BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (170 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 345 2e-94 UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) ... 309 3e-83 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 164 1e-39 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 163 2e-39 UniRef50_P38684 TorCAD operon transcriptional regulatory protein... 145 6e-34 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 143 2e-33 UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein... 138 7e-32 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 136 3e-31 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 135 5e-31 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 134 1e-30 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 133 2e-30 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 133 2e-30 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 133 2e-30 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 133 3e-30 UniRef50_A0L527 Two component transcriptional regulator, winged ... 132 5e-30 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 131 9e-30 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 130 1e-29 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 130 2e-29 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 129 5e-29 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 128 8e-29 UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ 125 4e-28 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 122 4e-27 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 122 5e-27 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 121 8e-27 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 121 9e-27 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 121 9e-27 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 121 9e-27 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 121 1e-26 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 121 1e-26 UniRef50_B6R185 Response regulator in two-component regulatory s... 120 1e-26 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 120 2e-26 UniRef50_B8IVD0 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa... 119 5e-26 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 118 6e-26 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 118 8e-26 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 118 9e-26 UniRef50_A4TVF9 Response regulators consisting of a CheY-like re... 117 1e-25 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 117 1e-25 UniRef50_C6QH06 Two component transcriptional regulator, winged ... 117 2e-25 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 117 2e-25 UniRef50_D0XTW5 Two component transcriptional regulator, winged ... 116 2e-25 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 115 4e-25 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 115 4e-25 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 115 5e-25 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 115 6e-25 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 115 7e-25 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 114 1e-24 UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobact... 114 2e-24 UniRef50_B0SB02 Sensor protein of a two-component response regul... 113 2e-24 UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomo... 113 2e-24 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 113 2e-24 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 112 7e-24 UniRef50_C3JXL3 Oxidative stress related two component system, t... 112 7e-24 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 112 7e-24 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 111 8e-24 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 111 9e-24 UniRef50_Q1GMB0 Two component transcriptional regulator, winged ... 111 9e-24 UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria R... 110 1e-23 UniRef50_C7DBU8 Alkaline phosphatase synthesis transcriptional r... 110 1e-23 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 110 2e-23 UniRef50_A8GAJ9 Two component transcriptional regulator, winged ... 110 2e-23 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 110 2e-23 UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 T... 110 2e-23 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 110 3e-23 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 109 3e-23 UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteob... 109 3e-23 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 109 3e-23 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 109 3e-23 UniRef50_Q11E93 Two component transcriptional regulator, winged ... 109 4e-23 UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=... 109 4e-23 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 108 5e-23 UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rh... 108 5e-23 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 108 8e-23 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 108 8e-23 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 108 9e-23 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 108 1e-22 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 107 1e-22 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 107 1e-22 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 107 1e-22 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 107 2e-22 UniRef50_B4WZT8 Response regulator receiver domain protein n=1 T... 107 2e-22 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 107 2e-22 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 106 2e-22 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 106 3e-22 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 106 4e-22 UniRef50_A9DQD6 Probable two-component response regulator protei... 105 4e-22 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 105 5e-22 UniRef50_C4L340 Two component transcriptional regulator, winged ... 105 5e-22 UniRef50_A3PND2 Two component transcriptional regulator, winged ... 105 5e-22 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 105 7e-22 UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticu... 105 7e-22 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 105 8e-22 UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 T... 105 8e-22 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 104 9e-22 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 104 1e-21 UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphap... 104 1e-21 UniRef50_A1SYE4 Two component transcriptional regulator, winged ... 104 1e-21 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 104 1e-21 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 104 1e-21 UniRef50_A0Z5Z4 Two component transcriptional regulator, winged ... 104 1e-21 UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudoma... 104 1e-21 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 104 1e-21 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 104 1e-21 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 103 2e-21 UniRef50_C6WIA6 Two component transcriptional regulator, winged ... 103 2e-21 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 103 2e-21 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 103 2e-21 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 103 3e-21 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 102 4e-21 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 102 4e-21 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 102 4e-21 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 102 5e-21 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 102 6e-21 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 102 6e-21 UniRef50_C7PII2 Two component transcriptional regulator, winged ... 102 6e-21 UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heli... 102 6e-21 UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia... 102 6e-21 UniRef50_Q1NBG5 Two component transcriptional regulator, winged ... 102 7e-21 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 102 7e-21 UniRef50_C2Y7B7 Two-component response regulator n=1 Tax=Bacillu... 101 7e-21 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 101 8e-21 UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like rec... 101 8e-21 UniRef50_Q3A190 Two component signal transduction response regul... 101 9e-21 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 101 9e-21 UniRef50_A1VSF0 Two component transcriptional regulator, winged ... 101 1e-20 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 101 1e-20 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 100 1e-20 UniRef50_C4RGF6 Two-component system response regulator receiver... 100 1e-20 UniRef50_Q1D8M8 DNA-binding response regulator PhoP2 n=4 Tax=Myx... 100 2e-20 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 100 2e-20 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 100 2e-20 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 100 2e-20 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 100 2e-20 UniRef50_Q2W1M5 Response regulator consisting of a CheY-like rec... 100 2e-20 UniRef50_UPI00016A3BF9 Response regulator n=3 Tax=pseudomallei g... 100 2e-20 UniRef50_A6TM13 Two component transcriptional regulator, winged ... 100 2e-20 UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=... 100 2e-20 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 100 2e-20 UniRef50_D1AFR9 Two component transcriptional regulator, winged ... 100 2e-20 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 100 2e-20 UniRef50_B0K8A6 Response regulator receiver modulated diguanylat... 100 2e-20 UniRef50_Q5HR28 Response regulator saeR n=60 Tax=Staphylococcus ... 100 2e-20 UniRef50_A7HP70 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 100 3e-20 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_A1VI78 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 100 3e-20 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 100 3e-20 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 99 4e-20 UniRef50_D0RRP4 Protein PetR n=1 Tax=alpha proteobacterium HIMB1... 99 4e-20 UniRef50_C5SHJ8 Two component transcriptional regulator, winged ... 99 4e-20 UniRef50_D1BZA1 Two component transcriptional regulator, winged ... 99 4e-20 UniRef50_C0Z4B7 Two-component response regulator n=5 Tax=Firmicu... 99 4e-20 UniRef50_D0XTW3 Two component transcriptional regulator, winged ... 99 4e-20 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 99 5e-20 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 99 5e-20 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 99 5e-20 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 99 5e-20 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 99 5e-20 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 99 6e-20 UniRef50_C8SKC4 Two component transcriptional regulator, winged ... 99 6e-20 UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocys... 99 7e-20 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 99 7e-20 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 98 9e-20 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 98 9e-20 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 98 1e-19 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 98 1e-19 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 98 1e-19 UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=... 98 1e-19 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 98 1e-19 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 98 1e-19 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 98 1e-19 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 98 1e-19 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 98 1e-19 UniRef50_Q1VFU1 Two-component response regulator CreB n=6 Tax=Vi... 97 1e-19 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 97 1e-19 UniRef50_C8R030 Two component transcriptional regulator, winged ... 97 2e-19 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 97 2e-19 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 97 2e-19 UniRef50_C4L703 Two component transcriptional regulator, winged ... 97 2e-19 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 97 2e-19 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 97 2e-19 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 97 2e-19 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 97 2e-19 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 97 2e-19 UniRef50_Q2W1S0 Response regulator consisting of a CheY-like rec... 97 2e-19 UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenel... 97 2e-19 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 97 2e-19 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 97 2e-19 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 97 2e-19 UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria R... 97 3e-19 UniRef50_Q2W923 Response regulator n=2 Tax=Magnetospirillum RepI... 97 3e-19 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 97 3e-19 UniRef50_D2ERE1 DNA-binding response regulator n=1 Tax=Streptoco... 97 3e-19 UniRef50_UPI000196B4E5 hypothetical protein CATMIT_00997 n=1 Tax... 96 3e-19 UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=... 96 4e-19 UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholde... 96 4e-19 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 96 4e-19 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 96 4e-19 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 96 4e-19 UniRef50_C9XMG9 Two-component system response regulator n=9 Tax=... 96 4e-19 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 96 5e-19 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 96 5e-19 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 96 5e-19 UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerot... 96 5e-19 UniRef50_Q2P1E0 VirG-like two component response regulator n=13 ... 96 6e-19 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 96 6e-19 UniRef50_B8G179 Two component transcriptional regulator, winged ... 96 6e-19 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 96 6e-19 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 96 7e-19 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 96 7e-19 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 96 7e-19 UniRef50_B8IIA6 Two component transcriptional regulator, winged ... 95 8e-19 UniRef50_A9B2W4 Two component transcriptional regulator, winged ... 95 8e-19 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 95 8e-19 UniRef50_B5ZPT0 Two component transcriptional regulator, winged ... 95 8e-19 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 95 9e-19 UniRef50_Q0KAU9 Response regulator, OmpR-family n=1 Tax=Ralstoni... 95 9e-19 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 95 9e-19 UniRef50_B8FS97 Two component transcriptional regulator, winged ... 95 1e-18 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 95 1e-18 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 94 1e-18 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 94 1e-18 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 94 1e-18 UniRef50_C8QI30 Two component transcriptional regulator, winged ... 94 1e-18 UniRef50_B7JF46 DNA-binding response regulator n=87 Tax=Bacteria... 94 1e-18 UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6... 94 1e-18 UniRef50_Q137J5 Response regulator receiver n=1 Tax=Rhodopseudom... 94 1e-18 UniRef50_Q0TSV3 DNA-binding response regulator n=44 Tax=Bacteria... 94 1e-18 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 94 1e-18 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 94 1e-18 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 94 2e-18 UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax... 94 2e-18 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 94 2e-18 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_B7K6Q7 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_UPI0001745063 two component transcriptional regulator, ... 94 2e-18 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 94 2e-18 UniRef50_A4EGJ5 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_B2V1N0 DNA-binding response regulator n=10 Tax=Firmicut... 94 2e-18 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrional... 94 2e-18 UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomon... 94 2e-18 UniRef50_A7B7I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 94 2e-18 UniRef50_C7QI13 Two component transcriptional regulator, winged ... 94 2e-18 UniRef50_C7LNV6 Two component transcriptional regulator, winged ... 94 2e-18 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 345 bits (886), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML Sbjct: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 >UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) n=161 Tax=Bacteria RepID=Q5MDG2_ECOLX Length = 207 Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 151/151 (100%), Positives = 151/151 (100%) Query: 20 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 79 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF Sbjct: 1 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 60 Query: 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 139 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF Sbjct: 61 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 120 Query: 140 NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 NGWELDINSRSLIGPDGEQYKLPRSEFRAML Sbjct: 121 NGWELDINSRSLIGPDGEQYKLPRSEFRAML 151 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 76/167 (45%), Positives = 110/167 (65%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+GL Sbjct: 9 PHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDGL 68 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 69 TLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVAQ 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++F GW L+ + R L+ PDG +LP+ EF+ ++ Sbjct: 129 CAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLM 175 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 3/166 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 T++ SE+ F GW LDI R L PDG +L R EF Sbjct: 121 TLSAREASEDE---NQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEF 163 >UniRef50_P38684 TorCAD operon transcriptional regulatory protein torR n=165 Tax=Gammaproteobacteria RepID=TORR_ECOLI Length = 230 Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/166 (43%), Positives = 111/166 (66%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HI+IVEDE VT+ L+S F EGY V GA + +I+ ++L+++DINLP +NGL+ Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LRE++ V ++ +TGR + +D+I+GLE+GADDY+TKP REL +R +NLL R ++L Sbjct: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR-IDL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ Y+F G+ L++ SR + DGE KL R+E+ ++ Sbjct: 123 ARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLV 167 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 115/175 (65%), Gaps = 11/175 (6%) Query: 1 MQTP---HI--LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 MQ P H+ L+V+D+LV + + + F EGY V A DG + L++ +++LV++DI Sbjct: 1 MQAPLESHVTLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDI 60 Query: 56 NLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 NLPG++GL LARELR + A++ ++ +T R+++VDKI+GLE+GADDY+TKPFNPREL R Sbjct: 61 NLPGQDGLSLARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARV 120 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++LL R + + + +S +F GW L+++ R L G+ L R EF + Sbjct: 121 KSLLRR-----SATRPAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVL 170 >UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein TorR n=1 Tax=Rhodospirillum centenum SW RepID=B6ITF9_RHOCS Length = 241 Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P +LIVEDE TR L + F G+ + EA +G + + L +LV++DI LP ++G Sbjct: 7 APLVLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPDEDG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +AR +RE +NV ++ +T R NE D++ GLE G DDY+TKP NPREL RARNLL RT Sbjct: 67 FSIARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLRRTH 126 Query: 123 NLGTVSEERRSVESY-KFNGWELDINSRSLIGPDGEQYKLPRSEF 166 S+ RR+ + +F GW +D+ R LI P+G++ ++ R EF Sbjct: 127 P----SKMRRAEGTVRRFGGWTMDLARRRLIDPEGQEIRVTRGEF 167 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 100/163 (61%), Gaps = 1/163 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP ++GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R + Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 SE + F+GW +D R L P G + L +EF Sbjct: 135 ALNASEN-VGATCFSFDGWRMDFRLRELRNPAGARVALTSAEF 176 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 99/163 (60%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + +Y+F+GWEL++ +R L P G +L EF Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEF 169 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q HILIVED+ R L G+ DG+++ + + +LV+MD+ LPG++ Sbjct: 10 QRDHILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGED 69 Query: 62 GLLLARELREQANVA---LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL L R LR A A ++ LT R E D+I+GLE+GADDY+ KPFNPREL R +++ Sbjct: 70 GLTLTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVM 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R + + V+ Y+F+GW LDI SR L PDGE L R E+ Sbjct: 130 RRARSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEY 177 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D V R TL+S F EGY V A Q+LSE + +L+++DI LPGK Sbjct: 3 MSDIKILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPGK 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RELR ++ V ++ +TG+ +++D+I+GLE GAD+Y+ KPFN RE+ R +NL+ R Sbjct: 63 DGLTLTRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRR 122 Query: 121 TMNLGTVSEERRSVESYKF---NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N ++ ++ +E F W+LD + R L+ D +L EF+ +L Sbjct: 123 VRNQRELA--KKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLL 173 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 4/171 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLG---TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 R L +E + +F GW LD R L+ PDG L +E+R Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYR 171 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 2/150 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HILIVED+ TR L + +GY V EA + +M Q L + L+++DINL GK+G Sbjct: 2 TGHILIVEDDRTTRMRLAAYLREQGYRVSEAENAEQMEQTLHDDPAELLLVDINLDGKDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE R + V ++ LT RD++VDKI+GLE+GADDY+TKPF+ REL R +NLL+R Sbjct: 62 LTITREQRAVSRVGIILLTARDDQVDKIVGLEMGADDYVTKPFDKRELAARVKNLLARIT 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLI 152 ++G + +V + F W D R LI Sbjct: 122 DIGQAPQGAHAV--HDFGPWRFDRIRRRLI 149 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R N Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLEN- 200 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + R SY+F GW LD R L P + +L +EF Sbjct: 201 -NRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEF 241 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 4/173 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ VTR L F GY A D M ++L+ I+LV++DINLPG++ Sbjct: 3 QRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPGRD 62 Query: 62 GLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + LR E A + ++ ++ R EVD+I+GLE+GADDY+ KPFN REL R + LL R Sbjct: 63 GLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLLRR 122 Query: 121 TMNLGTVSEERRSVE---SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + R ++ SY+F+ W L ++R + DG Q +L EFR +L Sbjct: 123 IDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLL 175 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 102/164 (62%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R L + GY+V A DG +M + L+ + LV++D+ LPG++GL L Sbjct: 5 LLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGLSL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+L+ +A++ L+ + + +D+I+GLE+GADDY+ KPF PREL R + +L R L Sbjct: 65 CRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLD 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +EE +++ F G+ L+ R L PDGE LPRS++R + Sbjct: 125 AQAEEPAVMDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVL 168 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI+I+EDE VTR TL + GY V + +L+ +L+++DI L GK+ Sbjct: 3 RAAHIVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDGKD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE R ++++ ++ T ++VD+I+GLE+GADDY+ KPFN REL R +NLL RT Sbjct: 63 GLQITREQRARSDIGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLLRRT 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ R S ++ +F+G+ +R LI PDGE ++ R+EF + Sbjct: 123 E-----AQRRFSRQNVRFHGYAFAFATRQLIAPDGEPIRITRAEFEVL 165 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 103/169 (60%), Gaps = 3/169 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF---RAML 170 + F GW LD ++R + P+G L S++ RA+L Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALL 174 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++G Sbjct: 17 TPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDG 76 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 77 LSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR-- 134 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G + + V F G+ LD R L+ PDG Q L +EF Sbjct: 135 GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEF 178 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 72/169 (42%), Positives = 93/169 (55%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +ER + +FNGW LD R L P + EF +L Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLL 190 >UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ Length = 396 Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ TR L+ + +GY DG + L +L+++D+ L GK+GL Sbjct: 4 HVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKDGLE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R+LR ++N+ ++ LT RD E D+++GLE+GADDY+ KPFNPREL R +++L R +L Sbjct: 64 LCRDLRTRSNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRARSL 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSL 151 + E + +KF+GW LD +R+L Sbjct: 124 PD-NLEPEAAAWFKFSGWVLDAATRNL 149 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 3/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVED+ + L + + G++ GA M +++ +L+++D LPG++G Sbjct: 14 HILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFS 73 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++L R Sbjct: 74 ICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA--- 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ F+GW +D SR L DG Q + +EF +L Sbjct: 131 SYAHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILL 176 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 91/162 (56%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG +GL L Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L R+ Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 V+ + F+GWEL R+L+ P G L +EFR Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFR 196 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 99/161 (61%), Gaps = 3/161 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I IV+DE + ++TL S F+ G+ V A ++ ++++ I+ +++DI LP +GL L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++R ++V ++ +T R E D+I+GLE+GADDY+TKPF+PRE+ R + +L RT Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTR--- 130 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 V++ R +F GW LD+ + L GE +L +EF Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEF 171 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+DE R L +G+ + EA A +L ++ ++DI +PG++GL Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E ++ ++ LT R D+I+GLEIGADDY+TKPF PREL R R++L R Sbjct: 72 LTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V E Y F GW+LD R L PDG + +EFR + Sbjct: 132 PAVDAED---AFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRML 173 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 6/167 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP IL+V+D+ R L E + + V A AE+ Q L+ I+LV++D+ LP + Sbjct: 33 QTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGS 92 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-S 119 GL R+LR + N + ++ LT +VD+ILGLE+GADDY++KPFNPREL R R +L Sbjct: 93 GLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR 152 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R+ V R +Y+F G+ D RS++ P G +L +EF Sbjct: 153 RSETPAPVGASR----AYRFEGFVADPQVRSVVDPTGTAIELTGAEF 195 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 +Q P +L+V+D+ R + A GY V A + AEM ++++ +L+++D+ +PG+ Sbjct: 6 LQPPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGE 65 Query: 61 NGLLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL AR L E+ + A++ L+ N+ D+I+GLE+GADDY+ KP NP EL R R LL Sbjct: 66 DGLSAARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLR 125 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R+ + S++R +V Y+F GW LD+ R L P G L EF Sbjct: 126 RSQSSNEQSDQRGNV--YEFAGWRLDVVRRDLRDPTGIFINLSDGEF 170 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 3/170 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT G ++ +F GW LD ++R L+ PDG L +E+R + Sbjct: 121 RTE--GGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLL 168 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 1/167 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R S + F GW LD+ R L PD E L EF Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEF 167 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 99/165 (60%), Gaps = 2/165 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ + + GY VF A E ++L I+L+++DI LPG+NGL L Sbjct: 8 LLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENGLTL 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R+ + + ++ ++ + ++I+GLE+GADDY+ KPFNPREL R + RT ++ Sbjct: 68 CQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRTEDVE 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T + + + ++F+GW+LD +R L PDG L SEF A+L Sbjct: 128 TAAAPK--AQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALL 170 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 8/170 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HI +++DE+ L + ++ G+ V + +G + ++ +LV++D+ LPG++G Sbjct: 6 HIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR---- 120 +AR +RE L+ +TGR + VDK++GLE+GADDY+TKPF+ REL R + +L R Sbjct: 66 IARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPD 125 Query: 121 TMNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + R S + +F GW+LD+ +RSL P G+ L EF Sbjct: 126 DAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEF 175 >UniRef50_B8IVD0 Two component transcriptional regulator, winged helix family n=10 Tax=Alphaproteobacteria RepID=B8IVD0_METNO Length = 245 Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/171 (39%), Positives = 103/171 (60%), Gaps = 7/171 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + PHILI +D+ R L E+EG+ V A G M + L+ I+LV++D+ L G++ Sbjct: 3 EPPHILITDDDPRIRQMLSRYLESEGFRVSTAESGTAMRKALASEKIDLVLLDLVLAGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL LARE+R + V ++ +TGR + +D ++GLE+GADDYI KPF RE+ R R++L R Sbjct: 63 GLELAREIRASSRVGIIMVTGRSDIIDMVVGLEVGADDYIAKPFQLREVLARTRSVLRR- 121 Query: 122 MNLGTVSEERRSV------ESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + +E ++V E F GW LDI+ R L+ P+G++ L EF Sbjct: 122 LQPSASTETAKAVGPSSRAEVIGFEGWRLDISRRELMSPEGQEVPLTTGEF 172 >UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKJ7_9BACT Length = 223 Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 57/120 (47%), Positives = 81/120 (67%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ILIVEDE + ++ + EG+ A+ A+ + L+E INL+I+DI LP NG Sbjct: 2 PKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R+LR N+ ++ LT R +EVD+I+GLEIGADDY+TKPF+PREL+ R +++L RT N Sbjct: 62 DFCRKLRASQNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLRRTQN 121 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 93/167 (55%), Gaps = 1/167 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G+ Sbjct: 28 PHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGI 87 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 88 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T E S Y+F GW L+ + R L+ P G + L E+ +L Sbjct: 148 NETPGRE-SSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLL 193 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 3/163 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK-NGL 63 IL VED+ L F +GY V A DGA M + L+ +LV++D+ LPG+ +G Sbjct: 25 RILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGREDGY 84 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +LAREL+++ ++ ++FL+ R + +D+I+GLEIGADD++ KPF PREL R R +L R + Sbjct: 85 VLARELKKERDIGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRR-LP 143 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 GT + R F+GW LD+++R L G L EF Sbjct: 144 AGT-ARPRGEGRRIGFDGWLLDLDARVLRDAQGGVQNLTTQEF 185 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 5/167 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++GL Sbjct: 6 HIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 66 LCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRAT-- 123 Query: 125 GTVSEERRSV--ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 SE S+ S +F W L+ R L+G DG L +EFR + Sbjct: 124 -PASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLL 169 >UniRef50_A4TVF9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVF9_9PROT Length = 252 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 3/163 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P +++++D+ VTR+ + F EG+ V EA AE +L +L+ +DI+LP NG+ Sbjct: 18 PKLVVLDDDPVTRSMIARYFSDEGFHVREAPSAAECRTLLKASPPDLLFVDIHLPDANGI 77 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 A+E+R + V ++F+T RD+E+D+++GLE DDY+TKP N REL R R+LL R+ Sbjct: 78 TFAQEIRASSQVGIIFVTQRDSEIDRVVGLESAGDDYVTKPINLRELMARTRSLLRRSKQ 137 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + RSV F + +D+ R L G+ L R EF Sbjct: 138 -SSGQPSHRSV--ITFGAYVMDMTRRELSSKGGKLIPLTRGEF 177 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 95/157 (60%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ + E + V A G M QIL + I++V++D+ LP ++GL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L R +L Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKL 161 + SY F+GW +D SR+L P G + L Sbjct: 126 PETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVL 162 >UniRef50_C6QH06 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH06_9RHIZ Length = 242 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/166 (42%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL+V+DE R L++ FE EGY V EA D A L+E ++LV +D+ L ++G Sbjct: 2 TTKILVVDDEPEIRRLLRTCFEREGYAVAEAADAAATRAALNEDIVSLVTLDLALGQEDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT- 121 L LARE+R + +V ++ ++G+ + VD+I+GLEIGADDYI+KPFN RE+ R R++L R Sbjct: 62 LSLAREIRAKHDVPIVMVSGKGDTVDRIVGLEIGADDYISKPFNLREVLARVRSVLRRHD 121 Query: 122 -MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 N + + E Y+F GW LD SR L +G +L +EF Sbjct: 122 GGNRAASTTSSPAHEIYEFAGWSLDATSRELKDENGVSRELTTAEF 167 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L R Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + + F W+LD +R L+ G L +E+R + Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLL 172 >UniRef50_D0XTW5 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW5_9CAUL Length = 241 Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 4/163 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED++ R + + + V EA D A +I++E I + ++DINLPG++GL Sbjct: 11 PEILLVEDDVELRREMAAYLRDNDHLVHEAGDAASARKIMAERAIQVAVLDINLPGEDGL 70 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R L A++ LT + +D+ILGLE+GADDY+ KP PREL R + +L R Sbjct: 71 SLCRSLAGDGGPAILMLTALGDPIDRILGLELGADDYVVKPIMPRELLARVKAMLRRR-- 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R Y+F + LD+ +R L P+G L RSE Sbjct: 129 --PPGPAARKTNIYRFADFRLDLAARQLRAPNGAVLLLTRSEL 169 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 6/151 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP Sbjct: 14 VKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKI 73 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 74 DGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSL 151 G V + + Y+F +DI SR++ Sbjct: 134 QEK-GEVKK-----DEYQFRDLMVDIGSRTV 158 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/165 (36%), Positives = 94/165 (56%), Gaps = 4/165 (2%) Query: 3 TPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +PH +L+++D+ R+ L F + V DG + L + ++LVI+D+ LPG + Sbjct: 2 SPHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDD 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R+ R+ + V ++ LT +E DK++GLE+GADDY+ KPF+ REL R + LL R Sbjct: 62 GFTLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRRN 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + E R + FNGW+LD+ R LI P + L EF Sbjct: 122 QIVQSPGTEARFL---CFNGWKLDLVRRELIDPQKQSEPLSGIEF 163 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + + F W+LD +R L+ G L +E+R + Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLL 172 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELREQANVA--LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + A ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + + + F W+LD +R LI DG L +E+R + Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLL 173 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 6/163 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGL 63 +L+V+D+ TRN LK+ E Y+V A DGA + + +++LVI+D+ LP +G Sbjct: 14 LLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDGF 73 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R M Sbjct: 74 TLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKA-IHRRMQ 132 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 LG V KF G+ +D+ R L P G+ L +F Sbjct: 133 LGAPGA---PVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDF 172 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 6/170 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+VED+ R + + G+ DG EM + + +L++MD+ LPG +G Sbjct: 19 APYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR+ + V ++ ++ R E+D++LGLE+GADDYI KPF +EL R R +L R Sbjct: 79 FDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-- 136 Query: 123 NLGTVSE--ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 G V+E + E+ F GW++D+ R L P G L +E+ +L Sbjct: 137 --GPVNEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLL 184 >UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW86_9RHOB Length = 242 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 1 MQTPH--ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP 58 M+ P I +VED+ + R + Y+V A ++ + ++ D+++ ++D+ LP Sbjct: 1 MKLPQKTIALVEDDGLARAEICEYLRYNNYEVLSAGTQSDFEKKIANADVDIFLIDLGLP 60 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 +GL + R L+ +AN ++ L+GR +++DK++ LE+GADDYITKPFNPRE+ R +LL Sbjct: 61 DGDGLDVIRGLKGRANCGIIVLSGRSDDIDKVVCLEVGADDYITKPFNPREMLARVHSLL 120 Query: 119 SRTMN---LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R N +S E + F W LD N+R L D + L RSEF Sbjct: 121 RRLENKNETADLSTESTTDSIISFLDWSLDTNTRQLFDADNIETPLTRSEF 171 >UniRef50_B0SB02 Sensor protein of a two-component response regulator n=7 Tax=Bacteria RepID=B0SB02_LEPBA Length = 225 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 85/119 (71%), Gaps = 1/119 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++EDE + T++ EAEG+ + A G + Q+L++ DI+L+++DI LP ++G Sbjct: 3 KILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLAD-DISLILLDIGLPDQSGFE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + + +R+ A++ ++FLT R +E+DK+LGLEIGADDYI KPF+PREL R R +L RT N Sbjct: 62 VLKSIRKAASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQN 120 >UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHY5_9SPHN Length = 242 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 3/165 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R+ + E Y + A AE+ + L E ++L+++D+NLP +GL+L Sbjct: 12 VLVVDDDADIRDLIIGQLHQENYRLLAAASLAELRRTLKEEAVDLIVLDLNLPDGDGLML 71 Query: 66 ARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 RELR E A+V ++ +T R + +D++LGLE+GA+DY+TKPF PREL +R RNLL R Sbjct: 72 CRELRAEGADVQIIMVTARGSAIDRVLGLELGANDYLTKPFEPRELLVRIRNLLRR--GR 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + + +F W LD+ R L+ PD L +EFR + Sbjct: 130 GDPTARPAAARFARFGPWRLDLQQRRLVAPDDSLVMLSSAEFRLL 174 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/162 (41%), Positives = 102/162 (62%), Gaps = 10/162 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +GL + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT G Sbjct: 65 CRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT---G 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEF 166 T++++ FNG L IN S + +GE+ L E+ Sbjct: 122 TLNDK----NILDFNG--LTINKLSHEVKLNGEELLLSPKEY 157 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLGT---VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L +SE R + F W LD +R L+ D L +E+R + Sbjct: 126 MLPPNLLISETGRLL---AFGRWRLDTTARHLLDEDDTMVALSGAEYRLL 172 >UniRef50_C3JXL3 Oxidative stress related two component system, transcriptional regulator n=3 Tax=Pseudomonas RepID=C3JXL3_PSEFS Length = 247 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 80/146 (54%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D R L + +DV A D A M Q+L ++V++D+ LP +G L Sbjct: 12 VLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFEL 71 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +L ++N ++ LT RDN D++ GL++GADDY+TKPF PREL R ++L R Sbjct: 72 CNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSRNT 131 Query: 126 TVSEERRSVESYKFNGWELDINSRSL 151 + R +Y+F GW + +L Sbjct: 132 GPAAPRSGARAYRFGGWHFSVTGATL 157 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 7/175 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAML 170 N+ + + + W N +SL I G+ +L R E+R + Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATW--TCNPQSLQIQYHGQILQLTRYEYRLLF 174 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/167 (35%), Positives = 92/167 (55%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 2 PHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 62 SLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTAE 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + F GW LD+ R L D L EF +L Sbjct: 122 LEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLL 168 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 5/163 (3%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 LIV+D++ R L + TDG +M Q L++ ++V++D+ LPG++GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 R LR +++ ++ LT R D+I+GLE+GADDY+ KPF PREL R + +L R + Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD--E 150 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S++R ++ +F+ W L+ R L DG L +EFR + Sbjct: 151 RSDQRTTI---RFDAWRLNSVLRQLTAADGLVVPLSNAEFRLL 190 >UniRef50_Q1GMB0 Two component transcriptional regulator, winged helix family n=7 Tax=Alphaproteobacteria RepID=Q1GMB0_SILST Length = 244 Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P I IV+D+ R TL ++ G++ D H + ++L ++D+ L G++GL Sbjct: 12 PVIAIVDDDAQVRETLSALMHESGFESVCCPDIETFHALGDPPPVDLALIDLRLRGESGL 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 LA LRE+ + ++ LTG +E+DKI+GLE GADDY+ KPFNPREL R R +L R + Sbjct: 72 TLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYGH 131 Query: 124 LG--TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 TV+ +R + F +D+++R L+ GE+ L +E+R + Sbjct: 132 ASARTVTSGKRQI---TFGEKRIDLDARRLLDSAGEEVPLTNAEYRLL 176 >UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria RepID=Q2W9M0_MAGSA Length = 250 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 4/163 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ++++ED+ VTR+ + F EG++V EA AE +L + D++L+ +DINLP NG+ Sbjct: 19 PSLIVLEDDPVTRSMIGRYFSNEGFEVREAASAAECRVLLKDRDVDLLFVDINLPDANGI 78 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 ++E+R ++ V ++F+T D+E+D+++GLE+ DDY+TKP N REL R+R LL R Sbjct: 79 SFSQEIRAKSPVGIIFVTQLDSELDRVVGLEVAGDDYVTKPINLRELMARSRALLRRRKL 138 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 E R V F + LD+ R L G+Q L R EF Sbjct: 139 DREQVERRNVV---AFGAYILDLTRREL-SKSGQQIVLTRGEF 177 >UniRef50_C7DBU8 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DBU8_9RHOB Length = 149 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 77/116 (66%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +D+ R+ L+ E +DV E DGA +SE+ +L+++DI +P +GL + Sbjct: 4 ILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAVSEHAPDLIVLDIGMPEMDGLQV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +ELR ++FLT R +E+D+I+GLE+GADDY+TKPF+PRE+ R + +L R+ Sbjct: 64 CQELRRTHATPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAILKRS 119 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 10/171 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSR-- 145 Query: 125 GTVSEERRSVES-----YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ RR + +F W L+ R L+ + L +EFR +L Sbjct: 146 ---ADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLL 193 >UniRef50_A8GAJ9 Two component transcriptional regulator, winged helix family n=54 Tax=Gammaproteobacteria RepID=A8GAJ9_SERP5 Length = 246 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 99/171 (57%), Gaps = 4/171 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPGKNG 62 P +LIV+D+ + L + + V G+E +LS+ DI LV++D+ LP NG Sbjct: 3 PAVLIVDDDPAICDLLCDVLNEHVFSVHACHRGSEALTLLSQQPDIALVLLDLILPDTNG 62 Query: 63 LLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 LL+ +++ R + ++ ++ LTG +E D ++GLE+GADDYI KPFNPR + RA+ +L RT Sbjct: 63 LLVLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLRRT 122 Query: 122 --MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + L + R E ++FNGW LD +L P + L + E+ +L Sbjct: 123 GALALEPATAGRNKPEGWQFNGWCLDTARCTLHNPQRQPVDLTQGEYGLLL 173 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 7/163 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG +G+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 S R F E+D ++R G+ +L +EF Sbjct: 123 KPVKSSVMR------FTHVEIDPDAREARAA-GQLLELTPTEF 158 >UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RXJ1_9GAMM Length = 219 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 9/153 (5%) Query: 24 EAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 E EG+DV AT +I S DI++V++D+N+PG +G +A+EL + ++F+TG Sbjct: 2 EKEGFDVHSATSSPSALEIFSSLDIDIVLLDLNIPGTHGFEIAKELLSLKKIGIIFITGS 61 Query: 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVES------Y 137 +VDKI+GLE+GADDYI KPF+ REL R R++L R L V++ ES Sbjct: 62 TEQVDKIVGLELGADDYIQKPFDFRELLARIRSVLRR---LDHVTDNSSGSESEAGHLKA 118 Query: 138 KFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 F W+LD ++ + G D +L E+ +L Sbjct: 119 HFGNWQLDCLTQEISGKDNATPELTSHEYFILL 151 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 1/155 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAE-MHQILSEYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G + +E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPD 155 + V + Y+F + LD SR L D Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKD 157 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 54/118 (45%), Positives = 75/118 (63%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +GL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA 119 >UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HVW3_AZOC5 Length = 226 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 11/161 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVED + + + E G A GAE+ L +++++D+NLP +G+ L Sbjct: 5 VLIVEDAPESLEMISTFLEENGMRTVRAASGAELKARLQSVQPDIILLDVNLPDADGIAL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 AR+LR A+ L+F+T RD++ D + GL+ G DDY+TKP NPR L R R++L R Sbjct: 65 ARQLRLGASFGLIFVTARDSDEDVLAGLDAGGDDYVTKPINPRTLLARIRSVLRRA---- 120 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R V F+GW LD+ R L P G+ +L EF Sbjct: 121 -----REPV--ITFDGWILDVVRRELFRPTGQLVELTAGEF 154 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 9/169 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGLL 64 +LIVED+ R+ ++ EG + DG ++LS+ +LV++D+ LPG +G+ Sbjct: 4 VLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGIS 63 Query: 65 LARELREQAN----VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + RELRE + V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R L R Sbjct: 64 VCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S E+R +E F G E+D+ R + GEQ +L EF + Sbjct: 124 QRMNAQASPEQRKLE---FPGLEIDLLRRRVTA-RGEQVELTAREFEVL 168 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 9/162 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGLL 64 +L++EDE R+ LK+ E GY V A +G E + +E DI ++++DI LP +G Sbjct: 5 VLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGWS 64 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 65 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 S++ E + G +D++SR + DG++ +L EF Sbjct: 124 ---SQDDGKTE---YQGIVMDVHSRE-VTVDGKKIELTPKEF 158 >UniRef50_Q11E93 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=Q11E93_MESSB Length = 268 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 5/163 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R + G+ V A DG EM LS+ I+L+I+D+NLPG++GL L Sbjct: 34 LLIVDDDDDIRTLVAEQLAEAGFRVELAADGVEMFDHLSKKSIDLIILDVNLPGEDGLSL 93 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +++N+ ++ LT R +D+++GLE+GADDY+ KPF PREL R R +L R G Sbjct: 94 CRRHGQKSNIPVIMLTARGALIDRVIGLEVGADDYLAKPFEPRELLARIRCVLRRA---G 150 Query: 126 TVSE--ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 E + R + +F GW LD +R L+ G L +EF Sbjct: 151 AAVEPVDARRAKRARFRGWTLDFENRCLVDRAGRVVVLSGNEF 193 >UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4W5_9PROT Length = 233 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R + + GY V +A D A M L+ I+LV++D+NLP +G+ L Sbjct: 7 ILVVDDDETVRALIAASAAKAGYRVEQAEDAAGMRAWLATGQIDLVLLDVNLPDGDGISL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR ++VA++ +T R D+ LG+E GADDY+ KP PREL R +++L R L Sbjct: 67 TRDLRAHSDVAVIMVTERGGPDDRALGIETGADDYLAKPVYPRELLARVKSVLDRRAGLR 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R +F GW +D+ +R+++ G L +EF Sbjct: 127 GAGTANR----LRFAGWCMDLTARAVLDTLGRAADLTPAEF 163 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D + L E + V A +G EM + L +L+I+DI LPG Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L ++LR Q+ V ++ LT ++ D+I GLEIGADDYITK FNPREL R + LL R Sbjct: 69 DGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRR 128 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + E + KF W D R L DGE L +++ Sbjct: 129 STFSHSQGE-----RTLKFMDWTFDTLKRQLKHEDGEVVSLSSADY 169 >UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rhodospirillum centenum SW RepID=B6IYL9_RHOCS Length = 262 Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 25/194 (12%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ R + + G+ V EA G+ +++++ +L I+D+ LP Sbjct: 1 MSIARILLVEDDDAIRALVIRVLSGAGFTVEEAPSGSRAMEVVADTRPDLAIVDLGLPDM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + RELR++ ++ L+GR + +++I+GLE+GADDY+ KPF PREL R +++L R Sbjct: 61 DGLAVVRELRQRLRCGVIILSGRSDPMERIIGLEVGADDYVPKPFEPRELLARVKSVLRR 120 Query: 121 ------------------------TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG 156 T V + Y+F GW LD LI PDG Sbjct: 121 LEPAGPDRPAPPAPAAPAPPLPENTPATAPVGPDGGG-PVYRFEGWTLDSRGHMLIRPDG 179 Query: 157 EQYKLPRSEFRAML 170 L EF +L Sbjct: 180 GHEDLTTGEFTLLL 193 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + L VS + + G EL+ +++ +I DGE K+ EF+ + Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVI-LDGELIKVTPIEFKIL 169 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++GL + Sbjct: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN- 123 R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R N Sbjct: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 Query: 124 -LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G S+E + F ++L++ +R + D E L EF Sbjct: 127 LPGAPSQEEAVI---AFGKFKLNLGTREMFRED-EPMPLTSGEF 166 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 81/128 (63%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G L Sbjct: 4 ILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWEL 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R + Sbjct: 64 CGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQVA 123 Query: 126 TVSEERRS 133 ++E S Sbjct: 124 IQAKESLS 131 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 79/116 (68%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 6/174 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVES----YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T L V + + VES + G EL+ N++ + DG+ K EF+ + Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKE-VNIDGKYIKTTPIEFKIL 173 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 V +E ++ ++ F +D++ R +I GE+ EF Sbjct: 150 LQPKPKVEDE-AALRTFVFEQLTIDLDKREVIVA-GEKVSFRPKEF 193 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 9/172 (5%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M P +++V+D+ R+ + GY V A + +L +++I+D +PG Sbjct: 1 MNAPARVIVVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL + R L+ +A + ++ L+ + D+++GLE+GADDY+ KPF+PREL R R LL Sbjct: 61 EDGLSVCRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLR 119 Query: 120 RTMNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R L T V+ E R F GW L R LI PDG + L R EF +L Sbjct: 120 RQDKLRTQVASEMR------FAGWRLLPEQRRLIAPDGAELVLSRGEFSLLL 165 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGE 157 + LG+ + + +++ ++K G +DI+ + D E Sbjct: 121 FLVLGSNANTQEKTILTFK--GLTIDISKYIVTVGDKE 156 >UniRef50_B4WZT8 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZT8_9GAMM Length = 225 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 6/166 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P +LIVEDE L E E + V T G + ++ ++LV++D+ LP NG Sbjct: 2 PAVLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMNGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++LR+ + + ++FLT R +EVD+ILGLE+G DDY+TKPF+PRE+ R R +L R Sbjct: 62 DVLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKR--- 118 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 LG S+ +++ K W++D + + E L RSE+R + Sbjct: 119 LGPKSDA--DIDTNKTTLWQVDDSGLRVFFRHTE-LSLTRSEYRIL 161 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 75/115 (65%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG +G Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL R Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRR 121 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 76/116 (65%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVEDE + L GY +G E+ + +L+++D+ LPGK+GL Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + RE++E +N+A++ +T R +E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRR 118 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 5/145 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R+ + E G +G E I+L+I+DI +P +G Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++R+ + + ++FL+ RD E+DK+LGLEIG DDY+TKPF+PREL R + +L R+ Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDIN 147 N E RR++ F EL ++ Sbjct: 122 NEAE-PERRRAI----FVAGELSLD 141 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 3/145 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P +G Sbjct: 4 NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L RT L Sbjct: 64 VCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 125 GT---VSEERRSVESYKFNGWELDI 146 T VS++ +ES + W+ I Sbjct: 124 NTKIQVSDDIIRIESMIIDKWKHKI 148 >UniRef50_A9DQD6 Probable two-component response regulator protein n=2 Tax=Rhodobacteraceae RepID=A9DQD6_9RHOB Length = 247 Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 98/174 (56%), Gaps = 5/174 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D++ R L+ E +GY V EA + +LV +D+NL Sbjct: 1 MAEKKILVVDDDVRIRTLLRRCLEGDGYRVVEAESAQSVRDAFGAAAFDLVTLDLNLGAD 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-- 118 NGL + RELR +V ++ +TG+D+ +D+++GLE+GADDY+TKPF+ RE+ R R++L Sbjct: 61 NGLDILRELRRTHDVPIVMVTGKDDVIDRVVGLELGADDYLTKPFHVREVLARVRSVLRR 120 Query: 119 -SRTMNLGTVSEERRSVES--YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 SR M T + + ++ +G ++ ++ L+ GE L ++F+ + Sbjct: 121 SSRPMPAETTDRDSDTSDAPWLSLDGLKIRLDRMLLVDRQGEDCDLTTADFKLL 174 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 97/165 (58%), Gaps = 13/165 (7%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK-N 61 H+L+VED+ + L F E +V ++G + LS +D + LVI+D+NLPG+ + Sbjct: 4 HVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDA---LSAFDASVTLVILDLNLPGRLD 60 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +AR +R ++ V ++ L+ RDNE+D++ GLE+GADDY+TKPF+PREL R R + R Sbjct: 61 GLEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR- 119 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 V S + FNG + D +R ++ DG L EF Sbjct: 120 -----VEANPSSAAALSFNGVDWDPRARQVLR-DGVPVALTNREF 158 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 6/161 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P +GL Sbjct: 8 ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLTA 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT + Sbjct: 68 CMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF- 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 S+E+ + ++ +DI R+ + G+ L R EF Sbjct: 127 --SKEQEA--TFDVGILSIDIEGRA-VSVKGKTVNLTRKEF 162 >UniRef50_A3PND2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhodobacter sphaeroides RepID=A3PND2_RHOS1 Length = 233 Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 91/164 (55%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL ++DE ++S E G+ V A A+ ++ ++ ++L ++D +LP NG Sbjct: 2 VPCILALDDEAAILTIVRSTLEQRGFRVVTAKSLAQFRKVDAQEQVDLYLIDTSLPDGNG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR+ ++ ++ L + +E + +LGLE+GADD + KPF REL R + RT Sbjct: 62 LSLLRELRKVSDRGIILLAPQRDEAEGVLGLELGADDTLLKPFRERELAARVGAVFRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 T R ++F+G+ L + +R L PDG + +L SEF Sbjct: 122 RPATSLPAGRPGIDHEFDGYGLSLQARKLWAPDGREVELTTSEF 165 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/115 (41%), Positives = 82/115 (71%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ + Sbjct: 5 VVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119 >UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY91_AZOSE Length = 236 Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 79/117 (67%), Gaps = 1/117 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R L+ F A+GY A + + +I + +++ ++DI++PG++GL L Sbjct: 7 ILIVDDEPGVREVLEEYFVAQGYAALCAANAGDAREIAAGSPVDVALVDISMPGEDGLSL 66 Query: 66 ARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 R LRE A +A++ LT VD+I+GLE+GADDY++KPF+PREL R +++L RT Sbjct: 67 TRYLREHYARIAIVMLTSAGTVVDRIVGLEMGADDYVSKPFDPRELLARVKSVLRRT 123 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 76/121 (62%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ +DE R+ ++ E +GY V A DG + I+LVI+D+ +P Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R+LRE+ +V ++FL+ R E D+ILGLE+G DDY+TKPF+PREL R + +L R Sbjct: 61 DGLNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 Query: 121 T 121 Sbjct: 121 V 121 >UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7Y1_9RHOB Length = 298 Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 1/162 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LI++D+ + LK FE+ G V + G EM Q L I+ VI+D +PG N Sbjct: 58 HLLIIDDDAKIVSFLKGFFESHGIKVSTGSSGNEMWQALESEKIDFVILDALMPGTNENT 117 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L EL+ Q+NV + +T D E + I+GLE GADDY+ PFNP EL R R + R + Sbjct: 118 LCSELKSQSNVPTVLMTALDGETNIIVGLEAGADDYVVNPFNPCELLARMRAVSRRNNSN 177 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 ++S+ S + F+ ++ D R L + L R+EF Sbjct: 178 FSMSQTNIST-IFSFSSFQFDTRRRELRASENVLVHLSRTEF 218 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R L++ G+ V DG L +LVI+D+ LP ++G L Sbjct: 27 ILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFSL 86 Query: 66 ARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R +R+ QA V ++ LT +E D+++GLE+GADDY+ KPF+PREL R + LL R+ Sbjct: 87 CRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRS- 145 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G + F+ W LD S L DGE+ L ++F Sbjct: 146 EFGQAAP---GSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADF 186 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 4/121 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDG--AEMHQILSEYDINLVIMDINLPGKN 61 PHILIVEDE +TL + EG+ + G A HQ S D L+I+DI LP + Sbjct: 5 PHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPAD--LIILDIGLPDIS 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G ++LR + V +MFL+ RD E+D+++GLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 63 GFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRM 122 Query: 122 M 122 + Sbjct: 123 V 123 >UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphaproteobacteria RepID=Q7CXM1_AGRT5 Length = 237 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 5/147 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ RN L+ +GY V A D AE + + +L+I+D+ +PG+NGL Sbjct: 17 HLLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVMMPGENGLS 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E +V ++ LT R +I GLE GADDY+ KPF+PREL +R N+L R Sbjct: 77 LTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSL 151 S + +E F + I R L Sbjct: 133 -NTSPDTPKIEQIMFGPYSFSIPKREL 158 >UniRef50_A1SYE4 Two component transcriptional regulator, winged helix family protein n=4 Tax=Proteobacteria RepID=A1SYE4_PSYIN Length = 246 Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 4/164 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE+ R + + GY DG M + + +L+I+D+ L ++GL+L Sbjct: 9 ILIVDDEVDVRILVSDVLNQAGYPCVAVADGNTMFGEMKKALFSLLIIDLRLKNEDGLVL 68 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR---TM 122 AR +RE +N+ ++ LTG+ +E D+IL LEI ADD++ KPFN REL R L R T+ Sbjct: 69 ARSVRENSNIPILMLTGKGSETDRILSLEIAADDFLMKPFNIRELVARVNALQRRAVMTI 128 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 N ++ S E F W LD+++R L GE L EF Sbjct: 129 N-NDPADLSDSHECLSFGHWILDLSARELRNSSGEVTLLTYGEF 171 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 8/163 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ N +K+ E E ++V A M + L +L+++DI LP +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++L R+ + ++FLT R +++D ILGLE+GADDYITKPFNPR L R + +SR Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKA-VSRRYE 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 +G ++R V K E+D+NS S+I DG++ +LPR EF Sbjct: 121 MG--PKDRNVV---KLGDIEIDMNSYSMIK-DGKKEELPRKEF 157 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 4/130 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDG----AEMHQILSEYDINLVIMDIN 56 M PHILI+EDE +L + E+E + T A + ++LV+MD+ Sbjct: 1 MSVPHILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVG 60 Query: 57 LPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 LP G ++LR + V ++FLT R +E+D+++GLEIGADDY+ KPF+PREL R + Sbjct: 61 LPDMTGFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKA 120 Query: 117 LLSRTMNLGT 126 +L RT +G Sbjct: 121 ILKRTRQVGA 130 >UniRef50_A0Z5Z4 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5Z4_9GAMM Length = 239 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 103/170 (60%), Gaps = 9/170 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 +LIVED+ + + L+ +F G FEA+ A +H + +Y LV++D+ LP +G Sbjct: 4 VLIVEDDEILGDELRDVFTQWG---FEASLVASVHDFWANVEDYQPQLVVVDLTLPDGSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R ++++ ++ ++GR +E+++++ +E GADDY+ KPF+ RE+ R R L+ RT Sbjct: 61 VDIIRDVRSKSDIGIIVMSGRSDEIERVVCIETGADDYVVKPFSSREMVARIRQLMYRTG 120 Query: 123 NLG-TVSEERRSVES--YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + T S ++E+ +KFN + D ++ +L P G++ L EF + Sbjct: 121 GVAYTPSAAVNTLETGRFKFNDYVFDTSAMALTDPGGDEVSLTTLEFSVL 170 >UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudomallei group RepID=A3NL94_BURP6 Length = 245 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ++P +L+VED+ R L + G V A + + + +V++D+ LP + Sbjct: 6 RSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + RE L+ +TGR E D+I+GLE GADDY+ KP++ RE+ R R L R Sbjct: 66 GIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRRA 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 T R +Y+F+GW L++N+R L+ D ++ L EF Sbjct: 126 EPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEF 170 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 97/166 (58%), Gaps = 9/166 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 65 LARELREQANV--ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR Q+N+ ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R + Sbjct: 82 ICRRLR-QSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 123 N--LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G S++ VE F W LD+++R+L +G+ L EF Sbjct: 141 REVPGAPSQQ---VEVVSFGSWALDLSTRTLTR-EGQVVTLTTGEF 182 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 92/165 (55%), Gaps = 6/165 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 TV + + ELD SRS + G+ L R EF Sbjct: 124 HRF-TVDQS----ATLTIGKLELDTESRS-VHVSGKPISLTRKEF 162 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 9/155 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q PHIL+V+D R+ + E G A++ EM L +L+I+D+ +PG++ Sbjct: 6 QLPHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL AR L ++ L+ E D+++GLEIGADDY+ KPF+PREL R + +L R+ Sbjct: 66 GLSAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRS 125 Query: 122 MN----LGTVSEERRSVESYKFNGWELDINSRSLI 152 GT+ + F GW LD ++R L+ Sbjct: 126 ERREPLAGTLGGRK-----LGFAGWMLDTDTRDLV 155 >UniRef50_C6WIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WIA6_ACTMD Length = 244 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 6/151 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + T +L+VED R ++ +DV A DG +++ ++D +V++D+N+PG Sbjct: 15 VSTSKVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGP 74 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + R LR+ + ++ LT R +EVDK++GL GADDY+TKPF+PREL R +L R Sbjct: 75 DGLEVCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSL 151 + + RR V E+D+++RS+ Sbjct: 135 P-RIPAARDSRRVVGPV-----EVDLDARSV 159 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 94/164 (57%), Gaps = 3/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG +GL + Sbjct: 5 ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLTI 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 65 CQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKFS 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V E+ +V + +G +++N+ + +Q L +EF + Sbjct: 125 GVKEQNENVIVH--SGLVINVNTHECY-LNEKQLSLTPTEFSIL 165 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++D+ + +EG+DV DG L + L ++DI +PGKNG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ +++ ++ LT R E+D+ILGLE+GADDY+ KP NPREL R R +L R+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS---- 118 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 +E + +F E SR+ I GE L +E+ Sbjct: 119 DTQQESDDKQETRFGSLEWHPQSRT-ITEHGEPVDLTATEY 158 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 1/165 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP +G+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL RT + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E + + +F E+D ++ ++ D ++ L E+ ++ Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLA-DNQEVNLTPKEYELLI 168 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/119 (43%), Positives = 77/119 (64%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE RN L+ EGY+V EA DG + ++ E +LVI+D+ LP K+G + Sbjct: 9 ILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWSI 68 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 RE+++ ++ LT RD+ D++ G E+GADDYITKPFN + L R ++LL +T N+ Sbjct: 69 LREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNNM 127 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 82/125 (65%), Gaps = 2/125 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + HIL+V+D+L R+ +++ G+ V DG + L +++L+I+D+ LP ++G Sbjct: 6 SAHILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT- 121 L + + LR + ++ LT R +EVD+ILGLE+GADDY++KPF+PREL R + +L RT Sbjct: 66 LQICQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTK 125 Query: 122 -MNLG 125 MN G Sbjct: 126 PMNRG 130 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 4/161 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G+ Sbjct: 4 ILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVKA 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R LG Sbjct: 64 TKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKELG 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + +++ E Y G L+ +S L+ DG++ L E+ Sbjct: 124 S---QQKDQEVYMLGGITLN-DSLKLVNVDGKEISLTPVEY 160 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 8/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG +GL Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGLEF 84 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R Sbjct: 85 LRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR----- 139 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S E + ELD +R+ + GE+ L RSEF M Sbjct: 140 --SSEPLPNAVLRAGELELDPTTRTFLV-RGERVDLTRSEFELM 180 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 79/116 (68%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+++VEDE+ + ++ EA G++V DG E ++ + NL+I+D+ +P +GL Sbjct: 3 HVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + R++REQ+++ ++ +T R E+D++LGL +GADDY+ KPF+P+EL R + +L R Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILI++D+ + + A +G + Q+L + + +L+I+DI LPG +GL Sbjct: 12 HILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLD 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 72 LCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQ-- 129 Query: 125 GTVSEERRS---VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 G +S+ER+ ++ F+ W LD N+ SLI D L + E+ +L Sbjct: 130 GDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLL 178 >UniRef50_C7PII2 Two component transcriptional regulator, winged helix family n=5 Tax=Sphingobacteriales RepID=C7PII2_CHIPD Length = 235 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 8/163 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE + LK E EGY+V +G A + + +EY +L+I+DI LP +G+ Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEY-FDLIILDIMLPEMDGIA 67 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +R Q N V ++FL+ +++ D++LGL+ G DDY+TKPFN EL +R L+ + Sbjct: 68 VCENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLIVKNKR 127 Query: 124 LGTVSEERRSVES-YKFNGWELDINSRSLIGPDGEQYKLPRSE 165 + +++ SV + Y F E+D ++ IG DG+ Y+L + E Sbjct: 128 I----QDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKE 166 >UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF57_HELMI Length = 277 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 78/118 (66%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I I +DE ++ E EG++ T+G ++ ++ +LVI+DI +PG NGL + Sbjct: 4 IFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNGLDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR ++V ++ ++ +D+E+D+ILGLE+G DDY++KPF+PREL +R +N+L R + Sbjct: 64 CKRLRRDSDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILRRVWH 121 >UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNN8_9RHOB Length = 240 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 9/163 (5%) Query: 6 ILIVEDELVTRNTLKSI---FEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IV+DE N L FE EG VF A+M LS + I+D+ LP G Sbjct: 13 VFIVDDEPEIGNLLLDALLQFEMEG-KVFAT--AAQMLTALSLETPDACIVDLGLPDMEG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + L E+R +++V ++ L+ R + D+++GLE+GADDY+ KPF+PRE+ R R++L R+ Sbjct: 70 MALINEIRRRSSVPIIVLSARGHSTDRVMGLELGADDYVVKPFDPREVVARIRSILRRSS 129 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSE 165 +L + ++ SV+ +F GW S L P+GE+ L E Sbjct: 130 DLPS---KKASVDCARFEGWSYQPASHCLTSPEGEETFLSTGE 169 >UniRef50_Q1NBG5 Two component transcriptional regulator, winged helix family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NBG5_9SPHN Length = 235 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 3/166 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +P ILI E R+ + E G+ V A ++ L+ + V++D L G Sbjct: 1 MNSPLILIAETRQDLRSATRDHLEHSGFRVLPALTANDIFSALTTTPVRAVVLDSALRGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R++RE+++V ++ + +EVD+++GLE+GADDY+ KP++ REL R R +L R Sbjct: 61 DGLDLCRDVRERSHVPIILVGDNSSEVDRVVGLELGADDYMAKPYSARELAARLRAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G + R F+GW +D R + P G+ L +EF Sbjct: 121 G---GDRTSGLRRHNQATFDGWMIDFARREVTEPGGQPVMLTAAEF 163 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/116 (44%), Positives = 76/116 (65%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R Sbjct: 63 VCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118 >UniRef50_C2Y7B7 Two-component response regulator n=1 Tax=Bacillus cereus AH676 RepID=C2Y7B7_BACCE Length = 224 Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 3/152 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPG 59 M +IL+V+DE L +I E EG+ AEM L++ + +L+I+D+ LPG Sbjct: 3 MYQANILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPG 62 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G + +R+Q + + FL+ + +++DKI G GADDYITKPFNP E+ R + L Sbjct: 63 QSGFDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSL 151 R M TV E++S S F +E+D +S L Sbjct: 123 RHMK-QTVPHEQKS-HSISFGRFEIDQHSAEL 152 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 10/164 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G + Sbjct: 5 IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTDV 64 Query: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L R + Sbjct: 65 CKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRNV 124 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 N+ V ++ +G D + +L+ DG L +EF Sbjct: 125 NILP------KVAHWQRDGLAADFEAYTLL-VDGVDAHLTPTEF 161 >UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=9 Tax=Proteobacteria RepID=Q2W3Z2_MAGSA Length = 278 Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 81/163 (49%), Gaps = 6/163 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I +V+DE R L+ + E GY V GA Q + +L I+D+ LP +GL Sbjct: 46 RIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDPPDLCIVDLGLPDMDGLT 105 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L REL E ++ LTGR D++LGLE+GADDYI KPF PREL R +++ R L Sbjct: 106 LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRRDQL 165 Query: 125 GTVSEE--RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSE 165 R+V F W + SL DG Q L +E Sbjct: 166 AATGAPVTTRAV----FADWVFESGDLSLTHADGRQETLTAAE 204 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 54/122 (44%), Positives = 73/122 (59%), Gaps = 1/122 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ ED+ R L I E EGY V A DG E +I E +L ++DI +PG Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + RELR + +A++ LT + E+DK++GLE+GADDYITKPF EL R +L Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 120 RT 121 R+ Sbjct: 121 RS 122 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 8/170 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I++V+DE R T+ +G+ V A G ++ +L+ +L++MD+++PG++GL Sbjct: 13 RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLT 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 LAR +R A ++ LT D+ VD++ GLE+GADDY+ KPF+ REL R R +L R + Sbjct: 73 LARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTAV 132 Query: 125 GTVSEERRSVESYKFNGWE--------LDINSRSLIGPDGEQYKLPRSEF 166 + E G + LD+ + L+ DG + L EF Sbjct: 133 PPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEF 182 >UniRef50_A1VSF0 Two component transcriptional regulator, winged helix family n=4 Tax=Betaproteobacteria RepID=A1VSF0_POLNA Length = 246 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I +++D+ + S G++ FE E+ ++L +L I+D+ LP +G+ + Sbjct: 15 IYLLDDDPDICRLVSSTLREFGFETFECHSAMELRRLLLARVPDLCIVDLGLPDADGMDV 74 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL- 124 REL+ + +M LTGR D+++GLE+GADDY+ KPF PREL R R++L R Sbjct: 75 VRELQARYACGVMVLTGRGYLSDRVMGLELGADDYVVKPFEPRELVARVRSILRRRDKAP 134 Query: 125 -GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ E RS + +F GW + L P G+++ L E R +L Sbjct: 135 GASMQPEMRS-QLAEFGGWRFRADCNLLSSPGGQEWTLSAGESRMLL 180 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 8/169 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR- 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAM 169 + SE +R V +F +D++ + L+G G++ L SEF+ + Sbjct: 126 --VHADSEPQREV--LEFGELTIDVSGHKVLVG--GKEVDLTASEFKLL 168 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 5/166 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T ILIV+D+ R+ L+ +G +V D A + + L +L+++D+ +PG +G Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-SR 120 L R+LR + + ++ LT R ++VD+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + E+R E + F + LD +R+L DG+ L SEF Sbjct: 186 RATPSAAAPEQR--EPFAFGRFVLDFQARTL-SIDGKPATLSSSEF 228 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG ++DI LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L RT+ + Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 E R+V + +R + GE +L +EF Sbjct: 131 PEGVERVRTVGPVTLD------PTRRTVTVSGEPIQLTYTEF 166 >UniRef50_Q1D8M8 DNA-binding response regulator PhoP2 n=4 Tax=Myxococcus xanthus RepID=Q1D8M8_MYXXD Length = 238 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 9/164 (5%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ILIVED+ R L+ EGY V EA + ++L E +L+I+D+ LPG++G Sbjct: 12 PAILIVEDDAHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQERAFDLLILDVMLPGEDGY 71 Query: 64 LLARELREQANVAL-MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R LR Q N ++ + LT R E D + G E+GA DY+TKP+ REL R R L+ R+ Sbjct: 72 SFCRRLRTQGNKSMVLMLTARSLEDDILRGFEVGAQDYLTKPYRLRELLARVRALVRRS- 130 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 GT E+ F+ + LD+ R + DG +L R+EF Sbjct: 131 --GTAPPEQ-----MGFSSFTLDLGRRQVSRADGSVVELTRTEF 167 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 6/168 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILI +DE + ++ E EGY V +A DG E I+ I+LV++DI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R + ++ ++FL+ + ++ DK+ GL +GADDY+TKPF P EL R L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 121 --TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 T+N V+E + ++E G +D R+ + GEQ +L EF Sbjct: 121 FLTLNQPKVAESKSALE---VGGVVIDPERRT-VDVYGEQIELTPKEF 164 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP +G+ + Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63 Query: 66 ARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +++RE + +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + RT Sbjct: 64 TKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VEDE+ + S E GY+V A DG + E D ++VI+D+ LPG +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM-NLG 125 R LR ++ ++ LT R +EVD ++GL +GADDY+TKPF+PREL R + +L R G Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 ++ + F +D+ +R + D E L R+EF Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRD-ELVPLTRTEF 226 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 83/131 (63%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE RN L+ EG++V EAT+G E ++ + + +++++D+ LP +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+ +VA++ LT R DK+ GL IGADDY+TKPF P EL R +L+ R+ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 125 GTVSEERRSVE 135 ++ + ++E Sbjct: 135 QSIRRQEAALE 145 >UniRef50_Q2W1M5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Magnetospirillum RepID=Q2W1M5_MAGSA Length = 248 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 13/168 (7%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I +VEDE R L A G+DV DG E+ + L E+ + ++I+DINLPG+ G + Sbjct: 4 IAVVEDEAPLRADLVEYLSACGHDVIGCGDGKELDRALDEHPVEIIILDINLPGEGGFSI 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 A LR ++V ++ LT R VD+++GLE+GAD Y+ KP REL + R L+R M + Sbjct: 64 AGRLRSHSDVGIIMLTARGLNVDRVVGLEVGADVYMVKPVELRELEAQVRT-LARRMRVS 122 Query: 126 ---TVSEERRSVESYKFNG---------WELDINSRSLIGPDGEQYKL 161 V E R W D + +LI PDG+ KL Sbjct: 123 QPPQVPSEIRPAADAPAPPPAAPAVPTEWIYDQLTWTLIAPDGKSVKL 170 >UniRef50_UPI00016A3BF9 Response regulator n=3 Tax=pseudomallei group RepID=UPI00016A3BF9 Length = 240 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ +TR L G+D+ + + A+ Q L +++++DINLP +G+ Sbjct: 7 RILVVEDDPITRTMLARYLGGAGFDLLTSGNVAQARQALRAASADVLLLDINLPDGDGIS 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 LARELRE + ++F+T RD ++D++LGLE DDYITKP REL R R LL R Sbjct: 67 LARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQ--- 123 Query: 125 GTVSEERRSVESY-KFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + E V++ F+ W +D+ R L G L EF Sbjct: 124 -RLYREIAPVDTVLTFDRWLIDLRRRELALSGGAVLPLTPREF 165 >UniRef50_A6TM13 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TM13_ALKMQ Length = 231 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 10/174 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPG 59 MQ IL+VED+ T+ ++ E + V A DGA +LS + DI+ +I+D+ LP Sbjct: 1 MQNKSILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPD 60 Query: 60 KNGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 NGL L + +R + ++ ++ LT D+++D ++ LE+GADDYITKPF+ REL R Sbjct: 61 CNGLELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINV 120 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L R N RS+ +G LDI +R + DG L +EF +L Sbjct: 121 CLRRAQNTIRSHNTSRSI-----SGITLDITTREVKKDDG-LISLTFAEFELLL 168 >UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7ULL1_RHOBA Length = 239 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ILI ED+ TR L+ + AEGYDV DG +++ +LV +D+ +P K+G Sbjct: 2 PRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGF 61 Query: 64 LLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR E ++F+T + +E+DK++GLE+GADDYI+KPF E+ R + +L R Sbjct: 62 DVCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRCQ 121 Query: 123 NLGTVSEERRSVESY-KFNGWELDINSRSLIGPDGE 157 + + + ++ FN +L I L GE Sbjct: 122 PAPSQTPIAKDPTTHITFNMDDLQITPSKLRATRGE 157 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G + Sbjct: 17 VLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGV 76 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT N Sbjct: 77 CQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT-NKA 135 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 S + FN +D+N R I D E+ +L EF Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQ-IYKDNERIRLTGMEF 175 >UniRef50_D1AFR9 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=D1AFR9_SEBTE Length = 221 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 93/149 (62%), Gaps = 8/149 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVEDE+ L+ E +++F+A +G+ + E + +LV++DINLP K+G Sbjct: 4 KILIVEDEVNLMEVLEDTLLEENFEIFKAYEGSAAIDMFYEVNPDLVLLDINLPKKDGWT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R +N ++ +T RD E+D++ GL IGADDYITKPF+ + LT+R + LL Sbjct: 64 ICKEIRNDSNKPIIIMTARDTELDELKGLSIGADDYITKPFSLKILTLRIKKLLK----- 118 Query: 125 GTVSEERRSVESYKFN--GWELDINSRSL 151 +E+ E+ +FN +EL I+S+++ Sbjct: 119 -IENEDYYLYETLRFNFGTYELIIDSQNI 146 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR- 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPR 163 G + E + ES G LD GP+G PR Sbjct: 123 ---GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPR 161 >UniRef50_B0K8A6 Response regulator receiver modulated diguanylate cyclase n=12 Tax=Clostridia RepID=B0K8A6_THEP3 Length = 318 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 3/119 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILIV+D +TR LK I E GY V EA DG E QI ++VI+DI +PG NG Sbjct: 13 NILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNGFD 72 Query: 65 LARELR-EQANVAL--MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 L R LR E+ N+ L + LT +DN +KI GLE+GADDY+ KPFN +EL + NL R Sbjct: 73 LLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNLFQR 131 >UniRef50_Q5HR28 Response regulator saeR n=60 Tax=Staphylococcus RepID=SAER_STAEQ Length = 229 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 6/148 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+DE + ++ FE EGY V T G E ++LS DI+++I+DI +P +G Sbjct: 3 HLLIVDDEKDIVDICQTYFEYEGYQVTTTTCGKEALKLLSS-DIDIMILDIMMPEVSGYD 61 Query: 65 LARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++++ Q ++ ++LT + E D I L +GADDYI KPF+PREL +R NLL+R Sbjct: 62 IVKKMKDMQLDIPFIYLTAKTQEHDTIYALTLGADDYIKKPFSPRELVLRTNNLLARM-- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSL 151 + S +E +F+G L S++L Sbjct: 120 --SKSNHSNKIEQLEFDGLVLKNLSKTL 145 >UniRef50_A7HP70 Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP70_PARL1 Length = 257 Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R +++ A G + EA D A ++ S +LVI+D+ L NG + Sbjct: 21 LLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMFSGGKFDLVILDLLLGADNGFDV 80 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RE+R+ + + +TG+ DK++GLE+GADDY+ KP N REL R R LL RT N G Sbjct: 81 LREIRQTHSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRRTANSG 140 Query: 126 TVSEERRSVESYKFN----GWELDINSRSLIGPDGEQYKLPRSE 165 S R + + + W+ D + R L PDG L +E Sbjct: 141 G-SGARTNAGAADSDEAAAQWKFDPHRRRLCAPDGALVPLTTAE 183 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 3/123 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG +G+ L Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 66 ARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 AR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + +L RT Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 123 NLG 125 ++G Sbjct: 126 SMG 128 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/166 (34%), Positives = 99/166 (59%), Gaps = 4/166 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ + L + EG++V G A ++L + + V++DI +PG +GL Sbjct: 8 ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMSGLD 67 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN- 123 + R +R + V ++ LTGR +++D+I+GLE+GADDY+ KP NPREL+ R + ++ RT N Sbjct: 68 VLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTENS 127 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 LG + + V + +G ELD +R+ + + L +EF A+ Sbjct: 128 LGNGAAGKTIVHAL-LHGIELDTGTRTAV-VNNTTLPLTSAEFNAL 171 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 73/115 (63%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ + Sbjct: 58 VLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIEV 117 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 118 FRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172 >UniRef50_A1VI78 Two component transcriptional regulator, winged helix family n=54 Tax=Bacteria RepID=A1VI78_POLNA Length = 282 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 11/130 (8%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINL---VIMDIN 56 + P IL+VEDE +TL+ + +G+ V+ +T G Q L E+ L VI+DI Sbjct: 30 LNKPRILVVEDESGIADTLQYVLSTDGFAPVWCSTAG----QALREFSAGLPALVILDIG 85 Query: 57 LPGKNGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIR 113 LP NG L + L+ A V ++FLT R +E+D+++GLE+GADDYI KPF+PREL R Sbjct: 86 LPDLNGFELFKRLQALPGGAQVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVAR 145 Query: 114 ARNLLSRTMN 123 R +L R++ Sbjct: 146 VRGILRRSVR 155 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 11/128 (8%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY----------DINLVIMD 54 +IL++EDE + R T+ + EGY A+DG E ++ Y ++ L+I+D Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 INLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIR 113 + LPG NGL L R +R Q V ++ ++ + +E+D+++GLEIGADDY+ KPF RE+ R Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 114 ARNLLSRT 121 R LL RT Sbjct: 143 CRALLRRT 150 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGL 63 IL+VED++ + Y+V G A + ILS +LVI+D+NLPGK+G Sbjct: 31 RILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRP-DLVILDVNLPGKDGF 89 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R+ R+ + ++ +T RD D++LGLEIGADDY+ KP PR L R + L R Sbjct: 90 EICRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRAP- 148 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 V+E E Y F + +D RS++ PDG L +EF Sbjct: 149 -ARVAEGAPQPERYTFGKFSIDRTDRSVVLPDGSTPDLTSAEF 190 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 1/119 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKN 61 P IL+V+D+ + L +G+DV GAEM L+ + ++L+++DI LPG++ Sbjct: 14 APRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGED 73 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 74 GLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRR 132 >UniRef50_D0RRP4 Protein PetR n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRP4_9RICK Length = 226 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 75/123 (60%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HILI++DE R LK E+E + V A D + + + +L+I+DI +PG++ Sbjct: 4 EKKHILIIDDEEGIREPLKEYLESENFFVSTAKDAEDAKNKIQLLEFDLLIVDIMMPGQS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L +E+R+ + ++FLT +I GLE GADDY+ KPF P+EL +R +N+L R Sbjct: 64 GLELTKEIRKDKDTPIIFLTAMGESASRIHGLETGADDYVPKPFEPKELVLRIKNILKRV 123 Query: 122 MNL 124 +L Sbjct: 124 KSL 126 >UniRef50_C5SHJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHJ8_9CAUL Length = 213 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Query: 23 FEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTG 82 E GY V A D + QIL+E +++++++D+ LPG+ GL + R L + ++ ++ Sbjct: 5 LEDNGYSVIRAPDAQALDQILAEQNVDVIVLDLGLPGEGGLSVCRRLDARLRPGILVVSA 64 Query: 83 RDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGW 142 E D+I+GLE+GADDY+ KPF+PREL R + ++ R L S + Y+F G+ Sbjct: 65 AGEETDRIIGLELGADDYLPKPFSPRELLARIKAMIRRHSALRQGSSRDDGI--YRFAGF 122 Query: 143 ELDINSRSLIGPDG 156 + R L+ P G Sbjct: 123 TYEAGKRRLLSPSG 136 >UniRef50_D1BZA1 Two component transcriptional regulator, winged helix family n=2 Tax=Micrococcineae RepID=D1BZA1_XYLCX Length = 231 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 73/119 (61%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P L+V+DE ++ + +G++ A D ++L D++L ++D+ LPG +G Sbjct: 4 APRALVVDDEPQMLAIVEFALQTQGFECVTAPDAERAWRVLLTQDVDLAVLDVMLPGASG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L R +R + +V ++ LT R D+I GLE GADDY+ KPF+PRE+ +RA+ L+ RT Sbjct: 64 IELCRRIRSRLDVPVLLLTARGETEDRIAGLEAGADDYVPKPFSPREVALRAQALVRRT 122 >UniRef50_C0Z4B7 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z4B7_BREBN Length = 233 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 2/123 (1%) Query: 1 MQTPHIL-IVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLP 58 M TP+++ +V+DE + L+S + G V + G ++ +L E +L I+DI +P Sbjct: 1 MNTPYLVYLVDDETNLLDLLQSYLQNAGLQVKAFSSGKDVLPLLDEETQPHLWILDIMMP 60 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 +G L R +RE++NV ++F++ RD +VDKI+GLE+G+DDY+ KPF PREL IRA+ LL Sbjct: 61 DIDGYELLRLIREKSNVPIIFISARDQDVDKIIGLELGSDDYLAKPFLPRELVIRAKKLL 120 Query: 119 SRT 121 RT Sbjct: 121 QRT 123 >UniRef50_D0XTW3 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW3_9CAUL Length = 242 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 1/163 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+++ ++ R + + Y+V A+ G +M +IL+ ++ V++DI LPG+ G Sbjct: 4 RILLLDADVEARAQMCDLLSRHEYEVVTASSGQQMDRILTTTAVDAVVLDIMLPGEGGFS 63 Query: 65 LARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR Q + ++ ++ E D ++GLEIGADDY+ KP+ REL R R +L R Sbjct: 64 VCNRLRSQNHSPGVIVVSAMAEESDVVVGLEIGADDYVAKPYRSRELLARIRAVLRRRQA 123 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + Y+F+GW L++ +R L P +L EF Sbjct: 124 AMRPNPDEDRANVYRFDGWRLNVVTRQLFDPYSRAVELSSGEF 166 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 5/153 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE + +K + E EGY ++ +A E ++ ++L+++D+ + G Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G +RE ++ + FLT R ++ DK+ G +GADDYITKPFNP EL R R L Sbjct: 61 MSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLI 152 RT S+E S ++Y ++ + + LI Sbjct: 121 RTYQ----SKETSSNQTYTYDYFTFSPQNAELI 149 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +E+ + LD R L+ GE+ ++ EF+ + Sbjct: 121 WKQMKSHAEQT------AISALVLDKEKR-LVYSFGEEVEVTSKEFQVL 162 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 97/164 (59%), Gaps = 4/164 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NGL Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 65 LARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-TM 122 + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R M Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 L E S ++ +F+ +E + R+L D ++ L EF Sbjct: 124 ELSEKVNE-VSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEF 165 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G + Sbjct: 3 VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWGV 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R L Sbjct: 63 CKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---LQ 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSL 151 S K LD NSRSL Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSL 145 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 1/166 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+ +DE R L GY+V EA + M + ++ ++V++DIN+PG + Sbjct: 6 EAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL R LR + + ++ L+ VD+I+GLE+GADDY+ KP + REL R + L R Sbjct: 66 GLTALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125 Query: 122 MNLGTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G S +R R + F LD++ L G GE+ + EF Sbjct: 126 GFAGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEF 171 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 5/161 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +DE + L E EGY +A +G EM I+++ ++LV++D+ +P +G+ Sbjct: 8 ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR + ++ +T + +E D++ GL GADDYI KPF+P+EL R + R N G Sbjct: 68 LRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR--NYG 125 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 +E S E ++ ++++NSR + DGE L R EF Sbjct: 126 YNDDE--SKEELQYKSIKVNLNSRKVF-IDGEAVSLTRKEF 163 >UniRef50_C8SKC4 Two component transcriptional regulator, winged helix family n=2 Tax=Mesorhizobium RepID=C8SKC4_9RHIZ Length = 257 Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I+IVEDE R + +A GYDV A A ++ +L I+DI +PG++GL Sbjct: 20 RIVIVEDEPDLREAVAEYLDAAGYDVATAETAAAARILIETQPFHLAILDIAMPGEDGLS 79 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + + +++ T +D+I+GLE+GADDYI KP+ RE+ R R++L R Sbjct: 80 LGRWLRSRMPIGIIYATAAGTALDRIVGLELGADDYIVKPYELREVLARVRSVLRRVPQP 139 Query: 125 GTV--SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + + R S F ++ D++ R + G +G + +SEF Sbjct: 140 SELLDRKARTDRRSVAFGPFQADLDGRLVTGANGAVIDMAKSEF 183 >UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8V6_9DELT Length = 289 Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 6/125 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----SEYDINLVIMDIN 56 + P +L+V+D+ R + E EGY V +A +GAE +L S D +L+++D++ Sbjct: 32 RQPRLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVS 91 Query: 57 LPGKNGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +P +G L R LR A+ ++FL+ R +E+D+ILGLE+G DDY+TKPF+ REL R + Sbjct: 92 MPEIDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVK 151 Query: 116 NLLSR 120 LL R Sbjct: 152 VLLRR 156 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 73/116 (62%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRA 122 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG +G Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 65 LARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL RT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 11/168 (6%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + I VED+ R + EGYD D E L I+L+I+DI LPGK+ Sbjct: 14 KCTMICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKS 73 Query: 62 GLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL + +E+R + N+ +M LT + E DKI+GL+ GADDY+ KPF+ EL R R LL Sbjct: 74 GLEILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALL 133 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 R+ ++S+ + + + ELD + R+ + DGE +L EF Sbjct: 134 RRS----SLSKTKSKI---IYKNIELDYDKRT-VSVDGENVELTYKEF 173 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+VEDE L + G+ G + + + +L+++DI LPGKNGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R + V + +T E+D++LGLE+GADDYI KPF+PRE+ R + L R + Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G V E R+ G+++D ++ I ++ L +E+R + Sbjct: 127 G-VPEPTRT-------GFQID-EAQQRISFKNQRLDLTPTEYRLL 162 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 94/162 (58%), Gaps = 7/162 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILI+EDE + +K+ E EGY V+ +G + ++ + I+LVI+D+ LP +G Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + LR+ ++V + LT + DKI GL IGAD+Y+TKP +PRELT R L R Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR---- 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 V ++ +V S+ N +D++ R L+ GE+ L +EF Sbjct: 119 --VGCKKENVISFNDNKLIIDVDKR-LVKLSGEEINLTPNEF 157 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 96/164 (58%), Gaps = 11/164 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD---INLVIMDINLPGKNG 62 +LIVEDE + L + EG++ TDG L+E+D ++V++D+ LPG +G Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGP---AALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 G + S + +D+ R ++ +G+ LP EF Sbjct: 119 --GGDDDSEMSDGVLESGPVRMDVE-RHVVSVNGDTITLPLKEF 159 >UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=Beggiatoa sp. PS RepID=A7BPZ9_9GAMM Length = 163 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 75/121 (61%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HILIVEDE+ L+ E Y V G ++ + + L+++DI LP Sbjct: 1 MKNQHILIVEDEIKIAQLLRDYLEKSDYTVSCLEQGDKVVPYVKQTIPTLILLDIMLPEM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + RE+R ++V ++ +T + E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 61 DGIAVCREIRTFSSVPIIMITAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 120 Query: 121 T 121 T Sbjct: 121 T 121 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 18/180 (10%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VEDE +TLK E ++V A +G +I E++ +LV++DI LP Sbjct: 1 MLKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + + +++ + + LT RD+ +DKILG+EIGADDYITKPF RE+T R N + R Sbjct: 61 SGFELCKIMSQKSYIVM--LTARDDVIDKILGMEIGADDYITKPFEIREVTARI-NAIFR 117 Query: 121 TMNLGTVSEERRSVESY--------------KFNGWELDINSRSLIGPDGEQYKLPRSEF 166 ++ + E ++ S K + + ++ ++R++I DG++ L R EF Sbjct: 118 RVSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVI-KDGKEIMLKRKEF 176 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 1/122 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TM 122 TM Sbjct: 191 TM 192 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L E I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDE-TIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+ +D R L+ + EGY+V EA DG E+ Q+ I+L+++DI +P Sbjct: 1 MQT-RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +LRE +NV ++FLT + + DK LG GADDY+ KPF+ ELT R + LL R Sbjct: 59 NGYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 47/120 (39%), Positives = 72/120 (60%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+D R + + EG++V EA +GA+ ++ + D +L+I+DI +PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R++RE +N ++FL+ R E DK LG G DDY+ KPF+ EL R++ L+ R Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 >UniRef50_Q1VFU1 Two-component response regulator CreB n=6 Tax=Vibrio RepID=Q1VFU1_VIBAL Length = 236 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 69/114 (60%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + P +LI+EDE L + E +GY E L L+++D+ LP N Sbjct: 3 EQPTVLIIEDESAIAENLIHVLEMDGYHAEWFATAGEGLAFLQHNSAALLVLDVGLPDGN 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 G L + +RE +++ ++FLT R +E+D+++GLEIGADDY+TKPF+PRE+ R + Sbjct: 63 GFELCKTIREFSDIPIIFLTARSDEIDRVVGLEIGADDYVTKPFSPREMLARIK 116 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 3/119 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG +G+ L Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 66 ARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 AR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + +L RT Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRT 124 >UniRef50_C8R030 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R030_9DELT Length = 240 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + T HIL+++D+ ++ EGY V A++ AE Q L + +LVI+D+NLP Sbjct: 5 IDTHHILVIDDDPSLLYLCATVLLKEGYQVDYASNQAEAMQALEQNKYDLVILDLNLPDG 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + + L++Q+ + + +T R +++LG E GA DY+ KPF P ELT R R +L R Sbjct: 65 DGLEIGQRLQQQS-IPFLVMTIRSQPAERLLGFESGAADYLIKPFLPHELTHRVRRVLPR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R S W D+ + L+ DG KL EF+ + Sbjct: 124 LEE----PSRFREYTSVPLGRWHFDLKRQVLVAEDGRVTKLTGGEFKLL 168 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 9/147 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAE-MHQILSEYDINLVIMDINLPGKNGLL 64 ILI+EDE+ R LK E EGY V A DG E + ++++E +LV++D+ +P +G Sbjct: 4 ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKP-DLVLLDVMMPKLDGFA 62 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ELR AN V ++ LT + D++ GL+ GADDY+ KPF+ EL R R +L R Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH-- 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRS 150 E+R+V + +F E+D+ ++ Sbjct: 121 ----QREKRAVATLRFGEVEIDMVKQT 143 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/129 (41%), Positives = 77/129 (59%), Gaps = 10/129 (7%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEY--------DINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG ++ S+ + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMN 123 R LL R+ N Sbjct: 145 RALLRRSQN 153 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P ILIV+DE ++ E EG+ ++ A + + + +L I+D+ LP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G L +++R Q+N+ ++FL+ + EVDK+LGL IG DDYITKPF+P+E+ R + L Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDI 146 R + E +V ++ N E ++ Sbjct: 121 RVSMMEAPVAETTTVGPFQMNEDETEV 147 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 7/139 (5%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P+ILIV+D+ R + E EG+ +EA DG + Q ++E +++VI+DI +P +G Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR--- 120 + ELR+ ++ ++ LT + K+ G +G DDY+ KPF+P EL +R + LL R Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 121 ----TMNLGTVSEERRSVE 135 ++ +GTV R++ E Sbjct: 152 TVSQSIQVGTVLLNRKTFE 170 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 7/161 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---N 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 T EE + + LD +SR + G KL SEF Sbjct: 124 TPQEESKRITE---GPIILDEDSRE-VSVGGNSLKLTPSEF 160 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 1/155 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T ILIVED+L +++ EGY V ++G + E+ LVI+DI LP K Sbjct: 1 MKT-KILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPALVILDIMLPQK 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + RE+R Q N ++ T R E+D+I+GLEIGADDY+ KP PR L + + L R Sbjct: 60 DGLSVCREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPD 155 +++E ++ E F ++ RS+ D Sbjct: 120 DRLAESIAENQQVSEYISFGQLAINTQKRSVTLAD 154 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 2/137 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ + Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTI 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R G Sbjct: 63 CRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATG 122 Query: 126 --TVSEERRSVESYKFN 140 + E+ E + N Sbjct: 123 KAVIDEDMIETECFTIN 139 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 98/166 (59%), Gaps = 1/166 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + L Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S + ++ +F ++ + ++ G++ KL E+ +L Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFL-GKELKLTPIEYEILL 167 >UniRef50_Q2W1S0 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W1S0_MAGSA Length = 168 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 78/136 (57%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+V+D+ R+ L I A+GY V G EM L+ +LV++D+ +PG+ Sbjct: 1 MTPAHILVVDDDATVRSILSGILTAQGYRVTPCGGGEEMWAALAAGPADLVLLDVEMPGE 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + LRE+ + ++ LTG K+ GLEIGAD++++KP + REL R ++LL R Sbjct: 61 DGYTLVQRLRERFALGIILLTGHTALEHKLHGLEIGADEFLSKPCDRRELLARIKSLLRR 120 Query: 121 TMNLGTVSEERRSVES 136 ++ + +R Sbjct: 121 VPSVPVRTPPKRPTSC 136 >UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY83_EIKCO Length = 226 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 8/166 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHILI+EDE ++ + A + Q+L+ +L+++D+ LP +G Sbjct: 3 PHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGF 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L + LR Q ++ LT +D E D+ILGLE+GADDYI KPF+PREL R + +L RT Sbjct: 63 ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRT-- 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R + ++ W D+ + I G + L + E+R + Sbjct: 121 -----QTRPAAKTESVPVWHDDVPA-CCIRHQGRELPLTQGEYRLL 160 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDV---FEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ EAEG+ V + + S ++LV++D+ +PG + Sbjct: 3 RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR A+ ++ +T R EVDK++GL +GADDY+TKPF+PRE+T R +++L R Sbjct: 63 GLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRRR 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + GT ++ R +F+ +D R I DG +L EF Sbjct: 123 RD-GTTGDDPR----LRFDELTVDPIGRE-ITVDGAPVRLTALEF 161 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ DG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R + Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + +E+ +D+ R ++ +GE LP EF Sbjct: 124 DAGADDGVLEAGPVR---MDVE-RHVVSVNGEPITLPLKEF 160 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 73/117 (62%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG GL Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRA 126 >UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria RepID=B4RCQ3_PHEZH Length = 251 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 74/118 (62%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P +L+V+D+ R L E A DG ++E +LVI+DIN+P +GL Sbjct: 21 PQVLVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDINMPRLDGL 80 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R LR Q ++ ++FL+ RD+E+D++LG+E+G DDY+ KPF+PRE+T R + +L R Sbjct: 81 EVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRV 138 >UniRef50_Q2W923 Response regulator n=2 Tax=Magnetospirillum RepID=Q2W923_MAGSA Length = 279 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 2/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +++VED+ ++ G +V A GAEM +L ++ +L+++D+NLPG++G Sbjct: 42 KVMVVEDDPDLCGSICRYLSLVGMNVQRAGSGAEMDALLPDFSPDLLVLDVNLPGEDGFS 101 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +A LR + V ++ LT R D++LGL GAD Y+ KP REL +L R Sbjct: 102 IAARLRSASKVGIIMLTARGQLDDRVLGLTAGADAYLVKPVQFRELEAVIHSLTRRLSE- 160 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +EE+R W D S SLI P+G + L +E+R + Sbjct: 161 -PPAEEKRETREDGNQTWGFDAASWSLITPNGHRVPLTNAEYRVL 204 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 74/116 (63%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++DE R L+S + EG++VFEA +G E + + +L+++DI +P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 R ++A ++ LT + + DKI+GLE+GADDYITKPFN RE+ R R +L R+ Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRS 120 >UniRef50_D2ERE1 DNA-binding response regulator n=1 Tax=Streptococcus sp. M143 RepID=D2ERE1_9STRE Length = 227 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 2/153 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL++EDE + R+ + + E GY V + TD + Q + +YD +L+I+D+NLPG+ G Sbjct: 3 HILVIEDEALIRDEIVILLEKAGYQVDKLTDFKDTSQQVLQYDTDLIILDLNLPGETGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + L+ + +V ++ LT R+ D+I L++GAD+Y+TKPF R N+L R Sbjct: 63 ICKNLKSKRSVPILVLTSREQLKDEIHALKLGADEYLTKPFKKERFLARIENILKRYEGR 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGE 157 + E+ + N + L IN S++ P + Sbjct: 123 QNLLEKDNFL--LDRNTYTLYINGHSILLPQNQ 153 >UniRef50_UPI000196B4E5 hypothetical protein CATMIT_00997 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B4E5 Length = 236 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 99/165 (60%), Gaps = 14/165 (8%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE++ R+ +K F A Y+V EA DG + +++ DI++V++DI +PG +G Sbjct: 20 LLVVEDEVLIRDIIKEYFAARDYEVIEAVDGYDALNKVNQ-DIDMVLLDIMMPGMDGYET 78 Query: 66 ARELREQANVALMFLTGRDNEVDKIL-GLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +++RE+ ++ ++F++ +E D +L G +GADDYITKPF P L + + +L+R+ Sbjct: 79 CKKIREKYDMPIIFISAL-SETDNMLDGYHVGADDYITKPFKPSVLYAKCQAILNRSKK- 136 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T E++ + W LD S+ L+ DGE LP E+ M Sbjct: 137 -TKKEDKEII-------W-LD-ASKHLMYVDGEPVALPNKEYLLM 171 >UniRef50_P31079 Protein petR n=50 Tax=Alphaproteobacteria RepID=PETR_RHOCA Length = 237 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 78/137 (56%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+LIV+D+ R L+ G+ V D A ++LS + NL+++D+ +PG++GL Sbjct: 7 PHLLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLLSGLEFNLIVLDVMMPGEDGL 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R+LR + ++ LT R ++I GLE GADDY+ KPF P+EL +R +L R Sbjct: 67 SLTRDLRTKMATPILLLTARGETRERIEGLEAGADDYLPKPFEPKELLLRINAILRRVPE 126 Query: 124 LGTVSEERRSVESYKFN 140 T + S+ +++ Sbjct: 127 AVTAGPKYLSLGPLRYD 143 >UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7R2_9BURK Length = 239 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 4/163 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMH-QILSEYDINLVIMDINLPGKNGL 63 ILIVED+ L + +GY V + D E +L+ D++LV++D+ LPGK+GL Sbjct: 5 SILIVEDDADISVPLAAFLSGKGY-VTQVADSVEAADALLATNDVDLVLLDVMLPGKDGL 63 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM- 122 L R L + ++ LT D+ DK++GLE+GADDY+ KPF+PREL R R +L R + Sbjct: 64 DLCRRLHAKGGPRIIMLTALDDPTDKVVGLELGADDYVPKPFDPRELLARIRAVLRRPVA 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSE 165 + G V++ + +F+G+ R + P G + L +E Sbjct: 124 SEGEVAKPVTEL-VLQFSGFTFYPYRRFVRSPAGLRVPLTGAE 165 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 74/119 (62%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +D+ R L+ E+EGY V EA DGAE + I+LV++DI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R +RE + + ++ ++ + + DKI+GL++GADDY+TKPFNP E R R+ L R + Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 92/162 (56%), Gaps = 7/162 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRR---- 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + R E K+ +++ +R ++ +GE +L E+ Sbjct: 119 --YRKGRGEEEILKYGKVAVNLKTREVLK-NGEPVELTSKEY 157 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 5/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 4 KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L R Sbjct: 64 VLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGRR 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E+D N+ + + DGE L +EF+ + Sbjct: 124 EGGR----RDGVLRLGPLEMDTNAYT-VTRDGEPLDLTPTEFKIL 163 >UniRef50_C9XMG9 Two-component system response regulator n=9 Tax=Clostridium RepID=C9XMG9_CLODC Length = 234 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 74/115 (64%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I I +DE RN +K+ + EG+DV + G E+ + + + +LVI+DI +PG +G + Sbjct: 5 IYIADDEDNIRNLVKTFLKNEGHDVMDFKTGDELLEQFNIKECDLVILDIMMPGSSGFEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +LRE++ V ++ LT RD ++D I G+ +G+DDY TKPF+P L +R +++ R Sbjct: 65 CTKLREKSTVPIIMLTARDTDIDYITGITLGSDDYFTKPFSPMSLVMRVKSIFRR 119 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+ +DE R+ L+ E GY+V EA DG + +L +++ ++DI +P +G + Sbjct: 5 ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + LRE ++V ++ ++ + + +KILGL +GADDY+ KPFNP E R + R + Sbjct: 65 LKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGMA 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ +R + + ELD + +L +GE +L E+R M Sbjct: 125 A-AQPKRPAKVLRCRNLELDQEACALTC-NGEPVELTSVEYRIM 166 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 73/119 (61%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP ILIVEDE L A Y + G ++ + + +L+++D+ LPG +G Sbjct: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L L RE+R +++ ++ +T + E+D++LGLEIGADDYI KP++PRE+ R + +L R Sbjct: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP +G + Sbjct: 8 VLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEEI 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT N G Sbjct: 68 CKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNEG 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAM 169 + NG +L ++ R + E +L +EF+ + Sbjct: 128 L------KAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLL 166 >UniRef50_B0P738 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P738_9FIRM Length = 224 Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAE-MHQILSEYDINLVIMDINLPGKNGL 63 IL+ EDE R + S EG+ V EA DG + + + D+ LV++D+ +P K+G Sbjct: 4 KILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDGY 63 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 RE+R ++NV ++ LT RD+E D++ G GAD+YI KPF+P L R +NLL RT Sbjct: 64 DACREIRGKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRT 121 >UniRef50_Q2P1E0 VirG-like two component response regulator n=13 Tax=Proteobacteria RepID=Q2P1E0_XANOM Length = 259 Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 94/162 (58%), Gaps = 1/162 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ + + + G + F AT+ +E+ + L + +++++D+ L ++GL L Sbjct: 25 VLVVDDDQAMAHVVMGHIRSHGMEAFVATNSSELAEALRRREPDILLLDLMLKHEDGLDL 84 Query: 66 ARELREQANVALMFLTG-RDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LR+++++ ++ ++G R +E+D+++GLE+GADDY+ KPF ELT R R +L R + Sbjct: 85 LRALRKESDIPVIIMSGHRRDEIDRVVGLELGADDYLPKPFGLHELTARIRAVLRRHITS 144 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + +F+ WE D+ +R++ L + E+ Sbjct: 145 KMAAARGAGEGRVRFDAWEFDLQARTVGRTGAPAIALTKGEY 186 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 87/146 (59%), Gaps = 6/146 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE + +K FE +GY V A++G E + + DI+++++DI +P +G + Sbjct: 5 ILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIE-YCDKDIDIILLDIMMPNIDGFQV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ + ++FL+ R +E+DKI GL +G DDYI KPF+ +EL R + L R + Sbjct: 64 CQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRIP 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSL 151 + + S F LDINSR + Sbjct: 124 LNNRSKIS-----FGKLTLDINSRKV 144 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 15/168 (8%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIK------ 116 Query: 122 MNLGTVSEERRSVESYKFN-GW-ELDINSRS-LIGPDGEQYKLPRSEF 166 + EERR+ + W +L+I S ++ GEQ L EF Sbjct: 117 ---ARLREERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEF 161 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 69/110 (62%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIVED+ ++ EA G+D DG E+ +L + +L+++D+ LPGK+G Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 + RE+REQ ++ ++ +T R VDKI GL +GADDYI KPF+P EL R Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARV 115 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G L Sbjct: 14 ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGYEL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R M++ Sbjct: 74 LKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR-MDVF 132 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E+++ E + LD+ S L +G+Q ++ EF+ + Sbjct: 133 S-KGEKQNHEIIQIGDVMLDLVSCKLY-KNGQQKEVTSYEFKIL 174 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 4/129 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR- 120 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 121 ---TMNLGT 126 T NLG Sbjct: 124 DKITTNLGV 132 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P +L+VED+ T+ E +G V A+ + +++D+ LP NG Sbjct: 9 APRVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNG 68 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L RELR+ A V L+ L+ R E+D++LGLE+GADDY+TKPF+PREL R R LL R Sbjct: 69 LDWCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRV 128 Query: 122 MNL 124 L Sbjct: 129 QRL 131 >UniRef50_B8IIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIA6_METNO Length = 238 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I++VEDE R ++ G+ V A DG E+ + + + ++VI+DI LP +NGL L Sbjct: 5 IIVVEDEADLRQAVEEYLTEAGFRVIGAADGRELRAAVDQAEPDVVILDIALPAENGLSL 64 Query: 66 ARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR---- 120 AR LR + + A L+F T N +I GLE+GADDY+ KP++ REL R R++L R Sbjct: 65 ARWLRSRGSKAGLIFATAAQNATHRIAGLELGADDYVVKPYDLRELLGRVRSVLRRVIRS 124 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKL 161 T+ R+V F LD++ R+L G L Sbjct: 125 TVASPAAPAPARTVAVGLFT---LDLDRRTLFDTSGTPVPL 162 >UniRef50_A9B2W4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B2W4_HERA2 Length = 227 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 69/116 (59%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R + GY V +A DG + + LVI+D+N+PG +G + Sbjct: 3 ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFEV 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 R +R Q+ V +M LT R++E D I GL+ GADDY+ KPF+PR LT R R LL R Sbjct: 63 CRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRV 118 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/170 (35%), Positives = 89/170 (52%), Gaps = 12/170 (7%) Query: 1 MQTPH---ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL 57 + PH +L+VEDE + ++ +G+ V DG + ++DI L Sbjct: 3 VDAPHRGLVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIAL 62 Query: 58 PGKNGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 PG G + R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R Sbjct: 63 PGLPGTEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRA 122 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 +L R G R V G LD + R++ G+ +L +EF Sbjct: 123 VLRRVA--GPPPGRPRIV-----GGVTLDPDRRTVTA-AGDPVQLTSTEF 164 >UniRef50_B5ZPT0 Two component transcriptional regulator, winged helix family n=8 Tax=Rhizobium RepID=B5ZPT0_RHILW Length = 246 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 3/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + + EAEG+ A E IL+ ++LV++D NLP + Sbjct: 4 QKVRILIVEDDPDMAELISDLVEAEGWIPTCAGSAEEATDILAREQMHLVLVDHNLPRTS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G A++LR + N+ ++ +T + D++LGLE ADDY+ KPF P ELT R + +L RT Sbjct: 64 GRAFAQKLRSEINIGIVMVTAAGSAADRVLGLETAADDYVVKPFEPIELTARIKAVLRRT 123 Query: 122 M-NLGTVSEERRSVE--SYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + +L E R E S W +D+ R + L +EF Sbjct: 124 VPSLKQEKESEREHERPSLLLGDWAIDLMGRQAVCLADRSKTLTTAEF 171 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P +LIV+D+ L+ +G+ V EA +GA+ +L + D+ ++D LPG G Sbjct: 15 VPTVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLPQADV--AVLDWMLPGMTG 72 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 L LAR V L+ LT RD E DK+LGLE GADDY+TKPF+PRE+ R + LL R Sbjct: 73 LELARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRR 131 >UniRef50_Q0KAU9 Response regulator, OmpR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0KAU9_RALEH Length = 204 Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 2/108 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R + + G V A DG +M IL ++L+++D+ +PG +GL+ Sbjct: 7 HILVVDDDREIRELVSTYLAKNGLRVTVAQDGRQMCAILEANAVDLIVLDVMMPGDDGLM 66 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110 L RELR + ++ LT R +E D+ILGLE+GADDY+ KPF REL Sbjct: 67 LCRELRAGKHKTTPVLMLTARSDETDRILGLEMGADDYLPKPFAAREL 114 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 13/139 (9%) Query: 1 MQTPHILIVED-----ELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 M IL+V+D ELV+ N + EGYDV +A D E +++ +++ I+DI Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAR-----EGYDVLKAYDAEEALKVVGNESVDMFIVDI 79 Query: 56 NLPGKNGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTI 112 LPG +G L R+LR + N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ Sbjct: 80 MLPGMDGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIA 139 Query: 113 RARNLLSRTMNLGTVSEER 131 R + + R EER Sbjct: 140 RIKAVFRRIQLSAQEREER 158 >UniRef50_B8FS97 Two component transcriptional regulator, winged helix family n=6 Tax=Firmicutes RepID=B8FS97_DESHD Length = 239 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +L+V+DE R L I EG+ V A + ++ +VI+D++LP +G Sbjct: 8 KLLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSLPDGDGF 67 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L E R + V ++FL+ RD + +++LGL +GADDYITKPF PREL +R + +L+RT Sbjct: 68 SLMSEFRSISAVPVLFLSARDEDENRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTYF 127 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGE 157 T+ + ++ + ++ +D+NS + P G+ Sbjct: 128 PPTLRQSKKPL--FRLGEAVVDLNSALVTRPQGQ 159 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/116 (42%), Positives = 78/116 (67%), Gaps = 1/116 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-SEYDINLVIMDINLPGKNGLL 64 IL+V+D+ + ++ +EGY+V +A D IL SE DI+L I+DI +PG +GL Sbjct: 27 ILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGLS 86 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + +++RE +++ ++ L+ + ++DKI+GL GADDY+TKPFNP ELT R + L R Sbjct: 87 MVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRR 142 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 1/122 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE +K + EG+ +V A+ E I+ + ++L+++D+ +PG Sbjct: 1 MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + G ++ E+R N + FLT + +++DK+ G GADDYITKPFNP EL R + L Sbjct: 61 QTGFDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 120 RT 121 RT Sbjct: 121 RT 122 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/119 (36%), Positives = 74/119 (62%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HI +VED+ +N + + + EGY + + ++ ++ I+DI LPG +G Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +++R +++V ++ ++ +D E+DKILGLE+G DDY+TKPF+PREL R + L R+ Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRS 120 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 8/160 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE RN ++ +GY++ EA +G E + + + L+I+D+ +P +G + Sbjct: 5 ILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWEV 64 Query: 66 ARELREQANVAL--MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 E+R++ N+AL + LT R DK+ GL+IGADDY+TKPF P EL R LL R Sbjct: 65 CEEIRKE-NLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR--- 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPR 163 V + + F+ ++D++ + D + P+ Sbjct: 121 --AVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPK 158 >UniRef50_C8QI30 Two component transcriptional regulator, winged helix family n=1 Tax=Pantoea sp. At-9b RepID=C8QI30_9ENTR Length = 248 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 6/166 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPGKNG 62 P IL+V+D+ L + + VF G + +L ++ +I+LV++D+ LP NG Sbjct: 3 PAILVVDDDRAVCELLHDVLSEHVFTVFSCHQGKDALTLLDKHPEISLVMLDMMLPDTNG 62 Query: 63 LLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 LL+ +++ R++ + ++ LTG +E D ++GLE+GADDYI KPFNPR + RAR L R Sbjct: 63 LLVLQQMQRQRPELLVIMLTGMGSEADMVVGLEMGADDYIAKPFNPRVVVARARAALRRC 122 Query: 122 MNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 L VS + E ++FNGW LD L P E L + E+ Sbjct: 123 GRLAQPVSLQD---EGWQFNGWRLDETRCQLFNPQRETVMLTQGEY 165 >UniRef50_B7JF46 DNA-binding response regulator n=87 Tax=Bacteria RepID=B7JF46_BACC0 Length = 225 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 8/148 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HIL+ +D+ R L + EG+ VFEA DG ++L + +I+L I+DI +P Sbjct: 1 MKMIHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L E+R+ ++ ++ LT +D VDK G G DDYI KPF P E+ R + LL R Sbjct: 61 DGYTLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRR 120 Query: 121 -------TMNLGTVSEERRSVESYKFNG 141 + L + +R+ VE K NG Sbjct: 121 YQMLSADIITLHGTTIDRKGVEV-KCNG 147 >UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6_BACP2 Length = 240 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+T ILI +DE ++ + + EG+ +++A E ++ DI+L+++D+ +PG Sbjct: 1 METAKILIADDEEAIVKMVERVLKKEGFKHIYKAYHADEALDVVKNEDIHLLLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 K+G + E+R+ + +LT R ++VDK+ G GADDYITKPFNP EL R + L+ Sbjct: 61 KSGFDVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLN 120 Query: 120 RT-MNLGTVSEERRSVESYKFNGWE 143 RT ++L +E +S Y + Sbjct: 121 RTYISLKEDQDEAQSPYEYAHFSYH 145 >UniRef50_Q137J5 Response regulator receiver n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J5_RHOPS Length = 232 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 11/165 (6%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGKN 61 P +L+VEDE + L + E EG V A+ AEM L I+ + +D+ LP + Sbjct: 6 PSVLLVEDEPFVQTLLAAYLEKEGVSVTAASTAAEMRAALRLPGQPIDAIALDLGLPDEE 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R+LR + N+ + T ++ + + E+G DDY+ KPF+PR+L LL R Sbjct: 66 GLALLRQLRTRLNIPICISTRDNSAASRNVAAELGVDDYLVKPFHPRQLIASLMRLLGR- 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + ER + +F GW LD +R L P G + +EF Sbjct: 125 ------NGERSA--PLRFEGWSLDNGARILTNPQGHPVPMTPAEF 161 >UniRef50_Q0TSV3 DNA-binding response regulator n=44 Tax=Bacteria RepID=Q0TSV3_CLOP1 Length = 222 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 98/165 (59%), Gaps = 8/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI+ED R L + GY+V TD + + + E + +L+++DINLP +G Sbjct: 3 RILIIEDTDTIREELTKLLTRYGYEVLAPTDFENILEYVKENNSDLILLDINLPYFDGYH 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R+ +NV ++ +T RD+++D+I+ + +GADD+ITKP+N + L R +LL RT +L Sbjct: 63 ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 SE+ E + +L++ S I G++ +L ++E + + Sbjct: 123 ---SEQ----EVLTYGDLKLNL-SNGTISCRGKEEELTKNELKIL 159 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP + Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + G + E ++ + ++ +GE L R+EFR + Sbjct: 137 RSAGGPAGEVIDIQDLEIR------PDAGVVRRNGEALHLTRTEFRLLC 179 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 73/119 (61%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP +L+VEDE L + E +G + A DG E Q + +LV++DI+LP +G Sbjct: 19 TPMVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + R +R ++V ++ +T ++VDK+L L +GADDY+ KPFNP E+ R R +L RT Sbjct: 79 VDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRT 137 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 3/127 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R N V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNL 124 + R + Sbjct: 121 IRRDQDF 127 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 1/133 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 HILIV+D L L+ I E EG+ V A G + +LS+ + NL+++DI +P +G Sbjct: 4 HILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMSGY 63 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++R + ++ ++FL+ + VDK++G EIGADDYITKPF+ EL R R L R Sbjct: 64 ELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYER 123 Query: 124 LGTVSEERRSVES 136 + +EE+ E+ Sbjct: 124 IRKHTEEQPEKET 136 >UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax=Proteobacteria RepID=B2SJA5_XANOP Length = 247 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/116 (38%), Positives = 72/116 (62%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIVEDE + + A G+ DGA+ +LV++D+ LP ++GL Sbjct: 21 HVLIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLLDLMLPNRDGLE 80 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + R+LR+++ V ++ +T R E+D++ G+EIGADDYI KPF+PRE+ R + +L R Sbjct: 81 ICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPR 136 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 4/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ + + F+G ++ N R ++ DG+ L EF +L Sbjct: 133 RYNGLKEQEKVLS---FDGLTINTN-RRMVENDGKPLTLTMKEFELLL 176 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL L Sbjct: 7 VLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 67 CRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAAD 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPR 163 + + K+ G E+ + R ++ E PR Sbjct: 127 PATNWQ-----LKYPGLEIRADIRKVLVDAAESEVTPR 159 >UniRef50_B7K6Q7 Two component transcriptional regulator, winged helix family n=7 Tax=Cyanobacteria RepID=B7K6Q7_CYAP7 Length = 241 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 74/130 (56%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +P IL+VED+ V + F+ + Y + A DG +I + ++ +LVI+DINLP Sbjct: 1 MASPKILVVEDDTVILELIFRFFKQKNYQLKTANDGRSALEIFTYFNPDLVILDINLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G L +++ +V +M LT R N DKI G GADDY+TKPF+ +EL R + LL R Sbjct: 61 IGYDLCERMQKSTDVYVMMLTSRINPEDKIQGFRRGADDYVTKPFDLQELEWRVKALLKR 120 Query: 121 TMNLGTVSEE 130 +S + Sbjct: 121 QARREVISSQ 130 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIV+DE R + E + EA +G E QIL ++++++D+ +P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +REQ++V ++FLT R +E DK+ GL++G DDYI KPF+P EL R ++ R Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ E F +D R + DG+ L EF +L Sbjct: 121 AYH------NKQKNEDLSFGPLVIDERGRK-VTVDGDPVVLTLKEFDLLL 163 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 79/117 (67%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+ +D+ + +K F+ EGY+V A +G E ++++ ++VI+D+ +P +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +++R +++V ++ LT + +++D+ILGLE+GADDY++KPFNPREL R + +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA 119 >UniRef50_UPI0001745063 two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745063 Length = 235 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +DE R + GYD EA DG + + + +++D+ +PG++G + Sbjct: 7 ILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVMMPGRDGFGV 66 Query: 66 ARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +ELRE ++ ++ LT + D+I GLE GADDY++KPF+P+EL +R + LL R Sbjct: 67 CQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQALLRRAA 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSL 151 +G+ SE + + +G +L++ + + Sbjct: 127 TVGSGSELKEGPFEFDLSGVKLNLGGQPM 155 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 76/120 (63%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M I++V+DE R+ + E EGY V +A +G + ++L + ++L+I+DI +P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ ++RE+ N+ ++ L+ + ++DKI GL GADDY+TKPFNP EL R ++ L R Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 >UniRef50_A4EGJ5 Two component transcriptional regulator, winged helix family protein n=4 Tax=Rhodobacteraceae RepID=A4EGJ5_9RHOB Length = 236 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 4/163 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P + +++D R+ L E G+ V A+ Q + I+D+ LP +G Sbjct: 4 APLVTVLDDTPEIRSILSDALEQAGFRVRSFGRAADFEQACKTITPDACIIDLGLPDSDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L Q++V ++ ++GR DKI+GLE+GADDYI KPF E+ R R +L RT Sbjct: 64 LALVHRFASQSDVPILIISGRSRTQDKIVGLELGADDYIIKPFEVEEVIARLRVILRRT- 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSE 165 N +V + ++V+ F GW D+N L GE L +E Sbjct: 123 NAESVKSDAKTVQ---FCGWTADLNLLQLTKETGENQSLTFAE 162 >UniRef50_B2V1N0 DNA-binding response regulator n=10 Tax=Firmicutes RepID=B2V1N0_CLOBA Length = 223 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 99/164 (60%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I+IVED++ R+ LK++ GY+V D + + E + +L+++D+NLP +G + Sbjct: 4 IMIVEDDVTIRDELKNLLNRYGYEVSIIDDFSNAVNHIVESNCDLILLDVNLPVFDGYHI 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RE+R+ ++ ++ +T RDNE+D+++ + +GADD+ITKP+N + L R ++L RT Sbjct: 64 CREVRKNLDIPIIIVTSRDNEIDELMSMNLGADDFITKPYNTQILLARISSILKRTY--- 120 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ S E K+ LD+++ S + + + +L ++E + + Sbjct: 121 ---KKNDSSEILKYKDLILDLSNGS-VSYNNKYCELTKNELKIL 160 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 9/166 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE L+ EGYDV A DG + E + +L+++D+ LPGK+GL Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62 Query: 65 LARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + RELR ++ LT + E +K++GLEIGADDY+TKPF +EL R + LL R Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRR--- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +E+ F E+D +R + G+ +L EF+ + Sbjct: 120 ----ASGDTDLETCSFGDVEVDF-ARGELRLKGKAVELTPIEFKLL 160 >UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrionales RepID=B7VQ15_VIBSL Length = 234 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/120 (38%), Positives = 72/120 (60%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P ++IVED+L + LK F A+ ++V DG++ Q + + ++V++D+ LP Sbjct: 1 MTKPKMIIVEDDLKLQQMLKDYFVAQDFEVTALDDGSDAVQTILDDQPDIVLLDLMLPVT 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + R+ R ++ LT D++ D + GLE GADDY+TKP PR L R R+LL R Sbjct: 61 DGLTICRQTRTLFKGKILMLTASDDDFDHVAGLETGADDYVTKPIKPRVLLARVRSLLRR 120 >UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomonadaceae RepID=A4VMA3_PSEU5 Length = 225 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+++D+ L S EG+ DG Q L++Y V++D+ LP +GL L Sbjct: 4 LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63 Query: 66 ARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ++LR E ++ ++ L+GR +D+ILGLE+GADDY+ KP +PRELT R R +L R+ Sbjct: 64 LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123 Query: 125 GTVSE 129 S+ Sbjct: 124 AAPSQ 128 >UniRef50_A7B7I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7I6_RUMGN Length = 140 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 84/138 (60%), Gaps = 2/138 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +L++ED+ R ++ + E+E Y V EA +G ++LS+ + +LVI+DI +PG Sbjct: 1 MKKEQVLLIEDDADIREGVRILLESENYCVEEAENGKSGLELLSD-ETDLVILDIMMPGM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL E+R+ +NV ++FLT + E DK++GL G DDY+ KPF+ EL R + LL R Sbjct: 60 SGLRTCEEIRKVSNVPVLFLTAKAQESDKLIGLMAGGDDYLAKPFSYAELLGRVKALLRR 119 Query: 121 -TMNLGTVSEERRSVESY 137 + G +E R E Y Sbjct: 120 YNIYRGRNNEVREEAEPY 137 >UniRef50_C7QI13 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=C7QI13_CATAD Length = 241 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 71/117 (60%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILIVED+ ++ ++EGY A D + + + +LV++D+ LPG +GL Sbjct: 4 YILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGADGLT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R LR + ++ +T R E D + GL++GADDY+TKP++PREL R R +L R+ Sbjct: 64 ICRWLRRRGETPVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVLRRS 120 >UniRef50_C7LNV6 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LNV6_DESBD Length = 229 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 17 NTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVA 76 T+K+ E +G+ V ATDGA + +LV++D+ LP +G+ + + LR + V Sbjct: 17 TTVKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDSEVP 76 Query: 77 LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVES 136 ++ L+ RD DK+LGLE GADDY+ KPFN EL+ R R +L R T + +R Sbjct: 77 VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136 Query: 137 YKFNGWELDINSRSLIGPDGEQYKLPRSEF 166 + E I G Q +L R+EF Sbjct: 137 LDYRSHEATIQ--------GRQVRLTRTEF 158 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 246 2e-64 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 245 5e-64 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 241 8e-63 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 240 2e-62 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 238 6e-62 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 235 6e-61 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 234 9e-61 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 233 2e-60 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 232 3e-60 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 231 6e-60 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 231 6e-60 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 230 1e-59 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 230 1e-59 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 230 2e-59 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 230 2e-59 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 229 3e-59 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 228 4e-59 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 228 5e-59 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 228 6e-59 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 228 7e-59 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 227 1e-58 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 227 1e-58 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 227 1e-58 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 227 2e-58 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 226 2e-58 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 226 2e-58 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 225 5e-58 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 225 5e-58 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 225 5e-58 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 225 5e-58 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 225 5e-58 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 225 6e-58 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 224 7e-58 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 224 1e-57 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 224 1e-57 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 223 1e-57 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 223 1e-57 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 223 1e-57 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 223 2e-57 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 223 2e-57 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 223 2e-57 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 223 2e-57 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 223 2e-57 UniRef50_C4L340 Two component transcriptional regulator, winged ... 222 3e-57 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 222 3e-57 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 222 5e-57 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 221 6e-57 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 221 8e-57 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 221 8e-57 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 220 1e-56 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 220 1e-56 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 220 1e-56 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 220 1e-56 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 220 1e-56 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 220 1e-56 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 220 2e-56 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 220 2e-56 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 220 2e-56 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 219 3e-56 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 219 4e-56 UniRef50_B6R185 Response regulator in two-component regulatory s... 218 4e-56 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 218 5e-56 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 218 5e-56 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 218 5e-56 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 218 5e-56 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 218 8e-56 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 218 8e-56 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 217 1e-55 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 217 1e-55 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 217 1e-55 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 217 2e-55 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 216 2e-55 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 216 2e-55 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa... 216 3e-55 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 216 3e-55 UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) ... 216 3e-55 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 215 3e-55 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 215 3e-55 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 215 3e-55 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 215 4e-55 UniRef50_C7RI96 Two component transcriptional regulator, winged ... 215 4e-55 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 215 5e-55 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 215 5e-55 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 215 5e-55 UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ 215 6e-55 UniRef50_B8G179 Two component transcriptional regulator, winged ... 215 7e-55 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 215 7e-55 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 214 8e-55 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 214 8e-55 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 214 8e-55 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 214 9e-55 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 214 1e-54 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 213 1e-54 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 213 1e-54 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 213 1e-54 UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heli... 213 1e-54 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 213 2e-54 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 213 2e-54 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 213 2e-54 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 213 2e-54 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 213 2e-54 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 213 2e-54 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 213 2e-54 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 213 2e-54 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 213 3e-54 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 212 3e-54 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 212 4e-54 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 212 4e-54 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 212 5e-54 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 212 5e-54 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 212 5e-54 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 212 5e-54 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 212 6e-54 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 212 6e-54 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 211 6e-54 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 211 6e-54 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 211 7e-54 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 211 8e-54 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 210 1e-53 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 210 1e-53 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 210 2e-53 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_C3JXL3 Oxidative stress related two component system, t... 210 2e-53 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 210 2e-53 UniRef50_A0L527 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 209 3e-53 UniRef50_B8I272 Two component transcriptional regulator, winged ... 209 4e-53 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 208 4e-53 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 208 4e-53 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 208 5e-53 UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenel... 208 5e-53 UniRef50_A4AL32 Putative two-component system response regulator... 208 5e-53 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 208 5e-53 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 208 5e-53 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 208 6e-53 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 208 6e-53 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 208 7e-53 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 208 7e-53 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 208 9e-53 UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacte... 207 9e-53 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 207 9e-53 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 207 1e-52 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 207 1e-52 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 207 1e-52 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 207 1e-52 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 207 1e-52 UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein... 207 1e-52 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 207 1e-52 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 207 2e-52 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 207 2e-52 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 207 2e-52 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 206 2e-52 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 206 2e-52 UniRef50_C4RGF6 Two-component system response regulator receiver... 206 2e-52 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 206 3e-52 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 206 3e-52 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 206 3e-52 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 206 3e-52 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 206 3e-52 UniRef50_A7HP70 Two component transcriptional regulator, winged ... 206 3e-52 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 206 3e-52 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 205 3e-52 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 205 4e-52 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 205 4e-52 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 205 4e-52 UniRef50_C4L703 Two component transcriptional regulator, winged ... 205 4e-52 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 205 5e-52 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 205 5e-52 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 205 5e-52 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 205 5e-52 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 205 5e-52 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 205 5e-52 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 205 6e-52 UniRef50_A4J267 Two component transcriptional regulator, winged ... 205 6e-52 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 205 6e-52 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 205 7e-52 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 205 7e-52 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 205 7e-52 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 204 8e-52 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 204 9e-52 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 204 1e-51 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 204 1e-51 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 204 1e-51 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 204 1e-51 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 204 1e-51 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 204 1e-51 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 204 1e-51 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 204 1e-51 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 204 1e-51 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 203 2e-51 UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholde... 203 2e-51 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 203 2e-51 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 203 2e-51 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 203 2e-51 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 203 2e-51 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 203 2e-51 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 203 3e-51 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 203 3e-51 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 202 3e-51 UniRef50_Q11E93 Two component transcriptional regulator, winged ... 202 4e-51 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 202 4e-51 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 202 4e-51 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 202 4e-51 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 202 4e-51 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 202 5e-51 UniRef50_A9B2W4 Two component transcriptional regulator, winged ... 202 5e-51 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 202 5e-51 UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=... 202 5e-51 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 202 6e-51 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 202 6e-51 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 201 7e-51 UniRef50_B8I014 Two component transcriptional regulator, winged ... 201 7e-51 Sequences not found previously or not previously below threshold: UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 222 4e-57 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 213 2e-54 UniRef50_B8G223 Two component transcriptional regulator, winged ... 213 3e-54 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 212 4e-54 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 210 1e-53 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 209 3e-53 UniRef50_D1C280 Two component transcriptional regulator, winged ... 208 4e-53 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 208 5e-53 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 208 6e-53 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 207 1e-52 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 206 2e-52 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 206 3e-52 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 205 6e-52 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 205 6e-52 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 205 7e-52 UniRef50_A4XLT7 Two component transcriptional regulator, winged ... 204 8e-52 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 204 1e-51 UniRef50_D1C683 Two component transcriptional regulator, winged ... 204 1e-51 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 203 2e-51 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 203 3e-51 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 202 3e-51 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 202 4e-51 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 202 4e-51 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 202 4e-51 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 201 6e-51 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 201 6e-51 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 246 bits (630), Expect = 2e-64, Method: Composition-based stats. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML Sbjct: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 245 bits (626), Expect = 5e-64, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 4/173 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLG---TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L +E + +F GW LD R L+ PDG L +E+R + Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLL 173 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 241 bits (616), Expect = 8e-63, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 101/166 (60%), Gaps = 1/166 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP ++GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R + Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S E + F+GW +D R L P G + L +EF + Sbjct: 135 ALNAS-ENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLL 179 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 240 bits (613), Expect = 2e-62, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 99/168 (58%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+ Sbjct: 79 EDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKS 138 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R Sbjct: 139 GIEICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N S R SY+F GW LD R L P + +L +EF + Sbjct: 199 ENNRAPS--RPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLL 244 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 238 bits (608), Expect = 6e-62, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T++ SE+ F GW LDI R L PDG +L R EF + Sbjct: 121 TLSAREASEDENQK---SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLC 167 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 235 bits (600), Expect = 6e-61, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++E S E +F ++ +R ++ + E +L EF + Sbjct: 121 QVAIQAKESLS-EVIEFPDLKIYPKTRCVLVCENE-VELTVKEFEVL 165 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ E E Y + EA +G E E + +L+++D+ +PG + Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R++RE+ ++ LT + E +++ G E G DDYI KPF+PRE+ +R + LL R Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + F+ +D ++ + DG + L E+ + Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTA-DGTEVSLTPKEYELL 171 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 233 bits (596), Expect = 2e-60, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 100/165 (60%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + F GW LD ++R + P+G L S++ + Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVL 170 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 232 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ELD SRS + G+ L R EF + Sbjct: 124 HRFTV-----DQSATLTIGKLELDTESRS-VHVSGKPISLTRKEFDLL 165 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 231 bits (591), Expect = 6e-60, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILI +DE + ++ E EGY V +A DG E I+ I+LV++DI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R + ++ ++FL+ + ++ DK+ GL +GADDY+TKPF P EL R L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + L S + + G +D R+ + GEQ +L EF + Sbjct: 121 FLTLNQPK-VAESKSALEVGGVVIDPERRT-VDVYGEQIELTPKEFDIL 167 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 231 bits (591), Expect = 6e-60, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++ Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR- 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + + V F G+ LD R L+ PDG Q L +EF + Sbjct: 135 -GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLL 181 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 230 bits (589), Expect = 1e-59, Method: Composition-based stats. Identities = 69/171 (40%), Positives = 99/171 (57%), Gaps = 3/171 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q HILIVED+ R L G+ DG+++ + + +LV+MD+ LPG++ Sbjct: 10 QRDHILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGED 69 Query: 62 GLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL L R LR A++ ++ LT R E D+I+GLE+GADDY+ KPFNPREL R +++ Sbjct: 70 GLTLTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVM 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + V+ Y+F+GW LDI SR L PDGE L R E+ + Sbjct: 130 RRARSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELL 180 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 230 bits (588), Expect = 1e-59, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRV 126 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ E +F +D++ ++ G++ L SEF+ + Sbjct: 127 H-----ADSEPQREVLEFGELTIDVSGHKVL-VGGKEVDLTASEFKLL 168 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 1/170 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L+RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ V+ + F+GWEL R+L+ P G L +EFR + Sbjct: 149 RSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLL 198 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 230 bits (587), Expect = 2e-59, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIVED+ + L + + G++ GA M +++ +L+++D LPG++ Sbjct: 11 NQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGED 70 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++L R Sbjct: 71 GFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA 130 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ F+GW +D SR L DG Q + +EF +L Sbjct: 131 SYAHH---QEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILL 176 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 229 bits (585), Expect = 3e-59, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 93/169 (55%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +ER + +FNGW LD R L P + EF +L Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLL 190 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 228 bits (584), Expect = 4e-59, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 2/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +IL+V+DE + ++ + EG+ ++++ +G + + + + L I+D+ LP +G Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +RE N ++ LT ++ E+DKI GL +GADDYITKPF P EL R + L R Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +V E + F+G LD+++ + ++ L EF + Sbjct: 124 NSV-EPNQEEHLIAFSGLILDMDTHECTL-NEKKISLTPKEFSIL 166 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 228 bits (583), Expect = 5e-59, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++ Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S +F W L+ R L+G DG L +EFR + Sbjct: 123 TPASEGASSLLE-GSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLL 169 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 228 bits (582), Expect = 6e-59, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 93/167 (55%), Gaps = 1/167 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G+ Sbjct: 28 PHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGI 87 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 88 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T E S Y+F GW L+ + R L+ P G + L E+ +L Sbjct: 148 NETPGRES-SARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLL 193 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 228 bits (582), Expect = 7e-59, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 1/165 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP +G+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL RT + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E + + +F E+D ++ ++ D ++ L E+ ++ Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLA-DNQEVNLTPKEYELLI 168 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 6/169 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + L+ E + + V A++ E + + ++ +I+DI +PG+ Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R +++V ++FL+ R +VDKI GL +G DDYI K +P E+ R + +L R Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S + + +F L++ +R L DG+ L E+ + Sbjct: 121 S-----ASNQPPTETILEFGHLTLNLTTREL-AVDGKNVMLTPKEYELL 163 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V E+ ++ ++ F +D++ R +I GE+ EF ++ Sbjct: 150 LQPKPKV-EDEAALRTFVFEQLTIDLDKREVI-VAGEKVSFRPKEFDLLV 197 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 227 bits (579), Expect = 1e-58, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 7/170 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R + N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 TM S+ + F +D S + + GE L EF ++ Sbjct: 191 TMPRSEASD-----GTMTFGELTIDTASHT-VRVAGEDVSLTPKEFDLLV 234 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + LG+ + + F G +DI+ ++ ++ L E + Sbjct: 121 FLVLGSNANTQEKT-ILTFKGLTIDISKY-IVTVGDKEISLTGKELELL 167 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 226 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++ Sbjct: 3 NNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGED 62 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L Sbjct: 63 GLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L + + F W+LD +R L+ G L +E+R + Sbjct: 123 RARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLL 172 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 226 bits (577), Expect = 2e-58, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 100/166 (60%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +Y+F+GWEL++ +R L P G +L EF + Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLL 172 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIV+DE R + E + EA +G E QIL ++++++D+ +P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +REQ++V ++FLT R +E DK+ GL++G DDYI KPF+P EL R ++ R Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ E F +D R + DG+ L EF +L Sbjct: 121 AYH------NKQKNEDLSFGPLVIDERGRKVT-VDGDPVVLTLKEFDLLL 163 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R L Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---L 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S K LD NSRSL G +L +E++ + Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLT-IAGTPVELTPTEYKLL 162 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + + + F W+LD +R LI DG L +E+R + Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLL 173 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 3/171 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILI ED+ + EGY + +A DG E +++ I+LVI+DI +P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE Q + ++FL+ + ++ DKI GL +GADDY+TKPFNP EL R L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 120 RTMNLG-TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L V+ + + G +D R++ + L EF + Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDR-IDLTPKEFDIL 172 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 3/170 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT G ++ +F GW LD ++R L+ PDG L +E+R + Sbjct: 121 RTE--GGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLL 168 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 92/168 (54%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + F GW LD+ R L D L EF +L Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLL 168 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 224 bits (573), Expect = 7e-58, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ + F+G ++ N R ++ DG+ L EF +L Sbjct: 133 RYNGLKEQEK---VLSFDGLTINTNRR-MVENDGKPLTLTMKEFELLL 176 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M I++V+DE R+ + E EGY V +A +G + ++L + ++L+I+DI +P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ ++RE+ N+ ++ L+ + ++DKI GL GADDY+TKPFNP EL R ++ L R Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V + + + + ++ + + ++ +L EF + Sbjct: 121 YKKFN-VQNGYINDDIIEIDELTINTATHE-VQVGEKKVRLTPREFDIL 167 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +ILIV+DE + ++ + EG+ V++ G E + + ++++ I+DI LP +G Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+ ++ LT + ++DKI+GL IGADDYITKPFNP E+ R + L R M Sbjct: 62 FHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYM 121 Query: 123 NLGTVSEERR-SVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E++ V Y G ++ + G++ L EF + Sbjct: 122 RYNNSYEQQSIIVNEYDIKGLIINKETHKC-SLFGKEVALTPIEFSIL 168 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 223 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++ Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N + F ++L++ +R + D E L EF + Sbjct: 123 QAN-ELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVL 169 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 223 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + S++ + +E+D+ R+ + G++ L EF + Sbjct: 121 SDLSKSQKIVAP------PFEMDLVKRT-VKVKGKEVNLSYREFEIL 160 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 223 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+++D+ R+ L F + V DG + L + ++LVI+D+ LPG Sbjct: 1 MSPHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGD 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R+ R+ + V ++ LT +E DK++GLE+GADDY+ KPF+ REL R + LL R Sbjct: 61 DGFTLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E R FNGW+LD+ R LI P + L EF + Sbjct: 121 NQIVQSPGTEAR---FLCFNGWKLDLVRRELIDPQKQSEPLSGIEFTLL 166 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 98/166 (59%), Gaps = 1/166 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + L Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S + ++ +F ++ + ++ G++ KL E+ +L Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFL-GKELKLTPIEYEILL 167 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T ILIV+D+ R+ L+ +G +V D A + + L +L+++D+ +PG +G Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L R+LR + + ++ LT R ++VD+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + E + F + LD +R+L DG+ L SEF + Sbjct: 186 RATPSAAAPEQR-EPFAFGRFVLDFQARTL-SIDGKPATLSSSEFALL 231 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 223 bits (569), Expect = 2e-57, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ R L EGY + A DG + + +LVI+D+ LPG Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R +++V ++ LT R +E DK+ GLE GADDY++KPF REL R + LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + +E + K E+ I R L+ +G EF Sbjct: 147 SQTQNSQTE---TTGGLKIGDLEIFIE-RHLVMRNGVALDFSPKEFDL 190 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 223 bits (569), Expect = 2e-57, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT- 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N S + FN +D+N R I D E+ +L EF + Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQ-IYKDNERIRLTGMEFSLL 178 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 223 bits (569), Expect = 2e-57, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+VED+ R + + G+ DG EM + + +L++MD+ LPG +G Sbjct: 19 APYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR+ + V ++ ++ R E+D++LGLE+GADDYI KPF +EL R R +L R Sbjct: 79 FDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-- 136 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ F GW++D+ R L P G L +E+ +L Sbjct: 137 GPVNEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLL 184 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 222 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P +GL Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT + Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ +DI R + G+ L R EF + Sbjct: 127 S-----KEQEATFDVGILSIDIEGR-AVSVKGKTVNLTRKEFDLL 165 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 222 bits (567), Expect = 3e-57, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 3/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++ + E + V++ D E + + +++L ++DI +P +G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L +++RE+ N ++ LT + E+DKI GL +GADDYITKPF P E+ R + L R Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ E + G L+ + + L +EF + Sbjct: 190 RYNMGT--VKAEEILEHKGLILNKKTHECFL-NERLLSLTPTEFSIL 233 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 222 bits (567), Expect = 4e-57, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 1/167 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + ILI++DE + L+ + E Y V++ + + DI+L I+DI LP NG Sbjct: 19 SEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + +R++ ++ LT + E DKI GL +GADDY+TKPF P E+ R + L R Sbjct: 79 FSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +N L++ + + DGE L +EF + Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHECLL-DGELVSLTPTEFSIL 184 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 222 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + V + Y+F + LD SR L D ++ L +++ ++ Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKE-SLSGADYNLLM 171 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 221 bits (565), Expect = 6e-57, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 7/169 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D+ R L++ G+ V DG L +LVI+D+ LP ++G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 64 LLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 L R +R+ QA V ++ LT +E D+++GLE+GADDY+ KPF+PREL R + LL R Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + F+ W LD S L DGE+ L ++F + Sbjct: 145 SE----FGQAAPGSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALL 189 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 221 bits (564), Expect = 8e-57, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE +KS EGY+V A +G E + +L+++D +P +G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R+++ + ++ LT + EVDK++G E G DDY+ KPF+ REL+ R + +L R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE-- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ L + R + G+ L +EF+ + Sbjct: 122 ---AKTINEEIVLTEGDLTLYPHKREVFLK-GKPLDLTPTEFKLL 162 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 221 bits (564), Expect = 8e-57, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + L VS + + G EL+ +++ +I DGE K+ EF+ + Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVIL-DGELIKVTPIEFKIL 169 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 5/170 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M IL+V+DE + +K+ E +G+DV A DG I S +I+L+++D+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++V ++ LT + E +KI G+ +GADDY+TKPF+ REL +R R LL Sbjct: 61 MTGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + + ++ E+DI + ++ G L +EF+ + Sbjct: 121 RAYRDFSPMAD---ILTFNNGDLEVDI-KKMVVKKQGVVVNLTTNEFKIL 166 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG +GL Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V E+ +V + G +++N+ + +Q L +EF + Sbjct: 124 SGVKEQNENVIVHS--GLVINVNTHECYL-NEKQLSLTPTEFSIL 165 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D + L E + V A +G EM + L +L+I+DI LPG Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L ++LR Q+ V ++ LT ++ D+I GLEIGADDYITK FNPREL R + LL R Sbjct: 69 DGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRR 128 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E + KF W D R L DGE L +++ + Sbjct: 129 STFSHSQGER-----TLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLL 172 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + + F W+LD +R L+ G L +E+R + Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLL 172 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + LD +SR + G KL SEF + Sbjct: 123 --NTPQEESKRITEGPIILDEDSRE-VSVGGNSLKLTPSEFMIL 163 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T IL+++D+ L + EGY + A G + + + + +LV++D+ +PG Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +RE + V ++ LT + E D+ILGLE+GADDY+ KP++ REL R + LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E+ + NG EL+ ++ + DGE + SEF+ + Sbjct: 121 IELDKNQKEDDNGI--LACNGVELNFDTYRVYS-DGEHIPMTTSEFKVL 166 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 110/168 (65%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+G Sbjct: 8 MPHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 68 LTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++F GW L+ + R L+ PDG +LP+ EF+ ++ Sbjct: 128 QCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLM 175 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 2/164 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R + Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + ++ S I GE +L EF Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYS-IKKRGEDIELTHREFEL 165 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 97/165 (58%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ + E + V A G M QIL + I++V++D+ LP ++GL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L R +L Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + SY F+GW +D SR+L P G + L E + Sbjct: 126 PETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALL 170 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 219 bits (560), Expect = 3e-56, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 8/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG Sbjct: 1 MQ-PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 60 DGMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S +F E+D ++R G+ +L +EF ++ Sbjct: 120 RRGKPVKSS------VMRFTHVEIDPDAREARAA-GQLLELTPTEFDLLI 162 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 219 bits (559), Expect = 4e-56, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIV+D+ + + EG+ V A +G E +I++ I L I+DI +P Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L R +RE+ ++ +MFL+ + ++VDK++G GADDYI KPF+ E R + L R Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + G E+D SR+++ GE L ++E+ + Sbjct: 136 YTYFNQNAVQVIE-KKISIRGLEIDEVSRTVMLY-GETINLTKTEYDIL 182 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 218 bits (558), Expect = 4e-56, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + +LIV+D+ + + GY VF A E ++L I+L+++DI LPG+ Sbjct: 3 LSNKTLLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGE 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL L + +R+ + + ++ ++ + ++I+GLE+GADDY+ KPFNPREL R + R Sbjct: 63 NGLTLCQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T ++ T + + + ++F+GW+LD +R L PDG L SEF A+L Sbjct: 123 TEDVETAAAPK--AQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALL 170 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 218 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP IL+V+D+ R L E + + V A AE+ Q L+ I+LV++D+ LP + Sbjct: 33 QTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGS 92 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL R+LR + N + ++ LT +VD+ILGLE+GADDY++KPFNPREL R R +L R Sbjct: 93 GLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR 152 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ Y+F G+ D RS++ P G +L +EF + Sbjct: 153 RSETPAPVGASRA---YRFEGFVADPQVRSVVDPTGTAIELTGAEFDLL 198 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 218 bits (557), Expect = 5e-56, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 7/169 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE R L + GY+V A DG Q + +LV++DI LP +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQ--RAPEADLVLLDIMLPEVDGLE 59 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R+L+ + + + ++ LT + E+D++LGLE+GADDY+ KPF+ REL R + +L R+ Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 122 MNLGTVSEERRS-VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ S E + ES G LD +S D + L E+ + Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHD-KTIALTPKEYELL 167 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 218 bits (557), Expect = 5e-56, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 91/169 (53%), Gaps = 10/169 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG Sbjct: 22 MKT--VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGM 79 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R Sbjct: 80 DGLEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S E + ELD +R+ GE+ L RSEF M Sbjct: 140 -------SSEPLPNAVLRAGELELDPTTRT-FLVRGERVDLTRSEFELM 180 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 218 bits (557), Expect = 5e-56, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 4/172 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG + Sbjct: 3 KAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL R Sbjct: 63 GWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRR 122 Query: 122 MNLGTV---SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++E + F L R + GE L E+ +L Sbjct: 123 SSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAV-VKGETLSLSPLEYDLLL 173 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 218 bits (556), Expect = 8e-56, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG- 59 M+ ILIV+DE +K A GY V A DG ++L +L+I+DI LPG Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + + +RE +++ ++ LTGR E D+I G + GADDY+TKPF+ EL +R + +L Sbjct: 61 LNGFEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ SEE YKF ++ + + G + +L +E++ + Sbjct: 121 RSH----PSEEFPKGPVYKFGDLVINFAQKRVFVR-GREVRLTATEYQVL 165 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 218 bits (556), Expect = 8e-56, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 5/174 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N+ + + + W + S I G+ +L R E+R + Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQ-IQYHGQILQLTRYEYRLLF 174 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 217 bits (554), Expect = 1e-55, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R S + F GW LD+ R L PD E L EF + Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLL 170 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 217 bits (553), Expect = 1e-55, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 5/166 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +GL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE- 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L R G +L E+ + Sbjct: 121 ---AASRQDRAGRLVVGDLVLHPRQRRA-EVAGRPLELTAREYDLL 162 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 217 bits (553), Expect = 1e-55, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + LK + +V A DG E + + +++++DI LP +GL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE +NV ++ LT + +++DKILGL+ GADDYITKPFN E+ R + +L R Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN--- 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++++ + K ++D +SRSL D ++ L EF + Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIAD-KEINLTAKEFDLL 173 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 217 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 90/164 (54%), Gaps = 4/164 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + G L + + + +G+ +L +EF+ + Sbjct: 127 NNNPNSGQINV---AGVVLHV-AHQKLEIEGDSLELSSTEFKLL 166 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 3/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 65 LARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R LR+ + ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R + Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + VE F W LD+++R+L +G+ L EF + Sbjct: 142 -EVPGAPSQQVEVVSFGSWALDLSTRTLT-REGQVVTLTTGEFAVL 185 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 8/168 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +G Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + FNG ++ S + +GE+ L E+ ++ Sbjct: 122 TLNDKN-------ILDFNGLTINKLSHE-VKLNGEELLLSPKEYDLLI 161 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP + Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT Sbjct: 64 GEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N G + + ++D+ D E +L +EF+ + Sbjct: 124 NNEGL----KAHLIELNGGDLKVDLRDMETWKKD-ELVELTATEFKLL 166 >UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKJ7_9BACT Length = 223 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 87/142 (61%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P ILIVEDE + ++ + EG+ A+ A+ + L+E INL+I+DI LP NG Sbjct: 1 MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R+LR N+ ++ LT R +EVD+I+GLEIGADDY+TKPF+PREL+ R +++L RT Sbjct: 61 FDFCRKLRASQNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLRRTQ 120 Query: 123 NLGTVSEERRSVESYKFNGWEL 144 N + +++ K + Sbjct: 121 NSFEIESPKQAEGKLKVDSNTF 142 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 89/166 (53%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRAD 147 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +F W L+ R L+ + L +EFR +L Sbjct: 148 VRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLL 193 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ILI +DE + L E EGY +A +G EM I+++ ++LV++D+ +P + Sbjct: 4 NQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ RELR + ++ +T + +E D++ GL GADDYI KPF+P+EL R + R Sbjct: 64 GMEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRN 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + S E ++ ++++NSR + DGE L R EF ++ Sbjct: 124 YGYN----DDESKEELQYKSIKVNLNSRKVF-IDGEAVSLTRKEFDLLV 167 >UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) n=161 Tax=Bacteria RepID=Q5MDG2_ECOLX Length = 207 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 151/151 (100%), Positives = 151/151 (100%) Query: 20 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 79 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF Sbjct: 1 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 60 Query: 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 139 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF Sbjct: 61 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 120 Query: 140 NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 NGWELDINSRSLIGPDGEQYKLPRSEFRAML Sbjct: 121 NGWELDINSRSLIGPDGEQYKLPRSEFRAML 151 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 215 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NG Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S ++ +F+ +E + R+L D ++ L EF + Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEFSLL 168 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 215 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + T + + ++D N R + + E+ +L EF + Sbjct: 124 DKI-TTNLGVPNSGIISIGFLKIDTNKRQVY-KNNERVRLTGMEFSLL 169 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 215 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R LK+ E + + A+DG E ++E++ +L+I+D+ LP +G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R+ ++ LT + E DK+ G GADDY+ KPF+ REL R + +L R+ Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+ + Y+ ++ N ++ +G L R+EF ++ Sbjct: 122 Q----KAEKAEIFVYQDGRLKIHPNRMKVL-VNGRDADLTRTEFNILV 164 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 215 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ L+ E + + V A D E I ++ I +++DI +PG+NG L Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R ++ V ++FL+ R ++VDKI GL +G DDYI K +P E+ R + +L R+ Sbjct: 67 CRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRS---- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L++++R ++ DG L EF + Sbjct: 123 -ATRRPMEERVLDYGRLRLNLSTREVV-VDGNNVVLTPKEFELL 164 >UniRef50_C7RI96 Two component transcriptional regulator, winged helix family n=4 Tax=Anaerococcus RepID=C7RI96_ANAPD Length = 227 Score = 215 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VED+ + ++ E E Y + AT + + + E + +L I+DI LPG+NG + Sbjct: 5 VLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGENGYYI 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++RE N ++ LT +D+E KI GL GADDY+TKPF P EL R + L R N Sbjct: 65 CAKIRESYNYPIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRRYNNYN 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++E + +L+I SR ++ DG++ L EF + Sbjct: 125 LKTKEGTG-NILTYQNVDLNIKSREVL-VDGQEIDLTPIEFIIL 166 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 7/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +E+ + LD R L+ GE+ ++ EF+ + Sbjct: 121 WKQMKSHAEQTA------ISALVLDKEKR-LVYSFGEEVEVTSKEFQVL 162 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 215 bits (548), Expect = 5e-55, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 100/174 (57%), Gaps = 6/174 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVES----YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T L V + + VES + G EL+ N++ + DG+ K EF+ + Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKE-VNIDGKYIKTTPIEFKIL 173 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 215 bits (548), Expect = 5e-55, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 7/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP Sbjct: 14 VKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKI 73 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 74 DGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +E Y+F +DI SR+ + E L EF ++ Sbjct: 134 QEKGEVKKDE------YQFRDLMVDIGSRT-VNRGEEVINLTPKEFDILV 176 >UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ Length = 396 Score = 215 bits (548), Expect = 6e-55, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ TR L+ + +GY DG + L +L+++D+ L GK+GL Sbjct: 4 HVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKDGLE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R+LR ++N+ ++ LT RD E D+++GLE+GADDY+ KPFNPREL R +++L R +L Sbjct: 64 LCRDLRTRSNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRARSL 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIG 153 + E + +KF+GW LD +R+L Sbjct: 124 PD-NLEPEAAAWFKFSGWVLDAATRNLTS 151 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 215 bits (548), Expect = 7e-55, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR-- 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S + E+ S ++ GEQ L EF + Sbjct: 121 ---EERRNSTPPPLSLTWGDLEIWPESY-MVTIKGEQVTLTGKEFELL 164 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 215 bits (548), Expect = 7e-55, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + K+ G E+ + R ++ D + ++ EF + Sbjct: 126 DPATN-----WQLKYPGLEIRADIRKVL-VDAAESEVTPREFDLL 164 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 9/173 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI +D+ R L+ E+EGY V EA DGAE + I+LV++DI +P +G Sbjct: 10 CILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQ 69 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +RE + + ++ ++ + + DKI+GL++GADDY+TKPFNP E R R+ L R + Sbjct: 70 VLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 125 --------GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R LD+++ ++ E L EFR + Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDA-CVLHRGDEPLDLTPVEFRML 181 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK 60 T +L+V+D+ TRN LK+ E Y+V A DGA + + ++LVI+D+ LP Sbjct: 11 TRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDT 70 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R Sbjct: 71 DGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRR 130 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + V KF G+ +D+ R L P G+ L +F + Sbjct: 131 MQ----LGAPGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLL 175 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 9/170 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDI-NLVIMDINLPGKNGL 63 +LIVED+ R+ ++ EG + DG ++LS+ +LV++D+ LPG +G+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 64 LLARELRE----QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + RELRE V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R L Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R S E+R +F G E+D+ R + GEQ +L EF + Sbjct: 123 RQRMNAQASPEQRK---LEFPGLEIDLLRRRVTAR-GEQVELTAREFEVL 168 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 214 bits (547), Expect = 9e-55, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED+ +K E E + V DG + E LV++D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++R + V ++ ++ + + DK+ +GADDY+TKPF+P ELT R + + R Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+R +F E+DI R + GEQ L EF +L Sbjct: 123 PQQEDR-----LQFIDVEIDIKGRRVFAR-GEQISLTAKEFELLL 161 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 6/172 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + EGYDV +A D E +++ +++ I+DI LPG Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G L R+LR + N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ R + + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R EER K G E+D+ + D ++ L EF + Sbjct: 145 FRRIQLSAQEREERPKKIVAK--GLEIDVERYEVKVHD-QKVSLTPLEFELL 193 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + F W LD +R L+ D L +E+R + Sbjct: 126 MLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLL 172 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 5/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++D+ + +EG+DV DG L + L ++DI +PGKNG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ +++ ++ LT R E+D+ILGLE+GADDY+ KP NPREL R R +L R+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS---- 118 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +E + +F E SR++ GE L +E+ + Sbjct: 119 DTQQESDDKQETRFGSLEWHPQSRTITEH-GEPVDLTATEYNIL 161 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+++D+ L + F GY + A +E L + I+D+ LP +G Sbjct: 18 MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDG 77 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RE+R+++++ ++ LT R +D+++GLE+GADDY+ KPF PREL R + +L R Sbjct: 78 FALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQR 137 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + F+G +D++ R ++ GE+ +L +EF + Sbjct: 138 STPAAANGNGTQHRV-FDGLSIDLDRRQVLRH-GERVELTGTEFELL 182 >UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF57_HELMI Length = 277 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 40/204 (19%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I I +DE ++ E EG++ T+G ++ ++ +LVI+DI +PG NGL Sbjct: 3 RIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNGLD 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + LR ++V ++ ++ +D+E+D+ILGLE+G DDY++KPF+PREL +R +N+L R + Sbjct: 63 VCKRLRRDSDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILRRVWHT 122 Query: 125 ---------------------------------------GTVSEERRSVESYKFNGWELD 145 + + +D Sbjct: 123 RAGNSADGGRHRGNEPTARSSPVVSDALQSAIGSSEAAQAATGTPTTVAPGFACHDLRID 182 Query: 146 INSRSLIGPDGEQYKLPRSEFRAM 169 ++ R + GP+GE L EF + Sbjct: 183 LDERRITGPNGE-IDLTAKEFDLL 205 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 213 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 1/169 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+V+D+ R L + GY+V A DG +M + L+ + LV++D+ LPG+ Sbjct: 1 MST-TLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGE 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R+L+ +A++ L+ + + +D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 60 DGLSLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L +EE +++ F G+ L+ R L PDGE LPRS++R + Sbjct: 120 PQRLDAQAEEPAVMDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVL 168 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 213 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR- 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E + ES G LD GP+G L EF + Sbjct: 123 ---GQMDAEPMAGESITAGGITLDEARHIAEGPNG-SIDLTPREFELL 166 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 213 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 93/164 (56%), Gaps = 4/164 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE RN L+ EG++V EAT+G E ++ + + +++++D+ LP +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+ +VA++ LT R DK+ GL IGADDY+TKPF P EL R +L+ R+ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 ++ RR + +F + R +I D + + EF Sbjct: 135 QSI---RRQEAALEFPHLRILPEGREVIIHD-HSVEFTQKEFDL 174 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I ++ED+ L F+ EG+DV +G + + + ++V++D+ +P +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 66 ARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +R + L+ LT + E+DKI+GLE+GADDY+TKPF+ REL R + LL R+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +L + + YKF ++ + G+ L ++F+ +L Sbjct: 124 SLHFPTAKPE----YKFGDLKISPEKFEVTIK-GQPVHLTTTQFKLLL 166 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE L + GY+V ATDGA+ + +++D+ LP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + ++LR++ ++ +T +++E DK+ GLE+GADDYITKPF+PRE+ R + ++ Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 120 RTMNLGTVSEERRSVESYK----FNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 RT V+ + + ++D N + +G+ L EF ++ Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYR-VARNGKNISLTPKEFELLV 174 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+DE R L +G+ + EA A +L ++ ++DI +PG++GL Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E ++ ++ LT R D+I+GLEIGADDY+TKPF PREL R R++L R Sbjct: 72 LTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V E Y F GW+LD R L PDG + +EFR + Sbjct: 132 PAVDAED---AFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRML 173 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 213 bits (543), Expect = 2e-54, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 1/165 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVEDE + L GY +G E+ + +L+++D+ LPGK+GL Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE++E +N+A++ +T R +E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T + + EL+ ++ +L EF + Sbjct: 123 LTTGINTNIAKQSQTTTVELNTDNYQATINQ-HPVELTAIEFNLL 166 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 213 bits (543), Expect = 2e-54, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 9/166 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPGKN 61 +L++EDE R+ LK+ E GY V A +G E + +E DI ++++DI LP + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 + ++ G +D++SR + DG++ +L EF Sbjct: 122 YG-------SQDDGKTEYQGIVMDVHSREVT-VDGKKIELTPKEFD 159 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 213 bits (543), Expect = 2e-54, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 9/179 (5%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M++ HI +++DE+ L + ++ G+ V + +G + ++ +LV++D+ LPG Sbjct: 1 MKSAFHIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G +AR +RE L+ +TGR + VDK++GLE+GADDY+TKPF+ REL R + +L Sbjct: 61 EDGFSIARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLR 120 Query: 120 R--------TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R + + S + +F GW+LD+ +RSL P G+ L EF + Sbjct: 121 RLAPDDAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLC 179 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 213 bits (543), Expect = 3e-54, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 9/173 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGL 63 HILIV+D L L+ I E EG+ V A G + +LS+ NL+++DI +P +G Sbjct: 4 HILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMSGY 63 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++R + ++ ++FL+ + VDK++G EIGADDYITKPF+ EL R R L R Sbjct: 64 ELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYER 123 Query: 124 LGTVSEERRSVES-------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +EE+ E+ KF E+ + S+ + ++ +L EF+ + Sbjct: 124 IRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCN-QKIELSTKEFQLL 175 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 213 bits (543), Expect = 3e-54, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T +L+V+DE ++ + + E Y++ A +G + + +LVI+D+ LP + Sbjct: 3 RTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLID 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +RE + V ++ L+ + +DK +G +GADDY+ KPF+P EL +R + LL R+ Sbjct: 63 GYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + R E++ S + G+ L EF + Sbjct: 123 FDKEQSVSKVRKTTKISKGELEINCESHEVFVR-GKPVYLTPKEFELL 169 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 212 bits (542), Expect = 3e-54, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ + E +D DG E EY NL+++D+ LPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + RE+R+ + + ++ L+ + DK+LGLE+GADDY+ KPF+ +EL R + +L Sbjct: 61 IDGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKF---NGWELDINSRSLIGPDGEQYKLPRSEFRA 168 R + + SE+ + E F ++ ++ S+ G+ ++P E Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYF-GDSIEMPPKELEL 171 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 11/173 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+ILIVED+ ++ E E + DG +I E +L+++D+ LP +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +R+Q + ++ LT + E+D+I+GL GADDY+ KPF+PREL R R LL Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG---EQYKLPRSEFRAM 169 R + G + Y+ N +++D++ G E+ +L EF + Sbjct: 131 RQLRQGQP-----VGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLL 178 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T +L+V+DE L EG+ TDG + + +++DI LP +G Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + + LR + + +M ++ + +E DK+L LE+GADDY+TKPF+PREL R + +L RT Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E Y + L + D E L E+ +L Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHEVY-KDKELLPLTPKEYELLL 176 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G+ Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R L Sbjct: 63 ATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKEL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G+ +++ E Y G L+ +S L+ DG++ L E+ + Sbjct: 123 GSQQKDQ---EVYMLGGITLN-DSLKLVNVDGKEISLTPVEYGIL 163 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R + V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R + + + + +D +S + D E LP EF + Sbjct: 121 IRRDQDF------KDKDKILEKGDLTVDAHSYKVFVKDNE-VDLPPKEFELL 165 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 4/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R+ + E G +G E I+L+I+DI +P +G Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++R+ + + ++FL+ RD E+DK+LGLEIG DDY+TKPF+PREL R + +L R+ Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRS- 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G +E R + LD R+++ D + EF + Sbjct: 121 --GNEAEPERRRAIFVAGELSLDRQGRTVMFGD-SAISMTVLEFAIL 164 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + EGY+ +DG + ++V++D+ LPG+NGL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R Q+ V ++ LT + + +D + GLE GADDY+TKPF P EL R R L R Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E E+ ++D+ + + DG L EF ++ Sbjct: 133 ----GETGQAENLSIGDVQIDVPAHQVT-RDGVPIALTPLEFDLLV 173 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P Sbjct: 1 MNN-NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L R Sbjct: 60 DGFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T L T + S + + +D + + E L EF + Sbjct: 120 TYFLNTKIQ--VSDDIIRIESMIIDKWKHKITIANNE-VSLTAREFEIL 165 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 212 bits (540), Expect = 6e-54, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR--- 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V + + ++ + D L +EF+ +L Sbjct: 122 ----PHEQVTNVSISNLSINPERLEALIGD-TLLALTPTEFKILL 161 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 212 bits (540), Expect = 6e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 1/167 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILI++D+ + + A +G + Q+L + + +L+I+DI LPG +GL Sbjct: 12 HILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLD 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 72 LCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQGD 131 Query: 125 GTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ ++ F+ W LD N+ SLI D L + E+ +L Sbjct: 132 LSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLL 178 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 211 bits (539), Expect = 6e-54, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 LIV+D++ R L + TDG +M Q L++ ++V++D+ LPG++GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 R LR +++ ++ LT R D+I+GLE+GADDY+ KPF PREL R + +L R + Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD--- 149 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E + +F+ W L+ R L DG L +EFR + Sbjct: 150 --ERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLL 190 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 211 bits (539), Expect = 6e-54, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE ++ + GYDV +DG + ++L + +L+++D+ LP +G Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + RELR+Q+N V ++ LT + DKI GL+ GADDY+TKPF+P+EL R + + R Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L +E ++ + R ++ DG +L EF +L Sbjct: 122 QTLPGQAE----STTFDIGRLTVRAEQREVL-IDGRTIELTPKEFELLL 165 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VEDE+ + S E GY+V A DG + E D ++VI+D+ LPG +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-TMNLG 125 R LR ++ ++ LT R +EVD ++GL +GADDY+TKPF+PREL R + +L R G Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ + F +D+ +R + D E L R+EF + Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRD-ELVPLTRTEFDLL 229 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 211 bits (539), Expect = 8e-54, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 68 LEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRAR 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + E LD+++R DG + L EF ++ Sbjct: 128 -----TSQPAEGEVLTDGALRLDLDARRGTL-DGGELALTGREFDLLV 169 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 4/171 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ IL++ED + E Y V +DGAE + + +L+I+DI LP Sbjct: 1 MQK-RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + ++ LT + +E D+++GLE GADDY+TKPF+ REL R + L Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 RT ++ ++ ++ F +D R L D ++ L EF +L Sbjct: 120 RT-DMSQKESTPQADDALHFGELCIDKTKRRLTIGD-KEITLTAKEFDLLL 168 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T ILIV+DE RN ++ +GY++ EA +G E + + + L+I+D+ +P Sbjct: 1 MDT-KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + E+R++ + ++ LT R DK+ GL+IGADDY+TKPF P EL R LL Sbjct: 60 DGWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 R V + + F+ ++D++ + D L EF Sbjct: 120 RA-----VVNQTTQTKQLHFHELKMDVDDHKVFVQDN-PVHLTPKEFE 161 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 210 bits (536), Expect = 1e-53, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIVED++ N +K EGYD+ +A G E + + ++VIMDI +P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ R +RE++ V ++ L+ + + DKI+GL +GADDYI KPF+ EL R + + R Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + + Y++ + D+N+ ++ G++ L E + + Sbjct: 121 AIYYNETKSIKEN-KIYEYGDVKFDMNNYTVT-KGGKELTLTAKEMKIL 167 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL V+D+ L+ EG++V A+ G E Q + +LVI+D+ +PG +G Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ++L+ Q V ++ L+ R EVD+++G +G DDY TKPF+P EL +R + +L R Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E K+ LD R+ + + + +L +F + Sbjct: 124 KVNLENM-----LKYGNLTLDYTKRT-VAVNNSKVELTPKQFELL 162 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+VEDE + L GY DG + +LV++DI LPG + Sbjct: 3 QERKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + RELR + + ++ +T R E+D++LGLE+GADDYI KPF+PRE+ R +L R Sbjct: 63 GTAVCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRM 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V + G + +G + L +EFR M Sbjct: 123 EWGNPVPASGPAQLEIDDAGLRI--------CINGNRLPLTPTEFRLM 162 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I IV+DE + ++TL S F+ G+ V A ++ ++++ I+ +++DI LP +GL L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++R ++V ++ +T R E D+I+GLE+GADDY+TKPF+PRE+ R + +L RT Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTR--- 130 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V++ R +F GW LD+ + L GE +L +EF + Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELL 174 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +E + +D +R+ G L EF + Sbjct: 177 VPGAE----AGVLRAGTLVVDAAARTATRH-GVPLGLTVREFDLL 216 >UniRef50_C3JXL3 Oxidative stress related two component system, transcriptional regulator n=3 Tax=Pseudomonas RepID=C3JXL3_PSEFS Length = 247 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 86/165 (52%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D R L + +DV A D A M Q+L ++V++D+ LP +G Sbjct: 11 RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L +L ++N ++ LT RDN D++ GL++GADDY+TKPF PREL R ++L R Sbjct: 71 LCNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSRN 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R +Y+F GW + +L +L +E R + Sbjct: 131 TGPAAPRSGARAYRFGGWHFSVTGATLRRDGSPAVQLSTAESRLL 175 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+ +DE R+ L+ E GY+V EA DG + +L +++ ++DI +P +G + Sbjct: 5 ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + LRE ++V ++ ++ + + +KILGL +GADDY+ KPFNP E R + R + Sbjct: 65 LKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGMA 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ +R + + ELD + +L +GE +L E+R M Sbjct: 125 -AAQPKRPAKVLRCRNLELDQEACALTC-NGEPVELTSVEYRIM 166 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 4/173 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ VTR L F GY A D M ++L+ I+LV++DINLPG++ Sbjct: 3 QRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPGRD 62 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + LR ++ + ++ ++ R EVD+I+GLE+GADDY+ KPFN REL R + LL R Sbjct: 63 GLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLLRR 122 Query: 121 ---TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + + SY+F+ W L ++R + DG Q +L EFR +L Sbjct: 123 IDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLL 175 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGK 60 + IL++ED+ + Y+V A G E IL E I+L+I+D+ LP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 61 NGLLLARELR-----EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + +++R + V ++ LT + + D++LGLE+GADDYI+KPF PREL R R Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L R + +S F + +S + D + +L +F+ + Sbjct: 122 AVLRRHEQPNQADSQS---DSLTFGRLSVFPDSHEVT-IDDKPVRLTTHQFQLL 171 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 4/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ +DE R+ ++ E +GY V A DG + I+LVI+D+ +P Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R+LRE+ +V ++FL+ R E D+ILGLE+G DDY+TKPF+PREL R + +L R Sbjct: 61 DGLNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + LD + L D ++ L +EFR + Sbjct: 121 VAARRGADDAPPA---LVYERLTLDPAAHEL-RVDDDKIALTVTEFRVL 165 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + + +G++ DG + ++ +LV++D+ LPG +G Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R +++V ++ LT + + D + GLE GADDY+ KPF P EL R R L Sbjct: 91 IEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--- 147 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++++ E+ + +D+ L+ GE+ L EF ++ Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGH-LVTRGGERISLTPLEFDLLV 189 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL---- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E R + E+D N+ ++ DGE L +EF+ + Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVT-RDGEPLDLTPTEFKIL 163 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 96/165 (58%), Gaps = 5/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+ +D+ + +K F+ EGY+V A +G E ++++ ++VI+D+ +P +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +++R +++V ++ LT + +++D+ILGLE+GADDY++KPFNPREL R + +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR---- 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E +G L R++ +GE +L SE+ + Sbjct: 119 ASQEREDDPTADIDLSGVLLRRKDRTVYL-EGELVELTTSEYTLL 162 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 8/169 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R + E GY+V EA G + +L+E+ +LV++D+ LPG + Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GLLLARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + +RE ++ LT + + DKI+GLE+GADDY+ KPFNP EL R + +L R Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 Y + LD + L+ + ++ +L +E+ + Sbjct: 124 RDRYEA------GRTGYTYGSLHLDTAANKLL-KNNQEVELTPTEYSLL 165 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 96/169 (56%), Gaps = 2/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQ-ILSEYDINLVIMDINLPGK 60 + IL+V+D+ + L + EG++V G + +L + + V++DI +PG Sbjct: 4 EKYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGM 63 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + R +R + V ++ LTGR +++D+I+GLE+GADDY+ KP NPREL+ R + ++ R Sbjct: 64 SGLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T N +++ +G ELD +R+ + + L +EF A+ Sbjct: 124 TENSLGNGAAGKTIVHALLHGIELDTGTRTAV-VNNTTLPLTSAEFNAL 171 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 14/180 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VEDE + EGY+V T G E E D +L+I+D+ LPG +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 LLLARELREQA--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS- 119 L + R++R + ++ ++ LT + +E++KI+GLE+GADDY+TKPF+PREL R + L Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 120 RTMNLGTVSEERRSVESY----------KFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + S + + K + + ++ +L EF + Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAY-IENQELQLTPKEFELL 179 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 7/166 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED+ L+ + EG+DVF A DG E + +++++D+ LP +G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +RE + V ++ LT +D DK++G + GADDY+TKPF+ EL R + LL RT Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQ-YKLPRSEFRAM 169 ++F ++ ++ + G+ +L + EF + Sbjct: 124 VVHK------GIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELL 163 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+++VEDE+ + ++ EA G++V DG E ++ + NL+I+D+ +P +G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++REQ+++ ++ +T R E+D++LGL +GADDY+ KPF+P+EL R + +L R Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +D + + + L +EFR + Sbjct: 121 RKAEPEQNDL---------FRIDKAQQRIWYKQ-KSLNLTPTEFRLL 157 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 209 bits (533), Expect = 4e-53, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + ILI++DE + +K +G+ V AT+G+ ++ + ++ +L+I+D+ LP Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL L + LR+ ++FL+ + ++DKILGL +G DDYITKPF+P EL R L R Sbjct: 61 NGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L T + G +D + +L D + L EF + Sbjct: 121 NRIL-TNQTNSADLSILNIAGLTIDFANYTLY-VDDKPVVLTVKEFEIL 167 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 I++VEDE ++ EG+ V DGA + L+ + + +L+++D+ LP +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +R+ ++ LT R E+D++LGLE+GADDY+TKPF+ REL R +L R Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +S +D SR + G+ L EF + Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSR-GQPVHLTAKEFDLL 169 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE RN L+ EGY+V EA DG + ++ E +LVI+D+ LP K+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RE+++ ++ LT RD+ D++ G E+GADDYITKPFN + L R ++LL +T Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N+ + ++ S S+ GE +L E+ ++ Sbjct: 126 NM--------VESIIEIGDLVINDTSHSVSNSKGE-IELAPKEYDLLV 164 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++++EDE + AEG++V A DG + ++E ++V++D+ LPG +GL Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R ++ V ++ LT RD+E D ++GL +GADDY+TKPF+ REL R + LL R Sbjct: 76 VCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRA 135 Query: 125 GTVSE-ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E E+ + +D R ++ G L +EF +L Sbjct: 136 APPPPSESEKQEALQIGDLVIDRAGRRVM-RAGAPAHLTPTEFDLLL 181 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE ++ + EGY A G E + +LV++D+ LPG Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + R +R A + ++ LT + E D + GLEIGA+DYI+KPF+PREL R R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R + + + + +D+ ++ D L SEF+ + Sbjct: 121 LRRRTRVEKPATQATVIA----GPLSMDVGRHRVV-VDKNALDLTHSEFQVL 167 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK-LPRSEFRAM 169 G + +E+ F ++ +R ++ +GE + L EF + Sbjct: 122 GKAVIDEDMIETECF---TINKKTREVLL-NGEPVENLTPKEFDLL 163 >UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY83_EIKCO Length = 226 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHILI+EDE ++ + A + Q+L+ +L+++D+ LP +G Sbjct: 2 NPHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR Q ++ LT +D E D+ILGLE+GADDYI KPF+PREL R + +L RT Sbjct: 62 FELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQ 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E V W D+ + I G + L + E+R + Sbjct: 122 TRPAAKTESVPV-------WHDDVPA-CCIRHQGRELPLTQGEYRLL 160 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+VED+ + A G+ V A DG + +L+++D LPG +G Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R + +V ++ LT + ++I GLE GADDYI+KPF+PREL +R +++L R++ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG- 159 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ + LD ++ S++ GE+ L EF + Sbjct: 160 -----DLTPEATFTLGEFTLDASAHSIV-RAGEELALTAREFDLL 198 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 208 bits (531), Expect = 5e-53, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 3/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL+VED + L GY V+ A DG + ++ +LVI+D LP + Sbjct: 4 HVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R +R+ + ++ LT R E D ++GLE+GADDY+TKPF REL R R LL R Sbjct: 64 GLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRD 123 Query: 122 MNLGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ + + E ++ LD + + ++ L +EF + Sbjct: 124 QRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQ-QELDLTPTEFAIL 172 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 208 bits (531), Expect = 5e-53, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP + Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + G + E E+ ++ ++ +GE L R+EFR + Sbjct: 137 RSAGGPAG-----EVIDIQDLEIRPDA-GVVRRNGEALHLTRTEFRLLC 179 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ DG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R + Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +D+ R ++ +GE LP EF + Sbjct: 124 DA---GADDGVLEAGPVRMDVE-RHVVSVNGEPITLPLKEFDLL 163 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++ +L+V+DE ++ E EG V AT+G E + + E ++V++D+ +P Sbjct: 4 LKDKLVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVM 63 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G R +R + V ++ LT +D E D++ GLE+GADDY+ KPF+ REL R R +L R Sbjct: 64 DGFEALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + V+ + +D R ++ DG++ L +E+R + Sbjct: 124 HYTQPPIPQTLVKVD----DRLSIDFARREVL-VDGKRVNLRPTEYRLL 167 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 6/168 (3%) Query: 8 IVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLAR 67 +VEDE + + AEGY V A DG ++ ++V++D+ LPG +GL + R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 68 ELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT- 126 ++ V ++ LT RD+E DK++GL +GADDY+TKPF+ REL R L+ R Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 127 VSEERRSVESYKF----NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V S E+ +F E+D R + G + L +EF ++ Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRR-VRRAGTEVHLTPTEFDLLV 188 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 208 bits (530), Expect = 7e-53, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 10/170 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + ILI+ED+ V LK FE EGY V A DG ++ L+++D+ LP Sbjct: 2 IHAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKV 61 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + R LRE+ + ++ LT + E D +LGL++GADDY+TKPF+ +EL R L Sbjct: 62 NGYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + +++ Y F D +R+L+ +G+ L EF + Sbjct: 122 R--------QRKQTGTVYTFGDCRFDTTARTLV-RNGQDVPLSPKEFDLL 162 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 208 bits (530), Expect = 7e-53, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+VEDE L + G+ G + + + +L+++DI LPGKNGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R + V + +T E+D++LGLE+GADDYI KPF+PRE+ R + L R + Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G R G+++D ++ I ++ L +E+R + Sbjct: 127 GVPEPTRT--------GFQID-EAQQRISFKNQRLDLTPTEYRLL 162 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 208 bits (530), Expect = 9e-53, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 1/170 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ +N K+ EG+ + A GAE Q+ + +L+I+D+ LP Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R +R + V ++FL+GR++++D+I+G IG DDYITKPF+P L + ++ + R Sbjct: 61 DGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + + + F +D + + +G+ L EF+ + Sbjct: 121 YKELSGSPKAASNGRALIFGELAIDRDCCEVT-REGKPISLAAKEFQLLC 169 >UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DA69_LARHH Length = 233 Score = 207 bits (529), Expect = 9e-53, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R+ L + + G+ V DG +L+ ++L+++D+N+PG +GL Sbjct: 3 HILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLE 62 Query: 65 LARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R+LRE+A V ++FL+ E DK+ GL G DDY+ KPF+ EL R L R Sbjct: 63 VCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNR 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + + ++D+++ + G+ L EFR + Sbjct: 123 FAPAAAVPDNPQCLRAGVLQVDLDTCR-VRVAGQPVTLTEREFRLL 167 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 207 bits (529), Expect = 9e-53, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE R+ L+ E EG+ V EA DG + +LV++D+ +P G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +++ ++ LT + + DKILGLE+GADDY+TKPFN REL R R +L RT Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQTP 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + LD R+ + G L SEF + Sbjct: 124 L------EPDVLRAADIVLDRTGRT-VRVGGRYVDLTPSEFAIL 160 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 73/175 (41%), Positives = 114/175 (65%), Gaps = 11/175 (6%) Query: 1 MQTP-----HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 MQ P +L+V+D+LV + + + F EGY V A DG + L++ +++LV++DI Sbjct: 1 MQAPLESHVTLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDI 60 Query: 56 NLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 NLPG++GL LARELR + A++ ++ +T R+++VDKI+GLE+GADDY+TKPFNPREL R Sbjct: 61 NLPGQDGLSLARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARV 120 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++LL R+ + + +S +F GW L+++ R L G+ L R EF + Sbjct: 121 KSLLRRS-----ATRPAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVL 170 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 8/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ T L+ AEG+ V +A+DG E + +LVI+D+ +P +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R + V ++ LT R + VDK++G +GADDY+TKPF+ EL +R +L R L Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +F E++ ++R++ D +L EF + Sbjct: 126 P-------ESRTLRFGHLEINKSTRTVHVGDRNP-ELTPREFDLL 162 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 98/174 (56%), Gaps = 5/174 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLP 58 M+ IL+V+D+ + ++ +EGY+V +A D IL E DI+L I+DI +P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G +GL + +++RE +++ ++ L+ + ++DKI+GL GADDY+TKPFNP ELT R + L Sbjct: 81 GMDGLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANL 140 Query: 119 SRTM--NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R N G + E + ++ ++R + D ++ KL E+ + Sbjct: 141 RRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYD-KEAKLTPIEYDILC 193 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIVEDE LK EGY V G E+ + +++++++DI LP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + RE+R+ ++V ++ +T + EVD+I+G E+G DDYI KPF+PRE+ R +L R Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 T ++ S + +L+ SR + +G + L SEF Sbjct: 121 TF-------KKSSDDVLALGPVQLNKTSR-IAEINGNELSLTPSEFDI 160 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 6/172 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+DE L+ + +DV AT+GA+ ++ ++V++D+ LP +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +R ++ + ++ LT +D E DK+ GLE+GADDY+ KPF+PRE+ R +L R Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 122 MNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++ +S + + +D + + + KL EF M Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYK-VSVNDQNLKLTPKEFELM 171 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+D R + + EG++V EA +GA+ ++ + D +L+I+DI +PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R++RE +N ++FL+ R E DK LG G DDY+ KPF+ EL R++ L+ R Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 121 TMNLGTVSEERRS------------------------VESYKFNGWELDINSRSLIGPDG 156 +E F+ E++ R + +G Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVRE-VHKNG 179 Query: 157 EQYKLPRSEFRAM 169 + L +E+ + Sbjct: 180 QLLDLTETEYSML 192 >UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein TorR n=1 Tax=Rhodospirillum centenum SW RepID=B6ITF9_RHOCS Length = 241 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P +LIVEDE TR L + F G+ + EA +G + + L +LV++DI LP ++ Sbjct: 6 DAPLVLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPDED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G +AR +RE +NV ++ +T R NE D++ GLE G DDY+TKP NPREL RARNLL RT Sbjct: 66 GFSIARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLRRT 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R +F GW +D+ R LI P+G++ ++ R EF + Sbjct: 126 H---PSKMRRAEGTVRRFGGWTMDLARRRLIDPEGQEIRVTRGEFELL 170 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 207 bits (528), Expect = 1e-52, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 3/171 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q PHIL+V+D R+ + E G A++ EM L +L+I+D+ +PG++ Sbjct: 6 QLPHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL AR L ++ L+ E D+++GLEIGADDY+ KPF+PREL R + +L R+ Sbjct: 66 GLSAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRS 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGP-DG-EQYKLPRSEFRAML 170 ++ F GW LD ++R L+ DG + L +EF+ ++ Sbjct: 126 ERREPLAGTL-GGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLV 175 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L RT S + G LD S + DG+ ++ +E+R + Sbjct: 121 LRRTG-------PGDSEAPIEVGGLLLDPISHRVT-IDGKPAEMGPTEYRLL 164 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+L + L+ + +V DG + D +L+++D+++P NG+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RELR+ N ++ +T + E+DK+LGLEIGADDYITKPF+ REL RA+ ++ R+ Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + ++ E F ++++ R + +G++ L EF ++ Sbjct: 129 NQQTNDSKTAE-LDFGDLKVNVEMRRVTL-EGKKIDLSPKEFDLLI 172 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 7/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP Sbjct: 1 MKT--ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKL 58 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + +++RE + +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + Sbjct: 59 DGIAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIER 118 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG-EQYKLPRSEFRAML 170 RT ++ E+ +D +I G + L EF ++ Sbjct: 119 RTTQ-PIEQPVEQASETIVVGDLSVDET--EVIAKKGDHKLHLTPKEFELLV 167 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEM-HQILSEYDINLVIMDINLPGK 60 P IL+V+D+ + L +G+DV GAEM + ++ ++L+++DI LPG+ Sbjct: 13 NAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGE 72 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 73 DGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRR 132 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + + +D +R DG L E++ + Sbjct: 133 QRM--EPDARGKQDERIRVGDFAIDPQTRQAFLSDGA-LDLTHGEWQLL 178 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILI +D T+ + + + A DG E + + +LVI+D+ +P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +E+R+ +NV ++ LT + E+D+I+GLEIGADDYI KPF+PRE+ R + + R N Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R + FN + +D++ I + E+ + E + + Sbjct: 125 ANIDTNLNRKL--VTFNNFNIDLDKYE-IRLNKEKIDVTPKECQIL 167 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 7/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG ++DI LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L RT+ + Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E R+V LD R++ GE +L +EF + Sbjct: 131 PEGVERVRTV-----GPVTLDPTRRTVT-VSGEPIQLTYTEFDLL 169 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 5/173 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+V+DE ++ G+++ +G + +I + +L+++D+ LP Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL + R +R ++ LT + E DK++GL +GADDYITKPF REL R R + Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120 Query: 118 LSRTMNLGTVSEE-RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R M+ + + E + +D+N R ++ E + SEF+ + Sbjct: 121 LRRVMDSKSTTAETATDTNIIQVQDITIDVN-RHIVKKQDEIIEFTLSEFKIL 172 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 4/172 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILIVEDE + R L+ FE E Y+V A DG E + +L+++D+ LP K Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +R++ ++ LT + E K+ GL++GADDY+TKPF+ EL R + L Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 120 RT--MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R +++ SV++ F LD + + G +L EF+ + Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDF-KKFIATKGGVPLELSTREFQIL 171 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 4/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HI +VED+ +N + + + EGY + + ++ ++ I+DI LPG +G Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +++R +++V ++ ++ +D E+DKILGLE+G DDY+TKPF+PREL R + L R+ Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ + K + + N R + +GE+++ E+ +L Sbjct: 122 ---SHRQDEIEEDRVKVDQLLVYKNERRVFF-EGEEFETTTKEYDMLL 165 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 7/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E K+ +++ +R ++ +GE +L E+ + Sbjct: 122 -----GRGEEEILKYGKVAVNLKTREVL-KNGEPVELTSKEYALL 160 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 3/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++DEL R+ + + + EG+ V A +G L+ + +LV++D+ LP +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E+ +Q+N+ ++ ++ +D +DK+LGLE+GA+DYITKPF+ REL R + +L R Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E E++ ++ ++ +G Q L E+ + Sbjct: 121 HNDEAKYE--YTTKLVCGELEINPDT-KVVQKNGTQILLTAKEYGIL 164 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 4/166 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + S G+D +A G + + ++V++D+ LP +GL Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R ++ ++ LT R +E DKI GL +GADDYITKPF+ REL R +L R Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR---P 158 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T + + LD + + +L R+EF ++ Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQ-VRVGETTVELTRTEFELLV 203 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI +DE L E +G+ ++ A +G E QI++ ++++ I+DI +P +G Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R++RE ++ ++ L+ + DKILGL++GADDYITKPFN E+ R + L R N Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRY-NK 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +E+ + + L+IN+ +L + + L +E++ + Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLY-KENIEVYLTSTEYKILF 166 >UniRef50_A7HP70 Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP70_PARL1 Length = 257 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 3/172 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +L+V+D+ R +++ A G + EA D A ++ S +LVI+D+ L N Sbjct: 17 HAASLLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMFSGGKFDLVILDLLLGADN 76 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + RE+R+ + + +TG+ DK++GLE+GADDY+ KP N REL R R LL RT Sbjct: 77 GFDVLREIRQTHSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRRT 136 Query: 122 MNLGTVSEERRSVESYK---FNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N G + + W+ D + R L PDG L +E ++ Sbjct: 137 ANSGGSGARTNAGAADSDEAAAQWKFDPHRRRLCAPDGALVPLTTAECDLLI 188 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 206 bits (525), Expect = 3e-52, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ L+ + + EGY+V A++G + E +++++D+NLP NG Sbjct: 8 KILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQ 67 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R + ++ +M L+ RDN DK++ LE GADDY+TKPF EL R + +L R+ Sbjct: 68 ICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKN 127 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T S+E + + F+ +D SR + D E+ L E+ +L Sbjct: 128 NT-SQEAGTGDVLIFHHMTIDKASRQVFIKD-EKVALTPKEYEILL 171 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 205 bits (524), Expect = 3e-52, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 91/163 (55%), Gaps = 8/163 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I I++D+ R+ + E EGY+V + ++ + ++ +++I+DI +PG +G L Sbjct: 5 IYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGYEL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ ++V ++ ++ RD ++DKILGLE+G+DDYI KPF+PREL R +++ R Sbjct: 65 CKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKMPK 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 +E + + + R ++ +GE+ EF Sbjct: 125 RSNE-------IRIKDIVIVPDERKVL-YNGEEMSFTSMEFEL 159 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 205 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 16/175 (9%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE---------YDINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R LL R+ N + + ++ G +L ++ D + L EFR + Sbjct: 145 RALLRRSQN-----QPAETPAVLRYEGLKLFPEECRVLL-DDRELTLSPKEFRLL 193 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 205 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 10/174 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +I++ +DE + + E EG++V+ A +G E ++ E+ +L+++D+ +P +GL Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R+ + ++ LT R E D++LGL +GADDY+TKPF+PREL +R N+L R Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 125 GTVSEERRSVESYK---------FNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S R E G + R + +L EF + Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERR-VSVLESDVELTVKEFDLL 176 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 205 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 3/166 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E+++ E + LD+ S L +G+Q ++ EF+ + Sbjct: 132 FS--KGEKQNHEIIQIGDVMLDLVSCKLY-KNGQQKEVTSYEFKIL 174 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 205 bits (523), Expect = 4e-52, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 7/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P ILIV+DE ++ E EG+ ++ A + + + +L I+D+ LP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G L +++R Q+N+ ++FL+ + EVDK+LGL IG DDYITKPF+P+E+ R + L Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + E +V ++ N + + +GE+ +L E + Sbjct: 121 RVSMMEAPVAETTTVGPFQMN------EDETEVYVNGERLELTAKEVGLL 164 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI+EDE + L EG++ A G++ + L + +L+++D LP + Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++ Q N+ ++ LT R + DKILGLE+GADDYITKPF+ RE+ +R R +L R Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +E + F + R L+ GE L EF +L Sbjct: 121 LAQAQAPVKEA-APSVIGFRDIVVSRAER-LVTKKGEAVDLTPKEFDLLL 168 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 1/168 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+L K E ++V TDG + E +L+I+D+ LP +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + + +V ++ ++ + E+DKI GL +GADDYITKPF+P EL R ++ + Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L ++ + G E++ +SR +I D ++ L + EF +L Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIIND-KEVNLAQKEFDLLL 167 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 +Q P +L+V+D+ R + A GY V A + AEM ++++ +L+++D+ +PG+ Sbjct: 6 LQPPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGE 65 Query: 61 NGLLLARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL AR L + ++ L+ N+ D+I+GLE+GADDY+ KP NP EL R R LL Sbjct: 66 DGLSAARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLR 125 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ + S++R +V Y+F GW LD+ R L P G L EF + Sbjct: 126 RSQSSNEQSDQRGNV--YEFAGWRLDVVRRDLRDPTGIFINLSDGEFALL 173 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+ + K E+ G V +G++ + + +LV++D+ LPG++GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R N ++ LT R +++D++LGLE+GADDY+ KP PR L R R LL R Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 125 GTVSEERRSVES-------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E E FN +D + R D + L +EF + Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLED-QSIDLTSAEFDLL 197 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP ILIVED+ + G DV TDG + + +LV++D+ LPG + Sbjct: 8 QTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSD 67 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + ++ LT R ++D++LGLE+GADDY+ KP PR L R R LL R+ Sbjct: 68 GLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS 127 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N + +R +F +D RS+ +GE +E+ + Sbjct: 128 ENAPSEEIPQR----LEFGELVIDNGGRSVTL-NGELVDFTSAEYDLL 170 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 205 bits (523), Expect = 5e-52, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG-KNGL 63 H+L+VED+ + L F E +V ++G + + LVI+D+NLPG +GL Sbjct: 4 HVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDA-SVTLVILDLNLPGRLDGL 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +AR +R ++ V ++ L+ RDNE+D++ GLE+GADDY+TKPF+PREL R R + R Sbjct: 63 EVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR--- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V S + FNG + D +R ++ DG L EF + Sbjct: 120 ---VEANPSSAAALSFNGVDWDPRARQVL-RDGVPVALTNREFDLL 161 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 5/171 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+ +D R L+ + EGY+V EA DG E+ Q+ I+L+++DI +P Sbjct: 1 MQT-RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +LRE +NV ++FLT + + DK LG GADDY+ KPF+ ELT R + LL R Sbjct: 59 NGYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 Query: 121 TMNLGTVSEER--RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 EE + + +G L ++ +G++ +L EF + Sbjct: 119 YQVYKGKKEETLLDTEKDLSMDGLTLRYAQQNA-EVNGKEVELTDIEFNIL 168 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI++D+ L G+ V A + + L +LVI+D+ LP + Sbjct: 14 DPTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTD 73 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + + ++ LT R + D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 74 GLAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR- 132 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E+ + E++ +RS+ + +L +EF + Sbjct: 133 -------GTRDDAEALRLGALEVNWTTRSVRLAQ-RELELTTAEFELL 172 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 95/169 (56%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + E EGY V A DG + Q+ + ++VIMDI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +++++ + +V ++ L+ +D+ VDKI+G ++G DDY TKPF+P EL +R + +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E++ + + + ++ ++R L+ G++ L EF + Sbjct: 121 SKAV----PEKKGKDVLDYQNFYIEYSTR-LVRIWGKEVTLTAKEFDML 164 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ TDG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R G Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR----G 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S + +D+ R ++ +G+ LP EF + Sbjct: 120 GDDDSEMSDGVLESGPVRMDVE-RHVVSVNGDTITLPLKEFDLL 162 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + P +L+V+DE + ++ G+DV A G E + +L+I+D+ LP + Sbjct: 19 RAPRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDAD 78 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + R LR VA+++LT RD DKI GL G DDYITKPF EL R R +L R Sbjct: 79 GFEVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T E + + ELD ++ L+ + +L +EF + Sbjct: 139 TRR--PAPEPSPAPGLLTYADVELDPDAH-LVRRADQPVELSPTEFSLL 184 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 205 bits (522), Expect = 7e-52, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+I +VED+ + S + + V G + +LVI+D+ LPG +G Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L L R LR+++ ++ LT RD+ D++LGLE+GADDY+TKP PR L R R LL R+ Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +V+E R + G +D+ R++ GE+ +L E+ ++ Sbjct: 167 ----SVNEPRLDNDLILIGGLRIDLAERTVSWR-GEEVELSSGEYNLLV 210 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 205 bits (522), Expect = 7e-52, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I++V+DE R L + G++V A G+E +++ + NL++MD+ LP +G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 66 ARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R +R+ V ++FLT RD+ DKI+GL +G DDY+TKPF+ E+ R R +L RT Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ-- 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E K E++ +S + G +L +E++ + Sbjct: 127 ----EPDEETHIIKVADLEINEDSHDVTRC-GVPIELSPTEYKLL 166 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 205 bits (522), Expect = 7e-52, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 11/172 (6%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L RT ++G E + G LD S + D ++ +E+R + Sbjct: 121 LRRTDSMGI-------SEPIQVEGLCLDPISHRVTISD-MPVQMGPTEYRLL 164 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 205 bits (522), Expect = 7e-52, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 11/168 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE R + + E G+ EA D L+E +L+++D LPG +G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 65 LARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L+ ++ ++ ++ LT R E D++ GLE GADDYITKPF+P+EL R + ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + G LD S ++ + E ++ +EF+ + Sbjct: 124 SPMAV-------EEVIEMQGLSLDPTSHRVMAGE-EPLEMGPTEFKLL 163 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 204 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+ ED+ N++ E EG+ V A DG E ++ +L+IMD+ +P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G ++LR+ + V ++ L+ + + DK++GL IGADDYITKPFNP EL R + L R Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ S E + +L+ ++ D + L E++ + Sbjct: 121 YHSYDNLA----SSEIIQIGNIKLNTFEKTC-SVDDKIINLTSLEYKIL 164 >UniRef50_A4XLT7 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridia RepID=A4XLT7_CALS8 Length = 234 Score = 204 bits (521), Expect = 8e-52, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +V+DE + + + GY+V D + + E + ++VI+DI LP Sbjct: 1 MSRYLVYVVDDEKDILDIIYQYLISRGYEVKTFEDASSFLKEFEENEPDIVILDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +++R+ +NV ++ L+ + E DK+LGLE+G+DDYI+KPF+ EL R + +L R Sbjct: 61 DGYELCKKIRKSSNVPIIMLSAKGEEFDKVLGLELGSDDYISKPFSLLELEARIKKILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR--AML 170 + + + +F G ++D+N +S+ + + L EF +L Sbjct: 121 VGK-----DTLKVDNALEFFGIKVDLNQKSVF-YNNVKVDLSPKEFETFLLL 166 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 204 bits (521), Expect = 9e-52, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMH-QILSEYDINLVIMDINLPGKNGL 63 ILIV+D+ L + EGY+ +A G E ++++ DI L+I+DI +P +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +E+R+ + + ++ ++ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T SE + + + +S + G+Q +L EF + Sbjct: 122 EVTNSEP----DVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL 163 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 7/164 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + +K FE +GY V A++G E + + DI+++++DI +P +G Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEY-CDKDIDIILLDIMMPNIDGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R++ + ++FL+ R +E+DKI GL +G DDYI KPF+ +EL R + L R + Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRI 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + F LDINSR + + E+ EF Sbjct: 123 PLNNRSK-----ISFGKLTLDINSRK-VHYEEEEILFTAKEFDI 160 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE + GY V A G++ ++ +L+++D+ LPG +G Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 65 LARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +LR VA++ LT R E D+I GL +GADDY+TKPF+P EL +R +L RT Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + VS + + +D + + + DG+ +L +EF+ +L Sbjct: 130 GSATPVSAD-----TLVIGPLHIDRAAMT-VRVDGQDVELTPTEFKLLL 172 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ++LIVEDE N +K +D G E L E + VI+D++LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R++RE +NVA++ L+ R ++ DK+LGL GADDY+TKPF+ EL R L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + + + ++ L D + L EF + Sbjct: 121 QDRW--LQDHDVQKDVLHIDNIIINKQEY-LFLRDNKPIPLSAKEFELLF 167 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L + I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 TM-NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E + + + +L+ ++ DG + ++ E++ + Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVA-DGNKVEVSDLEYKIL 173 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 3/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED++ N ++S E Y V ++ G E + + +L+I+DI LP +G Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R +NV ++ L+ + EVDK+ GL++GADDYITKPF+ EL R N + R Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +++ S+ YK NG + + ++ D ++ +L EF ++ Sbjct: 124 NKKTDD-NSIWRYK-NGLTIIKDEMKVL-IDDKEIELTSKEFSLLV 166 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED++ + Y+V G + +LVI+D+NLPGK+G Sbjct: 31 RILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRPDLVILDVNLPGKDGFE 90 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R+ R+ + ++ +T RD D++LGLEIGADDY+ KP PR L R + L R Sbjct: 91 ICRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRA--P 148 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V+E E Y F + +D RS++ PDG L +EF + Sbjct: 149 ARVAEGAPQPERYTFGKFSIDRTDRSVVLPDGSTPDLTSAEFDLL 193 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG + ++DI LPG G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L R Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G LD + R++ G+ +L +EF + Sbjct: 131 PPGRPRI-------VGGVTLDPDRRTVTAA-GDPVQLTSTEFDLL 167 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LIV+DE ++ EAEGY V A DG + L ++ V++D+ +PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE +V ++FLT R + DKI GL +GADD+I K P E+ R + +L Sbjct: 61 PSGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E F +D+ + + DG+ +L EF + Sbjct: 121 RYRR-----GEPAPRAVLDFGRLVIDVQAHE-VRVDGKPVQLTAREFELL 164 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 96/169 (56%), Gaps = 10/169 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 R +N+ V ++ +G D + +L+ DG L +EF Sbjct: 122 RNVNILP------KVAHWQRDGLAADFEAYTLL-VDGVDAHLTPTEFNL 163 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 16/182 (8%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VEDE +TLK E ++V A +G +I E++ +LV++DI LP Sbjct: 1 MLKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + + +++ ++ LT RD+ +DKILG+EIGADDYITKPF RE+T R + R Sbjct: 61 SGFELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRR 118 Query: 121 TMNLGTVSEERRSVESYKFNG-------------WELDINSRSLIGPDGEQYKLPRSEFR 167 +E + N + ++ ++R++I DG++ L R EF Sbjct: 119 VSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVI-KDGKEIMLKRKEFD 177 Query: 168 AM 169 + Sbjct: 178 LL 179 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 4/167 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 I +V+DE+ +KS E GY V+ A +G + + ++ + +L+I+D+ LP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR+++ V ++ LTG+ +E D + GL+IGADDY+TKPF+PR+L R + LL RT + Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+ S+ S N ++ + + G L E+ ++ Sbjct: 130 ---ELGEKNSLFSLNDNDLIINDLNYE-VKKAGNIVNLTPIEYNILI 172 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 203 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 7/171 (4%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M P +++V+D+ R+ + GY V A + +L +++I+D +PG Sbjct: 1 MNAPARVIVVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL + R L+ +A + ++ L+ + D+++GLE+GADDY+ KPF+PREL R R LL Sbjct: 61 EDGLSVCRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R L T + +F GW L R LI PDG + L R EF +L Sbjct: 120 RQDKLRT-----QVASEMRFAGWRLLPEQRRLIAPDGAELVLSRGEFSLLL 165 >UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7R2_9BURK Length = 239 Score = 203 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 88/170 (51%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIVED+ L + +GY A +L+ D++LV++D+ LPGK Sbjct: 1 MTGNSILIVEDDADISVPLAAFLSGKGYVTQVADSVEAADALLATNDVDLVLLDVMLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R L + ++ LT D+ DK++GLE+GADDY+ KPF+PREL R R +L R Sbjct: 61 DGLDLCRRLHAKGGPRIIMLTALDDPTDKVVGLELGADDYVPKPFDPRELLARIRAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + + +F+G+ R + P G + L +E +L Sbjct: 121 PVASEGEVAKPVTELVLQFSGFTFYPYRRFVRSPAGLRVPLTGAETDLLL 170 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 203 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 4/170 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 ++T IL+V+DE + L + E + + A +GAE ++ + +++++D+ LP Sbjct: 14 VRTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPD 73 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G L R++R N ++F+T R +++DK+ GL IG DDYITKPFNP E+ R L Sbjct: 74 IDGFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + + F + L S LI + E E + Sbjct: 134 RQHMTQEPNNGEK--LNLHFRSFSL-YPSEGLITVNNEPVHCTAKELELL 180 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 1 MQTP---HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL 57 M P I++V+DE R L + G++V A G+E +++ + +L+++D+ L Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65 Query: 58 PGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 P +G + R +R++ +++LT RD+ DK++GL +G DDY+TKPF+ E+ R R Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L RT E+ + E++ +S + G+ L +E++ + Sbjct: 126 ILRRTQ------EQVEDDPIIRVGDLEINEDSHD-VSRAGQPIDLSPTEYKLL 171 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LI+EDE LK+ E EGY V+ + DG ++ + + ++V++D+ LP +G + Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 AR++R++ ++ LT + +E +KI GL IGADDY+ KP +PRE+ R + +L R Sbjct: 70 ARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK-- 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E +D ++ + G + L ++EF + Sbjct: 128 --EPGRIQQEIITAGEITIDTLAKKIYLR-GTEISLTQTEFDIL 168 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+L+VEDE L+ E EGY V A DG + E +LV++D LP +G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + R LR E ANV ++ LT R E D++ GL+ GADDY+ KPF+ EL R R +L Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + + +D + + D + L +EFR + Sbjct: 122 RIR-------PGLAEDVIEAGDITMDRVAHRVKRAD-REIHLGPTEFRLL 163 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 203 bits (517), Expect = 2e-51, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+VED+ ++ + AE + V A DG + ++ NL+I+D+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR + ++ LT ++ E DK+LGL++GADDY+TKPF PRE R LL RT + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + F + S + L EF +L Sbjct: 129 YNQPDD------TLYFCTLTIYPQSYQAFIEQ-KTVDLTPKEFELLL 168 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 203 bits (517), Expect = 2e-51, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IL+V+DE + E Y V +G + +I+ + ++ VIMD+ LP +G Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R+ + ++ LT + ++VDKILGLE+GADDYITKPF+P+EL R + +L RT Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++E + + +D R ++ + E+ +L +EF+ + Sbjct: 122 DRAINLAEIDP---TLQAENIAIDF-KRMVVKKNNEKIQLTPNEFKLL 165 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI+EDE + + E GY+ G + +++V++D+ LPG +G+ Sbjct: 3 KVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R+ + V ++ +T + E+D+++GLE+GADDY+ KPF+PRE+ R + L R Sbjct: 63 ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRV--- 119 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E ES + +G++LD++ G+ L EF+ + Sbjct: 120 -----ELDQAESPRTDGFDLDVDRLRATYK-GDLIDLTTVEFQLL 158 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+++D+ L EG+ V DG + ++ + +L+++D+ LP ++G Sbjct: 3 KILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFD 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + LR+ + ++ LT + + VD+++GLEIGADDY+ KP +PREL R R +L R Sbjct: 63 VLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRA--- 119 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +VE L + +R+ D + L +EF + Sbjct: 120 SIAEANQPNVERLTSGKLSLHLGTRTATW-DNQDVVLTGTEFSVL 163 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 9/167 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHILIVEDE +TL + EG+ + G + +L+I+DI LP +G Sbjct: 4 MPHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDISG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 ++LR + V +MFL+ RD E+D+++GLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 64 FETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRM- 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + V+ E + + +D R I G+ L R EFR + Sbjct: 123 -VPRVAPEAVAAL------FVIDPE-RVQISYRGQPLSLTRHEFRLL 161 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 202 bits (516), Expect = 3e-51, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 3/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG +G Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 65 LARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL RT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ +G +LD R D Q L EF + Sbjct: 123 ASRLRQQIGDAAPTS-SGLQLDNARRRATFRD-VQLTLRPKEFDLL 166 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 202 bits (516), Expect = 3e-51, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 7/175 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+L VED+ V R + E +G+ V DG + ++ ++D+ +PG + Sbjct: 3 EQTHVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ L R +R+++ V ++ L+ R + +D +LGLE GADDY+TKPF+ L R R +L R Sbjct: 63 GVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRF 122 Query: 122 MNLGTVSEERRSVES------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + S F E+D + G+ L +E R +L Sbjct: 123 GHASGPNSRPAEDSSAPDGGVLTFGELEIDTEGME-VRRSGQPVALTPTEMRLLL 176 >UniRef50_Q11E93 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=Q11E93_MESSB Length = 268 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 1/166 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +LIV+D+ R + G+ V A DG EM LS+ I+L+I+D+NLPG++GL Sbjct: 32 KRLLIVDDDDDIRTLVAEQLAEAGFRVELAADGVEMFDHLSKKSIDLIILDVNLPGEDGL 91 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R +++N+ ++ LT R +D+++GLE+GADDY+ KPF PREL R R +L R Sbjct: 92 SLCRRHGQKSNIPVIMLTARGALIDRVIGLEVGADDYLAKPFEPRELLARIRCVLRRA-G 150 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R + +F GW LD +R L+ G L +EF + Sbjct: 151 AAVEPVDARRAKRARFRGWTLDFENRCLVDRAGRVVVLSGNEFSLL 196 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI++DE + LK E +G V A +G E + E +L+++DI +P +G Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R+ ++FL+ + +E+D+I G +G DDY+ KPF+ +EL R L R Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++EE + F +D+ SR ++ G L + EF + Sbjct: 122 ILLNEEGKRA-LLNFKNITIDLKSREVM-VKGNPIGLTKKEFDVL 164 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + + EG++V G ++ +L+++D+ L +G Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 65 LARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR V +FLT RD DK+ GL +G DDY+TKPF+ EL R R +L R Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRA-- 197 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G+ +F ELD +R + G +L +E+R + Sbjct: 198 -GSPVTGDGHPAPLRFADLELDPRTRE-VRRAGRLVELTATEYRLL 241 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE ++ E GY V +G E+ L + +LVI+D+ LPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L ++++E+ ++ ++ +T + E + +LGLE+GADDY+ KPF+ REL R R++L RT Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L++ + + + L E++ + Sbjct: 131 EEEEQFEGN---ITIGNIFLNLKAHKAF-INNFEVDLTLIEYKIL 171 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 6/167 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ EDE R+ + + GY+V EA +G E + +++++DI +P +G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 65 LARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + + R + V ++ LT R E DK++GL +GADDYI KPF+P EL R ++LL R Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + R V + +D+ ++ + G ++ +E+ + Sbjct: 123 LRRRKQPRELVS----GPFRIDLGAKR-VQKAGVDVEVTPTEYDLLC 164 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 6/169 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VED+L L EGY+V +A DG + +LV++D+ LP N Sbjct: 4 KTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELN 63 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +ELR++ + ++ L+ + E DKI+GL +GADDY+ KPF +EL R + +L R Sbjct: 64 GFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 F +D+ +R+ + +L EF+ + Sbjct: 124 RYPSAGAGSPP----PVTFGDVSVDMAART-VARARTPVELTAQEFKLL 167 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TP ILIVEDE L A Y + G ++ + + +L+++D+ LPG + Sbjct: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L RE+R +++ ++ +T + E+D++LGLEIGADDYI KP++PRE+ R + +L R Sbjct: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ + +D R G+ L +EFR + Sbjct: 129 KPQRELQQQDAE------SPLIID-EGRFQASWRGKMLDLTPAEFRLL 169 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 202 bits (515), Expect = 4e-51, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 1/169 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+ +DE R L GY+V EA + M + ++ ++V++DIN+PG + Sbjct: 6 EAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL R LR + + ++ L+ VD+I+GLE+GADDY+ KP + REL R + L R Sbjct: 66 GLTALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125 Query: 122 MNLGTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G S +R R + F LD++ L G GE+ + EF + Sbjct: 126 GFAGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLL 174 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L+ EGY+ A +G + L+ I+LVI+D+ +P NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R+ +++ ++ L+ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T + ++ +S + G+ +L EF + Sbjct: 122 QVT----NDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGIL 163 >UniRef50_A9B2W4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B2W4_HERA2 Length = 227 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ R + GY V +A DG + + LVI+D+N+PG +G Sbjct: 2 KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R Q+ V +M LT R++E D I GL+ GADDY+ KPF+PR LT R R LL R Sbjct: 62 VCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVGGE 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ LD + +S+ L EFR + Sbjct: 122 RPTPLQQ--------GDLVLDTDRQSVSREGLGFVALTNREFRLL 158 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS----EYDINLVIMDIN 56 M PHILI+EDE +L + E+E + T + L ++LV+MD+ Sbjct: 1 MSVPHILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVG 60 Query: 57 LPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 LP G ++LR + V ++FLT R +E+D+++GLEIGADDY+ KPF+PREL R + Sbjct: 61 LPDMTGFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKA 120 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L RT +G + + + + +D +++ + L R EF + Sbjct: 121 ILKRTRQVGATLASA-AADVQDASEFVIDTERKTIHYHQ-QLLGLTRLEFSLL 171 >UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=Beggiatoa sp. PS RepID=A7BPZ9_9GAMM Length = 163 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HILIVEDE+ L+ E Y V G ++ + + L+++DI LP Sbjct: 1 MKNQHILIVEDEIKIAQLLRDYLEKSDYTVSCLEQGDKVVPYVKQTIPTLILLDIMLPEM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + RE+R ++V ++ +T + E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 61 DGIAVCREIRTFSSVPIIMITAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPR 163 T E ++ + LD + + + + KL Sbjct: 121 TDPEPLKEEGKK----WVVGTISLDEKTYQ-VNIENQVLKLTP 158 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 202 bits (514), Expect = 6e-51, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 9/172 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TP +L+VEDE L + E +G + A DG E Q + +LV++DI+LP + Sbjct: 18 STPMVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVD 77 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R +R ++V ++ +T ++VDK+L L +GADDY+ KPFNP E+ R R +L RT Sbjct: 78 GVDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRT 137 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRS--LIGPDGEQYK--LPRSEFRAM 169 ++ + E+D+ + S + G+ L +EFR + Sbjct: 138 Q-----AKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLL 184 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 202 bits (514), Expect = 6e-51, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+TP IL+++DE + ++ EGY V + + + + L ++ I+LVI+D+ +PG Sbjct: 8 METPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGV 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +RE+ N+ ++F++ + + DKI GL GADDYI KPFN EL R ++ L R Sbjct: 68 DGIQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S+ + N +D N ++ D + + E+ ++ Sbjct: 128 YQVYSKPIGVDNSI--IQANDLLIDTNK-KMVSVDNRPVAVTKIEYEILV 174 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 201 bits (513), Expect = 6e-51, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T ILIV+DE N L+++ + EG+ ++ T G + + +L+++DI LP + Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + ++R+ V + FL+ ++ ++DKILGL IG DDYITKPF+P+E+ + + R Sbjct: 70 GYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ Y+F +D ++ + G L EF +L Sbjct: 130 QY------KEKNPNMYQFGDITID-EAQGTVLRAGTLLTLTAKEFNILL 171 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 201 bits (513), Expect = 6e-51, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 2/169 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+D+ + GYDV A DG + +IL + VI+D+ +P +G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR+Q+++ ++ LT E D+I+GLE+GADDY+ K F+ REL R R + R Sbjct: 70 FEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 123 -NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ + + + E+ + +R+ G+ L E+ +L Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYL-SGKPLNLTPLEYDLLL 177 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 201 bits (513), Expect = 7e-51, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +I IVED LK E + V + G E+ + +L+++D+ LPG Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L RE+R + V ++ +T + E+D++LGLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 68 DGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E + L + S I G+ K+ +SEF + Sbjct: 128 -------GGEEPHEAAIHIGPLLLKPETHS-ITVAGKDLKVTQSEFSLL 168 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 201 bits (513), Expect = 7e-51, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++ ILIVED+ + EGY DGA + L + LVI+DI LP Sbjct: 2 VEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKV 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +++RE+ N ++ L+ + E DKI+GL +GADDY+ KPF ELT R + L R Sbjct: 62 GGYEVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRR 121 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +N +++R + + E+++++ + D L EF + Sbjct: 122 YLNFSWETDKR--TQIIRHMNIEMNVDTYEVKVGDN-SVTLTAKEFEIL 167 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 244 7e-64 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 243 2e-63 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 241 7e-63 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 241 9e-63 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 240 1e-62 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 239 3e-62 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 238 4e-62 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 238 5e-62 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 238 6e-62 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 237 1e-61 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 237 1e-61 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 236 2e-61 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 236 2e-61 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 235 5e-61 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 235 6e-61 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 234 9e-61 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 234 9e-61 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 233 1e-60 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 233 2e-60 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 233 2e-60 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 233 2e-60 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 232 3e-60 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 232 4e-60 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 231 7e-60 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 231 7e-60 UniRef50_C4L340 Two component transcriptional regulator, winged ... 230 1e-59 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 230 2e-59 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 230 2e-59 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 230 2e-59 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 229 2e-59 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 228 4e-59 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 228 4e-59 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 228 5e-59 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 228 5e-59 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 228 6e-59 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 228 6e-59 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 228 7e-59 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 227 9e-59 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 227 1e-58 UniRef50_B8G223 Two component transcriptional regulator, winged ... 227 1e-58 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 227 1e-58 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 226 2e-58 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 226 2e-58 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 226 2e-58 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 226 2e-58 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 226 2e-58 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 226 2e-58 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 226 2e-58 UniRef50_B8G179 Two component transcriptional regulator, winged ... 226 3e-58 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 226 3e-58 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 225 3e-58 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 225 3e-58 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 225 4e-58 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 225 5e-58 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 225 5e-58 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 225 6e-58 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 225 6e-58 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 225 6e-58 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 225 6e-58 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 225 6e-58 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 224 8e-58 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 224 1e-57 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 224 1e-57 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 224 1e-57 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 223 2e-57 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 223 2e-57 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 223 2e-57 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 223 2e-57 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 223 3e-57 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 222 3e-57 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 222 3e-57 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 222 3e-57 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 222 4e-57 UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heli... 222 4e-57 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 222 4e-57 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 222 4e-57 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 221 5e-57 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 221 5e-57 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 221 5e-57 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 221 5e-57 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 221 5e-57 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 221 6e-57 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 221 7e-57 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 221 8e-57 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 221 9e-57 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 221 9e-57 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 220 1e-56 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 220 1e-56 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 220 1e-56 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 220 1e-56 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 220 1e-56 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 220 2e-56 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 220 2e-56 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 220 2e-56 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 220 2e-56 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 220 2e-56 UniRef50_C7RI96 Two component transcriptional regulator, winged ... 220 2e-56 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 220 2e-56 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 220 2e-56 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 220 2e-56 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 220 2e-56 UniRef50_D1C280 Two component transcriptional regulator, winged ... 219 2e-56 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 219 3e-56 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 219 3e-56 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 219 3e-56 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 219 3e-56 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 219 3e-56 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 219 3e-56 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 218 4e-56 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 218 4e-56 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 218 4e-56 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 218 4e-56 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 218 5e-56 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 218 5e-56 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 218 5e-56 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 218 5e-56 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 218 5e-56 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 218 7e-56 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 218 8e-56 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 218 8e-56 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 217 9e-56 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 217 1e-55 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 217 1e-55 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 217 1e-55 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 217 1e-55 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 216 1e-55 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 216 2e-55 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 216 2e-55 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 216 2e-55 UniRef50_B8I272 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 216 2e-55 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 216 2e-55 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 216 2e-55 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 216 2e-55 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 215 3e-55 UniRef50_D1C683 Two component transcriptional regulator, winged ... 215 4e-55 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 215 4e-55 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 215 4e-55 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 215 5e-55 UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa... 215 5e-55 UniRef50_B6R185 Response regulator in two-component regulatory s... 215 5e-55 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 215 5e-55 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 215 5e-55 UniRef50_A4AL32 Putative two-component system response regulator... 215 5e-55 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 215 5e-55 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 215 5e-55 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 215 5e-55 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 215 6e-55 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 215 6e-55 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 215 6e-55 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 215 7e-55 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 214 8e-55 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 214 8e-55 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 214 8e-55 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 214 9e-55 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 214 9e-55 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 214 1e-54 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 214 1e-54 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 214 1e-54 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 213 1e-54 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 213 1e-54 UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacte... 213 1e-54 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 213 2e-54 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 213 2e-54 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 213 2e-54 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 213 2e-54 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 213 2e-54 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 213 2e-54 UniRef50_C4RGF6 Two-component system response regulator receiver... 213 3e-54 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 212 3e-54 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 212 3e-54 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 212 3e-54 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 212 4e-54 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 212 4e-54 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 212 4e-54 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 212 4e-54 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 211 5e-54 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 211 5e-54 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 211 5e-54 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 211 5e-54 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 211 5e-54 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 211 5e-54 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 211 5e-54 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 211 6e-54 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 211 6e-54 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 211 6e-54 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 211 6e-54 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 211 6e-54 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 211 7e-54 UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ 211 7e-54 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 211 7e-54 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 211 7e-54 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 211 7e-54 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 211 8e-54 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 211 8e-54 UniRef50_A4XLT7 Two component transcriptional regulator, winged ... 211 8e-54 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 211 8e-54 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 211 9e-54 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 211 9e-54 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 211 1e-53 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 210 1e-53 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 210 1e-53 UniRef50_D1U362 Two component transcriptional regulator, winged ... 210 1e-53 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 210 1e-53 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 210 1e-53 UniRef50_C1SI97 Response regulator with CheY-like receiver domai... 210 2e-53 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 210 2e-53 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 210 2e-53 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 210 2e-53 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_A4J267 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 210 2e-53 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 210 2e-53 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 209 2e-53 UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory pro... 209 2e-53 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 209 2e-53 UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 209 2e-53 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_Q1IY67 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_A9AXT6 Two component transcriptional regulator, winged ... 209 3e-53 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 209 3e-53 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 209 3e-53 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 209 3e-53 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 209 4e-53 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 209 4e-53 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 208 4e-53 UniRef50_C0WE14 Two-component system transcriptional regulator n... 208 4e-53 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 208 4e-53 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 208 4e-53 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 208 4e-53 UniRef50_A9B2W4 Two component transcriptional regulator, winged ... 208 5e-53 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 208 5e-53 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 208 5e-53 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 208 5e-53 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 208 5e-53 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 208 6e-53 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 208 6e-53 Sequences not found previously or not previously below threshold: >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 244 bits (625), Expect = 7e-64, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ E E Y + EA +G E E + +L+++D+ +PG + Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R++RE+ ++ LT + E +++ G E G DDYI KPF+PRE+ +R + LL R Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + F+ +D ++ + DG + L E+ + Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTA-DGTEVSLTPKEYELL 171 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 243 bits (621), Expect = 2e-63, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++E S E +F ++ +R ++ + E +L EF + Sbjct: 121 QVAIQAKESLS-EVIEFPDLKIYPKTRCVLVCENE-VELTVKEFEVL 165 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 241 bits (617), Expect = 7e-63, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 4/173 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLGT---VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L +E + +F GW LD R L+ PDG L +E+R + Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLL 173 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 241 bits (616), Expect = 9e-63, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ELD SRS+ G+ L R EF + Sbjct: 124 HRFTV-----DQSATLTIGKLELDTESRSV-HVSGKPISLTRKEFDLL 165 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 240 bits (615), Expect = 1e-62, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILI +DE + ++ E EGY V +A DG E I+ I+LV++DI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R + ++ ++FL+ + ++ DK+ GL +GADDY+TKPF P EL R L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + L S + + G +D R++ GEQ +L EF + Sbjct: 121 FLTLNQPK-VAESKSALEVGGVVIDPERRTV-DVYGEQIELTPKEFDIL 167 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 239 bits (611), Expect = 3e-62, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRV 126 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ E +F +D++ ++ G++ L SEF+ + Sbjct: 127 H-----ADSEPQREVLEFGELTIDVSGHKVL-VGGKEVDLTASEFKLL 168 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 238 bits (610), Expect = 4e-62, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 7/170 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R + N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 TM S+ + F +D S ++ GE L EF ++ Sbjct: 191 TMPRSEASD-----GTMTFGELTIDTASHTV-RVAGEDVSLTPKEFDLLV 234 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 238 bits (609), Expect = 5e-62, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M I++V+DE R+ + E EGY V +A +G + ++L + ++L+I+DI +P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ ++RE+ N+ ++ L+ + ++DKI GL GADDY+TKPFNP EL R ++ L R Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V + + + + ++ + + ++ +L EF + Sbjct: 121 YKKFN-VQNGYINDDIIEIDELTINTATHEV-QVGEKKVRLTPREFDIL 167 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 238 bits (609), Expect = 6e-62, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +IL+V+DE + ++ + EG+ ++++ +G + + + + L I+D+ LP Sbjct: 1 MSM-NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDI 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + +RE N ++ LT ++ E+DKI GL +GADDYITKPF P EL R + L R Sbjct: 60 DGFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +V E + F+G LD+++ + ++ L EF + Sbjct: 120 FTKYNSV-EPNQEEHLIAFSGLILDMDTHECTL-NEKKISLTPKEFSIL 166 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 237 bits (606), Expect = 1e-61, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 3/171 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILI ED+ + EGY + +A DG E +++ I+LVI+DI +P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE Q + ++FL+ + ++ DKI GL +GADDY+TKPFNP EL R L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 120 RTMNLGTV-SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L + + + G +D R++ + L EF + Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDR-IDLTPKEFDIL 172 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 237 bits (606), Expect = 1e-61, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 96/170 (56%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP Sbjct: 1 MSNE-ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL R Sbjct: 60 DGIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T + E + + +F E+D ++ ++ D ++ L E+ ++ Sbjct: 120 TQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLA-DNQEVNLTPKEYELLI 168 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 236 bits (604), Expect = 2e-61, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+ Sbjct: 79 EDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKS 138 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R Sbjct: 139 GIEICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N S Y+F GW LD R L P + +L +EF + Sbjct: 199 ENNRAPSRPVTHS--YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLL 244 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 236 bits (604), Expect = 2e-61, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V E+ ++ ++ F +D++ R +I GE+ EF ++ Sbjct: 150 LQPKPKV-EDEAALRTFVFEQLTIDLDKREVI-VAGEKVSFRPKEFDLLV 197 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 235 bits (601), Expect = 5e-61, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIV+DE R + E + EA +G E QIL ++++++D+ +P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +REQ++V ++FLT R +E DK+ GL++G DDYI KPF+P EL R ++ R Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + +E+ F +D R + DG+ L EF +L Sbjct: 121 AYHNKQKNED------LSFGPLVIDERGRKVT-VDGDPVVLTLKEFDLLL 163 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 235 bits (600), Expect = 6e-61, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 100/166 (60%), Gaps = 1/166 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP ++GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR-QA 133 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + F+GW +D R L P G + L +EF + Sbjct: 134 SALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLL 179 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + LG+ + + F G +DI+ + D ++ L E + Sbjct: 121 FLVLGSNANTQEKT-ILTFKGLTIDISKYIVTVGD-KEISLTGKELELL 167 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ-- 119 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S K LD NSRSL G +L +E++ + Sbjct: 120 -PASRRDGGERILKVGDAVLDQNSRSLT-IAGTPVELTPTEYKLL 162 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 233 bits (597), Expect = 1e-60, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 3/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++ + E + V++ D E + + +++L ++DI +P +G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L +++RE+ N ++ LT + E+DKI GL +GADDYITKPF P E+ R + L R Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ E + G L+ + + L +EF + Sbjct: 190 RYNMGT--VKAEEILEHKGLILNKKTHECFL-NERLLSLTPTEFSIL 233 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 233 bits (596), Expect = 2e-60, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 84/168 (50%), Gaps = 4/168 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ R L EGY + A DG + + +LVI+D+ LPG Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R +++V ++ LT R +E DK+ GLE GADDY++KPF REL R + LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + +E K E+ I L+ +G EF Sbjct: 147 SQTQNSQTETTGG---LKIGDLEIFIERH-LVMRNGVALDFSPKEFDL 190 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 233 bits (595), Expect = 2e-60, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE +KS EGY+V A +G E + +L+++D +P +G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R+++ + ++ LT + EVDK++G E G DDY+ KPF+ REL+ R + +L R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE-- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ L + R + G+ L +EF+ + Sbjct: 122 ---AKTINEEIVLTEGDLTLYPHKREVFLK-GKPLDLTPTEFKLL 162 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 233 bits (595), Expect = 2e-60, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 6/169 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + L+ E + + V A++ E + + ++ +I+DI +PG+ Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R +++V ++FL+ R +VDKI GL +G DDYI K +P E+ R + +L R Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S + + +F L++ +R L DG+ L E+ + Sbjct: 121 S-----ASNQPPTETILEFGHLTLNLTTREL-AVDGKNVMLTPKEYELL 163 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 232 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 1/167 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + ILI++DE + L+ + E Y V++ + + DI+L I+DI LP NG Sbjct: 19 SEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + +R++ ++ LT + E DKI GL +GADDY+TKPF P E+ R + L R Sbjct: 79 FSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +N L++ + + DGE L +EF + Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHECLL-DGELVSLTPTEFSIL 184 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 232 bits (593), Expect = 4e-60, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + S++ +E+D+ R++ G++ L EF + Sbjct: 121 SDLSKSQK------IVAPPFEMDLVKRTV-KVKGKEVNLSYREFEIL 160 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 231 bits (591), Expect = 7e-60, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +ILIV+DE + ++ + EG+ V++ G E + + ++++ I+DI LP Sbjct: 1 MN-ENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDI 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +++RE+ ++ LT + ++DKI+GL IGADDYITKPFNP E+ R + L R Sbjct: 60 DGFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119 Query: 121 TMNLGTV-SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 M ++ V Y G ++ + G++ L EF + Sbjct: 120 YMRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLF-GKEVALTPIEFSIL 168 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 231 bits (591), Expect = 7e-60, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L S + ++ +F ++ + ++ G++ KL E+ +L Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFL-GKELKLTPIEYEILL 167 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 230 bits (588), Expect = 1e-59, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P + Sbjct: 4 SMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT Sbjct: 64 GLTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + ++ +DI R + G+ L R EF + Sbjct: 124 HSFS-----KEQEATFDVGILSIDIEGR-AVSVKGKTVNLTRKEFDLL 165 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L R G +L E+ + Sbjct: 121 ----AASRQDRAGRLVVGDLVLHPRQRRA-EVAGRPLELTAREYDLL 162 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 230 bits (587), Expect = 2e-59, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 2/164 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY-S 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + ++ S I GE +L EF Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYS-IKKRGEDIELTHREFEL 165 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 230 bits (587), Expect = 2e-59, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 6/170 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG- 59 M+ ILIV+DE +K A GY V A DG ++L +L+I+DI LPG Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + + +RE +++ ++ LTGR E D+I G + GADDY+TKPF+ EL +R + +L Sbjct: 61 LNGFEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ SEE YKF ++ + + G + +L +E++ + Sbjct: 121 RSH----PSEEFPKGPVYKFGDLVINFAQKRVFVR-GREVRLTATEYQVL 165 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 229 bits (586), Expect = 2e-59, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S + FN +D+N R + D E+ +L EF + Sbjct: 134 KAAF-SSHLTTSGIINFNFLTIDLNKRQIY-KDNERIRLTGMEFSLL 178 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 228 bits (584), Expect = 4e-59, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T++ SE+ F GW LDI R L PDG +L R EF + Sbjct: 121 TLSAREASEDENQK---SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLC 167 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 228 bits (584), Expect = 4e-59, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ + F+G ++ N R ++ DG+ L EF +L Sbjct: 133 RYNGLKEQ---EKVLSFDGLTINTN-RRMVENDGKPLTLTMKEFELLL 176 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 228 bits (583), Expect = 5e-59, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 100/165 (60%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + F GW LD ++R + P+G L S++ + Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVL 170 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 228 bits (583), Expect = 5e-59, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 98/170 (57%), Gaps = 8/170 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG Sbjct: 1 MQ-PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 60 DGMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + +F E+D ++R G+ +L +EF ++ Sbjct: 120 RRG------KPVKSSVMRFTHVEIDPDAREA-RAAGQLLELTPTEFDLLI 162 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 228 bits (583), Expect = 6e-59, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 3/165 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG +GL Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V E+ + +G +++N+ + +Q L +EF + Sbjct: 124 SGVKEQ--NENVIVHSGLVINVNTHECYL-NEKQLSLTPTEFSIL 165 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 228 bits (582), Expect = 6e-59, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 91/168 (54%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++ Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +F W L+ R L+G DG L +EFR + Sbjct: 123 TPASEGASSLLEGS-IRFGEWVLNCKLRELLGADGVSVSLSGTEFRLL 169 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 228 bits (582), Expect = 7e-59, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + LD +SR + G KL SEF + Sbjct: 123 --NTPQEESKRITEGPIILDEDSREV-SVGGNSLKLTPSEFMIL 163 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 227 bits (581), Expect = 9e-59, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 98/168 (58%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++ Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR- 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + + V F G+ LD R L+ PDG Q L +EF + Sbjct: 135 -GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLL 181 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 227 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIVED+ + L + + G++ GA M +++ +L+++D LPG++ Sbjct: 11 NQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGED 70 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++L R Sbjct: 71 GFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA 130 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ F+GW +D SR L DG Q + +EF +L Sbjct: 131 SYAH---HQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILL 176 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 227 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 1/168 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T +L+V+DE ++ + + E Y++ A +G + + +LVI+D+ LP + Sbjct: 3 RTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLID 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +RE + V ++ L+ + +DK +G +GADDY+ KPF+P EL +R + LL R+ Sbjct: 63 GYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + R E++ S + G+ L EF + Sbjct: 123 FDKEQSVSKVRKTTKISKGELEINCESHEVFVR-GKPVYLTPKEFELL 169 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 227 bits (580), Expect = 1e-58, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIV+D+ + + EG+ V A +G E +I++ I L I+DI +P Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L R +RE+ ++ +MFL+ + ++VDK++G GADDYI KPF+ E R + L R Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + G E+D SR+++ GE L ++E+ + Sbjct: 136 YTYFNQNAVQVIEKK-ISIRGLEIDEVSRTVMLY-GETINLTKTEYDIL 182 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 226 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 8/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG +G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R+ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS- 140 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E + ELD +R+ GE+ L RSEF M Sbjct: 141 ------SEPLPNAVLRAGELELDPTTRT-FLVRGERVDLTRSEFELM 180 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 226 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 5/174 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 120 RTMNLGTV---SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R + ++E + F L R + GE L E+ +L Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAV-VKGETLSLSPLEYDLLL 173 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 226 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 6/175 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE L + GY+V ATDGA+ + +++D+ LP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + ++LR++ ++ +T +++E DK+ GLE+GADDYITKPF+PRE+ R + ++ Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 120 RTMNLG----TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 RT + ++D N + +G+ L EF ++ Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRV-ARNGKNISLTPKEFELLV 174 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 226 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T IL+++D+ L + EGY + A G + + + + +LV++D+ +PG Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +RE + V ++ LT + E D+ILGLE+GADDY+ KP++ REL R + LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++ NG EL+ ++ + DGE + SEF+ + Sbjct: 121 IE--LDKNQKEDDNGILACNGVELNFDTYRVYS-DGEHIPMTTSEFKVL 166 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 226 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 2/168 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + T S ++D N R + + E+ +L EF + Sbjct: 124 DKITTNLGVPNS-GIISIGFLKIDTNKRQVY-KNNERVRLTGMEFSLL 169 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 226 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 1/170 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L+RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ V+ + F+GWEL R+L+ P G L +EFR + Sbjct: 149 RSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLL 198 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 226 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 TMNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + VS + + G EL+ +++ +I DGE K+ EF+ + Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVIL-DGELIKVTPIEFKIL 169 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 226 bits (577), Expect = 3e-58, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 9/170 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + L Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S + E+ S + GEQ L EF + Sbjct: 121 -----EERRNSTPPPLSLTWGDLEIWPESYMVTIK-GEQVTLTGKEFELL 164 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 226 bits (577), Expect = 3e-58, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 96/170 (56%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++ Sbjct: 3 NNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGED 62 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L Sbjct: 63 GLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R L + + F W+LD +R L+ G L +E+R + Sbjct: 123 RARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLL 172 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 225 bits (576), Expect = 3e-58, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + LK + +V A DG E + + +++++DI LP +GL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE +NV ++ LT + +++DKILGL+ GADDYITKPFN E+ R + +L R Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR---N 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++++ + K ++D +SRSL D ++ L EF + Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIAD-KEINLTAKEFDLL 173 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 225 bits (576), Expect = 3e-58, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 93/169 (55%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +ER + +FNGW LD R L P + EF +L Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLL 190 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 225 bits (576), Expect = 4e-58, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 7/168 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE R L + GY+V A DG Q + +LV++DI LP +GL + Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQ--RAPEADLVLLDIMLPEVDGLEV 60 Query: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R+L+ + + + ++ LT + E+D++LGLE+GADDY+ KPF+ REL R + +L R+ Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 123 NLGTVS-EERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ S E + ES G LD +S D + L E+ + Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHD-KTIALTPKEYELL 167 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 2/169 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T +L+V+DE L EG+ TDG + + +++DI LP +G Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + + LR + + +M ++ + +E DK+L LE+GADDY+TKPF+PREL R + +L RT Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E Y + L + D E L E+ +L Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHEVY-KDKELLPLTPKEYELLL 176 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 225 bits (574), Expect = 5e-58, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 1/168 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV- 145 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S Y+F GW L+ + R L+ P G + L E+ +L Sbjct: 146 GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLL 193 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 92/168 (54%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + F GW LD+ R L D L EF +L Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLL 168 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 3/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++ Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + F ++L++ +R + D E L EF + Sbjct: 123 -QANELPGAPSQEEAVIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVL 169 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 69/171 (40%), Positives = 99/171 (57%), Gaps = 3/171 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q HILIVED+ R L G+ DG+++ + + +LV+MD+ LPG++ Sbjct: 10 QRDHILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGED 69 Query: 62 GLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL L R LR A++ ++ LT R E D+I+GLE+GADDY+ KPFNPREL R +++ Sbjct: 70 GLTLTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVM 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + V+ Y+F+GW LDI SR L PDGE L R E+ + Sbjct: 130 RRARSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELL 180 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 4/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+ Sbjct: 3 QQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 63 GLEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + G L + + + +G+ +L +EF+ + Sbjct: 123 KG---PENNNPNSGQINVAGVVLHV-AHQKLEIEGDSLELSSTEFKLL 166 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ IL++ED + E Y V +DGAE + + +L+I+DI LP Sbjct: 1 MQ-KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + ++ LT + +E D+++GLE GADDY+TKPF+ REL R + L Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 RT S ++ ++ F +D R L D ++ L EF +L Sbjct: 120 RTDMSQKESTP-QADDALHFGELCIDKTKRRLTIGD-KEITLTAKEFDLLL 168 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 224 bits (573), Expect = 8e-58, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R LK+ E + + A+DG E ++E++ +L+I+D+ LP +G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R+ ++ LT + E DK+ G GADDY+ KPF+ REL R + +L R+ Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+ + Y+ ++ N ++ +G L R+EF ++ Sbjct: 122 Q----KAEKAEIFVYQDGRLKIHPNRMKVL-VNGRDADLTRTEFNILV 164 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP + Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT Sbjct: 64 GEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N G + ++D+ D E +L +EF+ + Sbjct: 124 NNEGLKAHLIE----LNGGDLKVDLRDMETWKKD-ELVELTATEFKLL 166 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 7/168 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL++ED+ L+ + EG+DVF A DG E + +++++D+ LP +G Sbjct: 2 REKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + + +RE + V ++ LT +D DK++G + GADDY+TKPF+ EL R + LL RT Sbjct: 62 MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGE-QYKLPRSEFRAM 169 ++F ++ ++ + G+ +L + EF + Sbjct: 122 KS------VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELL 163 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 6/172 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + EGYDV +A D E +++ +++ I+DI LPG Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G L R+LR + N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ R + + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + E + G E+D+ + D ++ L EF + Sbjct: 145 FRRIQ--LSAQEREERPKKIVAKGLEIDVERYEVKVHD-QKVSLTPLEFELL 193 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T ILIV+D+ R+ L+ +G +V D A + + L +L+++D+ +PG +G Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L R+LR + + ++ LT R ++VD+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E + F + LD +R+L DG+ L SEF + Sbjct: 186 RATPSAAAP-EQREPFAFGRFVLDFQARTL-SIDGKPATLSSSEFALL 231 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ILI +DE + L E EGY +A +G EM I+++ ++LV++D+ +P + Sbjct: 4 NQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ RELR + ++ +T + +E D++ GL GADDYI KPF+P+EL R + R Sbjct: 64 GMEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRN 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + S E ++ ++++NSR + DGE L R EF ++ Sbjct: 124 YGY----NDDESKEELQYKSIKVNLNSRKVF-IDGEAVSLTRKEFDLLV 167 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 89/171 (52%), Gaps = 8/171 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I ++ED+ L F+ EG+DV +G + + + ++V++D+ +P +G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 63 LLLARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +R + L+ LT + E+DKI+GLE+GADDY+TKPF+ REL R + LL Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R+ +L + + YKF ++ + G+ L ++F+ +L Sbjct: 121 RSKSLHFPTAKPE----YKFGDLKISPEKFEVTIK-GQPVHLTTTQFKLLL 166 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 223 bits (569), Expect = 2e-57, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 14/180 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VEDE + EGY+V T G E E D +L+I+D+ LPG +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 LLLARELREQA--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS- 119 L + R++R + ++ ++ LT + +E++KI+GLE+GADDY+TKPF+PREL R + L Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 120 RTMNLGTVSEERRSVESY----------KFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + S + + K + + ++ +L EF + Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAY-IENQELQLTPKEFELL 179 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 223 bits (569), Expect = 3e-57, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 94/170 (55%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + V + Y+F + LD SR L D ++ L +++ ++ Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKE-SLSGADYNLLM 171 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 222 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 8/168 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +G Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L FNG ++ S + +GE+ L E+ ++ Sbjct: 122 TLN-------DKNILDFNGLTINKLSHEV-KLNGEELLLSPKEYDLLI 161 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 222 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 9/169 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +L+V+D+ L + EGY+ +DG + ++V++D+ LPG+N Sbjct: 14 SRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRN 73 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + +++R Q+ V ++ LT + + +D + GLE GADDY+TKPF P EL R R L R Sbjct: 74 GLQICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR- 132 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E E+ ++D+ + + DG L EF ++ Sbjct: 133 -------GETGQAENLSIGDVQIDVPAHQVT-RDGVPIALTPLEFDLLV 173 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 222 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 9/172 (5%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M IL+V+DE + +K+ E +G+DV A DG I S +I+L+++D+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++V ++ LT + E +KI G+ +GADDY+TKPF+ REL +R R LL Sbjct: 61 MTGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLR 120 Query: 120 RTMNLGTVSEERRSVESYKF--NGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + F E+DI ++ G L +EF+ + Sbjct: 121 RAYRDFSP-----MADILTFNNGDLEVDIKKM-VVKKQGVVVNLTTNEFKIL 166 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 222 bits (567), Expect = 4e-57, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 5/166 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +E + +D +R+ G L EF + Sbjct: 176 TVPGAE----AGVLRAGTLVVDAAARTATRH-GVPLGLTVREFDLL 216 >UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF57_HELMI Length = 277 Score = 222 bits (567), Expect = 4e-57, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 40/206 (19%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I I +DE ++ E EG++ T+G ++ ++ +LVI+DI +PG NG Sbjct: 1 MTRIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT- 121 L + + LR ++V ++ ++ +D+E+D+ILGLE+G DDY++KPF+PREL +R +N+L R Sbjct: 61 LDVCKRLRRDSDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILRRVW 120 Query: 122 --------------------------------------MNLGTVSEERRSVESYKFNGWE 143 + + Sbjct: 121 HTRAGNSADGGRHRGNEPTARSSPVVSDALQSAIGSSEAAQAATGTPTTVAPGFACHDLR 180 Query: 144 LDINSRSLIGPDGEQYKLPRSEFRAM 169 +D++ R + GP+GE L EF + Sbjct: 181 IDLDERRITGPNGE-IDLTAKEFDLL 205 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 222 bits (567), Expect = 4e-57, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ L+ E + + V A D E I ++ I +++DI +PG+NG Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R +R ++ V ++FL+ R ++VDKI GL +G DDYI K +P E+ R + +L R+ Sbjct: 66 LCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRS--- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L++++R ++ DG L EF + Sbjct: 123 --ATRRPMEERVLDYGRLRLNLSTREVV-VDGNNVVLTPKEFELL 164 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 222 bits (567), Expect = 4e-57, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE ++ + GYDV +DG + ++L + +L+++D+ LP +G Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + RELR+Q+N V ++ LT + DKI GL+ GADDY+TKPF+P+EL R + + R Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L +E ++ + R ++ DG +L EF +L Sbjct: 122 QTLPGQAE----STTFDIGRLTVRAEQREVL-IDGRTIELTPKEFELLL 165 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 221 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 10/172 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R + V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + R + + + + +D +S + D E LP EF + Sbjct: 121 IRRDQDF------KDKDKILEKGDLTVDAHSYKVFVKDNE-VDLPPKEFELL 165 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 221 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + + + F W+LD +R LI DG L +E+R + Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLL 173 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 221 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ + E +D DG E EY NL+++D+ LPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + RE+R+ + + ++ L+ + DK+LGLE+GADDY+ KPF+ +EL R + +L Sbjct: 61 IDGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 120 RTMNLGTVSEE---RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 R + + SE+ + + + ++ ++ S+ G+ ++P E Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYF-GDSIEMPPKELEL 171 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 221 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 7/169 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D+ R L++ G+ V DG L +LVI+D+ LP ++G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 64 LLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 L R +R+ QA V ++ LT +E D+++GLE+GADDY+ KPF+PREL R + LL R Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + F+ W LD S L DGE+ L ++F + Sbjct: 145 SEF----GQAAPGSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALL 189 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 221 bits (566), Expect = 5e-57, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 9/172 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +D+ R L+ E+EGY V EA DGAE + I+LV++DI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +RE + + ++ ++ + + DKI+GL++GADDY+TKPFNP E R R+ L R + Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 126 TVSEERRS--------VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + LD+++ ++ E L EFR + Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDAC-VLHRGDEPLDLTPVEFRML 181 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 221 bits (565), Expect = 6e-57, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL V+D+ L+ EG++V A+ G E Q + +LVI+D+ +PG +G Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ++L+ Q V ++ L+ R EVD+++G +G DDY TKPF+P EL +R + +L R Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG-- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + K+ LD R++ + + +L +F + Sbjct: 122 ---EPKVNLENMLKYGNLTLDYTKRTV-AVNNSKVELTPKQFELL 162 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 221 bits (565), Expect = 7e-57, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 9/175 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKN 61 HILIV+D L L+ I E EG+ V A G + +LS+ NL+++DI +P + Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L ++R + ++ ++FL+ + VDK++G EIGADDYITKPF+ EL R R L R Sbjct: 62 GYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRY 121 Query: 122 MNLGTVSEERRSVE-------SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +EE+ E KF E+ + S+ + ++ +L EF+ + Sbjct: 122 ERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCN-QKIELSTKEFQLL 175 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 221 bits (564), Expect = 8e-57, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 6/165 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ-- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + K+ G E+ + R ++ D + ++ EF + Sbjct: 124 ---AADPATNWQLKYPGLEIRADIRKVL-VDAAESEVTPREFDLL 164 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 221 bits (564), Expect = 9e-57, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+++D+ R+ L F + V DG + L + ++LVI+D+ LPG Sbjct: 1 MSPHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGD 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R+ R+ + V ++ LT +E DK++GLE+GADDY+ KPF+ REL R + LL R Sbjct: 61 DGFTLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E FNGW+LD+ R LI P + L EF + Sbjct: 121 NQIVQSPGTE---ARFLCFNGWKLDLVRRELIDPQKQSEPLSGIEFTLL 166 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 221 bits (564), Expect = 9e-57, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+DE L+ + +DV AT+GA+ ++ ++V++D+ LP +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +R ++ + ++ LT +D E DK+ GLE+GADDY+ KPF+PRE+ R +L R Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 122 MNLGTVSEERRSV----ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++ + + + +D + + + KL EF M Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKV-SVNDQNLKLTPKEFELM 171 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR- 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E + ES G LD GP+G L EF + Sbjct: 123 ---GQMDAEPMAGESITAGGITLDEARHIAEGPNG-SIDLTPREFELL 166 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 220 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGK 60 + IL++ED+ + Y+V A G E IL E I+L+I+D+ LP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 61 NGLLLARELR-----EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + +++R + V ++ LT + + D++LGLE+GADDYI+KPF PREL R R Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L R + S F + +S + D + +L +F+ + Sbjct: 122 AVLRRHEQPNQADSQSDS---LTFGRLSVFPDSHEVT-IDDKPVRLTTHQFQLL 171 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 3/170 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT + + +F GW LD ++R L+ PDG L +E+R + Sbjct: 121 RTEGGARRDQPETTP--LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLL 168 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 4/166 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + S G+D +A G + + ++V++D+ LP +GL Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R ++ ++ LT R +E DKI GL +GADDYITKPF+ REL R +L R Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR---P 158 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T + + LD + + +L R+EF ++ Sbjct: 159 RTSTTPPQVTTPLIVGDLILDPVAHQV-RVGETTVELTRTEFELLV 203 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 7/169 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP + Sbjct: 15 KTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKID 74 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 75 GITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQ 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +E Y+F +DI SR++ E L EF ++ Sbjct: 135 EKGEVKKDE------YQFRDLMVDIGSRTV-NRGEEVINLTPKEFDILV 176 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 11/173 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+ILIVED+ ++ E E + DG +I E +L+++D+ LP +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +R+Q + ++ LT + E+D+I+GL GADDY+ KPF+PREL R R LL Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG---EQYKLPRSEFRAM 169 R + G + Y+ N +++D++ G E+ +L EF + Sbjct: 131 RQLRQGQPVGQ-----IYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLL 178 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NG Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S ++ +F+ +E + R+L D ++ L EF + Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEFSLL 168 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++++EDE + AEG++V A DG + ++E ++V++D+ LPG +GL Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R ++ V ++ LT RD+E D ++GL +GADDY+TKPF+ REL R + LL R Sbjct: 76 VCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRA 135 Query: 125 GTVSE-ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E E+ + +D R ++ G L +EF +L Sbjct: 136 APPPPSESEKQEALQIGDLVIDRAGRRVM-RAGAPAHLTPTEFDLLL 181 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 94/166 (56%), Gaps = 9/166 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKN 61 +L++EDE R+ LK+ E GY V A +G E + +E I ++++DI LP + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 + ++ G +D++SR + DG++ +L EF Sbjct: 122 YGSQDDGKT-------EYQGIVMDVHSREVT-VDGKKIELTPKEFD 159 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE ++ + EGY A G E + +LV++D+ LPG Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + R +R A + ++ LT + E D + GLEIGA+DYI+KPF+PREL R R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R + + + + +D+ ++ D L SEF+ + Sbjct: 121 LRRRTRVEKPATQA----TVIAGPLSMDVGRHRVV-VDKNALDLTHSEFQVL 167 >UniRef50_C7RI96 Two component transcriptional regulator, winged helix family n=4 Tax=Anaerococcus RepID=C7RI96_ANAPD Length = 227 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 3/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+VED+ + ++ E E Y + AT + + + E + +L I+DI LPG+ Sbjct: 1 MN-YSVLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGE 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++RE N ++ LT +D+E KI GL GADDY+TKPF P EL R + L R Sbjct: 60 NGYYICAKIRESYNYPIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N ++E + +L+I SR ++ DG++ L EF + Sbjct: 120 YNNYNLKTKEGTG-NILTYQNVDLNIKSREVL-VDGQEIDLTPIEFIIL 166 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 91/167 (54%), Gaps = 2/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+++D+ L + F GY + A +E L + I+D+ LP +G Sbjct: 18 MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDG 77 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RE+R+++++ ++ LT R +D+++GLE+GADDY+ KPF PREL R + +L R Sbjct: 78 FALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQR 137 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + F+G +D++ R ++ GE+ +L +EF + Sbjct: 138 STPAAANGNGTQHRV-FDGLSIDLDRRQVLRH-GERVELTGTEFELL 182 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 5/174 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N+ + + + W + S I G+ +L R E+R + Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQ-IQYHGQILQLTRYEYRLLF 174 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+VED+ R + + G+ DG EM + + +L++MD+ LPG +G Sbjct: 19 APYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR+ + V ++ ++ R E+D++LGLE+GADDYI KPF +EL R R +L R Sbjct: 79 FDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-- 136 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ F GW++D+ R L P G L +E+ +L Sbjct: 137 GPVNEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLL 184 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 1/167 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 HILIVEDE + L GY +G E+ + +L+++D+ LPGK+G Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE++E +N+A++ +T R +E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T + + EL+ ++ + +L EF + Sbjct: 121 PPLTTGINTNIAKQSQTTTVELNTDNYQAT-INQHPVELTAIEFNLL 166 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 219 bits (560), Expect = 2e-56, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 I++VEDE ++ EG+ V DGA + L+ + + +L+++D+ LP +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +R+ ++ LT R E+D++LGLE+GADDY+TKPF+ REL R +L R Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +S +D SR + G+ L EF + Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSR-GQPVHLTAKEFDLL 169 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 219 bits (560), Expect = 3e-56, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VEDE+ + S E GY+V A DG + E D ++VI+D+ LPG +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN-LG 125 R LR ++ ++ LT R +EVD ++GL +GADDY+TKPF+PREL R + +L R G Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ + F +D+ +R + D E L R+EF + Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRD-ELVPLTRTEFDLL 229 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 219 bits (560), Expect = 3e-56, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 4/163 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+DE RN L+ EG++V EAT+G E ++ + + +++++D+ LP +G + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++RE+ +VA++ LT R DK+ GL IGADDY+TKPF P EL R +L+ R+ Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 ++ RR + +F + R +I D + + EF Sbjct: 136 SI---RRQEAALEFPHLRILPEGREVIIHD-HSVEFTQKEFDL 174 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 68 LEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRAR 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + E LD+++R DG + L EF ++ Sbjct: 128 -----TSQPAEGEVLTDGALRLDLDARRGTL-DGGELALTGREFDLLV 169 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 9/172 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDI-NLVIMDINLPGKN 61 +LIVED+ R+ ++ EG + DG ++LS+ +LV++D+ LPG + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 62 GLLLARELREQAN----VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 G+ + RELRE + V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R S E+R +F G E+D+ R + GEQ +L EF + Sbjct: 121 LRRQRMNAQASPEQRK---LEFPGLEIDLLRRRVTAR-GEQVELTAREFEVL 168 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 100/168 (59%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++ Sbjct: 5 NLPHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGED 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 65 GVQIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRA 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +Y+F+GWEL++ +R L P G +L EF + Sbjct: 125 GATAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLL 172 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 219 bits (559), Expect = 3e-56, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++D+ + +EG+DV DG L + L ++DI +PGKNG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ +++ ++ LT R E+D+ILGLE+GADDY+ KP NPREL R R +L R+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +++ + +F E SR++ GE L +E+ + Sbjct: 123 ESDDKQET----RFGSLEWHPQSRTITEH-GEPVDLTATEYNIL 161 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 218 bits (558), Expect = 4e-56, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE R+ L+ E EG+ V EA DG + +LV++D+ +P G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R +++ ++ LT + + DKILGLE+GADDY+TKPFN REL R R +L RT Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + LD R++ G L SEF + Sbjct: 121 QTPL------EPDVLRAADIVLDRTGRTV-RVGGRYVDLTPSEFAIL 160 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 218 bits (558), Expect = 4e-56, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P Sbjct: 1 MNN-NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L R Sbjct: 60 DGFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T L T + S + + +D + + E L EF + Sbjct: 120 TYFLNTKIQ--VSDDIIRIESMIIDKWKHKITIANNE-VSLTAREFEIL 165 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 218 bits (558), Expect = 4e-56, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 9/168 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE RN L+ EGY+V EA DG + ++ E +LVI+D+ LP K+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RE+++ ++ LT RD+ D++ G E+GADDYITKPFN + L R ++LL +T Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 N+ + ++ S S+ GE +L E+ ++ Sbjct: 126 NM--------VESIIEIGDLVINDTSHSVSNSKGE-IELAPKEYDLLV 164 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 218 bits (558), Expect = 4e-56, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 90/169 (53%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D + L E + V A +G EM + L +L+I+DI LPG Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L ++LR Q+ V ++ LT ++ D+I GLEIGADDYITK FNPREL R + LL R Sbjct: 69 DGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRR 128 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + E + KF W D R L DGE L +++ + Sbjct: 129 STFSHSQGER-----TLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLL 172 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 218 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ T L+ AEG+ V +A+DG E + +LVI+D+ +P +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R + V ++ LT R + VDK++G +GADDY+TKPF+ EL +R +L R Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM--- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +F E++ ++R++ D +L EF + Sbjct: 123 ----PTLPESRTLRFGHLEINKSTRTVHVGDRNP-ELTPREFDLL 162 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 218 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 9/168 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + + +G++ DG + ++ +LV++D+ LPG +G Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R +++V ++ LT + + D + GLE GADDY+ KPF P EL R R L Sbjct: 91 IEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--- 147 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++++ E+ + +D+ L+ GE+ L EF ++ Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGH-LVTRGGERISLTPLEFDLLV 189 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 218 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 3/168 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED + L GY V+ A DG + ++ +LVI+D LP +GL Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R +R+ + ++ LT R E D ++GLE+GADDY+TKPF REL R R LL R Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 124 LGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ + + E ++ LD + + ++ L +EF + Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQ-QELDLTPTEFAIL 172 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 218 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 6/174 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 TMNL-----GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + G EL+ N++ + DG+ K EF+ + Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEV-NIDGKYIKTTPIEFKIL 173 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 218 bits (557), Expect = 5e-56, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 8/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V+ + ++ + D L +EF+ +L Sbjct: 125 QVTN-------VSISNLSINPERLEALIGD-TLLALTPTEFKILL 161 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 218 bits (556), Expect = 7e-56, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 3/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++DEL R+ + + + EG+ V A +G L+ + +LV++D+ LP +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E+ +Q+N+ ++ ++ +D +DK+LGLE+GA+DYITKPF+ REL R + +L R Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + E++ ++ ++ +G Q L E+ + Sbjct: 121 HNDEAKYEYTTK--LVCGELEINPDT-KVVQKNGTQILLTAKEYGIL 164 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 218 bits (556), Expect = 8e-56, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 6/168 (3%) Query: 8 IVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLAR 67 +VEDE + + AEGY V A DG ++ ++V++D+ LPG +GL + R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 68 ELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT- 126 ++ V ++ LT RD+E DK++GL +GADDY+TKPF+ REL R L+ R Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 127 VSEERRSVESYKF----NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V S E+ +F E+D R + G + L +EF ++ Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRV-RRAGTEVHLTPTEFDLLV 188 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 218 bits (556), Expect = 8e-56, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED+ +K E E + V DG + E LV++D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++R + V ++ ++ + + DK+ +GADDY+TKPF+P ELT R + + R Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+R +F E+DI R + GEQ L EF +L Sbjct: 123 PQQEDR-----LQFIDVEIDIKGRRVFAR-GEQISLTAKEFELLL 161 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 217 bits (555), Expect = 9e-56, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP +G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +++RE + +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + RT Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG-EQYKLPRSEFRAML 170 ++ E+ +D +I G + L EF ++ Sbjct: 121 TQ-PIEQPVEQASETIVVGDLSVDET--EVIAKKGDHKLHLTPKEFELLV 167 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 217 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 2/169 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+D+ + GYDV A DG + +IL + VI+D+ +P +G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR+Q+++ ++ LT E D+I+GLE+GADDY+ K F+ REL R R + R Sbjct: 70 FEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 123 -NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ + + + E+ + +R+ G+ L E+ +L Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYL-SGKPLNLTPLEYDLLL 177 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 217 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T ILIV+DE RN ++ +GY++ EA +G E + + + L+I+D+ +P Sbjct: 1 MDT-KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + E+R++ + ++ LT R DK+ GL+IGADDY+TKPF P EL R LL Sbjct: 60 DGWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR 167 R V + + F+ ++D++ + D L EF Sbjct: 120 RA-----VVNQTTQTKQLHFHELKMDVDDHKVFVQDN-PVHLTPKEFE 161 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 217 bits (554), Expect = 1e-55, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 8/169 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R + E GY+V EA G + +L+E+ +LV++D+ LPG + Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GLLLARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + +RE ++ LT + + DKI+GLE+GADDY+ KPFNP EL R + +L R Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 Y + LD + L+ + ++ +L +E+ + Sbjct: 124 RDRYEAGRTG------YTYGSLHLDTAANKLL-KNNQEVELTPTEYSLL 165 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 217 bits (554), Expect = 1e-55, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVED+L + L+ + +V DG + D +L+++D+++P NG+ + Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ N ++ +T + E+DK+LGLEIGADDYITKPF+ REL RA+ ++ R+ Sbjct: 70 CRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAAN 129 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + ++ E F ++++ R + +G++ L EF ++ Sbjct: 130 QQTNDSKTAE-LDFGDLKVNVEMRRVTL-EGKKIDLSPKEFDLLI 172 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 216 bits (553), Expect = 1e-55, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK-LPRSEFRAM 169 G + +E+ F ++ +R ++ +GE + L EF + Sbjct: 122 GKAVIDEDMIETECF---TINKKTREVLL-NGEPVENLTPKEFDLL 163 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 55/174 (31%), Positives = 97/174 (55%), Gaps = 5/174 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLP 58 M+ IL+V+D+ + ++ +EGY+V +A D IL E DI+L I+DI +P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G +GL + +++RE +++ ++ L+ + ++DKI+GL GADDY+TKPFNP ELT R + L Sbjct: 81 GMDGLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANL 140 Query: 119 SRTMNLGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 R + + E + ++ ++R + D ++ KL E+ + Sbjct: 141 RRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYD-KEAKLTPIEYDILC 193 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 1/168 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+L K E ++V TDG + E +L+I+D+ LP +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + + +V ++ ++ + E+DKI GL +GADDYITKPF+P EL R ++ + Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L ++ + G E++ +SR +I + ++ L + EF +L Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVI-INDKEVNLAQKEFDLLL 167 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+++VEDE+ + ++ EA G++V DG E ++ + NL+I+D+ +P +G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++REQ+++ ++ +T R E+D++LGL +GADDY+ KPF+P+EL R + +L R Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +D + + + L +EFR + Sbjct: 121 RKAEPEQNDL---------FRIDKAQQRIWYKQ-KSLNLTPTEFRLL 157 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + ILI++DE + +K +G+ V AT+G+ ++ + ++ +L+I+D+ LP Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL L + LR+ ++FL+ + ++DKILGL +G DDYITKPF+P EL R L R Sbjct: 61 NGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + + G +D + +L D + L EF + Sbjct: 121 NRILTNQTN-SADLSILNIAGLTIDFANYTLY-VDDKPVVLTVKEFEIL 167 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 1/170 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ +N K+ EG+ + A GAE Q+ + +L+I+D+ LP Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R +R + V ++FL+GR++++D+I+G IG DDYITKPF+P L + ++ + R Sbjct: 61 DGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + + + F +D + + +G+ L EF+ + Sbjct: 121 YKELSGSPKAASNGRALIFGELAIDRDCCEVT-REGKPISLAAKEFQLLC 169 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 216 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL---- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E R + E+D N+ ++ DGE L +EF+ + Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYTVT-RDGEPLDLTPTEFKIL 163 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + + F W+LD +R L+ G L +E+R + Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLL 172 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 8/168 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+VEDE + L GY DG + +LV++DI LPG + Sbjct: 3 QERKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + RELR + + ++ +T R E+D++LGLE+GADDYI KPF+PRE+ R +L R Sbjct: 63 GTAVCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRM 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 V + G + +G + L +EFR M Sbjct: 123 EWGNPVPASGPAQLEIDDAGLRI--------CINGNRLPLTPTEFRLM 162 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 4/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R+ + E G +G E I+L+I+DI +P +G Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++R+ + + ++FL+ RD E+DK+LGLEIG DDY+TKPF+PREL R + +L R+ Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N +E R + LD R+++ D + EF + Sbjct: 122 N---EAEPERRRAIFVAGELSLDRQGRTVMFGD-SAISMTVLEFAIL 164 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 4/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE + L + EG++ DG ++V++D+ LPG +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +D+ ++ +GE LP EF + Sbjct: 121 DNDDA---GADDGVLEAGPVRMDVERH-VVSVNGEPITLPLKEFDLL 163 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R S + F GW LD+ R L PD E L EF + Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLL 170 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 216 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 5/173 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+V+DE ++ G+++ +G + +I + +L+++D+ LP Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL + R +R ++ LT + E DK++GL +GADDYITKPF REL R R + Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120 Query: 118 LSRTMNLGTVSEE-RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R M+ + + E + +D+N ++ E + SEF+ + Sbjct: 121 LRRVMDSKSTTAETATDTNIIQVQDITIDVNRH-IVKKQDEIIEFTLSEFKIL 172 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + P +L+V+DE + ++ G+DV A G E + +L+I+D+ LP + Sbjct: 19 RAPRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDAD 78 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + R LR VA+++LT RD DKI GL G DDYITKPF EL R R +L R Sbjct: 79 GFEVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T E + + ELD ++ L+ + +L +EF + Sbjct: 139 TRR--PAPEPSPAPGLLTYADVELDPDAH-LVRRADQPVELSPTEFSLL 184 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+V+DE ++ E EG V AT+G E + + E ++V++D+ +P + Sbjct: 5 KDKLVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R +R + V ++ LT +D E D++ GLE+GADDY+ KPF+ REL R R +L R Sbjct: 65 GFEALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRH 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + V+ + +D R ++ DG++ L +E+R + Sbjct: 125 YTQPPIPQTLVKVD----DRLSIDFARREVL-VDGKRVNLRPTEYRLL 167 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+L+VEDE L+ E EGY V A DG + E +LV++D LP +G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + R LR E ANV ++ LT R E D++ GL+ GADDY+ KPF+ EL R R +L Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + + +D + + D + L +EFR + Sbjct: 122 RIR-------PGLAEDVIEAGDITMDRVAHRVKRAD-REIHLGPTEFRLL 163 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 215 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 11/173 (6%) Query: 1 MQTP---HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL 57 M P I++V+DE R L + G++V A G+E +++ + +L+++D+ L Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65 Query: 58 PGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 P +G + R +R++ +++LT RD+ DK++GL +G DDY+TKPF+ E+ R R Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L RT E+ + E++ +S + G+ L +E++ + Sbjct: 126 ILRRTQ------EQVEDDPIIRVGDLEINEDSHDV-SRAGQPIDLSPTEYKLL 171 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 215 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LIV+DE ++ EAEGY V A DG + L ++ V++D+ +PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE +V ++FLT R + DKI GL +GADD+I K P E+ R + +L Sbjct: 61 PSGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E F +D+ + + DG+ +L EF + Sbjct: 121 RYRR-----GEPAPRAVLDFGRLVIDVQAHEV-RVDGKPVQLTAREFELL 164 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 215 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 3/167 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 64 LLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR+ + ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR-Q 139 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + VE F W LD+++R+L +G+ L EF + Sbjct: 140 VREVPGAPSQQVEVVSFGSWALDLSTRTLT-REGQVVTLTTGEFAVL 185 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 215 bits (549), Expect = 4e-55, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 7/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + +E+ + LD R + GE+ ++ EF+ + Sbjct: 121 WKQMKSHAEQTA------ISALVLDKEKRLVYSF-GEEVEVTSKEFQVL 162 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 4/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ +DE R+ ++ E +GY V A DG + I+LVI+D+ +P Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R+LRE+ +V ++FL+ R E D+ILGLE+G DDY+TKPF+PREL R + +L R Sbjct: 61 DGLNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + LD + L D ++ L +EFR + Sbjct: 121 VAARRGADDAPPA---LVYERLTLDPAAHEL-RVDDDKIALTVTEFRVL 165 >UniRef50_A6DKJ7 Response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKJ7_9BACT Length = 223 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 87/138 (63%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P ILIVEDE + ++ + EG+ A+ A+ + L+E INL+I+DI LP NG Sbjct: 1 MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R+LR N+ ++ LT R +EVD+I+GLEIGADDY+TKPF+PREL+ R +++L RT Sbjct: 61 FDFCRKLRASQNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLRRTQ 120 Query: 123 NLGTVSEERRSVESYKFN 140 N + +++ K + Sbjct: 121 NSFEIESPKQAEGKLKVD 138 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 2/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LIV+D+ + + GY VF A E ++L I+L+++DI LPG+N Sbjct: 4 SNKTLLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGEN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L + +R+ + + ++ ++ + ++I+GLE+GADDY+ KPFNPREL R + RT Sbjct: 64 GLTLCQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ T + + + ++F+GW+LD +R L PDG L SEF A+L Sbjct: 124 EDVETAAAPK--AQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALL 170 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 11/172 (6%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L RT S + G LD S + DG+ ++ +E+R + Sbjct: 121 LRRTG-------PGDSEAPIEVGGLLLDPISHRVT-IDGKPAEMGPTEYRLL 164 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 1/170 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + IL+ +D+ + E + V A G M QIL + I++V++D+ LP Sbjct: 1 MSSEGQILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L Sbjct: 61 EDGLQLCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R +L + SY F+GW +D SR+L P G + L E + Sbjct: 121 RARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALL 170 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+VED+ + A G+ V A DG + +L+++D LPG +G Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R + +V ++ LT + ++I GLE GADDYI+KPF+PREL +R +++L R++ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG- 159 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ + LD ++ S++ GE+ L EF + Sbjct: 160 -----DLTPEATFTLGEFTLDASAHSIV-RAGEELALTAREFDLL 198 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 8/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I++V+DE R L + G++V A G+E +++ + NL++MD+ LP +G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 66 ARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R +R+ V ++FLT RD+ DKI+GL +G DDY+TKPF+ E+ R R +L RT Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ-- 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E K E++ +S + G +L +E++ + Sbjct: 127 ----EPDEETHIIKVADLEINEDSHDVTRC-GVPIELSPTEYKLL 166 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 10/175 (5%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +I++ +DE + + E EG++V+ A +G E ++ E+ +L+++D+ +P +GL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +R+ + ++ LT R E D++LGL +GADDY+TKPF+PREL +R N+L R Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 124 LGTVSEERRSVESYK---------FNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 S R E G + R + +L EF + Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRV-SVLESDVELTVKEFDLL 176 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 215 bits (549), Expect = 5e-55, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 97/169 (57%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP IL+V+D+ R L E + + V A AE+ Q L+ I+LV++D+ LP + Sbjct: 33 QTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGS 92 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL R+LR + N + ++ LT +VD+ILGLE+GADDY++KPFNPREL R R +L R Sbjct: 93 GLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR 152 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R+ Y+F G+ D RS++ P G +L +EF + Sbjct: 153 RSETPAPVGASRA---YRFEGFVADPQVRSVVDPTGTAIELTGAEFDLL 198 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 215 bits (548), Expect = 6e-55, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIVED++ N +K EGYD+ +A G E + + ++VIMDI +P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ R +RE++ V ++ L+ + + DKI+GL +GADDYI KPF+ EL R + + R Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + + Y++ + D+N+ ++ G++ L E + + Sbjct: 121 AIYYNETKSIKEN-KIYEYGDVKFDMNNYTVT-KGGKELTLTAKEMKIL 167 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 215 bits (548), Expect = 6e-55, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI+EDE LK+ E EGY V+ + DG ++ + + ++V++D+ LP + Sbjct: 6 NCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMS 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G +AR++R++ ++ LT + +E +KI GL IGADDY+ KP +PRE+ R + +L R Sbjct: 66 GEEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRV 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ E +D ++ + G + L ++EF + Sbjct: 126 GKEPGRIQQ----EIITAGEITIDTLAKKIYLR-GTEISLTQTEFDIL 168 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 215 bits (548), Expect = 6e-55, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ILI+ED+ V LK FE EGY V A DG ++ L+++D+ LP N Sbjct: 3 HAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVN 62 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + R LRE+ + ++ LT + E D +LGL++GADDY+TKPF+ +EL R L R Sbjct: 63 GYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +++ Y F D +R+L+ +G+ L EF + Sbjct: 123 --------QRKQTGTVYTFGDCRFDTTARTLV-RNGQDVPLSPKEFDLL 162 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 215 bits (548), Expect = 7e-55, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILI++DE + LK E +G V A +G E + +L+++DI +P +G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDG 59 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+ ++FL+ + +E+D+I G +G DDY+ KPF+ +EL R L R Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++EE + F +D+ SR ++ G L + EF + Sbjct: 120 RAILLNEEGKRA-LLNFKNITIDLKSREVM-VKGNPIGLTKKEFDVL 164 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 10/170 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P IL+VEDE+ ++ + EGY V DG E + +L+++D LPG Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR+ + V ++ LT +D+ D++ GL+ GADDYI KPFN EL R R L Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + +F L+ N+R + +L EF + Sbjct: 121 R--------NHEEDPDLLQFLDLSLNRNTREVF-RGSRLIELTAKEFDLL 161 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIVEDE LK EGY V G E+ + +++++++DI LP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + RE+R+ ++V ++ +T + EVD+I+G E+G DDYI KPF+PRE+ R +L R Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 T ++ S + +L+ SR + +G + L SEF Sbjct: 121 TF-------KKSSDDVLALGPVQLNKTSR-IAEINGNELSLTPSEFDI 160 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 214 bits (547), Expect = 8e-55, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEM-HQILSEYDINLVIMDINLPGK 60 P IL+V+D+ + L +G+DV GAEM + ++ ++L+++DI LPG+ Sbjct: 13 NAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGE 72 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 73 DGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRR 132 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + + +D +R DG L E++ + Sbjct: 133 QRM--EPDARGKQDERIRVGDFAIDPQTRQAFLSDG-ALDLTHGEWQLL 178 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 214 bits (547), Expect = 9e-55, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 4/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 LG+ +++ E Y G L+ +S L+ DG++ L E+ + Sbjct: 121 ELGS---QQKDQEVYMLGGITLN-DSLKLVNVDGKEISLTPVEYGIL 163 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 214 bits (547), Expect = 9e-55, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 25/193 (12%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+D R + + EG++V EA +GA+ ++ + D +L+I+DI +PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R++RE +N ++FL+ R E DK LG G DDY+ KPF+ EL R++ L+ R Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 121 TMNLGTVSEERRSV------------------------ESYKFNGWELDINSRSLIGPDG 156 +E F+ E++ R + +G Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREV-HKNG 179 Query: 157 EQYKLPRSEFRAM 169 + L +E+ + Sbjct: 180 QLLDLTETEYSML 192 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 92/167 (55%), Gaps = 7/167 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E K+ +++ +R ++ +GE +L E+ + Sbjct: 121 K------GRGEEEILKYGKVAVNLKTREVL-KNGEPVELTSKEYALL 160 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 96/167 (57%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+ +D+ + +K F+ EGY+V A +G E ++++ ++VI+D+ +P +G Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +++R +++V ++ LT + +++D+ILGLE+GADDY++KPFNPREL R + +L R Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA- 119 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E +G L R++ +GE +L SE+ + Sbjct: 120 ---SQEREDDPTADIDLSGVLLRRKDRTVYL-EGELVELTTSEYTLL 162 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 6/167 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP +G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ + Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 G + E E+ ++ ++ +GE L R+EFR + Sbjct: 139 AGGPA-----GEVIDIQDLEIRPDA-GVVRRNGEALHLTRTEFRLLC 179 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 5/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +L+V+DE + + EG++V G ++ +L+++D+ L + Sbjct: 77 SRVRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDID 136 Query: 62 GLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + LR V +FLT RD DK+ GL +G DDY+TKPF+ EL R R +L R Sbjct: 137 GFAVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRR 196 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + T +F ELD +R + G +L +E+R + Sbjct: 197 AGSPVTGDGHPAP---LRFADLELDPRTREV-RRAGRLVELTATEYRLL 241 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+VED+ ++ + AE + V A DG + ++ NL+I+D+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR + ++ LT ++ E DK+LGL++GADDY+TKPF PRE R LL RT + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ F + S + L EF +L Sbjct: 129 YNQP------DDTLYFCTLTIYPQSYQAFIEQ-KTVDLTPKEFELLL 168 >UniRef50_C1DA69 DNA-binding response regulator n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DA69_LARHH Length = 233 Score = 213 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 HIL+V+D+ R+ L + + G+ V DG +L+ ++L+++D+N+PG +G Sbjct: 1 MNHILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDG 60 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L + R+LRE+A V ++FL+ E DK+ GL G DDY+ KPF+ EL R L R Sbjct: 61 LEVCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRV 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + + ++D+++ + G+ L EFR + Sbjct: 121 NRFAPAAAVPDNPQCLRAGVLQVDLDTCRV-RVAGQPVTLTEREFRLL 167 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 213 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE + GY V A G++ ++ +L+++D+ LPG +G Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 65 LARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +LR VA++ LT R E D+I GL +GADDY+TKPF+P EL +R +L RT Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S S ++ +D + ++ DG+ +L +EF+ +L Sbjct: 130 G-----SATPVSADTLVIGPLHIDRAAMTV-RVDGQDVELTPTEFKLLL 172 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ++LIVEDE N +K +D G E L E + VI+D++LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R++RE +NVA++ L+ R ++ DK+LGL GADDY+TKPF+ EL R L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + + + ++ L D + L EF + Sbjct: 121 QDRW--LQDHDVQKDVLHIDNIIINKQEY-LFLRDNKPIPLSAKEFELLF 167 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ V TL FE G+ V A+DG ++ +L+I+D+ LPG +G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + ++ V ++ LT +E +I GLE+GA DY+ KPF+ EL R R +L Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR--- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + S +LD NSR + D + +L EF + Sbjct: 118 -WNERQRQTPSSNVLCVGPVQLDRNSRRVWYKD-REIELSHKEFDLL 162 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 91/168 (54%), Gaps = 2/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LI +DE L E +G+ ++ A +G E QI++ ++++ I+DI +P +G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R++RE ++ ++ L+ + DKILGL++GADDYITKPFN E+ R + L R Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E+ + + L+IN+ +L + + L +E++ + Sbjct: 121 KSMSEK-EKCEKQYLECGKLRLNINTCTLY-KENIEVYLTSTEYKILF 166 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 7/175 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+L VED+ V R + E +G+ V DG + ++ ++D+ +PG + Sbjct: 3 EQTHVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ L R +R+++ V ++ L+ R + +D +LGLE GADDY+TKPF+ L R R +L R Sbjct: 63 GVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRF 122 Query: 122 MNLGTVSEERRSVE------SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + F E+D + G+ L +E R +L Sbjct: 123 GHASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEV-RRSGQPVALTPTEMRLLL 176 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 213 bits (544), Expect = 2e-54, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 2/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI+EDE + L EG++ A G++ + L + +L+++D LP + Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++ Q N+ ++ LT R + DKILGLE+GADDYITKPF+ RE+ +R R +L R Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +E F + R L+ GE L EF +L Sbjct: 121 LAQAQAPVKEAAPS-VIGFRDIVVSRAER-LVTKKGEAVDLTPKEFDLLL 168 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 213 bits (543), Expect = 3e-54, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 7/165 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG ++DI LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L RT+ + Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E R LD R++ GE +L +EF + Sbjct: 131 PEGVERVR-----TVGPVTLDPTRRTVT-VSGEPIQLTYTEFDLL 169 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 212 bits (542), Expect = 3e-54, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LI+ED+ N +K G D A DG + + +++I+D+ LP Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR+ V ++ LT R E DK+ L GADDYITKPF+ RELT R + Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R S F+G LD + + ++ ++ EF + Sbjct: 121 RYRPEKEPSFINSKKTFL-FDGLCLDTENHKVTLAS-KEIEITAKEFDLL 168 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 212 bits (542), Expect = 3e-54, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 7/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE L+ E +GY V A G + +I+ +LV++D+ LPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL +AR +R + ++ L+ + E D I GLE+GADDYITKPF+P+ L R R++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R + + +G + ++ +G++ L SEF + Sbjct: 121 LRRQQ---AKAAPPDPGRTIAVSGITIHPRKHTV-EVNGKKIDLTPSEFDIL 168 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 212 bits (542), Expect = 3e-54, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 4/172 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILIVEDE + R L+ FE E Y+V A DG E + +L+++D+ LP K Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +R++ ++ LT + E K+ GL++GADDY+TKPF+ EL R + L Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 120 RT--MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R +++ SV++ F LD G +L EF+ + Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDFKKFIAT-KGGVPLELSTREFQIL 171 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 212 bits (542), Expect = 4e-54, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 90/163 (55%), Gaps = 8/163 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I I++D+ R+ + E EGY+V + ++ + ++ +++I+DI +PG +G L Sbjct: 5 IYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGYEL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ ++V ++ ++ RD ++DKILGLE+G+DDYI KPF+PREL R +++ R Sbjct: 65 CKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKM-- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + + + R ++ +GE+ EF Sbjct: 123 -----PKRSNEIRIKDIVIVPDERKVLY-NGEEMSFTSMEFEL 159 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 8/172 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+ + K E+ G V +G++ + + +LV++D+ LPG++GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R N ++ LT R +++D++LGLE+GADDY+ KP PR L R R LL R Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 125 GTVSEERRSVES-------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E E FN +D + R D + L +EF + Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLED-QSIDLTSAEFDLL 197 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 HIL+VED+ L+ +G+ V DG + +LVI+D+ LPG +G Sbjct: 1 MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR + ++ LT D+E D + GL++GADDY+TKPF P EL R R LL R Sbjct: 61 RDVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRAS 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 V + +D +R++ D E L EF +L Sbjct: 121 G--------PPVRELVYGDIRIDREARTVF-IDDEPVTLRPREFDLLL 159 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 212 bits (541), Expect = 4e-54, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L + EGY+ +A G E L I L+I+DI +P +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +E+R+ + + ++ ++ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T SE + + + +S + G+Q +L EF + Sbjct: 122 EVTNSEP----DVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL 163 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK 60 T +L+V+D+ TRN LK+ E Y+V A DGA + + ++LVI+D+ LP Sbjct: 11 TRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDT 70 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R Sbjct: 71 DGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRR 130 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + V KF G+ +D+ R L P G+ L +F + Sbjct: 131 MQ----LGAPGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLL 175 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 4/170 (2%) Query: 1 MQT-PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + ILI +D T+ + + + A DG E + + +LVI+D+ +P Sbjct: 1 MSSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +E+R+ +NV ++ LT + E+D+I+GLEIGADDYI KPF+PRE+ R + + Sbjct: 61 IFGTEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R N + + + FN + +D++ I + E+ + E + + Sbjct: 121 RVGNANIDTN--LNRKLVTFNNFNIDLDKYE-IRLNKEKIDVTPKECQIL 167 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Query: 1 MQTPH--ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP 58 M IL+VED+L L EGY+V +A DG + +LV++D+ LP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 59 GKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 NG + +ELR++ + ++ L+ + E DKI+GL +GADDY+ KPF +EL R + + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L R F +D+ +R++ +L EF+ + Sbjct: 121 LRRRYPSAGAGSPPP----VTFGDVSVDMAARTV-ARARTPVELTAQEFKLL 167 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 4/167 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 I +V+DE+ +KS E GY V+ A +G + + ++ + +L+I+D+ LP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR+++ V ++ LTG+ +E D + GL+IGADDY+TKPF+PR+L R + LL RT Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE- 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 E+ S+ S N ++ + + G L E+ ++ Sbjct: 129 --DELGEKNSLFSLNDNDLIINDLNYEV-KKAGNIVNLTPIEYNILI 172 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HIL+VED+ + +K + Y V A+DG E ++ +L+++D+ +P Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +++ +R Q+NV ++ LT + E D++ G ++G DDYITKPF+ L R +L R Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ F +D+++ + + + L EF + Sbjct: 121 SY-------DKNVNNHLIFKEVRIDVDAYRVY-VNDVEIILTTKEFEIL 161 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HILI++D+ + + A +G + Q+L + + +L+I+DI LPG + Sbjct: 9 RKNHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGID 68 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 69 GLDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRT 128 Query: 122 MNLGTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ ++ F+ W LD N+ SLI D L + E+ +L Sbjct: 129 QGDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLL 178 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 211 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 2/166 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+ +DE R+ L+ E GY+V EA DG + +L +++ ++DI +P +G Sbjct: 3 YTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGY 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + + LRE ++V ++ ++ + + +KILGL +GADDY+ KPFNP E R + R Sbjct: 63 QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ +R + + ELD + +L +GE +L E+R M Sbjct: 123 MA-AAQPKRPAKVLRCRNLELDQEACALTC-NGEPVELTSVEYRIM 166 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 211 bits (540), Expect = 6e-54, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILIV+DE + +K FE +GY V A++G E + + I+++++DI +P +G Sbjct: 3 EKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++R++ + ++FL+ R +E+DKI GL +G DDYI KPF+ +EL R + L R Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 + + F LDINSR + + E+ EF Sbjct: 122 IPL-----NNRSKISFGKLTLDINSRKV-HYEEEEILFTAKEFDI 160 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 211 bits (540), Expect = 6e-54, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI++D+ L G+ V A + + L +LVI+D+ LP +GL Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R + + ++ LT R + D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R E+ + E++ +RS+ + +L +EF + Sbjct: 133 ----GTRDDAEALRLGALEVNWTTRSVRLAQ-RELELTTAEFELL 172 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 211 bits (540), Expect = 6e-54, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP ILIVED+ + G DV TDG + + +LV++D+ LPG + Sbjct: 8 QTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSD 67 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + ++ LT R ++D++LGLE+GADDY+ KP PR L R R LL R+ Sbjct: 68 GLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS 127 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 N + + +F +D RS+ +GE +E+ + Sbjct: 128 ENAPS----EEIPQRLEFGELVIDNGGRSVTL-NGELVDFTSAEYDLL 170 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 211 bits (539), Expect = 6e-54, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 5/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE + L + EG++ TDG ++V++D+ LPG +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + S + +D+ ++ +G+ LP EF + Sbjct: 119 --GGDDDSEMSDGVLESGPVRMDVERH-VVSVNGDTITLPLKEFDLL 162 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 211 bits (539), Expect = 6e-54, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 89/166 (53%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRAD 147 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +F W L+ R L+ + L +EFR +L Sbjct: 148 VRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLL 193 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 5/166 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L+ EGY+ A +G + L+ I+LVI+D+ +P NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R+ +++ ++ L+ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T + ++ +S + G+ +L EF + Sbjct: 122 QVT----NDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGIL 163 >UniRef50_Q46SD2 Sensor protein n=11 Tax=Bacteria RepID=Q46SD2_RALEJ Length = 396 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ TR L+ + +GY DG + L +L+++D+ L GK+GL Sbjct: 4 HVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKDGLE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R+LR ++N+ ++ LT RD E D+++GLE+GADDY+ KPFNPREL R +++L R +L Sbjct: 64 LCRDLRTRSNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRARSL 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIG 153 E + +KF+GW LD +R+L Sbjct: 124 PDNLEPEAAAW-FKFSGWVLDAATRNLTS 151 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ + + F G+ V A DG E +L+I+D+ LP +G + Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR+++ ++ LT R ++ D++ GL GADDY+ KPF P EL R R +L RT + Sbjct: 87 LRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHTD 146 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + G +D +R++ GE ++ EF + Sbjct: 147 AAPPQ-----IVESAGLRIDPAARAVWDH-GEAIEITSIEFDIL 184 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 9/165 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG + ++DI LPG G + Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L R Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G LD + R++ G+ +L +EF + Sbjct: 131 PPGRPRI-------VGGVTLDPDRRTVTA-AGDPVQLTSTEFDLL 167 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 211 bits (539), Expect = 7e-54, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HILIVEDE L+ E EGY V +G E +E +LV++D+ LPG Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + R LR+ + ++ LT RD+ DK+ GL+IGA+DY+TKPF EL R R L Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++ ++ ++ +R + D ++ +L EF ++ Sbjct: 121 -----QNGTKTEDIGTFLTYDDLRVNEKTREVRRGD-KEVELTPREFDLLV 165 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 211 bits (539), Expect = 8e-54, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+ EDE R+ + + GY+V EA +G E + +++++DI +P +G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + R + V ++ LT R E DK++GL +GADDYI KPF+P EL R ++LL R Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L + R + +D+ ++ + G ++ +E+ + Sbjct: 121 ETLRRRKQPRE----LVSGPFRIDLGAKRV-QKAGVDVEVTPTEYDLLC 164 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 211 bits (539), Expect = 8e-54, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 2/169 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P ILIVEDE + L EG++ A G E +LS + I+L ++D+ +P +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-T 121 ++LRE + + ++FLT R +E D+I GL +G DDY++KPF+ EL R + +L R Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E G +L+ +RS+ D L EF +L Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSV-KVDQIPISLTVKEFDLLL 168 >UniRef50_A4XLT7 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridia RepID=A4XLT7_CALS8 Length = 234 Score = 211 bits (539), Expect = 8e-54, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +V+DE + + + GY+V D + + E + ++VI+DI LP Sbjct: 1 MSRYLVYVVDDEKDILDIIYQYLISRGYEVKTFEDASSFLKEFEENEPDIVILDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +++R+ +NV ++ L+ + E DK+LGLE+G+DDYI+KPF+ EL R + +L R Sbjct: 61 DGYELCKKIRKSSNVPIIMLSAKGEEFDKVLGLELGSDDYISKPFSLLELEARIKKILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFR--AML 170 + + + +F G ++D+N +S+ + + L EF +L Sbjct: 121 VGK-----DTLKVDNALEFFGIKVDLNQKSVFY-NNVKVDLSPKEFETFLLL 166 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 211 bits (538), Expect = 8e-54, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 110/168 (65%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+G Sbjct: 8 MPHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 68 LTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 ++F GW L+ + R L+ PDG +LP+ EF+ ++ Sbjct: 128 QCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLM 175 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 211 bits (538), Expect = 9e-54, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 11/172 (6%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L RT ++G E + G LD S + D ++ +E+R + Sbjct: 121 LRRTDSMGI-------SEPIQVEGLCLDPISHRVTISD-MPVQMGPTEYRLL 164 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 211 bits (538), Expect = 9e-54, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 91/167 (54%), Gaps = 5/167 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED++ N ++S E Y V ++ G E + + +L+I+DI LP +G Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R +NV ++ L+ + EVDK+ GL++GADDYITKPF+ EL R N + R Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 125 GTVSEERRSVESYKF-NGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +++ +++ NG + + ++ D ++ +L EF ++ Sbjct: 124 NKKTDDN---SIWRYKNGLTIIKDEMKVL-IDDKEIELTSKEFSLLV 166 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 4/167 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++D+ L EG+ V DG + ++ + +L+++D+ LP ++G Sbjct: 1 MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + LR+ + ++ LT + + VD+++GLEIGADDY+ KP +PREL R R +L R Sbjct: 61 FDVLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRA- 119 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + +VE L + +R+ D + L +EF + Sbjct: 120 --SIAEANQPNVERLTSGKLSLHLGTRTATW-DNQDVVLTGTEFSVL 163 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 5/171 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+ +D R L+ + EGY+V EA DG E+ Q+ I+L+++DI +P Sbjct: 1 MQT-RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +LRE +NV ++FLT + + DK LG GADDY+ KPF+ ELT R + LL R Sbjct: 59 NGYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 Query: 121 TMNLGTVSEER--RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 EE + + +G L ++ +G++ +L EF + Sbjct: 119 YQVYKGKKEETLLDTEKDLSMDGLTL-RYAQQNAEVNGKEVELTDIEFNIL 168 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 16/175 (9%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE---------YDINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R LL R+ N + + ++ G +L ++ D + L EFR + Sbjct: 145 RALLRRSQN-----QPAETPAVLRYEGLKLFPEECRVLL-DDRELTLSPKEFRLL 193 >UniRef50_D1U362 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U362_9DELT Length = 236 Score = 210 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 4/169 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+++D+ L E EG+ + +G + L+I+D+ LP +G Sbjct: 1 MNKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT- 121 + LR + V ++ LTGR E+D+++GLE+GADDY++KPF REL R R +L R Sbjct: 61 FNVLSRLRGDSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVG 120 Query: 122 --MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 G + R K ++ ++ + D L +EF Sbjct: 121 PERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSD-APVHLTSTEFGL 168 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 210 bits (536), Expect = 1e-53, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ R + +E Y V A DG +I Y +++++D+ LP +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R + V ++ T +D++ DK+LGL +GADDYITKPF+ EL R + + R Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 S ++ ++I+ ++ G L +EF Sbjct: 123 --SSRNSQDMVIQYKDLIINISKY-VVSKSGIALNLTHTEFEI 162 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 210 bits (536), Expect = 1e-53, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 90/167 (53%), Gaps = 2/167 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L + F W LD +R L+ D L +E+R + Sbjct: 126 MLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLL 172 >UniRef50_C1SI97 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SI97_9BACT Length = 236 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ L+ + + EGY+V A++G + E +++++D+NLP NG Sbjct: 8 KILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQQ 67 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R + ++ +M L+ RDN DK++ LE GADDY+TKPF EL R + +L R+ Sbjct: 68 ICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEKN 127 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 T S+E + + F+ +D SR + D E+ L E+ +L Sbjct: 128 NT-SQEAGTGDVLIFHHMTIDKASRQVFIKD-EKVALTPKEYEILL 171 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE ++ E GY V +G E+ L + +LVI+D+ LPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L ++++E+ ++ ++ +T + E + +LGLE+GADDY+ KPF+ REL R R++L RT Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + L++ + + + L E++ + Sbjct: 131 EEEEQFEGN---ITIGNIFLNLKAHKAF-INNFEVDLTLIEYKIL 171 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 11/171 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKN 61 IL+VEDE ++ + EGY A DG + L+ + +++D+ LP + Sbjct: 10 QKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDIS 69 Query: 62 GLLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G + + LREQ +V ++ +T + E+D+++G E+GADDY+ KPF+ REL +R R LL Sbjct: 70 GTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALL 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT + + F+ +D + D ++ L EFR + Sbjct: 130 RRTER------PADNPDMITFDRLRVDREGHRVW-VDEQEISLTALEFRLL 173 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 89/173 (51%), Gaps = 14/173 (8%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEG-YDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ I+I+ED+ +++ E EG + V T G + + E+ NL+++DINLP Sbjct: 1 MKR-SIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPL 59 Query: 60 KNGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 NG + R LR A+V ++ LT R +E DKI GL +GADDYITKPF+ REL R Sbjct: 60 MNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINA 119 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +L RT + Y +D N ++ G++ L R EF + Sbjct: 120 VLRRTEGTPS--------SVYDDGTLFIDYN-HFVVRCQGQEINLTRKEFALL 163 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 12/174 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGK 60 T +L++ED+ + Y+V A E + L I+LVI+D+ LP Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 61 NGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + + +R+ + A++ LT + + D++LGLE+GADDY++KPF PREL R R Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ R + ++ ++ F ++ +S + D E +L +F+ + Sbjct: 128 AVMRRHD----LPLHQQKEDNLVFGRLKVYPDSHEVT-IDDEPVRLTTHQFQLL 176 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 7/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+++DE R L+S + EG++VFEA +G E + + +L+++DI +P GL Sbjct: 4 TILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLD 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R ++A ++ LT + + DKI+GLE+GADDYITKPFN RE+ R R +L R+ Sbjct: 64 FMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + L+ ++ +L+ + L SEF + Sbjct: 124 QPQA------DVLRIGEIVLERSACTLM-VGEQTVDLTPSEFEIL 161 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 94/169 (55%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + E EGY V A DG + Q+ + ++VIMDI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +++++ + +V ++ L+ +D+ VDKI+G ++G DDY TKPF+P EL +R + +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E++ + + + ++ ++R L+ G++ L EF + Sbjct: 121 SK----AVPEKKGKDVLDYQNFYIEYSTR-LVRIWGKEVTLTAKEFDML 164 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 9/165 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+VEDE L + G+ G + + + +L+++DI LPGKNGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R + V + +T E+D++LGLE+GADDYI KPF+PRE+ R + L R + Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G R G+++D + + + ++ L +E+R + Sbjct: 127 GVPEPTRT--------GFQIDEAQQRISFKN-QRLDLTPTEYRLL 162 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 96/169 (56%), Gaps = 2/169 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQ-ILSEYDINLVIMDINLPGK 60 + IL+V+D+ + L + EG++V G + +L + + V++DI +PG Sbjct: 4 EKYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGM 63 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + R +R + V ++ LTGR +++D+I+GLE+GADDY+ KP NPREL+ R + ++ R Sbjct: 64 SGLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 T N +++ +G ELD +R+ + + L +EF A+ Sbjct: 124 TENSLGNGAAGKTIVHALLHGIELDTGTRTAV-VNNTTLPLTSAEFNAL 171 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 5/170 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+V+DE ++ E GY V A DG ++ + +L+++D+ +PG +G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + R L+ + ++ L+ R +E+DK+LGLE+GADDYITKPF+PREL R L Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + + +D S I G++ L EF + Sbjct: 121 RDKKEEFIIPRDSKNIIMR-GKLIIDKECMS-IELGGKKQYLKAKEFELL 168 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 210 bits (535), Expect = 2e-53, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 3/168 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG +G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 63 LLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL RT Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ +G +LD R D Q L EF + Sbjct: 121 AEASRLRQQIGDAAP-TSSGLQLDNARRRATFRD-VQLTLRPKEFDLL 166 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 5/168 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IL+V+DE + E Y V +G + +I+ + ++ VIMD+ LP +G Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R+ + ++ LT + ++VDKILGLE+GADDYITKPF+P+EL R + +L RT Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++E + + +D R ++ + E+ +L +EF+ + Sbjct: 122 DRAINLAEIDP---TLQAENIAIDF-KRMVVKKNNEKIQLTPNEFKLL 165 >UniRef50_Q0TKP2 Phosphate regulon transcriptional regulatory protein PhoB n=25 Tax=Proteobacteria RepID=Q0TKP2_ECOL5 Length = 243 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 11/168 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE R + + E G+ EA D L+E +L+++D LPG +G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 65 LARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L+ ++ ++ ++ LT R E D++ GLE GADDYITKPF+P+EL R + ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + E + G LD S ++ E ++ +EF+ + Sbjct: 124 SPMAV-------EEVIEMQGLSLDPTSHRVMA-GEEPLEMGPTEFKLL 163 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 8/167 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+DE L++ A+GY++ A DG +I+ ++ +LVI DI++P +GL Sbjct: 3 ARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDGL 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +ELR ++ V ++ L+ +++E K+ L++GADDYITKPFN EL R R L R Sbjct: 63 ALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRR--- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + + + +D + L+ G + +L EF +L Sbjct: 120 ----APVAEIATILELGDFVIDTAAH-LVKVRGTEVRLTPKEFDLLL 161 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML Sbjct: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +I IVED LK E + V + G E+ + +L+++D+ LPG Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L RE+R + V ++ +T + E+D++LGLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 68 DGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E + L + S+ G+ K+ +SEF + Sbjct: 128 -------GGEEPHEAAIHIGPLLLKPETHSIT-VAGKDLKVTQSEFSLL 168 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TP +L+VEDE L + E +G + A DG E Q + +LV++DI+LP + Sbjct: 18 STPMVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVD 77 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R +R ++V ++ +T ++VDK+L L +GADDY+ KPFNP E+ R R +L RT Sbjct: 78 GVDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRT 137 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG----EQYKLPRSEFRAM 169 + E+D+ + S D L +EFR + Sbjct: 138 QAKPAPVAAP-----IRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLL 184 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 7/169 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+ EDE R+ + + G+DVFEAT+G E ++V++D+ +P +G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +R+ NV ++ LT R E DKI GL GADDYI KPF+P EL R + LL R Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + +R+ + K + +D+ ++ + G+ L +E+ + Sbjct: 121 EKV-----KRKDSKRLKSGPFAIDLAAKQVTKY-GQSIDLTPTEYDLIC 163 >UniRef50_Q1IY67 Two component transcriptional regulator, winged helix family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IY67_DEIGD Length = 227 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L++ EGY A DG +L+++D+ LPG++GL + Sbjct: 5 ILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRSGLDV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R ++ +T R E D+I+GLE+GADDY+ KPF PRE+ R + +L R Sbjct: 65 LKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAHAAL 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 +E + E+D + +G+ L +EFR + Sbjct: 125 EGTERP-----LRVGPLEVDRRAARA-RVNGQPLGLTPAEFRLL 162 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 10/169 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRA 168 R +N+ + +G D + +L+ DG L +EF Sbjct: 122 RNVNILPKVAHWQR------DGLAADFEAYTLL-VDGVDAHLTPTEFNL 163 >UniRef50_A9AXT6 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXT6_HERA2 Length = 231 Score = 209 bits (534), Expect = 3e-53, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q +L+ EDE V R+ ++ + G++V EAT+G E + L+I+D+ +P Sbjct: 4 QPVRVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLT 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + + +REQ+ V ++ LT D E DK++ ++GADDY+ KPF EL R R +L R+ Sbjct: 64 GFEVCQRIREQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 ++ E+D+ + S+ G +L +EF + Sbjct: 124 QWSVQPQASGTK----RYGELEIDLEAHSV-RRAGLDVRLTPTEFALL 166 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 6/169 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+I +VED+ + S + + V G + +LVI+D+ LPG +G Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L L R LR+++ ++ LT RD+ D++LGLE+GADDY+TKP PR L R R LL R+ Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 +V+E R + G +D+ R++ GE+ +L E+ ++ Sbjct: 167 ----SVNEPRLDNDLILIGGLRIDLAERTVSWR-GEEVELSSGEYNLLV 210 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 3/166 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E+++ E + LD+ S L +G+Q ++ EF+ + Sbjct: 132 FS--KGEKQNHEIIQIGDVMLDLVSCKLY-KNGQQKEVTSYEFKIL 174 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 209 bits (533), Expect = 3e-53, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 98/170 (57%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L + I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 TMNL-GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 G + E + + + +L+ ++ DG + ++ E++ + Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVA-DGNKVEVSDLEYKIL 173 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 209 bits (533), Expect = 4e-53, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ L EG+ G E + +++D+ LPG NG Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGING 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R+LR+Q V ++ LT R E D I+GLEIGADDY++KP NPR L R R +L RT Sbjct: 61 FDLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRRTG 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E S E L +R ++ + +L +EF + Sbjct: 121 G-----ERATSSEQLNQGALTLYPMARKVMLGA-VEIELTSAEFNIL 161 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 209 bits (533), Expect = 4e-53, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 4/169 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + L E Y+V + DGAE ++L + + + +I+D+ LPG + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R R ++ + R +EV +ILGLE+GADDY+ KPF+ EL R + LL R Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 L S R + G +D +R DG + L EF + Sbjct: 123 VDALARDS--RIDAGTLDVAGLAIDPIAREA-SVDGARLDLTPREFDLL 168 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+VED+ + + E EGY V A DG + + + +++I+DI +P NG Sbjct: 2 KVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R+L ++ ++ LT +++ VDK+LGLE+GADDY+TKPF+ RE+ R + L R+ Sbjct: 62 VFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFT 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + E V + + G ++ SR++ DG++ L EF ++ Sbjct: 122 TFKNSEIEKVTT-EMGGLSIEPYSRTV-RMDGQELDLTLKEFDLLV 165 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + L S F+ E + V+ A DG E + L E +++++DI +PG Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R R+ ++ ++FL+ +D+E D+++GL +GADDY+ KPF+ REL R ++ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 E V SY+ +D + L +EF + Sbjct: 121 RRG-----EVLSQVASYEIRDLFIDKERFEVRRKK-AWISLTPTEFSLL 163 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T ILIV+DE N L+++ + EG+ ++ T G + + +L+++DI LP + Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + ++R+ V + FL+ ++ ++DKILGL IG DDYITKPF+P+E+ + + R Sbjct: 70 GYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ Y+F +D ++ + G L EF +L Sbjct: 130 QY------KEKNPNMYQFGDITID-EAQGTVLRAGTLLTLTAKEFNILL 171 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 7/168 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TP ILIVEDE L A Y + G ++ + + +L+++D+ LPG + Sbjct: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L RE+R +++ ++ +T + E+D++LGLEIGADDYI KP++PRE+ R + +L R Sbjct: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ +D G+ L +EFR + Sbjct: 129 KPQRELQQQDAES------PLIIDEGRFQASWR-GKMLDLTPAEFRLL 169 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 208 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 9/173 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P +L+VED+ ++ GY L LV++D+ LPG Sbjct: 18 MSEPLLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGM 77 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G L R +R ++ ++ +T + E+D+ILG E+G DDY+ KPF+ REL +R R + Sbjct: 78 DGFELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAI 137 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 L R ++ E G E+D+ + DG++ L EF+ ++ Sbjct: 138 LKRERRQSGKAQ-----EVLGTGGLEVDLVRHCVTL-DGQELVLTLMEFKLLV 184 >UniRef50_A9B2W4 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B2W4_HERA2 Length = 227 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ R + GY V +A DG + + LVI+D+N+PG +G Sbjct: 2 KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R Q+ V +M LT R++E D I GL+ GADDY+ KPF+PR LT R R LL R Sbjct: 62 VCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVGGE 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + LD + +S+ L EFR + Sbjct: 122 RPTP--------LQQGDLVLDTDRQSVSREGLGFVALTNREFRLL 158 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 9/169 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + IL++ED+ + + AEGY V A DG E Q + +LVI+DI +P Sbjct: 1 MNS-SILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNL 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + + +R+ ++V ++FLT ++E D++ G ++ DDYITKPF+ L R +L R Sbjct: 60 DGYGVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + + + + F +LD+N+ + DGE +L EF + Sbjct: 120 S-------NKTINDKFIVFEKLKLDLNTY-IAEIDGEPIELTLKEFNIL 160 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 3/168 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+VED+ + L+ G+ V DG + +L+++DI LPG +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 64 LLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR++ ++ +T + EVDK+LGLE+GADDYITKPF+ RE+ R + L R Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + ++ + + ++ R + +GE L EF +L Sbjct: 127 -VDQETQGQADDTPIELGKVVVEPEKRKVT-VEGEAVDLTSKEFELLL 172 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P+ILIV+D+ R + E EG+ +EA DG + Q ++E +++VI+DI +P +G Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ELR+ ++ ++ LT + K+ G +G DDY+ KPF+P EL +R + LL R Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 + S + L+ + + + LP EF + Sbjct: 152 TVSQS--------IQVGTVLLNRKTFEVT-IGEQTVTLPLKEFELLF 189 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 208 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 HILI +D + L + + E A DG E ++ +Y+ +V++D+ +P ++G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R +++V ++ +T R + +KI+GL+IGADDYI KPF+P E+ R R +L R Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSE 165 + E+ S E+++ +L G + L + E Sbjct: 119 -MTKKENEQTSENVLSIANLEINLEEYTL-HIGGTKISLTKKE 159 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 3/170 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+TP IL+++DE + ++ EGY V + + + + L ++ I+LVI+D+ +PG Sbjct: 8 METPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGV 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +RE+ N+ ++F++ + + DKI GL GADDYI KPFN EL R ++ L R Sbjct: 68 DGIQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAML 170 S + N +D N ++ D + + E+ ++ Sbjct: 128 YQVYSKPIGVDNS--IIQANDLLIDTNK-KMVSVDNRPVAVTKIEYEILV 174 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 5/169 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+ ED+ N++ E EG+ V A DG E ++ +L+IMD+ +P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G ++LR+ + V ++ L+ + + DK++GL IGADDYITKPFNP EL R + L R Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 + ++ S E + +L+ ++ D + L E++ + Sbjct: 121 YHSYDNLA----SSEIIQIGNIKLNTFEKTC-SVDDKIINLTSLEYKIL 164 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.210 0.811 Lambda K H 0.267 0.0639 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,667,909,174 Number of Sequences: 3077464 Number of extensions: 108799986 Number of successful extensions: 373610 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34508 Number of HSP's successfully gapped in prelim test: 14670 Number of HSP's that attempted gapping in prelim test: 274131 Number of HSP's gapped (non-prelim): 56019 length of query: 170 length of database: 1,040,396,356 effective HSP length: 119 effective length of query: 51 effective length of database: 674,178,140 effective search space: 34383085140 effective search space used: 34383085140 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 90 (38.6 bits)