Phyre 2 alignment of P0AA93 with c3fmsA_

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Job Description | P0AA93
Confidence | 20.78% | Date | Thu Jan 5 11:12:15 GMT 2012
Rank | 136 | Aligned Residues | 43
% Identity | 19% | Template | c3fmsA_
PDB info | PDB header:transcription regulator | Chain: A: PDB Molecule:transcriptional regulator, gntr family; | PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 497 | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | H | G | I | D | P | K | V | I | E | R | V | E | A | N | E | M | P | G | N | K | I | G | L | L | N | V | H | H | R | V | K | L | L | Y | G | E | G | L | H | I | R | R | L | E | P | G | T | E | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | E | K | L | N | V | R | E | L | S | E | K | L | . | . | . | . | . | . | . | G | I | S | F | T | P | V | R | D | A | L | L | Q | L | A | T | E | G | L | V | K | V | V | P | R | V | G | F | F | V
Template Known Secondary structure |  | T |  | B |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  | T | T | T |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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