BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (66 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7ZRT0 Glycogen synthesis protein glgS n=62 Tax=Enterob... 141 6e-33 UniRef50_D2TRP2 Glycogen synthesis protein GlgS n=2 Tax=Enteroba... 114 1e-24 UniRef50_B5QZ33 Glycogen synthesis protein glgS n=33 Tax=Enterob... 102 5e-21 UniRef50_C9Y2V2 Glycogen synthesis protein glgS n=1 Tax=Cronobac... 60 2e-08 UniRef50_D0Z840 Glycogen synthesis protein n=2 Tax=Edwardsiella ... 42 0.004 UniRef50_D1RSX2 Glycogen synthesis protein n=1 Tax=Serratia odor... 40 0.023 UniRef50_A8GGF4 Glycogen synthesis protein n=1 Tax=Serratia prot... 40 0.032 >UniRef50_A7ZRT0 Glycogen synthesis protein glgS n=62 Tax=Enterobacteriaceae RepID=GLGS_ECO24 Length = 66 Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR Sbjct: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 Query: 61 ELELEH 66 ELELEH Sbjct: 61 ELELEH 66 >UniRef50_D2TRP2 Glycogen synthesis protein GlgS n=2 Tax=Enterobacteriaceae RepID=D2TRP2_CITRO Length = 68 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 51/66 (77%), Positives = 60/66 (90%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 M++++ SLNNFDFLARSFARM AEGRPVDI AVTGNMDEEHR+WFC RYA YCQQ ++AR Sbjct: 3 MNNTVYSLNNFDFLARSFARMQAEGRPVDIQAVTGNMDEEHRSWFCKRYAHYCQQALRAR 62 Query: 61 ELELEH 66 +LE+EH Sbjct: 63 KLEVEH 68 >UniRef50_B5QZ33 Glycogen synthesis protein glgS n=33 Tax=Enterobacteriaceae RepID=GLGS_SALEP Length = 67 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 47/56 (83%), Positives = 48/56 (85%) Query: 11 FDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66 FDFLARSFARM AEGRPVDI AVTGNMDEEHR WFC RYA YCQQ QA+ LELEH Sbjct: 12 FDFLARSFARMQAEGRPVDIQAVTGNMDEEHRDWFCKRYALYCQQATQAKRLELEH 67 >UniRef50_C9Y2V2 Glycogen synthesis protein glgS n=1 Tax=Cronobacter turicensis RepID=C9Y2V2_CROTZ Length = 73 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/52 (55%), Positives = 33/52 (63%) Query: 7 SLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQ 58 S NFDFLA SFARM+ GR +DI AVTGNM E WF RY Y + +Q Sbjct: 8 SFKNFDFLASSFARMNVAGRRIDIDAVTGNMSEAQSAWFRERYNHYRKHGLQ 59 >UniRef50_D0Z840 Glycogen synthesis protein n=2 Tax=Edwardsiella RepID=D0Z840_EDWTE Length = 52 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 12 DFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQ 58 DFLA S A M ++GR + V GNM + R F R A+Y Q+ Q Sbjct: 2 DFLASSIAMMESQGRNISATEVQGNMTAKQRALFNERLAYYRQRYTQ 48 >UniRef50_D1RSX2 Glycogen synthesis protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RSX2_SEROD Length = 71 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 9 NNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAREL 62 +N DFLA S A M +GR +D V GNM E F R +++ +Q+ QA + Sbjct: 14 SNMDFLASSIALMEWQGREIDAGKVAGNMSESQSRLFFERLSYF-RQLYQATSM 66 >UniRef50_A8GGF4 Glycogen synthesis protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GGF4_SERP5 Length = 70 Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 29/63 (46%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 +D L DFLA S A M +GR VD V GNM E F R +++ Q A Sbjct: 5 VDRHLYGGGEMDFLASSIALMEWQGREVDAGKVAGNMSESQSRLFFERLSYFRQLYQAAT 64 Query: 61 ELE 63 +E Sbjct: 65 TVE 67 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TRP2 Glycogen synthesis protein GlgS n=2 Tax=Enteroba... 109 3e-23 UniRef50_A7ZRT0 Glycogen synthesis protein glgS n=62 Tax=Enterob... 108 6e-23 UniRef50_B5QZ33 Glycogen synthesis protein glgS n=33 Tax=Enterob... 95 7e-19 UniRef50_C9Y2V2 Glycogen synthesis protein glgS n=1 Tax=Cronobac... 83 3e-15 Sequences not found previously or not previously below threshold: UniRef50_A8GGF4 Glycogen synthesis protein n=1 Tax=Serratia prot... 43 0.002 UniRef50_D1RSX2 Glycogen synthesis protein n=1 Tax=Serratia odor... 41 0.015 UniRef50_D0Z840 Glycogen synthesis protein n=2 Tax=Edwardsiella ... 40 0.016 UniRef50_C8Q614 Glycogen synthesis protein GlgS n=1 Tax=Pantoea ... 39 0.036 CONVERGED! >UniRef50_D2TRP2 Glycogen synthesis protein GlgS n=2 Tax=Enterobacteriaceae RepID=D2TRP2_CITRO Length = 68 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 51/66 (77%), Positives = 60/66 (90%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 M++++ SLNNFDFLARSFARM AEGRPVDI AVTGNMDEEHR+WFC RYA YCQQ ++AR Sbjct: 3 MNNTVYSLNNFDFLARSFARMQAEGRPVDIQAVTGNMDEEHRSWFCKRYAHYCQQALRAR 62 Query: 61 ELELEH 66 +LE+EH Sbjct: 63 KLEVEH 68 >UniRef50_A7ZRT0 Glycogen synthesis protein glgS n=62 Tax=Enterobacteriaceae RepID=GLGS_ECO24 Length = 66 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR Sbjct: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 Query: 61 ELELEH 66 ELELEH Sbjct: 61 ELELEH 66 >UniRef50_B5QZ33 Glycogen synthesis protein glgS n=33 Tax=Enterobacteriaceae RepID=GLGS_SALEP Length = 67 Score = 94.7 bits (234), Expect = 7e-19, Method: Composition-based stats. Identities = 47/56 (83%), Positives = 48/56 (85%) Query: 11 FDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQARELELEH 66 FDFLARSFARM AEGRPVDI AVTGNMDEEHR WFC RYA YCQQ QA+ LELEH Sbjct: 12 FDFLARSFARMQAEGRPVDIQAVTGNMDEEHRDWFCKRYALYCQQATQAKRLELEH 67 >UniRef50_C9Y2V2 Glycogen synthesis protein glgS n=1 Tax=Cronobacter turicensis RepID=C9Y2V2_CROTZ Length = 73 Score = 82.8 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 34/54 (62%) Query: 5 LNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQ 58 + S NFDFLA SFARM+ GR +DI AVTGNM E WF RY Y + +Q Sbjct: 6 IYSFKNFDFLASSFARMNVAGRRIDIDAVTGNMSEAQSAWFRERYNHYRKHGLQ 59 >UniRef50_A8GGF4 Glycogen synthesis protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GGF4_SERP5 Length = 70 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%) Query: 1 MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQAR 60 +D L DFLA S A M +GR VD V GNM E F R +++ Q A Sbjct: 5 VDRHLYGGGEMDFLASSIALMEWQGREVDAGKVAGNMSESQSRLFFERLSYFRQLYQAAT 64 Query: 61 ELE 63 +E Sbjct: 65 TVE 67 >UniRef50_D1RSX2 Glycogen synthesis protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RSX2_SEROD Length = 71 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 25/46 (54%) Query: 9 NNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQ 54 +N DFLA S A M +GR +D V GNM E F R +++ Q Sbjct: 14 SNMDFLASSIALMEWQGREIDAGKVAGNMSESQSRLFFERLSYFRQ 59 >UniRef50_D0Z840 Glycogen synthesis protein n=2 Tax=Edwardsiella RepID=D0Z840_EDWTE Length = 52 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 12 DFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQMMQ 58 DFLA S A M ++GR + V GNM + R F R A+Y Q+ Q Sbjct: 2 DFLASSIAMMESQGRNISATEVQGNMTAKQRALFNERLAYYRQRYTQ 48 >UniRef50_C8Q614 Glycogen synthesis protein GlgS n=1 Tax=Pantoea sp. At-9b RepID=C8Q614_9ENTR Length = 66 Score = 39.2 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 9 NNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTWFCARYAWYCQQ 55 +FDF+A S ARM+ +GR V++ V +M+E R F Y Y Sbjct: 13 EDFDFIAVSLARMNYQGRKVNVDQVAASMNEACRVRFLDNYRNYLSH 59 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.137 0.418 Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,444,472 Number of Sequences: 3077464 Number of extensions: 9111721 Number of successful extensions: 28785 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28770 Number of HSP's gapped (non-prelim): 16 length of query: 66 length of database: 1,040,396,356 effective HSP length: 38 effective length of query: 28 effective length of database: 923,452,724 effective search space: 25856676272 effective search space used: 25856676272 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits)