++ I + +IA GSC+A GG Sbjct: 45 IQQKDTPRHADVLVATGPVTKQMA---------PRLERIYEQMPEPKLVIAAGSCAATGG 95 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 V N + +V+P + +PGCP +P + + ++ Sbjct: 96 VFQDCYNCHE--GIDDVIPVD--MYVPGCPISPETLIDGIVALL 135 >UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5 Length = 274 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 35/175 (20%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 ++ A++ + V I C GC + A P + Sbjct: 13 ANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITP------------MWDP--- 57 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 E + + +L+ G + + Y ++ +AA + Sbjct: 58 -------ERFGFKLVANPRHADILICSGPVTRQM--YYPLL-------RAYEAAPDPKIV 101 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 +A G+C + GG+ + G + +++P + IPGCPP+P + + + + Sbjct: 102 VAFGACGSSGGIFHDAYSVWG--GIDKIIPVD--VYIPGCPPHPASVIYGLGMAL 152 >UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM Length = 184 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 56/205 (27%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKH 103 T + + C GC SLL ++ + + + Y V Sbjct: 4 TASNKVRLATAWFGGCAGCHMSLLDLDERLIDVV--GLVDIVYSPV-------------A 48 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + +G V +V+G+ +N V + E + +IA G C+ G V Sbjct: 49 DIKVFPEGVDVTLVEGACCNDEN-----------VHLAHEVRERSKIVIAFGDCAVTGNV 97 Query: 164 AAAGVN-------------------PTGAVS------LQEVLPGKTVINI----PGCPPN 194 + PT + + +VLP VI + PGCPP+ Sbjct: 98 PSMRNRLDRDQMINSVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPD 157 Query: 195 PHNFLATVAHIITYGKPPKLDDKNR 219 P A + ++ G+P L ++ R Sbjct: 158 PERIWAAIVALLK-GEPVLLPEEMR 181 >UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter RepID=B5EBV9_GEOBB Length = 251 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 81/274 (29%), Gaps = 86/274 (31%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVE-NLVLETISLEYHEVLSAAFGHQVEENKHNA 105 RP + G C+GC +LL + + +S A Sbjct: 2 NRPRLAIAGLTACSGCQLTLLNCEDELAQVAARFDLVSFP-----MAES----------- 45 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 +E +V+G++ + + ++ + + ++A+G+C+ +GGVAA Sbjct: 46 VEGGAPFDAAIVEGAVSTPGD-----------LANLFRLRNSSRLLVALGTCAIFGGVAA 94 Query: 166 AGVNPT------------GAVSLQEVLP------GKTVINIPGCPPNPHNFLATVAHIIT 207 + G +++ P +I GCPP +A + ++ Sbjct: 95 MNNGVSTREELVAAVYGDGEKTVESFAPAPLTNFVSVDFSITGCPPEKQEVMALLCALLN 154 Query: 208 YGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLY---HLGCK 264 G P L + C RE CL C Sbjct: 155 -GTLPPLATY---------PVCTEC------------------RSRENLCLLLERKELCL 186 Query: 265 GPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 GP G C+ A G C GC Sbjct: 187 GPIIQGGCNAR---------CPATGIVCEGCRGP 211 >UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO Length = 198 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 35/181 (19%) Query: 25 LAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISL 84 + L + ESV R IW C ++ P + Sbjct: 1 MGLEEKLPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGM--- 57 Query: 85 EYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA 144 + +++V G + K P+V + Sbjct: 58 ------------------ERFSATPRQADLMIVAGRVSNKMA---------PVVRQVYDQ 90 Query: 145 AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAH 204 +I++G C++ GG+ N + ++P I +PGCPP P L + Sbjct: 91 MPNPKWVISMGVCASSGGMF---NNYAIVQGVDHIIPVD--IYLPGCPPRPEMLLNAIIE 145 Query: 205 I 205 + Sbjct: 146 L 146 >UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN Length = 433 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 56/199 (28%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 ++ + C GC S L +E +LE + L ++ Sbjct: 255 KKKLKLATCSLAGCFGCHMSFLDMDERLIE--LLERVELSRSP-------------LNDI 299 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + +++G++ +N + +R E IIA+GSC+ GGV + Sbjct: 300 KTCAPDCDLGLIEGAVCNTEN-----------IAVLRHFRESCKIIIAVGSCAINGGVPS 348 Query: 166 AGVN----------PTGAVS---------------LQEVLPGKTVINI----PGCPPNPH 196 N + L++V P VI + PGCPP Sbjct: 349 LRNNIDVKDCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPAD 408 Query: 197 NFLATVAHIITYGKPPKLD 215 F + + + GK P+L Sbjct: 409 AFWK-ILNDLLDGKEPELP 426 >UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular organisms RepID=A9KS72_CLOPH Length = 144 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 35/162 (21%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P +I C GC +L P + I+ Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINT--------------------- 43 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 K +L++ GS+ + P+V I + ++A+G C+ GG+ A Sbjct: 44 -GNPKHADILLITGSVNEQ---------NIPVVKQIYEQMAEPKIVVAVGICANSGGIFA 93 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 N +G + +VLP + +PGC P + V + Sbjct: 94 ECYNVSG--GVDKVLPVD--VYVPGCAARPEAIIDGVVKGLA 131 >UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus RepID=FRHG_METVO Length = 243 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 89/270 (32%), Gaps = 50/270 (18%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 + I CTGC SL ++ +L ++ L Y L+ E + +E+ Sbjct: 2 VKIAHIHMSGCTGCLISLTDTYEKLLD--ILGSVELVYALTLTGEKTEITETDDKILIER 59 Query: 109 --YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 G + +V+GS+ L D + D + +++A+G+C+A GGV Sbjct: 60 DIPGGIDIALVEGSVCLDD--------HHSMDDILTTRKNSKKSLVALGACAASGGVTRF 111 Query: 164 ----AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 + + V + +V+ + +PGCPP+ + + + + + Sbjct: 112 RRVGQMSQPSHASFVPIGDVIKVD--LALPGCPPSTESIVKLLTAALEGDM-----EYLE 164 Query: 220 PTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFC- 278 P + + C G + E + C+ GC C Sbjct: 165 PFAEIAKYGKDAC--------GCDVIK---EVINKSLCM---GCG--TCAAACQVNAIDM 208 Query: 279 -----DVGGVWPVAIGHPCYG-CNEEGIGF 302 ++ + + G C C Sbjct: 209 VEAKPNINSEFCIKCGI-CSAQCPRVRFPE 237 >UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3 Tax=cellular organisms RepID=B6YT72_THEON Length = 266 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 44/183 (24%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 ++ + V + + C GC +L P + E Sbjct: 1 MSGLKSVWVFHVDSGSCNGCDIEILDVLTP----------------------YYDAERLG 38 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + + L+V G PL Y + A ++AIG+C++ GG Sbjct: 39 IKLVPSPRHADALLVSG--PLTRQTYYAVKAAYEA------MPPKPRIVVAIGTCASSGG 90 Query: 163 VAAAG---VNPTGAVSLQEVLPG-----------KTVINIPGCPPNPHNFLATVAHIITY 208 + G NP + G K + IPGCPP+P L +A ++ Sbjct: 91 IFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGKKPDMYIPGCPPSPEEILYGLAQLLGL 150 Query: 209 GKP 211 + Sbjct: 151 KEK 153 >UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular organisms RepID=B2A054_OPITP Length = 338 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 35/160 (21%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + P +I A C GC L P + L I+ Sbjct: 6 KSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINT---------------------- 43 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 K + +V G++ + + ++ +I ++AIG C++ GG+ Sbjct: 44 GNPKHADIFLVTGAVNEQ---------SKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRD 94 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 N G + V+P + +PGC P + V + Sbjct: 95 CYNIAG--GVDRVIPVD--VYVPGCAARPEAIIDGVVQAL 130 >UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA Length = 135 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 33/161 (20%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P V A C GC L+ + P + +E Sbjct: 5 KRSPWVYHAHAGGCVGCDIELVASMGPR----------------------YDLERLGVRL 42 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + VL+V G +PL +P ++ + +IAIG+C GV Sbjct: 43 VPSPRYADVLLVTGPVPLH---------TKPFLERVYAQTPEPKRVIAIGACGCSCGVFI 93 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 N + A + +++P + IPGCPP P + + ++ Sbjct: 94 DDENYSIAGPVDKIIPVD--VKIPGCPPKPEAIMEGIIKVL 132 >UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC56_9ZZZZ Length = 182 Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 36/184 (19%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 + + + R +W+ C+ A G+ + Sbjct: 33 LVKKLITWGRKNSLWVVHLTTGCCSPEFAAL----------------------AGAGYDM 70 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCS 158 E + + +L+++G + K +V +IA+G+C+ Sbjct: 71 ERFGPLVMAAMRQCDILIIEGQVADKMAE---------VVKRTYDQMPDPKYVIAVGNCA 121 Query: 159 AWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 GG + + + + +++P + +PGCPP P +++ + + T LD + Sbjct: 122 ISGGF--YWDSYSMVMGIDKIIPVD--VYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRE- 176 Query: 219 RPTF 222 RP Sbjct: 177 RPLL 180 >UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY Length = 248 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 69/269 (25%), Gaps = 85/269 (31%) Query: 49 PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEK 108 + C GC+ L + +E + G E Sbjct: 1 MNIGIFSLSCCEGCSVQFLNLENEILE--------------ILKYMGINNFRLAKEINEW 46 Query: 109 YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGV 168 + V+G+ +D I + K + + ++A+G+C+A GGV A Sbjct: 47 PVE--IAFVEGTPTNRDEII-----------KLLKIRKYSKILVALGTCAATGGVPAIVN 93 Query: 169 N-----------------PTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKP 211 P A L+ + ++ GCP + + ++ Sbjct: 94 TLEKKEAMKIYNGVPPKIPIDAKQLKYYVDVDYILY--GCPFSKEELKELITSVLL---- 147 Query: 212 PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLG--CKGPETY 269 + + C RE CL G C GP T Sbjct: 148 ------GKGFRNKRYSVCVECT------------------LRENGCLLEEGYLCMGPVTR 183 Query: 270 GNCSTLQFCDVGGVWPVAIGHPCYGCNEE 298 C + + C GC Sbjct: 184 AGCKAI---------CPSNNTQCLGCRGP 203 >UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI Length = 180 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 54/204 (26%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 ++ + V C+GC S L +E ++E + + Y ++ Sbjct: 1 MSTQPKITVATAWLDGCSGCHMSFLDLDERLIE--LVEHVEIVYSPLV------------ 46 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + E V +++GSI +D+ ++ R E ++++G C+ G Sbjct: 47 -DTKELPARVDVGILEGSISSEDD-----------LEKARLFRERCTRLVSLGDCAVTGN 94 Query: 163 VAAAGVNPTGAVSLQEVL--------------------PGKTV-------INIPGCPPNP 195 V A + A P K V + +PGCPP+ Sbjct: 95 VPAMRNHFKLADVFDRAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPPSA 154 Query: 196 HNFLATVAHIITYGKPPKLDDKNR 219 ++ +I G+ P + R Sbjct: 155 DAIWHVLSELIA-GRMPDPNAVTR 177 >UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria RepID=B8G3U7_CHLAD Length = 177 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 57/198 (28%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 R + I C+GC SLL ++ ++E AA V + Sbjct: 3 RIRIATIWLGGCSGCHMSLL-----DLDEWLIEL----------AAQADLVYSPIADVKR 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V +++G+I ++ ++ A + I++ G C+ G V A Sbjct: 48 FPSHVDVTLIEGAIANNEH-----------LELAHIARRNSKIIVSFGDCAVSGNVTALR 96 Query: 168 V-----------------NPTGAVS---------LQEVLPGKTVI----NIPGCPPNPHN 197 +P G + L +V+P VI + GCPP+ Sbjct: 97 NPLGSPEQLLQQVYIEHSDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPR 156 Query: 198 FLATVAHIITYGKPPKLD 215 + + G+ P++D Sbjct: 157 I-RALLEALLTGRKPEVD 173 >UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota RepID=Y516_METJA Length = 148 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 36/167 (21%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 M + + + V + C GC ++ P + + Sbjct: 1 MMKELFRKRSIHVCVVNTGGCNGCDIEIVACLAPR----------------------YDI 38 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCS 158 E+ + VL+V G + L+ + + ++A+G+C+ Sbjct: 39 EQYGIYVHNNPREADVLLVTGPVTLQWAERLKEIYEKT---------PEPKIVVAVGACA 89 Query: 159 AWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG+ G + +V+P IPGCPP P + T+ + Sbjct: 90 LSGGIFKEG---HVVGGVDKVIPVDA--KIPGCPPRPSEIIETILKV 131 >UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C420D3 Length = 319 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 81/283 (28%), Gaps = 55/283 (19%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 E +P + +I CTG SL + L+ + + + Y L Sbjct: 83 EVEKVADKPKIGYIHMSGCTGDGMSLTENYDI-LSTLLTDMVDIVYGTTLV--------- 132 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 L + + +V+GS+ L+D + + + + E A + A GSC+ Sbjct: 133 ----DLWEMPEMDLALVEGSVCLQDE--------HSVKE-LMEVREKAGLVCAFGSCAMT 179 Query: 161 GGV-------AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 G A V + +++ I PGCP +P V +I Sbjct: 180 GCFTRYARGGQLAQPKHESFVPISDLVKVDCAI--PGCPASPEIIAKVVVALING----D 233 Query: 214 LDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCS 273 +D + C+ + + + C GC G C Sbjct: 234 MDYLQPMLDMAACNLACGCDLQ------------TNVVSKALCC----GC-GTCVLA-CP 275 Query: 274 TLQFCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQT 316 T V G C C + ++ Sbjct: 276 TRALEMVEGRPSHNKNR-CIKCGACTTHCPRTWFPAEQIKKDL 317 >UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus RepID=B5YB68_DICT6 Length = 180 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 57/201 (28%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + V + + C+GC S L ++ ++E I+ G ++ L Sbjct: 2 GKIKVASVWCEGCSGCHMSFL-----DMDERLVELIN----------KGLEINATPITDL 46 Query: 107 EKY-KGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + +G + +++G++ + + ++ E I+A+G C+ +GG+ Sbjct: 47 KIPDEGTDIGIIEGAVATDHHE-----------EEVKMMRERCKIIVALGDCAVFGGIPT 95 Query: 166 AGV-------------------------NPTGAVSLQEVLPGKTVIN----IPGCPPNPH 196 +P L + VI +PGCPP+ Sbjct: 96 MRNYIPREELLERGYITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSAD 155 Query: 197 NFLATVAHIITYGKPPKLDDK 217 + ++ G+ PKL+ + Sbjct: 156 AIYYVLKEVL-EGRIPKLEGE 175 >UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOB1_THEYD Length = 199 Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 39/209 (18%) Query: 38 EMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQ 97 + + + R +W C ++ AA + Sbjct: 29 TTLDKIASWGRCSSLWPLTFGLACCAIEMMAT----------------------AASHYD 66 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 ++ + V+++ G++ K P++ ++ +IA+GSC Sbjct: 67 LDRFGIIMRATPRQADVMIIAGTVTKKMA---------PVIVNLYHQMPEPRYVIAMGSC 117 Query: 158 SAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDK 217 + GG+ + + E+LP + IPGCPP P + + + + K + Sbjct: 118 ACSGGIF---NTYSTVQGVDEILPVD--VYIPGCPPRPEALIEGLLKL---QEKIKTEPH 169 Query: 218 NRPTFAYGRLIHEHCERRPHFDAGRFAKE 246 + G + + +RR +++ R K+ Sbjct: 170 KKTGCLSGVCLIDKSQRRCSYESCRDNKK 198 >UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13 Tax=cellular organisms RepID=B6YU96_THEON Length = 175 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 41/174 (23%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P V + + C GC ++ A P + E Sbjct: 34 GRSPWVFHVNSGSCNGCDIEIIAALTPR----------------------YDAERFGVKL 71 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + VL+V G + + V + + +IA+GSC G V Sbjct: 72 VGSPRHADVLLVTGPVTDQSLER---------VKLVYEQTPDPKIVIAVGSCPTGGSVF- 121 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII------TYGKPPK 213 +P L ++P + +PGCPP P L V + G+ P+ Sbjct: 122 -YESPFTNAPLSNIIPVD--VYVPGCPPRPEAILYGVVLALEKLAKILKGEVPE 172 >UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria RepID=Q3M430_ANAVT Length = 181 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 69/210 (32%), Gaps = 63/210 (30%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 R + + C+GC S L ++ +++ AA V + E Sbjct: 3 RLKLATVWLGGCSGCHMSFL-----DLDEWLIDL----------AAQADVVFSPFADIKE 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 +G V++V+G+I +++ I+ E + +I+ G C+ G V A Sbjct: 48 YPEGVDVVLVEGAIANEEHLT-----------TIKIVRERSQILISFGDCAVTGNVTALR 96 Query: 168 V-------------------NP-------------TGAVSLQEVLPGKTVINIPGCPPNP 195 NP + ++P I +PGCPP+ Sbjct: 97 NPLGSAEPVLQRCYIQAVDINPQIPQEPGIVPPLLDRVTPVHSIVPVD--IYLPGCPPSA 154 Query: 196 HNFLATVAHIITYGKPPKLDDKNRPTFAYG 225 A + + GK P L R +G Sbjct: 155 TRIRAAL-EPLLQGKTPHL--SGREFIKFG 181 >UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT Length = 179 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 58/200 (29%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 + V + C GC S L ++ + + + + + ++ + Sbjct: 3 KAKVATFWLEACAGCHMSFLDLDERLID--LFQNVEILFSPIV--------------DAK 46 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 V V+ G + V+ +K E ++A G C+ +GG+ Sbjct: 47 DIPNIDVGVLSGG-----------LGNVEEVELAKKMRERCKYLVAWGDCAVFGGINCMR 95 Query: 168 V-------------------NPTGAVSLQEVLPGKTV-----------INIPGCPPNPHN 197 NP G V +++ + +PGCPP+ Sbjct: 96 NFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADT 155 Query: 198 FLATVAHIITYGKPPKLDDK 217 ++ G+ PK+ + Sbjct: 156 IYYVFKELLA-GRVPKVPSE 174 >UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria RepID=HOXY_RALEH Length = 209 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 59/216 (27%) Query: 33 SKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSA 92 + A + + V IG C GCT S L + +LE ++L Sbjct: 15 PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLP--LLEKVTL-------- 64 Query: 93 AFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAII 152 + + + + + V+G + ++N ++ + E +I Sbjct: 65 -----LRSSLTDIKRIPERCAIGFVEGGVSSEEN-----------IETLEHFRENCDILI 108 Query: 153 AIGSCSAWGGVAAAGV----------------------------NPTGAVSLQEVLPGKT 184 ++G+C+ WGGV A +P +V P Sbjct: 109 SVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHE 168 Query: 185 VIN----IPGCPPNPHNFLATVAHIITYGKPPKLDD 216 V+ IPGCPP+ + ++ G+P L Sbjct: 169 VVKMDYFIPGCPPDGDAIFKVLDDLVN-GRPFDLPS 203 >UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4 Tax=Proteobacteria RepID=Q21RP8_RHOFD Length = 188 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 59/207 (28%) Query: 39 MAESVT-NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQ 97 MA +++ P++ V + C GC S L + ++E I + + Sbjct: 2 MAPAMSPTPRKLKVATVSLAGCFGCHMSFLDIDERLFD--LIEHIEFDRSPL-------- 51 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 +++ + +++G + +N V +R+ ++A+G+C Sbjct: 52 ------TDIKQVGACDIGLIEGGLCNAEN-----------VQVLREFRAHCKTLVAVGAC 94 Query: 158 SAWGGVAAAGVN--------------------------PTGAVSLQEVLPGKTVINI--- 188 + GG+ A + P + L +V P + V+++ Sbjct: 95 AITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGGAIPNDPELPLLLNKVHPIREVVHVDYS 154 Query: 189 -PGCPPNPHNFLATVAHIITYGKPPKL 214 PGCPP+ F ++ ++ G+ P L Sbjct: 155 LPGCPPSADAFWHFLSDLMA-GRTPHL 180 >UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TP47_9BURK Length = 303 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 238 FDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297 F G + + DE R G+CLY +GCKGP TY CST+++ + G +P+ GH C GC+E Sbjct: 180 FRRGPVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRW-NRGTSFPIQAGHGCIGCSE 238 Query: 298 EGIGFHKGIHQLANVENQT 316 EG I+ +Q Sbjct: 239 EGFWDKGSIYDRLTRIDQF 257 >UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1E3_DESDA Length = 185 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 35/165 (21%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + + P ++ C GC +L P + ++ Sbjct: 9 KRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVN------------------ 50 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 K VL+V G++ ++ I + A+I++G+C+ G Sbjct: 51 ----AGNPKHADVLLVTGTVNH---------RNRHVLKQIYEQMPSPKAVISLGACNLSG 97 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 GV N V+P + +PGCPP P + V + Sbjct: 98 GVFKDTYNVLN--GAHNVIPVD--VFVPGCPPKPEAIIDGVVEAL 138 >UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria RepID=C7MLM8_CRYCD Length = 283 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 40/180 (22%) Query: 32 SSKAAAEMAESVTN-----PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEY 86 ++AE+ + + + C GC + P + Sbjct: 37 PKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFD----------- 85 Query: 87 HEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 E + + +LV G++ +AA Sbjct: 86 -----------AERFGIKNMASPRHADILVYTGAVTRAMRLPAL---------RAYEAAP 125 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 I++ G+C GG+ N ++ P + IPGCPP+P + A + Sbjct: 126 DPKLIVSYGACGCTGGIF--HDNYCVWGGTDKLFPVD--VYIPGCPPSPAQTIYGFAMAL 181 >UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_HELMI Length = 175 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 34/173 (19%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 E+V N R +W + C ++ + A FG++V Sbjct: 28 LEAVFNWARGNSLWPLSSGLACCAIEMMATGASRFD---------------MARFGYEVF 72 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + ++++ G++ K P + + + IIA+GSC+ Sbjct: 73 RP------SPRQADLIIIAGTLTWKMA---------PAIQRVYEQMPEPKWIIAMGSCAC 117 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPP 212 GG A + + +V+P + +PGCPP P L + + P Sbjct: 118 TGGPFAD--SYAVVPGVDKVIPVD--VYVPGCPPRPEALLDGFLKLKAKIQNP 166 >UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales RepID=C7PSH0_CHIPD Length = 187 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 36/190 (18%) Query: 17 DFMKLCAALAATMGLSSK-AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVE 75 + + ++A G S + A + V R IW + C + Sbjct: 6 QYNEKVKSVAVPEGYSGEGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMAT------ 59 Query: 76 NLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGE 135 A+ + +L+V G+I K Sbjct: 60 ---------------MASTYDMSRFGSERMAFTPRQCDLLMVMGTISKKMA--------- 95 Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P++ + ++A+G+C++ GGV + + +V+P + +PGCPP P Sbjct: 96 PVLRQVYLQMAEPRWVVAVGACASSGGVF---DTYSVLQGIDQVIPVD--VYVPGCPPRP 150 Query: 196 HNFLATVAHI 205 + + Sbjct: 151 EAIIDGFMRV 160 >UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota RepID=C5U7Y6_9EURY Length = 154 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 45/177 (25%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 + + ++ + V+ + C GC + A + + L + Sbjct: 8 LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTF------------ 55 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG---AAAIIAIG 155 + +L+V G + + + + +RK E A++AIG Sbjct: 56 ---------NPRETDILIVSGCVT------------KFVKESLRKIYEKIPEPKAVVAIG 94 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPG-----KTV-INIPGCPPNPHNFLATVAHII 206 SC+ GGV N G + + + G V + +PGC P P + ++ + I Sbjct: 95 SCALTGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIISGIVKAI 148 >UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8Z3_GEMAT Length = 212 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 35/177 (19%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + N R +W C + + L Y Sbjct: 34 LVNWGRAGSLWPMPFGTACCAIEFMATAASRFDLSRFGMERLSYSP-------------- 79 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + VL+ G +PLK P++ I + +I++G+C++ GG Sbjct: 80 -------RQADVLLCAGRVPLKLA---------PVLRRIYQQMPQPKWVISMGACASTGG 123 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 + N + ++P + +PGCPP P + + + +L D R Sbjct: 124 MF---DNYAVVQGIDTIIPVD--VYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTR 175 >UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3 Tax=Methanobacteriaceae RepID=A5UM99_METS3 Length = 276 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 85/266 (31%), Gaps = 57/266 (21%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 + T +P + +I CTG SL ++ ++ E + + Y + L Sbjct: 40 KQETATNKPRIGYIHLSGCTGDGMSLTENYDI-LDVVLTEMVDIVYGQTLV--------- 89 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 L + + +++GS+ L+D + + + +A E +A I A GSC+ Sbjct: 90 ----DLWEMPEMDLCLIEGSVCLQDE--------HSVHELL-EAREKSALICAFGSCALN 136 Query: 161 GGVAAAGVNPTGAVSLQE-VLPGKTVINI----PGCPPNPHNFLATVAHIITYGKP---P 212 G A E LP +++ + PGCP P TV + P Sbjct: 137 GCFTTYARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCNGDMEYLQP 196 Query: 213 KLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNC 272 LD C + + R+G C GC G C Sbjct: 197 ALD-------LAACSNACGC-------------DLLNNIIRQGLC---SGC-GSCALA-C 231 Query: 273 STLQFCDVGGVWPVAIGHPCYGCNEE 298 T V G + C C Sbjct: 232 QTRAIDMVEGRPTINTDR-CIKCGSC 256 >UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON Length = 273 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 54/188 (28%) Query: 43 VTNPQRPPVIW---IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 ++ + IW + C GC ++ P + VE Sbjct: 1 MSGKPKLRSIWVFHLNTGSCNGCDIEIIDVLTPF----------------------YDVE 38 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + + + L+V G PL Y + I+ I+AIG+C+ Sbjct: 39 RFGIKLVGSPRHAHALLVSG--PLTRQAYYG------AKETIKAMPPEPRVIVAIGTCTC 90 Query: 160 WGGVA----------------AAGVNPTGAVSL-----QEVLPGKTVINIPGCPPNPHNF 198 GG+ + G L E VI IPGCPP P Sbjct: 91 SGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADLRDEGEKVGPVIYIPGCPPRPEEI 150 Query: 199 LATVAHII 206 + +A ++ Sbjct: 151 IYGIAQLV 158 >UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular organisms RepID=NDHK_THEEB Length = 237 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 53/173 (30%), Gaps = 34/173 (19%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 R +W C + Sbjct: 37 WARLSSLWPLMYGTACCFIEFAA----------------------MIGSRFDFDRFGLVP 74 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + +++ G+I +K P + + + +IA+G+C+ GG+ + Sbjct: 75 RNSPRQADLIITSGTITMKMA---------PALVRLYEQMPSPKYVIAMGACTITGGMFS 125 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 + + + + +++P + +PGCPP P + + + ++++ Sbjct: 126 S-DSYSAVRGVDKLIPVD--VYLPGCPPRPEAIMDAIVKLRKKIANEHINERG 175 >UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_ACIBL Length = 213 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 37/162 (22%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R IW C ++ A + Sbjct: 66 NWIRKNSIWPMTFGLACCAIEMMS----------------------MGASRFDIARFGAE 103 Query: 105 ALE-KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + ++++ G + K P++ H+ +I++G+C+ GGV Sbjct: 104 VFRPSPRQSDLMIIAGRVSQKMA---------PVIRHLYLQMPEPKWVISMGACATSGGV 154 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N + + +P I +PGCPP P + + + Sbjct: 155 F---NNYALVQGVNQYIPVD--IYVPGCPPRPEQLIYAITLL 191 >UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU9_ACEP3 Length = 165 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 37/185 (20%) Query: 31 LSSKAAAEMAESVTNPQRPPVI--WIGAQECTGCTESLLRATHPTVENLVLETISLEYHE 88 + +M R P++ + C GC L +L Y Sbjct: 8 FDAAFRQDMRRMKPVGPRWPLLLFHVDTGGCGGCGMEL---------------QALRYAP 52 Query: 89 VLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA 148 G + + VL++ G++ P+++ +A Sbjct: 53 YDMEGAGFG-------FVTSPRNADVLLITGALTRAMA---------PVLEAAWQAMPTP 96 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITY 208 +IA+GSC+ GG+ N T L+ + + IPGCPP P + L + + Sbjct: 97 KGLIAVGSCALDGGMF--PENYTVLGGLERRVSID--LKIPGCPPAPQDVLNGLCSLFGK 152 Query: 209 GKPPK 213 P Sbjct: 153 QAVPP 157 >UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria RepID=UPI00016C3AA7 Length = 201 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 35/179 (19%) Query: 27 ATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEY 86 A + + + N R +W C L+ + + ++ + Sbjct: 2 ALTNMLPDFMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRF 61 Query: 87 HEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAE 146 + V++V G + +K P++ I Sbjct: 62 SP---------------------RQCDVMIVAGRVAMKM---------VPVMQRIWLQMP 91 Query: 147 GAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 I++G+C++ GGV + +P + +PGCPP P + V + Sbjct: 92 EPKWCISMGACASSGGVF---DTYAVVQGIDRFIPVD--VYVPGCPPRPEQLIRAVLDL 145 >UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria RepID=B9L8U0_NAUPA Length = 164 Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 35/163 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 + P ++ C GC +L A P + ++ Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLN--------------------- 46 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 K +L+V G + ++ + ++A+G+C+ GG+ Sbjct: 47 -RGNPKQSDILLVTGPVT---------KRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIF 96 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 + + ++P + IPGC P + + + Sbjct: 97 RDFYHVEN--GVDNIIPVD--VWIPGCAPRVEAVIDGMVEAVK 135 >UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota RepID=Y1363_METJA Length = 151 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 45/177 (25%) Query: 39 MAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQV 98 M + + + V+ + C C ++ A + + L + Sbjct: 4 MIKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTF------------ 51 Query: 99 EENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG---AAAIIAIG 155 + +LVV G + + + + +RK E A++A+G Sbjct: 52 ---------NPREADILVVTGCVT------------KVVAESLRKIYEKIPEPKAVVAVG 90 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPG-----KTV-INIPGCPPNPHNFLATVAHII 206 +C+ GGV N G + + + G V + +PGC P P + +A + + Sbjct: 91 ACALMGGV---YKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPEDIIAGIVKAL 144 >UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales RepID=NUOB_BACV8 Length = 198 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 34/174 (19%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 +K + + N R +W + C + Sbjct: 33 GTKVLVGCLDDLINWGRSNSLWPLTFATSCCGIEFMAVG--------------------- 71 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 AA A + +++V G+I K P++ + + Sbjct: 72 AARYDFARFGFEVARASPRQADMIMVAGTITHKMA---------PVLKRLYDQMADPKYV 122 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 IA+G C+ GG + + ++LP + IPGCPP P L + + Sbjct: 123 IAVGGCAISGGPF--KKSYHVLNGVDKILPVD--VYIPGCPPRPEALLYGMIQL 172 >UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS Length = 196 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 35/160 (21%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + A C C + +P + +E + + + Sbjct: 50 VDAGSCNACEMEIHALNNPV----------------------YDLERFGFSFVASPRHAD 87 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 VL+V G + +A ++A+G C+ GG A + Sbjct: 88 VLLVTGPVTTNMREALLKT---------WEATPDPKWVVALGQCAIDGGPFAD--SYAVV 136 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 +++V+P +I PGCPP P + LA + +I P Sbjct: 137 GGVEKVVPVDLMI--PGCPPRPVDILAALVALIEAEARPP 174 >UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_CLOB8 Length = 169 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 44/158 (27%), Gaps = 34/158 (21%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 R W C ++ A A Sbjct: 32 RAHSFWPLTFGLACCAIEMMAAG---------------------GARYDIARFGYEVFRA 70 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 + +++V G+I K PIV I +IA+GSC+ GG Sbjct: 71 SPRQADLMIVAGTITEKMA---------PIVKKIYDQMPEPKWVIAMGSCATSGGPFVDS 121 Query: 168 VNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N LP + IPGCPP P + + + Sbjct: 122 YNV--VPGADTFLPVD--VYIPGCPPRPEALIHGLLTL 155 >UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei RepID=A2BJ94_HYPBU Length = 209 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 74/226 (32%), Gaps = 42/226 (18%) Query: 15 RRDFMKLCAAL--AATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHP 72 R+ FM L L AA + + +S+ + +W + C P Sbjct: 7 RKGFM-LVGRLEEAAAKAMKWLLERKPIKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDP 65 Query: 73 TVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMV 132 ++ L ++ + + VL+V+G++ K Sbjct: 66 KYDSERLGSLPFTH----------------------PRNTNVLLVEGTLTRKMARAAR-- 101 Query: 133 AGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCP 192 + + +IA+G+C+ GG+ N V + ++LP +PGCP Sbjct: 102 -------LVWEQMPWPKFVIAMGACAITGGIFYNSYN---IVRVNQILPVDYY--VPGCP 149 Query: 193 PNPHNFLATVAHI---ITYGKPPKLDDKNRPTFAYGRLIHEHCERR 235 P P + + + G+ D +++ H RR Sbjct: 150 PTPEAVANALIKLQEKVRKGEWKPRDIEDKKFLEELMAPHYEKARR 195 >UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2 RepID=B8ERX2_METSB Length = 190 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 62/199 (31%), Gaps = 57/199 (28%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 +P + C GC SLL +E +++ + L+ + Sbjct: 11 SAKPRLATCSLTGCFGCHMSLLDIDERILE--LIDLVDLDVSP-------------FDDK 55 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + V V+G + N V + + + ++++G+C+ GGV A Sbjct: 56 KSFDRPVDVGFVEGGCSNEYN-----------VKELIEFRKHCRILVSVGACAINGGVPA 104 Query: 166 AGVNP--------------------------TGAVSLQEVLPGKTVINI----PGCPPNP 195 + L V P V+ I PGCPP+ Sbjct: 105 MRNTVGLRECLEAVYLHGVSLEGGGMIPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSG 164 Query: 196 HNFLATVAHIITYGKPPKL 214 A + ++T G P L Sbjct: 165 DAIWAALKALLT-GTEPAL 182 >UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms RepID=NUOB_DEIGD Length = 178 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 35/179 (19%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 E + R +W C ++ +T Sbjct: 24 LEKLVAWGRSNSLWPATFGLACCAIEMMSSTD---------------------GRNDLSR 62 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + V++V G + K PI+ + +I++G+C++ Sbjct: 63 FGSEVFRASPRQADVMIVAGRLSKKMA---------PIMRRVYDQMPDPKWVISMGACAS 113 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 GG+ N ++ V+P + +PGCPP P + V + + D + Sbjct: 114 SGGMF---NNYAVVQNVDHVVPVD--VFVPGCPPRPEALIYAVMQLQKKVRGEAYDARG 167 >UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms RepID=C9RKY2_FIBSS Length = 419 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 33/174 (18%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 K + V N R IW + C ++ + S Sbjct: 16 GGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSS---------------------S 54 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 A + + ++ G+I + P + + + G + Sbjct: 55 MARYDIARFGSEVFRSSPRQADLFILAGTITRRMA---------PAIQMLWEQIPGPKYV 105 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 IA+G+C+ GG N + Q ++P + +PGCPP P + + Sbjct: 106 IAMGACTISGGPF-IYDNYSVVRGAQNLIPVD--VFVPGCPPRPEALFHGLLTL 156 >UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales RepID=NUOB_AZOPC Length = 191 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 34/163 (20%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + N R +W + C + L AA Sbjct: 34 LINWGRSNSVWPLTFATSCCGIEFMC---------------------LGAARYDFARFGW 72 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + V+ G+I K P++ + +IA+GSC+ GG Sbjct: 73 EVTRNSPRQADVVFCCGTIVHKMA---------PVLKRLYDQMSEPKYVIALGSCAISGG 123 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + + + +++P + IPGCPP P + + + Sbjct: 124 PF--KSSYHTIMGIDKIIPVD--VYIPGCPPRPDAMIYGMIQL 162 >UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria RepID=NUOB2_ACIBL Length = 202 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 35/166 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 + V N R +W C ++ S A Sbjct: 17 VDYVFNWARKSSVWPMTFGLACCAIEMI---------------------TASTARYDIAR 55 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + +++V G++ LK P+V I + ++A+G+C++ Sbjct: 56 FGSEVFRPSPRQSDLMIVAGTVTLKMA---------PVVQRIYEQMPEPKWVMAMGACAS 106 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG + +++P + + GCPP P N + + Sbjct: 107 VGGPF---NTYATLQGVDKIVPVD--VYVVGCPPRPENLFYGLLKL 147 >UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria RepID=NUOB2_STRGG Length = 235 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 34/177 (19%) Query: 29 MGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHE 88 +G+ S+ A E + V N R +W+ C + A+ + + L I Sbjct: 31 LGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPF---- 86 Query: 89 VLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGA 148 + +++V G++ K P V + + Sbjct: 87 -----------------APGPRQADLMIVSGTVTDKMA---------PAVKRLYEQMPEP 120 Query: 149 AAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +I+ G+CS GG + T + +++P + +PGCPP P L + + Sbjct: 121 KYVISFGACSNCGGPYWDSYSVT--KGVDQIIPVD--VYVPGCPPRPEALLQGILKL 173 >UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R7_THEGJ Length = 229 Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 36/171 (21%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ V+ + C GC S++RA + + L+ + Sbjct: 5 EKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDI------------------SYLRDGS 46 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 +Y V ++ G + + I++ +++ E A ++A GSC++ GG+ Sbjct: 47 CQYGEYDVALITGGACMNEPR---------ILEELKEIREKARVVVAFGSCASLGGILRF 97 Query: 164 ----AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 + + V+P +IPGCPP P + + + Sbjct: 98 ARGGQEPRPDHRNFQPINSVIPVDY--SIPGCPPTPQMLQSFFKFFMAGNE 146 >UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria RepID=NUOB1_ROSS1 Length = 268 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 34/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R IW + C ++ + Sbjct: 26 NWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFGA---------------------EM 64 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + +++V G++ K P V + +I++G+C+ GG Sbjct: 65 FRASPRQADLMIVAGTVTKKMA---------PQVVRLYNQMPEPRYVISMGACATSGGPF 115 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 G N + ++P + IPGCPP P L + + Sbjct: 116 RDGYNV--LRGIDLLIPVD--VYIPGCPPRPEALLHALMTL 152 >UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria RepID=NUOB_RUBXD Length = 251 Score = 90.6 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 36/182 (19%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 + + N R +W C ++ + +E Sbjct: 18 DKLFNWARKNSLWPLQFGLACCAIEMMSTGM----------------------AHNDLER 55 Query: 101 NKHNALEK-YKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + V++V G++ K + + +IA+G+C+ Sbjct: 56 FGAGFFAGSPRQADVMIVSGTVSTKMAERMT---------RLYEQMPEPKWVIAMGACAI 106 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 GG G + + V+P + +PGCPP P + + + + + + Sbjct: 107 SGGPFLDG--YSVLMGADRVIPVD--VYVPGCPPRPEALIFGIMTLQKKIEREQQVGYEK 162 Query: 220 PT 221 P Sbjct: 163 PR 164 >UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBM2_9ACTN Length = 195 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 35/160 (21%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + P VI C GC +L + P + ++ Sbjct: 6 SRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNT--------------------- 44 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 K + +V GS+ + P+V I ++A G C+ GGV Sbjct: 45 -GNPKHADIFLVTGSVNAQ---------NLPVVRQIYNQMLEPKCVVACGICACSGGVFR 94 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N G + +P + PGC P + + Sbjct: 95 DAYNVIG--GVDRAIPVD--VYAPGCAIRPETVIDAIVEA 130 >UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAA3_9ACTN Length = 228 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 35/162 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 + + P +I C GC +L + P + I+ Sbjct: 4 SSKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINT-------------------- 43 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 K + +V GS+ + +V HI ++A G C+ GGV Sbjct: 44 --GNPKHADIFLVTGSVNAQ---------NIEVVRHIYDQMLEPKVVVACGICACTGGVF 92 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 N G + + +P + PGC P + V + Sbjct: 93 RDCYNVIG--GVDKAIPVD--VYAPGCAVRPETIIDAVLKAV 130 >UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV9_THEON Length = 225 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 36/171 (21%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 ++ V+ + C GC S++RA ++ + L+ Sbjct: 2 EKLKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDI------------------SYLRKDE 43 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV--- 163 K V ++ G + + I++ +++ E A ++A GSC+ + G+ Sbjct: 44 CKLDEYDVAIITGGACMNEPR---------ILEELKEIREKAHTVVAFGSCATFSGILRF 94 Query: 164 ----AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 + + V+ +IPGCPP P + I + Sbjct: 95 CRGGQEPRPDHRNFQPINSVIKVDY--SIPGCPPTPQMLQSFFKFYINGDE 143 >UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria RepID=NUOB1_OPITP Length = 171 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 35/171 (20%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 A++V N R +W C L++ + + + + Sbjct: 23 ADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIARFGAEVMRFSP----------- 71 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + ++V GS+ K P + I +IA+G+C++ Sbjct: 72 ----------RQSDCMIVAGSVTYKMA---------PQIRRIYDQMMSPKWVIAMGACAS 112 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 GG + + +LP + I GCPP P L + + + Sbjct: 113 SGG---MYRSYAHMQGVDRILPVD--VYISGCPPRPEGILDALMKLQAKIR 158 >UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria RepID=NUOB_FRAAA Length = 281 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 51/181 (28%), Gaps = 35/181 (19%) Query: 25 LAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISL 84 + L E + N R +W C ++ Sbjct: 1 MGLEEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTG-------------- 46 Query: 85 EYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA 144 A + +++V G + K P++ I Sbjct: 47 -------AGRYDLSRFGMEVFRASPRQADLMIVAGRVSQKMA---------PVLRQIYDQ 90 Query: 145 AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAH 204 ++++G C++ GG+ N + ++P + +PGCPP P + + Sbjct: 91 MPEPKWVLSMGVCASSGGMF---NNYAIVQGVDHIVPVD--MYLPGCPPRPEMLMDAIIK 145 Query: 205 I 205 + Sbjct: 146 L 146 >UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_HYDS0 Length = 177 Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 59/195 (30%), Gaps = 36/195 (18%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 + + + + R +W C ++ A Sbjct: 7 GNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHA---------------------- 44 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 AA ++ + VL+V G++ K P++ + Sbjct: 45 AASRFDIDRLGMIFRASPRQADVLIVAGTVVNKVA---------PMLKLVWDQMPEPKWC 95 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKP 211 I++G C++ GG + + ++P + IPGCPP P + + + + Sbjct: 96 ISMGGCASAGGPF---PTYSTLQGIDRIIPVD--VYIPGCPPTPQGLIYGLLELQRKIRE 150 Query: 212 PKLDDKNRPTFAYGR 226 K+ + + + Sbjct: 151 KKVTRYEKAFEEFKK 165 >UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces dermatitidis RepID=C5GDP9_AJEDR Length = 245 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 35/163 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 ++V N R +W + C ++ + P + L TI Sbjct: 98 IDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYDQDRLGTI----------------- 140 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + +L+V G++ K P + + +I++GSC+ Sbjct: 141 -----FRASPRQSDLLIVAGTVTNKMA---------PALRLVYDQMPDPKWVISMGSCAN 186 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 GG + + + +LP + +PGCPP + + Sbjct: 187 GGG--YYHYSYSVVRGVDRLLPVD--VYLPGCPPTAEALMYAI 225 >UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae RepID=C6X0Z2_FLAB3 Length = 185 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 40/199 (20%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 A SV R +W + C + +PT + + Sbjct: 20 GEGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDASRFGMERNSFSP--- 76 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 + +L+V G+I K P++ + + Sbjct: 77 ------------------RQADMLMVCGTISKKLG---------PVLKQVYTQMAEPRWV 109 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV--AHIITYG 209 +A+G+C++ GG+ + + +++P + +PGCPP P + V + G Sbjct: 110 VAVGACASSGGIF---DTYSVLQGIDKIIPVD--VYVPGCPPRPEQIIEGVMQVQALCEG 164 Query: 210 KPP---KLDDKNRPTFAYG 225 + + + +YG Sbjct: 165 ESIRRRDMPEYQNLLASYG 183 >UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A345_NITMS Length = 174 Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 34/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R +W E C+ A+ P + I Sbjct: 35 NWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIE--------------------- 73 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 A + ++VV G+I K P + + +IA+G+C+ GG+ Sbjct: 74 AFGSLRQCDLVVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLY 124 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N + V+P + +PGCPP P + + Sbjct: 125 FDSYNV--LPGIDGVIPVD--VYVPGCPPRPETLIQGCILL 161 >UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST9_DESHY Length = 155 Score = 88.7 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 39/168 (23%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHP--TVENLVLETISLEYHEVLSAAFGHQ 97 A + Q + + C GC + +P ++ L+ ++ H + G Sbjct: 24 AHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPM 83 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 AL Y+G IIA+G C Sbjct: 84 STHLIQAALATYEGT---------------------------------PNPKRIIAVGDC 110 Query: 158 SAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + GG+ + E LP I IPGCPP+P L + + Sbjct: 111 ALDGGMF--KEAYAAHNGVGEALPVD--IKIPGCPPSPDELLKVLLQL 154 >UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria RepID=NUOB2_OPITP Length = 191 Score = 88.3 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 41/191 (21%) Query: 24 ALAATMGLSSKAAAEMAESVTNPQRP---------PVIWIGAQECTGCTESLLRATHPTV 74 +L A G S+ + + +W C ++ A Sbjct: 16 SLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFGLACCAIEMMAAGMARF 75 Query: 75 ENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAG 134 + + V++V G++ K Sbjct: 76 DISRFGA---------------------EVFRPSPRQADVMIVAGTVNKKMA-------- 106 Query: 135 EPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPN 194 P V + +IA+G C+ GG + ++ P + +PGCPP Sbjct: 107 -PAVKLLYDQMLEPKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVD--VYVPGCPPR 163 Query: 195 PHNFLATVAHI 205 P + + + Sbjct: 164 PEALIEGILKL 174 >UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IG01_9CLOT Length = 266 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 37/173 (21%) Query: 31 LSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVL 90 + K ++A+ + + + A C GC + P Sbjct: 125 IGKKLNEKVAKKF--GRSLNIREVDAGSCNGCDYEIQALNGP------------------ 164 Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 + +E + + + +L+V G + A Sbjct: 165 ----YNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKT---------YNATPSPKL 211 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 ++A G+C+ GG+ + G + +LP + IPGCPP P + + Sbjct: 212 VVAAGACACSGGLF--KDSYAGRNGIDTILPVD--VYIPGCPPRPQALIYGIL 260 >UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular organisms RepID=NDHK2_CYAP4 Length = 259 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 34/175 (19%) Query: 31 LSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVL 90 LS + + N R I+ C Sbjct: 22 LSENIILTSLDDIYNWARISSIYPLMYGTACCFIEFAA---------------------- 59 Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 A +E + ++++ G++ ++ + Sbjct: 60 MIASRFDMERFGMFPRASPRQADLIILAGTLTMQMAVP---------TRRLYDQMPEPKY 110 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +IA+G+C GG+ +A +PT ++LP + IPGCPP P L V + Sbjct: 111 VIAMGACMITGGMFSA-DSPTALRGADKLLPID--VYIPGCPPRPEAILDAVTKL 162 >UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria RepID=NUOB2_RHOS1 Length = 205 Score = 87.5 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 36/223 (16%) Query: 31 LSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVL 90 +++ + + R +W + C + A P + Sbjct: 17 MAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQARFGA--------- 67 Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 + +L+V G++ K + + Sbjct: 68 ------------EVIRSTPRQADLLIVSGTVFRKMAVP---------LYRLYSQMREPRW 106 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 +I++G+C+ GG + + LP + +PGCPP P + + + + Sbjct: 107 VISMGACANSGG---MYDIYSVVQGVDSFLPVD--VYVPGCPPRPEALMEALVLLQSKIA 161 Query: 211 PPKLDDKNRPTFAYGRLIHEHCERR-PHFDAGRFAKEFGDEGH 252 + R + RR +A D Sbjct: 162 TEARPLQIRMGETGPARPFDPIPRRDALREARMAVTRLADPEA 204 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 56/194 (28%), Gaps = 38/194 (19%) Query: 28 TMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYH 87 + + + N R +W + C ++ + P + Sbjct: 2 SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGA------ 55 Query: 88 EVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG 147 + ++V+ G+ K + + Sbjct: 56 ---------------EVLRGTPREADLMVIAGTPFKKMAASML---------RVYEEMAN 91 Query: 148 AAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI-- 205 +IA+GSC+ GG + + +VLP + IPGCPP P F+ + + Sbjct: 92 PKWVIAMGSCANSGG---MYDVYSVMQGVNQVLPVD--VYIPGCPPRPEAFMQGLMTLQE 146 Query: 206 -ITYGKPPKLDDKN 218 I + P N Sbjct: 147 KIARKESPARPVLN 160 >UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group RepID=C7IWD0_ORYSJ Length = 379 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 45/111 (40%), Gaps = 12/111 (10%) Query: 96 HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIG 155 + + +++ G++ +K P + + + +IA+G Sbjct: 153 FDFDRYGLVPRSSPRQADLILTAGTVTMKMA---------PSLVRLYEQMPEPKYVIAMG 203 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 +C+ GG+ + + + + +++P + +PGCPP P + + ++ Sbjct: 204 ACTITGGMFST-DSYSTVRGVDKLIPVD--VYLPGCPPKPEAVIDALTKLL 251 >UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae RepID=NUOB_MYXXD Length = 187 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 17/123 (13%) Query: 84 LEYHEVLSAAFGHQVEENKHNALE-KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIR 142 +EY V AA H + + +L+V G+I LK PI+ + Sbjct: 49 MEYMSV--AASRHDISRFGAEFPRFSPRQADLLMVVGTINLKQA---------PILKRVY 97 Query: 143 KAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 + ++A G C++ GG N + ++P + IPGCPP P L + Sbjct: 98 EQMAEPKWVVAFGVCASSGGF---YDNYAVLQGIDRIIPVD--VYIPGCPPRPEQVLDGL 152 Query: 203 AHI 205 + Sbjct: 153 MLL 155 >UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota RepID=A0RY66_CENSY Length = 160 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 34/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R +W E C+ A+ P + I Sbjct: 21 NWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIE--------------------- 59 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 A + ++VV G+I K P + + +IA+G+C+ GG+ Sbjct: 60 AFGSLRQCDLIVVQGTITRKMA---------PRLRLVYDQMPEPKYVIAMGACAITGGLY 110 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N + VLP + +PGCPP P + + Sbjct: 111 FDSYNV--LPGIDGVLPVD--VYVPGCPPRPETLIQGCMLL 147 >UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides RepID=NUOB_DEHSC Length = 200 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 36/175 (20%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 E V N R +W C ++ Sbjct: 49 PPGVFITSVEKVLNWSRHYSLWPVMFGLACCAIEMMC----------------------M 86 Query: 92 AAFGHQVEENKHNA-LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 AA + + + +++V G++ K P + I Sbjct: 87 AASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMA---------PWLKRIYDQMPEPKW 137 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 ++A+G+C GG+ + + V+P + +PGCPP P + + I Sbjct: 138 VLAMGACGTSGGLF--RDSYSVVPGFNLVVPVD--VYVPGCPPRPEALMRAIMDI 188 >UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales RepID=NUOB1_SALAI Length = 188 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 34/173 (19%) Query: 33 SKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSA 92 E V N R +W+ C + + + + L I + Sbjct: 4 PAVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAH------ 57 Query: 93 AFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAII 152 + ++VV G++ K P + + +I Sbjct: 58 ---------------GPRQADLMVVSGTVTDKMA---------PAIKRLYDQMPEPKYVI 93 Query: 153 AIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + G+CS GG + T + +++P + +PGCPP P L + + Sbjct: 94 SFGACSNCGGPYWDSYSVT--KGVDQLIPVD--VYVPGCPPRPEALLHGILRL 142 >UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae RepID=D2R5G9_9PLAN Length = 192 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 35/178 (19%) Query: 28 TMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYH 87 + L + + N R +W C L+ Sbjct: 2 AIDLPENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATG----------------- 44 Query: 88 EVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEG 147 A+ + +++V G + +K P++ I + Sbjct: 45 ----ASRHDLARFGAEVFRFSPRQCDLMIVAGRVVMKM---------LPVLQRIWQQMHE 91 Query: 148 AAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 I++G+C++ GGV + +P + +PGCPP P + + Sbjct: 92 PKWCISMGACASTGGVF---DTYAVVQGIDRFIPVD--MYVPGCPPRPEQLTQAIIDL 144 >UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria RepID=NUOB1_SORC5 Length = 194 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 36/188 (19%) Query: 19 MKLCAALAATM-GLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENL 77 +K M G A +++ N + ++ C + P + Sbjct: 4 VKAGGPSTRVMEGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFD-- 61 Query: 78 VLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPI 137 A FG +V + +L V G+I + P Sbjct: 62 -------------MARFGAEVPRF------SPRQADLLWVVGTISQRQA---------PA 93 Query: 138 VDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHN 197 + I + ++A G+C++ GG N T + +V+P + +PGCPP P Sbjct: 94 LKRIYEQMADPKWVLAFGTCASCGGF---YDNYTTVAGIDKVIPCD--VYVPGCPPRPEA 148 Query: 198 FLATVAHI 205 L + + Sbjct: 149 VLDGLMLL 156 >UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria RepID=B1ZSE5_OPITP Length = 279 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 35/161 (21%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + + + A C GC + + P + +E + Sbjct: 148 GRSLHIREVDAGSCNGCEVEINALSGPI----------------------YDLERFGIHL 185 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + +L+V G + A ++A+G+C GG+ Sbjct: 186 VASPRHADMLLVTGPVTRNMELALRKT---------YDATPEPRLVVAVGACGCSGGMFG 236 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 N S+ VLP + IPGCPPNP L + + Sbjct: 237 --RNYATCGSVDSVLPVD--VYIPGCPPNPFALLHGILLAV 273 >UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Proteobacteria RepID=Q21TB3_RHOFD Length = 254 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 73/202 (36%), Gaps = 41/202 (20%) Query: 11 HGINRRDFMKLCA----ALAATMGLSSKAAAEMAESVTN--PQRPPVIWIGAQECTGCTE 64 ++ + +KLCA AL + + ++++++ + + + A C+GC Sbjct: 84 RKLSFNNDVKLCATSREALTVSSAHPNLDPIKVSKALHKRFGRSLKLRSVSAGGCSGCEM 143 Query: 65 SLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLK 124 + ++ + + + + + LV+ G I Sbjct: 144 EINALSNVNFD----------------------LGRYGIDIVASPRHADALVLSGPITRN 181 Query: 125 DNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKT 184 + A +IA+G+C+ GGV A + A+ Q + K Sbjct: 182 MAQ---------ALQICWDAIPEPKLVIAVGACAISGGVFAD----SDALDRQFLDNFKP 228 Query: 185 VINIPGCPPNPHNFLATVAHII 206 + +PGCP +P F++ + ++ Sbjct: 229 ALYVPGCPAHPLTFISGIMDLL 250 >UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI Length = 255 Score = 85.6 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 44/161 (27%), Gaps = 35/161 (21%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + V + C GC + P E Sbjct: 35 KRSAYVYRVDCGGCNGCEIEIFATLSPLF----------------------DAERFGIKV 72 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + +L+ G++ ++A I+ G+C GG+ Sbjct: 73 VPSPRHADILLFTGAVTRAMRSPAL---------RAWQSAPDPKICISYGACGNSGGIFH 123 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 G +++P + IPGCPP P L A + Sbjct: 124 DLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLYGFAMAL 160 >UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=C5CEV5_KOSOT Length = 137 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 41/164 (25%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + V + A C C +L P + +E Sbjct: 9 KRSLWVFHVSASPCNNCDIEILDMLTPR----------------------YDLERFGIKL 46 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVD---HIRKAAEGAAAIIAIGSCSAWGG 162 + + VL+V G + G + + I A +IA+G+C G Sbjct: 47 VGSVRHADVLLVTG------------MGGCKVSERVIRIYNQAPKPVFVIAVGTCPVAGA 94 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 + T L +P I PGCPP P +A ++ ++ Sbjct: 95 TF--KESYTRCGPLDRFVPVDLYI--PGCPPKPETMIAGLSELL 134 >UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15 Tax=Proteobacteria RepID=Q12F15_POLSJ Length = 181 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 35/158 (22%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + A C GC + +P + +E + + Sbjct: 49 VDAGSCNGCELEIHALNNP----------------------YYNIEGLGIKFVASPRHAD 86 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 +L+V G + + + A ++A+G C GG+ + Sbjct: 87 MLLVTGPVSRHMDE---------ALRRTYDATPEPKLVVAVGDCGCTGGIFGD--SYASC 135 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKP 211 + V+P + +PGCPP P L + + +P Sbjct: 136 GRVANVIPVD--VTVPGCPPPPIEILRGILTAVRQRRP 171 >UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b) (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1 RepID=C0QR84_PERMH Length = 181 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 36/168 (21%) Query: 38 EMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQ 97 E V + R +W + C ++ AA Sbjct: 12 TTVEEVLSWGRRNSLWPASVGLACCAIEMMHT----------------------AASRFD 49 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 + + VL+V G++ K P++ I +IA+G C Sbjct: 50 TDRLGIIFRGSPRQSDVLIVAGTVVNKVA---------PMLKLIYDQMPDPKWVIAMGGC 100 Query: 158 SAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 S+ GG + ++P + +PGCPP P L + + Sbjct: 101 SSAGGPF---PTYATLQGVDRIIPVD--VYVPGCPPTPQALLWGILEL 143 >UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes RepID=NUOB_DESRM Length = 196 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 33/199 (16%) Query: 20 KLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVL 79 KL A A ++ + E + N R +W C L A + Sbjct: 28 KLGAEPAVIGEVARTVSVGPLEKLLNLARANSLWPMGFGLACCAIEGLMAAN-------- 79 Query: 80 ETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVD 139 A + V++V G++ K P V Sbjct: 80 ------------MARFDLARFGYEVMRASPRQADVMLVCGTVTKKAA---------PFVV 118 Query: 140 HIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFL 199 + + +IA+GSC+ GG + + + +++P + IPGC P P + Sbjct: 119 RLYEQMAEPKYVIAMGSCAISGGPFVD--SYSVVPGVDKLIPVD--VYIPGCAPRPDAVI 174 Query: 200 ATVAHIITYGKPPKLDDKN 218 + P++ + Sbjct: 175 HGFMKLKEKIINPEVVKRG 193 >UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1F3_METPS Length = 235 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 81/262 (30%), Gaps = 64/262 (24%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P ++ C+GC S L ++ +++ + +EY Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERLLD--MMDMVDIEYM-------------TLIKDAT 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAG 167 ++ VDG+ L+ E V+ ++KA E A ++A G CS+ A Sbjct: 48 DIPKVDIVFVDGAACLQ---------SEDAVETLKKARENATYLVAWGGCSST----ATI 94 Query: 168 VNPTGAVSLQE-----VLPGKTVIN----IPGCPPNPHNFLATVAHIITYGKPPKLDDKN 218 N + L + P K ++ +PG PP P + + LD Sbjct: 95 NNFSRGGQLPQPQHESFPPIKRLVKVDASVPGSPPGPGMAYNVIRAFVEG----DLDYL- 149 Query: 219 RPTFAYGRLIHEHCERRPHFDAGRFAKEFG--DEGHREGWCLYHLGCKGPETYGNCSTLQ 276 + + G FA + G C +GC C T Sbjct: 150 --------------KYLSSYSLGGFACGCDLWKDIVDNGLC---IGCG--ACAMACPTRA 190 Query: 277 FCDVGGVWPVAIGHPCYGCNEE 298 V G P + C C Sbjct: 191 ITMVEGR-PNNVFERCVKCGAC 211 >UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus RepID=C5A2Q7_THEGJ Length = 283 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 49/183 (26%), Gaps = 51/183 (27%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 + V + C GC L P + E Sbjct: 2 RLRSLYVFHLDTGACNGCEIELFDILTP----------------------YYDAERLGVR 39 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + + + G PL Y + I+ I+AIG+C+ GG+ Sbjct: 40 LAASPRHAHAMAATG--PLTRQAYYA------AKEAIKAMPPKPRIIVAIGTCACSGGIF 91 Query: 165 AAGV-------------NPTGAVSLQEVLPGK--------TVINIPGCPPNPHNFLATVA 203 G + E++ V+ IPGCPP P L VA Sbjct: 92 YNGYPIYRRPESGREGQEYPRRGGIFELVQDLRDEGEYVGPVVYIPGCPPRPEEILYGVA 151 Query: 204 HII 206 + Sbjct: 152 LAL 154 >UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6Y4_9PLAN Length = 227 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 48/166 (28%), Gaps = 33/166 (19%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 E N R IW C ++ A + FG Sbjct: 39 VEQAINWARQSSIWPMTFGLACCAIEMMAAGASRYD---------------MDRFGAGAF 83 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + +++V G++ K V + +IA+G+C+ Sbjct: 84 R------ATPRQADLMIVAGTVTYKMA---------SRVRRLYNMMPDPKFVIAMGACTV 128 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG + V+P + IPGCPP P L + I Sbjct: 129 GGG-PYFKWGYHVVKGVDLVVPVD--VYIPGCPPRPEALLEGLMRI 171 >UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2C0_UNCMA Length = 247 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 35/165 (21%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + + + A C GC + LS A + +E Sbjct: 110 KKAFGRSLAIREVDAGSCNGCEVEV---------------------NSLSNAI-YDIERF 147 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 + + + L+V G + A +IA+G+C+ G Sbjct: 148 GLHIVASPRHADALLVTGPVTRNMERGLMQS---------YNATPDPKMVIAMGACAITG 198 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 G+ + + ++P + IPGCPP P + + I Sbjct: 199 GIF--RDSYAVYNGVDALVPVD--VYIPGCPPRPQAIIQGIMLAI 239 >UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO Length = 174 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 14/127 (11%) Query: 91 SAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAA 150 SAA + E + VL ++G++ K + + Sbjct: 60 SAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAEAAI---------WVYEQMPEPKF 110 Query: 151 IIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 +I +G+C+ GG+ N V ++LP + IPGCPP P + + + Sbjct: 111 VIGMGACAIDGGIFWNSYN---IVRPMDILPVN--VFIPGCPPRPEAVAQAIIMLQRKIR 165 Query: 211 PPKLDDK 217 +L Sbjct: 166 KGELVKY 172 >UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms RepID=NUOB_LEPBA Length = 186 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 15/122 (12%) Query: 84 LEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRK 143 +EY A + + +++V G+I K P++ I Sbjct: 47 IEYMSTACADY-DIARFGAERPSFSPRQADMILVLGTITYKMA---------PVLRQIYD 96 Query: 144 AAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 +I++G+C++ GG+ + +LP + +PGCPP P L + Sbjct: 97 QLAEPKFVISVGACASSGGMFHTYG---VLQGVDRILPVD--VYVPGCPPRPEAILDALV 151 Query: 204 HI 205 + Sbjct: 152 KL 153 >UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG1_9CLOT Length = 242 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 37/184 (20%) Query: 24 ALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETIS 83 +A+ L + ++ + + + C GC + + Sbjct: 91 KMASIEILGQEVKEKIYSKF--KRSLVLRSVDTGSCNGCMMEVSNTQN------------ 136 Query: 84 LEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRK 143 + + + +VV G + L Sbjct: 137 ----------TYYDLSRYGIKFAASPRHADGIVVTGPVTLNMKEALIKT---------YD 177 Query: 144 AAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 A +IA+GSC+ GG+ + L E+L VI PGCPP+P L + Sbjct: 178 AISDPKIVIAVGSCAYSGGIF--KDGYSVCEDLNEILKVNLVI--PGCPPSPQAILYGML 233 Query: 204 HIIT 207 II Sbjct: 234 KIIN 237 >UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular organisms RepID=A1ASR2_PELPD Length = 179 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 35/158 (22%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + V + C GC +L P + VE Sbjct: 11 GRSLWVYHANSGGCNGCDIEVLNVLTP----------------------YYDVERFGIKL 48 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + V++ G M + + A G + AIGSC+ GG+ Sbjct: 49 VGSPRHADVMLCQGP---------AMRSTGKALQRAYAAMPGPKLVFAIGSCACGGGIWH 99 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVA 203 G +++++P +PGCPP P + VA Sbjct: 100 DSYAVHG--PVEKLIPVNYY--VPGCPPRPEAIIWGVA 133 >UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria RepID=NUOB_BLOPB Length = 236 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 40/182 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 + N R +W + C + A A Sbjct: 47 LHKIVNWGRGNSLWPYNFGLSCCYVEMTTAFT---------------------AIHDVAR 85 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + +V+ G+ LK P++ + +I++G+C+ Sbjct: 86 FGSEVLRASPRQADFMVIAGTPFLKM---------VPVIQRLYDQMLEPKWVISMGACAN 136 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 GG + + + LP I PGCPP P ++ + + ++++ R Sbjct: 137 SGG---MYDIYSVVQGVDKFLPVDLYI--PGCPPRPEAYIQGLLLL-----KKSINEERR 186 Query: 220 PT 221 P Sbjct: 187 PL 188 >UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria RepID=NUOB2_CHLT3 Length = 195 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 34/168 (20%) Query: 38 EMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQ 97 AE+V N R +W C ++ A + Sbjct: 16 TAAENVLNWARLSSLWPMGFGLACCAIEMMAT----------------------NASNYD 53 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 +E + +++V G++ K V + + ++++GSC Sbjct: 54 LERFGIFPRSSPRQSDLMIVAGTVTFKMAER---------VVRLYEQMPEPRYVLSMGSC 104 Query: 158 SAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 S GG + ++P + +PGCPP P + + + Sbjct: 105 SNCGGPYWEHG-YHVVKGVDRIIPVD--VYVPGCPPRPEALIGGLMKV 149 >UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum RepID=A3ETD3_9BACT Length = 169 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 55/179 (30%), Gaps = 35/179 (19%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 A + + + A C C L Sbjct: 19 PPLPPDASAPFLPVGGSLSIRHVDAGSCNACELEL----------------------HAM 56 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 + E + + + +L+V G + + +P++D +A + Sbjct: 57 NGSYYAPERDGIRFVASPRHADLLLVTGPVSCQME--------QPLLDT-HEAMASPKTV 107 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGK 210 +A+G C+ GGV +P + + P +PGCPP+P + L + + G Sbjct: 108 LAVGDCACQGGVF--RGSPAVRNGVDGLFPEAR--KVPGCPPSPSDILRALRGLSRPGP 162 >UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT Length = 178 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 54/200 (27%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 R V + C+GC S L +E A + Sbjct: 2 SGRLRVATVWLDGCSGCHMSFLDMDELLLEL---------------APRLELAYSPLVDR 46 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 E + +++G++ ++ R + ++A+G C+ G V A Sbjct: 47 KEFPDRVDLALLEGAVSTPEDEA-----------KARLVRAHSRLVVALGDCACQGNVPA 95 Query: 166 AGVN----------------------PTGAVS--LQEVLPGKTVINI----PGCPPNPHN 197 P V L LP VI + PGCPP P Sbjct: 96 LRNRLDNEQLLDLVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAA 155 Query: 198 FLATVAHIITYGKPPKLDDK 217 + + ++ +L Sbjct: 156 IVRALTAVLDGETLSELPTL 175 >UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial n=57 Tax=cellular organisms RepID=NDUS7_MOUSE Length = 224 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 35/173 (20%) Query: 33 SKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSA 92 ++ + + N R +W C ++ A Sbjct: 71 AEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMH----------------------MA 108 Query: 93 AFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAII 152 A + ++ + V++V G++ K P + + ++ Sbjct: 109 APRYDMDRFGVVFRASPRQADVMIVAGTLTNKMA---------PALRKVYDQMPEPRYVV 159 Query: 153 AIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 ++GSC+ GG + + ++P I +PGCPP L + + Sbjct: 160 SMGSCANGGG--YYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALLYGILQL 208 >UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W241_DESAS Length = 236 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 41/181 (22%) Query: 32 SSKAAAEMAESVTNPQR------PPVIWIGAQECTGCTESLLRATHPTVENLVLETISLE 85 + +A ++ ++ + + ++ A C GC + T+P Sbjct: 88 APASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPV------------ 135 Query: 86 YHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAA 145 + +++ + + + +L+V G + +A Sbjct: 136 ----------YDIQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKT---------YEAC 176 Query: 146 EGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 A ++A+G+C+ GGV + + LP + +PGCPP P + + Sbjct: 177 PRPALVVAVGACACGGGVF--KEAYASGGGVDKFLPVD--VYVPGCPPTPAQIIKGILTA 232 Query: 206 I 206 I Sbjct: 233 I 233 >UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria RepID=B2IID4_BEII9 Length = 177 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 34/159 (21%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + A C GC + + + +E + + Sbjct: 48 VDAGSCNGCELEINALGN----------------------AFYDLERFGLRFVASPRHAD 85 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 VL+V G + A ++A G+C+ GV A Sbjct: 86 VLLVTGPVTHNMREALL---------RTYDATPNPKWVVAAGTCALGEGVFAESYACQK- 135 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPP 212 + V+ I PGCPP P + L + +IT P Sbjct: 136 GGVSAVIAVDLYI--PGCPPTPTDLLKGLLALITKNTGP 172 >UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular organisms RepID=A6UVJ5_META3 Length = 246 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 13/110 (11%) Query: 96 HQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIG 155 + + + + LV+ G + A +IA+G Sbjct: 148 YDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKT---------YDATPSPKFVIAVG 198 Query: 156 SCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +C+ GG+ N + ++LP I PGCPP+P L Sbjct: 199 TCAISGGIF--RENEEVVGGVDKILPVDLYI--PGCPPHPFTNLYAFVKF 244 >UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS Length = 211 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 39/165 (23%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRAT--HPTVENLVLETISLEYHEVLSAAFGHQVEE 100 + N R +W C + + + E + Sbjct: 18 LVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVRF---------------- 61 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 + VL+V G+I K PI+ I + +IA+G+C++ Sbjct: 62 -------TPRQSDVLLVAGTITYKQA---------PILKRIYEQMAEPRWVIAMGACASS 105 Query: 161 GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG + ++P + I GCPP P F + + Sbjct: 106 GGF---YDCYCTVPGIDHIIPVD--VYIGGCPPRPEAFFDAMFDL 145 >UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae RepID=A8MBS9_CALMQ Length = 374 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 36/180 (20%) Query: 41 ESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEE 100 +S+ + IW C A+ P G+ E Sbjct: 25 DSLASWGTKFSIWPAHLVTACCGVEFAHASAP----------------------GYDAER 62 Query: 101 NKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW 160 + + +V++G++ K IV + +IA+GSC+ Sbjct: 63 WGFLPIFGPRQTNSIVIEGTVTRKMAR---------IVKTAYEQMPYPKFVIAMGSCAME 113 Query: 161 GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRP 220 GGV N V + E++P + GCPP P + + + + + ++ RP Sbjct: 114 GGVFW---NSYHVVRVNEIVPVDAWVM--GCPPTPEAVIRAIRMVQSKIEGKEVKPNIRP 168 >UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota RepID=NDUS7_RECAM Length = 182 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 35/166 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 + + N R +W C ++ SAA + ++ Sbjct: 36 MDELVNWARKGSLWPMTFGLACCAVEMMH----------------------SAASRYDLD 73 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + V++V G++ K P + + ++++GSC+ Sbjct: 74 RFGIIFRPSPRQSDVMIVAGTLTNKMA---------PALRKVYDQMSEPRWVVSMGSCAN 124 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG + + ++P I +PGCPP L + + Sbjct: 125 GGG--YYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALLYGLLQL 166 >UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial n=638 Tax=cellular organisms RepID=NDUS7_HUMAN Length = 213 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 35/163 (21%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + N R +W C ++ AA + ++ Sbjct: 70 LVNWARRSSLWPMTFGLACCAVEMMH----------------------MAAPRYDMDRFG 107 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + V++V G++ K P + + ++++GSC+ GG Sbjct: 108 VVFRASPRQSDVMIVAGTLTNKMA---------PALRKVYDQMPEPRYVVSMGSCANGGG 158 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + + ++P I IPGCPP L + + Sbjct: 159 --YYHYSYSVVRGCDRIVPVD--IYIPGCPPTAEALLYGILQL 197 >UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales RepID=NUOB2_SORC5 Length = 182 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 35/176 (19%) Query: 30 GLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEV 89 G+ + + + + N R +W C L++ P Sbjct: 24 GVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPR---------------- 67 Query: 90 LSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA 149 +E + + ++ G++ K V + Sbjct: 68 ------GDLERFGAAPRPSPRSSDLFIIAGTLTYKMA---------TRVKRLYDQMSEPR 112 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +I++GSCS GG+ + + +++P + +PGCPP P L + I Sbjct: 113 FVISMGSCSNCGGLF--QYAYSVCKGVDQIIPVD--VYVPGCPPRPEALLEGLLKI 164 >UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea RepID=B6YWP9_THEON Length = 191 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 49/169 (28%), Gaps = 42/169 (24%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 V + + C GC +L P + VE Sbjct: 3 KNSLWVFHLNSGSCNGCDIEILNIFAPR----------------------NDVERLGIKL 40 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + + + G I + P V KA ++AIG+C+ GG+ Sbjct: 41 VGSPRHADAIAFTGPITRE---------CLPKVIDALKAVPEPKVVLAIGACACGGGI-- 89 Query: 166 AGVNPTGAVSLQEVLPGKT---------VINIPGCPPNPHNFLATVAHI 205 + ++E+ + IPGCPP P + VA Sbjct: 90 WYDTYSVIGGVKELYRILKEEYNMEPPATVFIPGCPPKPEAIIYGVAVA 138 >UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY Length = 172 Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 34/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R +W + C ++ V+ L + Sbjct: 29 NWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLF--------------------- 67 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + + +++V G+I K ++ + +IA+G+C+ GG+ Sbjct: 68 NGDSPRQSDLILVSGTITKKMARRLL---------NVYEQIPDPKYVIAVGACNVSGGLY 118 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 N + ++P I PGCPP P FL V + Sbjct: 119 HDSYN--TIEGIDRIMPVDAFI--PGCPPRPEEFLDAVRVL 155 >UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria RepID=NUOB_SHEWM Length = 213 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 41/217 (18%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 E + R +W + C + + + Sbjct: 31 LEDLVAWGRSNSLWPFNFGLSCCYVEMATSFT---------------------SRHDIAR 69 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + ++V+ G++ LK P++ H+ +I +GSC+ Sbjct: 70 FGSEVIRATPREADLIVISGTVFLKMA---------PVIKHLYDQMLEPKWVICMGSCAN 120 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 GG + LP + +PGCPP P + + ++ + R Sbjct: 121 SGG---MYDVYSVVQGADRFLPID--LYVPGCPPRPEALMYGLT-LLQEAIKDGAPRQAR 174 Query: 220 PT---FAYGRLIHEHCE--RRPHFDAGRFAKEFGDEG 251 P + C R + A + Sbjct: 175 PLNRTITPEEIQAFACRNMRDEKHEQRIKADKLTPPD 211 >UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria RepID=Q2T5T7_BURTA Length = 174 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 37/175 (21%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 + E+ + + I A C GC L +P Sbjct: 29 AQPIRQEILDILGRALCIRAI--DAGSCNGCELELNALGNP------------------- 67 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 + +E + + +L++ G + L V A + Sbjct: 68 ---YYNIEGLGIKFVASPRHADMLLITGPLTLNM---------RDAVRLAYDATPAPKLV 115 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 +A G C+ GGV A + ++ ++P + I GCPP P + L + + Sbjct: 116 VAAGDCACTGGVFA--GSYAVCGPVETLVPVD--VAIAGCPPRPIDLLRGIRGAL 166 >UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCK3_PLALI Length = 225 Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 33/168 (19%) Query: 38 EMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQ 97 E N + +W C ++ + Sbjct: 39 TTLEQAMNWGQLSSVWPLTFGIACCAMEMMATG---------------------MSKYDL 77 Query: 98 VEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSC 157 + +++V G++ K + + +IA+G+C Sbjct: 78 DRFGSGAFRATPRQADLMIVAGTVTYKMA---------SRIRRLYDQMPDPKYVIAMGAC 128 Query: 158 SAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + GG + V+P + IPGCPP P L V I Sbjct: 129 TIGGG-PYFKYGYHVVKGVDLVVPVD--VYIPGCPPRPEALLEGVMRI 173 >UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY Length = 206 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 34/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 R +W C L+ ++ + Sbjct: 52 KWSRSNSMWPMLFGLACCAIELMDFGAARIDAERKGYLLFR------------------- 92 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + V++V G + P V + + ++A G C+ GG Sbjct: 93 --GTPRQCDVMIVAGWVTKSM---------VPRVKRLYEQMASPKYVVAYGECATAGGP- 140 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + + +VLP + GCPP P N A + + Sbjct: 141 -WYESYNIVKGIDQVLPVD--VYAIGCPPKPENLFAALMKL 178 >UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms RepID=NUOB_GRABC Length = 194 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 35/166 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 + + N R +W C ++ A P + I Sbjct: 51 LDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRFGVI----------------- 93 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + V++V G++ K P + + +I++GSC+ Sbjct: 94 -----PRASPRQSDVMIVAGTLTNKMA---------PALRRVYDQMPEPRWVISMGSCAN 139 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG + + ++P + +PGCPP + + + Sbjct: 140 GGG--YYHYSYSVVRGCDRIVPVD--VYVPGCPPTAEALVYGIMQL 181 >UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales RepID=Q978D5_THEVO Length = 222 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 41/173 (23%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + V I + C C L P + + Sbjct: 87 RSFHVFPIDSGACGACNMEFLSIFSP----------------------QYDANRLGIFMV 124 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + L+V G + + +D +A +IA+G+C+ GG+ Sbjct: 125 NTPRYADALIVMGVMTPGM---------KEALDRAYEAMPEPKLVIAMGACAVTGGI--M 173 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNR 219 G NP + K + I GCPP+P+ +A + + + + R Sbjct: 174 GENP--------LDREKYNVEIAGCPPSPYTLIAALNAAMKDKRKADYFESKR 218 >UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VB41_9EURY Length = 236 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 16/128 (12%) Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + V++V G+I K P + + ++ +GSC+ GG Sbjct: 98 ASPRQADVIIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVGMGSCTVSGGPFQE 148 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI---ITYGKPPKLDDKNRPTFA 223 G N +EV+P I++PGCPP P + VA + I G+ + K Sbjct: 149 GYNV--IKGAEEVIPVD--IHVPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYELEQ 204 Query: 224 YGRLIHEH 231 +G L + Sbjct: 205 FGDLEQDE 212 >UniRef50_Q53161 Hydrogen uptake hydrogenase small subunit (Fragment) n=2 Tax=Rhodobacteraceae RepID=Q53161_RHOSH Length = 59 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 1 MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGA 56 + ++ GI RR FMK C+ AA +GL ++A ++ R PVIW+ Sbjct: 4 IETFYDVMRRQGITRRSFMKYCSLTAAALGLGPSFVPKIAHAMETKPRTPVIWVHG 59 >UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae RepID=B0R3U2_HALS3 Length = 235 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%) Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + V++V G+I K P + + ++ +G+CS GG Sbjct: 97 ASPRQADVMIVPGTIVSKFA---------PRMKRVYDQMPEPKFVVNMGNCSTSGGPFQE 147 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 G N +EV+P I+IPGCPP P + VA + Sbjct: 148 GYNV--VKGAEEVIPVD--IHIPGCPPRPEALVYGVAKL 182 >UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2X8_UNCMA Length = 232 Score = 77.5 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 35/170 (20%) Query: 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALE 107 +P ++ C+GC S L ++ +++ + ++Y +++ A Sbjct: 3 KPKFAYVHLAACSGCEISFLDNFERVLD--MMDMVDIDYMTLIADAT------------- 47 Query: 108 KYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW------- 160 + +L VDG+ L+ + V+ ++KA E ++A G CS+ Sbjct: 48 EIPKVDLLFVDGAACLQ---------SKESVESLKKARENTGFLVAWGGCSSTATINNFS 98 Query: 161 -GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYG 209 GG + + ++ +PG PP P + + Sbjct: 99 RGG-QSPQPQHESFPQISRLVKVDAF--VPGSPPGPEMAYNVIRAFVEGD 145 >UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei RepID=A1RZ48_THEPD Length = 171 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 36/154 (23%) Query: 52 IWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKG 111 +W + C + P + E + Sbjct: 42 LWPVHFTTSCCGAEFAATSAPRFD----------------------AERFGFLPFNSPRQ 79 Query: 112 QYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPT 171 ++V++G++ K + +IA+G+C+ GG+ + Sbjct: 80 TNLMVIEGTLTKKMGEAA---------KIVYDQMPWPKFVIAMGACAIDGGLF--YNSYN 128 Query: 172 GAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 +++LP + I PGCPP P + + Sbjct: 129 IVRP-KDILPVEYFI--PGCPPRPEAVAQAIIML 159 >UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP Length = 190 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 35/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R +W Q C +L P + I Sbjct: 52 NWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGII---------------------- 89 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + V+++ G I K P + ++ + IA+G C+ GG Sbjct: 90 PRATPRQADVMIISGYITRKY---------LPAIKNLWEQMLEPKWCIAVGECAISGGPF 140 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + + + P + +PGCPP P F+ + Sbjct: 141 --YDSYNIIQNTSDFFPID--VYVPGCPPRPEQFIKGFVEL 177 >UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group RepID=A5TDF9_BURMA Length = 293 Score = 77.1 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 37/190 (19%) Query: 34 KAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAA 93 ++ + +W C ++ A A Sbjct: 138 GFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHA----------------------AG 175 Query: 94 FGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIA 153 + ++ + +++V G++ K P + + +++ Sbjct: 176 ARYDMDRFGMIPRASPRQCDLMIVAGTLTNKMA---------PAMRRVYDQMAEPRYVVS 226 Query: 154 IGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPK 213 +GSC+ GG + + ++P + +PGCPP + + + K + Sbjct: 227 MGSCANGGG--YYHYSYSVVRGCDRIVPVD--VYVPGCPPTAEALVYGLMQLQR--KVAE 280 Query: 214 LDDKNRPTFA 223 +RP Sbjct: 281 RSTHSRPKLF 290 >UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B297_SULD5 Length = 138 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 47/155 (30%), Gaps = 34/155 (21%) Query: 51 VIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYK 110 V I C GC +L + VL FG + Sbjct: 7 VYRINTGSCNGCDVEILAS-------------------VLLPKFGFDALGCVYT--NDPT 45 Query: 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNP 170 +L+V G+I P + K ++A+G C GGV Sbjct: 46 LANILLVTGAITA---------RSTPYLQAALKQLPSKKIVVALGICPISGGVFRDSYAI 96 Query: 171 TGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 TG L + +NI GCPP+P +A Sbjct: 97 TG--PLDTFVDVD--VNISGCPPSPKEIAQGLAQA 127 >UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU23_HALUD Length = 191 Score = 75.2 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 61/212 (28%) Query: 35 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAF 94 +A+ + R V + C+GC L H V+ ++E + + ++ Sbjct: 1 MSAQTEAEAQDDDRTTVATVCLGGCSGCHMEFLNVDHGLVD--LVEEVDIVASHMIVDEK 58 Query: 95 GHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAI 154 G V + +G + ++N E ++A Sbjct: 59 GV-------------PEADVGIAEGVVTNEENVEVAEE-----------LRENCDTVVAW 94 Query: 155 GSCSAWGGVAAAGVNPTG--------------------------------AVSLQEVLPG 182 G C+A G+ + A L E + Sbjct: 95 GDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFGDDEGVPKLLEDARPLDEYIDV 154 Query: 183 KTVINIPGCPPNPHNFLATVAHIITYGKPPKL 214 + +PGCPP+ ++ + G+ P++ Sbjct: 155 D--VYVPGCPPDAEVMKESL-EALARGETPEI 183 >UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZJ00_GLUDA Length = 166 Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 35/182 (19%) Query: 25 LAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISL 84 +A + + + VT + V + C GC + Sbjct: 1 MALLRAILAGRRPAVRLPVTGARPLAVFHVETGGCEGCAMEVAALD-------------- 46 Query: 85 EYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA 144 + + + + VL+V G + P+++ A Sbjct: 47 --------GAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMA---------PVLEAAWHA 89 Query: 145 AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAH 204 A++A+G+C+ GG N L+ + +PGCPP+P LA +A Sbjct: 90 MPEPRALVAVGACAIDGGPF--PENYAVLGGLEGRATLD--MTVPGCPPSPAAILAGLAR 145 Query: 205 II 206 ++ Sbjct: 146 VL 147 >UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F29 Length = 156 Score = 74.8 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 26/135 (19%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 + +P + C GC +LL +E + + + + A G Sbjct: 1 MMMRETKPTLAVHKFSSCDGCQLALLNLGEALLE--LPNYLEIVHF----AEAGPS---- 50 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 + + +V+GSI ++ ++ IR+ + + +I+IG+C+ G Sbjct: 51 -----DPTAHVDLALVEGSISTPED-----------IERIRQVRKNSDYLISIGACATAG 94 Query: 162 GVAAAGVNPTGAVSL 176 G+ A GA + Sbjct: 95 GIQALRNLADGAAWM 109 >UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW47_ACICJ Length = 264 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 36/160 (22%) Query: 47 QRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNAL 106 + V + A C GC L +P L Sbjct: 126 RSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTP--------------------- 164 Query: 107 EKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAA 166 + +L+V G + + +A ++A G+C+ GG+A Sbjct: 165 -SPRFADLLLVTGPVTRAMLEP---------LRRTWEAMPAPRWVMASGTCAVSGGIAPG 214 Query: 167 GVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 G + L+E LP + +PGCPPNP + + + Sbjct: 215 GPCLS---GLEEALPVD--LYLPGCPPNPAAIIEALLMFL 249 >UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria RepID=B5E8B5_GEOBB Length = 332 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 34/164 (20%) Query: 42 SVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEEN 101 T + + I C GC L V +A VE+ Sbjct: 6 KETPAEPVRLFRINTGSCNGCDVELA---------------------VTAAVDEFDVEQL 44 Query: 102 KHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWG 161 E+ +L++ G V + A +A+G C G Sbjct: 45 GCRYTEEPHEADILLITGP---------LTVRARNEALRLYAEAPETKVTVAVGVCPVSG 95 Query: 162 GVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GV + +Q LP +N+PGCPP P LA +A Sbjct: 96 GVF--RDSYAVDGPVQRYLPVD--LNVPGCPPRPQALLAGIAQA 135 >UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales RepID=B2V8R1_SULSY Length = 173 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 35/154 (22%) Query: 54 IGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQY 113 + + C C + ++P + +E + K Sbjct: 49 VDSGSCNACEYEISALSNP----------------------YYDIERFGVKFVASPKHAD 86 Query: 114 VLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGA 173 +++ G + V + IIA+G C+ GG + Sbjct: 87 AIMITGCLTRNM---------YEAVMKAYENVPNPKFIIAVGDCALDGGTF--KGSYAVM 135 Query: 174 VSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 +++ LP I I GCPP P + ++ + ++ Sbjct: 136 DGIKDKLPID--IWIKGCPPEPIDIISGLLILLN 167 >UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria RepID=NUOB_SALRD Length = 213 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 35/174 (20%) Query: 32 SSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLS 91 ++ N R + C ++ P ++ + ++ + Sbjct: 9 GQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRFSP--- 65 Query: 92 AAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAI 151 + +++V G +C + + Sbjct: 66 ------------------RQADLMIVAG---------WCSYKMSHAIRRVWDQMGDPKWC 98 Query: 152 IAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 IA+G+C++ GG+ + LP + I GCPP P + L + I Sbjct: 99 IAMGACASTGGMHRCYG---VVQGVDNFLPVD--VYISGCPPRPESVLHALMDI 147 >UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae RepID=A4WJL4_PYRAR Length = 196 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 36/166 (21%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 E + N +W + C + + P G E Sbjct: 22 LEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGP----------------------GFDAE 59 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 + V++V+G+I K ++ + + ++A+G+C+ Sbjct: 60 RWGVLPFHTMRQSNVILVEGTITRKMAK---------VLKMVYEQMPEPKFVLAMGACAV 110 Query: 160 WGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 GG+ + + I GCPP P + + Sbjct: 111 RGGLFWNSYHVVQVD-----TVVPVDVYIAGCPPTPEAVVRAFIML 151 >UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39SF9_GEOMG Length = 244 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 13/118 (11%) Query: 90 LSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAA 149 + + G + + + L V G + +A Sbjct: 136 VLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMAKALLTT---------YEAIPDPK 186 Query: 150 AIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT 207 ++A G+C+ GG P + ++P I PGCPP+P L + I+ Sbjct: 187 IVVACGACAINGGP--YIDTPQVCNGVDSIVPVDLYI--PGCPPHPATILDGLLRILN 240 >UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC3_9PROT Length = 140 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 34/164 (20%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + P + I C GC + + + +++ Sbjct: 1 MEMSSNPKIFRINTGSCNGCDVEIAASV---------------------MSSRFDLQKLG 39 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 +E + + ++ G + P + + K + +I++G+CS G Sbjct: 40 CEYIETSEDADIFMITGPVTA---------RSLPFLKEVIKNHKKPYVVISLGTCSVTCG 90 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 + + + + +N+ GCPP P L V I Sbjct: 91 IF--RDSYPILGPVDSYVNVD--VNVAGCPPRPQAILEGVKTAI 130 >UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus RepID=D2PJN5_SULIS Length = 201 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 43/160 (26%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + + I + C GC L L ++ + + Sbjct: 82 KRSFYLYPIDSGTCGGCNMEL----------------------KLISSPEYDMTRFSIFF 119 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAA 165 + LVV G + K + ++ +A +I +G+C+ GG+ Sbjct: 120 TNTPRHADALVVMGVMTEKM---------KEVLKKAYEAMPEPKVVILLGACAISGGI-- 168 Query: 166 AGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + E +P + V+ I GCPPNP L + + Sbjct: 169 ----------IGEGVPLEAVVEISGCPPNPFTILEALMKV 198 >UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Epsilonproteobacteria RepID=B9L626_NAUPA Length = 157 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 35/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 N R WI C+ +L A P + E + Sbjct: 9 NYARSKSPWIVHFCSGCCSLEMLAAMGPR----------------------YDWERYGYI 46 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + ++ + G + K P + + ++AIG+C+ GG Sbjct: 47 MTPTPRQADIMFITGLVSKK---------ILPALLRTYEQMPEPRYVVAIGACAYDGGP- 96 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 + + ++ E+LP + + GCPP P +A + + Sbjct: 97 -YNDSVSVIKNMTEILPAD--VFVAGCPPRPEAIIAGLEEL 134 >UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular organisms RepID=A7I7C9_METB6 Length = 172 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 13/113 (11%) Query: 94 FGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIA 153 + VE + + + VL+V G+I A ++A Sbjct: 66 AYYDVERFGISFVASPRHADVLLVTGAITCNMAIAA---------QKTYDAMPSPKFVVA 116 Query: 154 IGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 +G + GG+ + P + IPG PP P L + ++ Sbjct: 117 VGDDACDGGI--YKGTYAVLGGADAIFPVD--LKIPGNPPAPIQILTGLLALM 165 >UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1 Tax=Ricinus communis RepID=B9SD17_RICCO Length = 188 Score = 70.9 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 136 PIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195 P + + + +IA+G+C+ GG+ + + + + +++P + GCPP P Sbjct: 3 PSLVRLYEQIPEPKYVIAMGACTITGGMFST-DSYSTIRGVDKLIPVDAY--LSGCPPKP 59 Query: 196 HNFLATVAHI 205 + + + Sbjct: 60 EAVIDAITKL 69 >UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X3_IGNH4 Length = 207 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 49/202 (24%) Query: 40 AESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVE 99 + R +W+ C +++A A H E Sbjct: 20 VKEALKWSRRNSLWLLHLGIMCCAIEMMQA----------------------AFAFHDFE 57 Query: 100 ENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSA 159 A + V++++G + K + + G +I +G C+ Sbjct: 58 RLGVLARATPRQVDVILINGPVNRKLAER---------LRRLFMQTPGPRFVIVMGECAI 108 Query: 160 WGG--VAAAGVNPTGAVSLQEVLPGKT--------VINIPGCPPNPHNFLATVAHIITYG 209 GG + + EV+ V+N+ GCPP P L + + Sbjct: 109 NGGPWWQSDY----VLDGIHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKM--EE 162 Query: 210 KPPKLDDKNRPTFAYGRLIHEH 231 + D P Y +H+ Sbjct: 163 LINEGDLARAPLTRY--RLHDE 182 >UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15 Tax=Actinomycetales RepID=A1SQ82_NOCSJ Length = 162 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 35/159 (22%) Query: 44 TNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKH 103 + + A C GC + A P + E Sbjct: 33 ELAGSVQIRHVDAGSCNGCEIEVGGAFGPV----------------------YDAERYGA 70 Query: 104 NALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGV 163 + + V++V G + + +A ++A+G C+ G Sbjct: 71 RLVASPRHADVVLVTGVVTHNMLEP---------LRRTVEATPRPRLVLAVGDCARNCG- 120 Query: 164 AAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATV 202 A A ++ + + + +PGCPP P + + Sbjct: 121 -AFKGGYGVAGAVHDAVDVD--LEVPGCPPEPAAIVDAL 156 >UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU78_GLUOX Length = 161 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 35/161 (21%) Query: 45 NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHN 104 + + + A C GC + +E+ Sbjct: 33 RERPIGLYVLEAGGCEGCFMEI----------------------ESLNGSAFALEQAGFV 70 Query: 105 ALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGGVA 164 + L++ G++ +VD + +A ++IA+G+C+ GG Sbjct: 71 CVSDPADADWLLLTGAVTR---------VCAEMVDRVWRAMPPGRSLIAVGACAVDGGPF 121 Query: 165 AAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHI 205 AG L+ + P + +I GCPP+P + L + + Sbjct: 122 PAG--YATLGGLEALTPVRR--SIAGCPPSPDDILRALQEL 158 >UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11 Tax=cellular organisms RepID=C5A4Q2_THEGJ Length = 194 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 35/183 (19%) Query: 43 VTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK 102 + R +WI A CTGC P + A + E Sbjct: 21 LFRWARKKSLWIVAF-CTGCG----GIEMPPL-----------------ATARYDFERFG 58 Query: 103 HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAWGG 162 + + ++ G + K + + ++A GSC GG Sbjct: 59 IMPNPAPRMADLFLITGYVTPKTLKRII---------ITYEMMQDPKYVLAHGSCPINGG 109 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTF 222 V N L + +P + I GC P P + + I+ + + D R Sbjct: 110 VYWDSYNV--VKQLDKYIPID--VAIAGCMPRPEAVMDGIMEIMRKIENGEADGWKRYRE 165 Query: 223 AYG 225 Y Sbjct: 166 NYE 168 >UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW77_ACICJ Length = 164 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 56/178 (31%), Gaps = 41/178 (23%) Query: 46 PQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNA 105 + V + A C GC + AA G Sbjct: 23 GRSLAVRHVDAGSCGGCEIEIAAC---------------RRLRGGMAAHGIA-------M 60 Query: 106 LEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA---AEGAAAIIAIGSCSAWGG 162 +E + +L+V G VA + + +RK+ ++A G C+ GG Sbjct: 61 VEDLRAADILLVTG------------VATRNLAEAVRKSLAGMAPPRFVVAAGDCALDGG 108 Query: 163 VAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRP 220 V P +Q V+P +I GCPP P LA + ++ + P Sbjct: 109 VF--KGVPAVLGGVQAVIPVDLLI--AGCPPAPRQILAGLVALVEANAREPRRARVEP 162 >UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31273 Length = 229 Score = 68.2 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 38/180 (21%) Query: 35 AAAEMAESVTNPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAF 94 + VT R ++ C ++ L A Sbjct: 48 VLTTTLDKVTAWARGNSMFPATFGLACCAIEMM---------------------SLPGAR 86 Query: 95 GHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAI 154 + +L++ G + +K PIV I I++ Sbjct: 87 LDIGRFGFEAFRASPRQADMLILSGRVSIKMA---------PIVRRIYDQMLEPRWAISM 137 Query: 155 GSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIIT--YGKPP 212 G+C + GV N V + +P +++PGCPP P + + + +G PP Sbjct: 138 GACCSSMGVF---NNYA-LVPADKFMPID--VHVPGCPPRPEALAHAILKLRSKVHGNPP 191 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.127 0.390 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,141,335,375 Number of Sequences: 3077464 Number of extensions: 90073404 Number of successful extensions: 264448 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 333 Number of HSP's successfully gapped in prelim test: 249 Number of HSP's that attempted gapping in prelim test: 262271 Number of HSP's gapped (non-prelim): 683 length of query: 372 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 242 effective length of database: 640,326,036 effective search space: 154958900712 effective search space used: 154958900712 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.9 bits)